BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047120
         (634 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Vitis vinifera]
          Length = 635

 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/635 (68%), Positives = 532/635 (83%), Gaps = 3/635 (0%)

Query: 1   MFVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP 60
           M +SA  NQP NST  TL+LL K KTL+DVNQIH+R+ITTGFI N  LTT+++ +FSSS 
Sbjct: 1   MLISATSNQPWNSTHPTLILLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSS 60

Query: 61  CTPLTEFARYIFFKYH---AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV 117
             PL EFARY+F   H     R++ +PFLWNAIIK++SHG DP+EA V+F LML+NGV V
Sbjct: 61  HKPLVEFARYLFMSRHFGRKHRKQDNPFLWNAIIKSFSHGEDPREAFVIFNLMLENGVCV 120

Query: 118 DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLF 177
           DKFS SLVLKACSRLGLI+EG+QIHGLL ++  GSD+FLQNCL+ LY+RCG L  ARQLF
Sbjct: 121 DKFSFSLVLKACSRLGLIKEGMQIHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLF 180

Query: 178 DKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF 237
           D+M  RDSVS+NSMIDGYVK G ++SARELFD MP+ ++NLISWNS+++GYA+ + GL+ 
Sbjct: 181 DRMMKRDSVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRV 240

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
           AW++FE+MP+RDLISWNSM+ GCVKCGKM++A  LF++MPKRDVVSWANM+DGYAKLG +
Sbjct: 241 AWELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNQMPKRDVVSWANMVDGYAKLGEI 300

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
           DIAR LFDEMP+RDV++CNAMM GYV+NG+ M+AL  F +M     L PD+A+L+I LSA
Sbjct: 301 DIARGLFDEMPERDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSA 360

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
           IAQLGH D+GVA+H Y+E + FSL+ K GVALIDMY+KCGSI+NA+ VFE I+D S+DHW
Sbjct: 361 IAQLGHFDEGVALHCYIEDNGFSLSEKLGVALIDMYAKCGSIDNALSVFEDIDDKSIDHW 420

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
           NA+I GLAIHGLGE+AF+L MEME+L ++PDDITF G+LNAC HAGLVKEGL+CFELMRR
Sbjct: 421 NAIIGGLAIHGLGEVAFELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEGLMCFELMRR 480

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
           +HK+EP+LQHYGCMVDILGRAGH+E A+  +E MP+EPNDV+WRTLLSACRN+EN  +GE
Sbjct: 481 VHKVEPKLQHYGCMVDILGRAGHVEEAKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGE 540

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVV 597
           PVAKHLI +DS N SSYVLLSN++AG GMWND  R+R MMK+R+LKK+PGCS IELEG V
Sbjct: 541 PVAKHLISVDSYNPSSYVLLSNIYAGFGMWNDVYRIRMMMKQRDLKKIPGCSQIELEGNV 600

Query: 598 HEFFVRDKSRLQVRDIYYMLDNMWTPDSVATSCTH 632
           HEFFVRDKS  QVR+IY MLD++   +S    C H
Sbjct: 601 HEFFVRDKSHPQVREIYSMLDSLSALNSEVAYCKH 635


>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
 gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  925 bits (2391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/640 (69%), Positives = 532/640 (83%), Gaps = 8/640 (1%)

Query: 1   MFVSANYNQ-PCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSS 59
           M +S N NQ P NS   TL+LL+KCK L+D+NQIHAR++TTGFIKNT LTTK++ SFS+S
Sbjct: 1   MLLSGNLNQQPWNSAIPTLVLLKKCKRLSDINQIHARLLTTGFIKNTFLTTKIILSFSTS 60

Query: 60  PCTPLTEFARYIFFKYHAFREKKD-------PFLWNAIIKTYSHGLDPKEALVMFCLMLD 112
              PL EFAR+IFF++HAF   +        PFLWNAIIKTYSHG DPKEA+ +  LML+
Sbjct: 61  LHAPLIEFARFIFFRHHAFEFDEKEEEEEKDPFLWNAIIKTYSHGHDPKEAMWLVSLMLE 120

Query: 113 NGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF 172
           NG   DKF+ SLVLKACSR+GL++EG+QIHGLL+K+ FGSDLFLQNCLIS YV+CG L  
Sbjct: 121 NGAFADKFTLSLVLKACSRVGLVKEGMQIHGLLKKLEFGSDLFLQNCLISFYVKCGCLVR 180

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK 232
           A Q+FD+M  RDSVSYNSMIDGYVK G I+ AR +FD +P+ ERNLISWNS++ GYAQ +
Sbjct: 181 ASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARVVFDCIPLEERNLISWNSLIRGYAQSE 240

Query: 233 SGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYA 292
            G+  AWQ+F KMPERDLISWNSM+ GCVKCG+M+DAQ LFD+MP RD+VSWANMIDGYA
Sbjct: 241 DGILVAWQLFAKMPERDLISWNSMIDGCVKCGRMEDAQGLFDRMPNRDIVSWANMIDGYA 300

Query: 293 KLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLV 352
           K GRVDIAR LFDEMP+RDVVA NAMMGGYV+NGY M+AL IF  MQ +     D+A+L+
Sbjct: 301 KNGRVDIARSLFDEMPERDVVAYNAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLL 360

Query: 353 IVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG 412
           I LSAIAQLGHIDKGVAIHR++E+  FSL+G+ GVALIDMYSKCGSIENA+ VFE I++ 
Sbjct: 361 IALSAIAQLGHIDKGVAIHRFIEEIGFSLDGRLGVALIDMYSKCGSIENAMMVFENIKEK 420

Query: 413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCF 472
           SVDHWNA+I GLAIHGLGELAFD LMEMER+ +EPDDITF GLLNAC HAGLVKEG++CF
Sbjct: 421 SVDHWNAIIGGLAIHGLGELAFDFLMEMERMRVEPDDITFIGLLNACGHAGLVKEGMMCF 480

Query: 473 ELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYEN 532
           ELMRR+HK+EP+LQHYGCMVDILGRAGHIE A+N +E+MP EPNDVIWR+LLSAC+ +E+
Sbjct: 481 ELMRRVHKVEPKLQHYGCMVDILGRAGHIEEAKNFVEEMPFEPNDVIWRSLLSACKTHES 540

Query: 533 LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
            NVG+PVA++L+ +DS + SSYVL SNM+AGLG WND R+VR+MMK++NLKK+PGCSWIE
Sbjct: 541 FNVGQPVAENLMRLDSPSPSSYVLASNMYAGLGKWNDVRKVRAMMKQKNLKKIPGCSWIE 600

Query: 593 LEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVATSCTH 632
           LEG V+ FFV+DKS  Q   IY +LD++   DS  + C +
Sbjct: 601 LEGHVYAFFVQDKSHPQFSGIYSILDSLSMTDSEHSYCKN 640


>gi|147798551|emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]
          Length = 690

 Score =  857 bits (2214), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/625 (65%), Positives = 502/625 (80%), Gaps = 13/625 (2%)

Query: 8   NQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF 67
           ++P NST  TL+LL K KTL+DVNQIH+R+ITTGFI N  LTT+++ +FSSS   PL EF
Sbjct: 64  HKPWNSTHPTLILLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEF 123

Query: 68  ARYIFFKYH---AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL 124
           ARY+F   H     R++ +PFLWNAIIK++SHG DP EA  +F LML+NGV VDKFS SL
Sbjct: 124 ARYLFMSRHFGRKHRKQDNPFLWNAIIKSFSHGEDPXEAFXIFNLMLENGVCVDKFSFSL 183

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           VLKACSRLGLI+EG+QIHGLL  +  GSD+FLQNCL+ LY+RCG L  ARQLFD+M  RD
Sbjct: 184 VLKACSRLGLIKEGMQIHGLLGXMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMXRD 243

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244
           SVS+NSMIDGYVK G ++SARELFD MP+ ++NLISWNS+++GYA+ + GL+ AW++FE+
Sbjct: 244 SVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEE 303

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
           MP+RDLISWNSM+ GCVKCGKM++A  LF+ MPKRDVVSWANM+DGYAKLG +DIAR LF
Sbjct: 304 MPKRDLISWNSMIDGCVKCGKMENAHHLFNXMPKRDVVSWANMVDGYAKLGEIDIARGLF 363

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
           DEMP+RDV++CNAMM GYV+NG  M+AL  F +M     L P +A+L+I LSAIAQLGH 
Sbjct: 364 DEMPERDVISCNAMMAGYVQNGXLMEALXFFHDMLSXKELFPXNATLLITLSAIAQLGHF 423

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
           D+GVA+H Y+E + FSL+ K G ALIDMY+KCGSI+NA+          +DHWNA+J GL
Sbjct: 424 DEGVALHCYIEDNGFSLSEKLGXALIDMYAKCGSIDNAL----------IDHWNAIJXGL 473

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
           AIHGLGE+AF+L MEME+L ++PBDITF G+LNAC HAGLVKEGL+ F LMR +HK+EP+
Sbjct: 474 AIHGLGEVAFELFMEMEKLFVKPBDITFIGVLNACNHAGLVKEGLMXFXLMRXVHKVEPK 533

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
           LQHYGCMVDILGRAGH+E  +  +E MP+EPNDV+WRTLLSACRN+EN  +GEPVAKHLI
Sbjct: 534 LQHYGCMVDILGRAGHVEEXKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLI 593

Query: 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
            +DS N SSYVLLSN++A  GMWND  R+R MMK+R+LKK+PGCS IELEG VHEFFVRD
Sbjct: 594 SVDSYNPSSYVLLSNIYAXFGMWNDVYRIRMMMKQRDLKKIPGCSQIELEGNVHEFFVRD 653

Query: 605 KSRLQVRDIYYMLDNMWTPDSVATS 629
           KS  Q   I  +   + T D   TS
Sbjct: 654 KSHPQRLPIVNISAELGTDDQKLTS 678


>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
 gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
          Length = 638

 Score =  853 bits (2205), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/636 (62%), Positives = 508/636 (79%), Gaps = 6/636 (0%)

Query: 1   MFVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP 60
           M V AN      ST  TLLLLR C+T NDVNQ+HAR+I TG++KN+ LTTK++ +  SSP
Sbjct: 1   MLVPANSCHLWPSTPPTLLLLRHCETQNDVNQVHARIIKTGYLKNSSLTTKIILNSISSP 60

Query: 61  CTPLTEFARYIFFKYHAFREKK------DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG 114
             PL EFARY+FF  +A +  +      DPFLWNA+IK+YSHG +P  ALV+FC+ML+NG
Sbjct: 61  HKPLVEFARYVFFTRYAVQRIRRNHLDDDPFLWNAVIKSYSHGNEPVRALVLFCMMLENG 120

Query: 115 VSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFAR 174
             VDKFS SL+LKAC+R+ L+EEG QIHGLL K+  GS+LFL NCLI++Y+RCG +EFAR
Sbjct: 121 FCVDKFSFSLILKACARVCLVEEGKQIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFAR 180

Query: 175 QLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG 234
           Q+FD+M I+DSVSYNSMIDGYVKSG I+ ARELFDSMP+ ++NLISWNS+L G+AQ K G
Sbjct: 181 QVFDRMPIQDSVSYNSMIDGYVKSGTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDG 240

Query: 235 LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKL 294
           +  A ++FEKMPERDL+SWN+++ G  KCG+++ A +LF++MPKRDV+SW+NMIDGYAKL
Sbjct: 241 IGLALELFEKMPERDLVSWNTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKL 300

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
           G + +AR LFDEMP +DVVA N +M GY +NGY  +ALEIF  MQ +  L PD+ +LV+ 
Sbjct: 301 GDIKVARTLFDEMPDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVA 360

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
           LSAI+QLGH++K  ++H Y  ++  S+ GK  VALIDMYSKCGSIENAI +F+ ++   +
Sbjct: 361 LSAISQLGHVEKAASMHNYFLENGISVTGKVAVALIDMYSKCGSIENAILIFDGVDQKGI 420

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
           DHWNAMI+G+A +GLG+LAF +L+EM RLS++PD ITF G+LNACAHAGLVKEGL+CFEL
Sbjct: 421 DHWNAMISGMARNGLGKLAFGMLLEMHRLSVKPDGITFIGVLNACAHAGLVKEGLICFEL 480

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534
           MR++HKLEP+LQHYGCMVDILG+AG +E A   IE+MP+EPND+IWRTLLSAC+N+EN  
Sbjct: 481 MRKVHKLEPKLQHYGCMVDILGKAGLVEGALKFIEEMPIEPNDIIWRTLLSACQNHENFT 540

Query: 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           +GE +AKHL+ MDS NSSSYVLLSN++A LG+W+ A +VR MMK++NL K+PGCSWIELE
Sbjct: 541 IGELIAKHLMTMDSCNSSSYVLLSNIYARLGLWSAASKVRMMMKKQNLTKVPGCSWIELE 600

Query: 595 GVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVATSC 630
           GVVHEF VRDKS   V +IY +LD     +     C
Sbjct: 601 GVVHEFLVRDKSHPYVSEIYSVLDGFGASNLQVIDC 636


>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
          Length = 615

 Score =  827 bits (2136), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/606 (64%), Positives = 491/606 (81%), Gaps = 4/606 (0%)

Query: 1   MFVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP 60
           M V A+ +QP +S   T+ LL  CKT  DV++IHAR  TTGFIKNT+LTT++V +F++S 
Sbjct: 1   MLVFAHSHQPWSSISPTIQLLGTCKTSEDVSKIHARKGTTGFIKNTNLTTRIVLAFAASR 60

Query: 61  CTPLTEFARYIFFKYHAFREK----KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVS 116
            + L EFAR +F +YH         +DPFLWNA+IK++SHG++P++AL++F LML NGVS
Sbjct: 61  RSYLAEFARCVFHEYHVSSXXSGNVEDPFLWNAVIKSHSHGVEPRKALLLFFLMLKNGVS 120

Query: 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQL 176
           VDKFS SLVLKACSRLG ++EG+Q HG LRK    SDLFLQNCLI LY++CG L FARQ+
Sbjct: 121 VDKFSLSLVLKACSRLGFVKEGMQXHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQV 180

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQ 236
           FD+M  RDSVSYNSMIDGYVK G IESARELFD MP  ++NLISWNS++NGYAQ   G+ 
Sbjct: 181 FDRMSQRDSVSYNSMIDGYVKCGLIESARELFDLMPSEKKNLISWNSMINGYAQRADGVD 240

Query: 237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR 296
            A  +F++MPE+DLISWNS++ G VK G+++DA+ LFDKMP+RDVV+WA M+DGYAKLG 
Sbjct: 241 IASNLFDEMPEKDLISWNSLIDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYAKLGF 300

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           V  A+ LFD+MP+RDVVA N+MM GYV+N Y M+A++IF++M+ E +L PD+ +LVIVLS
Sbjct: 301 VHQAKSLFDQMPQRDVVAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLS 360

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
           AIAQLG + K + +H Y  + +F L GK GVALIDMYSKCGSI+ A+ VFE+IE+ S+DH
Sbjct: 361 AIAQLGRLSKAMDMHLYTVEKKFLLGGKLGVALIDMYSKCGSIQQAMGVFERIENKSIDH 420

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           WNAMI GLAIHGLGE AFD+L+++ER SI+PDDITF G+LNAC+H+GLVKEGLLCFELM+
Sbjct: 421 WNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMK 480

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
           R HK+EP LQHYGCMVDIL R+G IE A+NLIE+MP+EPNDVIWRT L+AC +++    G
Sbjct: 481 RKHKIEPRLQHYGCMVDILSRSGRIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETG 540

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
           E VAKHLI     N SSYVLLSNM+A LGMW + RRVR+MMKER ++K+PGCSWIEL+G 
Sbjct: 541 ELVAKHLILQAGYNPSSYVLLSNMYASLGMWKEVRRVRTMMKERKIQKIPGCSWIELDGS 600

Query: 597 VHEFFV 602
           VHEFFV
Sbjct: 601 VHEFFV 606


>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
          Length = 617

 Score =  822 bits (2122), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/595 (65%), Positives = 481/595 (80%), Gaps = 5/595 (0%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           S   T+ LL +CKT  DV++IHAR+ITTG IKN++L+T++V +F++SP   L EFAR +F
Sbjct: 14  SISPTIQLLGRCKTSEDVSKIHARLITTGLIKNSNLSTRIVLAFAASPRPYLAEFARLVF 73

Query: 73  FKYHAFR-----EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
            +YH        E +DPFLWNA+IK++SHG DPK+AL++FCLML+NGVSVDKFS SLVLK
Sbjct: 74  REYHVCSSSPGGEVEDPFLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLK 133

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           ACSRLG ++ GLQIHG+LRK    SDLFLQNCLI LY++CG L FARQ+FD+M  RDSVS
Sbjct: 134 ACSRLGFVKGGLQIHGILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVS 193

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
           +NSMIDGYVK G IESARELFD MP   +NLISWNS+++GYAQ   G+  A  +F +MPE
Sbjct: 194 FNSMIDGYVKRGLIESARELFDLMPREVKNLISWNSIISGYAQTSDGVDIASNLFAEMPE 253

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
           +DLISWNSM+ G VK G+++DA+ LFD MP+RDVV+WA MIDGYAKLG V  A+ LFD+M
Sbjct: 254 KDLISWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQM 313

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
           P RDVV+ N+MM GYV+N Y M+ALEIF +M+ E +L PD+ +LVIVLSAIAQLG + K 
Sbjct: 314 PHRDVVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKA 373

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
           + +H Y+ + QF L GK GVALIDMYSKCGSI++A+ VFE IE+ S+DHWNAMI GLAIH
Sbjct: 374 MDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIH 433

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           GLGE AFD+L+++ER SI+PDDITF G+LNAC+H+GLVKEGLLCFELMRR HK+EP LQH
Sbjct: 434 GLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQH 493

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
           YGCMVDIL R+G IE A+NLI++MP+EPNDVIWRT L+AC +++    GE V KHLI   
Sbjct: 494 YGCMVDILSRSGSIELAKNLIQEMPIEPNDVIWRTFLTACNHHKEFETGELVGKHLILQA 553

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
             N SSYVLLSNM+A  G W D RR+R+MMKER ++K+PGCSWIEL+G VHEFFV
Sbjct: 554 GYNPSSYVLLSNMYASFGKWKDVRRIRTMMKERKIEKIPGCSWIELDGRVHEFFV 608


>gi|345505230|gb|AEN99839.1| chlororespiratory reduction 4 [Nasturtium officinale]
          Length = 614

 Score =  821 bits (2120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/606 (65%), Positives = 484/606 (79%), Gaps = 5/606 (0%)

Query: 1   MFVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP 60
           M V AN +QPC S  S + L+  CK  NDV +IHAR+ITTGFIKN++LTTK+V +F+ S 
Sbjct: 1   MLVFANSHQPC-SISSIIQLVGSCKNSNDVGKIHARLITTGFIKNSNLTTKIVVAFADSR 59

Query: 61  CTPLTEFARYIFFKYH----AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVS 116
              L EFARY+F +YH    A  + KDPFLWN +IK++SHG+DP+ AL+ FCLML+NG+S
Sbjct: 60  RPYLAEFARYVFREYHVCSFAPGDVKDPFLWNLVIKSHSHGVDPRRALLWFCLMLENGIS 119

Query: 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQL 176
           VDKFS SLVLKACSRLG ++ G+QIHG LRK    SDLFLQNCLI LY++CG L FARQ+
Sbjct: 120 VDKFSFSLVLKACSRLGFLKGGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQI 179

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQ 236
           FD+M  RDSVSYNSMIDGY+K G IESARELFD MP   +NLISWNS+++GYAQ   G+ 
Sbjct: 180 FDRMPQRDSVSYNSMIDGYIKCGLIESARELFDLMPREMKNLISWNSMISGYAQTSDGVN 239

Query: 237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR 296
            A ++F +MPE+DLISWNS+++G VK G+M+DA+ LF  MP+RDVV+WA MIDGYAKLG 
Sbjct: 240 IASKLFAEMPEKDLISWNSLIYGYVKHGRMEDAKDLFHVMPRRDVVTWATMIDGYAKLGF 299

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           V  A+ LFD+MP RDVVA N+MM GYV+N + M+ALEIF +M+ E +L PD+ +LVIVLS
Sbjct: 300 VHKAKTLFDQMPHRDVVAYNSMMAGYVQNRHHMEALEIFSDMEKESHLTPDETTLVIVLS 359

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
           AIAQLG + K + +H Y+ + QF L GK GVALIDMYSKCGSI+ A+ VFE IE+ S+DH
Sbjct: 360 AIAQLGQLSKAMDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQQAMCVFEGIENKSIDH 419

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           WNAMI GLAIHGLGE AF++L+E+ER SIEPD ITF G+LNAC+H+GLVKEGLLCFELMR
Sbjct: 420 WNAMIGGLAIHGLGESAFNILLEIERRSIEPDYITFVGVLNACSHSGLVKEGLLCFELMR 479

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
           R HK+EP LQHYGCMVD+L R G IE A+NLIE+MP+EPNDVIWRT L+AC +++   +G
Sbjct: 480 RKHKIEPRLQHYGCMVDLLSRCGSIELAKNLIEEMPIEPNDVIWRTFLTACNHHKEFEIG 539

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
           E VAKHLI     N SSYVLLSNM+A  G W D R VR+MMKER L+K+PGCSWIEL+G 
Sbjct: 540 ELVAKHLILQAGYNPSSYVLLSNMYASFGRWKDVRNVRTMMKERKLQKVPGCSWIELDGR 599

Query: 597 VHEFFV 602
           VHEFFV
Sbjct: 600 VHEFFV 605


>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
          Length = 612

 Score =  816 bits (2109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/604 (63%), Positives = 487/604 (80%), Gaps = 2/604 (0%)

Query: 1   MFVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP 60
           M V A+ +QP +S   T+ LL  CK   DVN+IHAR+IT GFIKN +LTT++V  F+ S 
Sbjct: 1   MLVFAHSHQPWSSISPTIKLLGSCKNSEDVNKIHARLITNGFIKNPNLTTRIVLDFADSR 60

Query: 61  CTPLTEFARYIFFKYHAFR--EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVD 118
            + L EFAR++F +YH     + +DPFLWNA+IK++SHGLDP++AL++FCLML+ GVSVD
Sbjct: 61  RSYLAEFARFVFHEYHVCSNGDFEDPFLWNAVIKSHSHGLDPRKALLLFCLMLETGVSVD 120

Query: 119 KFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD 178
           KFS SLVLKACSRLG ++EG+QIHG LRK    SDL+LQNCLI LY++CG L +ARQ+FD
Sbjct: 121 KFSLSLVLKACSRLGFVKEGMQIHGFLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFD 180

Query: 179 KMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFA 238
           +M  RDSVSYNSMIDGYVK G IESAR LFD MP  ++NLISWN +++GYAQ   G+  A
Sbjct: 181 RMPRRDSVSYNSMIDGYVKCGMIESARGLFDLMPKEKKNLISWNFMISGYAQRADGVNVA 240

Query: 239 WQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVD 298
            ++F++MPE+DLISWNS++ G VK G+M+DA++LF+KMPKRDVV+WA M+DGYAKLG V 
Sbjct: 241 KKLFDEMPEKDLISWNSLIDGYVKHGRMEDAKSLFNKMPKRDVVTWATMVDGYAKLGFVH 300

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
            A+ LFD MP RDVVA N+M+ GYV+N Y  +A+ IF++M+ E +L PD+ +LVIVLSAI
Sbjct: 301 QAKSLFDRMPLRDVVAYNSMITGYVQNRYHKEAIGIFNDMEKESHLSPDETTLVIVLSAI 360

Query: 359 AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWN 418
           AQLG + K V IH Y+  ++F L GK GVALID YSKCGSI+ +++VFE+IE+ S+DHWN
Sbjct: 361 AQLGRLSKAVDIHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWN 420

Query: 419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRI 478
           AMI GLAIHGLGE AFD+L+++E+ SI+PDDITF G+LNAC+H+GLVKEGLLCFELMRR 
Sbjct: 421 AMIGGLAIHGLGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRK 480

Query: 479 HKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEP 538
           HK+EP+LQHYGCMVDIL R+G IE A+NLIE+MP+EPNDVIWRT L+AC N++    GE 
Sbjct: 481 HKIEPKLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSNHKEFETGEL 540

Query: 539 VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVH 598
           VAKHL      N SS+VLLSNM+A  GMW + RRVR+ MKER L+K+PGCSWIEL+G VH
Sbjct: 541 VAKHLFLQGGYNPSSFVLLSNMYASFGMWKEVRRVRTTMKERKLRKIPGCSWIELDGNVH 600

Query: 599 EFFV 602
           EFFV
Sbjct: 601 EFFV 604


>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
          Length = 617

 Score =  813 bits (2099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/608 (63%), Positives = 489/608 (80%), Gaps = 6/608 (0%)

Query: 1   MFVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP 60
           M V A+ +QP +S   T+ LL  CK   DVN+IHAR++T GFIKN +LTT++V +F++S 
Sbjct: 1   MLVFAHSHQPWSSISPTIKLLGSCKNSEDVNKIHARLVTNGFIKNPNLTTRIVLAFAASR 60

Query: 61  CTPLTEFARYIFFKY--HAFR----EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG 114
                EFAR++F +Y   +F     + +D +LWNA+IK++SHG DP+ AL++FCLML+NG
Sbjct: 61  RPYXVEFARFVFHEYXIRSFSPGGGDXEDXYLWNAVIKSHSHGTDPRRALLLFCLMLENG 120

Query: 115 VSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFAR 174
           VSVDKFS SLVLKACSRLGL++EG+QIHG L+K    SDLFLQNCLI LY++CG+L FAR
Sbjct: 121 VSVDKFSLSLVLKACSRLGLVKEGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFAR 180

Query: 175 QLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG 234
           Q+FD+M  RDSVSYNSMIDGYVK G+ ESARELFD MP   +NLISWNS+++GYAQ   G
Sbjct: 181 QIFDRMPQRDSVSYNSMIDGYVKCGSTESARELFDLMPEEMKNLISWNSMISGYAQTSDG 240

Query: 235 LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKL 294
           +  A ++F +MP++DLISWNSM+ G VK G+++DA+ LFD MP+RDVV+W+ MIDGYAKL
Sbjct: 241 VDIASKLFSEMPDKDLISWNSMIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKL 300

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
           G V  A+ LFD+MP RDVV+ N+M+ GYV+N Y+M+ALEIF +M+ E +L PD+ +LVIV
Sbjct: 301 GFVHQAKTLFDQMPHRDVVSYNSMIAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIV 360

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
           LSAIAQLG + K + +H Y+ + QF L GK GVALIDMYSKCGSI++A+ VF+ IE+ S+
Sbjct: 361 LSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFKGIENKSI 420

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
           DHWNAMI GLAIHGLGE AFD+L+++ER SI+PDDITF GLLNAC+H+GLVKEGLLCFEL
Sbjct: 421 DHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGLLNACSHSGLVKEGLLCFEL 480

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534
           MRR HK+EP LQHYGCMVDIL R+G IE A+NLIE+MP+EPNDVIWRT L+AC +++   
Sbjct: 481 MRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLAACNHHKEFE 540

Query: 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
            GE VAKHLI     N SSYVLLSN++A  G W D RR+R++MKER ++K+PGCSWIEL+
Sbjct: 541 TGELVAKHLIWEAGYNPSSYVLLSNLYASFGKWKDVRRIRTIMKERKIEKVPGCSWIELD 600

Query: 595 GVVHEFFV 602
           G VHEFFV
Sbjct: 601 GRVHEFFV 608


>gi|345505206|gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]
          Length = 594

 Score =  807 bits (2085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/582 (65%), Positives = 477/582 (81%), Gaps = 4/582 (0%)

Query: 28  NDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH----AFREKKD 83
           +D N++HAR+ITTG IKN +LTT++V +F +S  + L EFAR +F++Y+    +  E +D
Sbjct: 6   DDXNKMHARLITTGLIKNPNLTTRIVLAFVASRRSYLAEFARCVFYEYYLCSFSAGEGED 65

Query: 84  PFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHG 143
           P+LWNA+IK+YSHG+DP+ AL++FCLM++NGV VDKFS SLVLKACSRL  ++EG+QIHG
Sbjct: 66  PYLWNAVIKSYSHGIDPRRALLLFCLMIENGVCVDKFSLSLVLKACSRLEFLKEGMQIHG 125

Query: 144 LLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIES 203
            LRK    SDLFLQNCLI LY++CG L FARQ+FD+M  RDSVSYNSMIDGYVK G ++S
Sbjct: 126 FLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLMKS 185

Query: 204 ARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKC 263
           A +LFD MP   +NLISWNS+++GYAQ   GL  A ++F +MPE+DLISWNSM++GCVK 
Sbjct: 186 AHKLFDLMPREIKNLISWNSMISGYAQTADGLNTASKLFSEMPEKDLISWNSMINGCVKH 245

Query: 264 GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV 323
           G+++DA+ LFD MP+RDVV+WA MIDGYAKLG V  A+ LFD+M +RDVVACN+MM GYV
Sbjct: 246 GRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFDQMHQRDVVACNSMMAGYV 305

Query: 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG 383
           +N Y M+ALEIF++M+ + +L PD+ +LVIVLSAIAQLG + K +++H Y+ + +F L G
Sbjct: 306 QNKYHMEALEIFNDMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMHVYIVEKRFPLGG 365

Query: 384 KHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
           K GVALIDM+SKCGSI++AI VFE IE+ S+DHWNAMI GLAIHGLGELAFD+LM++ER 
Sbjct: 366 KLGVALIDMHSKCGSIQHAISVFEGIENKSIDHWNAMIGGLAIHGLGELAFDMLMQIERC 425

Query: 444 SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503
           SI+PD ITF G+LNAC+H+GLVKEGLLCFELMRR H +EP LQHYGC+VD+L R+G IE 
Sbjct: 426 SIQPDXITFIGVLNACSHSGLVKEGLLCFELMRRKHXIEPRLQHYGCLVDVLSRSGSIEL 485

Query: 504 ARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563
           A++LIEDMPMEPNDVIWR+ LSAC  +E    GE VAKHLI     N SSYVLLSNM+A 
Sbjct: 486 AKHLIEDMPMEPNDVIWRSFLSACSTHEEFETGELVAKHLILQAGYNPSSYVLLSNMYAS 545

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDK 605
           LGMW D RRVR MMK+R L K+PGCSWIEL+G VHEFFV+DK
Sbjct: 546 LGMWKDVRRVRMMMKQRKLHKIPGCSWIELDGNVHEFFVQDK 587


>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
          Length = 588

 Score =  806 bits (2083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/576 (67%), Positives = 468/576 (81%), Gaps = 4/576 (0%)

Query: 31  NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH----AFREKKDPFL 86
           + I AR+I TGFI N++LTT++V +F++S    L EFAR +F  YH    A  E +DPFL
Sbjct: 4   SXIXARLIKTGFIXNSNLTTRIVLAFAASRRPYLAEFARCVFQNYHSCSFAHGEVEDPFL 63

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           WNA+IK++SHG+DPK AL+ FCLML+NGVSVDKFS SLVLKACSRLG ++EG+QIHG LR
Sbjct: 64  WNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIHGFLR 123

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           K    SDLFLQNCLI LY++CG L FARQ+FD+M  RDSVSYNSMIDGYVK G I SARE
Sbjct: 124 KTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSARE 183

Query: 207 LFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKM 266
           LFD MP   +NLISWNS+++GYAQ   G+  A ++F +MPE+DLISWNS++ G VK G+M
Sbjct: 184 LFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHGRM 243

Query: 267 DDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNG 326
           +DA+ LF  MP+RDVV+WA MIDGYAKLG V  A+ LFD+MP RDVVA N+MM GYV+N 
Sbjct: 244 EDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNK 303

Query: 327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG 386
           Y+M+ALEIF +M+ E +L PD+ +LVIVLSAIAQLG + K + +H Y+ + QF L GK G
Sbjct: 304 YNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLG 363

Query: 387 VALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE 446
           VALIDMYSKCGSI+ A+ VFE+IE+ S+DHWNAMI GLAIHGLGE AFD+L+E+ER SI+
Sbjct: 364 VALIDMYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLEIERRSIK 423

Query: 447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARN 506
           PDDITF G+LNAC+H+GLVKEGLLCFELMRR HK+EP LQHYGCMVDIL R+G IE A+N
Sbjct: 424 PDDITFVGILNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKN 483

Query: 507 LIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGM 566
           LIE+MPMEPNDVIWRT L+AC +++    GE VAKHLI     N SSYVLLSNM+A  GM
Sbjct: 484 LIEEMPMEPNDVIWRTFLTACSHHKEFETGEVVAKHLILQAGYNPSSYVLLSNMYASFGM 543

Query: 567 WNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
           W DARRVR+MMKER L+K+PGCSWIEL+G VHEFFV
Sbjct: 544 WKDARRVRTMMKERELQKVPGCSWIELDGRVHEFFV 579


>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 606

 Score =  805 bits (2080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/594 (64%), Positives = 477/594 (80%), Gaps = 4/594 (0%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           S  ST+ +L  CKT  DVN+IH  +I TG IKN++LTT++V +F++S    L EFAR +F
Sbjct: 4   SISSTIQVLGSCKTSYDVNKIHGGLIKTGIIKNSNLTTRIVLAFAASRRPYLAEFARCVF 63

Query: 73  FKYHAFR----EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA 128
            +YH       E +DPFLWNA+IK++SHG DP++AL++FCLML+NGVSVDKFS SLVLKA
Sbjct: 64  HEYHVCSFSPGEMEDPFLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSLSLVLKA 123

Query: 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY 188
           CSRLG ++ G+QIHG LRK    SDLFLQNCLI LY++CG L FARQ+FD+M  RDSVSY
Sbjct: 124 CSRLGFVKGGMQIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVSY 183

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER 248
           NSMI+GYVK G IESARELFD MP   +NLISWNS+++GYAQ   G+  A ++F +MPE+
Sbjct: 184 NSMINGYVKCGLIESARELFDLMPREMKNLISWNSMISGYAQTSEGVNIASKLFAEMPEK 243

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           DLISWNSM+ G VK G+++DA+ LFD MP+RDVV+ A MIDGYAKLG V  A+ LFD+MP
Sbjct: 244 DLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMP 303

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            RDVVA N+MM GYV+N   M+ALEIF++M+ E +L PD+ +LVI+LSAIAQLG + K  
Sbjct: 304 LRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKAT 363

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            +H Y+ + QF L GK GVALIDMYSKCGSI++A+ VFE IE+ S+DHWNAMI GLA+HG
Sbjct: 364 DMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVHG 423

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
           LGE AF++L+++ERLSI PDDITF G+LNAC+H+GLVKEGLLCFELMRR HK+EP LQHY
Sbjct: 424 LGESAFNMLLQIERLSIIPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHY 483

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
           GCMVDIL R+G IE A+NLIE+MP+EPNDVIWRT L+AC +++    GE VAKHLI    
Sbjct: 484 GCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAG 543

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
            N SSYVLLSNM+A  GMW D RRVR+MMKER ++K+PGCSWIEL+G VHEFFV
Sbjct: 544 YNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFV 597


>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
 gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g45350, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
 gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
          Length = 613

 Score =  805 bits (2078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/594 (65%), Positives = 480/594 (80%), Gaps = 4/594 (0%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           S  ST+ +L  CKT +DVNQIH R+I TG IKN++LTT++V +F+SS    L +FAR +F
Sbjct: 11  SISSTIHVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVF 70

Query: 73  FKYH----AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA 128
            +YH    +F E +DPFLWNA+IK++SHG DP++AL++ CLML+NGVSVDKFS SLVLKA
Sbjct: 71  HEYHVCSFSFGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKA 130

Query: 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY 188
           CSRLG ++ G+QIHG L+K    SDLFLQNCLI LY++CG L  +RQ+FD+M  RDSVSY
Sbjct: 131 CSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSY 190

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER 248
           NSMIDGYVK G I SARELFD MP+  +NLISWNS+++GYAQ   G+  A ++F  MPE+
Sbjct: 191 NSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEK 250

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           DLISWNSM+ G VK G+++DA+ LFD MP+RDVV+WA MIDGYAKLG V  A+ LFD+MP
Sbjct: 251 DLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMP 310

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            RDVVA N+MM GYV+N Y M+ALEIF +M+ E +L PDD +LVIVL AIAQLG + K +
Sbjct: 311 HRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAI 370

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            +H Y+ + QF L GK GVALIDMYSKCGSI++A+ VFE IE+ S+DHWNAMI GLAIHG
Sbjct: 371 DMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHG 430

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
           LGE AFD+L+++ERLS++PDDITF G+LNAC+H+GLVKEGLLCFELMRR HK+EP LQHY
Sbjct: 431 LGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHY 490

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
           GCMVDIL R+G IE A+NLIE+MP+EPNDVIWRT L+AC +++    GE VAKHLI    
Sbjct: 491 GCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAG 550

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
            N SSYVLLSNM+A  GMW D RRVR+MMKER ++K+PGCSWIEL+G VHEFFV
Sbjct: 551 YNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFV 604


>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
          Length = 606

 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/594 (65%), Positives = 480/594 (80%), Gaps = 4/594 (0%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           S  ST+ +L  CKT +DVNQIH R+I TG IKN++LTT++V +F+SS    L +FAR +F
Sbjct: 4   SISSTIHVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVF 63

Query: 73  FKYH----AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA 128
            +YH    +F E +DPFLWNA+IK++SHG DP++AL++ CLML+NGVSVDKFS SLVLKA
Sbjct: 64  HEYHVCSFSFGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKA 123

Query: 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY 188
           CSRLG ++ G+QIHG L+K    SDLFLQNCLI LY++CG L  +RQ+FD+M  RDSVSY
Sbjct: 124 CSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSY 183

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER 248
           NSMIDGYVK G I SARELFD MP+  +NLISWNS+++GYAQ   G+  A ++F  MPE+
Sbjct: 184 NSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEK 243

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           DLISWNSM+ G VK G+++DA+ LFD MP+RDVV+WA MIDGYAKLG V  A+ LFD+MP
Sbjct: 244 DLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMP 303

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            RDVVA N+MM GYV+N Y M+ALEIF +M+ E +L PDD +LVIVL AIAQLG + K +
Sbjct: 304 HRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAI 363

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            +H Y+ + QF L GK GVALIDMYSKCGSI++A+ VFE IE+ S+DHWNAMI GLAIHG
Sbjct: 364 DMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHG 423

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
           LGE AFD+L+++ERLS++PDDITF G+LNAC+H+GLVKEGLLCFELMRR HK+EP LQHY
Sbjct: 424 LGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHY 483

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
           GCMVDIL R+G IE A+NLIE+MP+EPNDVIWRT L+AC +++    GE VAKHLI    
Sbjct: 484 GCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAG 543

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
            N SSYVLLSNM+A  GMW D RRVR+MMKER ++K+PGCSWIEL+G VHEFFV
Sbjct: 544 YNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFV 597


>gi|345505204|gb|AEN99826.1| chlororespiratory reduction 4, partial [Aethionema cordifolium]
          Length = 587

 Score =  803 bits (2073), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/586 (66%), Positives = 472/586 (80%), Gaps = 10/586 (1%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH---- 76
           +R+C+      QIHAR+I TGFI+N++LTT++V +F++S    L EFAR +F  YH    
Sbjct: 3   IRRCE------QIHARLIKTGFIQNSNLTTRIVLAFAASRRPYLAEFARCVFQNYHSCSF 56

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
           A  E +DPFLWNA+IK++SHG+DPK AL+ FCLML+NGVSVDKFS SLVLKACSRLG ++
Sbjct: 57  AHGEVEDPFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQ 116

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           EG+QIHG LRK    SDLFLQNCLI LY++CG L FARQ+FD+M  RDSVSYNSMIDGYV
Sbjct: 117 EGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYV 176

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
           K G I SARELFD MP   +NLISWNS+++GYAQ   G+  A ++F +MPE+DLISWNS+
Sbjct: 177 KCGLIGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSL 236

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
           + G VK G+M+DA+ LF  MP+RDVV+WA MIDGYAKLG V  A+ LFD+MP RDVVA N
Sbjct: 237 IDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYN 296

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
           +MM GYV+N Y M+ALEIF+NM+ + +L PD+ +LVIVLSAIAQLG + K +++++Y+ +
Sbjct: 297 SMMAGYVQNKYHMEALEIFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMNKYIVE 356

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
             F L GK GVALIDM+SKCGSI+ AI VFE I++ S+DHWNAMI GLAIHG GELAFD+
Sbjct: 357 KSFPLGGKLGVALIDMHSKCGSIQQAISVFEGIKNKSIDHWNAMIGGLAIHGHGELAFDM 416

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
           LM++ER SI+PDDITF G+LNAC+H+GLVKEGLL FELMRR HK+EP LQHYGC+VDIL 
Sbjct: 417 LMQIERCSIKPDDITFIGVLNACSHSGLVKEGLLSFELMRRKHKIEPRLQHYGCIVDILS 476

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556
           R+G IE A++LIEDMPMEPNDVIWRT L ACRN +   +GE VAKHLI     N SSYVL
Sbjct: 477 RSGSIELAKHLIEDMPMEPNDVIWRTFLIACRNRKEFEIGELVAKHLILQAGYNPSSYVL 536

Query: 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
           LSNM+A LGMW D RRVR MMK+R L K+PGCSWIEL+G VHEFFV
Sbjct: 537 LSNMYASLGMWKDVRRVRMMMKQRKLHKIPGCSWIELDGNVHEFFV 582


>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
          Length = 579

 Score =  800 bits (2066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/569 (66%), Positives = 466/569 (81%)

Query: 34  HARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKT 93
           HAR+I TG IKN++LTT++V +F++SP   L EFAR++F +YH   E +DP+LWNA+IK+
Sbjct: 2   HARLIKTGIIKNSNLTTRIVLAFAASPRPYLAEFARFVFHEYHYGGEVEDPYLWNAMIKS 61

Query: 94  YSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSD 153
           +SHG DP+ AL++FCLML+ GV VDKFS SLV+KACSRLG ++ GLQIHG L+K    SD
Sbjct: 62  HSHGTDPRRALLLFCLMLEIGVPVDKFSLSLVMKACSRLGFVKGGLQIHGFLKKTGLWSD 121

Query: 154 LFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPI 213
           LFLQNCLI LY++CG L FARQ+FD+M  RDSVSYNSMIDGYVK G+IESA ELFD MP 
Sbjct: 122 LFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIESASELFDLMPR 181

Query: 214 RERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALF 273
             +NLISWNS+++GYAQ   G+  A ++F +MPE+DLISWNSM+ G VK G+++DA+ LF
Sbjct: 182 EMKNLISWNSLISGYAQTSEGVDIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLF 241

Query: 274 DKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE 333
           D +P+RDVV+WA MIDGYAKLG V  A+ LFD+MP RDVVA N+MM GYV+N + M+ALE
Sbjct: 242 DMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAYNSMMAGYVQNRFHMEALE 301

Query: 334 IFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMY 393
           IF +M+ E +L PD+ +LVIVLSAIAQLG + K + +H Y+ + QF L GK GVALIDMY
Sbjct: 302 IFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFLLGGKLGVALIDMY 361

Query: 394 SKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
           SKCGSI++A+ VFE IE+ S+DHWNAMI GLAIHGLGE AFD+L+++ER SI+PDDITF 
Sbjct: 362 SKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFV 421

Query: 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPM 513
           G+LNAC+H+GLVKEGLLCFELMRR HK+EP LQHYGCMVDIL R+G IE A+NLIE+MP+
Sbjct: 422 GVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPI 481

Query: 514 EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV 573
           EPNDVIWRT L+AC +++    GE VAKHLI     N SSYVLLSNM+A  GMW D RRV
Sbjct: 482 EPNDVIWRTFLTACSHHKEFETGELVAKHLILQADYNPSSYVLLSNMYASFGMWKDVRRV 541

Query: 574 RSMMKERNLKKLPGCSWIELEGVVHEFFV 602
           R+MMKER ++K+PGCSWIEL+G VHEFFV
Sbjct: 542 RTMMKERKIEKIPGCSWIELDGXVHEFFV 570


>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
          Length = 597

 Score =  798 bits (2062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/587 (64%), Positives = 474/587 (80%), Gaps = 4/587 (0%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LL  CKT +DVN+IHAR+ITTG IKN++LTT++V +F+SS    L EFAR +F ++H + 
Sbjct: 2   LLGSCKTADDVNKIHARLITTGVIKNSNLTTRIVLAFASSRRQYLAEFARCVFEEHHVYS 61

Query: 80  ----EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
               E +DPFLWNA+IK++SHG DP+ +L +FCLML+NGVSVDKFS SLVLKACSRLG +
Sbjct: 62  LPYGETEDPFLWNAVIKSHSHGTDPRRSLFLFCLMLENGVSVDKFSLSLVLKACSRLGFV 121

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
           + G+ IHG LRK    SDLFLQNCLI LY++CG L ++RQ+FD+M  RDSVSYNSMIDGY
Sbjct: 122 KAGMXIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSMIDGY 181

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
           VK G IESARELFD MP   +NLISWN +++GYAQ   G+  A ++F +MPE+DLISWNS
Sbjct: 182 VKCGLIESARELFDLMPKEMKNLISWNCLISGYAQTSDGVNIASKLFSEMPEKDLISWNS 241

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           M+ G VK G+++DA+ LFD MP+RDV++WA MIDGYAKLG +  A+ LFD++P RDVVA 
Sbjct: 242 MIDGYVKHGRIEDAKDLFDVMPRRDVITWATMIDGYAKLGFIHQAKTLFDQIPHRDVVAY 301

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           N+MM GYV+N Y M+ALE+F  M+ E +L PD+ +LVIVLSAIAQLG + K + +H Y+ 
Sbjct: 302 NSMMAGYVQNKYHMEALELFIKMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHFYIV 361

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           K QF + GK GVALIDMYSKCGSI++A+ VF+ +E+ ++DHWNA+I GLAIHGLG  AFD
Sbjct: 362 KKQFFIGGKLGVALIDMYSKCGSIQHAMLVFKGLENKNIDHWNAIIGGLAIHGLGGPAFD 421

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           +L+++ERLSI+PDDITF G+LNAC+H+GLVKEGLLCFELMRR HK+EP LQHYGCMVDIL
Sbjct: 422 MLLQIERLSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDIL 481

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
            R+G IE A+ LIE MP+EPNDVIWRT L+AC +++   +GE VAKHLI     N SSYV
Sbjct: 482 SRSGSIELAKILIEKMPIEPNDVIWRTFLTACSHHKEFEMGELVAKHLILQAGYNPSSYV 541

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
           LLSNM+A  GMW D RRVR+MMKER ++K+PGCSWIEL+G VHEFFV
Sbjct: 542 LLSNMYASCGMWKDVRRVRTMMKERKIQKIPGCSWIELDGRVHEFFV 588


>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
          Length = 584

 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/570 (65%), Positives = 469/570 (82%), Gaps = 2/570 (0%)

Query: 35  ARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH--AFREKKDPFLWNAIIK 92
           AR ITTGFIKN +LTT++V SFS+S  + L EFAR IF +YH  ++  ++DPFLWNA+IK
Sbjct: 7   ARXITTGFIKNPNLTTRIVLSFSASRRSYLAEFARCIFHEYHVSSYSVEEDPFLWNAVIK 66

Query: 93  TYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGS 152
           ++SHG+DP+ AL++FCLM++N VSVDKFS SLVLKACSRLG ++ G+Q+HG LRK    S
Sbjct: 67  SFSHGVDPRNALLLFCLMIENSVSVDKFSISLVLKACSRLGFVDFGMQVHGFLRKTGIYS 126

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           DLFLQNCLI LY++CG L FARQ+FD+M  RDSVSYNSMIDGYVK G IESARELFD MP
Sbjct: 127 DLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMP 186

Query: 213 IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
             ++NLISWN +++GY Q + G+  A ++F++MPE+DLISWNS++ G VK  +++DA++L
Sbjct: 187 REKKNLISWNCMISGYTQSEDGVNVASKLFDEMPEKDLISWNSLIDGYVKHRRIEDAKSL 246

Query: 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
           FD MP++DVV+WA MIDGYAKLG V  A++LFDEMP+RDVVA N+MM GYV+N Y  +A+
Sbjct: 247 FDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQRDVVAYNSMMAGYVQNKYHAEAI 306

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDM 392
            IF++M+ E +L PD+ +LVIVLSAIAQLG + K V IH Y+  ++F L GK GVALID 
Sbjct: 307 GIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALIDT 366

Query: 393 YSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITF 452
           YSKCGSI+ +++VFE+IE+ S+DHWNAMI GLAIHGLGE AFD+L+++E+ SI+PDDITF
Sbjct: 367 YSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPDDITF 426

Query: 453 TGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP 512
            G+LNAC+H+GLVKEGLLCFELMRR HK+EP+LQHYGCMVDIL R+G IE A+NLIE+MP
Sbjct: 427 IGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGSIELAKNLIEEMP 486

Query: 513 MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARR 572
           +EPNDVIWRT L+AC N++    GE VAKHL      N SS+VLLSNM+A  GMW + RR
Sbjct: 487 IEPNDVIWRTFLTACSNHKEFETGELVAKHLFLQGGYNPSSFVLLSNMYASFGMWKEVRR 546

Query: 573 VRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
           VR+ MKER L+K+PGCSWIEL+G VHEFFV
Sbjct: 547 VRTTMKERKLRKIPGCSWIELDGNVHEFFV 576


>gi|345505212|gb|AEN99830.1| chlororespiratory reduction 4, partial [Brassica oleracea]
          Length = 590

 Score =  781 bits (2017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/590 (63%), Positives = 471/590 (79%), Gaps = 6/590 (1%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTP----LTEFARYIFFKY 75
            L  CKT +D+N++HAR+ITTG IKN  LTT++V +F+S+  +     L EFAR +F ++
Sbjct: 1   FLGSCKTSHDLNKLHARLITTGLIKNPDLTTRIVLAFASASASSRRPFLAEFARCVFHEH 60

Query: 76  HAFR--EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLG 133
           H     E +DPFLWN +IK++SHG+DP++AL + CLML++ V VDKFS SL LKACSRLG
Sbjct: 61  HVSSSGEVEDPFLWNVVIKSHSHGVDPRKALFLLCLMLESSVPVDKFSLSLALKACSRLG 120

Query: 134 LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMID 193
            ++EG Q+HG L K    SDLFLQNCLI LY++CG+L FARQ+FD+M  RDSVSYNSMID
Sbjct: 121 FVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGFLGFARQVFDRMPERDSVSYNSMID 180

Query: 194 GYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISW 253
           GYVK G +ESA ELFD MP  +RNLI+WNS++ GYAQ   G+  A ++F++MPE+DLISW
Sbjct: 181 GYVKCGLVESAGELFDLMPREKRNLITWNSMIGGYAQRADGVDVAEKLFDEMPEKDLISW 240

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
           NSM+ G VK G+++DA+ LF+ MP+RDVV+WA MIDGY KLG V +A+ LFD+MP RDVV
Sbjct: 241 NSMIGGYVKHGRIEDAKGLFNVMPRRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHRDVV 300

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
           A N+MM GYV+N Y M+ALE+F++M+ E +L PD+ SLVIVLSAIAQLG + K + +H Y
Sbjct: 301 AYNSMMSGYVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAIAQLGRLSKAIDMHLY 360

Query: 374 LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
           + + QF L+GK GVALIDMYSKCGSI++A++VFE IE  S+DHWNAMI GLA+HGLGE A
Sbjct: 361 IVEKQFPLSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESA 420

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493
           FD+L ++ER SI+PD ITF G+LNAC+H+GLVKEGLLCFELMRR HK+EP LQHYGCMVD
Sbjct: 421 FDMLFQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVD 480

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS 553
           IL R+G I+ ARNLIE MP+EPNDVIWRT L+AC +++    GE VAKHLI     N SS
Sbjct: 481 ILARSGSIKLARNLIEGMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILXGGYNPSS 540

Query: 554 YVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVR 603
           YVLLSNM+A  GMW D RRVR+MMKE+N++K+PGCSWIEL+G VHEF  R
Sbjct: 541 YVLLSNMYASNGMWKDVRRVRTMMKEKNIEKIPGCSWIELDGRVHEFLCR 590


>gi|345505214|gb|AEN99831.1| chlororespiratory reduction 4 [Brassica rapa]
          Length = 612

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/604 (62%), Positives = 473/604 (78%), Gaps = 8/604 (1%)

Query: 8   NQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTP---- 63
           + P +S   T+ LL  CKT +D+N++HAR+ITTG IKN  LTT++V +F+S+  +     
Sbjct: 9   HHPWSSISPTIHLLGTCKTSHDLNKLHARLITTGLIKNPDLTTRIVLAFASASASASSRR 68

Query: 64  --LTEFARYIFFKYHAFR--EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDK 119
             L EFAR +F ++H     E +DPFLWN +IK++SHG+DP++AL + CLML+NGV VDK
Sbjct: 69  PFLAEFARCVFHEHHVSSSGEVEDPFLWNVVIKSHSHGVDPRKALFLLCLMLENGVPVDK 128

Query: 120 FSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK 179
           FS SL LKACSRLG ++EG Q+HG L K    SDLFLQNCLI LY++CG L FARQ+FD+
Sbjct: 129 FSFSLALKACSRLGFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGCLGFARQVFDR 188

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAW 239
           M  RDSVSYNSMIDGY+K G +ESA ELF  MP  +RNLI+WNS++ GYAQ   G+  A 
Sbjct: 189 MPQRDSVSYNSMIDGYLKCGLVESAGELFGLMPREKRNLITWNSMIGGYAQRADGVNVAA 248

Query: 240 QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDI 299
           ++F++MPE+DLISWNSM+ G VK G+++DA+ LFD MP+RDVV+WA MIDGY KLG V  
Sbjct: 249 KLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHE 308

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           A+ LFD+MP RDVV  N+MM G V+N Y M+ALE+F++M+ E +L PD+ SLVIVLSA A
Sbjct: 309 AKTLFDQMPHRDVVVYNSMMSGXVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAXA 368

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
           QLG + K + +H Y+ + QF  +GK GVALIDMYSKCGSI++A++VFE IE  S+DHWNA
Sbjct: 369 QLGRLSKAIDMHLYIVEKQFPSSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNA 428

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           MI GLA+HGLGE AFD+L+++ER SI+PD ITF G+LNAC+H+GLVKEGLLCFELMRR H
Sbjct: 429 MIGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKH 488

Query: 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPV 539
           K+EP LQHYGCMVDIL R+G IE A+NLIE MP+EPNDVIWRT L+AC +++    GE V
Sbjct: 489 KIEPRLQHYGCMVDILARSGSIELAKNLIEGMPIEPNDVIWRTFLTACSHHKEFETGELV 548

Query: 540 AKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHE 599
           AKHLI     N SSYVLLSNM+A  GMW D RRVR+MMKE+N++K+PGCSWIEL+G VHE
Sbjct: 549 AKHLILQAGYNPSSYVLLSNMYASNGMWKDVRRVRTMMKEKNIEKIPGCSWIELDGRVHE 608

Query: 600 FFVR 603
           F  R
Sbjct: 609 FLCR 612


>gi|345505234|gb|AEN99841.1| chlororespiratory reduction 4, partial [Raphanus sativus]
          Length = 577

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/576 (64%), Positives = 465/576 (80%), Gaps = 7/576 (1%)

Query: 35  ARMITTGFIKNTHLTTKLVASFSSSPCTP---LTEFARYIFFKYHAFR----EKKDPFLW 87
           AR+ TTGFIKN +LTT++V +F+SS  +    L EFAR +F +YH+      E KDPFLW
Sbjct: 2   ARLXTTGFIKNPNLTTRIVLAFASSSSSRRPFLAEFARCVFHEYHSRSVSPGEIKDPFLW 61

Query: 88  NAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRK 147
           NA+IK++SHG DP++AL++FCLML+NGV VDKFS SLVLKACSRLG  +EG+Q+HG L K
Sbjct: 62  NAVIKSHSHGADPRKALLLFCLMLENGVLVDKFSMSLVLKACSRLGFAKEGMQVHGFLIK 121

Query: 148 VAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAREL 207
               SDLFLQNCLI LY++CG L FARQ+FD+M  RDSVSYNSMIDGYVK G +ESA EL
Sbjct: 122 SRTWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLVESAGEL 181

Query: 208 FDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMD 267
           FD MP  +RNLI+WNS++ GYAQ   G+  A ++F++MPE+DLISWNSM+ G VK G+++
Sbjct: 182 FDLMPREKRNLITWNSMIGGYAQRADGVNVASKLFDEMPEKDLISWNSMIGGYVKHGRIE 241

Query: 268 DAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGY 327
           DA+ LFD MP+RDVV+WA MIDGY KLG V  A+ LFD+MP RDVVA N+MM G+V+N Y
Sbjct: 242 DAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHQAKTLFDQMPHRDVVAYNSMMSGFVQNRY 301

Query: 328 SMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV 387
            ++ALE+F++M+ E +L PD+ +LVIVLSAIAQLG + K + +H Y+ + +F L+GK GV
Sbjct: 302 HIEALEVFNHMEKESHLSPDETTLVIVLSAIAQLGRLTKAIDMHLYIVEKRFLLSGKLGV 361

Query: 388 ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP 447
           ALIDMYSKCGSI++A++VFE IE  S+DHWNAMI GLA+HGLGE AFD+L+++ER SI+P
Sbjct: 362 ALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLLQIERRSIKP 421

Query: 448 DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNL 507
           D ITF G+LNAC+H+GLVKEGLLCFELMRR HK+EP LQHYGCMVDIL R+G IE A+NL
Sbjct: 422 DHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIELAKNL 481

Query: 508 IEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMW 567
           IE+MP+EPNDVIWRT L+AC +++    GE VAKHLI     N SSYVLLSNM+A  GMW
Sbjct: 482 IEEMPIEPNDVIWRTFLNACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASNGMW 541

Query: 568 NDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVR 603
            D RRVR+MMKE+ ++KLPGCSWIEL+G VHEF  R
Sbjct: 542 KDVRRVRTMMKEKKIEKLPGCSWIELDGRVHEFLCR 577


>gi|359486281|ref|XP_003633424.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g45350, chloroplastic-like [Vitis vinifera]
          Length = 704

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/561 (64%), Positives = 464/561 (82%), Gaps = 6/561 (1%)

Query: 55  SFSSSPCTPLTEFARYIFFKYH---AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLML 111
           +FSSS   PL EFARY+F   H    +R++ + F+WNAIIK++SH  DP+E  V+F LML
Sbjct: 49  NFSSSSHKPLVEFARYLFMSRHFGRKYRKQDNSFIWNAIIKSFSHKEDPREVFVIFNLML 108

Query: 112 DNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLE 171
           ++GV VDKFS SLVLKACSRLGLI+EG+QIHGLL K+  GSD+FLQNCL+ LY+RCG L 
Sbjct: 109 ESGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLLGKMEIGSDVFLQNCLMCLYLRCGCLG 168

Query: 172 FARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQL 231
             RQLFD+M  +DSVS+NSMIDGYVK G ++SA ELFD MP+ ++ LISWNS+++ YA+ 
Sbjct: 169 IVRQLFDRMMKKDSVSFNSMIDGYVKHGMVKSAWELFDVMPMEQKILISWNSMISEYARS 228

Query: 232 KSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGY 291
           +  L+ AW++FE+MP++DLISWNSM++GCVKCGKM++   LF++MPKR VVS ANM++G+
Sbjct: 229 EERLKVAWELFEEMPKKDLISWNSMINGCVKCGKMENDHHLFNRMPKRXVVSXANMVNGH 288

Query: 292 AKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDAS 350
           AKLG +DIAR LF EMP+ DV++CNAMM  YV+NGY M++L+ F +M   EL+L  D+A+
Sbjct: 289 AKLGEIDIARGLFVEMPEMDVISCNAMMARYVQNGYLMESLKNFHDMLSKELFL--DNAT 346

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE 410
           L+I LSAIAQLGH D+GVA+H Y+E + FSL+ K GVALID Y+KCGSI+NA+ VFE I+
Sbjct: 347 LLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGVALIDTYAKCGSIDNALSVFEDID 406

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470
           + S+DHWNA+++GLAIHGLGE+AF+L MEME+L ++P+DITF G+LNAC HAGLVKEGL+
Sbjct: 407 NKSIDHWNAILSGLAIHGLGEVAFELFMEMEKLFVKPNDITFIGVLNACNHAGLVKEGLM 466

Query: 471 CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNY 530
           CFELM+R+ K+EP+LQHY CMVDILG+AGH+E  +  +E M +EPNDV+WRTLLSACRN+
Sbjct: 467 CFELMKRVDKVEPKLQHYVCMVDILGQAGHVEETKKFVEKMSIEPNDVVWRTLLSACRNH 526

Query: 531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSW 590
           EN  +GEPVAKHLI +DS N SSYVLLSN++AG G+WND  R+R MMK+R+LKK+PGCS 
Sbjct: 527 ENFTIGEPVAKHLISVDSYNLSSYVLLSNIYAGFGIWNDVHRIRMMMKQRDLKKIPGCSQ 586

Query: 591 IELEGVVHEFFVRDKSRLQVR 611
           IELEG VH+FFVRDKS  Q +
Sbjct: 587 IELEGNVHKFFVRDKSHPQAK 607


>gi|345505224|gb|AEN99836.1| chlororespiratory reduction 4, partial [Lepidium virginicum]
          Length = 594

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/583 (61%), Positives = 457/583 (78%), Gaps = 4/583 (0%)

Query: 24  CKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR---- 79
           CKT +DVN+IHA++ITTGFIKNT+LTT++V +F+SS    L EFAR +F +++ +     
Sbjct: 3   CKTSDDVNKIHAQLITTGFIKNTNLTTRIVLAFASSRHQHLAEFARCVFEEHYVYSFPYG 62

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           E +DPFLWNA++K++SHG DP+ AL++FCLML+NGVSVDKFS+SLVLKACSRLG ++ G+
Sbjct: 63  ETEDPFLWNAVMKSHSHGTDPRRALLLFCLMLENGVSVDKFSSSLVLKACSRLGFVKGGM 122

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           QIHG LRK    SDLFLQNCLI+LY++CG L FARQ+FD+M  RDSVSYN   +G VK G
Sbjct: 123 QIHGFLRKTGLWSDLFLQNCLIALYLKCGCLGFARQIFDRMPKRDSVSYNPXXEGXVKCG 182

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
            IESARELF       +N  S   + +GYAQ   GL  A ++F +MPE+DLISWNS++ G
Sbjct: 183 LIESARELFXLXXXEXKNXXSXXCMXSGYAQTSDGLXIASKLFSEMPEKDLISWNSIIDG 242

Query: 260 CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM 319
            VK G+ +DA+ L+D MP+RDV++WA MIDGY KLG V  A+ L D +P RDVVA N+MM
Sbjct: 243 YVKHGRXEDAKDLYDVMPRRDVITWATMIDGYVKLGFVHQAKTLLDXIPHRDVVAYNSMM 302

Query: 320 GGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF 379
            GYV+N Y M+ALE+F +M+ E +L PD+ +LVIVLSAIAQLG + K V ++ Y+ K QF
Sbjct: 303 AGYVQNKYHMEALELFGDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDMYLYVVKKQF 362

Query: 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLME 439
            L GK  V+LIDMYSKCGSI++A+ VFE +E+ ++DHWNA+I GLAIHG G  AF++L++
Sbjct: 363 FLGGKLWVSLIDMYSKCGSIQHAMLVFEGLENKTIDHWNAIIGGLAIHGRGGPAFNMLLQ 422

Query: 440 MERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG 499
           +ER SI+PDDITFTG+LNAC+H+G VKEGLLCFELMRR HK+EP LQHYGCMVDIL R+G
Sbjct: 423 IERSSIKPDDITFTGVLNACSHSGFVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSG 482

Query: 500 HIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559
            IE A+NLIE MP+EPNDVIWRT L+AC +++   +GE VAKHLI     N SSYVLLSN
Sbjct: 483 SIELAKNLIEKMPIEPNDVIWRTFLTACSHHKEFEMGELVAKHLILQADYNPSSYVLLSN 542

Query: 560 MFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
           M+A  GMW D R VR+MMKER + K+PGCS IEL+G VHEFFV
Sbjct: 543 MYASFGMWKDVRGVRTMMKERKIPKIPGCSSIELDGRVHEFFV 585


>gi|345505226|gb|AEN99837.1| chlororespiratory reduction 4, partial [Lobularia maritima]
          Length = 570

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/570 (63%), Positives = 453/570 (79%), Gaps = 1/570 (0%)

Query: 35  ARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTY 94
           AR+  TG I +++LTTK+V +FS S  T L++FAR IF +YH   E +DPFLWNA+IK++
Sbjct: 1   ARLXXTGLIXSSNLTTKIVLAFSDSQRTYLSDFARCIFHEYHHHEEVEDPFLWNAVIKSH 60

Query: 95  SHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDL 154
           SHG+DP++AL + C M++N V VDKFS SLV KACSRLG  +EG+QIHG L K    SDL
Sbjct: 61  SHGVDPRQALFLLCSMIENNVPVDKFSLSLVTKACSRLGFAKEGMQIHGFLTKTVICSDL 120

Query: 155 FLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR 214
           FLQNCLI LY++C  L +ARQ+FD+M  RDSVSYNSMIDGYVK G IESARELFD MP  
Sbjct: 121 FLQNCLIGLYIKCSCLGYARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPKE 180

Query: 215 ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFD 274
           ++NLISWNS++ GYAQ + G+  A ++F +MPE+DLISWNS++ G VK G+++DA+ LFD
Sbjct: 181 KKNLISWNSMIGGYAQREDGVDIASKLFAEMPEKDLISWNSLIDGYVKHGRIEDAKGLFD 240

Query: 275 KMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEI 334
            MP+RDVV+WA MIDGYAKLG V  A+ LFD MP RDVVA N+MMGGYV+N Y M+ALE+
Sbjct: 241 VMPRRDVVTWATMIDGYAKLGFVHKAKSLFDVMPHRDVVAYNSMMGGYVQNKYHMEALEV 300

Query: 335 FDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYS 394
           F +M+ E +L PD+ +LVIVLSAIAQLG + K V IH Y+ + +F L+GK GVALIDMYS
Sbjct: 301 FYDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIVEKRFLLDGKLGVALIDMYS 360

Query: 395 KCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTG 454
           KCGSI+ A+ VFE IE+ S+DHWNAMI GLA+HGLGE AFD+LME+E+  I+PD ITF G
Sbjct: 361 KCGSIQQAMAVFEGIENKSIDHWNAMIGGLAVHGLGEAAFDMLMEIEKRFIKPDYITFVG 420

Query: 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPME 514
           +LNAC+H+GLVKEGLLCFELMRR HK+EP LQHYGCMVD+L R+G IE A++LI +MP+E
Sbjct: 421 VLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDLLARSGSIELAKHLISEMPIE 480

Query: 515 PNDVIWRTLLSACRNYENLNVGE-PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV 573
           PNDVIWRT L+AC +++     E  VA++LI     N SSYVLLSNM+A   MW D RRV
Sbjct: 481 PNDVIWRTFLNACSHHKEFETRELVVAENLILQAGYNPSSYVLLSNMYASFEMWEDVRRV 540

Query: 574 RSMMKERNLKKLPGCSWIELEGVVHEFFVR 603
           R+MMKER ++K+PGCSWIEL+G VHEF  R
Sbjct: 541 RTMMKERKIEKVPGCSWIELDGKVHEFLCR 570


>gi|255541270|ref|XP_002511699.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548879|gb|EEF50368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 474

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/472 (69%), Positives = 392/472 (83%), Gaps = 5/472 (1%)

Query: 1   MFVSANYNQ-PCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSS 59
           M + A+ NQ P NS  STL+L+RKCKT +D+NQ+HARMITTGFIKNT LTTK++ S SSS
Sbjct: 1   MLICASTNQQPWNSPLSTLILVRKCKTASDINQVHARMITTGFIKNTSLTTKIILSLSSS 60

Query: 60  PCTPLTEFARYIFFKYHAF----REKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGV 115
           P   L EFARY FF  HA+    +EK+DPFLWNA+IKT+SHG DPK+AL++F LML NGV
Sbjct: 61  PNVALHEFARYFFFTRHAYIIGAQEKEDPFLWNAVIKTHSHGNDPKQALIIFSLMLQNGV 120

Query: 116 SVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQ 175
            VDKFS SLVLKACSRLGL++EG+QIHGLLRK+ FGSD+FLQNCLI LYV+C  +++ARQ
Sbjct: 121 FVDKFSVSLVLKACSRLGLVKEGMQIHGLLRKLKFGSDVFLQNCLIGLYVKCRCIDYARQ 180

Query: 176 LFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL 235
           +FDKM +RDSVSYNSMI GYVK GNI+ AR+L+D MPI  RNL+SWNS+L+GY +  +G 
Sbjct: 181 VFDKMPMRDSVSYNSMIAGYVKHGNIDLARQLYDVMPINWRNLVSWNSLLSGYMRSDNGF 240

Query: 236 QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG 295
           + AW +FEKMPERDLISWNSM+ GC K G+M+DAQALFD MP+R ++SWANM+DGYAKLG
Sbjct: 241 ELAWNLFEKMPERDLISWNSMIDGCAKRGRMEDAQALFDTMPERTIISWANMVDGYAKLG 300

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
            VDIAR+ FD MP RDVVACNAMM GYV+NGY M+AL IF +MQ E  L PD+A+L+IVL
Sbjct: 301 YVDIARKFFDNMPDRDVVACNAMMSGYVQNGYCMEALGIFHDMQRESNLCPDNATLLIVL 360

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
           SAIAQLGHI+KGV IH Y++++ FSL  K GVALIDMYSKCGS ENA+ VFE I+  + D
Sbjct: 361 SAIAQLGHIEKGVEIHCYIQENGFSLEEKLGVALIDMYSKCGSAENAMLVFEGIKGKTAD 420

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKE 467
           HWNAMINGLAIHG+GELA   L+EMER+  +PDDITF GLLNAC HAGL+KE
Sbjct: 421 HWNAMINGLAIHGMGELALHFLIEMERVGSKPDDITFIGLLNACGHAGLMKE 472



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 128/276 (46%), Gaps = 49/276 (17%)

Query: 231 LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDG 290
           +K G+Q    + +     D+   N ++   VKC  +D A+ +FDKMP RD VS+ +MI G
Sbjct: 140 VKEGMQIHGLLRKLKFGSDVFLQNCLIGLYVKCRCIDYARQVFDKMPMRDSVSYNSMIAG 199

Query: 291 YAKLGRVDIARRLFDEMPK--RDVVACNAMMGGYVR--NGYSMKALEIFDNMQCELYLHP 346
           Y K G +D+AR+L+D MP   R++V+ N+++ GY+R  NG+ + A  +F+ M        
Sbjct: 200 YVKHGNIDLARQLYDVMPINWRNLVSWNSLLSGYMRSDNGFEL-AWNLFEKMP------- 251

Query: 347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVF 406
                                       E+D  S N     ++ID  +K G +E+A  +F
Sbjct: 252 ----------------------------ERDLISWN-----SMIDGCAKRGRMEDAQALF 278

Query: 407 EQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVK 466
           + + + ++  W  M++G A  G  ++A      M     + D +    +++     G   
Sbjct: 279 DTMPERTIISWANMVDGYAKLGYVDIARKFFDNMP----DRDVVACNAMMSGYVQNGYCM 334

Query: 467 EGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIE 502
           E L  F  M+R   L P+      ++  + + GHIE
Sbjct: 335 EALGIFHDMQRESNLCPDNATLLIVLSAIAQLGHIE 370



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 103/235 (43%), Gaps = 38/235 (16%)

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKG 367
           K D    NA++  +       +AL IF  M Q  +++  D  S+ +VL A ++LG + +G
Sbjct: 86  KEDPFLWNAVIKTHSHGNDPKQALIIFSLMLQNGVFV--DKFSVSLVLKACSRLGLVKEG 143

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
           + IH  L K +F  +      LI +Y KC  I+ A +VF+++       +N+MI G   H
Sbjct: 144 MQIHGLLRKLKFGSDVFLQNCLIGLYVKCRCIDYARQVFDKMPMRDSVSYNSMIAGYVKH 203

Query: 428 GLGELA------------------------------FDLLMEMERLSIEPDDITFTGLLN 457
           G  +LA                              F+L   +     E D I++  +++
Sbjct: 204 GNIDLARQLYDVMPINWRNLVSWNSLLSGYMRSDNGFELAWNLFEKMPERDLISWNSMID 263

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP 512
            CA  G +++    F+ M      E  +  +  MVD   + G+++ AR   ++MP
Sbjct: 264 GCAKRGRMEDAQALFDTMP-----ERTIISWANMVDGYAKLGYVDIARKFFDNMP 313



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           WNA+I   +     + A  +   M +  +  D  + + +L AC+  GLVKEG+    L+R
Sbjct: 92  WNAVIKTHSHGNDPKQALIIFSLMLQNGVFVDKFSVSLVLKACSRLGLVKEGMQIHGLLR 151

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
           ++ K   ++    C++ +  +   I+ AR + + MPM  + V + ++++    + N+++ 
Sbjct: 152 KL-KFGSDVFLQNCLIGLYVKCRCIDYARQVFDKMPMR-DSVSYNSMIAGYVKHGNIDLA 209


>gi|255541290|ref|XP_002511709.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548889|gb|EEF50378.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 450

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 297/428 (69%), Positives = 356/428 (83%), Gaps = 4/428 (0%)

Query: 44  KNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAF----REKKDPFLWNAIIKTYSHGLD 99
           +NT LTTK++ S SSSP   L EFARY FF  HA+    +EK+DPFLWNA+IKT+SHG D
Sbjct: 21  QNTSLTTKIILSLSSSPNVALHEFARYFFFTRHAYIIGAQEKEDPFLWNAVIKTHSHGND 80

Query: 100 PKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNC 159
           PK+AL++F LML NGV VDKFS SLVLKACSRLGL++EG+QIHGLLRK+ FGSD+FLQNC
Sbjct: 81  PKQALIIFSLMLQNGVFVDKFSVSLVLKACSRLGLVKEGMQIHGLLRKLKFGSDVFLQNC 140

Query: 160 LISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLI 219
           LI LYV+C  +++ARQ+FDKM +RDSVSYNSMI GYVK GNI+ AR+L+D MPI  RNL+
Sbjct: 141 LIGLYVKCRCIDYARQVFDKMPMRDSVSYNSMIAGYVKHGNIDLARQLYDVMPINWRNLV 200

Query: 220 SWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR 279
           SWNS+L+GY +  +G + AW +FEKMPERDLISWNSM+ GC K G+M+DAQALFD MP+R
Sbjct: 201 SWNSLLSGYMRSDNGFELAWNLFEKMPERDLISWNSMIDGCAKRGRMEDAQALFDTMPER 260

Query: 280 DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQ 339
            ++SWANM+DGYAKLG VDIAR+ FD MP RDVVACNAMM GYV+NGY M+AL IF +MQ
Sbjct: 261 TIISWANMVDGYAKLGYVDIARKFFDNMPDRDVVACNAMMSGYVQNGYCMEALGIFHDMQ 320

Query: 340 CELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSI 399
            E  L PD+A+L+IVLSAIAQLGHI+KGV IH Y++++ FSL  K GVALIDMYSKCGS 
Sbjct: 321 RESNLCPDNATLLIVLSAIAQLGHIEKGVEIHCYIQENGFSLEEKLGVALIDMYSKCGSA 380

Query: 400 ENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
           ENA+ VFE I+  + DHWNAMINGLAIHG+GELA   L+EMER+  +PDDITF GLLNAC
Sbjct: 381 ENAMLVFEGIKGKTADHWNAMINGLAIHGMGELALHFLIEMERVGSKPDDITFIGLLNAC 440

Query: 460 AHAGLVKE 467
            HAGL+KE
Sbjct: 441 GHAGLMKE 448



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 128/276 (46%), Gaps = 49/276 (17%)

Query: 231 LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDG 290
           +K G+Q    + +     D+   N ++   VKC  +D A+ +FDKMP RD VS+ +MI G
Sbjct: 116 VKEGMQIHGLLRKLKFGSDVFLQNCLIGLYVKCRCIDYARQVFDKMPMRDSVSYNSMIAG 175

Query: 291 YAKLGRVDIARRLFDEMPK--RDVVACNAMMGGYVR--NGYSMKALEIFDNMQCELYLHP 346
           Y K G +D+AR+L+D MP   R++V+ N+++ GY+R  NG+ + A  +F+ M        
Sbjct: 176 YVKHGNIDLARQLYDVMPINWRNLVSWNSLLSGYMRSDNGFEL-AWNLFEKMP------- 227

Query: 347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVF 406
                                       E+D  S N     ++ID  +K G +E+A  +F
Sbjct: 228 ----------------------------ERDLISWN-----SMIDGCAKRGRMEDAQALF 254

Query: 407 EQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVK 466
           + + + ++  W  M++G A  G  ++A      M     + D +    +++     G   
Sbjct: 255 DTMPERTIISWANMVDGYAKLGYVDIARKFFDNMP----DRDVVACNAMMSGYVQNGYCM 310

Query: 467 EGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIE 502
           E L  F  M+R   L P+      ++  + + GHIE
Sbjct: 311 EALGIFHDMQRESNLCPDNATLLIVLSAIAQLGHIE 346



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 103/235 (43%), Gaps = 38/235 (16%)

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKG 367
           K D    NA++  +       +AL IF  M Q  +++  D  S+ +VL A ++LG + +G
Sbjct: 62  KEDPFLWNAVIKTHSHGNDPKQALIIFSLMLQNGVFV--DKFSVSLVLKACSRLGLVKEG 119

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
           + IH  L K +F  +      LI +Y KC  I+ A +VF+++       +N+MI G   H
Sbjct: 120 MQIHGLLRKLKFGSDVFLQNCLIGLYVKCRCIDYARQVFDKMPMRDSVSYNSMIAGYVKH 179

Query: 428 GLGELA------------------------------FDLLMEMERLSIEPDDITFTGLLN 457
           G  +LA                              F+L   +     E D I++  +++
Sbjct: 180 GNIDLARQLYDVMPINWRNLVSWNSLLSGYMRSDNGFELAWNLFEKMPERDLISWNSMID 239

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP 512
            CA  G +++    F+ M      E  +  +  MVD   + G+++ AR   ++MP
Sbjct: 240 GCAKRGRMEDAQALFDTMP-----ERTIISWANMVDGYAKLGYVDIARKFFDNMP 289



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           WNA+I   +     + A  +   M +  +  D  + + +L AC+  GLVKEG+    L+R
Sbjct: 68  WNAVIKTHSHGNDPKQALIIFSLMLQNGVFVDKFSVSLVLKACSRLGLVKEGMQIHGLLR 127

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
           ++ K   ++    C++ +  +   I+ AR + + MPM  + V + ++++    + N+++ 
Sbjct: 128 KL-KFGSDVFLQNCLIGLYVKCRCIDYARQVFDKMPMR-DSVSYNSMIAGYVKHGNIDLA 185

Query: 537 EPV 539
             +
Sbjct: 186 RQL 188


>gi|296089169|emb|CBI38872.3| unnamed protein product [Vitis vinifera]
          Length = 379

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 246/371 (66%), Positives = 306/371 (82%), Gaps = 3/371 (0%)

Query: 1   MFVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP 60
           M +SA  NQP NST  TL+LL K KTL+DVNQIH+R+ITTGFI N  LTT+++ +FSSS 
Sbjct: 1   MLISATSNQPWNSTHPTLILLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSS 60

Query: 61  CTPLTEFARYIFFKYH---AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV 117
             PL EFARY+F   H     R++ +PFLWNAIIK++SHG DP+EA V+F LML+NGV V
Sbjct: 61  HKPLVEFARYLFMSRHFGRKHRKQDNPFLWNAIIKSFSHGEDPREAFVIFNLMLENGVCV 120

Query: 118 DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLF 177
           DKFS SLVLKACSRLGLI+EG+QIHGLL ++  GSD+FLQNCL+ LY+RCG L  ARQLF
Sbjct: 121 DKFSFSLVLKACSRLGLIKEGMQIHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLF 180

Query: 178 DKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF 237
           D+M  RDSVS+NSMIDGYVK G ++SARELFD MP+ ++NLISWNS+++GYA+ + GL+ 
Sbjct: 181 DRMMKRDSVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRV 240

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
           AW++FE+MP+RDLISWNSM+ GCVKCGKM++A  LF++MPKRDVVSWANM+DGYAKLG +
Sbjct: 241 AWELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNQMPKRDVVSWANMVDGYAKLGEI 300

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
           DIAR LFDEMP+RDV++CNAMM GYV+NG+ M+AL  F +M     L PD+A+L+I LSA
Sbjct: 301 DIARGLFDEMPERDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSA 360

Query: 358 IAQLGHIDKGV 368
           IAQLGH D+G 
Sbjct: 361 IAQLGHFDEGA 371



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 165/381 (43%), Gaps = 62/381 (16%)

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGY---LEFARQLF--DKMGIRDSVSYNSMI-D 193
           QIH  L    F ++  L   +I  +    +   +EFAR LF     G +     N  + +
Sbjct: 32  QIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLFMSRHFGRKHRKQDNPFLWN 91

Query: 194 GYVKS-GNIESARELFDSMPIRERNLI-----SWNSVLNGYAQL---KSGLQFAWQIFEK 244
             +KS  + E  RE F    +   N +     S++ VL   ++L   K G+Q    +   
Sbjct: 92  AIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLLGRM 151

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
               D+   N ++   ++CG +  A+ LFD+M KRD VS+ +MIDGY K G V  AR LF
Sbjct: 152 EIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSARELF 211

Query: 305 DEMP--KRDVVACNAMMGGYVRNGYSMK-ALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
           D MP  ++++++ N+M+ GY R+   ++ A E+F+ M                       
Sbjct: 212 DVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMP---------------------- 249

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
                        ++D  S N     ++ID   KCG +ENA  +F Q+    V  W  M+
Sbjct: 250 -------------KRDLISWN-----SMIDGCVKCGKMENAHHLFNQMPKRDVVSWANMV 291

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
           +G A  G  ++A  L  EM     E D I+   ++      G + E L  F  M    +L
Sbjct: 292 DGYAKLGEIDIARGLFDEMP----ERDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKEL 347

Query: 482 EPELQHYGCMVDILGRAGHIE 502
            P+       +  + + GH +
Sbjct: 348 FPDNATLLITLSAIAQLGHFD 368



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 103/236 (43%), Gaps = 54/236 (22%)

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH---- 371
           NA++  +       +A  IF N+  E  +  D  S  +VL A ++LG I +G+ IH    
Sbjct: 91  NAIIKSFSHGEDPREAFVIF-NLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLLG 149

Query: 372 --------------------------------RYLEKDQFSLNGKHGVALIDMYSKCGSI 399
                                           R +++D  S N     ++ID Y K G +
Sbjct: 150 RMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFN-----SMIDGYVKHGMV 204

Query: 400 ENAIKVFE--QIEDGSVDHWNAMINGLAIHGLG-ELAFDLLMEMERLSIEPDDITFTGLL 456
           ++A ++F+   +E  ++  WN+MI+G A    G  +A++L  EM +     D I++  ++
Sbjct: 205 KSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPK----RDLISWNSMI 260

Query: 457 NACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP 512
           + C   G ++     F  M +      ++  +  MVD   + G I+ AR L ++MP
Sbjct: 261 DGCVKCGKMENAHHLFNQMPK-----RDVVSWANMVDGYAKLGEIDIARGLFDEMP 311



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 32/152 (21%)

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           WNA+I   +       AF +   M    +  D  +F+ +L AC+  GL+KEG+    L+ 
Sbjct: 90  WNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLLG 149

Query: 477 RIH------------------------------KLEPELQHYGCMVDILGRAGHIEAARN 506
           R+                                ++ +   +  M+D   + G +++AR 
Sbjct: 150 RMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSARE 209

Query: 507 LIEDMPMEPNDVI-WRTLLSA-CRNYENLNVG 536
           L + MPME  ++I W +++S   R+ E L V 
Sbjct: 210 LFDVMPMEQKNLISWNSMISGYARSEEGLRVA 241


>gi|297828245|ref|XP_002882005.1| hypothetical protein ARALYDRAFT_903974 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327844|gb|EFH58264.1| hypothetical protein ARALYDRAFT_903974 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 408

 Score =  520 bits (1338), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/366 (66%), Positives = 300/366 (81%)

Query: 237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR 296
            A ++F +MPE+DLISWNSM+ G VK G+++DA+ LFD MP+RDVV+ A MIDGYAKLG 
Sbjct: 34  IASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGF 93

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           V  A+ LFD+MP RDVVA N+MM GYV+N   M+ALEIF++M+ E +L PD+ +LVI+LS
Sbjct: 94  VHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILS 153

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
           AIAQLG + K   +H Y+ + QF L GK GVALIDMYSKCGSI++A+ VFE IE+ S+DH
Sbjct: 154 AIAQLGRLSKATDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDH 213

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           WNAMI GLA+HGLGE AF++L+++ERLSI PDDITF G+LNAC+H+GLVKEGLLCFELMR
Sbjct: 214 WNAMIGGLAVHGLGESAFNMLLQIERLSIIPDDITFVGVLNACSHSGLVKEGLLCFELMR 273

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
           R HK+EP LQHYGCMVDIL R+G IE A+NLIE+MP+EPNDVIWRT L+AC +++    G
Sbjct: 274 RKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETG 333

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
           E VAKHLI     N SSYVLLSNM+A  GMW D RRVR+MMKER ++K+PGCSWIEL+G 
Sbjct: 334 ELVAKHLILQAGYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGR 393

Query: 597 VHEFFV 602
           VHEFFV
Sbjct: 394 VHEFFV 399



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 155/340 (45%), Gaps = 80/340 (23%)

Query: 163 LYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWN 222
           L  RC     A +LF +M  +D +S+NSMIDGYVK G IE A+ LFD MP   R++++  
Sbjct: 26  LKCRCN-CSIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMP--RRDVVTCA 82

Query: 223 SVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV 282
           ++++GYA+L    Q A  +F++MP RD++++NSM+ G V+     +A  +F+ M K   +
Sbjct: 83  TMIDGYAKLGFVHQ-AKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHL 141

Query: 283 S----------------------------------------WANMIDGYAKLGRVDIARR 302
           S                                           +ID Y+K G +  A  
Sbjct: 142 SPDETTLVIILSAIAQLGRLSKATDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAML 201

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           +F+ +  + +   NAM+GG   +G    A  +   ++  L + PDD + V VL+A +  G
Sbjct: 202 VFEGIENKSIDHWNAMIGGLAVHGLGESAFNMLLQIE-RLSIIPDDITFVGVLNACSHSG 260

Query: 363 HIDKGVAIHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
            + +G+     +  K +     +H   ++D+ S+ GSI                      
Sbjct: 261 LVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSI---------------------- 298

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461
                    ELA +L+ EM    IEP+D+ +   L AC+H
Sbjct: 299 ---------ELAKNLIEEM---PIEPNDVIWRTFLTACSH 326



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 80  EKKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
           E K    WNA+I   + HGL  + A  M   +    +  D  +   VL ACS  GL++EG
Sbjct: 207 ENKSIDHWNAMIGGLAVHGLG-ESAFNMLLQIERLSIIPDDITFVGVLNACSHSGLVKEG 265

Query: 139 LQIHGLL-RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI 182
           L    L+ RK      L    C++ +  R G +E A+ L ++M I
Sbjct: 266 LLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPI 310


>gi|297828247|ref|XP_002882006.1| hypothetical protein ARALYDRAFT_903976 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327845|gb|EFH58265.1| hypothetical protein ARALYDRAFT_903976 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 412

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/366 (66%), Positives = 300/366 (81%)

Query: 237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR 296
            A ++F +MPE+DLISWNSM+ G VK G+++DA+ LFD MP+RDVV+ A MIDGYAKLG 
Sbjct: 38  IASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGF 97

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           V  A+ LFD+MP RDVVA N+MM GYV+N   M+ALEIF++M+ E +L PD+ +LVI+LS
Sbjct: 98  VHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILS 157

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
           AIAQLG + K   +H Y+ + QF L GK GVALIDMYSKCGSI++A+ VFE IE+ S+DH
Sbjct: 158 AIAQLGRLSKATDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDH 217

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           WNAMI GLA+HGLGE AF++L+++ERLSI PDDITF G+LNAC+H+GLVKEGLLCFELMR
Sbjct: 218 WNAMIGGLAVHGLGESAFNMLLQIERLSIIPDDITFVGVLNACSHSGLVKEGLLCFELMR 277

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
           R HK+EP LQHYGCMVDIL R+G IE A+NLIE+MP+EPNDVIWRT L+AC +++    G
Sbjct: 278 RKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETG 337

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
           E VAKHLI     N SSYVLLSNM+A  GMW D RRVR+MMKER ++K+PGCSWIEL+G 
Sbjct: 338 ELVAKHLILQAGYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGR 397

Query: 597 VHEFFV 602
           VHEFFV
Sbjct: 398 VHEFFV 403



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 158/349 (45%), Gaps = 80/349 (22%)

Query: 163 LYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWN 222
           L  RC     A +LF +M  +D +S+NSMIDGYVK G IE A+ LFD MP   R++++  
Sbjct: 30  LKCRCN-CSIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMP--RRDVVTCA 86

Query: 223 SVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV 282
           ++++GYA+L    Q A  +F++MP RD++++NSM+ G V+     +A  +F+ M K   +
Sbjct: 87  TMIDGYAKLGFVHQ-AKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHL 145

Query: 283 S----------------------------------------WANMIDGYAKLGRVDIARR 302
           S                                           +ID Y+K G +  A  
Sbjct: 146 SPDETTLVIILSAIAQLGRLSKATDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAML 205

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           +F+ +  + +   NAM+GG   +G    A  +   ++  L + PDD + V VL+A +  G
Sbjct: 206 VFEGIENKSIDHWNAMIGGLAVHGLGESAFNMLLQIE-RLSIIPDDITFVGVLNACSHSG 264

Query: 363 HIDKGVAIHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
            + +G+     +  K +     +H   ++D+ S+ GSI                      
Sbjct: 265 LVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSI---------------------- 302

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470
                    ELA +L+ EM    IEP+D+ +   L AC+H    + G L
Sbjct: 303 ---------ELAKNLIEEM---PIEPNDVIWRTFLTACSHHKEFETGEL 339



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 80  EKKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
           E K    WNA+I   + HGL  + A  M   +    +  D  +   VL ACS  GL++EG
Sbjct: 211 ENKSIDHWNAMIGGLAVHGLG-ESAFNMLLQIERLSIIPDDITFVGVLNACSHSGLVKEG 269

Query: 139 LQIHGLL-RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI 182
           L    L+ RK      L    C++ +  R G +E A+ L ++M I
Sbjct: 270 LLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPI 314


>gi|356495177|ref|XP_003516456.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g45350, chloroplastic-like [Glycine max]
          Length = 426

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 243/491 (49%), Positives = 325/491 (66%), Gaps = 73/491 (14%)

Query: 1   MFVSANYN---QPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFS 57
           M V A+++   QP  S   TL  L KC T   VNQ+HARMITTGFIKN  L  KLV SF 
Sbjct: 1   MLVCASFSSSHQPWASPIPTLTTLPKCTTTEQVNQLHARMITTGFIKNPSLAAKLVLSFI 60

Query: 58  SSPCTPLTEFARYIFFKYHAFRE-KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVS 116
           SSP  PL EFARY+F+ +HAF +   DPF WN +I+++SHG +P+ ALV+ CLM++ GV 
Sbjct: 61  SSPHEPLVEFARYVFYMHHAFHDFCNDPFFWNPLIRSHSHGREPRGALVLLCLMIEYGVR 120

Query: 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQL 176
           +D +S SLVLKAC+++GL+ E +Q+HGLL K+ FGSD+FLQNCLI L             
Sbjct: 121 LDGYSFSLVLKACAKVGLVREXVQVHGLLWKMNFGSDVFLQNCLIVL------------- 167

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQ 236
                             +V+ G +E AR                               
Sbjct: 168 ------------------FVRCGCVELAR------------------------------- 178

Query: 237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMI----DGYA 292
              Q+F++MP+RD++S+NSM+ G VKCG ++ A+ LFD M +R++++W +MI    DG A
Sbjct: 179 ---QVFDRMPDRDVVSYNSMIVGYVKCGAVERARELFDGMEERNLITWNSMIGGLIDGXA 235

Query: 293 KLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLV 352
           K G V  A RLFDEMP+RDV +CN+MM GYV+NG  ++AL+IF +M+    + PDD +L+
Sbjct: 236 KSGDVLAATRLFDEMPRRDVNSCNSMMAGYVQNGCCIEALKIFYDMKRSTNVVPDDTTLL 295

Query: 353 IVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG 412
           IV++A AQLGH++ GV +  Y+ +  +SLNGK GVALIDMYSKCGSIENAI VFE +E  
Sbjct: 296 IVITAFAQLGHVEDGVVVRHYIMEKGYSLNGKLGVALIDMYSKCGSIENAISVFENVEQK 355

Query: 413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCF 472
            VDHW+AMI GL IHG+ E+ F+ LMEM R+S+ PDDITF G+L+AC HAG++KEGL+CF
Sbjct: 356 CVDHWSAMIGGLDIHGMDEMTFEFLMEMGRISVIPDDITFIGVLSACRHAGMLKEGLICF 415

Query: 473 ELMRRIHKLEP 483
           ELM++ +KLEP
Sbjct: 416 ELMQKAYKLEP 426



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 153/359 (42%), Gaps = 81/359 (22%)

Query: 221 WNSVLNGYA---QLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDD---AQALFD 274
           WN ++  ++   + +  L     + E     D  S++ +L  C K G + +      L  
Sbjct: 91  WNPLIRSHSHGREPRGALVLLCLMIEYGVRLDGYSFSLVLKACAKVGLVREXVQVHGLLW 150

Query: 275 KMP-KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE 333
           KM    DV     +I  + + G V++AR++FD MP RDVV+ N+M+ GYV+ G   +A E
Sbjct: 151 KMNFGSDVFLQNCLIVLFVRCGCVELARQVFDRMPDRDVVSYNSMIVGYVKCGAVERARE 210

Query: 334 IFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMY 393
           +FD M+                                   E++  + N   G  LID  
Sbjct: 211 LFDGME-----------------------------------ERNLITWNSMIG-GLIDGX 234

Query: 394 SKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMER-LSIEPDDITF 452
           +K G +  A ++F+++    V+  N+M+ G   +G    A  +  +M+R  ++ PDD T 
Sbjct: 235 AKSGDVLAATRLFDEMPRRDVNSCNSMMAGYVQNGCCIEALKIFYDMKRSTNVVPDDTTL 294

Query: 453 TGLLNACAHAGLVKEGLLCFE-LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM 511
             ++ A A  G V++G++    +M + + L  +L     ++D+  + G IE A ++ E++
Sbjct: 295 LIVITAFAQLGHVEDGVVVRHYIMEKGYSLNGKLG--VALIDMYSKCGSIENAISVFENV 352

Query: 512 PME----------------------------------PNDVIWRTLLSACRNYENLNVG 536
             +                                  P+D+ +  +LSACR+   L  G
Sbjct: 353 EQKCVDHWSAMIGGLDIHGMDEMTFEFLMEMGRISVIPDDITFIGVLSACRHAGMLKEG 411



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 110/240 (45%), Gaps = 12/240 (5%)

Query: 347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVF 406
           D  S  +VL A A++G + + V +H  L K  F  +      LI ++ +CG +E A +VF
Sbjct: 122 DGYSFSLVLKACAKVGLVREXVQVHGLLWKMNFGSDVFLQNCLIVLFVRCGCVELARQVF 181

Query: 407 EQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVK 466
           +++ D  V  +N+MI G    G  E A +L   ME  ++   +    GL++  A +G V 
Sbjct: 182 DRMPDRDVVSYNSMIVGYVKCGAVERARELFDGMEERNLITWNSMIGGLIDGXAKSGDVL 241

Query: 467 EGLLCFELMRR--IHKLEPELQHY---GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWR 521
                F+ M R  ++     +  Y   GC ++ L     ++ + N++      P+D    
Sbjct: 242 AATRLFDEMPRRDVNSCNSMMAGYVQNGCCIEALKIFYDMKRSTNVV------PDDTTLL 295

Query: 522 TLLSACRNYENLNVGEPVAKHLIGMDSS-NSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580
            +++A     ++  G  V  +++    S N    V L +M++  G   +A  V   ++++
Sbjct: 296 IVITAFAQLGHVEDGVVVRHYIMEKGYSLNGKLGVALIDMYSKCGSIENAISVFENVEQK 355


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 241/593 (40%), Positives = 356/593 (60%), Gaps = 41/593 (6%)

Query: 28  NDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLW 87
            +V Q+HA  + T    +  ++++L+A +S      L  +AR IF +     +++    W
Sbjct: 27  QEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLG-YARSIFDRI----QRRSLIHW 81

Query: 88  NAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRK 147
           N IIK Y       + +V+F  ++   +  D F+   V+K C+RLG+++EG QIHGL  K
Sbjct: 82  NTIIKCYVENQFSHDGIVLFHELVHEYLP-DNFTLPCVIKGCARLGVVQEGKQIHGLALK 140

Query: 148 VAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAREL 207
           + FGSD+F+Q  L+++Y +CG                                I+ AR++
Sbjct: 141 IGFGSDVFVQGSLVNMYSKCG-------------------------------EIDCARKV 169

Query: 208 FDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMD 267
           FD M   +++++ WNS+++GYA+    +  A Q+FE+MPERD  SW  ++ G  KCGK++
Sbjct: 170 FDGMI--DKDVVLWNSLIDGYARCGE-IDIALQLFEEMPERDAFSWTVLVDGLSKCGKVE 226

Query: 268 DAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGY 327
            A+ LFD+MP R++VSW  MI+GY K G  D A  LF +MP  D+V  N M+ GY  NG 
Sbjct: 227 SARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQ 286

Query: 328 SMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV 387
            M A+++F  M  +L   P  A+LV VLSA++ L  + KG  IH Y+EK+ F L+G  G 
Sbjct: 287 FMDAVKMF-FMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGT 345

Query: 388 ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP 447
           +LI+MY+KCG IE+A+ VF  I+   V HW A+I GL IHG+   A  L +EM +  ++P
Sbjct: 346 SLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKP 405

Query: 448 DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNL 507
           + I F G+LNAC HAGLV +G   F++M   +K+EP L+HYGC+VDIL RAGH+E A+N 
Sbjct: 406 NAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNT 465

Query: 508 IEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMW 567
           IE+MP+ PN VIW +LL   RN+  +++GE  A+ +I +       Y+LLSNM+A  GMW
Sbjct: 466 IENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMW 525

Query: 568 NDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
                VR MM +R  +K PGCS +E +G +HEF V D S  Q ++IY  +  M
Sbjct: 526 EKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEM 578


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 247/606 (40%), Positives = 371/606 (61%), Gaps = 12/606 (1%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           L LL KCK+++ + QI ++M+ TG I++   +++L+A  + S    L ++   I F    
Sbjct: 10  LSLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDL-DYCTNILFN--- 65

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLD-NGVSVDKFSASLVLKACSRLGLIE 136
                + F WN  I+ +    +P+EA+V++  +L  +G   D ++  L+ KAC+RL LI 
Sbjct: 66  -TRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIR 124

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G +I G +  + F SD+F+ N +I L V CG L+ AR++FDK  +RD VS+NSMI+GYV
Sbjct: 125 MGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYV 184

Query: 197 KSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKS---GLQFAWQIFEKMPERDLI 251
           + G    A   +  M +   + + ++   V++  AQL+    G +    I E   +  + 
Sbjct: 185 RRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVP 244

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
             N+++   +KCG ++ A+ LFD M  + +VSW  M+ GYA+ G +D+A +LFDEMP +D
Sbjct: 245 LANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKD 304

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           VV  NAM+GGYV      +AL +F+ MQ  + ++PD+ ++V  LSA +QLG +D G+ IH
Sbjct: 305 VVPWNAMIGGYVHANRGKEALALFNEMQA-MNINPDEVTMVSCLSACSQLGALDVGIWIH 363

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
            Y+EK + SLN   G ALIDMY+KCG I  AI+VF+++   +   W A+I+GLA+HG   
Sbjct: 364 HYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAH 423

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            A     EM   S+ PD++TF GLL+AC H GLV+EG   F  M     L P+L+HY CM
Sbjct: 424 GAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCM 483

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551
           VD+LGRAG +E A  LI+ MP+E + V+W  L  ACR + N+ +GE  A  L+ MD  +S
Sbjct: 484 VDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDS 543

Query: 552 SSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVR 611
             YVLL+NM+    MW +A + R +M++R ++K PGCS IE+ G+V+EF VRDKS  Q  
Sbjct: 544 GIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSE 603

Query: 612 DIYYML 617
            IY  L
Sbjct: 604 QIYECL 609


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 252/627 (40%), Positives = 369/627 (58%), Gaps = 16/627 (2%)

Query: 2   FVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFS-SSP 60
            ++AN  Q  N + +  +L+ KC     + Q+HA M+ TG   +    TKL  + + SSP
Sbjct: 19  ILTANNEQKSNPS-TVPILIDKCANKKHLKQLHAHMLRTGLFFDPPSATKLFTACALSSP 77

Query: 61  CTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV-DK 119
            +   ++A  +F +      + + + WN +I+ ++    P + L++F  ML       + 
Sbjct: 78  SS--LDYACKVFDQI----PRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNS 131

Query: 120 FSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK 179
           ++   V+KA + +  +  G  IHG++ K +FGSDLF+ N LI  Y   G L+ A  +F K
Sbjct: 132 YTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSK 191

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQF 237
           +  +D VS+NSMI G+V+ G+ E A +LF  M +     N ++   VL+  A+ +  L+F
Sbjct: 192 IVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAK-RIDLEF 250

Query: 238 A-WQ---IFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAK 293
             W    I     + +LI  N+ML   VKCG ++DA+ LFDKM ++D+VSW  MIDGYAK
Sbjct: 251 GRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAK 310

Query: 294 LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI 353
           +G  D ARR+FD MP+ D+ A NA++  Y +NG   +AL IF  +Q      P++ +L  
Sbjct: 311 VGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLAS 370

Query: 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
            L+A AQLG +D G  IH Y++K    LN     +LIDMYSKCG +E A++VF  +E   
Sbjct: 371 TLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRD 430

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE 473
           V  W+AMI GLA+HG G  A DL  +M+   ++P+ +TFT LL AC+H+GLV EG L F 
Sbjct: 431 VFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFN 490

Query: 474 LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENL 533
            MR ++ + P  +HY CMVDILGRAG +E A  LIE MP+ P+  +W  LL ACR Y N+
Sbjct: 491 QMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNV 550

Query: 534 NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
            + E     L+  DS+N  +YVLLSN++A  G W+   R+R  MK   L+K PGCS IE+
Sbjct: 551 ELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEV 610

Query: 594 EGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            G++HEF V D S     +IY  LD +
Sbjct: 611 NGIIHEFLVGDNSHPLSTEIYSKLDEI 637


>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 640

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 241/633 (38%), Positives = 370/633 (58%), Gaps = 47/633 (7%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLT-TKLVASFSSSPCTPLTEFARYIFFKYHAF 78
           LL++C++L  +  IHA ++ +G I ++ LT  KL+  +S             + + +  F
Sbjct: 9   LLKQCRSLKTLTTIHAHLLISGSIASSDLTLNKLLRLYSKFGA---------VSYAHKLF 59

Query: 79  REKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
            E  +P  FLW A+I  ++     + A   F  M    +    F+ + VLKA SRLG I+
Sbjct: 60  DETPEPNSFLWTALIHGFTENNQYENAFAFFIKMHRENIVPLNFTIASVLKAVSRLGRIK 119

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           +G  ++GL  +  +  DL ++N +I L++RCG +  ARQ+FD+M  RD+VS+NSMI GY 
Sbjct: 120 DGDLVYGLAVRCGYEFDLVVKNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITGYG 179

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISW--- 253
            +G ++ AR+LFD M   ERN+ISW S++ GY +    L+ A  +FE+MPE+DL SW   
Sbjct: 180 NNGRVDIARKLFDRM--EERNVISWTSMIQGYVKAGDLLE-ARVLFERMPEKDLASWKVM 236

Query: 254 ----------------------------NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWA 285
                                       N M+ GC K G+MD A+  FD+M +R+V SW 
Sbjct: 237 VSAYMSVGNLVAARNLFELMPIHDVGTWNLMISGCCKAGEMDAAKEFFDRMQERNVASWV 296

Query: 286 NMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLH 345
            +IDGY K+G VD AR +FD+MP++++VA + M+GGY + G+   +L+++   + E  + 
Sbjct: 297 MIIDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLYKTFK-EQGIK 355

Query: 346 PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKV 405
           PD+   + ++SA +QLG  D   ++           N +   +LIDMY+KCG+IE A++V
Sbjct: 356 PDETFALGIISACSQLGVPDTAESVICDFVGPSLFPNLQVVTSLIDMYAKCGNIERAVQV 415

Query: 406 FEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLV 465
           FE ++   +  ++ +I   A HGL E A  L  EM++ +I+PD + F G+L AC H GLV
Sbjct: 416 FEMVDQKDLHCYSTVITAFANHGLSEDAISLFSEMQKANIKPDGVAFLGVLTACNHGGLV 475

Query: 466 KEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLS 525
            EG   F  M   + ++P  +HY CMVDILGRAG +E A +LI  MP+ PN  +W  LLS
Sbjct: 476 GEGRRLFRQMIDEYGIQPSEKHYACMVDILGRAGCLEEAHSLICSMPVAPNATVWGALLS 535

Query: 526 ACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKL 585
           ACR + N+ + E  A  L  ++ +NS +YVLL N++A  G W+D  +VR+M++E  ++K 
Sbjct: 536 ACRVHLNVQLAEAAATELFQIEPNNSGNYVLLFNIYADAGQWDDFSKVRAMIRENRVRKN 595

Query: 586 PGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
            G SWIEL  V+HEF + DKS      I++ML+
Sbjct: 596 RGSSWIELGSVIHEFVMGDKSHFDSERIFFMLE 628


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 243/616 (39%), Positives = 360/616 (58%), Gaps = 15/616 (2%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           +   TL L+ +C     + QIHA+M+ TG   +    ++L+ + + SP  P  ++A+ +F
Sbjct: 34  ANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSP-FPSLDYAQQVF 92

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV-DKFSASLVLKACSR 131
            +        + + WN +I+ Y+   +P ++L++F  ML       DKF+   ++KA S 
Sbjct: 93  DQI----PHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASE 148

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
           L  +  G   HG++ KV  GSD+F+ N LI  Y +CG L    ++F  +  RD VS+NSM
Sbjct: 149 LEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSM 208

Query: 192 IDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERD 249
           I  +V+ G  E A ELF  M  +  + N I+   VL+  A+ KS  +F   +   + ER+
Sbjct: 209 ITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAK-KSDFEFGRWVHSYI-ERN 266

Query: 250 LISW-----NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
            I       N+ML    KCG ++DA+ LFDKMP++D+VSW  M+ GYAK+G  D A+ +F
Sbjct: 267 RIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIF 326

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
           D MP +D+ A NA++  Y + G   +ALE+F  +Q      PD+ +LV  LSA AQLG +
Sbjct: 327 DAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAM 386

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
           D G  IH Y++K    LN     +LIDMY KCG ++ A+ VF  +E   V  W+AMI GL
Sbjct: 387 DLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGL 446

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
           A+HG G+ A  L  +M+   ++P+ +TFT +L AC+H GLV+EG   F  M  ++ + P 
Sbjct: 447 AMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPG 506

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
           ++HY CMVDILGRAG +E A  LIE MPM P   +W  LL AC  +EN+ + E     LI
Sbjct: 507 VKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLI 566

Query: 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
            ++  N  +YVLLSN++A  G W+    +R +M++  LKK PGCS IE++G+VHEF V D
Sbjct: 567 ELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGD 626

Query: 605 KSRLQVRDIYYMLDNM 620
            S    + IY  LD +
Sbjct: 627 NSHPSAKKIYAKLDEI 642


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 244/597 (40%), Positives = 377/597 (63%), Gaps = 20/597 (3%)

Query: 10  PCNSTQSTLLLLRKC---KTLNDVNQIHARMITTGF-IKNTHLTTKLVASFSSSPCTPLT 65
           P +ST  +LL  + C   K+L D   +HA MI T F  ++  L  KLV+ +       L 
Sbjct: 62  PHSSTYDSLL--QGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVK--LGSLV 117

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
           E AR +F +       K+   W A+I  Y+     +EAL  F  M D G+  + F+ + +
Sbjct: 118 E-ARRVFDEMPV----KNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASI 172

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           L AC+ L ++ E    H  + K  F S++F+ N L+ +Y + G +EFAR+LFDKM  RD 
Sbjct: 173 LPACTDLEVLGE---FHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDV 229

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM 245
           VS+N+MI GYV++G IE A +LF  +P  +R++I+WN+++ GYAQ    ++ A ++FEKM
Sbjct: 230 VSWNAMIAGYVQNGLIEDALKLFQEIP--KRDVITWNTMMAGYAQC-GDVENAVELFEKM 286

Query: 246 PERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFD 305
           PE++L+SWN+M+ G V+ G + +A  LF  MP+R+V+SW  +I G+A+ G+V+ A +LF 
Sbjct: 287 PEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFK 346

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
            MP+ +VV+ NAM+ GY +NG +  AL++F  MQ  + + P+  +  IVL A A L  ++
Sbjct: 347 TMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQM-VDMKPNTETFAIVLPACAALAVLE 405

Query: 366 KGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
           +G   H  + +  F  +   G  L+ MY+KCGSIE+A KVF+++        +AMI G A
Sbjct: 406 QGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYA 465

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL 485
           I+G  + + +L  +M+   ++PD +TF G+L+AC HAGLV EG   F++M R + + P +
Sbjct: 466 INGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAM 525

Query: 486 QHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIG 545
           +HYGCM+D+LGRAG  + A +LI  MP++P+  +W +LLSACR + N+++GE VA+HLI 
Sbjct: 526 EHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHNNIDLGEKVAQHLIA 585

Query: 546 MDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
           ++  N + YVLLSN++A  G W+D   VR+ MK+R +KK  GCSWI ++  VH F V
Sbjct: 586 LNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKVKKKLGCSWIVIKKQVHAFLV 642


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 243/613 (39%), Positives = 360/613 (58%), Gaps = 15/613 (2%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           L  + KC +   + ++HARM+ TG   +    +KL  + + S  + L ++AR +F +   
Sbjct: 29  LSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTL-DYARNLFDQI-- 85

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV-DKFSASLVLKACSRLGLIE 136
              + + + WN +I+ Y+   DP ++ V+F  +LD    + +KF+   V+KA S L    
Sbjct: 86  --PQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASR 143

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G  +HG+  K++FG DL++ N L+  Y  CG L  A +LF  +  +D VS+NSMI  + 
Sbjct: 144 VGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFA 203

Query: 197 KSGNIESARELFDSMPIRER---NLISWNSVLNGYAQLKSGLQFA-W---QIFEKMPERD 249
           +    E A ELF  M  RE    N ++   VL+  A+ K  L+F  W    I  K  + D
Sbjct: 204 QGNCPEDALELFLKME-RENVMPNSVTMVGVLSACAK-KLDLEFGRWVCSYIERKGIKVD 261

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
           L   N+ML    KCG +DDAQ LFD+MP+RDV SW  M+DGYAK+G  D AR +F+ MP 
Sbjct: 262 LTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPV 321

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           +++ A N ++  Y +NG   +AL IF+ +Q      PD+ +LV  LSA AQLG ID G  
Sbjct: 322 KEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGW 381

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
           IH Y++++   LN     +L+DMY+KCGS+E A++VF  +E+  V  W+AMI GL +HG 
Sbjct: 382 IHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGR 441

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
           G+ A DL  EM+   ++P+ +TFT +L AC+HAGLV EG + F  M  ++ + PE++HY 
Sbjct: 442 GKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYA 501

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549
           CMVDILGRAG +E A  LI +M   P+  +W  LL AC  + N+ +GE  +  L+ ++  
Sbjct: 502 CMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPR 561

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQ 609
           N  + VLLSN++A  G W     +R +M++  LKK PGCS IE  G VHEF V D +   
Sbjct: 562 NHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPL 621

Query: 610 VRDIYYMLDNMWT 622
             +IY  L+ + T
Sbjct: 622 SSNIYSKLEEIAT 634


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/619 (37%), Positives = 374/619 (60%), Gaps = 21/619 (3%)

Query: 16  STLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           S+L LL  CK+     QIHA+ I  G        ++L++ FS        + +R +F + 
Sbjct: 11  SSLCLLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQI 70

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV-DKFSASLVLKACSRLGL 134
               +  + F+WN +I+ YS   +P+EA+V++  M+  G++  + F+   +L +C+RL  
Sbjct: 71  ----DCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSS 126

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           +E G ++H  + K  F SDLF++N LI LY   G L  AR LFD+  +RD VSYN+MI G
Sbjct: 127 LEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKG 186

Query: 195 YVKSGNIESARELFDSMPIR-----ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERD 249
           Y +    ESA  LF  M        E   ++  SV +   +   G Q   Q+++ +   D
Sbjct: 187 YAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSID 246

Query: 250 --LISWNSMLHGCVKCGKMDDAQALFDKM-PKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
             ++  ++++    KCG ++ A+ +F  M   +   +W++M+ GYA+ G +++AR+LF+ 
Sbjct: 247 SNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNH 306

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           M +RDV++  AM+ GY + G   +ALE+F  M+  L + PD+ +LV VLSA A+LG  D 
Sbjct: 307 MHERDVISWTAMISGYSQAGQCSEALELFKEMEA-LGIKPDEVTLVAVLSACARLGAFDL 365

Query: 367 GVAI-HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI----EDGSVDHWNAMI 421
           G  + H+Y+E   F+ N     A++DMY+KCGSI++A+++F ++    + G V  +N+MI
Sbjct: 366 GKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFV--FNSMI 423

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
            GLA HGLGE A  +  E+    ++PD++TF G+L AC H+GL++EG   FE M   + +
Sbjct: 424 AGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGI 483

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
           +P+++HYGCMVD+LGR G +E A +L++ MP E N VIWR LLSACR + N+ +GE   +
Sbjct: 484 KPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQ 543

Query: 542 HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
            L+ M++ + + YVLLSN+ A    W +AR+VR +M++  ++K PG S+IEL G +H F 
Sbjct: 544 KLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFV 603

Query: 602 VRDKSRLQVRDIYYMLDNM 620
             DKS  Q ++I  ML +M
Sbjct: 604 ASDKSHPQGKEIELMLKDM 622


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/609 (38%), Positives = 363/609 (59%), Gaps = 45/609 (7%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L+ C T  + NQ+HA  I T  + +  ++++L+A ++      L        + +  F  
Sbjct: 22  LQNCGTEREANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQ-------YAHSLFDW 74

Query: 81  KKDPFL--WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
            ++P L  WN +IK Y       +A+ +FC +L + V  D F+   VLK C+RLG ++EG
Sbjct: 75  IQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFVP-DSFTLPCVLKGCARLGALQEG 133

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
            QIHGL+ K+ FG D F+ + L+S+Y +C                               
Sbjct: 134 KQIHGLVLKIGFGVDKFVLSSLVSMYSKC------------------------------- 162

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLH 258
           G IE  R++FD M   +++++SWNS+++GYA+    ++ A ++FE+MPE+D  SW  ++ 
Sbjct: 163 GEIELCRKVFDRM--EDKDVVSWNSLIDGYARCGE-IELALEMFEEMPEKDSFSWTILID 219

Query: 259 GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
           G  K GK++ A+ +FD+MP R+ VSW  MI+GY K G  + A+ LFD+MP+R +V  N+M
Sbjct: 220 GLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSM 279

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
           + GY RN    KAL++F+ M  E  + P+  +++  +SA + +  +  G  +H Y+ K  
Sbjct: 280 ITGYERNKQFTKALKLFEVMLRE-DISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSG 338

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
           F  +G  G  LI+MYSKCGS+++A++VF  I    + HW ++I GL +HGL E   +L  
Sbjct: 339 FKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFD 398

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
           EM R  ++P  ITF G+LNAC+HAG  ++    F++M   + ++P ++HYGC++D+L RA
Sbjct: 399 EMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRA 458

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           GH+E A++ IE MP++ N VIW +LLS  R + N+ +GE  A+HLI +    +  YV+LS
Sbjct: 459 GHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILS 518

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           NM+A  G+W   R+VR MMK++ +KK PGCS IE +G +HEF V DKS  Q  +IY  L 
Sbjct: 519 NMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKLC 578

Query: 619 NMWTPDSVA 627
            M    +VA
Sbjct: 579 EMKKKLNVA 587


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 242/684 (35%), Positives = 370/684 (54%), Gaps = 81/684 (11%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L  C  L   N+I ++MI TGFI +T   ++L+   + SP   L +++  IF +     E
Sbjct: 48  LHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGL-DYSLQIFDRI----E 102

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
             + F+WN +++ Y      ++AL+++ LM+ N V  D ++  LV++AC+   L   G +
Sbjct: 103 NSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKE 162

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           IH  + KV F SD+++QN LI++Y  CG +  AR+LFD+  + DSVS+NS++ GYVK G+
Sbjct: 163 IHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGD 222

Query: 201 IESARELFDSMPIR-----------------------------ERNLISWNSVLNGYAQ- 230
           +E A+ +FD MP R                             E++++SW+++++GY Q 
Sbjct: 223 VEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQN 282

Query: 231 -------------------------------------LKSGLQFAWQIFEKMPERDLISW 253
                                                +K+G      +     E  +   
Sbjct: 283 GMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQ 342

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
           N+++H     G++ DAQ LF+     D +SW +MI G  K G V+ AR LFD MP++D+V
Sbjct: 343 NALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIV 402

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
           + +A++ GY ++    + L +F  MQ    + PD+  LV V+SA   L  +D+G  +H Y
Sbjct: 403 SWSAVISGYAQHDCFSETLALFHEMQLG-QIRPDETILVSVISACTHLAALDQGKWVHAY 461

Query: 374 LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
           + K+   +N   G  L+DMY KCG +ENA++VF  +E+  V  WNA+I GLA++GL E +
Sbjct: 462 IRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERS 521

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493
            D+  EM+   + P++ITF G+L AC H GLV EG   F  M   H +EP ++HYGCMVD
Sbjct: 522 LDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVD 581

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS 553
           +LGRAG +  A  LIE MPM P+   W  LL AC+ + +  +GE V + LI +   +   
Sbjct: 582 LLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGF 641

Query: 554 YVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
           +VLLSN+FA  G W D   VR MMK++ + K PGCS IE  GVVHEF   DK+   +  +
Sbjct: 642 HVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKV 701

Query: 614 YYMLDNM--------WTPDSVATS 629
             ML+ M        + PD+   S
Sbjct: 702 EGMLNEMAKRLKMEGYAPDTNEVS 725


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/623 (37%), Positives = 367/623 (58%), Gaps = 17/623 (2%)

Query: 10  PCNSTQSTL---LLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTE 66
           P ++T + +    L ++C +   + QIHA+M+ T  + + +  ++L  + + S  + L +
Sbjct: 132 PASATATNVGDRALFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSAL-D 190

Query: 67  FARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLML-DNGVSVDKFSASLV 125
           +AR +F +      + + + WN +I+  +   DP +++++F  ML D+    +KF+  ++
Sbjct: 191 YARKVFDQI----PQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVL 246

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM--GIR 183
           +KA +       G  +HG+  K +FG D+F+ N LI  Y  CG+L+ A  +F+ +    +
Sbjct: 247 IKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNK 306

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQ---LKSGLQFA 238
           D VS+NSM+ G+V+ G  + A +LF+ M       N ++  SV++  A+   L  G +  
Sbjct: 307 DIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVC 366

Query: 239 WQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVD 298
             I       +L   N+ +   VKCG+++ A+ LFD M KRDVVSW  +IDGYAK+    
Sbjct: 367 DYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHG 426

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQ-CELYLHPDDASLVIVLSA 357
           IAR +FD MP++D+ A N ++ GY ++G   +AL IF  +Q  +    PD  +L+  LSA
Sbjct: 427 IARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSA 486

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
            AQLG +D G  IH Y++K++  LN     +LIDMYSK G +E AI+VF  I +  V  W
Sbjct: 487 CAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVW 546

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
           +AMI GLA+HG GE A +L ++M+   ++P+ +TFT LL AC+H+GLV EG   F+ M R
Sbjct: 547 SAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMER 606

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
           ++ + P+ +HY CMVD+LGRAGH+E A   IE MP+ P+  +W  LL AC  + NL + E
Sbjct: 607 VYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAE 666

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVV 597
                L+ ++  N  +YVLLSN++A  G W     +R  M++  LKK  GCS IE++G V
Sbjct: 667 KACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTV 726

Query: 598 HEFFVRDKSRLQVRDIYYMLDNM 620
           HEF V D +    RDIY  LD +
Sbjct: 727 HEFIVGDNAHPLSRDIYAKLDEI 749


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/607 (37%), Positives = 360/607 (59%), Gaps = 24/607 (3%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           L LLR   +L  ++QIHA+ +  G    THL  KL+   S        ++AR++  +   
Sbjct: 3   LSLLRTATSLTQIHQIHAQTLIHGLPLQTHLIPKLIDLHS-------IDYARFVLDQ--- 52

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
                  F WN++I+ Y+    P+ +L ++  ML +      F+   VLKACS LG + E
Sbjct: 53  -TPSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLE 111

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G QIH  + ++ FGSDLF+ N LI +Y +C  L+ AR  +D MG RD VS+NS+I GYV+
Sbjct: 112 GEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQ 171

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
            G +E AR+LF+ MP+R RN++ W +++NGY +    ++      + +   D +  N+  
Sbjct: 172 WGQVEKARDLFEEMPMR-RNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAAT 230

Query: 258 HGCV----------KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
             C+          + G+        +K+P   ++  A +ID Y+K G V+ A R+FD +
Sbjct: 231 MVCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTA-LIDMYSKCGDVEKAWRIFDGV 289

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
             +++ + NA++ G V+ G   +A++++ +M+ +  + P++ +LV VLSA A LG ++ G
Sbjct: 290 SCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQ-SVKPNEITLVNVLSACAGLGALELG 348

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
             +H YL ++   LN     AL+DMY+KCG I++A  +F +  +  V  WNAMI GLA H
Sbjct: 349 REVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYH 408

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           G G  +  +  +M R  ++P+D+TF G+L+AC H+GLV+EG + F  M   H L P+L+H
Sbjct: 409 GDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEH 468

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
           Y CMVD+LGRAGH++ A  L+++M + P+ +IW  LLSACR + NL + + +++ ++   
Sbjct: 469 YACMVDLLGRAGHLKEAYELVQNMLIPPDSIIWGALLSACRIHRNLELADKISETIMASQ 528

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
             N    +LLSN++A  G W D  RVR  +KE+ +KK  GCSW+E++GVVH F V D + 
Sbjct: 529 DPNIGFCILLSNIYASSGRWKDVARVRRQVKEKRIKKPSGCSWVEVDGVVHRFVVEDTTH 588

Query: 608 LQVRDIY 614
           L+  +IY
Sbjct: 589 LKSGEIY 595


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/630 (36%), Positives = 362/630 (57%), Gaps = 21/630 (3%)

Query: 10  PCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFAR 69
           P       L L++ CK++  + QIH++ I TG I N  +  +++A F         E+AR
Sbjct: 15  PSLPQTPPLSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIA-FCCKHELGDMEYAR 73

Query: 70  YIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKAC 129
            +F          + F+WN +IK YS    P  A+ M+C ML+ GV  D+++   +LK  
Sbjct: 74  MVFDTMPG----PNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRF 129

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
           +R   ++ G ++H  + K+ F S++F+QN LI LY   G +  AR +FD+    D V++N
Sbjct: 130 TRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWN 189

Query: 190 SMIDGYVKSGNIESARELFDSMPIRERNL---ISWNSVLNGYAQLKS---GLQFAWQIFE 243
            MI GY +S   + + +LFD M  R R L   I+  SVL+  ++LK    G +    + +
Sbjct: 190 VMISGYNRSKQFDESMKLFDEME-RMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKD 248

Query: 244 KMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRL 303
              E   +  N+++     CG MD A  +FD M  RDV+SW  ++ G+  LG+V +AR  
Sbjct: 249 LKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNY 308

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           FD+MP+RD V+  AM+ GY++     + L +F  MQ    + PD+ ++V +L+A A LG 
Sbjct: 309 FDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAA-NIKPDEFTMVSILTACAHLGA 367

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           ++ G  I  Y++K++  ++   G ALIDMY  CG++E AI++F  +       W A+I G
Sbjct: 368 LELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFG 427

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
           LAI+G GE A D+  +M + SI PD++T  G+L AC H+G+V +G   F  M   H +EP
Sbjct: 428 LAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEP 487

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
            + HYGCMVD+LGRAGH++ A  +I++MP++PN ++W +LL ACR + +  + E  A+ +
Sbjct: 488 NVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQI 547

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVR 603
           + ++  N + YVLL N++A    W     VR +M +R +KK PGCS IE+ G VHEF   
Sbjct: 548 LELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAG 607

Query: 604 DKSRLQVRDIYYMLDNM--------WTPDS 625
           D+   Q ++IY  LD M        ++PD+
Sbjct: 608 DQVHPQSKEIYSKLDEMSVDLKFAGYSPDT 637


>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
 gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/598 (38%), Positives = 362/598 (60%), Gaps = 44/598 (7%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           L LL+K KT + + QIHA++ITT  I +T   ++L+ S  S   T    +A  +F + H 
Sbjct: 15  LSLLQKSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVSK--TLNVNYAELVFAQIH- 71

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL-GLIE 136
              + + F+ N ++K Y+    P+ AL  +  M   G+  D ++   VLKAC  + GL+E
Sbjct: 72  ---QPNSFICNTMVKCYTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLE 128

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            GL + G   K  FG D+F+ N LIS+Y RCG   +A                       
Sbjct: 129 GGL-VQGEAVKRGFGGDVFVVNGLISMYCRCGETGWA----------------------- 164

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
                   R +FD     E++L+SWNS+L GY      ++ A  +F++MPERD++SW+ M
Sbjct: 165 --------RAVFDGFS--EKDLVSWNSMLGGYVWCGE-MENAQNMFDEMPERDVVSWSIM 213

Query: 257 LHG-CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           + G   K G+++ A+  FD MP RD+VSW +MIDGYAK+G +++AR +FD+M +++V++ 
Sbjct: 214 IDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQKNVISW 273

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           + M+ GY ++  S +AL +F  M C+  + PD  S+V  +SA +QLG +D+G  IH Y++
Sbjct: 274 SIMIDGYAQHRDSKEALNLFRQMLCQ-GIKPDRVSVVGAVSACSQLGALDQGRWIHLYMK 332

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           +++  L+     AL+DMY KCGS + A ++F  + + +V  WN MI GL ++G G+ A +
Sbjct: 333 RNRMLLDIVVQTALVDMYLKCGSRDEARRIFNSMPERNVVSWNVMIVGLGMNGFGKEALE 392

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
              +ME   I  DD+ F G+L AC+HA LV EGL  F  M+ +++LEP+L+HYGC+VD+L
Sbjct: 393 CFTQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLL 452

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           GRAG ++  +N+I+ MPM+PN  +W +LL ACR ++N+ + E V + L  + + +S  YV
Sbjct: 453 GRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLAEIVVERLAELKADDSGVYV 512

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
           L+SN++A +GMW    R+R +MKER +KK  G S IE++G V EF   +KS +   +I
Sbjct: 513 LMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRSVIEVDGNVEEFVSGEKSHILREEI 570


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/611 (38%), Positives = 363/611 (59%), Gaps = 50/611 (8%)

Query: 19  LLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAF 78
           L+L +CKT+ D+N+IHA +I T  +    +   L+ S +    T + ++A  IF +    
Sbjct: 29  LILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSM-DYAVSIFRQI--- 84

Query: 79  REKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
            ++ D   +N +I+ ++    P EA+++F  M +N V  D+F+   +LK CSRL  + EG
Sbjct: 85  -DEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEG 143

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
            QIH L+ K  FGS  F++N LI +Y  CG                              
Sbjct: 144 EQIHALIMKCGFGSHGFVKNTLIHMYANCG------------------------------ 173

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDL-ISWNSM 256
             +E AR +FD M   ERN+ +WNS+  GY   KSG  +   ++F +M E D+     ++
Sbjct: 174 -EVEVARRVFDEM--SERNVRTWNSMFAGYT--KSGNWEEVVKLFHEMLELDIRFDEVTL 228

Query: 257 LHGCVKCGKMDDAQA-------LFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
           +     CG++ D +        + +K  K +     +++D YAK G+VD ARRLFD+M +
Sbjct: 229 VSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDR 288

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           RDVVA +AM+ GY +     +AL++F  MQ +  + P++ ++V +LS+ A LG ++ G  
Sbjct: 289 RDVVAWSAMISGYSQASRCREALDLFHEMQ-KANIDPNEITMVSILSSCAVLGALETGKW 347

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
           +H +++K +  L    G AL+D Y+KCGS+E++I+VF ++   +V  W  +I GLA +G 
Sbjct: 348 VHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQ 407

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
           G+ A +    M   ++EP+D+TF G+L+AC+HAGLV EG   F  M R   +EP ++HYG
Sbjct: 408 GKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYG 467

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549
           CMVDILGRAG IE A   I++MP++PN VIWRTLL++C+ ++N+ +GE   K LI ++ +
Sbjct: 468 CMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPT 527

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQ 609
           +S  Y+LLSN++A +G W DA +VR  MKE+ +KK PGCS IEL+GV+HEFF  D    Q
Sbjct: 528 HSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQ 587

Query: 610 VRDIYYMLDNM 620
             +IY  +++M
Sbjct: 588 SEEIYNAIEDM 598



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 112/452 (24%), Positives = 213/452 (47%), Gaps = 53/452 (11%)

Query: 6   NYNQPCNSTQSTLL-LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPL 64
           N  QP   T   +L +  + + L++  QIHA ++  GF  +  +   L+  +++  C  +
Sbjct: 118 NSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYAN--CGEV 175

Query: 65  TEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL 124
            E AR +F +      +++   WN++   Y+   + +E + +F  ML+  +  D+ +   
Sbjct: 176 -EVARRVFDEM----SERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVS 230

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           VL AC RL  +E G  I+  + +     +  L   L+ +Y +CG ++ AR+LFD+M  RD
Sbjct: 231 VLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRD 290

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYA---QLKSGLQFAW 239
            V++++MI GY ++     A +LF  M     + N I+  S+L+  A    L++G    +
Sbjct: 291 VVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHF 350

Query: 240 QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDI 299
            I +K  +  +    +++    KCG ++ +  +F KMP ++V+SW  +I G A       
Sbjct: 351 FIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLAS------ 404

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
                                    NG   KALE F  +  E  + P+D + + VLSA +
Sbjct: 405 -------------------------NGQGKKALEYF-YLMLEKNVEPNDVTFIGVLSACS 438

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGK--HGVALIDMYSKCGSIENAIKVFEQ--IEDGSVD 415
             G +D+G  +   + +D F +  +  H   ++D+  + G IE A +  +   I+  +V 
Sbjct: 439 HAGLVDEGRDLFVSMSRD-FGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVI 497

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEP 447
            W  ++    +H   E+  + L ++  + +EP
Sbjct: 498 -WRTLLASCKVHKNVEIGEESLKQL--IILEP 526


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 239/635 (37%), Positives = 360/635 (56%), Gaps = 49/635 (7%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLT-TKLVASFSSSPCTPLTEFARYIFFKYH 76
           L ++  CKTL  +  IHAR++    + ++     KL+  +S    T          + + 
Sbjct: 6   LHIIHNCKTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATD---------YAHK 56

Query: 77  AFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
            F E   P  +LW ++I  Y       EA  +F  M    +SV  F+ S VLKA +RL  
Sbjct: 57  VFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTR 116

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRC--------------------------G 168
            + G  ++G + K  F  DL +QN ++ L++RC                          G
Sbjct: 117 FKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISG 176

Query: 169 Y-----LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNS 223
           Y     ++ AR+ FD+M  R+ VS+ SMI GYVK+G++  A+ LFDSMP+++  L SWN 
Sbjct: 177 YGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKD--LASWNV 234

Query: 224 VLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS 283
           +++GY  +   +  A  IF KMP  D  SWN M+ G  K G+++ A+  FD+MP ++V+S
Sbjct: 235 MVSGYMDIGDCVN-ARIIFGKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVIS 293

Query: 284 WANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELY 343
           W  M+DGY K G  + AR LFD+MP +++V  + M+GGY RNG  +KALE+F+  + E  
Sbjct: 294 WGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFK-EQD 352

Query: 344 LHPDDASLVIVLSAIAQLGHIDKGVAI-HRYLEKDQFSLNGKHGVALIDMYSKCGSIENA 402
           + PD+  ++ ++SA +QLG ID   +I H Y+     S + +   +LIDMY+KCGSIE A
Sbjct: 353 IKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLS-DLRVFTSLIDMYAKCGSIEKA 411

Query: 403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
           +++FE      +  ++ MI  LA HGLG  A  L  +M+R +I+PD +TF G+L AC H 
Sbjct: 412 LQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHG 471

Query: 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRT 522
           GLV EG   F+ M     ++P  +HY C+VD+LGR G +E A NLI +MP+ P+ V+W  
Sbjct: 472 GLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGA 531

Query: 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
           LL+ACR + N+ + E  A  L  ++  NS +Y+LLSN++A  G W    +VR+ ++E  +
Sbjct: 532 LLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRV 591

Query: 583 KKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           +K  G SWIEL  VVHEF + D S      I  +L
Sbjct: 592 RKNRGSSWIELSHVVHEFVMGDMSHTDSDSISLIL 626


>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
          Length = 585

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/598 (38%), Positives = 361/598 (60%), Gaps = 44/598 (7%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           L LL+  KT + + QIHA++ITT  I +T   ++L+ S  S   T    +A  +F + H 
Sbjct: 15  LSLLQXSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVSK--TLNVNYAELVFAQIH- 71

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL-GLIE 136
              + + F+ N ++K Y+    P+ AL  +  M   G+  D ++   VLKAC  + GL+E
Sbjct: 72  ---QPNSFICNTMVKCYTESSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLE 128

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            GL + G   K  FG D+F+ N LIS+Y RCG   +AR               ++ DG+ 
Sbjct: 129 GGL-VQGEAVKRGFGGDVFVVNGLISMYCRCGETGWAR---------------AVFDGF- 171

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
                             E++L+SWNS+L GY      ++ A  +F++MPERD++SW+ M
Sbjct: 172 -----------------SEKDLVSWNSMLGGYVWCGE-MENAQNMFDEMPERDVVSWSIM 213

Query: 257 LHG-CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           + G   K G+++ A+  FD MP RD+VSW +MIDGYAK+G +++AR +FB+M +++V++ 
Sbjct: 214 IDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQKNVISW 273

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           + M+ GY  +  S +AL +F  M C+  + PD  S+V  +SA +QLG +D+G  IH Y++
Sbjct: 274 SIMIDGYAXHRDSKEALNLFRQMLCQ-GIKPDRVSVVGAVSACSQLGALDQGRWIHLYMK 332

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           +++  L+     AL+DMY KCGS + A  +F  + + +V  WN MI GL ++G G+ A +
Sbjct: 333 RNRMLLDIVVQTALVDMYLKCGSXDEARXIFNSMPERNVVSWNVMIVGLGMNGFGKEALE 392

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
              +ME   I  DD+ F G+L AC+HA LV EGL  F  M+ +++LEP+L+HYGC+VD+L
Sbjct: 393 CFXQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLL 452

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           GRAG ++  +N+I+ MPM+PN  +W +LL ACR ++N+ + E V + L  + + +S  YV
Sbjct: 453 GRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLAEIVVERLAELKADDSGVYV 512

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
           L+SN++A +GMW    R+R +MKER +KK  G S IE++G V EF   +KS +   +I
Sbjct: 513 LMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRSVIEVDGNVEEFVSGEKSHILREEI 570


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/644 (36%), Positives = 358/644 (55%), Gaps = 80/644 (12%)

Query: 17  TLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L LL  CK+  ++ QIH+++I TG        +KL+   + SP   L+    Y    + 
Sbjct: 35  SLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLS----YALLLFE 90

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
           +  E+ + F+WN +I+  S    P  A+  +  ML  GV  + ++   +LK+C+++G  +
Sbjct: 91  SI-EQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQ 149

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           EG QIHG + K+   SD F+   LI++Y + G L +A  +F K  +RD+VS+ ++I GY 
Sbjct: 150 EGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYT 209

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
                                             L+  L  A ++FE++P RD +SWN+M
Sbjct: 210 ----------------------------------LRGCLDDARRLFEEIPVRDAVSWNAM 235

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVV--------------------------SWAN---- 286
           + G  + G+ ++A A F +M + +V                           SW      
Sbjct: 236 IAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGL 295

Query: 287 ---------MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
                    +ID Y+K G +D AR LF+ + ++D+++ N M+GGY       +AL +F  
Sbjct: 296 GSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRK 355

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL-NGKHGVALIDMYSKC 396
           MQ +  + P+D + V +L A A LG +D G  IH Y++K    L N     +LIDMY+KC
Sbjct: 356 MQ-QSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKC 414

Query: 397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLL 456
           G+IE A +VF  ++  S+  WNAMI+GLA+HG   +A +L  +M     EPDDITF G+L
Sbjct: 415 GNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVL 474

Query: 457 NACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPN 516
           +AC+HAGLV+ G  CF  M   + + P+LQHYGCM+D+LGRAG  + A  L+++M M+P+
Sbjct: 475 SACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPD 534

Query: 517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSM 576
             IW +LL ACR + N+ +GE  AKHL  ++  N  +YVLLSN++A  G W+D  R+R+ 
Sbjct: 535 GAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTK 594

Query: 577 MKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           + ++ +KK+PGCS IE++ VVHEF V DK   Q +DIY MLD +
Sbjct: 595 LNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEI 638


>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
 gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial; Flags: Precursor
 gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
 gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
 gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
 gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
          Length = 681

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 239/619 (38%), Positives = 354/619 (57%), Gaps = 24/619 (3%)

Query: 12  NSTQSTLL------LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLT 65
           NST S +L      LL KCK L  + QI A+MI  G I +   +++L+A  + S      
Sbjct: 45  NSTHSFVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSE----- 99

Query: 66  EFARYIFFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGV---SVDKF 120
             +RY+ +     +  ++P  F WN  I+ +S   +PKE+ +++  ML +G      D F
Sbjct: 100 --SRYLDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHF 157

Query: 121 SASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
           +  ++ K C+ L L   G  I G + K+       + N  I ++  CG +E AR++FD+ 
Sbjct: 158 TYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDES 217

Query: 181 GIRDSVSYNSMIDGYVKSGNIESA---RELFDSMPIR--ERNLISWNSVLNGYAQLKSGL 235
            +RD VS+N +I+GY K G  E A    +L +S  ++  +  +I   S  +    L  G 
Sbjct: 218 PVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGK 277

Query: 236 QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG 295
           +F   + E      +   N+++    KCG + +A+ +FD + KR +VSW  MI GYA+ G
Sbjct: 278 EFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCG 337

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
            +D++R+LFD+M ++DVV  NAM+GG V+      AL +F  MQ      PD+ +++  L
Sbjct: 338 LLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTS-NTKPDEITMIHCL 396

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
           SA +QLG +D G+ IHRY+EK   SLN   G +L+DMY+KCG+I  A+ VF  I+  +  
Sbjct: 397 SACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSL 456

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            + A+I GLA+HG    A     EM    I PD+ITF GLL+AC H G+++ G   F  M
Sbjct: 457 TYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQM 516

Query: 476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNV 535
           +    L P+L+HY  MVD+LGRAG +E A  L+E MPME +  +W  LL  CR + N+ +
Sbjct: 517 KSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVEL 576

Query: 536 GEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG 595
           GE  AK L+ +D S+S  YVLL  M+    MW DA+R R MM ER ++K+PGCS IE+ G
Sbjct: 577 GEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNG 636

Query: 596 VVHEFFVRDKSRLQVRDIY 614
           +V EF VRDKSR +   IY
Sbjct: 637 IVCEFIVRDKSRPESEKIY 655


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 238/626 (38%), Positives = 366/626 (58%), Gaps = 18/626 (2%)

Query: 5   ANYNQPCNSTQSTLLL--LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCT 62
            N+N      QS  LL  L  C ++  + +IHA+MI+TG I +    ++LVA  + S   
Sbjct: 43  TNWNASHVLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWR 102

Query: 63  PLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV-DKFS 121
            L ++   I           + F WN  I+ Y    +P  A++++  ML  G ++ D ++
Sbjct: 103 NL-DYCDKILNN----AANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYT 157

Query: 122 ASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
             L+ K C+   L     +I G + ++ F SDLF+ N +I + V CG L  AR+LFD+  
Sbjct: 158 YPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESC 217

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNL----ISWNSVLNGYAQLKS---G 234
           +RD VS+NS+I+GYV+ G  + A +L+  M   E N+    ++   V++  AQL++   G
Sbjct: 218 VRDLVSWNSIINGYVRCGLADEAFDLYYKM--GELNVMPDEVTMIGVVSASAQLENLALG 275

Query: 235 LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKL 294
            +    I E      +   N+++   +KC  ++ A+ LF+ M K+ VVSW  M+ GYAK 
Sbjct: 276 RKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKF 335

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
           G ++ A RLF+EMP++DVV  NA++GG+V+   S +AL +F  MQ    + PD  ++V  
Sbjct: 336 GLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQAS-SVAPDKITVVNC 394

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
           LSA +QLG +D G+ +H Y++K   ++N   G AL+DMY+KCG+I+ AI+VFE++   + 
Sbjct: 395 LSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNS 454

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
             W A+I GLA+HG    A     EM  + + PD+ITF G+L+AC H GLV +G   F  
Sbjct: 455 LTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQ 514

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534
           M   + + P+L+HY C+VD+LGRAG +E A  LI  MP EP+ V+W  L    R + N++
Sbjct: 515 MTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVH 574

Query: 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           +GE  A  L+ +D  +   YVLL+NM+    MW  AR+VR MM+ER ++K PGCS IE+ 
Sbjct: 575 MGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMN 634

Query: 595 GVVHEFFVRDKSRLQVRDIYYMLDNM 620
           G+V++F +RDKS  Q   IY  L  +
Sbjct: 635 GLVYDFIIRDKSHPQSEKIYECLTRL 660


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 238/626 (38%), Positives = 366/626 (58%), Gaps = 18/626 (2%)

Query: 5   ANYNQPCNSTQSTLLL--LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCT 62
            N+N      QS  LL  L  C ++  + +IHA+MI+TG I +    ++LVA  + S   
Sbjct: 43  TNWNASHVLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWR 102

Query: 63  PLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV-DKFS 121
            L ++   I           + F WN  I+ Y    +P  A++++  ML  G ++ D ++
Sbjct: 103 NL-DYCDKILNN----AANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYT 157

Query: 122 ASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
             L+ K C+   L     +I G + ++ F SDLF+ N +I + V CG L  AR+LFD+  
Sbjct: 158 YPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESC 217

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNL----ISWNSVLNGYAQLKS---G 234
           +RD VS+NS+I+GYV+ G  + A +L+  M   E N+    ++   V++  AQL++   G
Sbjct: 218 VRDLVSWNSIINGYVRCGLADEAFDLYYKM--GELNVMPDEVTMIGVVSASAQLENLALG 275

Query: 235 LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKL 294
            +    I E      +   N+++   +KC  ++ A+ LF+ M K+ VVSW  M+ GYAK 
Sbjct: 276 RKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKF 335

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
           G ++ A RLF+EMP++DVV  NA++GG+V+   S +AL +F  MQ    + PD  ++V  
Sbjct: 336 GLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQAS-SVAPDKITVVNC 394

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
           LSA +QLG +D G+ +H Y++K   ++N   G AL+DMY+KCG+I+ AI+VFE++   + 
Sbjct: 395 LSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNS 454

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
             W A+I GLA+HG    A     EM  + + PD+ITF G+L+AC H GLV +G   F  
Sbjct: 455 LTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQ 514

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534
           M   + + P+L+HY C+VD+LGRAG +E A  LI  MP EP+ V+W  L    R + N++
Sbjct: 515 MTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVH 574

Query: 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           +GE  A  L+ +D  +   YVLL+NM+    MW  AR+VR MM+ER ++K PGCS IE+ 
Sbjct: 575 MGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMN 634

Query: 595 GVVHEFFVRDKSRLQVRDIYYMLDNM 620
           G+V++F +RDKS  Q   IY  L  +
Sbjct: 635 GLVYDFIIRDKSHPQSEKIYECLTRL 660


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/587 (39%), Positives = 346/587 (58%), Gaps = 27/587 (4%)

Query: 37  MITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSH 96
           M+ TG I++   +++L+A  + S    L ++   I F         + F WN  I+ +  
Sbjct: 1   MVLTGLIEDGFASSRLIAFCAISEWRDL-DYCTNILFN----TRNPNTFSWNVAIRGFLD 55

Query: 97  GLDPKEALVMFCLMLD-NGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLF 155
             +P+EA+V++  +L  +G   D ++  L+ KAC+RL LI  G +I G +  + F SD+F
Sbjct: 56  SENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIF 115

Query: 156 LQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR- 214
           + N +I L V CG L+ AR++FDK  +RD VS+NSMI+GYV+ G    A   +  M +  
Sbjct: 116 VSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEG 175

Query: 215 -ERNLISWNSVLNGYAQLKS---GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQ 270
            + + ++   V++  AQL+    G +    I E   +  +   N+++   +KCG ++ A+
Sbjct: 176 IKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESAR 235

Query: 271 ALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMK 330
            LFD M  + +VSW  M               LFDEMP +DVV  NAM+GGYV      +
Sbjct: 236 KLFDSMTNKTMVSWTTM---------------LFDEMPDKDVVPWNAMIGGYVHANRGKE 280

Query: 331 ALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI 390
           AL +F+ MQ  + ++PD+ ++V  LSA +QLG +D G+ IH Y+EK + SLN   G ALI
Sbjct: 281 ALALFNEMQA-MNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALI 339

Query: 391 DMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
           DMY+KCG I  AI+VF+++   +   W A+I+GLA+HG    A     EM   S+ PD++
Sbjct: 340 DMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEV 399

Query: 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIED 510
           TF GLL+AC H GLV+EG   F  M     L P+L+HY CMVD+LGRAG +E A  LI+ 
Sbjct: 400 TFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKS 459

Query: 511 MPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDA 570
           MP+E + V+W  L  ACR + N+ +GE  A  L+ MD  +S  YVLL+NM+    MW +A
Sbjct: 460 MPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEA 519

Query: 571 RRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
            + R +M++R ++K PGCS IE+ G+V+EF VRDKS  Q   IY  L
Sbjct: 520 GKXRKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECL 566


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/627 (36%), Positives = 367/627 (58%), Gaps = 25/627 (3%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
           +S + LL KCK++  + QIH+  I  G + +  L  K V +F  +  +    +AR +F  
Sbjct: 8   ESPISLLEKCKSMYQLKQIHSHTIKMG-LSSDPLFQKRVIAFCCAHESGKMIYARQVFDA 66

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
                 +   F+WN +IK YS    P+  + M+ LML + +  D+F+   +LK  +R   
Sbjct: 67  I----PQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMA 122

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           ++ G  +     K  F S+LF+Q   I ++  C  ++ AR++FD     + V++N M+ G
Sbjct: 123 LQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSG 182

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSV-----LNGYAQLK---SGLQFAWQIFEKMP 246
           Y +    + ++ LF  M   E+  +S NSV     L+  ++LK    G      I   + 
Sbjct: 183 YNRVKQFKKSKMLFIEM---EKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIV 239

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
           ER+LI  N ++     CG+MD+AQ++FD M  RDV+SW +++ G+A +G++D+AR+ FD+
Sbjct: 240 ERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQ 299

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           +P+RD V+  AM+ GY+R    ++AL +F  MQ    + PD+ ++V +L+A A LG ++ 
Sbjct: 300 IPERDYVSWTAMIDGYLRMNRFIEALALFREMQMS-NVKPDEFTMVSILTACAHLGALEL 358

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G  +  Y++K+    +   G ALIDMY KCG++  A KVF+++       W AMI GLAI
Sbjct: 359 GEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAI 418

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           +G GE A  +   M   SI PD+IT+ G+L AC HAG+V++G   F  M   H ++P + 
Sbjct: 419 NGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVT 478

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HYGCMVD+LGRAG +E A  +I +MP++PN ++W +LL ACR ++N+ + E  AK ++ +
Sbjct: 479 HYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILEL 538

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           +  N + YVLL N++A    W + R+VR +M ER +KK PGCS +EL G V+EF   D+S
Sbjct: 539 EPENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQS 598

Query: 607 RLQVRDIYYMLDNM--------WTPDS 625
             Q ++IY  L+NM        ++PD+
Sbjct: 599 HPQSKEIYAKLENMMQDLIKAGYSPDT 625


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/618 (37%), Positives = 359/618 (58%), Gaps = 15/618 (2%)

Query: 12  NSTQSTLLL--LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFAR 69
           N  +ST +L  + +C     + QIHA M+ T    + +  +KL+ +++ S C+ L  +A+
Sbjct: 68  NEVESTNILEFIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLI-YAK 126

Query: 70  YIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV-DKFSASLVLKA 128
            +F +      + + + WN +I+ Y+   DP ++ ++F  ML +     +KF+   + KA
Sbjct: 127 NVFNQI----PQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKA 182

Query: 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY 188
            SRL ++  G  +HG++ K +  SDLF+ N LI+ Y   G  + A ++F  M  +D VS+
Sbjct: 183 ASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSW 242

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQLKSGLQFAWQIFEKMP 246
           N+MI+ +   G  + A  LF  M +++   N+I+  SVL+  A+ K  L+F   I   + 
Sbjct: 243 NAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAK-KIDLEFGRWICSYIE 301

Query: 247 E----RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
                  LI  N+ML   VKCG ++DA+ LF+KM ++D+VSW  M+DG+AKLG  D A  
Sbjct: 302 NNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHC 361

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           +FD MP +   A NA++  Y +NG    AL +F  MQ      PD+ +L+  L A AQLG
Sbjct: 362 IFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLG 421

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
            ID G  IH Y++K   +LN     +L+DMY+KCG++  A++VF  +E   V  W+AMI 
Sbjct: 422 AIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIG 481

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
            LA++G G+ A DL   M    I+P+ +TFT +L AC HAGLV EG   FE M  ++ + 
Sbjct: 482 ALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIV 541

Query: 483 PELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKH 542
           P++QHY C+VDI GRAG +E A + IE MP+ P   +W  LL AC  + N+ + E   ++
Sbjct: 542 PQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQN 601

Query: 543 LIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
           L+ ++  N  ++VLLSN++A  G W     +R +M++ ++KK P CS I++ G+VHEF V
Sbjct: 602 LLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLV 661

Query: 603 RDKSRLQVRDIYYMLDNM 620
            D S    + IY  LD +
Sbjct: 662 GDNSHPFSQKIYSKLDEI 679


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/620 (35%), Positives = 367/620 (59%), Gaps = 16/620 (2%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           + +S + LL+ CK++  + QI  +++ TGF ++     K +    + P      +A  IF
Sbjct: 31  TKKSCIFLLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVC-CTDPSIGNLHYAERIF 89

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL 132
                + +    F++N +IK ++     ++A+++F  + + G+S D F+   V KA   L
Sbjct: 90  ----NYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCL 145

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
           G + EG +++G + K     D ++ N L+ +Y   G ++  RQ+F++M  RD VS+N +I
Sbjct: 146 GEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLI 205

Query: 193 DGYVKSGNIESARELF------DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP 246
            GYVK    E A ++F       S+   E  ++S  S       L+ G +    + E++ 
Sbjct: 206 SGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQLG 265

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
               I  N+++    KCG +  A+ +F+ MP + V+ W +M+ GY   G++D AR LF+ 
Sbjct: 266 FTIKIG-NALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFER 324

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
            P RDVV   AM+ GYV+      A+ +F  MQ +  + PD  +LV +L+  AQLG +++
Sbjct: 325 SPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIK-RVSPDRFTLVALLTGCAQLGTLEQ 383

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G  IH Y+++++  ++   G ALI+MY+KCG IE ++++F  +++     W ++I GLA+
Sbjct: 384 GKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAM 443

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           +G    A +L  EM +  ++PDDITF G+L+AC+H GLV+EG   F  M  ++++EP+L+
Sbjct: 444 NGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLE 503

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI---WRTLLSACRNYENLNVGEPVAKHL 543
           HYGC++D+LGRAG ++ A  LIE  P   N+VI   +  LLSACR + N+ +GE VAK L
Sbjct: 504 HYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRL 563

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVR 603
           +G++S +SS + LL+N++A    W D  +VR  MK+  +KK+PGCS +E+ G+VHEF V 
Sbjct: 564 VGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFLVG 623

Query: 604 DKSRLQVRDIYYMLDNMWTP 623
           D S  ++R+IY MLD++  P
Sbjct: 624 DASHPEMREIYSMLDSIAKP 643


>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/602 (37%), Positives = 344/602 (57%), Gaps = 44/602 (7%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L +C +LN V QIHA+++     + + +  KL+A+FS           R +    + F +
Sbjct: 24  LHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFS---------LCRQMTLAVNVFNQ 74

Query: 81  KKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
            +DP   L+N +I+ +    +P  A  +F  M D+GV  D F+   +LKACS    +   
Sbjct: 75  IQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVV 134

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
             IH  + K+ F  D+F+ N LI  Y +CG                       +DG    
Sbjct: 135 EMIHAQVEKMGFCLDIFVPNSLIDSYFKCG-----------------------LDG---- 167

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLH 258
             + +AR++F+ M   ER+ +SWNS++ G  ++   L  A ++F++MPERD +SWN++L 
Sbjct: 168 --VAAARKVFEVMA--ERDTVSWNSMIGGLVKVGE-LGEARRLFDEMPERDTVSWNTILD 222

Query: 259 GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
           G VK G+M+ A  LF+KMP R+VVSW+ M+ GY+K G +D+AR LFD+MP +++V    M
Sbjct: 223 GYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIM 282

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
           + GY   G +  A+ +++ M+ E  L  DD +++ +LSA A  G +  G  +H  +E+ +
Sbjct: 283 ISGYAEKGLAKDAINLYNQME-EAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTR 341

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
           F  +     ALIDMY+KCGS+ENA+ +F  +    V  WNA+I GLA+HG GE A  L  
Sbjct: 342 FKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFS 401

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
            M+     PD +TF G+L AC HAG V EGL  F  M R + + PE++HYGCMVD+LGR 
Sbjct: 402 RMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRG 461

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           G ++ A  L+  MP+EPN +IW TLL ACR +    + E V   L+  + S+S +  +LS
Sbjct: 462 GRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSMLS 521

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           N++A  G W++   +R  MK  +++K  G S IE++  VHEF V D+S  +   IY  +D
Sbjct: 522 NIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSIEVDDEVHEFTVFDRSHPKSDRIYKTID 581

Query: 619 NM 620
            +
Sbjct: 582 GL 583


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/619 (35%), Positives = 359/619 (57%), Gaps = 15/619 (2%)

Query: 5   ANYNQPCNSTQST--LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCT 62
           +N NQP  + + +  + L+ +C +L  + Q H  MI TG   + +  +KL A  + S   
Sbjct: 19  SNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFA 78

Query: 63  PLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLML-DNGVSVDKFS 121
            L E+AR +F +      K + F WN +I+ Y+ G DP  ++  F  M+ ++    +K++
Sbjct: 79  SL-EYARKVFDEI----PKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYT 133

Query: 122 ASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
              ++KA + +  +  G  +HG+  K A GSD+F+ N LI  Y  CG L+ A ++F  + 
Sbjct: 134 FPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIK 193

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQLKSGLQFAW 239
            +D VS+NSMI+G+V+ G+ + A ELF  M   +   + ++   VL+  A++++ L+F  
Sbjct: 194 EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRN-LEFGR 252

Query: 240 QIFEKMPER----DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG 295
           Q+   + E     +L   N+ML    KCG ++DA+ LFD M ++D V+W  M+DGYA   
Sbjct: 253 QVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISE 312

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
             + AR + + MP++D+VA NA++  Y +NG   +AL +F  +Q +  +  +  +LV  L
Sbjct: 313 DYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTL 372

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
           SA AQ+G ++ G  IH Y++K    +N     ALI MYSKCG +E + +VF  +E   V 
Sbjct: 373 SACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVF 432

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            W+AMI GLA+HG G  A D+  +M+  +++P+ +TFT +  AC+H GLV E    F  M
Sbjct: 433 VWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQM 492

Query: 476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNV 535
              + + PE +HY C+VD+LGR+G++E A   IE MP+ P+  +W  LL AC+ + NLN+
Sbjct: 493 ESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNL 552

Query: 536 GEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG 595
            E     L+ ++  N  ++VLLSN++A LG W +   +R  M+   LKK PGCS IE++G
Sbjct: 553 AEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDG 612

Query: 596 VVHEFFVRDKSRLQVRDIY 614
           ++HEF   D +      +Y
Sbjct: 613 MIHEFLSGDNAHPMSEKVY 631


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/617 (36%), Positives = 358/617 (58%), Gaps = 36/617 (5%)

Query: 17  TLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L LL  CKTL  +  IHA+MI TG     +  +KL+     SP      +A  +F    
Sbjct: 5   SLSLLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTI- 63

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
              ++    +WN + + ++   DP  AL ++  M+  G+  + ++   +LK+C++    +
Sbjct: 64  ---QEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFK 120

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           EG Q+HG + K  F  DL++   LIS+YV+ G LE A+++ DK   RD VSY ++I GY 
Sbjct: 121 EGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYA 180

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER----DLIS 252
             G IESA ++FD +P+++  ++SWN+ ++GYA+     + A ++F+KM +     D  +
Sbjct: 181 SRGXIESAHKMFDEIPVKD--VVSWNAXISGYAE-TGNYKEALELFKKMMKTNVRPDEST 237

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN-------------MIDGYAKLGRVDI 299
             ++L  C + G ++           R V SW N             +ID Y+K G ++ 
Sbjct: 238 MVTVLSACAQSGSIELG---------RQVHSWINDHGFGXNLKIVNALIDLYSKCGELET 288

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           A  LF  +  +DV++ N ++GGY       +AL +F +M       P+D +++ +LSA A
Sbjct: 289 ACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDM-LRSGEKPNDVTMLSILSACA 347

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGV--ALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
            LG ID G  IH Y++K    +     +  +LIDMY+KCG IE A +VF+ + + S+  W
Sbjct: 348 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSW 407

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
           NAMI G A+HG    AFD+   M +  IEPDDITF GLL+AC+H+G++  G   F  M R
Sbjct: 408 NAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTR 467

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
            +KL P+L+HYGCM+D+ G +G  + A  +I  M MEP+ VIW +LL AC+ + N+ +GE
Sbjct: 468 DYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGE 527

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVV 597
             A++LI ++  N  SYVLLSN++A    WN+  + R+++ ++ +KK+PGCS IE++ VV
Sbjct: 528 SYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVV 587

Query: 598 HEFFVRDKSRLQVRDIY 614
           HEF + DK   + R+IY
Sbjct: 588 HEFIIGDKFHPRNREIY 604


>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
          Length = 1033

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/593 (38%), Positives = 342/593 (57%), Gaps = 74/593 (12%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           ST   + +L KCK+L ++ QIHA+MI T  + +    ++L+A  S S  +   ++A  +F
Sbjct: 5   STNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVF 64

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLD--NGVSVDKFSASLVLKACS 130
            +     +  + F++ A+IK +S   +P E+L+++  ML   N  S  +FS   VLKAC 
Sbjct: 65  SRI----QHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACG 120

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
           +L   +EG Q+HG + K     D F+ N                               S
Sbjct: 121 KLLAFDEGRQVHGQVLKTHLWFDPFVGN-------------------------------S 149

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL 250
           M+  Y+  G IE AR +FD                                  +MP RD+
Sbjct: 150 MVRMYIDFGEIELARRVFD----------------------------------RMPNRDV 175

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
           +SWNSM+ G +K G+++ A  LFD+MP+RD+VS   MIDGY K GR ++A ++F+ M  +
Sbjct: 176 VSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKCGRCELAEKVFETMSDK 235

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
           DVV   +M+  YV+N   MKAL++F  M   L L PD  ++V VLSAIA LG +++G  +
Sbjct: 236 DVVTWTSMISAYVQNRCPMKALDLFREM-LSLGLRPDGPAIVSVLSAIADLGFVEEGKWL 294

Query: 371 HRYLEKDQFSLN-GKHGVALIDMYSKCGSIENAIKVFEQIEDG-SVDHWNAMINGLAIHG 428
           H Y+  ++  L+ G  G ALIDMYSKCG IENA  VF  I    ++  WN+MI+GLAIHG
Sbjct: 295 HAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHG 354

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
           L   A D+ +EMER+ IEP++ITF GLL+ C+H GLV+EG   FE M   +K+ P +QHY
Sbjct: 355 LAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHY 414

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
           GCM+D+ GRAG +E A  +I++MP E + + W+ +LSA   + ++ +G+  A   I +  
Sbjct: 415 GCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAP 474

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
            +SSSYVLLSN++A  G W+D  ++R MM++R +KK+ GCS + ++G VHEF 
Sbjct: 475 DDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVBGKVHEFL 527


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/621 (35%), Positives = 361/621 (58%), Gaps = 17/621 (2%)

Query: 5   ANYNQPCNS---TQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPC 61
           +N NQP  +   ++ T+ L+ +C +L  + Q HA MI TG   + +  +KL A  + S  
Sbjct: 19  SNPNQPTTNNERSRHTISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSF 78

Query: 62  TPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLML--DNGVSVDK 119
             L E+AR +F +      + + F WN +I+ Y+ G DP  ++  F  M+  ++    +K
Sbjct: 79  ASL-EYARKVFDEI----PQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNK 133

Query: 120 FSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK 179
           ++   ++KA + +  +  G  +HG+  K A GSD+F+ N LI  Y  CG L+ A ++F  
Sbjct: 134 YTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTT 193

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQLKSGLQF 237
           +  +D VS+NSMI+G+V+ G+ + A ELF  M   +   + ++   VL+  A+++  L+F
Sbjct: 194 IKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRD-LEF 252

Query: 238 AWQIFEKMPER----DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAK 293
             ++   + E     +L   N+ML    KCG ++DA+ LFD M ++D V+W  M+DGYA 
Sbjct: 253 GRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAI 312

Query: 294 LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI 353
               + AR + + MPK+D+VA NA++  Y +NG   +AL +F  +Q +  +  +  +LV 
Sbjct: 313 SEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVS 372

Query: 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
            LSA AQ+G ++ G  IH Y++K+   +N     ALI MYSKCG +E A +VF  +E   
Sbjct: 373 TLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRD 432

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE 473
           V  W+AMI GLA+HG G  A D+  +M+  +++P+ +TFT +  AC+H GLV E    F 
Sbjct: 433 VFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFY 492

Query: 474 LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENL 533
            M   + + PE +HY C+VD+LGR+G++E A   IE MP+ P+  +W  LL AC+ + NL
Sbjct: 493 KMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANL 552

Query: 534 NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
           ++ E     L+ ++  N  ++VLLSN++A  G W++   +R  M+   LKK PGCS IE+
Sbjct: 553 SLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEI 612

Query: 594 EGVVHEFFVRDKSRLQVRDIY 614
           +G++HEF   D +      +Y
Sbjct: 613 DGMIHEFLSGDNAHPMSEKVY 633


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/612 (37%), Positives = 362/612 (59%), Gaps = 52/612 (8%)

Query: 19  LLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLT-EFARYIFFKYHA 77
           L+L++CKT  D+ Q+HA ++ T  + +  +T  ++ S  ++   P T ++A  IF     
Sbjct: 26  LILQQCKTPKDLQQVHAHLLKTRRLLDPIITEAVLES--AALLLPDTIDYALSIFNHI-- 81

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
             +K +   +N +I+  +    P  AL++F  M +  V  DKF+ S VLKACSR+  + E
Sbjct: 82  --DKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALRE 139

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G Q+H L+ K  F S+ F++N LI +Y  CG          ++G+               
Sbjct: 140 GEQVHALILKSGFKSNEFVENTLIQMYANCG----------QIGV--------------- 174

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-----QFAWQIFEKMPERDLIS 252
                 AR +FD MP  ER++++WNS+L+GY   K+GL     +   +I E   E D ++
Sbjct: 175 ------ARHVFDGMP--ERSIVAWNSMLSGYT--KNGLWDEVVKLFRKILELRIEFDDVT 224

Query: 253 WNSMLHGCVKCGKMDDAQAL----FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
             S+L  C +   ++  + +      K  +R+     ++ID YAK G+VD AR+LFDEM 
Sbjct: 225 MISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMD 284

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
           KRDVVA +AM+ GY +     +AL +F  MQ +  ++P++ ++V VL + A LG  + G 
Sbjct: 285 KRDVVAWSAMISGYAQADRCKEALNLFHEMQ-KGNVYPNEVTMVSVLYSCAMLGAYETGK 343

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            +H Y++K +  L    G  LID Y+KCG I+ +++VF+++   +V  W A+I GLA +G
Sbjct: 344 WVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNG 403

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
            G++A +    M    ++P+D+TF G+L+AC+HA LV +G   F  MRR   +EP ++HY
Sbjct: 404 EGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHY 463

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
           GCMVDILGRAG +E A   I++MP  PN V+WRTLL++CR ++N+ + E   +H+  ++ 
Sbjct: 464 GCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEP 523

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
           ++S  Y+LLSN +A +G   DA RVRS++KE+ +KK+PGCS IEL+GVVHEFF  D    
Sbjct: 524 AHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHK 583

Query: 609 QVRDIYYMLDNM 620
             ++I+  LD M
Sbjct: 584 HSKEIHDALDKM 595



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 118/467 (25%), Positives = 205/467 (43%), Gaps = 45/467 (9%)

Query: 16  STLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           S L    + K L +  Q+HA ++ +GF  N  +   L+  +++  C  +   AR++F   
Sbjct: 126 SVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYAN--CGQIG-VARHVFDGM 182

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
                ++    WN+++  Y+      E + +F  +L+  +  D  +   VL AC RL  +
Sbjct: 183 ----PERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANL 238

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
           E G  I   +       +  L   LI +Y +CG ++ AR+LFD+M  RD V++++MI GY
Sbjct: 239 EIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGY 298

Query: 196 VKSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISW 253
            ++   + A  LF  M       N ++  SVL   A L +     W              
Sbjct: 299 AQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKW-------------- 344

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
              +H  +K  KM           K  V     +ID YAK G +D +  +F EM  ++V 
Sbjct: 345 ---VHFYIKKKKM-----------KLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVF 390

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
              A++ G   NG    ALE F +M  E  + P+D + + VLSA +    +D+G  +   
Sbjct: 391 TWTALIQGLANNGEGKMALEFFSSM-LENDVKPNDVTFIGVLSACSHACLVDQGRHLFNS 449

Query: 374 LEKDQFSLNGK--HGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHGLG 430
           + +D F +  +  H   ++D+  + G +E A +  + +    +   W  ++     H   
Sbjct: 450 MRRD-FDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNI 508

Query: 431 ELAFDLLMEMERLSIEP-DDITFTGLLNACAHAGLVKEGLLCFELMR 476
           E+A   L  + RL  EP     +  L N  A  G V++ +    L++
Sbjct: 509 EMAEKSLEHITRL--EPAHSGDYILLSNTYALVGRVEDAIRVRSLIK 553


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 233/615 (37%), Positives = 351/615 (57%), Gaps = 43/615 (6%)

Query: 8   NQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF 67
           N P N     L L   CKTL  + Q+HA++IT     + +   +L A  S S  +P   F
Sbjct: 92  NPPSNP--QILSLFNPCKTLRHLKQVHAQIIT-----HHNSPFQLSALASLSALSPFPTF 144

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
             Y    +H   +   P L+N++I+  S    P EAL ++  ML +G+  D  +   V+K
Sbjct: 145 LAYAKTIFHHL-QNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIK 203

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           AC+   +   GL +H  + K  F  D ++ + LI LY     L  A+QLF          
Sbjct: 204 ACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLF---------- 253

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
                       N+ SAR++           +SWN++++GY +    +  A  +F++M  
Sbjct: 254 ------------NLCSARDV-----------VSWNAMIDGYVK-HVEMGHARMVFDRMVC 289

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
           RD+ISWN+M++G    GK+D+A+ LFD+MP+R++VSW +M+ G+ K G V+ A  LF EM
Sbjct: 290 RDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEM 349

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
           P RDVV+ N+M+  Y + G   +AL +FD M+  + + P +A++V +LSA A LG +DKG
Sbjct: 350 PCRDVVSWNSMLACYAQCGKPNEALALFDQMRA-VGVKPTEATVVSLLSACAHLGALDKG 408

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
           + +H Y+  ++  +N   G AL+DMY+KCG I  A +VF  +E   V  WN +I G+AIH
Sbjct: 409 LHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIH 468

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           G  + A  L  EM+   +EP+DITF  +L+AC+HAG+V EG    + M   + +EP+++H
Sbjct: 469 GNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEH 528

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
           YGC++D+L RAG +E A  LI  MPMEPN      LL  CR + N  +GE V K LI + 
Sbjct: 529 YGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQ 588

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
             +S  Y+LLSN++A    W+DAR+VR++MK   + K+PG S IEL+G+VH F   D S 
Sbjct: 589 PCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSH 648

Query: 608 LQVRDIYYMLDNMWT 622
            +   IY  L+ + T
Sbjct: 649 PESNKIYEKLNEIHT 663


>gi|354805159|gb|AER41579.1| CRR4 [Oryza brachyantha]
          Length = 626

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 229/616 (37%), Positives = 355/616 (57%), Gaps = 21/616 (3%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVAS-FSS-SPCTPLTEFARYIF 72
           Q  L +LR   + + + Q HAR++  G   +  L   LVA+ FS+ SP        R+  
Sbjct: 3   QELLRILRTLGSPHHLRQAHARLVAAGLSASPRLLPALVAAAFSAHSP--------RHAS 54

Query: 73  FKYHAFREKKDPFLWNAIIKTYS----HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA 128
               A          N +I+  +    H   P +AL  +  ML  GV  + F+ + +L+A
Sbjct: 55  AALRAAGPAASSVSHNTLIERLAGARGHRPVPADALAAYTAMLAAGVPPNGFTFTFLLRA 114

Query: 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCG---YLEFARQLFDKMGIRDS 185
           C+ LG       +HG + +  FGS++F+QN L+ +Y RCG    +  ARQ+FD+M  RD 
Sbjct: 115 CALLGFPRPCRCVHGQIVRWGFGSEVFVQNTLLDVYYRCGGPGRVAAARQVFDEMVDRDV 174

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM 245
           VS+NS+I  Y+ SG+   A ELF++MP  ERN++SWN+++ G+A++   +  A  +F++M
Sbjct: 175 VSWNSIIGVYMSSGDYTGAMELFEAMP--ERNVVSWNTLVAGFARVGD-MVTAQTVFDRM 231

Query: 246 PERDLISWNSMLHGCVKCGKMDDAQALFDKM-PKRDVVSWANMIDGYAKLGRVDIARRLF 304
           P R+ ISWN M+ G    G ++ A+++FD+M  K+DVVSW  M+  YAK+G +D A+ LF
Sbjct: 232 PSRNAISWNLMISGYASSGDVEAARSMFDRMDQKKDVVSWTAMVSAYAKIGDLDTAKELF 291

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
           D MP +++V+ NAM+ GY  N    +AL  F  M  E    PD+A+LV V+SA AQLG +
Sbjct: 292 DHMPLKNLVSWNAMITGYNHNSRYGEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSV 351

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
           +    I  ++ K    L    G ALIDM++KCG +  A  +F +++   +  W  MI+G 
Sbjct: 352 EYCNWISSFIRKSNVHLTIALGNALIDMFAKCGDVGRAQSIFYEMKTRCIITWTTMISGF 411

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
           A +GL   A  +   M R  +E DD+ F   L AC H GL++EG   F  M   + ++P 
Sbjct: 412 AFNGLCREALLVYNNMCREGVELDDMVFIAALAACVHGGLLQEGWSIFNEMVEQYNIQPR 471

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
           ++HYGC+VD+LGRAG+++ A   IE MP+EP+ VIW TLLS+C  + N    + V+K + 
Sbjct: 472 MEHYGCVVDLLGRAGNLQEAVLFIESMPLEPSVVIWATLLSSCVAHGNAEFIDYVSKKIT 531

Query: 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
            ++  NSS  VL+SN  A  G W+     R++M+   ++K+PG S I++   VHEF  +D
Sbjct: 532 ELEPFNSSYQVLVSNSSALEGRWDGVIGARTIMRNWGIEKVPGSSSIQVGSEVHEFLAKD 591

Query: 605 KSRLQVRDIYYMLDNM 620
               + ++IY  +D +
Sbjct: 592 TMHERRKEIYETVDGL 607


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/628 (35%), Positives = 376/628 (59%), Gaps = 16/628 (2%)

Query: 2   FVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPC 61
           F S++ +    + +S +  LR CK+++ + QI +++   G   +     KL+A  + S  
Sbjct: 85  FSSSSASNLQTNKKSCIECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSL 144

Query: 62  TPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFS 121
             L  +A  IF     + +    F++N ++K Y+     ++ L++F  + ++G+  D F+
Sbjct: 145 GNL-RYAEKIF----NYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFT 199

Query: 122 ASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
              VLKA   L  + +G ++ G + K     D ++ N LI +Y     +E A++LFD+M 
Sbjct: 200 YPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMT 259

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSMPIR------ERNLISWNSVLNGYAQLKSGL 235
            RDSVS+N MI GYV+    E A   F  M         E  ++S  S       L+ G 
Sbjct: 260 TRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGD 319

Query: 236 QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG 295
           +    + +++     I  N++L    KCG ++ A+ +FD+M  ++V+ W +MI GY   G
Sbjct: 320 EIHNYVRKELGFTTRID-NALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCG 378

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
            +  AR LFD+ P RDVV   AM+ GYV+  +   A+ +F  MQ +  + PD  ++V +L
Sbjct: 379 DLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQ-KIKPDKFTVVTLL 437

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
           +  AQLG +++G  IH YL++++ +++   G ALI+MYSKCG ++ ++++F ++ED    
Sbjct: 438 TGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTA 497

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            W ++I GLA++G    A  L  EMER+  +PDDITF G+L+AC+H GLV+EG   F  M
Sbjct: 498 SWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSM 557

Query: 476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI---WRTLLSACRNYEN 532
           +++H++EP+++HYGC++D+LGRAG ++ A  LI+++P+E  +++   +  LLSACR + N
Sbjct: 558 KKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNN 617

Query: 533 LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           +++GE +AK L  ++S +SS + LL+N++A +  W DA++VR  MKE  +KK+PGCS IE
Sbjct: 618 VDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIE 677

Query: 593 LEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           ++G+VHEF V D S  ++ +I  ML+ +
Sbjct: 678 VDGIVHEFLVGDPSHPEMIEICSMLNRV 705


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 227/607 (37%), Positives = 348/607 (57%), Gaps = 14/607 (2%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           L +L +CK+L  + QI A+M++TG I+N    ++LVA  + S    L    R ++     
Sbjct: 61  LSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILY----- 115

Query: 78  FREKK-DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG-VSVDKFSASLVLKACSRLGLI 135
            R K+ + F WNA I+ Y    D +   +++  ML  G +  D  +  L+LK C      
Sbjct: 116 -RIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSS 174

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
             GL + G + K  F  D+F+ N  I++ + CG L  A  +F+K  +RD V++NSMI G 
Sbjct: 175 CLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGC 234

Query: 196 VKSGNIESARELFDSMPIR-----ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL 250
           VK G    A +++  M        E  +I   S  +    L  G +F   I E   E  +
Sbjct: 235 VKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTI 294

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
              N+++   VKCG++  A+ LFD M ++ +VSW  M+ GYA+ G +D+AR +  ++P++
Sbjct: 295 PLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEK 354

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
            VV  NA++ G V+     +AL +F  MQ    + PD  ++V  LSA +QLG +D G+ I
Sbjct: 355 SVVPWNAIISGCVQAKQGKEALALFHEMQIRT-IEPDKVTMVNCLSACSQLGALDVGIWI 413

Query: 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
           H Y+E+ + S++   G AL+DMY+KCG+I  A++VFE+I   +   W A+I GLA+HG  
Sbjct: 414 HHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNA 473

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
           + A     +M  + I PD+ITF G+L+AC H GLV+EG   F  M     + P+L+HY C
Sbjct: 474 QDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSC 533

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           MVD+LGRAGH+E A  L+++MPM  +  +   L  ACR Y N+ +GE  A  L+ +D  +
Sbjct: 534 MVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQD 593

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQV 610
           S +YVLL++M++   MW +AR  R +M ++ ++K PGCS +E+ G+VHEF VRD S  Q 
Sbjct: 594 SGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEINGIVHEFVVRDVSHPQS 653

Query: 611 RDIYYML 617
             IY  L
Sbjct: 654 EWIYECL 660


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/614 (35%), Positives = 349/614 (56%), Gaps = 15/614 (2%)

Query: 14  TQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFF 73
           T   + LL  C++++ + Q+H + I  G   N  L  + V +F  +      ++AR +F 
Sbjct: 18  THPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNR-VMTFCCTHEYGDFQYARRLF- 75

Query: 74  KYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
                 E  +P  F+WN +I+ YS    P+  + ++  ML  GV  D+++   + K  +R
Sbjct: 76  -----DEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTR 130

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
              +E G Q+HG + K     ++F+   L+ +Y+ CG L+ AR +FD     D +++N +
Sbjct: 131 DIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMI 190

Query: 192 IDGYVKSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQLK---SGLQFAWQIFEKMP 246
           I  Y K G  E +R LF  M  ++     ++   VL+  ++LK   +G +    +     
Sbjct: 191 ISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKV 250

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
           E +L+  N+M+     CG+MD A  +F  M  RD++SW  ++ G+  LG +D+AR  FD+
Sbjct: 251 ESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDK 310

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           MP++D V+  AM+ GY+R+    +ALE+F NMQ    + PD+ ++V VL+A A LG ++ 
Sbjct: 311 MPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQAT-NVKPDEFTMVSVLTACAHLGALEL 369

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G  I  Y+++++   +     ALIDMY KCG ++ A  +F ++       W AMI GLA+
Sbjct: 370 GEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAV 429

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           +G GE A D+   M + SI PD+IT+ G+L+AC H GLV +G   F  M   H +EP + 
Sbjct: 430 NGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIA 489

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HYGC+VD+L RAG ++ A  +IE+MP++ N ++W  LL+ CR Y   ++ E V K ++ +
Sbjct: 490 HYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILEL 549

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           +  N + YVLL N++A    WND R +R MM ++ +KK PGCS IE+ G VHEF   D+S
Sbjct: 550 EPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRS 609

Query: 607 RLQVRDIYYMLDNM 620
             Q ++I   LD M
Sbjct: 610 HPQTKNIDAKLDKM 623


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/614 (35%), Positives = 349/614 (56%), Gaps = 15/614 (2%)

Query: 14  TQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFF 73
           T   + LL  C++++ + Q+H + I  G   N  L  + V +F  +      ++AR +F 
Sbjct: 39  THPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNR-VMTFCCTHEYGDFQYARRLF- 96

Query: 74  KYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
                 E  +P  F+WN +I+ YS    P+  + ++  ML  GV  D+++   + K  +R
Sbjct: 97  -----DEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTR 151

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
              +E G Q+HG + K     ++F+   L+ +Y+ CG L+ AR +FD     D +++N +
Sbjct: 152 DIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMI 211

Query: 192 IDGYVKSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQLK---SGLQFAWQIFEKMP 246
           I  Y K G  E +R LF  M  ++     ++   VL+  ++LK   +G +    +     
Sbjct: 212 ISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKV 271

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
           E +L+  N+M+     CG+MD A  +F  M  RD++SW  ++ G+  LG +D+AR  FD+
Sbjct: 272 ESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDK 331

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           MP++D V+  AM+ GY+R+    +ALE+F NMQ    + PD+ ++V VL+A A LG ++ 
Sbjct: 332 MPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQAT-NVKPDEFTMVSVLTACAHLGALEL 390

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G  I  Y+++++   +     ALIDMY KCG ++ A  +F ++       W AMI GLA+
Sbjct: 391 GEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAV 450

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           +G GE A D+   M + SI PD+IT+ G+L+AC H GLV +G   F  M   H +EP + 
Sbjct: 451 NGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIA 510

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HYGC+VD+L RAG ++ A  +IE+MP++ N ++W  LL+ CR Y   ++ E V K ++ +
Sbjct: 511 HYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILEL 570

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           +  N + YVLL N++A    WND R +R MM ++ +KK PGCS IE+ G VHEF   D+S
Sbjct: 571 EPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRS 630

Query: 607 RLQVRDIYYMLDNM 620
             Q ++I   LD M
Sbjct: 631 HPQTKNIDAKLDKM 644


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/617 (35%), Positives = 371/617 (60%), Gaps = 16/617 (2%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           + +S +  LR CK+++ + QI +++   G   +     KL+A  + S    L  +A  IF
Sbjct: 142 TKKSCIECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNL-RYAEKIF 200

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL 132
                + +    F++N ++K Y+     ++ L++F  + ++G+  D F+   VLKA   L
Sbjct: 201 ----NYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCL 256

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
             + +G ++ G + K     D ++ N LI +Y     +E A++LFD+M  RDSVS+N MI
Sbjct: 257 RDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMI 316

Query: 193 DGYVKSGNIESARELFDSMPIR------ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP 246
            GYV+    E A   F  M         E  ++S  S       L+ G +    + +++ 
Sbjct: 317 SGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELG 376

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
               I  N++L    KCG ++ A+ +FD+M  ++V+ W +MI GY   G +  AR LFD+
Sbjct: 377 FTTRID-NALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDK 435

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
            P RDVV   AM+ GYV+  +   A+ +F  MQ +  + PD  ++V +L+  AQLG +++
Sbjct: 436 SPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQ-RVKPDKFTVVTLLTGCAQLGALEQ 494

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G  IH YL++++ +++   G ALI+MYSKCG ++ ++++F ++ED     W ++I GLA+
Sbjct: 495 GKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAM 554

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           +G    A  L  EMER+  +PDDITF G+L+AC+H GLV+EG   F  M+++H++EP+++
Sbjct: 555 NGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVE 614

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI---WRTLLSACRNYENLNVGEPVAKHL 543
           HYGC++D+LGRAG ++ A  LI+++P+E  +++   +  LLSACR + N+++GE +AK L
Sbjct: 615 HYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKL 674

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVR 603
             ++S +SS + LL+N++A +  W DA++VR  MKE  +KK+PGCS IE++G+VHEF V 
Sbjct: 675 ENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVG 734

Query: 604 DKSRLQVRDIYYMLDNM 620
           D S  ++ +I  ML+ +
Sbjct: 735 DPSHPEMMEICSMLNRV 751


>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 224/608 (36%), Positives = 348/608 (57%), Gaps = 55/608 (9%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L KC  LN V Q+HA+++ +    +  +  KL+++FS           R +    +AF +
Sbjct: 27  LHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAFS---------LCRQMLLATNAFNQ 77

Query: 81  KKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR---LGLI 135
            + P   L+N +I+ +SH   P +A   F  M  +G   D F+   +LK C+    L +I
Sbjct: 78  VQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVI 137

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
           E    +H  + K  F SD+F+ N                               S+ID Y
Sbjct: 138 E---SVHAQIEKFGFMSDVFVPN-------------------------------SLIDSY 163

Query: 196 VKSGN--IESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLIS 252
            K G+  I +A++LF SM  R R+++SWNS+++G A  K GL + A ++F++MPE+D IS
Sbjct: 164 SKCGSCGISAAKKLFVSMGAR-RDVVSWNSMISGLA--KGGLYEEARKVFDEMPEKDGIS 220

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
           WN+ML G VK GKMDDA  LFD+MP+R+VVSW+ M+ GY K G +++AR LFD+MP +++
Sbjct: 221 WNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNL 280

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           V+   ++ G+   G + +A+ +FD M+ +  L  D+ +++ +L+A A+ G +  G  IH 
Sbjct: 281 VSWTIIVSGFAEKGLAREAISLFDQME-KACLKLDNGTVMSILAACAESGLLGLGEKIHA 339

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
            ++ + F    +   AL+DMY+KCG +  A  VF  I++  V  WNAM+ GLA+HG G  
Sbjct: 340 SIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVK 399

Query: 433 AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV 492
           A +L   M+     P+ +T  G+L AC HAGL+ +G+  F  M R + L PE++HYGCMV
Sbjct: 400 ALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRYFSTMERDYTLVPEVEHYGCMV 459

Query: 493 DILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552
           D+LGR G +E A  LI +MPM PN +IW TLL ACR +  + +   V  HL+ ++ ++S 
Sbjct: 460 DLLGRKGRLEEAIRLIRNMPMAPNAIIWGTLLGACRMHNAVELAREVLDHLVELEPTDSG 519

Query: 553 SYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRD 612
           ++ +LSN++A  G WN     R  M+    KK  G S IE+   VHEF V D+S  +  +
Sbjct: 520 NFSMLSNIYAAAGDWNCVANTRLRMRSIGTKKPSGASSIEVNNEVHEFTVFDRSHPKSDN 579

Query: 613 IYYMLDNM 620
           IY +++ +
Sbjct: 580 IYQVINGL 587


>gi|359497527|ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
 gi|296083555|emb|CBI23551.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/571 (37%), Positives = 336/571 (58%), Gaps = 12/571 (2%)

Query: 26  TLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPF 85
           ++    Q+HA ++  G    +HL   L      S        A+Y+    H   +  D F
Sbjct: 16  SVKQAKQVHALILIHGL---SHLEPILARQILLSASNYSATVAQYVHSVLH-HSKSPDSF 71

Query: 86  LWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
            W   I+  +     KEA  ++  M   G+    F+ S  LKAC+R+     GL IHG +
Sbjct: 72  SWACAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAYRMGGLSIHGQV 131

Query: 146 RKVAF---GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
           +K  F   G  ++++  L+  Y + G +E AR++FD+M  R+ VS+NSM+ GY+KSG++ 
Sbjct: 132 QKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLV 191

Query: 203 SARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVK 262
            A+ +FD +P  ++++ISWNS+++GYA+    ++ A  +F++MPER+  SWN+M+ G V+
Sbjct: 192 VAQRVFDEIP--QKDVISWNSMISGYAR-AGDMEKALSLFQQMPERNFASWNAMISGYVE 248

Query: 263 CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGY 322
            G +D A++ FD MP+R+ VSW  MI GY+K G VD A  LFD++  +D++  NAM+  Y
Sbjct: 249 FGDIDSARSFFDAMPQRNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACY 308

Query: 323 VRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
            +N    +AL++F+NM   ++ + PD+ +L  V+SA +QLG +  G  I  Y+ +    +
Sbjct: 309 AQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEM 368

Query: 382 NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEME 441
           +G    AL+D+Y+KCGSI+ A ++F  +    +  + AMI G  I+G    A  L  EM 
Sbjct: 369 DGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMV 428

Query: 442 RLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHI 501
              I P+ ITF GLL A  HAGLV+EG  CF  M++ + L P + HYG MVD+ GRAG +
Sbjct: 429 DAQIFPNSITFIGLLTAYNHAGLVEEGYHCFTSMKK-YNLVPSVDHYGIMVDLFGRAGRL 487

Query: 502 EAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF 561
           + A  LI+ MPM+P+  +W  LL ACR + N+  GE  A+H   ++   +    LLSN++
Sbjct: 488 QEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYCSLLSNIY 547

Query: 562 AGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           A    W+D +R+R + KE+   K+PGCSW+E
Sbjct: 548 ASGERWDDVKRLRKVTKEKGFSKIPGCSWME 578


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/603 (37%), Positives = 340/603 (56%), Gaps = 45/603 (7%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LLR CKT+  + ++ A++IT GF  N ++   +V S+       L + A       H F 
Sbjct: 31  LLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSW-----VGLKQMAH----ARHLFD 81

Query: 80  EKKDPF--LWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
              DP   LWNAI + Y H    +E + +F  M    V  + F+  LVLK+C+++G   E
Sbjct: 82  HFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVE 141

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G +IH  + K     + F+                                 ++ID Y  
Sbjct: 142 GEEIHCEVIKGGLEGNQFVAT-------------------------------TLIDVYSG 170

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
              I SA +LF  M   ERN+++W S+++GY  L + +  A ++F+  PERD++ WN M+
Sbjct: 171 GRAIGSAYKLFVGM--LERNIVAWTSMISGYI-LCNRVALARRLFDLAPERDVVLWNIMV 227

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNA 317
            G ++ G M  A+ LFD MP RD +SW  M++GYA  G V+   +LF+EMP+R+V + N 
Sbjct: 228 SGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNG 287

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           ++GGY  NG   + L  F  M  +  + P+DA+LV VLSA A+LG +D G  +H Y    
Sbjct: 288 LIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATI 347

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLL 437
            F  +   G ALIDMYSKCG IENA++VFE ++   +  WN+MI GLA HG G  A  L 
Sbjct: 348 GFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLF 407

Query: 438 MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
            +M+    +PD ITF G+L +C H GLV+EG   F  M   + + P+++HYGCMVD+ GR
Sbjct: 408 HQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGR 467

Query: 498 AGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557
           AG ++ A   ++ MPME + VIW  LL ACR Y+N+++ E   + LI ++  N ++YVLL
Sbjct: 468 AGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLL 527

Query: 558 SNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           SN++  LG W D  R++ +M++   KKLPGCS IE+   V EF+  D+   Q ++IY +L
Sbjct: 528 SNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSVVEFYSLDERHSQSKEIYGVL 587

Query: 618 DNM 620
             +
Sbjct: 588 KGL 590


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/644 (35%), Positives = 369/644 (57%), Gaps = 40/644 (6%)

Query: 8   NQPCNS-TQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTE 66
           N P +S  +S + LL  C T+ ++NQIH++ I TG   N    TK++  F  +  +    
Sbjct: 28  NTPLHSFVKSPISLLETCNTMYEINQIHSQTIKTGLSSNHLFLTKVII-FCCTKESGDVY 86

Query: 67  FARYIFFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL 124
           +AR +F       E   P  F+WN +IK YS     +  + ++ LML + +  D F+   
Sbjct: 87  YARKVF------DEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPF 140

Query: 125 VLKACSRLGLIEEG------LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD 178
           +LK  ++   ++ G        IHG L      S+LF+Q   I L+  CG + +AR++FD
Sbjct: 141 LLKGFTKDMALKYGKVLLNHAVIHGFL-----DSNLFVQKGFIHLFSLCGLVNYARKIFD 195

Query: 179 KMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSV-----LNGYAQLKS 233
                + V++N ++ GY +    E ++ LF  M  ++   +S NSV     L+  ++LK 
Sbjct: 196 MGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEME-KKCECVSPNSVTLVLMLSACSKLKD 254

Query: 234 GLQ----FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMID 289
            +     +   I E + E +LI  N+++     CG+MD A+ +FD+M  RDV+SW +++ 
Sbjct: 255 LVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVT 314

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
           G+A   R+D+AR+ FD+MP+RD V+  AM+ GY+R     + L +F +MQ    + PD+ 
Sbjct: 315 GFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMS-NVKPDEF 373

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           ++V +L+A A LG ++ G     Y++K++   +   G ALIDMY KCG++E A K+F ++
Sbjct: 374 TMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEM 433

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
           +      W AMI GLA +G GE A  +   M   S+ PD+IT+ G++ AC H GLV +G 
Sbjct: 434 QKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGK 493

Query: 470 LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRN 529
             F  M   H ++P L HYGCMVD+LGRAGH++ A  +I +MP++PN ++W +LL ACR 
Sbjct: 494 HFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRV 553

Query: 530 YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCS 589
           ++N+ + E  A  ++ ++  N + YVLL N++A    W +   VR MM ER +KK+PGCS
Sbjct: 554 HKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCS 613

Query: 590 WIELEGVVHEFFVRDKSRLQVRDIYYMLDNM--------WTPDS 625
            +E+ G+V+EF   DKS  Q ++IY  L+NM        ++PD+
Sbjct: 614 LMEMNGIVYEFVAGDKSHPQSKEIYAKLENMKQDLSNAGYSPDT 657


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/606 (37%), Positives = 355/606 (58%), Gaps = 18/606 (2%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           L LL  CK+ + + QI A+MI TG I +   +++L++  + S        +R + +    
Sbjct: 57  LSLLENCKSFSQLKQIQAQMILTGLILDGFASSRLISFCAISE-------SRNLDYCIKI 109

Query: 78  FREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDN-GVSVDKFSASLVLKACSRLGL 134
               ++P  F WNA+I+      +P++ LV++  ML   G   D ++ S + K C+ L L
Sbjct: 110 LNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVL 169

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
              G +I G + K+ F  D++L N +I + V  G    A ++FD+  +RD VS+NS+I+G
Sbjct: 170 SYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLING 229

Query: 195 YVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL-- 250
           YV+      A  ++  M     + + ++   V++  AQL+S L+   +I   + E  L  
Sbjct: 230 YVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLES-LKLGREIHRYIEESGLNL 288

Query: 251 -ISW-NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
            IS  N+++   VKCG ++  + LFD M K+ VVSW  MI GYAK G +D+A +LF +MP
Sbjct: 289 KISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMP 348

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
           +++VVA NAM+G  V+   S +ALE+F  MQ    + PD  +++  LSA +QLG +D G+
Sbjct: 349 EKNVVAWNAMIGSCVQANLSFEALELFREMQWS-NMKPDKVTMLHCLSACSQLGALDTGM 407

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
             H Y++K   SL+   G ALIDMY+KCG++  A++VF ++   +   W A+I GLA++G
Sbjct: 408 WTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYG 467

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
               A     +M    + PD+ITF G+L AC H GLV+EG   F+ M+    L P+ +HY
Sbjct: 468 NVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHY 527

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
            CMV++LGRAG +E A  LI+ MPME + ++W  L  AC  + NL +GE  A  L+ +D 
Sbjct: 528 SCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGERAASKLLDLDP 587

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
            +S  YVLL+NM+   G W +A+ +R MM ER ++K PG S IE+ G+++EF VRDKS  
Sbjct: 588 HDSGIYVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSIEVNGIINEFIVRDKSHP 647

Query: 609 QVRDIY 614
           Q   IY
Sbjct: 648 QSEQIY 653


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/603 (37%), Positives = 340/603 (56%), Gaps = 45/603 (7%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LLR CKT+  + ++ A++IT GF  N ++   +V S+       L + A       H F 
Sbjct: 73  LLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVG-----LKQMAH----ARHLFD 123

Query: 80  EKKDPF--LWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
              DP   LWNAI + Y H    +E + +F  M    V  + F+  LVLK+C+++G   E
Sbjct: 124 HFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVE 183

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G +IH  + K     + F+                                 ++ID Y  
Sbjct: 184 GEEIHCEVIKGGLEGNQFVAT-------------------------------TLIDVYSG 212

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
              I SA +LF  M   ERN+++W S+++GY  L + +  A ++F+  PERD++ WN M+
Sbjct: 213 GRAIGSAYKLFVGM--LERNIVAWTSMISGYI-LCNRVALARRLFDLAPERDVVLWNIMV 269

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNA 317
            G ++ G M  A+ LFD MP RD +SW  M++GYA  G V+   +LF+EMP+R+V + N 
Sbjct: 270 SGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNG 329

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           ++GGY  NG   + L  F  M  +  + P+DA+LV VLSA A+LG +D G  +H Y    
Sbjct: 330 LIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATI 389

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLL 437
            F  +   G ALIDMYSKCG IENA++VFE ++   +  WN+MI GLA HG G  A  L 
Sbjct: 390 GFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLF 449

Query: 438 MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
            +M+    +PD ITF G+L +C H GLV+EG   F  M   + + P+++HYGCMVD+ GR
Sbjct: 450 HQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGR 509

Query: 498 AGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557
           AG ++ A   ++ MPME + VIW  LL ACR Y+N+++ E   + LI ++  N ++YVLL
Sbjct: 510 AGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLL 569

Query: 558 SNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           SN++  LG W D  R++ +M++   KKLPGCS IE+   V EF+  D+   Q ++IY +L
Sbjct: 570 SNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSVVEFYSLDERHSQSKEIYGVL 629

Query: 618 DNM 620
             +
Sbjct: 630 KGL 632


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 228/624 (36%), Positives = 361/624 (57%), Gaps = 17/624 (2%)

Query: 7   YNQPCNS--TQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPL 64
           +N P N   T  TLL++  C T+  + QI ARM  TG I +    ++++A F +   +  
Sbjct: 148 WNSPTNVIITNPTLLIMESCSTMRQLKQIQARMTLTGIITHAFPVSRVIA-FCALAHSGD 206

Query: 65  TEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL 124
             +A  IF +     E+ + F+WN +I+ Y +   P  A   F  M    V +D  S   
Sbjct: 207 LHYAHTIFNRV----EQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVF 262

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
            LKAC +   + EG  ++ ++ K+ F  +L ++N LI  Y   G L+ ARQ+FD+   +D
Sbjct: 263 ALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKD 322

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIF 242
            V++ +MIDGY      E A E+F+ M +   E N ++  +V++  + +   L+   ++ 
Sbjct: 323 VVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDM-GNLEMGKRVH 381

Query: 243 EKMPERD----LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVD 298
           EK+ E++    L   N++L   VKC  + DA+ LFD+M  +DV SW +M++GYAK G ++
Sbjct: 382 EKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLE 441

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
            ARR FD+ P+++ V  +AM+ GY +N    ++L++F  M  E  + P + +LV VLSA 
Sbjct: 442 SARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMM-ERGVVPIEHTLVSVLSAC 500

Query: 359 AQLGHIDKGVAIHRYLEKDQF-SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
            QL  ++ G  IH+Y    +   L+     A++DMY+KCGSI+ A +VF  + + ++  W
Sbjct: 501 GQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISW 560

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
           N MI G A +G  + A ++  +M  +  EP++ITF  LL AC+H GL+ EG   F+ M R
Sbjct: 561 NTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMER 620

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
            + ++PE  HY CMVD+LGR G +E A  LI +MPM+P +  W  LL+ACR + N+ +  
Sbjct: 621 KYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELAR 680

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVV 597
             A +L+ +D  +S  YVLL+N  A    W+D RRVRS+MK++ +KK+PG S IE++G  
Sbjct: 681 LSAHNLLRLDPEDSGIYVLLANTCANDRKWSDVRRVRSLMKDKGVKKIPGYSLIEIDGGF 740

Query: 598 HEFFVRDKSRLQVRDIYYM-LDNM 620
            EF V D+S  Q  +IY +  DN+
Sbjct: 741 VEFLVADESHPQSEEIYKLECDNL 764


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/586 (38%), Positives = 348/586 (59%), Gaps = 21/586 (3%)

Query: 45  NTHLTTKLVASFS-SSPCTPLTEF-ARYIFFKYHAFREKKDPFLWNAIIKTYS-----HG 97
            +  + +LVA+F+ S P +P     A  I     +  +   P+  NA  +  S     H 
Sbjct: 42  TSPFSDRLVAAFALSDPASPRPLLHALAILASLPSPPDSASPY--NAAFRALSLCPHRHL 99

Query: 98  LDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQ 157
           +D     +   L+  +    D  +   +LKAC+RL     G  + G ++K+ F +D+F+ 
Sbjct: 100 VDRHCLPLYRALLCSSSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVV 159

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELF-----DSMP 212
           N  +  +   G +  AR+LFD+   RD VS+N++I GYV+SG    A ELF     D   
Sbjct: 160 NAGVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKA 219

Query: 213 IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLIS----WNSMLHGCVKCGKMDD 268
           +R   +    +V +G AQ+   L+   ++ E +  + +       N+++   VKCG ++ 
Sbjct: 220 VRPDEVTMIGAV-SGCAQM-GDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLEL 277

Query: 269 AQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYS 328
           A+++F+++  + VVSW  MI G+A+LG ++ AR LFDEMP+RDV   NA+M GYV+N   
Sbjct: 278 AKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQG 337

Query: 329 MKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVA 388
            +A+ +F  MQ E  + P++ ++V +LSA +QLG ++ G+ +H Y+++ Q  L+   G +
Sbjct: 338 KEAIALFHEMQ-ESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTS 396

Query: 389 LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD 448
           L+DMY+KCG+I+ AI +F++I D +   W AMI GLA HG  + A +    M  L ++PD
Sbjct: 397 LVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPD 456

Query: 449 DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLI 508
           +ITF G+L+AC HAGLVKEG   F LM   + LE +++HY CM+D+LGRAGH++ A  L+
Sbjct: 457 EITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLV 516

Query: 509 EDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWN 568
             MPM+P+ V+W  L  ACR + N+ +GE  A  L+ +D S+S  YVLL+NM+A   M  
Sbjct: 517 NTMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRK 576

Query: 569 DARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
            A +VR MM+   ++K+PGCS IEL GVVHEF V+DKS L    IY
Sbjct: 577 KADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHLDTIAIY 622


>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/616 (35%), Positives = 347/616 (56%), Gaps = 37/616 (6%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
           Q  L +L+ CK + ++ Q H ++   G   +  +  KL+   + S    L ++A +    
Sbjct: 3   QKMLRILQHCKNIRELKQTHLQIFIHGLQHSDFMLPKLI---TVSSAFNLLDYATH---- 55

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
                                     KEAL ++  M    V  + F+ + +LK       
Sbjct: 56  --------------------------KEALRVYSRMKALMVEANSFTFTFLLKCFETSQA 89

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY-LEFARQLFDKMGIRDSVSYNSMID 193
           +E+G  IHG + K+ FGS +F+QN L+  Y  C   L  A ++F++M  RD +S+NSMI 
Sbjct: 90  LEDGRVIHGEILKLGFGSSVFVQNSLLGFYANCSENLGSAYRVFEEMPERDVISWNSMIS 149

Query: 194 GYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISW 253
            Y+  G I+SA  L D MP  ERN+++WNSV+ G ++    ++ A  +FE+MP R+ +SW
Sbjct: 150 AYMTRGEIQSAIGLLDKMP--ERNIVTWNSVVCGLSK-AGNMELAHSVFEQMPLRNEVSW 206

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
           NSM+ G V+ G +  AQ++F +MP++ VVSW  MI GYA  G +  A  +F+ MP ++VV
Sbjct: 207 NSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVV 266

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
           + NAM+ GYV N    +AL +F +M       PD  +L+ +LSA A LG ++ G  I+ Y
Sbjct: 267 SWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSY 326

Query: 374 LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
           ++K++  L+   G ALIDM++KCG +ENA +VF  +    +  W  M++GLA++G    A
Sbjct: 327 IKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREA 386

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493
            +L  +M     +PDD+ F  +L+AC H GLV+EG   F+ M +   ++P ++HYGCMVD
Sbjct: 387 INLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVD 446

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS 553
           +LGRAG +E A      M ++PN VIW TLL  C+ + N ++ + V + ++  + SN S 
Sbjct: 447 LLGRAGKLEEAVRFTARMHLKPNAVIWATLLFCCKIHGNGDLLKSVTEKIMDQEPSNPSY 506

Query: 554 YVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
             L+SN+ A  G W D    R  M+++ ++K+PGCS I++   VHEF  +D   +Q ++I
Sbjct: 507 LTLVSNLSASFGRWEDVLSFRVAMRQQRMEKVPGCSSIQVGNRVHEFLAKDTRHVQRKEI 566

Query: 614 YYMLDNMWTPDSVATS 629
           Y  L +      + T+
Sbjct: 567 YRALSHYKNATEMETT 582



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 12/181 (6%)

Query: 8   NQPCNSTQSTLL-LLRKCKTLNDVNQIHARMITTGFIKNT-HLTTKLVASFSS--SPCTP 63
           N  C   Q+TL+ +L  C  L  +   H + I +   KN  HL+  L  +     + C  
Sbjct: 294 NGECRPDQTTLISILSACAHLGSLE--HGKWINSYIKKNKLHLSIPLGNALIDMFAKCGD 351

Query: 64  LTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSAS 123
           + E A+ +F  +H    K+    W  ++   +     +EA+ +F  M   G   D     
Sbjct: 352 V-ENAKEVF--HHM--SKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFI 406

Query: 124 LVLKACSRLGLIEEGLQIHG-LLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI 182
            VL AC+  GL+EEG ++   ++++      +    C++ L  R G LE A +   +M +
Sbjct: 407 AVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVRFTARMHL 466

Query: 183 R 183
           +
Sbjct: 467 K 467


>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
 gi|194692242|gb|ACF80205.1| unknown [Zea mays]
 gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
          Length = 590

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/619 (37%), Positives = 353/619 (57%), Gaps = 47/619 (7%)

Query: 10  PCNSTQSTLLL--LRKCKTLNDVNQIHARMITTGFIKNT--HLTTKLVASFSSSPCTPLT 65
           PC +     LL  LR C++ +   Q HA ++T+G +  +   L+  L+ + +S P     
Sbjct: 4   PCPAVALPTLLSRLRACRSASHALQCHALLLTSGHLAASPLRLSNHLLLALASVPSA--A 61

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
             A  +F +       +DPF WN  I+ ++    P+ AL+ F  M   GV  D ++   V
Sbjct: 62  ALADVVFARL-PLPAARDPFAWNTAIRLHAPA-RPRAALLYFARMRRCGVRPDAYTFPAV 119

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG--IR 183
           LKAC        GL +H    +    +DLF  N LIS Y R   +   R++FD+ G   R
Sbjct: 120 LKACGCAPGCRAGLLVHAEAVRRGLAADLFTVNALISFYCRILDIRSGRKVFDEAGGVSR 179

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA-QLKSGLQFAWQIF 242
           D VS+NSM+ GYV  G +  A+E+FD MP  +++  SW ++++GY  Q  +G+  A ++F
Sbjct: 180 DLVSWNSMVAGYVGCGEMGLAQEMFDEMP--QKDTFSWATLIDGYGKQGGAGVDRARELF 237

Query: 243 EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
           ++MPERDL+ WNSM+ G  + G+MD+A++LF++MP+R+V+SW+ +IDG+           
Sbjct: 238 DQMPERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGH----------- 286

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQL 361
                     V+C          G + +ALE F +M +C   L PD  + V  +SA AQL
Sbjct: 287 ----------VSC----------GEAKEALEYFQSMLRCG--LRPDRIAAVGAVSACAQL 324

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
           G +++G  +H YLEK +   +     ALIDMY KCG ++ A+ +FE + + SV  WN MI
Sbjct: 325 GALEQGRWLHSYLEKKKLLSDVVVQTALIDMYVKCGCLDLAMLIFESMAERSVVTWNVMI 384

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
            GL  HG G  A  L   ME  S+  DD++  G+L AC HAGLV EGL  F  M++   +
Sbjct: 385 VGLGTHGFGLDAVTLFHRMEAESVAVDDLSVLGMLTACTHAGLVSEGLEIFHRMKKDFGI 444

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
           +P+++HYG +VD+LGRAG ++ AR+ IE MPMEP   +W +LL+ACR++  + + E   +
Sbjct: 445 DPKVEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELWGSLLAACRSHSCVELAELSVE 504

Query: 542 HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
            L  + + +S  YVLLSN++A  GMW D  R+R +M +  ++K  G S IE++G +HEF 
Sbjct: 505 RLADLGADDSGVYVLLSNIYADEGMWGDVLRIRKLMSDEGMRKDIGRSVIEVDGEIHEFV 564

Query: 602 VRDKSRLQVRDIYYMLDNM 620
               S +   ++Y ML N+
Sbjct: 565 NGVGSYICKDEMYLMLWNL 583


>gi|359474320|ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
          Length = 580

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/571 (37%), Positives = 334/571 (58%), Gaps = 12/571 (2%)

Query: 26  TLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPF 85
           ++    Q+HA ++  G    +HL   L      S        A+Y+    H   +  D F
Sbjct: 16  SVKQAKQVHALILIHGL---SHLEPILARQILISASNYSATVAQYVHSVLH-HSKSPDSF 71

Query: 86  LWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
            W   I+  +     KEA  ++  M   G+    F+ S  LKAC+R+     G+ IHG +
Sbjct: 72  SWACAIRFSTQHGQFKEAFALYVQMQRWGLCPTTFALSSALKACARIAYRMGGISIHGQV 131

Query: 146 RKVAF---GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
           +K  F   G  ++++  L+  Y + G +E AR++FD+M  R+ VS+NSM+ GY+KSG++ 
Sbjct: 132 QKFGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLV 191

Query: 203 SARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVK 262
            A+ +FD +P  ++++ISWNS+++GYA+    ++ A  +F++MPER+  SWN+M+ G V+
Sbjct: 192 VAQRVFDEIP--QKDVISWNSMISGYAR-AGDMEKASSLFQQMPERNFASWNAMISGHVE 248

Query: 263 CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGY 322
            G +D A++ FD MP+++ VSW  MI GY+K G VD A  LFD++  +D++  NAM+  Y
Sbjct: 249 FGDIDSARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACY 308

Query: 323 VRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
            +N    +AL +F+NM    + + PD+ +L  V+SA +QLG +  G  I  Y+ +    +
Sbjct: 309 AQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEM 368

Query: 382 NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEME 441
           +G    AL+D+Y+KCGSI+ A ++F  +    +  + AMI G  I+G    A  L  EM 
Sbjct: 369 DGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMV 428

Query: 442 RLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHI 501
              I P+ ITF GLL A  HAGLV+EG  CF  M++ + L P + HYG MVD+ GRAG +
Sbjct: 429 DAQIFPNSITFIGLLTAYNHAGLVEEGYRCFTSMKK-YNLVPSVDHYGIMVDLFGRAGRL 487

Query: 502 EAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF 561
           + A  LI+ MPM+P+  +W  LL ACR + N+  GE  A+H   ++   +    LLSN++
Sbjct: 488 QEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYRSLLSNIY 547

Query: 562 AGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           A    W+D +R+R + KE+   K+PGCSW+E
Sbjct: 548 ASGERWDDVKRLRKVTKEKGFSKIPGCSWME 578


>gi|357478647|ref|XP_003609609.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510664|gb|AES91806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 576

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/575 (37%), Positives = 341/575 (59%), Gaps = 9/575 (1%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           L++KC T+    QIHA++IT      THL    +        T     + YI    H  R
Sbjct: 9   LMKKCSTVKHAKQIHAQIITNNL---THLEPIFIHRILLCDITNYKTISNYILSILHHLR 65

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
              D F W  +I+ +S      EA+ ++  M   G+     + S +LK+C+R+     GL
Sbjct: 66  NP-DSFSWGCVIRFFSQKGQFVEAVSLYVQMRRIGLCPSSHAVSSILKSCARVEDDLCGL 124

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
            IHG + K  F + +++Q  L+ LY + G +  AR++FD+M  ++ VS+NS++ GY+K G
Sbjct: 125 LIHGHVHKFGFDACVYVQTALLDLYCKIGDVVTARKVFDEMPDKNVVSWNSLLSGYIKGG 184

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
           N++  +  FD +P+++  +ISWN +++GYA+    +  A  +F++MPER+  SWN+M+ G
Sbjct: 185 NLDEGQRFFDEIPLKD--VISWNCMVSGYAK-AGKMDRACYLFQQMPERNFASWNTMITG 241

Query: 260 CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM 319
            V CG + +A+ LFD MP+R+ VS   MI GY+K G V  AR LFD+M  +D+++ NAM+
Sbjct: 242 YVDCGSIVEARELFDAMPRRNSVSLITMIAGYSKSGDVHSARELFDQMDDKDLLSYNAMI 301

Query: 320 GGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
             Y ++    +AL++F+ M + +  LHPD  +L  V+SA +QLG+++    I   +    
Sbjct: 302 ACYAQSSKPKEALDLFNVMLKPDSSLHPDKMTLASVISACSQLGNLEHWRWIESQINNFG 361

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
             L+     ALID+Y+KCGSI+ A ++F  +    V  ++AMI G  I+G    A +L  
Sbjct: 362 IVLDDHLATALIDLYAKCGSIDKAYELFHGLRKRDVVAYSAMIYGCGINGRASDAVELFE 421

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
            M    I P+ +T+TG+L A  HAGL +EG  CF  M+  + + P + HYG MVD+LGRA
Sbjct: 422 RMAGECIIPNLVTYTGILTAYNHAGLAEEGYRCFISMKD-NGIVPSVDHYGIMVDLLGRA 480

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           G ++ A  LI  MPM+PN  +W  LL ACR ++NL +GE   +H I ++S  +  Y LLS
Sbjct: 481 GWLDEAYKLIMKMPMQPNVGVWGALLLACRLHDNLKLGEIAVQHCIKLESETAGYYSLLS 540

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
            ++A +G WNDA+++ + ++ + + K+PGCSW +L
Sbjct: 541 GIYATVGKWNDAKKLTTGVEGKKIIKIPGCSWTQL 575


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 223/632 (35%), Positives = 363/632 (57%), Gaps = 22/632 (3%)

Query: 5   ANYNQPCN--STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCT 62
           + +  P    S QS +  L+ CK++  + QIHA++   G  ++     KL+A F + P  
Sbjct: 26  STFTNPTTGLSQQSCISYLKSCKSMTHLKQIHAQIFRVGLHQDIVSLNKLMA-FCTDPFN 84

Query: 63  PLTEFARYIFFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKF 120
               +A  +F KY  +     P   ++N IIK ++   + K  LV+F  + ++G+  D F
Sbjct: 85  GNLNYAEKMF-KYIRY-----PCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNF 138

Query: 121 SASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
           +   V KA   LG + +  ++ GL+ K     D +++N LI +Y +    +  + LFD+M
Sbjct: 139 TYPFVFKAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEM 198

Query: 181 GIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR------ERNLISWNSVLNGYAQLKSG 234
             RD +S+N MI GYVK    E A  +F  M         E  ++S  S      +L+ G
Sbjct: 199 PDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELG 258

Query: 235 LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKL 294
            +    + + +    +I  N++L    KCG +  A+A+F++MP ++V+ W  M+ GYA  
Sbjct: 259 KKIHHYVRDNVKFTPIIG-NALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANC 317

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
           G ++ AR LF+  P RDVV   AM+ GYV+     +A+ +F  MQ    + PD   +V +
Sbjct: 318 GELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIR-KVKPDKFIVVSL 376

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
           L+  AQ G I++G  IH ++++++  ++   G ALI+MY+KCG IE A+++F  +     
Sbjct: 377 LTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDT 436

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
             W ++I GLA++G    A +L  +M++  + PDDITF G+L+AC+H GLV+EG   F  
Sbjct: 437 ASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNS 496

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV---IWRTLLSACRNYE 531
           MR  ++++P+++HYGC+VD+LGRAG +  A  LI+ +P E   +   ++ +LLSACR Y 
Sbjct: 497 MRMEYQIKPKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYG 556

Query: 532 NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           N+ +GE VAK L+  +SS+SS + LL+N++A    W D  +VR  MK+  +KK PGCS I
Sbjct: 557 NVEMGERVAKQLVKFESSDSSVHTLLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSI 616

Query: 592 ELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTP 623
           E++ ++HEFF    S  ++R+IYYML+ M  P
Sbjct: 617 EVDSIIHEFFSGHPSHPEMREIYYMLNIMAKP 648


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/603 (36%), Positives = 339/603 (56%), Gaps = 45/603 (7%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LL+ CKT   V+QI A++I  GF  N ++T KLV     + C  L    + + +    F 
Sbjct: 44  LLQSCKTSKQVHQIQAQIIANGFQYNEYITPKLV-----TICATL----KRMTYARQLFD 94

Query: 80  EKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
           +  DP   LWN++ + Y+     +E + +F  M    +  + F+  +VLK+C ++  + E
Sbjct: 95  QIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIE 154

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G Q+H  L K  F  + F+   LI +Y   G +  A ++F +M  R+ V++ SMI+GY+ 
Sbjct: 155 GEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYIL 214

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
           S ++ SAR LFD  P  ER+++ WN +++GY +    ++ A ++F +MP RD++ WN++L
Sbjct: 215 SADLVSARRLFDLAP--ERDVVLWNIMVSGYIEGGDMVE-ARKLFHEMPNRDVMFWNTVL 271

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNA 317
            G    G ++  + LF++MP+R++ SW                               NA
Sbjct: 272 KGYATNGNVEALEGLFEEMPERNIFSW-------------------------------NA 300

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           ++GGY  NG   + L  F  M  E  + P+DA+LV VLSA A+LG +D G  +H Y E  
Sbjct: 301 LIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESS 360

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLL 437
               N   G AL+DMY+KCG IENAI VF  ++   +  WN +I GLA+H  G  A +L 
Sbjct: 361 GLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLF 420

Query: 438 MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
            +M+    +PD ITF G+L AC H GLV++G   F+ M   + + P+++HYGCMVD+L R
Sbjct: 421 FQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLAR 480

Query: 498 AGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557
           AG +E A   +  MP+E + VIW  LL ACR Y+N+ + E   + LI ++  N ++YV+L
Sbjct: 481 AGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVML 540

Query: 558 SNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           SN++   G W D  R++  M++   KKLPGCS IE+   V EF+  D+   Q+ +IY +L
Sbjct: 541 SNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVL 600

Query: 618 DNM 620
             +
Sbjct: 601 RGL 603


>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 719

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 232/613 (37%), Positives = 353/613 (57%), Gaps = 48/613 (7%)

Query: 24  CKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKD 83
           C +  + NQIH ++I +G ++      + V +  S P +   + A  +F       E+ D
Sbjct: 69  CGSTKEFNQIHTQLIVSGLLQQPLAAGRAVKTLCSFPDS--VQHAVSLFEGL----EEPD 122

Query: 84  PFLWNAIIKTYSHGLDPKEALVMFC-LMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
            F+ N I++TY +  DP  AL  +   M+   V+ + ++  L++K C  +G I +G +IH
Sbjct: 123 AFICNTIMRTYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIH 182

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
             + K  F  DLF++N LI +Y  CG                                I 
Sbjct: 183 ARILKFGFELDLFVRNSLIHMYSVCG-------------------------------RIG 211

Query: 203 SARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCV 261
            AR +F+   I +  L++WNS+++GY  +K+G +  A ++FE+MPERDL SWNSM+ G V
Sbjct: 212 DARAMFEVCSISD--LVTWNSMIDGY--VKNGEIGAARELFEEMPERDLFSWNSMIAGYV 267

Query: 262 KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
             G M  A+ LF+KMP RD+VSW  MIDGYA++  ++IA  LF+ MP R+VV+ N M+  
Sbjct: 268 GNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLAL 327

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ-FS 380
           YVR     + L +FD M  E    P++A+LV VL+A A LG +D+G  IH Y++ ++   
Sbjct: 328 YVRIKDYDECLRMFDKMMGETM--PNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIE 385

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
            +     AL+ MY+KCG+++ A  VF+++ + SV  WN+MI G  +HG  + A ++ ++M
Sbjct: 386 PDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDM 445

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500
           E+    P+D TF  +L+ACAH+G++ EG   F+LMRR +K+EP+++HYGCMVD+LGRAG 
Sbjct: 446 EKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGL 505

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560
           ++    LI  MPME    +W  LLSACR + N  + E VAK LI ++  +   Y+LLSN+
Sbjct: 506 MKDLEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNI 565

Query: 561 FAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +A  G W+D   VR MMKER L K  G SW+ +E    + FV   S  +   +Y +L +M
Sbjct: 566 YAAEGKWDDVEIVRKMMKERGLTKTTGFSWVHIEEFGTQSFVEKASVHRKSMMYSILSDM 625

Query: 621 WTPDSVATSCTHY 633
            T   +  SC  Y
Sbjct: 626 AT--QMKLSCGDY 636


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/602 (36%), Positives = 338/602 (56%), Gaps = 45/602 (7%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           +R CKT   V+QI A++I  GF  N ++T KLV     + C  L    + + +    F +
Sbjct: 108 MRSCKTSKQVHQIQAQIIANGFQYNEYITPKLV-----TICATL----KRMTYARQLFDQ 158

Query: 81  KKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
             DP   LWN++ + Y+     +E + +F  M    +  + F+  +VLK+C ++  + EG
Sbjct: 159 IPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEG 218

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
            Q+H  L K  F  + F+   LI +Y   G +  A ++F +M  R+ V++ SMI+GY+ S
Sbjct: 219 EQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILS 278

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLH 258
            ++ SAR LFD  P  ER+++ WN +++GY +    ++ A ++F +MP RD++ WN++L 
Sbjct: 279 ADLVSARRLFDLAP--ERDVVLWNIMVSGYIEGGDMVE-ARKLFXEMPNRDVMFWNTVLK 335

Query: 259 GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
           G    G ++  + LF++MP+R++ SW                               NA+
Sbjct: 336 GYATNGNVEALEGLFEEMPERNIFSW-------------------------------NAL 364

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
           +GGY  NG   + L  F  M  E  + P+DA+LV VLSA A+LG +D G  +H Y E   
Sbjct: 365 IGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSG 424

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
              N   G AL+DMY+KCG IENAI VF  ++   +  WN +I GLA+H  G  A +L  
Sbjct: 425 LKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFF 484

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
           +M+    +PD ITF G+L AC H GLV++G   F+ M   + + P+++HYGCMVD+L RA
Sbjct: 485 QMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARA 544

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           G +E A   +  MP+E + VIW  LL ACR Y+N+ + E   + LI ++  N ++YV+LS
Sbjct: 545 GRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLS 604

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           N++   G W D  R++  M++   KKLPGCS IE+   V EF+  D+   Q+ +IY +L 
Sbjct: 605 NIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLR 664

Query: 619 NM 620
            +
Sbjct: 665 GL 666


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/579 (36%), Positives = 323/579 (55%), Gaps = 70/579 (12%)

Query: 26  TLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPF 85
           ++++++Q HA ++ +G I +T   ++L+AS S++       +A  IF +        + +
Sbjct: 19  SISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRI----PNPNSY 74

Query: 86  LWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
           +WN II+ Y++   P+ AL +F  ML   V  DK++ +  LK+C     +EEG QIHG +
Sbjct: 75  MWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHV 134

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
            K   G DLF+QN LI L                               Y   G IE AR
Sbjct: 135 LKTGLGDDLFIQNTLIHL-------------------------------YASCGCIEDAR 163

Query: 206 ELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGK 265
            L D                                  +M ERD++SWN++L    + G 
Sbjct: 164 HLLD----------------------------------RMLERDVVSWNALLSAYAERGL 189

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
           M+ A  LFD+M +R+V SW  MI GY  +G ++ ARR+F E P ++VV+ NAM+ GY   
Sbjct: 190 MELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHA 249

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
           G   + L +F++MQ    + PD+ +LV VLSA A +G + +G  +H Y++K+  S++G  
Sbjct: 250 GRFSEVLVLFEDMQ-HAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFV 308

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
             AL+DMYSKCGSIE A++VF       +  WN++I+GL+ HG G+ A  +  EM     
Sbjct: 309 ATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGF 368

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR 505
           +P+++TF  +L+AC+ AGL+ EG   F LM  +H ++P ++HYGCMVD+LGR G +E A 
Sbjct: 369 KPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAE 428

Query: 506 NLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565
            L++ MP +   V+W +LL ACRN+ N+ + E VA+ L+ +    SSS+V LSNM+A +G
Sbjct: 429 ELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMG 488

Query: 566 MWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
            W D   VR  M+ + ++K PGCS IE++G V+EF   +
Sbjct: 489 RWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVYEFLAGE 527


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/600 (36%), Positives = 336/600 (56%), Gaps = 46/600 (7%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L KC   N + ++HA++I      + ++  KL+++FS             +    + F +
Sbjct: 30  LHKCTDFNHIKEVHAQIIKRNLHNDLYVAPKLISAFS---------LCHQMNLAVNVFNQ 80

Query: 81  KKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
            +DP   L+N +I+ +       +A   F  M  NG+  D F+   +LKAC+  G +   
Sbjct: 81  IQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTV 140

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
             IH  + K  F  DLF+ N LI  Y +CG L               V+Y          
Sbjct: 141 QMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLL--------------GVNY---------- 176

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSML 257
                A +LF  M + E++L+SWNS++ G   +K+G L  A ++F++M ERD +SWN++L
Sbjct: 177 -----AMKLF--MEMGEKDLVSWNSMIGGL--VKAGDLGRARKLFDEMAERDAVSWNTIL 227

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNA 317
            G VK G+M  A  LF+KMP+R+VVSW+ M+ GY K G +++AR LFD+MP +++V    
Sbjct: 228 DGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTI 287

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           ++ G+   G + +A  +++ M+    L PDD +L+ +L+A A+ G +  G  +H  ++K 
Sbjct: 288 IISGFAEKGLAKEATTLYNQMEAA-GLKPDDGTLISILAACAESGLLVLGKKVHASIKKI 346

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLL 437
           +   +     AL+DMY+KCG ++ A+ +F ++    +  WN M+ GLA+HG GE A  L 
Sbjct: 347 RIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLF 406

Query: 438 MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
            +M++   +PD +T   +L AC HAG V +GL  F  M R H + P ++HYGCM+D+LGR
Sbjct: 407 SKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGR 466

Query: 498 AGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557
            G +E A  L++ MPMEPNDVIW TLL ACR +  + + E V   LI ++ S+  +Y +L
Sbjct: 467 GGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLITLEQSDPGNYSML 526

Query: 558 SNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           SN+FA  G WN    +R  MK   ++K  G S IEL+  VHEF V DKS  +   IY +L
Sbjct: 527 SNIFAAAGDWNSVANMRLQMKSTGVQKPSGASSIELDDEVHEFTVFDKSHPETDKIYQIL 586


>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/610 (36%), Positives = 336/610 (55%), Gaps = 46/610 (7%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
           +  L  L KC  L+ VNQIHA+++     ++  +  KL+A+FS           R++   
Sbjct: 22  EEKLCDLHKCSNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFS---------LCRHLASA 72

Query: 75  YHAFREKKDP--FLWNAIIKTYSHGLD-PKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
            + F     P   L+N+II+ ++H    P      F  M  NG+  D F+   +LKAC+ 
Sbjct: 73  VNVFNHVPHPNVHLYNSIIRAHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTG 132

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
              +     IH  + K  F  D+F+ N LI  Y RCG                       
Sbjct: 133 PSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCG----------------------- 169

Query: 192 IDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI 251
                 S  ++ A  LF +M  +ER++++WNS++ G  +    L+ A ++F++MPERD++
Sbjct: 170 ------SAGLDGAMSLFLAM--KERDVVTWNSMIGGLVRCGE-LEGACKLFDEMPERDMV 220

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           SWN+ML G  K G+MD A  LF++MP+R++VSW+ M+ GY+K G +D+AR LFD  P ++
Sbjct: 221 SWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKN 280

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           VV    ++ GY   G+  +A E++  M+ E  L PDD  L+ +L+A A+ G +  G  IH
Sbjct: 281 VVLWTTIIAGYAEKGFVREATELYGKME-EAGLRPDDGFLISILAACAESGMLGLGKRIH 339

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFE-QIEDGSVDHWNAMINGLAIHGLG 430
             + + +F    K   A IDMY+KCG ++ A  VF   +    V  WN+MI G A+HG G
Sbjct: 340 ASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHG 399

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
           E A +L   M     EPD  TF GLL AC HAGLV EG   F  M +++ + P+++HYGC
Sbjct: 400 EKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGC 459

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           M+D+LGR GH++ A  L+  MPMEPN +I  TLL+ACR + +++    V + L  ++ ++
Sbjct: 460 MMDLLGRGGHLKEAFTLLRSMPMEPNAIILGTLLNACRMHNDVDFARAVCEQLFKVEPTD 519

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQV 610
             +Y LLSN++A  G W +   VR  M     +K  G S IE+E  VHEF V D+S  + 
Sbjct: 520 PGNYSLLSNIYAQAGDWMNVANVRLQMMNTGGQKPSGASSIEVEEEVHEFTVFDQSHPKS 579

Query: 611 RDIYYMLDNM 620
            DIY M+D +
Sbjct: 580 DDIYKMIDRL 589


>gi|356564579|ref|XP_003550529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Glycine max]
          Length = 576

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/574 (36%), Positives = 340/574 (59%), Gaps = 12/574 (2%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           + L++KC T+    QIHA ++  GF   T L   L+        T     A Y +   H 
Sbjct: 7   ITLMKKCSTVKQAKQIHAHILINGF---TFLRPLLIHRMLLWDVTNYRTMANYAYSMLHH 63

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
                D F W  +I+ +S      EA+ ++  M    +     + S  LK+C+R+  +  
Sbjct: 64  L-HIPDSFSWGCVIRFFSQKCLFTEAVSLYVQMHRTSLCPTSHAVSSALKSCARIHDMLC 122

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G+ IHG +    F + +++Q  L+ LY + G +  AR++FD+M  +  VS+NS++ GYVK
Sbjct: 123 GMSIHGQVHVFGFNTCVYVQTALLDLYSKIGDMGTARKVFDEMANKSVVSWNSLLSGYVK 182

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
           +GN++ A+ LF  +P   +++ISWNS+++GYA+  +  Q A  +F++MPER+L SWN+M+
Sbjct: 183 AGNLDEAQYLFSEIP--GKDVISWNSMISGYAKAGNVGQ-ACTLFQRMPERNLSSWNAMI 239

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNA 317
            G + CG +  A+  FD MP+R+ VSW  MI GY+K G VD AR+LFD+M  +D+++ NA
Sbjct: 240 AGFIDCGSLVSAREFFDTMPRRNCVSWITMIAGYSKGGDVDSARKLFDQMDHKDLLSYNA 299

Query: 318 MMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
           M+  Y +N    +ALE+F++M + ++Y+HPD  +L  V+SA +QLG ++    I  ++  
Sbjct: 300 MIACYAQNSKPKEALELFNDMLKQDIYVHPDKMTLASVISACSQLGDLEHWWWIESHMND 359

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
               L+     ALID+Y+KCGSI+ A ++F  +    +  ++AMI G  I+G    A  L
Sbjct: 360 FGIVLDDHLATALIDLYAKCGSIDKAYELFHNLRKRDLVAYSAMIYGCGINGKASDAIKL 419

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
             +M    I P+ +T+TGLL A  HAGLV++G  CF  M+  + L P + HYG MVD+ G
Sbjct: 420 FEQMLAECIGPNLVTYTGLLTAYNHAGLVEKGYQCFNSMKD-YGLVPSIDHYGIMVDLFG 478

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556
           RAG+++ A  LI +MPM+PN  +W  LL ACR + N+ +GE   +H I +++  +    L
Sbjct: 479 RAGYLDEAYKLILNMPMQPNAGVWGALLLACRLHNNVELGEIAVQHCIKLETDTTGYCSL 538

Query: 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSW 590
           LS+++A +  W+DA+++R  M+    K   GCSW
Sbjct: 539 LSSIYATVEKWDDAKKLRKGMEG---KDFTGCSW 569


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/612 (36%), Positives = 351/612 (57%), Gaps = 16/612 (2%)

Query: 17  TLLLLRKCKTLNDVNQIHARMITTGFIKNTH---LTTKLVASFSSS--PCTPLTEFARYI 71
            +L  R   +   + Q+HA ++T G + +     L ++LV + + S  P          +
Sbjct: 11  AILSTRHPPSAGRLLQLHAHLLTAGLMSSRSPFPLASRLVEALAHSDDPRHSPRPLLHAL 70

Query: 72  FFKYHAFREKKDPFLWNAIIKTYSHGLDP---KEALVMFCLMLDNGVSVDKFSASLVLKA 128
                          +NA ++  S   D       L ++C +L +    D  +   +LKA
Sbjct: 71  ALLASLPTPPDSASPYNAALRALSLCTDRGLVTRCLPLYCSLLRSA-RPDHLTFPFLLKA 129

Query: 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY 188
           C+RL     G  + G +  + F +D+F+ N  +     C  +  AR+LFD   +RD VS+
Sbjct: 130 CARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSW 189

Query: 189 NSMIDGYVKSGNIESARELFDSM---PIRERNLISWNSVLNGYAQLKS---GLQFAWQIF 242
           N++I GYV+ G    A E+F  M        + ++   V++G AQL+    G +    + 
Sbjct: 190 NTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVE 249

Query: 243 EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
                  +   N ++   +KCG ++ A+++F+ + K+ +VSW  MI GYA+ G +D AR+
Sbjct: 250 SHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARK 309

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           +FDEMP+RDV   NA+M GYV+     +AL +F +MQ E  + PDD ++V +LSA +QLG
Sbjct: 310 VFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQ-EAMVEPDDITMVNLLSACSQLG 368

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
            ++ G+ +H Y+++ + SL+   G  L+DMYSKCG+IE AI+VF++I + +   W AMI+
Sbjct: 369 ALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMIS 428

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
           GLA HG  ++A      M  L ++PD+ITF G+L+AC HAGLVKEG   F LM   + LE
Sbjct: 429 GLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLE 488

Query: 483 PELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKH 542
            +++HY CMVD+LGRAG+++ A +L+  MPMEP+ V+W  L  ACR + N+ +GE  A  
Sbjct: 489 RKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGALFFACRMHGNITLGEKAAMK 548

Query: 543 LIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
           L+ +D  +S  YVLL+NM+A   M   A +VR MM+   ++K+PGCS IEL GVVHEF V
Sbjct: 549 LVELDPGDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIV 608

Query: 603 RDKSRLQVRDIY 614
           +DKS   +  IY
Sbjct: 609 KDKSHTDIAAIY 620


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 228/608 (37%), Positives = 360/608 (59%), Gaps = 36/608 (5%)

Query: 32  QIHARMITTGFIKNTHLTT----KLVASFS-SSPCTPLTEFARYIFFKYHAFREKKDP-- 84
           ++HA  + +G + ++H T+    +LVA+F+ S P +P     R +            P  
Sbjct: 26  KLHAHHLVSGLL-SSHSTSPFIDRLVAAFAHSDPASP-----RPLLHALAILASLPSPPD 79

Query: 85  --FLWNAIIKTYSHGLDPKEALV------MFCLMLDNGVS-VDKFSASLVLKACSRLGLI 135
             F +NA  +  S  L P + LV      ++  +L +G +  D  +   ++KAC+RL   
Sbjct: 80  SAFPYNAAFRALS--LCPHQHLVDRHCLPLYRALLHSGSARPDHLTFPFLIKACARLQYR 137

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
             G  + G ++K+ F +D+F+ N  +  +   G + FAR+LFD+  +RD VS+N++I GY
Sbjct: 138 SYGAAVLGHVQKLGFSADVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGY 197

Query: 196 VKSGNIESARELF-----DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL 250
           V+SG    A ELF     D   +R   +    +V +G AQ+   L+   ++ E +  + +
Sbjct: 198 VRSGLPREALELFWRLAEDGNAVRPDEVTVIGAV-SGCAQM-GDLELGKRLHEFVDNKGV 255

Query: 251 IS----WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
                  N+++   VKCG ++ A ++F+++  R  VSW  MI G+A+LG ++ AR LFDE
Sbjct: 256 RCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDE 315

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           MP+RDV   NA+M GYV+N    +A+ +F  MQ +  + P++ ++V +LSA +QLG ++ 
Sbjct: 316 MPERDVFPWNALMAGYVQNKQGKEAIALFHEMQ-KSKVDPNEITMVNLLSACSQLGALEM 374

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G+ +H Y+++ +  L+   G +L+DMY+KCG+I+ AI VF +I   +   W +MI GLA 
Sbjct: 375 GMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLAN 434

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           HG  + A +    M  L ++PD+ITF G+L+AC HAGLV+ G   F LM   + LE +++
Sbjct: 435 HGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMK 494

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HY CM+D+LGRAGH++ A  L+  MPM+P+ V+W  L  ACR + N+ +GE  A  L+ +
Sbjct: 495 HYSCMIDLLGRAGHLDEAEQLVNAMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVEL 554

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           D S+S  YVLL+NM+A   M   A +VR MM+   ++K+PGCS IEL GVVHEF V+DKS
Sbjct: 555 DPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKS 614

Query: 607 RLQVRDIY 614
            L    IY
Sbjct: 615 HLDTNAIY 622



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 125/488 (25%), Positives = 227/488 (46%), Gaps = 66/488 (13%)

Query: 67  FARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV--DKFSASL 124
           FAR +F +       +D   WN +I  Y     P+EAL +F  + ++G +V  D+ +   
Sbjct: 174 FARRLFDE----SPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIG 229

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
            +  C+++G +E G ++H  +        + L N ++ +YV+CG LE A  +F+++  R 
Sbjct: 230 AVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRT 289

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244
           +VS+ +MI G+ + G +E AR LFD MP  ER++  WN+++ GY Q K G + A  +F +
Sbjct: 290 AVSWTTMIVGHARLGMMEDARMLFDEMP--ERDVFPWNALMAGYVQNKQGKE-AIALFHE 346

Query: 245 MPERDL----ISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGR 296
           M +  +    I+  ++L  C + G ++    +   + +      V    +++D YAK G 
Sbjct: 347 MQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGN 406

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           +  A  +F+E+P ++ +   +M+ G   +G++ +A+E F  M  +L L PD+ + + VLS
Sbjct: 407 IKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRM-IDLGLQPDEITFIGVLS 465

Query: 357 AIAQLGHIDKGVAIHRYLE-KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSV 414
           A    G ++ G      +  K       KH   +ID+  + G ++ A ++   +  D   
Sbjct: 466 ACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMDPDA 525

Query: 415 DHWNAMINGLAIHG---LGELAFDLLMEMERLSIEPDDITFTGLL-NACAHAGLVKE--- 467
             W A+     +HG   LGE A      M+ + ++P D     LL N  A A + K+   
Sbjct: 526 VVWGALFFACRMHGNITLGEKA-----AMKLVELDPSDSGIYVLLANMYAEANMRKKADK 580

Query: 468 --------------GLLCFELMRRIHK--------------------LEPELQHYGCMVD 493
                         G  C EL   +H+                    +  +++H   ++D
Sbjct: 581 VRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHLDTNAIYDCLHEITLQMRHIANLID 640

Query: 494 ILGRAGHI 501
           I     HI
Sbjct: 641 ISESGSHI 648


>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/583 (36%), Positives = 334/583 (57%), Gaps = 47/583 (8%)

Query: 12  NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
           ++T S   LL+ C T + + Q+HAR+I  G  ++  + ++ +     + C  L+ F+   
Sbjct: 23  DTTSSISTLLKACTTTSTLEQVHARIIRKGLHQDHFIISQFL-----TLCNSLSNFS--- 74

Query: 72  FFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKAC 129
            +    F     P   LWN  IK YS        + +F  M  +    DKF+   ++KAC
Sbjct: 75  -YTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKAC 133

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
           S++  ++EG+  HG   +   G D+F+   LI LY +C                      
Sbjct: 134 SKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKC---------------------- 171

Query: 190 SMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERD 249
                    G I  AR++FD M   ERN++SW +++ GYA   S L  A ++F++MPE++
Sbjct: 172 ---------GEILCARKVFDEMG--ERNVVSWTAMIAGYASF-SDLVEARKLFDEMPEKN 219

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
            +SWN+++ G VKCG +  A+ +FD+MP R+VVS+  MIDGYAK G +  AR +F+E P+
Sbjct: 220 AVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPE 279

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           RDVVA +A++ GYV+NG   +A++IF  M C   + PD+  +V ++SA +Q+G ++    
Sbjct: 280 RDVVAWSALISGYVQNGQPNEAVKIFLEM-CSRNVKPDEFIMVSLMSACSQMGSLELAKW 338

Query: 370 IHRYLEKDQFSLNGKHGVA-LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
           +  Y+ K    ++  H +A LIDM +KCGS++ A K+FE++    +  + +M+ GL+IHG
Sbjct: 339 VDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHG 398

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
            G  A  L   M    + PDD+ FT +L AC+ AGLV EG   FE M+  + + P   HY
Sbjct: 399 CGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHY 458

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
            CMVD+LGRAG ++ A  L++ MP+EP+   W  LL AC+ + ++ +GE VA  L  ++ 
Sbjct: 459 ACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEP 518

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
            N+ +YVLLSN++A    W D   +R+ M+ER ++K+PGCSWI
Sbjct: 519 QNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 561


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 234/713 (32%), Positives = 371/713 (52%), Gaps = 95/713 (13%)

Query: 2   FVSANYNQPCNSTQSTLLL------LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVAS 55
           ++S  +  P  + + TL L      L+KC+ +   NQI ++MI +GF K++   ++L+  
Sbjct: 8   YLSKPFKIPTFTLKPTLTLPILETHLQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKF 67

Query: 56  FSSSPCTPLTEFARYIFFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDN 113
            +  P   + +        Y  F   ++P  F+ N ++K Y     P +A+ ++  ML++
Sbjct: 68  STELPFININQ-------SYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLES 120

Query: 114 GVSVDKFSASLVLKACS-RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF 172
            V+ D ++  ++ ++CS RL   + G  I   + KV F SD+++QN LI++Y  CG L  
Sbjct: 121 NVAADNYTYPILFQSCSIRLAEFD-GKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSD 179

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP-------------------- 212
           AR++FD   + D VS+NSM+ GYV  GN+E A++++D MP                    
Sbjct: 180 ARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNV 239

Query: 213 ---------IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLIS----------- 252
                    +++++L+SW+++++ Y Q     + A  +F++M    ++            
Sbjct: 240 EEACKLFNEMKQKDLVSWSALISCYEQ-NEMYEEALILFKEMNANGIMVDEVVVLSVLSA 298

Query: 253 ----------------------------WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSW 284
                                        N+++H    C ++  AQ LF +    D +SW
Sbjct: 299 CSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISW 358

Query: 285 ANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYL 344
            +MI GY K G ++ AR LFD MP +D V+ +AM+ GY +     + L +F  MQ E   
Sbjct: 359 NSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIE-GT 417

Query: 345 HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIK 404
            PD+  LV V+SA   L  +D+G  IH Y+ K+   +N   G  LI+MY K G +E+A++
Sbjct: 418 KPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALE 477

Query: 405 VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL 464
           VF+ +E+  V  WNA+I GLA++GL + +     EM+   + P++ITF  +L AC H GL
Sbjct: 478 VFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGL 537

Query: 465 VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
           V EG   F  M + HK+ P ++HYGCMVD+LGRAG ++ A  LIE MPM P+   W  LL
Sbjct: 538 VDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALL 597

Query: 525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKK 584
            AC+ Y +   GE + + L+ +   +    VLLSN++A  G W D   VR MM++  + K
Sbjct: 598 GACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVK 657

Query: 585 LPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM--------WTPDSVATS 629
            PGCS IE  G VHEF   DK+  Q   I +MLD M        + PD+   S
Sbjct: 658 TPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLEGYAPDTREVS 710


>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 226/610 (37%), Positives = 340/610 (55%), Gaps = 46/610 (7%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
           +  L  L KC  L+ VNQIHA+++     ++  +  KL+A+FS           R++   
Sbjct: 22  EEKLCDLHKCTNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFS---------LCRHLASA 72

Query: 75  YHAFREKKDP--FLWNAIIKTYSHGLDPKE-ALVMFCLMLDNGVSVDKFSASLVLKACSR 131
            + F     P   L+N+II+ ++H    +      F  M  NG+  D F+   +LKACS 
Sbjct: 73  VNVFNHVPHPNVHLYNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSG 132

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
              +     IH  + K+ F  D+F+ N LI  Y RCG                    N+ 
Sbjct: 133 PSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCG--------------------NAG 172

Query: 192 IDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI 251
           +DG         A  LF +M   ER++++WNS++ G  +    LQ A ++F++MP+RD++
Sbjct: 173 LDG---------AMSLFLAM--EERDVVTWNSMIGGLVRCGE-LQGACKLFDEMPDRDMV 220

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           SWN+ML G  K G+MD A  LF++MP R++VSW+ M+ GY+K G +D+AR LFD  P ++
Sbjct: 221 SWNTMLDGYAKAGEMDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKN 280

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           VV    ++ GY   G + +A E++  M+ E  + PDD  L+ +L+A A+ G +  G  IH
Sbjct: 281 VVLWTTIIAGYAEKGLAREATELYGKME-EAGMRPDDGFLLSILAACAESGMLGLGKRIH 339

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFE-QIEDGSVDHWNAMINGLAIHGLG 430
             + + +F    K   A IDMY+KCG ++ A  VF   +    V  WN+MI G A+HG G
Sbjct: 340 ASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHG 399

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
           E A +L   M +   EPD  TF GLL AC HAGLV EG   F  M +++ + P+++HYGC
Sbjct: 400 EKALELFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGC 459

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           M+D+LGR GH++ A  L+  MPMEPN +I  TLL+ACR + ++++   V + L  ++ S+
Sbjct: 460 MMDLLGRGGHLKEAFMLLRSMPMEPNAIILGTLLNACRMHNDVDLARAVCEQLFKLEPSD 519

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQV 610
             +Y LLSN++A  G W +   VR  MK    +K  G S IE+E  VHEF V D+S  + 
Sbjct: 520 PGNYSLLSNIYAQAGDWMNVANVRLQMKNTGGEKPSGASSIEVEEEVHEFTVFDQSHPKS 579

Query: 611 RDIYYMLDNM 620
            DIY M+D +
Sbjct: 580 DDIYQMIDRL 589


>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
           small; Tetratricopeptide-like helical [Medicago
           truncatula]
          Length = 971

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 219/592 (36%), Positives = 341/592 (57%), Gaps = 14/592 (2%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           L +L +CK+L  + QI A+M++TG I+N    ++LVA  + S    L    R ++     
Sbjct: 61  LSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILY----- 115

Query: 78  FREKK-DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG-VSVDKFSASLVLKACSRLGLI 135
            R K+ + F WNA I+ Y    D +   +++  ML  G +  D  +  L+LK C      
Sbjct: 116 -RIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSS 174

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
             GL + G + K  F  D+F+ N  I++ + CG L  A  +F+K  +RD V++NSMI G 
Sbjct: 175 CLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGC 234

Query: 196 VKSGNIESARELFDSMPIR-----ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL 250
           VK G    A +++  M        E  +I   S  +    L  G +F   I E   E  +
Sbjct: 235 VKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTI 294

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
              N+++   VKCG++  A+ LFD M ++ +VSW  M+ GYA+ G +D+AR +  ++P++
Sbjct: 295 PLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEK 354

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
            VV  NA++ G V+     +AL +F  MQ    + PD  ++V  LSA +QLG +D G+ I
Sbjct: 355 SVVPWNAIISGCVQAKQGKEALALFHEMQIRT-IEPDKVTMVNCLSACSQLGALDVGIWI 413

Query: 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
           H Y+E+ + S++   G AL+DMY+KCG+I  A++VFE+I   +   W A+I GLA+HG  
Sbjct: 414 HHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNA 473

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
           + A     +M  + I PD+ITF G+L+AC H GLV+EG   F  M     + P+L+HY C
Sbjct: 474 QDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSC 533

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           MVD+LGRAGH+E A  L+++MPM  +  +   L  ACR Y N+ +GE  A  L+ +D  +
Sbjct: 534 MVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQD 593

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
           S +YVLL++M++   MW +AR  R +M ++ ++K PGCS +E+ G+VHEF +
Sbjct: 594 SGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEINGIVHEFVL 645


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/605 (36%), Positives = 337/605 (55%), Gaps = 73/605 (12%)

Query: 19  LLLRKCKT-LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           LL  +C T L+ + Q HA ++ TG ++++++   LV S+++        F   +  +   
Sbjct: 38  LLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSL--RVFD 95

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
           F  K + FLWN +IK      +P +A++++  M+      +K++   VLKACS  G++ E
Sbjct: 96  FVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAE 155

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G+Q+H  L K   G D              G++                  +S I  Y  
Sbjct: 156 GVQVHAHLVKHGLGGD--------------GHI-----------------LSSAIRMYAS 184

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
            G +  AR + D                                 +K  E D + WN+M+
Sbjct: 185 FGRLVEARRILD---------------------------------DKGGEVDAVCWNAMI 211

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVVS-WANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
            G ++ G+++ A+ LF+ MP R ++S W  MI G+++ G V++AR  FDEM +RD ++ +
Sbjct: 212 DGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWS 271

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
           AM+ GY++ G  M+ALEIF  MQ E  + P    L  VLSA A LG +D+G  IH Y ++
Sbjct: 272 AMIDGYIQEGCFMEALEIFHQMQKE-KIRPRKFVLPSVLSACANLGALDQGRWIHTYAKR 330

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
           +   L+G  G +L+DMY+KCG I+ A +VFE++ +  V  WNAMI GLA+HG  E A DL
Sbjct: 331 NSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDL 390

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
             +M+   I P++ITF G+LNACAH GLV++GL  F  MR+ + +EP+++HYGC+VD+LG
Sbjct: 391 FSKMD---INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLG 447

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556
           RAG +  A  ++  +P EP   +W  LL ACR + N+ +GE V K L+ ++  NS  Y L
Sbjct: 448 RAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTL 507

Query: 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL-EGVVHEFFVRDKSRLQVRDIYY 615
           LSN++A  G W +   VR +MKER +K  PG S I+L  G VH+F + D S  QV+DIY 
Sbjct: 508 LSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQ 567

Query: 616 MLDNM 620
           MLD +
Sbjct: 568 MLDKV 572


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/605 (36%), Positives = 337/605 (55%), Gaps = 73/605 (12%)

Query: 19  LLLRKCKT-LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           LL  +C T L+ + Q HA ++ TG ++++++   LV S+++        F   +  +   
Sbjct: 39  LLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSL--RVFD 96

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
           F  K + FLWN +IK      +P +A++++  M+      +K++   VLKACS  G++ E
Sbjct: 97  FVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAE 156

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G+Q+H  L K   G D              G++                  +S I  Y  
Sbjct: 157 GVQVHAHLVKHGLGGD--------------GHI-----------------LSSAIRMYAS 185

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
            G +  AR + D                                 +K  E D + WN+M+
Sbjct: 186 FGRLVEARRILD---------------------------------DKGGEVDAVCWNAMI 212

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVVS-WANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
            G ++ G+++ A+ LF+ MP R ++S W  MI G+++ G V++AR  FDEM +RD ++ +
Sbjct: 213 DGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWS 272

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
           AM+ GY++ G  M+ALEIF  MQ E  + P    L  VLSA A LG +D+G  IH Y ++
Sbjct: 273 AMIDGYIQEGCFMEALEIFHQMQKE-KIRPRKFVLPSVLSACANLGALDQGRWIHTYAKR 331

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
           +   L+G  G +L+DMY+KCG I+ A +VFE++ +  V  WNAMI GLA+HG  E A DL
Sbjct: 332 NSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDL 391

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
             +M+   I P++ITF G+LNACAH GLV++GL  F  MR+ + +EP+++HYGC+VD+LG
Sbjct: 392 FSKMD---IYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLG 448

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556
           RAG +  A  ++  +P EP   +W  LL ACR + N+ +GE V K L+ ++  NS  Y L
Sbjct: 449 RAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTL 508

Query: 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL-EGVVHEFFVRDKSRLQVRDIYY 615
           LSN++A  G W +   VR +MKER +K  PG S I+L  G VH+F + D S  QV+DIY 
Sbjct: 509 LSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQ 568

Query: 616 MLDNM 620
           MLD +
Sbjct: 569 MLDKV 573


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 229/643 (35%), Positives = 359/643 (55%), Gaps = 79/643 (12%)

Query: 17  TLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L LL KC+++    QIHA +I TG        +KL+  FS+   +    +A  +F    
Sbjct: 32  SLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLI-EFSAVSRSGDISYAISLFNSI- 89

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
              E+ + F+WN++I+  S  L P  ALV F  M+ +GV  + ++   +LK+C++L    
Sbjct: 90  ---EEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAH 146

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           EG QIH  + K+ F SD+F+                               + S+I+ Y 
Sbjct: 147 EGKQIHAHVLKLGFVSDVFI-------------------------------HTSLINMYA 175

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
           +SG + +A+ +FD    R+   IS+ +++ GYA L   +  A Q+F++MP +D++SWN+M
Sbjct: 176 QSGEMNNAQLVFDQSNFRDA--ISFTALIAGYA-LWGYMDRARQLFDEMPVKDVVSWNAM 232

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVV--------------------------SWAN---- 286
           + G  + G+  +A  LF+ M K +V                           SW      
Sbjct: 233 IAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGL 292

Query: 287 ---------MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
                    +ID Y+K G +  AR LFD+M +RDV++ N M+GGY       +AL +F  
Sbjct: 293 CSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFRE 352

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
           M     + P + + + +L + A LG ID G  IH Y+ K+  S++     +LID+Y+KCG
Sbjct: 353 MLAS-GVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCG 411

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
           +I  A +VF+ ++  S+  WNAMI GLA+HG  + AF+L  +M    IEP++ITF G+L+
Sbjct: 412 NIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILS 471

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
           AC HAGLV  G   F  M + +K+ P+ QHYGCM+D+LGRAG  E A +L+++M ++P+ 
Sbjct: 472 ACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDG 531

Query: 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
            IW +LL ACR++  + +GE VA+ L  ++  N  +YVLLSN++AG G W+D  R+R+ +
Sbjct: 532 AIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRL 591

Query: 578 KERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            +R +KK+PGC+ IE++ VVHEF V DK   Q  DIY ML+ +
Sbjct: 592 NDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEV 634


>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
 gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
          Length = 590

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 227/616 (36%), Positives = 343/616 (55%), Gaps = 41/616 (6%)

Query: 10  PCNSTQSTLLL--LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF 67
           PC +     LL  LR C++ +   Q HA ++T+G +  + L    +   + +        
Sbjct: 4   PCPAVALPTLLSRLRACRSASHAIQCHALLLTSGHLAASPLRLSNLLLLAIASVPGAAPL 63

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           A  +F +       +DPF WN  I+ ++ G  P+ AL+ F  M   GV  D ++   VLK
Sbjct: 64  ADAVFARLPE-PAARDPFPWNTAIRLHAPG-RPRAALLYFARMRSCGVRPDAYTFPAVLK 121

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           AC        GL +H    +   G+DLF  N LIS Y R               I D +S
Sbjct: 122 ACGCAPGCRAGLLVHAEAVRRGLGADLFTVNALISFYCR---------------ILDCIS 166

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
                            R++FD      R+L+SWNS++ GY      +  A ++F++MP+
Sbjct: 167 ----------------GRKVFDEAGGVSRDLVSWNSMVAGYVGCGE-MGLAQELFDEMPQ 209

Query: 248 RDLISWNSMLHGCVKCGK--MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFD 305
           RD  SW +++ G  K G   +D A+ LFD+M +RD+V W +MIDGYA+ GR+D AR LF+
Sbjct: 210 RDAFSWGALIDGYGKQGGAGVDRARELFDQMTERDLVCWNSMIDGYARHGRMDEARSLFE 269

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHI 364
           EMP+R+V++ + ++ G+VR G + +ALE F +M +C +   PD  + V  +SA AQLG +
Sbjct: 270 EMPERNVISWSIVIDGHVRCGEAKEALEHFQSMLRCGI--RPDRVAAVGAVSACAQLGAL 327

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
           ++G  +H YLEK +   +     ALIDMY KCG ++ A+ +FE + + SV  WN MI GL
Sbjct: 328 EQGRWLHSYLEKKKVLSDVVVQTALIDMYMKCGRMDLAMLIFESMPERSVVTWNVMIVGL 387

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
             HG G  A  L   ME   +  DD++   +L AC HAGLV EGL  F  M++   ++P+
Sbjct: 388 GTHGYGLDAVMLFHRMEAERVAVDDLSLLAMLTACTHAGLVSEGLEIFHRMKKDFGIDPK 447

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
           ++HYG +VD+LGRAG ++ AR+ IE MPMEP   +W +LL+ACR++  + + E   + L 
Sbjct: 448 VEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELWGSLLAACRSHSCVELAELSVERLA 507

Query: 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
            + + +S  YVLLSN++A  GMW D  R+R +M +  ++K  G S IE++G +HEF    
Sbjct: 508 NLGADDSGVYVLLSNIYADEGMWGDVLRIRKLMSDEGMRKDIGRSVIEVDGEIHEFVNGG 567

Query: 605 KSRLQVRDIYYMLDNM 620
            S L   +IY ML N+
Sbjct: 568 GSHLCTDEIYLMLWNL 583


>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
 gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/608 (35%), Positives = 338/608 (55%), Gaps = 48/608 (7%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L KC  LN V Q+HA++I     ++ H+  KL+++ S           R        F +
Sbjct: 26  LPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALS---------LCRQTNLAVRVFNQ 76

Query: 81  KKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
            ++P   L N++I+ ++    P +A  +F  M   G+  D F+   +LKACS    +   
Sbjct: 77  VQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVV 136

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
             +H  + K+   SD+++ N LI  Y RCG L          G+RD              
Sbjct: 137 KMMHNHIEKLGLSSDIYVPNALIDCYSRCGGL----------GVRD-------------- 172

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSML 257
                A +LF+ M   ER+ +SWNS+L G   +K+G L+ A ++F++MP+RDLISWN+ML
Sbjct: 173 -----AMKLFEKM--SERDTVSWNSMLGGL--VKAGELRDARRLFDEMPQRDLISWNTML 223

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP--KRDVVAC 315
            G  +C +M  A  LF+KMP+R+ VSW+ M+ GY+K G +++AR +FD+MP   ++VV  
Sbjct: 224 DGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTW 283

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
             ++ GY   G   +A  + D M     L  D A+++ +L+A  + G +  G+ IH  L+
Sbjct: 284 TIIIAGYAEKGLLKEADRLVDQMVAS-GLKFDAAAVISILAACTESGLLSLGMRIHSILK 342

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           +     N     AL+DMY+KCG+++ A  VF  I    +  WN M++GL +HG G+ A +
Sbjct: 343 RSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIE 402

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           L   M R  I PD +TF  +L +C HAGL+ EG+  F  M +++ L P+++HYGC+VD+L
Sbjct: 403 LFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLL 462

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           GR G ++ A  +++ MPMEPN VIW  LL ACR +  +++ + V  +L+ +D  +  +Y 
Sbjct: 463 GRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYS 522

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY 615
           LLSN++A    W     +RS MK   ++K  G S +ELE  +HEF V DKS  +   IY 
Sbjct: 523 LLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQ 582

Query: 616 MLDNMWTP 623
           ML ++  P
Sbjct: 583 MLGSLIEP 590


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 224/619 (36%), Positives = 347/619 (56%), Gaps = 52/619 (8%)

Query: 16  STLLLLRKCKTLNDVNQIHARMITTGFIKNTHLT--TKLVASFSSS-PCTPLTEFARYIF 72
           S L  L+ CK++  + QIHA +I T    +  LT  T+L A  + S P  P     RY  
Sbjct: 24  SFLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDP-----RYAL 78

Query: 73  FKYHAFREKKDPFLWNAIIKTY-SHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
                 R    P L+NAII+   +   D  E LV++  ML  G+  D ++   VLKAC+ 
Sbjct: 79  SLLAQLRTPNLP-LYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAE 137

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
              + EG ++HG   K+   SD+++ N L+ +Y  C                        
Sbjct: 138 SRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDV---------------------- 175

Query: 192 IDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQL---KSGLQFAWQIFEKMPER 248
                    I SAR++FD+ P  +R+L+SW +++ GY ++   + G+   +++  +  + 
Sbjct: 176 ---------IRSARKVFDTSP--QRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQA 224

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKR-----DVVSWANMIDGYAKLGRVDIARRL 303
           D ++   +L  C + G +   + L   + +      DV     ++D Y K G  + AR++
Sbjct: 225 DGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKV 284

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           F EMP ++VV+ N+M+ G  + G   ++L +F  MQ  L + PDD +LV VL++ A LG 
Sbjct: 285 FQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQ-RLGVKPDDVTLVAVLNSCANLGV 343

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           ++ G  +H YL+++Q   +G  G AL+DMY+KCGSI+ A  VF+ +    V  + AMI G
Sbjct: 344 LELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVG 403

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
           LA+HG G  A DL  EM ++ IEPD++TF G+L AC+H GLV+EG   FE M  I+ L P
Sbjct: 404 LAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRP 463

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
           +L+HYGCMVD+LGRAG I  A   I +MP+EP+  +   LL AC+ +  + +GE V K +
Sbjct: 464 QLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKI 523

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVR 603
             ++     +YVL+SN+++    W DA ++R  MKERNL+K PGCS IEL+GV+HEF   
Sbjct: 524 EKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKG 583

Query: 604 DKSRLQVRDIYYMLDNMWT 622
           DKS  ++++IY +LD + +
Sbjct: 584 DKSHPKIKEIYKLLDEIMS 602


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 221/598 (36%), Positives = 339/598 (56%), Gaps = 19/598 (3%)

Query: 34  HARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKT 93
           HA+M+ TG     +  +KL+     SP      +A  +F       ++ +  +WN +++ 
Sbjct: 2   HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVF----ETXQEPNLLIWNTMLRG 57

Query: 94  YSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSD 153
            +   D    L M+  M+  G   + ++   +LK+C++    EEG QIH  + K+    D
Sbjct: 58  LASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELD 117

Query: 154 LFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPI 213
            +    LIS+Y R G LE AR++FD    RD VS  ++I GY   G++ SAR++FD   I
Sbjct: 118 RYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDX--I 175

Query: 214 RERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER----DLISWNSMLHGCVKCGKMDDA 269
            ER+++SWN+++ GY +   G + A ++F++M       D  +  S+L  C + G ++  
Sbjct: 176 TERDVVSWNAMITGYVE-NCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELG 234

Query: 270 QALF----DKMPKRDVVSWANMIDG-YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVR 324
           + +     D       +   N   G Y+K G V+IA  LF+ +  +DVV+ N ++GGY  
Sbjct: 235 REIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTH 294

Query: 325 NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK 384
                +AL +F  M       P+D +++ VL A A LG ID G  IH Y++K    +   
Sbjct: 295 MNLYKEALLLFQEM-LRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNG 353

Query: 385 HGV--ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMER 442
             +  +LIDMY+KCG IE A +VF  +   S+  WNAMI G A+HG    AFDL   M +
Sbjct: 354 SALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRK 413

Query: 443 LSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIE 502
             IEPDDIT  GLL+AC+H+GL+  G   F+ + + + + P+L+HYGCM+D+LG AG  +
Sbjct: 414 NGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFK 473

Query: 503 AARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA 562
            A  +I  MPMEP+ VIW +LL AC+ + NL + E  A+ L+ ++  NS SYVLLSN++A
Sbjct: 474 EAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYA 533

Query: 563 GLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
             G W D  R+R ++  + +KK+PGCS IE++ VVHEF + DK   Q R+IY ML+ M
Sbjct: 534 TAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEM 591


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 229/611 (37%), Positives = 352/611 (57%), Gaps = 40/611 (6%)

Query: 32  QIHARMITTGFIKN---------THLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKK 82
           QIHA ++  G +++            TT       +SP +PL    R+      A     
Sbjct: 28  QIHAHLLAAGLLQDFSSLLAAAYALSTTATATDARTSPPSPL----RHAL----ALLSSL 79

Query: 83  DPFLWNAIIKTYS---------HGLDPKEALVMFCLMLDNGVS-VDKFSASLVLKACSRL 132
               +NA I+  S         HG+  +  L ++  +L +G +  D  +   +LKAC+RL
Sbjct: 80  PASAYNAAIRALSLSDDGDRHGHGV-VRRCLPLYRALLRSGTARPDHLTFPFLLKACARL 138

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
                G      + ++   SD+F+ N         G +E AR+LFD+  +RD VS+N++I
Sbjct: 139 REWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLI 198

Query: 193 DGYVKSGNIESARELFDSM----PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER 248
            GYV+ GN   A ELF  M     +   + ++  + ++G  Q++  L+   ++     + 
Sbjct: 199 GGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRD-LELGRRL-HGFVDS 256

Query: 249 DLIS-----WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRL 303
           D +S      N+++   +KCG ++ A+++F+++  R VVSW  MI G+AK G +D AR++
Sbjct: 257 DGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKV 316

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           FDEMP+RDV   NA+M GYV+     +AL +F  MQ E  + PD+ ++V +L+A +QLG 
Sbjct: 317 FDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQ-EASVVPDEITMVNLLTACSQLGA 375

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           ++ G+ +HRY+EK +   +   G +LIDMY+KCG+IE AI +F++I + +   W AMI G
Sbjct: 376 LEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICG 435

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
           LA HG    A +    M  L  +PD+ITF G+L+AC HAGLVKEG   F LM   + LE 
Sbjct: 436 LANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLER 495

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
           +++HY CM+D+LGRAGH++ A  L+  MPMEP+ V+W  +  ACR   N+++GE  A  L
Sbjct: 496 KMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKL 555

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVR 603
           + +D S+S  YVLL+NM+A   M   A +VR+MM+   ++K+PGCS IEL GVVHEF V+
Sbjct: 556 VEIDPSDSGIYVLLANMYAEANMRKKADKVRAMMRHLGVEKVPGCSCIELNGVVHEFIVK 615

Query: 604 DKSRLQVRDIY 614
           DKS +    IY
Sbjct: 616 DKSHMDSHAIY 626


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 221/662 (33%), Positives = 362/662 (54%), Gaps = 82/662 (12%)

Query: 2   FVSANYNQPCNS--TQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSS 59
           F+ ++ + P +S     +L LL  CKTL  +  IHA+MI TG     +  +KL+     S
Sbjct: 19  FLPSSSDPPYDSLRNHPSLSLLHNCKTLQSLRLIHAQMIKTGLHNTNYALSKLLELCVIS 78

Query: 60  PCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDK 119
           P      +A  +F       ++ +  +WN + + ++   DP  AL ++  M+  G+  + 
Sbjct: 79  PHFDGLPYAISVFETI----QEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNS 134

Query: 120 FSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK 179
           ++   +LK+C++    +EG QIHG + K+ +  DLF+   LIS+YV              
Sbjct: 135 YTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYV-------------- 180

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAW 239
                            ++G +E AR++FD  P   R+++S+ +++ GYA  +  ++ A 
Sbjct: 181 -----------------QNGRLEDARKVFDRSP--HRDVVSYTALIKGYAS-RGYIESAQ 220

Query: 240 QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK--------------------- 278
           ++F+++P +D++SWN+M+ G  + G   +A  LF +M K                     
Sbjct: 221 KLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSG 280

Query: 279 -----RDVVSWAN-------------MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
                R V SW +             ++D Y+K G ++ A  LF+ +  +DV++ N ++G
Sbjct: 281 SIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIG 340

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           GY       +AL +F  M       P+D +++ +L A A LG ID G  IH Y++K   S
Sbjct: 341 GYTHMNLYKEALLLFQEM-LRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKS 399

Query: 381 LNGKHGV--ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
                 +  +LIDMY+KCG IE A +VF  I   S+  WNAMI G A+HG  + AFD+  
Sbjct: 400 ATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFS 459

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
            M ++ IEPDDITF GLL+AC+ +G++  G   F  M + +K+ P+L+HYGCM+D+LG +
Sbjct: 460 RMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHS 519

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           G  + A  +I +M MEP+ VIW +LL AC+   N+ +GE  A++LI ++  N   YVLLS
Sbjct: 520 GLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLS 579

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           N++A  G WN+  ++R+++ ++ +KK+PGCS IE++ VVHEF + DK   + R+IY ML+
Sbjct: 580 NIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLE 639

Query: 619 NM 620
            M
Sbjct: 640 EM 641


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/612 (35%), Positives = 353/612 (57%), Gaps = 14/612 (2%)

Query: 12  NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
           +S  +    L    +L  + Q+HA+++ +   ++T L  KLV   SS   +   ++A  +
Sbjct: 21  HSHHTLFSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKLV--ISSCALSSSLDYALSV 78

Query: 72  FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
           F        K +  L N  ++  S   +P++ L+++  M   G++VD+FS   +LKA SR
Sbjct: 79  F----NLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSR 134

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
           +  + EGL+IHGL  K+ F SD F+Q  L+ +Y  CG +  AR +FDKM  RD V+++ M
Sbjct: 135 VKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIM 194

Query: 192 IDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERD 249
           IDGY +SG    A  LF+ M     E + +  ++VL+   +    L +   I + + E +
Sbjct: 195 IDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGR-AGNLSYGKMIHDFIMENN 253

Query: 250 LIS----WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFD 305
           ++      ++++     CG MD A  LF+KM  +++V+   M+ GY+KLG+++ AR +F+
Sbjct: 254 IVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFN 313

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
           +M K+D+V  +AM+ GY  +    +AL +F+ MQ  L + PD  +++ V++A A LG +D
Sbjct: 314 QMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQ-SLGIKPDQVTMLSVITACAHLGALD 372

Query: 366 KGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
           +   IH +++K+ F        ALI+MY+KCGS+E A ++F+++   +V  W  MI+  A
Sbjct: 373 QAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFA 432

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL 485
           +HG    A     +ME  +IEP+ ITF G+L AC+HAGLV+EG   F  M   H + P+ 
Sbjct: 433 MHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKH 492

Query: 486 QHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIG 545
            HYGCMVD+ GRA  +  A  L+E MP+ PN +IW +L++ACR +  + +GE  AK L+ 
Sbjct: 493 VHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLE 552

Query: 546 MDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDK 605
           +D  +  ++V LSN++A    W D  +VR +MK + + K  GCS  EL   +HEF V D+
Sbjct: 553 LDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADR 612

Query: 606 SRLQVRDIYYML 617
           S     +IY  L
Sbjct: 613 SHKHADEIYEKL 624


>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/617 (34%), Positives = 353/617 (57%), Gaps = 15/617 (2%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTE---FAR 69
           +++  L LLR+C+++  ++QIHA ++  GF   + + ++L+AS+ +            AR
Sbjct: 9   ASRHVLELLRQCRSIQHLDQIHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGGLCHAR 68

Query: 70  YIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKAC 129
            +F +      + D F++N +++ YS+   P+EAL +   +L  G+  ++F+   VLKAC
Sbjct: 69  RLFDRI----PEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKAC 124

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
           + +  +E  L  HG++ K+ F   +F+ N L+  +   G L  +R+ F +M  R+ VS+N
Sbjct: 125 TTVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWN 184

Query: 190 SMIDGYVKSGNIESARELFDSMPIRER-----NLISWNSVLNGYAQLKSGLQFAWQIFEK 244
           +MI GY ++G +  A  LF  M  +        L+S     +    L+ G      +   
Sbjct: 185 TMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVS 244

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
               D I  N++L    KCG +  A   FD MP ++VV+W +M+   AK G VD  R  F
Sbjct: 245 GSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWF 304

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
           ++MP+R++V+ NAM+  YV+ G   + L++++ M+  L + PD+ +L  VLSA  Q G +
Sbjct: 305 EQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMR-SLGITPDEFTLAGVLSACGQNGDL 363

Query: 365 DKGVAIHRYLEKDQFSLNGKHGV-ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
             G  IH Y+ +D F+  G   + +L+DMY++CG ++ AI +F ++ + +V  WN +I  
Sbjct: 364 ASGKMIHCYV-RDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGA 422

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
           LA+HG  +        M   +  PD+ITF GLL+AC+H GL++ G   FE M R++ +EP
Sbjct: 423 LAMHGRAQETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNVEP 482

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
           E++HYGCMVD+LGR GH+  A NLI+DM ++P+ V+W  LL ACR + N+ +G+ V K L
Sbjct: 483 EVEHYGCMVDLLGRRGHLAKAVNLIKDMSIKPDVVVWGALLGACRIHGNVEIGKLVIKQL 542

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVR 603
           + ++      +VL+ N+F     W D +++R +MKE+  KK  G S IE++ ++HEF V 
Sbjct: 543 LELEGITGGLFVLICNLFYETNQWEDMKKLRKLMKEQGTKKDMGVSSIEVKNIIHEFGVE 602

Query: 604 DKSRLQVRDIYYMLDNM 620
           D       +IY  +D +
Sbjct: 603 DLRHESTNEIYAAVDQL 619


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/636 (34%), Positives = 355/636 (55%), Gaps = 60/636 (9%)

Query: 23  KCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKK 82
           +    N + Q+HA++I      + +    L+     + CT L     Y    +++     
Sbjct: 10  RVGNFNHLRQLHAQIIHNSLHHHNYWVALLI-----NHCTRLRAPPHYTHLLFNS-TLNP 63

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           + F++ ++++ YSH  D  + ++M+  M   GV  D F   +++K+         G+  H
Sbjct: 64  NVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAG-----TGGIGFH 118

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG--IRDSVSYNSMIDGYVKSGN 200
             + K+  GSD F++N +I +Y R G +  AR++FD++    R    +N+M+ GY K  +
Sbjct: 119 AHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWES 178

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
              A+ LFD MP  ERN+I+W +++ GYA++K  L+ A + F+ MPER ++SWN+ML G 
Sbjct: 179 EGQAQWLFDVMP--ERNVITWTAMVTGYAKVKD-LEAARRYFDCMPERSVVSWNAMLSGY 235

Query: 261 VKCGKMDDAQALFDKMP----KRDVVSWANMI---------------------------- 288
            + G  ++A  LFD+M     + D  +W  +I                            
Sbjct: 236 AQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNC 295

Query: 289 -------DGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
                  D YAK G +D AR+LF+ MP R+VV  N+M+ GY +NG S  A+E+F  M   
Sbjct: 296 FVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITA 355

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIEN 401
             L PD+ ++V V+SA   LG ++ G  + R+L ++Q  L+     A+I MYS+CGS+E+
Sbjct: 356 KKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMED 415

Query: 402 AIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461
           A +VF+++    V  +N +I+G A HG G  A +L+  M+   IEPD +TF G+L AC+H
Sbjct: 416 AKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSH 475

Query: 462 AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWR 521
           AGL++EG   FE ++     +P + HY CMVD+LGR G +E A+  +E MPMEP+  ++ 
Sbjct: 476 AGLLEEGRKVFESIK-----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYG 530

Query: 522 TLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581
           +LL+A R ++ + +GE  A  L  ++  NS +++LLSN++A  G W D  R+R  MK+  
Sbjct: 531 SLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGG 590

Query: 582 LKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           +KK  G SW+E  G +H+F V D+S  +  DIY +L
Sbjct: 591 VKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLL 626


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/596 (35%), Positives = 345/596 (57%), Gaps = 34/596 (5%)

Query: 25  KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDP 84
           + + D + I   ++ +G++KN +L+                  AR +F +      +KD 
Sbjct: 115 EKMPDRDLISWNVMLSGYVKNGNLSA-----------------ARALFNQM----PEKDV 153

Query: 85  FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGL 144
             WNA++  ++     +EA  +F  ML      ++ S + +L A  + G IE+  +    
Sbjct: 154 VSWNAMLSGFAQNGFVEEARKIFDQMLVK----NEISWNGLLSAYVQNGRIEDARR---- 205

Query: 145 LRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESA 204
           L       ++   NCL+  YVR   L+ AR LFD+M +RD +S+N MI GY ++G +  A
Sbjct: 206 LFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEA 265

Query: 205 RELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCG 264
           R LF+ +PIR+  + +W ++++G+ Q    L  A +IFE+MPE++ +SWN+M+ G V+  
Sbjct: 266 RRLFEELPIRD--VFAWTAMVSGFVQ-NGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQ 322

Query: 265 KMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVR 324
           +++ A+ LFD+MP R+  SW  M+ GYA+ G +D A+ LFDEMP+RD ++  AM+ GY +
Sbjct: 323 QIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQ 382

Query: 325 NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK 384
           +G S +AL +F  M+ +  +  + ++L   LS+ A++  ++ G  +H  L K  F     
Sbjct: 383 SGQSEEALHLFIKMKRDGGI-LNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYI 441

Query: 385 HGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS 444
            G AL+ MY KCGSIE A  VFE I +  +  WN MI G A HG G+ A  L   M +++
Sbjct: 442 AGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMT 500

Query: 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504
           I+PDD+T  G+L+AC+H GLV +G+  F  M + + +    +HY CM+D+LGRAG ++ A
Sbjct: 501 IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEA 560

Query: 505 RNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL 564
            NL++ MP  P+   W  LL A R + +  +GE  A+ +  M+  NS  YVLLSN++A  
Sbjct: 561 LNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAAS 620

Query: 565 GMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           G W + R +RS M+++ +KK+PG SW+E++   H F V D S  +   IY  L+ +
Sbjct: 621 GRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEEL 676



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 131/433 (30%), Positives = 227/433 (52%), Gaps = 51/433 (11%)

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           + A  R G  E  L +   +R+ +        N +IS Y+     + AR++F+KM  RD 
Sbjct: 67  ISAYMRKGQCESALSVFNGMRRRS----TVTYNAMISGYLSNNKFDCARKVFEKMPDRDL 122

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ--------------- 230
           +S+N M+ GYVK+GN+ +AR LF+ MP  E++++SWN++L+G+AQ               
Sbjct: 123 ISWNVMLSGYVKNGNLSAARALFNQMP--EKDVVSWNAMLSGFAQNGFVEEARKIFDQML 180

Query: 231 --------------LKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK 275
                         +++G ++ A ++F+   + +++SWN ++ G V+  ++DDA++LFD+
Sbjct: 181 VKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDR 240

Query: 276 MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
           MP RD +SW  MI GYA+ G +  ARRLF+E+P RDV A  AM+ G+V+NG   +A  IF
Sbjct: 241 MPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIF 300

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
           + M        ++ S   +++   Q   I+K     R L     S N      ++  Y++
Sbjct: 301 EEMP-----EKNEVSWNAMIAGYVQSQQIEKA----RELFDQMPSRNTSSWNTMVTGYAQ 351

Query: 396 CGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGL 455
           CG+I+ A  +F+++       W AMI+G A  G  E A  L ++M+R     +       
Sbjct: 352 CGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACA 411

Query: 456 LNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG--CMVDILGRAGHIEAARNLIEDMPM 513
           L++CA    ++ G    +L  R+ K   +  +     ++ + G+ G IE A ++ ED+  
Sbjct: 412 LSSCAEIAALELGK---QLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDIT- 467

Query: 514 EPNDVIWRTLLSA 526
           E + V W T+++ 
Sbjct: 468 EKDIVSWNTMIAG 480



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 186/345 (53%), Gaps = 26/345 (7%)

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFE 243
           D V +N  I  Y++ G  ESA  +F+ M  R R+ +++N++++GY    +    A ++FE
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGM--RRRSTVTYNAMISGYLS-NNKFDCARKVFE 115

Query: 244 KMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRL 303
           KMP+RDLISWN ML G VK G +  A+ALF++MP++DVVSW  M+ G+A+ G V+ AR++
Sbjct: 116 KMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKI 175

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN-MQCELYLHPDDASLVIVLSAIAQLG 362
           FD+M  ++ ++ N ++  YV+NG    A  +FD+ M  E+       S   ++    +  
Sbjct: 176 FDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEI------VSWNCLMGGYVRKK 229

Query: 363 HIDKGVAI-HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
            +D   ++  R   +D+ S N      +I  Y++ G +  A ++FE++    V  W AM+
Sbjct: 230 RLDDARSLFDRMPVRDKISWN-----IMITGYAQNGLLSEARRLFEELPIRDVFAWTAMV 284

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
           +G   +G+ + A  +  EM     E +++++  ++     +  +++    F+ M      
Sbjct: 285 SGFVQNGMLDEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELFDQMP----- 335

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
                 +  MV    + G+I+ A+ L ++MP + + + W  ++S 
Sbjct: 336 SRNTSSWNTMVTGYAQCGNIDQAKILFDEMP-QRDCISWAAMISG 379



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 166/338 (49%), Gaps = 28/338 (8%)

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
           + D++ WN  +   ++ G+ + A ++F+ M +R  V++  MI GY    + D AR++F++
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEK 116

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           MP RD+++ N M+ GYV+NG    A  +F+ M        D  S   +LS  AQ G +++
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQMP-----EKDVVSWNAMLSGFAQNGFVEE 171

Query: 367 GVAI-HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
              I  + L K++ S NG     L+  Y + G IE+A ++F+   D  +  WN ++ G  
Sbjct: 172 ARKIFDQMLVKNEISWNG-----LLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYV 226

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP-- 483
                + A  L    +R+ +  D I++  ++   A  GL+ E        RR+ +  P  
Sbjct: 227 RKKRLDDARSLF---DRMPVR-DKISWNIMITGYAQNGLLSEA-------RRLFEELPIR 275

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
           ++  +  MV    + G ++ A  + E+MP E N+V W  +++     + +   E   +  
Sbjct: 276 DVFAWTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMIAGYVQSQQI---EKARELF 331

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581
             M S N+SS+  +   +A  G  + A+ +   M +R+
Sbjct: 332 DQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRD 369


>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 222/601 (36%), Positives = 332/601 (55%), Gaps = 77/601 (12%)

Query: 3   VSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCT 62
           ++ N N     +   L LL KCK+++ + QI ++M+ TG I++   +++L+A  + S   
Sbjct: 39  INWNTNHSFVLSNPFLSLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWR 98

Query: 63  PLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLD-NGVSVDKFS 121
            L ++   I F         + F WN  I+ +    +P+EA+V++  +L  +G   D ++
Sbjct: 99  DL-DYCTNILFN----TRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYT 153

Query: 122 ASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
             L+ KAC+RL LI  G +I G +  + F SD+F+ N +I L V C              
Sbjct: 154 YPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSC-------------- 199

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQI 241
                            G+++ AR++FD                                
Sbjct: 200 -----------------GDLDGARKMFD-------------------------------- 210

Query: 242 FEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIAR 301
             K   RDL+SWNSM++G   CG ++ A+ LFD M  + +VSW  M+ GYA+ G +D+A 
Sbjct: 211 --KSCVRDLVSWNSMING--YCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAW 266

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
           +LFDEMP +DVV  NAM+GGYV      +AL +F+ MQ  + ++PD+ ++V  LSA +QL
Sbjct: 267 KLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQA-MNINPDEVTMVSCLSACSQL 325

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
           G +D G+ IH Y+EK + SLN   G ALIDMY+KCG I  AI+VF+++   +   W A+I
Sbjct: 326 GALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAII 385

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
           +GLA+HG    A     EM   S+ PD++TF GLL+AC H GLV+EG   F  M     L
Sbjct: 386 SGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNL 445

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
            P+L+HY CMVD+LGRAG +E A  LI+ MP+E + V+W  L  ACR + N+ +GE  A 
Sbjct: 446 SPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAAS 505

Query: 542 HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
            L+ MD  +S  YVLL+NM+    MW +A + R +M++R ++K P  SW  L   V  FF
Sbjct: 506 KLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPD-SWSLLS--VLRFF 562

Query: 602 V 602
           +
Sbjct: 563 L 563


>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 535

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/601 (35%), Positives = 323/601 (53%), Gaps = 71/601 (11%)

Query: 11  CNSTQSTLLL--LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFA 68
           C+ST    +L    + K+L ++ Q HA M+ TG   +T   +KLVA  +++P      +A
Sbjct: 4   CSSTTPVPILSFTERAKSLLEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYA 63

Query: 69  RYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA 128
             I  +     E  + F  N++I+ Y++   P+ AL +F  ML   V  DK+S + VLKA
Sbjct: 64  HSILNRI----ESPNGFTHNSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKA 119

Query: 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY 188
           C+     EEG QIHGL  K    +D+F++N                              
Sbjct: 120 CAAFCGFEEGRQIHGLFMKSDLVTDVFVEN------------------------------ 149

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER 248
            ++I+ Y +SG  E AR++ D                                  +MP R
Sbjct: 150 -TLINVYGRSGYFEIARKVLD----------------------------------RMPVR 174

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           D +SWNS+L   +  G +++A+ALFD+M +R+V SW  MI GYA  G V  AR +FD MP
Sbjct: 175 DAVSWNSLLSAYLDKGLVEEARALFDEMEERNVESWNFMISGYAAAGLVKEAREVFDSMP 234

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            +DVV+ NAM+  Y   G   + LE+F+ M  +    PD  +LV VLSA A LG + +G 
Sbjct: 235 VKDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDDSAERPDGFTLVNVLSACASLGSLSQGE 294

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            +H Y++K    + G    AL+DMYSKCG I+ A++VF       V  WN++I GL++HG
Sbjct: 295 WVHVYIDKHGIEIEGFVATALVDMYSKCGKIDKALEVFRDTSKRDVSTWNSIITGLSVHG 354

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
           LG+ A ++  EM     +P+ ITF G+L+AC H GL+ +    FE+M  ++ +EP ++HY
Sbjct: 355 LGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGLLDQARKLFEMMNSVYGIEPTIEHY 414

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
           GCMVD+LGR G  E A  L+ ++P +   ++  +LL AC+ +  L   E +A  L+  + 
Sbjct: 415 GCMVDLLGRMGKFEEAEELVNEVPADEASILLESLLGACKRFGKLEQAERIANRLLESNP 474

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
             SS YV +SN++A  G W++A  VR  M+   +KK PGCS IE++GVVHEF   +  R+
Sbjct: 475 RESSGYVQMSNLYASHGRWDEAMEVRGKMRAERVKKNPGCSMIEVDGVVHEFLAGEGLRI 534

Query: 609 Q 609
           +
Sbjct: 535 E 535


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/641 (34%), Positives = 347/641 (54%), Gaps = 80/641 (12%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
             +L LL  CKTL  +  IHA+MI TG     +  +KL+     SP      +A  +F  
Sbjct: 3   HPSLSLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFET 62

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
                ++ +  +WN + + ++   DP  AL ++  M+  G+  + ++   +LK+C++   
Sbjct: 63  I----QEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKA 118

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
             EG QIHG + K+ +  DL++   LIS+YV                             
Sbjct: 119 FREGQQIHGHVLKLGYDLDLYVHTSLISMYV----------------------------- 149

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN 254
             ++G +E AR++FD      R+++S+ +++ GYA  K  +  A ++F+++P +D++SWN
Sbjct: 150 --QNGRLEDARKVFDQSS--HRDVVSYTALITGYAS-KGYIASAQKMFDEIPIKDVVSWN 204

Query: 255 SMLHGCVKCGKMDDAQALFDKMPK--------------------------RDVVSWAN-- 286
           +M+ G  + G   +A  LF +M K                          R V SW +  
Sbjct: 205 AMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDH 264

Query: 287 -----------MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
                      +ID Y K G V+ A  LF+ +  +DV++ N ++GGY       +AL +F
Sbjct: 265 GFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLF 324

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK--DQFSLNGKHGVALIDMY 393
             M       P+D +++ +L A A LG I+ G  IH Y+ K     +    H  +LIDMY
Sbjct: 325 QEM-LRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMY 383

Query: 394 SKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
           +KCG IE A +VF+ I + S+  WNAMI G A+HG    AFD+   M +  IEPDDITF 
Sbjct: 384 AKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFV 443

Query: 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPM 513
           GLL+AC+H+G++  G   F  M+  +K+ P+L+HYGCM+D+LG +G  + A  +I  M M
Sbjct: 444 GLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEM 503

Query: 514 EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV 573
           EP+ VIW +LL AC+ Y N+ +GE  A++LI ++  N  SYVLLSN++A  G WN+  ++
Sbjct: 504 EPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKI 563

Query: 574 RSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           R+++ ++ +KK+PGCS IE++ VVHEF + DK   + R+IY
Sbjct: 564 RALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIY 604


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/646 (33%), Positives = 345/646 (53%), Gaps = 81/646 (12%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           L LL KC  +  + QIH+ +I +G        +KL+   + SP   L+ +A  +F   H 
Sbjct: 29  LNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLS-YALSLFHSIH- 86

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
             +  + F+WN +I+ +S    P  +L +F  ML +G+  +  +   + K+C++     E
Sbjct: 87  -HQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHE 145

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
             Q+H    K+A      +   LI +Y + G L  AR +FDK  +RD+VS+ ++I GYV 
Sbjct: 146 AKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVS 205

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
            G+++ AR L                                  F+++P +D++SWN+M+
Sbjct: 206 EGHVDDARRL----------------------------------FDEIPAKDVVSWNAMI 231

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVV--------------------------SWAN----- 286
            G V+ G+ ++A A F +M + DV                           SW       
Sbjct: 232 AGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFG 291

Query: 287 --------MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM 338
                   ++D Y+K G +  AR+LFD M  +DV+  N M+GGY       +AL +F+ M
Sbjct: 292 KNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVM 351

Query: 339 QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVAL----IDMYS 394
             E  + P+D + + VL A A LG +D G  +H Y++K+       + V+L    I MY+
Sbjct: 352 LRE-NVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYA 410

Query: 395 KCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTG 454
           KCG +E A +VF  +   S+  WNAMI+GLA++G  E A  L  EM     +PDDITF G
Sbjct: 411 KCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVG 470

Query: 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPME 514
           +L+AC  AG V+ G   F  M + + + P+LQHYGCM+D+L R+G  + A+ L+ +M ME
Sbjct: 471 VLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEME 530

Query: 515 PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVR 574
           P+  IW +LL+ACR +  +  GE VA+ L  ++  NS +YVLLSN++AG G W+D  ++R
Sbjct: 531 PDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIR 590

Query: 575 SMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           + + ++ +KK+PGC+ IE++GVVHEF V DK   Q  +I+ MLD +
Sbjct: 591 TKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEV 636


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/596 (35%), Positives = 344/596 (57%), Gaps = 34/596 (5%)

Query: 25  KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDP 84
           + + D + I   ++ +G++KN +L+                  AR +F +      +KD 
Sbjct: 115 EKMPDRDLISWNVMLSGYVKNGNLSA-----------------ARALFNQM----PEKDV 153

Query: 85  FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGL 144
             WNA++  ++     +EA  +F  ML      ++ S + +L A  + G IE+  +    
Sbjct: 154 VSWNAMLSGFAQNGFVEEARKIFDQMLVK----NEISWNGLLSAYVQNGRIEDARR---- 205

Query: 145 LRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESA 204
           L       ++   NCL+  YVR   L+ AR LFD+M +RD +S+N MI GY ++G +  A
Sbjct: 206 LFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEA 265

Query: 205 RELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCG 264
           R LF+ +PIR+  + +W ++++G+ Q    L  A +IFE+MPE++ +SWN+M+ G V+  
Sbjct: 266 RRLFEELPIRD--VFAWTAMVSGFVQ-NGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQ 322

Query: 265 KMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVR 324
           +++ A+ LFD+MP R+  SW  M+ GYA+ G +D A+ LFDEMP+RD ++  AM+ GY +
Sbjct: 323 QIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQ 382

Query: 325 NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK 384
           +G S +AL +F  M+ +  +  + ++L   LS+ A++  ++ G  +H  L K  F     
Sbjct: 383 SGQSEEALHLFIKMKRDGGI-LNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYI 441

Query: 385 HGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS 444
            G AL+ MY KCGSIE A  VFE I +  +  WN MI G A HG G+ A  L   M +++
Sbjct: 442 AGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMT 500

Query: 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504
           I+PDD+T  G+L+AC+H G V +G+  F  M + + +    +HY CM+D+LGRAG ++ A
Sbjct: 501 IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEA 560

Query: 505 RNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL 564
            NL++ MP  P+   W  LL A R + +  +GE  A+ +  M+  NS  YVLLSN++A  
Sbjct: 561 LNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAAS 620

Query: 565 GMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           G W + R +RS M+++ +KK+PG SW+E++   H F V D S  +   IY  L+ +
Sbjct: 621 GRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEEL 676



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 131/433 (30%), Positives = 227/433 (52%), Gaps = 51/433 (11%)

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           + A  R G  E  L +   +R+ +        N +IS Y+     + AR++F+KM  RD 
Sbjct: 67  ISAYMRKGQCESALSVFNGMRRRS----TVTYNAMISGYLSNNKFDCARKVFEKMPDRDL 122

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ--------------- 230
           +S+N M+ GYVK+GN+ +AR LF+ MP  E++++SWN++L+G+AQ               
Sbjct: 123 ISWNVMLSGYVKNGNLSAARALFNQMP--EKDVVSWNAMLSGFAQNGFVEEARKIFDQML 180

Query: 231 --------------LKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK 275
                         +++G ++ A ++F+   + +++SWN ++ G V+  ++DDA++LFD+
Sbjct: 181 VKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDR 240

Query: 276 MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
           MP RD +SW  MI GYA+ G +  ARRLF+E+P RDV A  AM+ G+V+NG   +A  IF
Sbjct: 241 MPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIF 300

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
           + M        ++ S   +++   Q   I+K     R L     S N      ++  Y++
Sbjct: 301 EEMP-----EKNEVSWNAMIAGYVQSQQIEKA----RELFDQMPSRNTSSWNTMVTGYAQ 351

Query: 396 CGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGL 455
           CG+I+ A  +F+++       W AMI+G A  G  E A  L ++M+R     +       
Sbjct: 352 CGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACA 411

Query: 456 LNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG--CMVDILGRAGHIEAARNLIEDMPM 513
           L++CA    ++ G    +L  R+ K   +  +     ++ + G+ G IE A ++ ED+  
Sbjct: 412 LSSCAEIAALELGK---QLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDIT- 467

Query: 514 EPNDVIWRTLLSA 526
           E + V W T+++ 
Sbjct: 468 EKDIVSWNTMIAG 480



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 186/345 (53%), Gaps = 26/345 (7%)

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFE 243
           D V +N  I  Y++ G  ESA  +F+ M  R R+ +++N++++GY    +    A ++FE
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGM--RRRSTVTYNAMISGYLS-NNKFDCARKVFE 115

Query: 244 KMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRL 303
           KMP+RDLISWN ML G VK G +  A+ALF++MP++DVVSW  M+ G+A+ G V+ AR++
Sbjct: 116 KMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKI 175

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN-MQCELYLHPDDASLVIVLSAIAQLG 362
           FD+M  ++ ++ N ++  YV+NG    A  +FD+ M  E+       S   ++    +  
Sbjct: 176 FDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEI------VSWNCLMGGYVRKK 229

Query: 363 HIDKGVAI-HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
            +D   ++  R   +D+ S N      +I  Y++ G +  A ++FE++    V  W AM+
Sbjct: 230 RLDDARSLFDRMPVRDKISWN-----IMITGYAQNGLLSEARRLFEELPIRDVFAWTAMV 284

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
           +G   +G+ + A  +  EM     E +++++  ++     +  +++    F+ M      
Sbjct: 285 SGFVQNGMLDEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELFDQMP----- 335

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
                 +  MV    + G+I+ A+ L ++MP + + + W  ++S 
Sbjct: 336 SRNTSSWNTMVTGYAQCGNIDQAKILFDEMP-QRDCISWAAMISG 379



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 166/338 (49%), Gaps = 28/338 (8%)

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
           + D++ WN  +   ++ G+ + A ++F+ M +R  V++  MI GY    + D AR++F++
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEK 116

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           MP RD+++ N M+ GYV+NG    A  +F+ M        D  S   +LS  AQ G +++
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQMP-----EKDVVSWNAMLSGFAQNGFVEE 171

Query: 367 GVAI-HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
              I  + L K++ S NG     L+  Y + G IE+A ++F+   D  +  WN ++ G  
Sbjct: 172 ARKIFDQMLVKNEISWNG-----LLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYV 226

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP-- 483
                + A  L    +R+ +  D I++  ++   A  GL+ E        RR+ +  P  
Sbjct: 227 RKKRLDDARSLF---DRMPVR-DKISWNIMITGYAQNGLLSEA-------RRLFEELPIR 275

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
           ++  +  MV    + G ++ A  + E+MP E N+V W  +++     + +   E   +  
Sbjct: 276 DVFAWTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMIAGYVQSQQI---EKARELF 331

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581
             M S N+SS+  +   +A  G  + A+ +   M +R+
Sbjct: 332 DQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRD 369


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/499 (41%), Positives = 298/499 (59%), Gaps = 35/499 (7%)

Query: 124 LVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183
            V+KAC+   +   GL +H  + K  F  D ++ N LI LY     L  A+QLF     R
Sbjct: 5   FVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDR 64

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFE 243
           D VS+N+MIDGYVK G +   R +FD M  R+  +ISWN+++NGYA +   +  A ++F+
Sbjct: 65  DVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRD--VISWNTIINGYA-IVGKIDEAKRLFD 121

Query: 244 KMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRL 303
           +MPER+L+SWNSML G VKCG +++A  LF +MP RDVVSW +M+  YA+ G+ + A  L
Sbjct: 122 EMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALAL 181

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           FD+                      M+A+ +           P +A++V +LSA A LG 
Sbjct: 182 FDQ----------------------MRAVGV----------KPTEATVVSLLSACAHLGA 209

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           +DKG+ +H Y+  ++  +N   G AL+DMY+KCG I  A +VF  +E   V  WN +I G
Sbjct: 210 LDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAG 269

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
           +AIHG  + A  L  EM+  S+EP+DITF  +L+AC+HAG+V EG    + M   + +EP
Sbjct: 270 MAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEP 329

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
           +++HY C++D+L RAG +E A  LI  MPMEPN      LL  CR + N  +GE V K L
Sbjct: 330 KVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRL 389

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVR 603
           I +   +S  Y+LLSN++A    W+DAR+VR++MK   + K+PG S IEL+G+VH F   
Sbjct: 390 INLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAG 449

Query: 604 DKSRLQVRDIYYMLDNMWT 622
           D S  +   IY  L+ + T
Sbjct: 450 DWSHPESNKIYDKLNEIHT 468



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 40/248 (16%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D   WN+++  Y+    P EAL +F  M   GV   + +   +L AC+ LG +++GL +
Sbjct: 157 RDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHL 216

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H  +       +  +   L+ +Y +CG +  A Q+F+ M  +D +++N++I G    G++
Sbjct: 217 HTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHV 276

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
           + A++LF  M                               E   E + I++ +ML  C 
Sbjct: 277 KEAQQLFKEMK------------------------------EASVEPNDITFVAMLSACS 306

Query: 262 KCGKMDDAQALFDKM-------PKRDVVSWANMIDGYAKLGRVDIARRLFDEMP-KRDVV 313
             G +D+ Q L D M       PK  V  +  +ID  A+ G ++ A  L   MP + +  
Sbjct: 307 HAGMVDEGQKLLDCMSSSYGIEPK--VEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPS 364

Query: 314 ACNAMMGG 321
           A  A++GG
Sbjct: 365 ALGALLGG 372



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 4/126 (3%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           E KD   WN II   +     KEA  +F  M +  V  +  +   +L ACS  G+++EG 
Sbjct: 256 ESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQ 315

Query: 140 QIHGLLRKVAFGSDLFLQ--NCLISLYVRCGYLEFARQLFDKMGIRDSVS-YNSMIDGYV 196
           ++   +   ++G +  ++  +C+I L  R G LE A +L   M +  + S   +++ G  
Sbjct: 316 KLLDCMSS-SYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCR 374

Query: 197 KSGNIE 202
             GN E
Sbjct: 375 IHGNFE 380


>gi|354805230|gb|AER41645.1| CRR4 [Oryza punctata]
          Length = 632

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/519 (38%), Positives = 310/519 (59%), Gaps = 8/519 (1%)

Query: 107 FCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVR 166
           +  M   GV  + F+ + +L+AC+ LGL      +HG + +  FGSD+F+QN L+ +Y R
Sbjct: 98  YVAMRAQGVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYYR 157

Query: 167 CGYLEFA-----RQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISW 221
           CG          RQ+FD+M  +D VS+NS++  Y+ SG+   A  LF++MP  ERN++SW
Sbjct: 158 CGGGGAGGVGAARQVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMP--ERNVVSW 215

Query: 222 NSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV 281
           N+V+ G+A+    +  A  +F++MP R+ +SWN M+ G    G ++ A+++FD+M ++DV
Sbjct: 216 NTVVAGFAR-TGDMVTARTVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDV 274

Query: 282 VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
           VSW  M+  YAK+G +D A+ LFD MP +++V+ NAM+ GY  N    +AL  F  M  E
Sbjct: 275 VSWTAMVSAYAKIGDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLE 334

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIEN 401
               PD+A+LV V+SA AQLG ++    I  ++ K    L    G ALIDM++KCG +  
Sbjct: 335 GRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNTHLTVALGNALIDMFAKCGDVGR 394

Query: 402 AIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461
           A  +F ++E   +  W  MI+G A +GL   A  +   M R  +E D   F   L AC H
Sbjct: 395 AQSIFYKMETRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAALAACTH 454

Query: 462 AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWR 521
            GL++EG   F  M   + ++P ++HYGC+VD+LGRAG+++ A   IE MP+EP+ VIW 
Sbjct: 455 GGLLQEGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAILFIESMPLEPSVVIWV 514

Query: 522 TLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581
           TLLS+C  + N  + E V+K +  ++  NSS  VL+SN  A  G W+     R+ M+   
Sbjct: 515 TLLSSCVAHGNAELIEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIGARTSMRNWG 574

Query: 582 LKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           ++K+PG S I++   VHEF  +D    + ++IY  +D +
Sbjct: 575 IEKVPGSSLIQVGSEVHEFLAKDTRHERRKEIYETVDGL 613


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/606 (34%), Positives = 340/606 (56%), Gaps = 41/606 (6%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
           +  + LLR CK    ++QI A+++T G   N  +    + + S          AR +F K
Sbjct: 13  EKFITLLRSCKNYERLHQIQAQIVTHGLEHNDFVAPNFITTCSR---FKRIHHARKLFDK 69

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
                 + +   WNA+ + Y      ++ +V+F  +       + F+  +++K+C +L  
Sbjct: 70  I----PQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEG 125

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           + EG ++H    K  F S+ F+   LI +Y + G +E A ++F +M  R+ V + ++I+G
Sbjct: 126 VREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIING 185

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN 254
           Y+  G++ S R LFD  P  ER+++ W+ +++GY + K+ +  A ++F+KMP RD +SWN
Sbjct: 186 YILCGDVVSGRRLFDLAP--ERDVVMWSVLISGYIESKN-MAAARELFDKMPNRDTMSWN 242

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
           +ML+G    G+++  + +FD+MP+R+V SW  +I                          
Sbjct: 243 AMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLI-------------------------- 276

Query: 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
                GGYV+NG   + LE F  M  E ++ P+D +LV VLSA ++LG +D G  +H Y 
Sbjct: 277 -----GGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYA 331

Query: 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
           E   +  N   G  LIDMY+KCG IENA+ VF  ++   +  WN +INGLAIHG    A 
Sbjct: 332 ESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDAL 391

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
            +   M+    EPD +TF G+L+AC H GLVK+G L F+ M   + + P+++HYGCMVD+
Sbjct: 392 GMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVDL 451

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           LGRAG ++ A N I  MP+EP+ VIW  LL ACR Y+N+ + E   + LI ++ +N +++
Sbjct: 452 LGRAGLLDQALNFIRKMPIEPDAVIWAALLGACRLYKNVEIAELALQRLIELEPNNPANF 511

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           V++SN++  LG   D  R++  M++   +KLPGCS IE    V EF+  D+   +   IY
Sbjct: 512 VMVSNIYKDLGRSEDVARLKIAMRDTGFRKLPGCSVIECNDSVVEFYSLDERHSETESIY 571

Query: 615 YMLDNM 620
            +L  +
Sbjct: 572 RVLKGL 577


>gi|224071603|ref|XP_002303536.1| predicted protein [Populus trichocarpa]
 gi|222840968|gb|EEE78515.1| predicted protein [Populus trichocarpa]
          Length = 596

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/574 (36%), Positives = 329/574 (57%), Gaps = 9/574 (1%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           +L    T N   Q HA +I  GF     L  + +   + +    ++++   I   YH   
Sbjct: 29  ILNNYLTANQAKQTHACIIINGFNNLEPLLVRQILLSARNNPRRISQYVHSIL--YHL-- 84

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
              D F W   I+ +S     KEAL ++  M   G+    F+ S  L+A +R      G+
Sbjct: 85  PHPDSFSWGWAIRYFSQQGQFKEALYLYVQMQRQGLCPSTFAVSSALRAYARTTYKMGGM 144

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
            IH    K  F + +++Q  L+ LY + G +  A+++FD++  ++ VS+NS++ G++KSG
Sbjct: 145 SIHAESYKYGFSNCVYVQTALVDLYSKLGDMNTAQKVFDELAEKNVVSWNSILSGHLKSG 204

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
           N+  A+ +FD   I ++++ISWNS+++GYA++   +  A  +F++MPE++  SWN+++ G
Sbjct: 205 NLLEAQRVFDQ--ISKKDVISWNSMISGYAKI-GDMDRACVLFQQMPEKNYSSWNALISG 261

Query: 260 CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM 319
            V CG +  A   FD MP+R+ VSW  MI GY+K G VD A +LFD++ K+D++  NAM+
Sbjct: 262 YVNCGDIKSAWRFFDAMPERNSVSWITMIAGYSKCGDVDSASKLFDQIAKKDLLTFNAMI 321

Query: 320 GGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
             + +N    KAL +F  M +    + PD  +L  V+SA +QLG +     I  Y+    
Sbjct: 322 SCFAQNSQPRKALWLFSEMLKAYANIQPDQMTLASVVSACSQLGDLRFASWIESYVNDLG 381

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
             ++ +   AL+D+Y+KCGS++ A ++F  +    V  ++AMI+G  I+G    A  L  
Sbjct: 382 TEIDDQLVTALLDLYAKCGSVDKAYELFHGLNKKDVVAYSAMISGCGINGKVADAIKLFD 441

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
            M    I P+  TFTGLL AC HAGLVKEG   F  M+  H L P   HY  MVD+LGRA
Sbjct: 442 MMVDAQIHPNLATFTGLLTACNHAGLVKEGYRFFSSMKD-HGLVPSTDHYAIMVDLLGRA 500

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           G ++ A  LI+ MPM+P+  +W  LL AC  + N+ +GE  A+H   ++++ ++ Y LL+
Sbjct: 501 GRLQDAYELIKSMPMQPHSGVWGALLLACNVHNNVELGEIAAQHCFNLETNATAYYSLLA 560

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           N+++  G W+D  R+R + KE+ L KL GCSW E
Sbjct: 561 NIYSSAGRWDDVGRLRKLWKEKKLAKLSGCSWTE 594


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 215/631 (34%), Positives = 348/631 (55%), Gaps = 55/631 (8%)

Query: 31  NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAI 90
           +++H R++  GF +N  L   L+  +S   C  L E  +      H     +D   WN +
Sbjct: 153 SEVHGRILKCGFGRNKSLNNNLMGLYSK--CGKLKEVCQLFEKMTH-----RDVISWNTM 205

Query: 91  IKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAF 150
           I  Y      +EAL +F  ML +GV  D+ +   ++  C++L  +E G ++H  +     
Sbjct: 206 ISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKL 265

Query: 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR--DSVSYNSMIDGYVKSGNIESARELF 208
                L NCL+ +Y +CG ++ A  L  +      D V + +++ GYVKS  I+ AR+LF
Sbjct: 266 WIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLF 325

Query: 209 DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI----SWNSMLHGCV--- 261
           D M   ER+L+SW ++++GY Q     + + ++F++M   ++I    +  ++L  CV   
Sbjct: 326 DKM--NERSLVSWTTMMSGYVQGGYYCE-SLELFQQMRFENVIPDEVALVTVLSACVHLE 382

Query: 262 --------------------------------KCGKMDDAQALFDKMPKRDVVSWANMID 289
                                           KCGK+D+A   F+++P +   SW +M+D
Sbjct: 383 DFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLD 442

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
           G+ + G VD AR  F+++P++D+V+ N M+  YV++    ++ EIF  MQ    + PD  
Sbjct: 443 GFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSS-NVKPDKT 501

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           +L+ +LS+ A++G ++ G+ ++ Y+EK++  ++   G ALIDMY KCG +E A ++F QI
Sbjct: 502 TLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQI 561

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
            + +V  W AM+   A+ G    A DL +EME   ++PD +TF  LL AC+H GLV EG 
Sbjct: 562 IEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGY 621

Query: 470 LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRN 529
             F  +R  + + P + HYGCMVD+LGR GH+E     IE MP+EP+  IW +L+ ACR+
Sbjct: 622 KYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRS 681

Query: 530 YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCS 589
           + N+ + E   K LI +D +N+ ++VLLSN++A  G W+D  +VR+ + E  + K PG +
Sbjct: 682 HHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFT 741

Query: 590 WIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            IE  GVVHEF     S L   DI  ML ++
Sbjct: 742 MIEQNGVVHEFVA---SNLVSADILCMLQDI 769



 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 159/549 (28%), Positives = 281/549 (51%), Gaps = 56/549 (10%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVA---SFSSSPCTPLTEFARYIFFKYH 76
           LL+ C  + + + IHA +IT   I +  +T++++A   S ++  C      A  I     
Sbjct: 41  LLKSCSNIREFSPIHAHLITANLIHDPEITSQVLAFLLSVNNLDC------AHQIL---- 90

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
           ++  + +  +WN +++       P+E L  +  M+  GV +D  +   ++ AC +   ++
Sbjct: 91  SYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVK 150

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G ++HG + K  FG +  L N L+ LY +CG L+   QLF+KM  RD +S+N+MI  YV
Sbjct: 151 LGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYV 210

Query: 197 KSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN 254
             G    A +LFD M +     + I+  S+++  A+LK  L+   ++   + +  L    
Sbjct: 211 LKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKD-LEMGKRLHLYIVDNKLWIRG 269

Query: 255 SMLHGCV----KCGKMDDAQALFDKMPKR--DVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           S+L+  V    KCGKMD+A  L  +  +   DVV W  ++ GY K  ++D AR+LFD+M 
Sbjct: 270 SLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMN 329

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
           +R +V+   MM GYV+ GY  ++LE+F  M+ E  + PD+ +LV VLSA   L   D G 
Sbjct: 330 ERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVI-PDEVALVTVLSACVHLEDFDLGR 388

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI----------------EDG 412
           ++H ++      ++G  G AL+D+Y+KCG ++ A++ FEQ+                  G
Sbjct: 389 SVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSG 448

Query: 413 SVDH---------------WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            VD                WN M+N    H L   +F++  +M+  +++PD  T   LL+
Sbjct: 449 GVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLS 508

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
           +CA  G +  G+     + + +++  +      ++D+ G+ G +E A  +   + +E N 
Sbjct: 509 SCAKVGALNHGIWVNVYIEK-NEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQI-IEKNV 566

Query: 518 VIWRTLLSA 526
            +W  +++A
Sbjct: 567 FVWTAMMAA 575


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/441 (42%), Positives = 285/441 (64%), Gaps = 17/441 (3%)

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK 232
           AR+LFDKM   +++S+N ++ GYV++G I  AR++FD MP  ERN++SW +++ GY Q +
Sbjct: 13  ARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMP--ERNVVSWTAMIRGYVQ-E 69

Query: 233 SGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYA 292
             ++ A  +F +MPER+++SW  ML G ++ G++D+A+ LFD MP +DVV+  NMIDG  
Sbjct: 70  GLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVASTNMIDGLC 129

Query: 293 KLGRVDIARRLFDEMPKRDVVACNAMMGG-------------YVRNGYSMKALEIFDNMQ 339
             GR+  AR +FDEMP+R+VVA  +M+ G             Y R G+ ++AL +F  MQ
Sbjct: 130 SEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQ 189

Query: 340 CELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSI 399
            E  + P   S++ VLS    L  +D G  +H  L + QF ++      LI MY KCG +
Sbjct: 190 RE-GVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDL 248

Query: 400 ENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
             A +VF++     +  WN++I G A HG GE A ++  +M   SI PD+ITF G+L+AC
Sbjct: 249 VTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSAC 308

Query: 460 AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI 519
           ++ G VKEGL  FE M+  ++++P+ +HY CMVD+LGRAG +  A NLIE+MP+E + ++
Sbjct: 309 SYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIV 368

Query: 520 WRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579
           W  LL ACR ++NL++ E  AK L+ ++ +N+  Y+LLSN+++    W D   +R  M+ 
Sbjct: 369 WGALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRA 428

Query: 580 RNLKKLPGCSWIELEGVVHEF 600
           +NL+K PGCSWIE++  VH F
Sbjct: 429 KNLRKSPGCSWIEVDKKVHIF 449



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 15/231 (6%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +KD   W+ +IK Y       EAL +F LM   GV     S   VL  C  L  ++ G Q
Sbjct: 159 EKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQ 218

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  L +  F  D+++ + LI++Y++CG L  A+++FD+   +D V +NS+I GY + G 
Sbjct: 219 VHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGF 278

Query: 201 IESARELF-----DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
            E A E+F      S+   E   I   S  +   ++K GL    +IFE M  +  +   +
Sbjct: 279 GEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGL----EIFESMKSKYQVDPKT 334

Query: 256 MLHGCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIA 300
             + C+     + GK+++A  L + MP + D + W  ++        +D+A
Sbjct: 335 EHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLA 385



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 111/241 (46%), Gaps = 34/241 (14%)

Query: 268 DAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGY 327
           +A+ LFDKMP+ + +SW  ++ GY + G +  AR++FD+MP+R+VV+  AM+ GYV+ G 
Sbjct: 12  EARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGL 71

Query: 328 SMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE-KDQFSLNGKHG 386
             +A  +F  M        +  S  ++L  + + G +D+   +   +  KD  +      
Sbjct: 72  IEEAELLFWRMP-----ERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVA-----S 121

Query: 387 VALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE 446
             +ID     G +  A ++F+++   +V  W +MI+G                      E
Sbjct: 122 TNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISG----------------------E 159

Query: 447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARN 506
            DD T++ ++      G   E L  F LM+R   + P       ++ + G    ++  R 
Sbjct: 160 KDDGTWSTMIKIYERKGFELEALALFSLMQR-EGVRPSFPSVISVLSVCGSLASLDHGRQ 218

Query: 507 L 507
           +
Sbjct: 219 V 219


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 221/620 (35%), Positives = 339/620 (54%), Gaps = 22/620 (3%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           +L  CKT +   Q+H++ IT G   N     KL   + S           ++ + Y  F 
Sbjct: 40  ILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCS-------RLGGHVSYAYKLFV 92

Query: 80  EKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR-LGLIE 136
           +  +P   +WN +IK +S      E + ++  ML  GV+ D  +   +L    R  G + 
Sbjct: 93  KIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALA 152

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G ++H  + K   GS+L++QN L+ +Y  CG ++ AR +FD+    D  S+N MI GY 
Sbjct: 153 CGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYN 212

Query: 197 KSGNIESARELFDSMPIRERNLISWNSV-----LNGYAQLKSG---LQFAWQIFEKMPER 248
           +    E + EL   M   ERNL+S  SV     L+  +++K      +    + E   E 
Sbjct: 213 RMKEYEESIELLVEM---ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEP 269

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
            L   N++++    CG+MD A  +F  M  RDV+SW +++ GY + G + +AR  FD+MP
Sbjct: 270 SLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMP 329

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            RD ++   M+ GY+R G   ++LEIF  MQ    + PD+ ++V VL+A A LG ++ G 
Sbjct: 330 VRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI-PDEFTMVSVLTACAHLGSLEIGE 388

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            I  Y++K++   +   G ALIDMY KCG  E A KVF  ++      W AM+ GLA +G
Sbjct: 389 WIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNG 448

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
            G+ A  +  +M+ +SI+PDDIT+ G+L+AC H+G+V +    F  MR  H++EP L HY
Sbjct: 449 QGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHY 508

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
           GCMVD+LGRAG ++ A  ++  MPM PN ++W  LL A R + +  + E  AK ++ ++ 
Sbjct: 509 GCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEP 568

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
            N + Y LL N++AG   W D R VR  + +  +KK PG S IE+ G  HEF   DKS L
Sbjct: 569 DNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHL 628

Query: 609 QVRDIYYMLDNMWTPDSVAT 628
           Q  +IY  L+ +    + A 
Sbjct: 629 QSEEIYMKLEELAQESTFAA 648


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 221/620 (35%), Positives = 339/620 (54%), Gaps = 22/620 (3%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           +L  CKT +   Q+H++ IT G   N     KL   + S           ++ + Y  F 
Sbjct: 40  ILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCS-------RLGGHVSYAYKLFV 92

Query: 80  EKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR-LGLIE 136
           +  +P   +WN +IK +S      E + ++  ML  GV+ D  +   +L    R  G + 
Sbjct: 93  KIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALA 152

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G ++H  + K   GS+L++QN L+ +Y  CG ++ AR +FD+    D  S+N MI GY 
Sbjct: 153 CGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYN 212

Query: 197 KSGNIESARELFDSMPIRERNLISWNSV-----LNGYAQLKSG---LQFAWQIFEKMPER 248
           +    E + EL   M   ERNL+S  SV     L+  +++K      +    + E   E 
Sbjct: 213 RMKEYEESIELLVEM---ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEP 269

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
            L   N++++    CG+MD A  +F  M  RDV+SW +++ GY + G + +AR  FD+MP
Sbjct: 270 SLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMP 329

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            RD ++   M+ GY+R G   ++LEIF  MQ    + PD+ ++V VL+A A LG ++ G 
Sbjct: 330 VRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI-PDEFTMVSVLTACAHLGSLEIGE 388

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            I  Y++K++   +   G ALIDMY KCG  E A KVF  ++      W AM+ GLA +G
Sbjct: 389 WIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNG 448

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
            G+ A  +  +M+ +SI+PDDIT+ G+L+AC H+G+V +    F  MR  H++EP L HY
Sbjct: 449 QGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHY 508

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
           GCMVD+LGRAG ++ A  ++  MPM PN ++W  LL A R + +  + E  AK ++ ++ 
Sbjct: 509 GCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEP 568

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
            N + Y LL N++AG   W D R VR  + +  +KK PG S IE+ G  HEF   DKS L
Sbjct: 569 DNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHL 628

Query: 609 QVRDIYYMLDNMWTPDSVAT 628
           Q  +IY  L+ +    + A 
Sbjct: 629 QSEEIYMKLEELAQESTFAA 648


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 222/599 (37%), Positives = 357/599 (59%), Gaps = 23/599 (3%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           +HA++I  G    T    KL+ SF +       ++A+ +F +      + + F++N++I+
Sbjct: 7   LHAQIILHGLTNETLTLGKLI-SFCAVDDAGDLQYAQRMFDQI----PQPNKFMYNSLIR 61

Query: 93  TYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGS 152
            YS+  DP +A+++F  M+ +G+S ++F+   VLKAC       E + +HGL  K+  GS
Sbjct: 62  GYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGS 121

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
            +F+QN LI++YV CG +  AR+LFD +  +  VS+NSMI GY   GN + A  LF  M 
Sbjct: 122 LVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKM- 180

Query: 213 IRERNL-------ISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGK 265
            RE  +       ++  SV +    L  G    + I     + D+I  N+++    KCG 
Sbjct: 181 -REWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGN 239

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
           +  AQA+FD+  +++VVSW +MI  YA+ G +++AR++FD+MP ++VV+ N+M+  Y+R 
Sbjct: 240 LHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLRE 299

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
           G   +AL++F+ M+    + PD+A+LV +L+A +QLG +  G  IH Y+     S  G +
Sbjct: 300 GQYREALDLFNKMRNSRVV-PDEATLVSILAACSQLGDLVMGKKIHNYI----LSNKGAY 354

Query: 386 GV----ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEME 441
           GV    +LIDMY+KCG +  A+ +F ++   ++  WN +I  LA+HG G  A  L  EM+
Sbjct: 355 GVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQ 414

Query: 442 RLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHI 501
                PD+IT TGLL+AC+H+GLV  GL  F+ M  I+++  E++HY CMVD+LGR G +
Sbjct: 415 ADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLL 474

Query: 502 EAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF 561
             A  LI  MPM+P+ V+W  LL ACR + N+ +G+ + K L+ ++  +   YVL+SN++
Sbjct: 475 GEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIY 534

Query: 562 AGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
                W D +++R +M +R +KK    S IE++G ++EF V DK       IY MLD +
Sbjct: 535 WEAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISSSIYAMLDQL 593


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 218/651 (33%), Positives = 347/651 (53%), Gaps = 81/651 (12%)

Query: 17  TLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L LL  CK+  ++ QIH+++I TG        +KL+   + SP   L+    Y    + 
Sbjct: 35  SLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLS----YALLLFE 90

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
           +  E+ + F+WN +I+  S    P  A+  +  ML  GV  + ++   +LK+C+++G  +
Sbjct: 91  SI-EQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQ 149

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           EG QIHG + K+   SD F+   LI++Y + G L +A  +F K  +RD+VS+ ++I GY 
Sbjct: 150 EGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYT 209

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
                                             L+  L  A ++FE++P RD +SWN+M
Sbjct: 210 ----------------------------------LRGCLDDARRLFEEIPVRDAVSWNAM 235

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVV--------------------------SWAN---- 286
           + G  + G+ ++A A F +M + +V                           SW      
Sbjct: 236 IAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGL 295

Query: 287 ---------MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
                    +ID Y+K G +D AR LF+ + ++D+++ N M+GGY       +AL +F  
Sbjct: 296 GSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRK 355

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL-NGKHGVALIDMYSKC 396
           MQ +  + P+D + V +L A A LG +D G  IH Y++K    L N     +LIDMY+KC
Sbjct: 356 MQ-QSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKC 414

Query: 397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLL 456
           G+IE A +VF  ++  S+  WNAMI+GLA+HG   +A +L  +M     EPDDITF G+L
Sbjct: 415 GNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVL 474

Query: 457 NACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPN 516
           +AC+HAGLV+ G  CF  M   + + P+LQHYGCM+D+LGRAG  + A  L+++M M+P+
Sbjct: 475 SACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPD 534

Query: 517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSM 576
             IW +LL ACR + N+ +GE  AKHL  ++  N  +YVLLSN++A  G W+D  R+R+ 
Sbjct: 535 GAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTK 594

Query: 577 MKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVA 627
           + ++ +KK     +  L+ +   F  R        ++ Y +D  W   S++
Sbjct: 595 LNDKGMKKXQDI-YKMLDEIDQSFGERPGXVPDTSEVLYDMDEEWKEGSLS 644


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 226/612 (36%), Positives = 351/612 (57%), Gaps = 13/612 (2%)

Query: 14  TQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFF 73
           +  TLL+L+ C ++  + QI A +  TG +      ++L+A F +   +    +A  IF 
Sbjct: 52  SNPTLLILQSCSSMFQLKQIQAHITCTGLMNQIFPASRLLA-FCALSDSGDIHYAHLIFD 110

Query: 74  KYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLG 133
           +     E  + F WN +IK Y     P      F  M+ N    D  S    LKAC +  
Sbjct: 111 Q----TELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFA 166

Query: 134 LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMID 193
               G+ +H ++ K  F SDLF+QN LI  YV  G L FARQ+FD+  ++D V++ +MI+
Sbjct: 167 EKIVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMIN 226

Query: 194 GYVKSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI 251
           GY ++  ++ A  LF+SM   +   N ++  ++L+  +Q K   +    + E +  +D+ 
Sbjct: 227 GYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQ-KGDSEMGKTLHEHIRRKDIT 285

Query: 252 S----WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
                 N+ML   VKCG +  A+ +F+ M +RDV SW ++++GYAK G +  AR+LFDEM
Sbjct: 286 CSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEM 345

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
           P+R++V+ NAM+ GY +N   M+ALE+F NM   + L P + +LV VLSA  QLG ++ G
Sbjct: 346 PERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMG 405

Query: 368 VAIH-RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
             IH  ++ K    ++     A++DMY+KCGSI+ A K+F  + + ++  WN+MI+  A 
Sbjct: 406 QEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYAS 465

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           +G  + A  L  +M    ++PD ITF G+L+AC++ G V EG   FE M     +EP+ +
Sbjct: 466 YGHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPKRE 525

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HY CMVD+L R G ++ A  LI  MPME ++  W  LL ACR + N+ + +   + L+ +
Sbjct: 526 HYACMVDLLSRVGLLKEAYELISRMPMEASEGGWGALLDACRKHGNVEMAKLAGEKLLEL 585

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           D  +S  Y LL+N+ A    W D R VR MM+ER +KK+PG S IE+EG  HEF V D S
Sbjct: 586 DPEDSGIYSLLANICADGKKWKDVRMVRRMMRERGVKKVPGHSLIEIEGKFHEFLVADTS 645

Query: 607 RLQVRDIYYMLD 618
             +  +IY +++
Sbjct: 646 HTRSSEIYRVVN 657


>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/546 (37%), Positives = 321/546 (58%), Gaps = 55/546 (10%)

Query: 118 DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQN-----CLISLYVRCGYLEF 172
           D  S + V+    + G+IEE         K  F  +  ++N      L+S YVR   +E 
Sbjct: 96  DVVSWTAVITGYIKCGMIEEA--------KTLFDRNDAIKNVVTWTALVSGYVRWNRIEE 147

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK 232
           AR+LFD M +++ +S+N+MI+GY + G I+ A +LF+ MP  ERN++SWN+V+  + Q +
Sbjct: 148 ARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEKMP--ERNVVSWNTVITAFMQRR 205

Query: 233 SGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYA 292
             +  A ++F +MPERD+ISW +M+ G  K G++DDA+ LFDKMP R+VVSW  MI GYA
Sbjct: 206 R-VDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYA 264

Query: 293 KLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNG---------YSM-------------- 329
           +  R+D A +LF++MP+R++ + N M+ G+++NG         Y M              
Sbjct: 265 QNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISG 324

Query: 330 --------KALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
                   +AL+IF  MQ    + P++ + V VL A ++L  + +G  IH+ + K  +  
Sbjct: 325 HVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQE 384

Query: 382 NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH-----WNAMINGLAIHGLGELAFDL 436
                 ALI+MYSKCG +E A K+F+   DGS+ H     WN MI   A HG G  A  L
Sbjct: 385 VADVVSALINMYSKCGELELARKIFD---DGSIGHRDVVSWNGMIAAYAHHGHGHKAISL 441

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
             EM+ L   PD++T+  LL+AC+HAGLV EGL  FE + R   ++    H+ C+VD+ G
Sbjct: 442 FDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFG 501

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556
           RAG ++ A + I+ + ++P+  +W  LL+ C  + ++++G+  A+ L+  +  N+ +Y++
Sbjct: 502 RAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAEKLLETEPENAGTYLV 561

Query: 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYM 616
           LSN++A  G W +A  VR  MK++ LKK PGCSWIE+   VH F V D S  +  +IY +
Sbjct: 562 LSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGNTVHVFVVGDNSHREFENIYLL 621

Query: 617 LDNMWT 622
           L ++ T
Sbjct: 622 LHDLHT 627



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 212/390 (54%), Gaps = 16/390 (4%)

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           +I   +R  +  S++   N LI+   + G +  ARQ+F++M  RD VS+ ++I GY+K G
Sbjct: 52  KISSPVRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCG 111

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
            IE A+ LFD      +N+++W ++++GY +    ++ A ++F+ MP +++ISWN+M+ G
Sbjct: 112 MIEEAKTLFDRNDAI-KNVVTWTALVSGYVRWNR-IEEARRLFDAMPVKNVISWNTMIEG 169

Query: 260 CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM 319
             + G +D A  LF+KMP+R+VVSW  +I  + +  RVD A+ LF+ MP+RDV++   M+
Sbjct: 170 YARKGWIDQALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMV 229

Query: 320 GGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL-EKDQ 378
            G  +NG    A  +FD M        +  S   ++   AQ   +D+   +   + E++ 
Sbjct: 230 AGLSKNGRIDDARLLFDKMPVR-----NVVSWNTMIIGYAQNMRLDEAFKLFEQMPEREL 284

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
            S N      +I  + + G +E A+  F ++ + +V  W A+I+G    G  E A  +  
Sbjct: 285 SSWN-----TMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFS 339

Query: 439 EMERL-SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
           EM+   +++P++ TF  +L AC+    + EG    +++ +    E        ++++  +
Sbjct: 340 EMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVA-DVVSALINMYSK 398

Query: 498 AGHIEAARNLIEDMPMEPNDVI-WRTLLSA 526
            G +E AR + +D  +   DV+ W  +++A
Sbjct: 399 CGELELARKIFDDGSIGHRDVVSWNGMIAA 428



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 24/177 (13%)

Query: 38  ITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHG 97
           + TGFI+N  L                 E A   F+K       K+   W A+I  +   
Sbjct: 290 MITGFIQNGKL-----------------ERAVDFFYKM----SNKNVVTWTAVISGHVQD 328

Query: 98  LDPKEALVMFCLM-LDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFL 156
              +EAL +F  M   N V  ++ +   VL ACS+L  + EG QIH ++ K  +     +
Sbjct: 329 GRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADV 388

Query: 157 QNCLISLYVRCGYLEFARQLFD--KMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
            + LI++Y +CG LE AR++FD   +G RD VS+N MI  Y   G+   A  LFD M
Sbjct: 389 VSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEM 445



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 16/218 (7%)

Query: 4   SANYNQPCNST-QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCT 62
           +AN  +P   T  S L    K   L +  QIH  +  T + +   + + L+  +S   C 
Sbjct: 343 AANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSK--CG 400

Query: 63  PLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSA 122
            L E AR IF         +D   WN +I  Y+H     +A+ +F  M   G   D  + 
Sbjct: 401 EL-ELARKIF--DDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTY 457

Query: 123 SLVLKACSRLGLIEEGLQIHGLL---RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK 179
             +L ACS  GL++EGL++   L   R +    D F   CL+ L+ R G L+ A      
Sbjct: 458 IALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHF--TCLVDLFGRAGRLQEAFDFIKG 515

Query: 180 MGIRDSVS-YNSMIDGYVKSGNIE----SARELFDSMP 212
           + ++ S S + +++ G    G+I+    +A +L ++ P
Sbjct: 516 LEVKPSASVWAALLAGCNVHGHIDLGKLTAEKLLETEP 553


>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/546 (37%), Positives = 321/546 (58%), Gaps = 55/546 (10%)

Query: 118 DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQN-----CLISLYVRCGYLEF 172
           D  S + V+    + G+IEE         K  F  +  ++N      L+S YVR   +E 
Sbjct: 96  DVVSWTAVITGYIKCGMIEEA--------KTLFDRNDAIKNVVTWTALVSGYVRWNRIEE 147

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK 232
           AR+LFD M +++ +S+N+MI+GY + G I+ A +LF+ MP  ERN++SWN+V+  + Q +
Sbjct: 148 ARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEXMP--ERNVVSWNTVITAFMQRR 205

Query: 233 SGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYA 292
             +  A ++F +MPERD+ISW +M+ G  K G++DDA+ LFDKMP R+VVSW  MI GYA
Sbjct: 206 R-VDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYA 264

Query: 293 KLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNG---------YSM-------------- 329
           +  R+D A +LF++MP+R++ + N M+ G+++NG         Y M              
Sbjct: 265 QNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISG 324

Query: 330 --------KALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
                   +AL+IF  MQ    + P++ + V VL A ++L  + +G  IH+ + K  +  
Sbjct: 325 HVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQE 384

Query: 382 NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH-----WNAMINGLAIHGLGELAFDL 436
                 ALI+MYSKCG +E A K+F+   DGS+ H     WN MI   A HG G  A  L
Sbjct: 385 VADVVSALINMYSKCGELELARKIFD---DGSIGHRDVVSWNGMIAAYAHHGHGHKAISL 441

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
             EM+ L   PD++T+  LL+AC+HAGLV EGL  FE + R   ++    H+ C+VD+ G
Sbjct: 442 FDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFG 501

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556
           RAG ++ A + I+ + ++P+  +W  LL+ C  + ++++G+  A+ L+  +  N+ +Y++
Sbjct: 502 RAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAEKLLETEPENAGTYLV 561

Query: 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYM 616
           LSN++A  G W +A  VR  MK++ LKK PGCSWIE+   VH F V D S  +  +IY +
Sbjct: 562 LSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGNTVHVFVVGDNSHREFENIYLL 621

Query: 617 LDNMWT 622
           L ++ T
Sbjct: 622 LHDLHT 627



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 211/390 (54%), Gaps = 16/390 (4%)

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           +I   +R  +  S++   N LI+   + G +  ARQ+F++M  RD VS+ ++I GY+K G
Sbjct: 52  KISSPVRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCG 111

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
            IE A+ LFD      +N+++W ++++GY +    ++ A ++F+ MP +++ISWN+M+ G
Sbjct: 112 MIEEAKTLFDRNDAI-KNVVTWTALVSGYVRWNR-IEEARRLFDAMPVKNVISWNTMIEG 169

Query: 260 CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM 319
             + G +D A  LF+ MP+R+VVSW  +I  + +  RVD A+ LF+ MP+RDV++   M+
Sbjct: 170 YARKGWIDQALDLFEXMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMV 229

Query: 320 GGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL-EKDQ 378
            G  +NG    A  +FD M        +  S   ++   AQ   +D+   +   + E++ 
Sbjct: 230 AGLSKNGRIDDARLLFDKMPVR-----NVVSWNTMIIGYAQNMRLDEAFKLFEQMPEREL 284

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
            S N      +I  + + G +E A+  F ++ + +V  W A+I+G    G  E A  +  
Sbjct: 285 SSWN-----TMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFS 339

Query: 439 EMERL-SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
           EM+   +++P++ TF  +L AC+    + EG    +++ +    E        ++++  +
Sbjct: 340 EMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVA-DVVSALINMYSK 398

Query: 498 AGHIEAARNLIEDMPMEPNDVI-WRTLLSA 526
            G +E AR + +D  +   DV+ W  +++A
Sbjct: 399 CGELELARKIFDDGSIGHRDVVSWNGMIAA 428



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 24/177 (13%)

Query: 38  ITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHG 97
           + TGFI+N  L                 E A   F+K       K+   W A+I  +   
Sbjct: 290 MITGFIQNGKL-----------------ERAVDFFYKM----SNKNVVTWTAVISGHVQD 328

Query: 98  LDPKEALVMFCLM-LDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFL 156
              +EAL +F  M   N V  ++ +   VL ACS+L  + EG QIH ++ K  +     +
Sbjct: 329 GRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADV 388

Query: 157 QNCLISLYVRCGYLEFARQLFD--KMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
            + LI++Y +CG LE AR++FD   +G RD VS+N MI  Y   G+   A  LFD M
Sbjct: 389 VSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEM 445



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 16/218 (7%)

Query: 4   SANYNQPCNST-QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCT 62
           +AN  +P   T  S L    K   L +  QIH  +  T + +   + + L+  +S   C 
Sbjct: 343 AANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSK--CG 400

Query: 63  PLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSA 122
            L E AR IF         +D   WN +I  Y+H     +A+ +F  M   G   D  + 
Sbjct: 401 EL-ELARKIF--DDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTY 457

Query: 123 SLVLKACSRLGLIEEGLQIHGLL---RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK 179
             +L ACS  GL++EGL++   L   R +    D F   CL+ L+ R G L+ A      
Sbjct: 458 IALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHF--TCLVDLFGRAGRLQEAFDFIKG 515

Query: 180 MGIRDSVS-YNSMIDGYVKSGNIE----SARELFDSMP 212
           + ++ S S + +++ G    G+I+    +A +L ++ P
Sbjct: 516 LEVKPSASVWAALLAGCNVHGHIDLGKLTAEKLLETEP 553


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/620 (34%), Positives = 350/620 (56%), Gaps = 51/620 (8%)

Query: 11  CNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY 70
           C    S   L   C +++   Q HA ++ T  + N   ++KL++  + S    L  +AR 
Sbjct: 8   CTKLISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLN-YARK 66

Query: 71  IFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS 130
           +F +     +  DPF+ N +I+ Y+   +P EA+ ++  M++ GV VD ++   VL AC+
Sbjct: 67  LFTQM----QNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACA 122

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
           RLG ++ G + H  + K  FGSDLF+ N LI  Y  CG    A  +FD+  +        
Sbjct: 123 RLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTV-------- 174

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPE-- 247
                                    R++++WN ++N  A L  GL + A+ + ++M +  
Sbjct: 175 -------------------------RDVVTWNIMIN--AHLNKGLSEKAFDLLDEMTKLD 207

Query: 248 ---RDLISWNSMLHGCVKCGKMDDAQAL--FDKMPKRDVVSWAN--MIDGYAKLGRVDIA 300
               D ++  S++  C + G ++  + L  + K    D     N  ++D Y K   ++ A
Sbjct: 208 NLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESA 267

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
           + +F+ + ++DV++  +M+ G  ++GY  +AL +F  MQ    +  D+ +LV VLSA AQ
Sbjct: 268 QEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLN-KIELDEITLVGVLSACAQ 326

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
            G +D+G  IH  ++K + + +     AL+DMY+KCGSI+ A++VF ++   +V  WNA+
Sbjct: 327 TGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAL 386

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           I GLA+HG GE A  L  +ME   + PDD+TF  LL AC+HAGLV EGL  F+ M+   +
Sbjct: 387 IGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQ 446

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           +EP ++HYGC+VD+L RA  ++ A   IE+MP++ N V+W TLL ACR+  + ++ E + 
Sbjct: 447 IEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIG 506

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
           + +I ++  +   YV+LSN++AG+  W+ A ++R  MK + ++K PGCSWIEL G++H+F
Sbjct: 507 RRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQF 566

Query: 601 FVRDKSRLQVRDIYYMLDNM 620
              D+S LQ   IY M++ M
Sbjct: 567 VAGDRSHLQTEQIYAMIEEM 586


>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 629

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/608 (35%), Positives = 341/608 (56%), Gaps = 48/608 (7%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L KC  LN V Q+HA++I     ++ H+  KL+++ S           R        F +
Sbjct: 26  LPKCANLNQVKQLHAQIIRRNLHQDLHIAPKLISALS---------LCRQTNLALRVFNQ 76

Query: 81  KKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
            ++P   L N++I+ ++    P +A  +F  M   G+  D F+   +LKACS L  +   
Sbjct: 77  VQEPNVHLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLPVV 136

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
             +H  + K+   SD+++ N LI  Y RCG L          G+RD              
Sbjct: 137 KMMHNHIEKLGLSSDIYVPNALIDCYSRCGGL----------GVRD-------------- 172

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSML 257
                A +LF+ M   ER+ +SWNS+L G   +K+G L+ A ++F++MP+RDLISWN+ML
Sbjct: 173 -----AMKLFEKM--SERDTVSWNSMLGGL--VKAGELRDARKLFDEMPQRDLISWNTML 223

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP--KRDVVAC 315
            G  +C +M  A  LF+KMP+R+ VSW+ M+ GY+K G +++AR +FD+MP   ++VV  
Sbjct: 224 DGYARCREMSRAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPFPAKNVVTW 283

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
             ++ GY   G   +A ++ D M     L  D A+ + +L+A A+ G +  G+  H  ++
Sbjct: 284 TIIIAGYAEKGLLKEADKLVDQMVAS-GLRFDAAAAISILAACAESGLLSLGMRAHSIIK 342

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           K   + N     AL+DMY+KCGS++ A  VF  +    +  WN M++GL +HG G+ A +
Sbjct: 343 KSNLNSNASVLNALLDMYAKCGSLKKAFDVFNDMPKKDLVSWNTMLHGLGVHGHGKEAIE 402

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           L   M +  I PD +TF  +L +C HAGL+ EG+  F  M +++ L P+++HYGC+VD+L
Sbjct: 403 LFSRMRKEGIWPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPKVEHYGCLVDLL 462

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           GR G ++ A  +++ MPMEPN VIW  LL ACR +  +++ + V  +L+ +D S+  +Y 
Sbjct: 463 GRGGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPSDPGNYT 522

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY 615
           LLSN++A    W     +RS MK   ++K  G S +ELE  +HEF V DKS  +   IY 
Sbjct: 523 LLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQ 582

Query: 616 MLDNMWTP 623
           ML ++  P
Sbjct: 583 MLGSLIEP 590


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/530 (38%), Positives = 321/530 (60%), Gaps = 32/530 (6%)

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA 149
           +++ YSH  D  + ++M+  M   GV  D F   +++K+         G+  H  + K+ 
Sbjct: 1   MLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAG-----TGGIGFHAHVLKLG 55

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD 209
            GSD F++N +I +Y        AR++ D         +N+M+ GY K  +   A+ LFD
Sbjct: 56  HGSDAFVRNAVIDMY--------ARKVAD---------WNAMVSGYWKWESEGQAQWLFD 98

Query: 210 SMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDA 269
            MP  ERN+I+W +++ GYA++K  L+ A + F+ MPER ++SWN+ML G  + G  ++A
Sbjct: 99  VMP--ERNVITWTAMVTGYAKVKD-LEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEA 155

Query: 270 QALFDKM--PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGY 327
             LFD+M    R+ V+W  MI  Y ++G +D AR+LF+ MP R+VV  N+M+ GY +NG 
Sbjct: 156 LRLFDEMLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQ 215

Query: 328 SMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV 387
           S  A+E+F  M     L PD+ ++V V+SA   LG ++ G  + R+L ++Q  L+     
Sbjct: 216 SAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHN 275

Query: 388 ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP 447
           A+I MYS+CGS+E+A +VF+++    V  +N +I+G A HG G  A +L+  M+   IEP
Sbjct: 276 AMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEP 335

Query: 448 DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNL 507
           D +TF G+L AC+HAGL++EG   FE ++     +P + HY CMVD+LGR G +E A+  
Sbjct: 336 DRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDHYACMVDLLGRVGELEDAKRT 390

Query: 508 IEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMW 567
           +E MPMEP+  ++ +LL+A R ++ + +GE  A  L  ++  NS +++LLSN++A  G W
Sbjct: 391 MERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRW 450

Query: 568 NDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
            D  R+R  MK+  +KK  G SW+E  G +H+F V D+S  +  DIY +L
Sbjct: 451 KDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLL 500



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 171/402 (42%), Gaps = 89/402 (22%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           WNA++  Y+     +EAL +F  ML                               G  R
Sbjct: 139 WNAMLSGYAQNGLAEEALRLFDEML-------------------------------GAYR 167

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
                 +    N +IS Y+R G L+ AR+LF+ M  R+ V++NSMI GY ++G    A E
Sbjct: 168 ------NSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIE 221

Query: 207 LFDSMPIRER------NLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
           LF  M   ++       ++S  S       L+ G      + E   +  +   N+M+   
Sbjct: 222 LFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMY 281

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
            +CG M+DA+ +F +M  RDVVS+  +I G+A                            
Sbjct: 282 SRCGSMEDAKRVFQEMATRDVVSYNTLISGFAA--------------------------- 314

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
               +G+ ++A+ +   M+ E  + PD  + + VL+A +  G +++G  +   ++     
Sbjct: 315 ----HGHGVEAINLMSTMK-EGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAID 369

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHG---LGELAFDL 436
               H   ++D+  + G +E+A +  E++  +     + +++N   IH    LGELA + 
Sbjct: 370 ----HYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANK 425

Query: 437 LMEMERLSIEPDDI-TFTGLLNACAHAGLVKEGLLCFELMRR 477
           L E+     EPD+   F  L N  A AG  K+     E M++
Sbjct: 426 LFEL-----EPDNSGNFILLSNIYASAGRWKDVERIREAMKK 462



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 16/170 (9%)

Query: 56  FSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGV 115
           F  S C  + +  R   F+  A R   D   +N +I  ++      EA+ +   M + G+
Sbjct: 279 FMYSRCGSMEDAKR--VFQEMATR---DVVSYNTLISGFAAHGHGVEAINLMSTMKEGGI 333

Query: 116 SVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQ 175
             D+ +   VL ACS  GL+EEG ++   ++  A   D +   C++ L  R G LE A++
Sbjct: 334 EPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAI--DHYA--CMVDLLGRVGELEDAKR 389

Query: 176 LFDKM------GIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLI 219
             ++M      G+  S+   S I   V+ G + +A +LF+  P    N I
Sbjct: 390 TMERMPMEPHAGVYGSLLNASRIHKQVELGEL-AANKLFELEPDNSGNFI 438


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 225/614 (36%), Positives = 346/614 (56%), Gaps = 33/614 (5%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LL     +N + QI A +I    IK   LT   +    ++      ++AR +F +     
Sbjct: 8   LLHCSLPINQLKQIQALII----IKYLSLTPLFIRRLLNAS---FIQYARQVFDQI---- 56

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
              D  +  + I  YS      EAL  F  M  N V +  F+   + K+C+ L  I+ G 
Sbjct: 57  PHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGK 116

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           Q+H L+ +  F S +F QN LI+ Y +   L  A  +FD + ++D+++YN +I  Y +SG
Sbjct: 117 QVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSG 176

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLISWNS 255
            + +ARELFD M  R+R+++SWN++++ YAQ        W IF++M     E + I+  +
Sbjct: 177 EVLAARELFDKM--RDRSIVSWNAMISCYAQ-NGDYHKGWIIFQRMQDEMCEPNEITLAT 233

Query: 256 MLHGCVKCG---------KMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
           +L  C K G         K++D + L   M    +VS A M++ Y K G VD  R +FD 
Sbjct: 234 VLSICAKLGDLEMGLRIKKLNDNKNLGSNM----IVSTA-MLEMYVKCGAVDDGRLVFDH 288

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           M +RDVV  +AM+ GY +NG S +ALE+F+NM+    + P+D +LV VLSA AQLG ++ 
Sbjct: 289 MARRDVVTWSAMIAGYAQNGRSNEALELFENMKSA-QIKPNDVTLVSVLSACAQLGSVET 347

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G  I  Y+E      N     AL+ MYSKCG+I  A ++F+++       WN+MI GLAI
Sbjct: 348 GERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAI 407

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           +G  E A  L   M+ + ++P++ITF GL+ AC HAG V+ GL  F  MR  H + P ++
Sbjct: 408 NGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIE 467

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           H+ C+VD+  R+G +  A   I  M +EPN VIW TLLSA R + N+ + E   K L+ +
Sbjct: 468 HFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVELAELAGKKLLEL 527

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           +  NS +YV+LSN++A  G W +A +VR +MK++ ++K    SW+E+E  VH+F V D S
Sbjct: 528 EPDNSGNYVILSNIYASAGRWQEALKVRKLMKDKRVQKAAAYSWVEVEDRVHKFLVGDTS 587

Query: 607 RLQVRDIYYMLDNM 620
             +  ++Y  +D +
Sbjct: 588 HPRSDEVYSTIDGL 601


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 221/637 (34%), Positives = 351/637 (55%), Gaps = 40/637 (6%)

Query: 20  LLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTE------FARY 70
           LL +C   ++  D +++HA +I + F   T +  +L+  +    C  +          R 
Sbjct: 25  LLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERN 84

Query: 71  IFF----------------KYHAFRE--KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLD 112
           IF                   H F +  + D   WN++I  +       EALV F  M  
Sbjct: 85  IFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHG 144

Query: 113 NGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF 172
           +G  V+++S    L AC+ L  ++ G QIH L+ +  + SD+++ + L+ +Y +CG +E+
Sbjct: 145 HGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEY 204

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM-----PIRERNLISWNSVLNG 227
           A+ +FD+M +R  VS+NS+I  Y ++G ++ A ++F  M        E  L S  S    
Sbjct: 205 AQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACAT 264

Query: 228 YAQLKSGLQFAWQIFEKMPER-DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN 286
            + +K G Q   ++ +    R DLI  N++L    KC ++++A+ +FD MP R VVS  +
Sbjct: 265 ISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETS 324

Query: 287 MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP 346
           M+ GYAK  +V +AR +F  M  +DV+  NA++ G  +NG + +AL +F  ++ E  + P
Sbjct: 325 MVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRE-SVWP 383

Query: 347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH------GVALIDMYSKCGSIE 400
              +   +L+A A L  +  G   H ++ K  F            G +LIDMY KCGS+E
Sbjct: 384 THYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVE 443

Query: 401 NAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460
           N  +VF+ + +     WNAMI G A +G G  A ++  +M      PD +T  G+L AC+
Sbjct: 444 NGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACS 503

Query: 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIW 520
           HAGL+ EG   F  M   H L P   HY CMVD+LGRAG++E A+NLIE+M M+P+ ++W
Sbjct: 504 HAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVW 563

Query: 521 RTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580
            +LL+AC+ + N+ +GE V K L+ +D  NS  YVLLSNM+A    W +  RVR +M++R
Sbjct: 564 GSLLAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQR 623

Query: 581 NLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
            + K PGCSWIE++G ++ F V+DK   + ++IY +L
Sbjct: 624 GVVKQPGCSWIEIQGELNVFMVKDKRHARKKEIYMVL 660



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 139/484 (28%), Positives = 239/484 (49%), Gaps = 36/484 (7%)

Query: 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQL 176
           +D    S +L  C+R     +  ++H  + K  F S+ F+QN LI +Y +CG ++ AR+L
Sbjct: 17  LDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKL 76

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQ 236
           FD+M  R+  S+NS+I  + KSG ++ A  +F+ MP  + +  SWNS+++G+ Q      
Sbjct: 77  FDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMP--QVDQCSWNSMISGFEQ-HGRFD 133

Query: 237 FAWQIFEKMPERDLI----SWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMI 288
            A   F +M     +    S+ S L  C     +     +   + +     DV   + ++
Sbjct: 134 EALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALV 193

Query: 289 DGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD 348
           D Y+K GRV+ A+ +FDEM  R  V+ N+++  Y +NG   +AL+IF  M  +  + PD+
Sbjct: 194 DMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEM-IKCGVEPDE 252

Query: 349 ASLVIVLSAIAQLGHIDKGVAIH-RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFE 407
            +L  V+SA A +  I +G  IH R ++ D+F  +   G AL+DMY+KC  I  A  +F+
Sbjct: 253 VTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFD 312

Query: 408 QIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKE 467
            +   SV    +M++G A     ++A  +   M    +  D IT+  L+  C   G  +E
Sbjct: 313 MMPIRSVVSETSMVSGYAKASKVKVARYMFSNM----MVKDVITWNALIAGCTQNGENEE 368

Query: 468 GLLCFELMRRIHKLEPELQHYGCMVDI--------LGRAGHIEAARNLIEDMPMEPNDV- 518
            L+ F L++R   + P    +G +++         LGR  H    ++       E +DV 
Sbjct: 369 ALILFRLLKR-ESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVF 427

Query: 519 IWRTLLS---ACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRS 575
           +  +L+     C + EN   G  V +H++  D  + ++ ++    +A  G  N A  V  
Sbjct: 428 VGNSLIDMYMKCGSVEN---GCRVFQHMLEKDCVSWNAMIV---GYAQNGFGNKALEVFC 481

Query: 576 MMKE 579
            M E
Sbjct: 482 KMLE 485


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/616 (34%), Positives = 335/616 (54%), Gaps = 40/616 (6%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
            S L    KC T + +NQ  + +IT+G   +T   + L+ S +      L  F R     
Sbjct: 9   HSILCCFHKCGTFDHLNQTTSILITSGLAHHTFFLSDLLRSATKDLGYTLLLFDRL---- 64

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
                     FLWN I++++S    P+  LV +  + ++GV  D+ +  L+LKA S+L  
Sbjct: 65  -----ATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLR- 118

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
            E   Q +  + K     D F+QN L+S +  CGY++ +R+LF +   +D VS+ ++I+G
Sbjct: 119 NENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALING 178

Query: 195 YVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLIS 252
            +++G    A E F  M     E + ++  SVL   A L+  + F   +     E   + 
Sbjct: 179 CLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRD-VWFGRWVHGFYVESGRVI 237

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
           W                          DV   + ++D Y+K G  D A ++F+EMP R++
Sbjct: 238 W--------------------------DVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNL 271

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           V+  A++ GYV+     +AL++F  M  E  + P+ +++   L+A AQLG +D+G  +H 
Sbjct: 272 VSWGALIAGYVQCNRYKEALKVFQEMIIE-GIEPNQSTVTSALTACAQLGSLDQGRWLHE 330

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
           Y+++ +  LN K G AL+DMYSKCG ++ A+ VFE++    V  W AMINGLA+ G    
Sbjct: 331 YVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALS 390

Query: 433 AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV 492
           + +L  +M R  ++P+ +TF G+L+ACAH GLV EGL  F LM   ++LEP + HYGCMV
Sbjct: 391 SLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMV 450

Query: 493 DILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552
           D+LGRAG +E A   IE MPMEP   +W  L S C  ++   +GE +  HLI +   +S 
Sbjct: 451 DLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSG 510

Query: 553 SYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRD 612
            Y+LL+N+++    W  A  VR +MK + + K P CSWIE+ GV+HEF   DKS ++  +
Sbjct: 511 RYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPACSWIEVNGVIHEFIAFDKSHIESIN 570

Query: 613 IYYMLDNMWTPDSVAT 628
           +Y ML ++     +AT
Sbjct: 571 VYMMLGSVTAQLKLAT 586


>gi|147828480|emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera]
          Length = 841

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/568 (36%), Positives = 329/568 (57%), Gaps = 16/568 (2%)

Query: 19  LLLRKCKTLN----DVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
           +L+ K  T++       Q+HA ++  G    +HL   L      S        A+Y+   
Sbjct: 1   MLISKLSTISLSVKQAKQVHALILIHGL---SHLEPILARQILJSASNYSATVAQYVHSV 57

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
            H   +  D F W   I+  +     KEA  ++  M   G+    F+ S  LKAC+R+  
Sbjct: 58  LH-HSKSPDSFSWACAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAY 116

Query: 135 IEEGLQIHGLLRKVAF---GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
              GL IHG ++K  F   G  ++++  L+  Y + G +E AR++FD+M  R+ VS+NSM
Sbjct: 117 RMGGLSIHGQVQKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSM 176

Query: 192 IDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI 251
           + GY+KSG++  A+ +FD +P  ++++ISWNS+++GYA+    ++ A  +F++MPER+  
Sbjct: 177 LAGYLKSGDLVVAQRVFDEIP--QKDVISWNSMISGYAR-AGDMEKALSLFQQMPERNFA 233

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           SWN+M+ G V+ G +D A++ FD MP+ + VSW  MI GY+K G VD A  LFD++  +D
Sbjct: 234 SWNAMISGYVEFGDIDSARSFFDAMPQXNNVSWMTMISGYSKCGDVDSACELFDQVGGKD 293

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
           ++  NAM+  Y +N    +AL++F+NM   ++ + PD+ +L  V+SA +QLG +  G  I
Sbjct: 294 LLLFNAMIACYAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWI 353

Query: 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
             Y+ +    ++G    AL+D+Y+KCGSI+ A ++F  +    +  + AMI G  I+G  
Sbjct: 354 ESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKA 413

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
             A  L  EM    I P+ ITF GLL A  HAGLV+EG  CF  M++ + L P + HYG 
Sbjct: 414 IDAIKLFDEMVDAQIFPNLITFIGLLTAYNHAGLVEEGYRCFTSMKK-YNLVPSVDHYGI 472

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           MVD+LGRAG ++ A  LI+ MPM+P+  +W  LL ACR + N+  GE  A+H   ++   
Sbjct: 473 MVDLLGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDT 532

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMK 578
           +    LLSN++A    W+D +R+R   K
Sbjct: 533 TGYXSLLSNIYASGERWDDVKRLRKSPK 560


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 221/644 (34%), Positives = 350/644 (54%), Gaps = 78/644 (12%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           L LL KCK +N   QIH+ +I TG      + +KL+   + SP   L+ +A  +F + + 
Sbjct: 32  LNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLS-YALSLF-EENQ 89

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
              K + F+WN++I+ YS    P  +L +F  ML  GV  +  +   + K+C++     E
Sbjct: 90  QHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHE 149

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G Q+H    K+A   +  +   +I +Y   G ++FAR +FDK  +RD+VS+ ++I GYV 
Sbjct: 150 GKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVS 209

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
            G ++ AR                                  ++F+++P +D++SWN+M+
Sbjct: 210 QGCLDDAR----------------------------------RLFDEIPVKDVVSWNAMI 235

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVV--------------------------SWAN----- 286
            G V+ G+ ++A   F +M + +V+                          SW       
Sbjct: 236 SGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFG 295

Query: 287 --------MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM 338
                   +ID Y K G  DIAR LFD + ++DV++ N M+GGY       +AL +F+ M
Sbjct: 296 SNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVM 355

Query: 339 QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD-QFSLNGKHGVALIDMYSKCG 397
                + P+D + + +L A A LG +D G  +H Y++K+ + S N     +LIDMY+KCG
Sbjct: 356 -LRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCG 414

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI-EPDDITFTGLL 456
            IE A +VF  +   ++  WNAM++G A+HG  E A  L  EM    +  PDDITF G+L
Sbjct: 415 CIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVL 474

Query: 457 NACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPN 516
           +AC  AGLV  G   F  M + + + P+LQHYGCM+D+L RA   E A  L+++M MEP+
Sbjct: 475 SACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPD 534

Query: 517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSM 576
             IW +LLSAC+ +  +  GE VA+ L  ++  N+ ++VLLSN++AG G W+D  R+R+ 
Sbjct: 535 GAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTR 594

Query: 577 MKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           + ++ +KK+PGC+ IE++G VHEF V DK   +  +IY ML+ +
Sbjct: 595 LNDKGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEV 638


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 220/628 (35%), Positives = 351/628 (55%), Gaps = 43/628 (6%)

Query: 30  VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA------------ 77
           V  +HA +I +GF     +  +L+ ++S   C  L E  R +F K               
Sbjct: 39  VRYVHASVIKSGFSNEIFIQNRLIDAYSK--CGSL-EDGRQVFDKMPQRNIYTWNSVVTG 95

Query: 78  -------------FRE--KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSA 122
                        FR   ++D   WN+++  ++     +EAL  F +M   G  ++++S 
Sbjct: 96  LTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSF 155

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI 182
           + VL ACS L  + +G+Q+H L+ K  F SD+++ + L+ +Y +CG +  A+++FD+MG 
Sbjct: 156 ASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGD 215

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSM--PIRERNLISWNSVLNGYAQL---KSGLQF 237
           R+ VS+NS+I  + ++G    A ++F  M     E + ++  SV++  A L   K G + 
Sbjct: 216 RNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEV 275

Query: 238 AWQIFEKMPER-DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR 296
             ++ +    R D+I  N+ +    KC ++ +A+ +FD MP R+V++  +MI GYA    
Sbjct: 276 HGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAAS 335

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
              AR +F +M +R+VV+ NA++ GY +NG + +AL +F  ++ E  + P   S   +L 
Sbjct: 336 TKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRE-SVCPTHYSFANILK 394

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKH------GVALIDMYSKCGSIENAIKVFEQIE 410
           A A L  +  G+  H ++ K  F            G +LIDMY KCG +E    VF ++ 
Sbjct: 395 ACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMM 454

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470
           +     WNAMI G A +G G  A +L  EM     +PD IT  G+L+AC HAG V+EG  
Sbjct: 455 ERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRH 514

Query: 471 CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNY 530
            F  M R   + P   HY CMVD+LGRAG +E A+++IE+MPM+P+ VIW +LL+AC+ +
Sbjct: 515 YFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVH 574

Query: 531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSW 590
            N+ +G+ VA+ L+ ++ SNS  YVLLSNM+A LG W D   VR  M++  + K PGCSW
Sbjct: 575 RNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSW 634

Query: 591 IELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           I+++G  H F V+DKS  + + I+ +LD
Sbjct: 635 IKIQGHDHVFMVKDKSHPRKKQIHSLLD 662


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/548 (36%), Positives = 325/548 (59%), Gaps = 14/548 (2%)

Query: 78  FREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
           F   ++P   +WN + + ++   D   AL ++  M+  G+  + +S   +LK+C++   +
Sbjct: 22  FETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSKAL 81

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
            EG QIHG + K+ +  D+++   LIS+Y + G LE A ++FD+   R  VSY ++I GY
Sbjct: 82  IEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGY 141

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLIS 252
              G I +AR+LFD + +++  ++SWN++++GY +    K  L+    + +   + D  +
Sbjct: 142 ASRGYINNARKLFDEISVKD--VVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDEST 199

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN----MIDGYAKLGRVDIARRLFDEMP 308
             +++  C + G ++  + L   +      S       +ID Y+K G V+ A  LF  + 
Sbjct: 200 MVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLA 259

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
           K+DV++ N ++GG+       +AL +F  M       P+D +++ VL A A LG ID G 
Sbjct: 260 KKDVISWNTLIGGHTHMNLYKEALLLFQEM-LRSGESPNDVTMLSVLPACAHLGAIDIGR 318

Query: 369 AIHRYLEKDQFSLNGKHGV--ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
            IH Y+ K    +     +  +LIDMY+KCG IE A +VF+ +   S+  WNAMI G A+
Sbjct: 319 WIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAM 378

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           HG    AFDL  +M +  I+PDDITF GLL+AC+H+G++  G   F  M + +K+ P+L+
Sbjct: 379 HGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLE 438

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HYGCM+D+LG  G  + A+ +I  MPMEP+ VIW +LL AC+ + N+ +GE  A++LI +
Sbjct: 439 HYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKI 498

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           +  N  SYVLLSN++A  G W+   ++R+++ ++ +KK PGCS IE++ VVHEF + DK 
Sbjct: 499 EPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDKF 558

Query: 607 RLQVRDIY 614
             + R+IY
Sbjct: 559 HPRNREIY 566



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 175/415 (42%), Gaps = 106/415 (25%)

Query: 234 GLQFAWQIFEKMPERDLISWNSMLHG---------------------------------- 259
           GL +A  IFE + E +L+ WN+M  G                                  
Sbjct: 14  GLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLK 73

Query: 260 -CVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGR------------------ 296
            C K   + + Q +   + K     D+    ++I  YA+ GR                  
Sbjct: 74  SCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVS 133

Query: 297 -------------VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELY 343
                        ++ AR+LFDE+  +DVV+ NAM+ GYV      +ALE++ +M  +  
Sbjct: 134 YTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMM-KTN 192

Query: 344 LHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAI 403
           + PD++++V V+SA AQ G I+ G  +H ++E   F  N K    LID+YSKCG +E A 
Sbjct: 193 VKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETAC 252

Query: 404 KVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAG 463
            +F+ +    V  WN +I G     L + A  L  EM R    P+D+T   +L ACAH G
Sbjct: 253 GLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLG 312

Query: 464 LVKEG-LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM----------- 511
            +  G  +   + +R+  +         ++D+  + G IEAA+ + + M           
Sbjct: 313 AIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAM 372

Query: 512 -----------------------PMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
                                   ++P+D+ +  LLSAC +   L++G  + + +
Sbjct: 373 IFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSM 427


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 218/672 (32%), Positives = 356/672 (52%), Gaps = 80/672 (11%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LL+ CK      Q+ ++ I TG I + +  ++L+ +FSS   T L  F     +    F 
Sbjct: 9   LLQSCKCPRHFKQLLSQTILTGLITDPYAASRLI-NFSSHS-TTLVPF----HYSLRIFN 62

Query: 80  EKKDP--FLWNAIIKTYSHGLD-PKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
             ++P  F WN I++ + +  + P +AL+ + L L +    D ++  ++L+ C+      
Sbjct: 63  HLRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEF 122

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           EG Q+H       F  D++++N L++LY  CG +  AR++F++  + D VS+N+++ GYV
Sbjct: 123 EGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYV 182

Query: 197 KSGNIESARELFDSMPIR-------------------------------ERNLISWNSVL 225
           ++G +E A  +F+ MP R                               ER+++SW++++
Sbjct: 183 QAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMV 242

Query: 226 NGYAQLKSGLQFAWQIFE-------------------------------------KMPER 248
           + Y Q + G +      E                                     K+   
Sbjct: 243 SCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVE 302

Query: 249 DLISW-NSMLHGCVKCGKMDDAQALFDKMPKR-DVVSWANMIDGYAKLGRVDIARRLFDE 306
           D +S  N+++H    CG++ DA+ +FD   +  D++SW +MI GY + G +  A  LF  
Sbjct: 303 DYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYS 362

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           MP++DVV+ +AM+ GY ++    +AL +F  MQ    + PD+ +LV  +SA   L  +D 
Sbjct: 363 MPEKDVVSWSAMISGYAQHECFSEALALFQEMQLH-GVRPDETALVSAISACTHLATLDL 421

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G  IH Y+ +++  +N      LIDMY KCG +ENA++VF  +E+  V  WNA+I GLA+
Sbjct: 422 GKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAM 481

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           +G  E + ++  +M++    P++ITF G+L AC H GLV +G   F  M   HK+E  ++
Sbjct: 482 NGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIK 541

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HYGCMVD+LGRAG ++ A  LI+ MPM P+   W  LL ACR + +  +GE + + LI +
Sbjct: 542 HYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQL 601

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
              +   +VLLSN++A  G W +   +R +M +  + K PGCS IE  G VHEF   DK+
Sbjct: 602 QPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKT 661

Query: 607 RLQVRDIYYMLD 618
             Q+ DI +MLD
Sbjct: 662 HPQINDIEHMLD 673


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/616 (34%), Positives = 334/616 (54%), Gaps = 40/616 (6%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
            S L    KC T + + Q  + +IT+G   +T   + ++ S +      L  F R     
Sbjct: 9   HSILCCFHKCGTFDHLKQTTSILITSGLAHHTFFLSDILRSATKDLGYTLLLFDRL---- 64

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
                     FLWN II+ +S    P+  LV +  + ++GV  D+ +  L+LKA S+L  
Sbjct: 65  -----ATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKL-R 118

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
            E   Q +  + K     D F+QN L+S +  CGY++ +R+LF +   +D VS+ ++I+G
Sbjct: 119 NENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALING 178

Query: 195 YVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLIS 252
            +++G    A E F  M     E + ++  SVL   A L+  + F   +     E   + 
Sbjct: 179 CLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRD-VWFGRWVHGFYVESGRVI 237

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
           W                          DV   + ++D Y+K G  D A ++F+EMP R++
Sbjct: 238 W--------------------------DVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNL 271

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           V+  A++ GYV+     +AL++F  M  E  + P+ +++   L+A AQLG +D+G  +H 
Sbjct: 272 VSWGALIAGYVQCNRYKEALKVFQEMIIE-GIEPNQSTVTSALTACAQLGSLDQGRWLHE 330

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
           Y+++ +  LN K G AL+DMYSKCG ++ A+ VFE++    V  W AMINGLA+ G    
Sbjct: 331 YVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALS 390

Query: 433 AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV 492
           + +L  +M R  ++P+ +TF G+L+ACAH GLV EGL  F LM   ++LEP + HYGCMV
Sbjct: 391 SLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMV 450

Query: 493 DILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552
           D+LGRAG +E A   IE MPMEP   +W  L S C  ++   +GE +  HLI +   +S 
Sbjct: 451 DLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSG 510

Query: 553 SYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRD 612
            Y+LL+N+++    W  A  VR +MK + + K PGCSWIE+ GV+HEF   DKS  +  +
Sbjct: 511 RYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPGCSWIEVNGVIHEFIAFDKSHTESIN 570

Query: 613 IYYMLDNMWTPDSVAT 628
           +Y ML+++     +AT
Sbjct: 571 VYMMLESVSAQLKLAT 586


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 224/639 (35%), Positives = 349/639 (54%), Gaps = 43/639 (6%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF----- 72
           L L  K ++  D   +H R+I T F +   +  +L+  +    C  L ++AR +F     
Sbjct: 31  LDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGK--CGYL-DYARKVFDRMSE 87

Query: 73  ---FKYHA-------------------FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLM 110
              F +++                      +KD   WN++I  ++     +EAL  F  M
Sbjct: 88  RNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRM 147

Query: 111 LDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYL 170
             +   ++ +S    L ACSRL  ++ G QIHGL+ K  +  D+F+ + LI  Y +CG +
Sbjct: 148 HRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLV 207

Query: 171 EFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP-----IRERNLISWNSVL 225
             AR++FD M  ++ VS+N +I  Y ++G    A E F  M        E  L S  S  
Sbjct: 208 GCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSAC 267

Query: 226 NGYAQLKSGLQFAWQIFEKMPER-DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSW 284
              A  K G+Q   ++ +    R DLI  N+++    KCG++++A+ +FD+MP R+ VS 
Sbjct: 268 ATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSE 327

Query: 285 ANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYL 344
             M+ GYAK   V  AR +F  + ++D+V+ NA++ GY +NG + +AL +F  ++ E  +
Sbjct: 328 TTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRE-SV 386

Query: 345 HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH------GVALIDMYSKCGS 398
            P   +   +L+A A L  ++ G   H ++ K  F            G +LIDMY KCGS
Sbjct: 387 CPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGS 446

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
           +E  ++VFE + +     WN MI G A +G G  A +L  +M     +PD +T  G L A
Sbjct: 447 VEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCA 506

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
           C+HAGLV+EG   F  M + H L P   HY CMVD+LGRAG +E A++LIE MP +P+ V
Sbjct: 507 CSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAV 566

Query: 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578
           +W +LLSAC+ + N+ +G+ VA+ +  +D ++S  YVLL+NM++ LG W DA  VR +M+
Sbjct: 567 VWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMR 626

Query: 579 ERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
            R + K PGCSWI+++  VH F V+DK   Q ++IY +L
Sbjct: 627 RRGVVKQPGCSWIDIQSNVHVFMVKDKRHPQKKEIYSIL 665



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 139/451 (30%), Positives = 224/451 (49%), Gaps = 62/451 (13%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +L  C +L    +   +HG L +  F  ++F+QN LI +Y +CGYL++AR++FD+M  R+
Sbjct: 30  LLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSERN 89

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244
             S+NS+I   ++ G ++ +  LF  MP  E++  SWNS++ G+AQ     + A   F +
Sbjct: 90  VFSFNSIISTLMRWGFVDESAWLFSLMP--EKDQCSWNSMIAGFAQ-HDRFEEALDWFVR 146

Query: 245 MPERDLI----SWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGR 296
           M   D +    S+ S L  C +   +     +   + K     DV   + +ID Y+K G 
Sbjct: 147 MHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGL 206

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           V  ARR+FD M +++VV+ N ++  Y +NG +++ALE F  M  EL   PD+ +L  V+S
Sbjct: 207 VGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMT-ELGFKPDEVTLASVVS 265

Query: 357 AIAQLGHIDKGVAIH-RYLEKDQFSLNGKHGVALIDMYSKCG------------------ 397
           A A L    +GV IH R ++ D+F  +   G AL+DMY+KCG                  
Sbjct: 266 ACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAV 325

Query: 398 -------------SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS 444
                        S++ A  +F  I+   +  WNA+I G   +G  E A  L   ++R S
Sbjct: 326 SETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRES 385

Query: 445 IEPDDITFTGLLNAC-----------AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493
           + P   TF  LLNA            AH+ +VK G       R     EP++     ++D
Sbjct: 386 VCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGF------RFQSGEEPDIFVGNSLID 439

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
           +  + G +E    + E+M +E + V W T++
Sbjct: 440 MYMKCGSVEEGLRVFENM-VEKDHVSWNTMI 469


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/540 (37%), Positives = 318/540 (58%), Gaps = 12/540 (2%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   WN ++  Y+      +A  +F  M +     +  S + +L A  +   +EE   
Sbjct: 154 ERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEK----NDVSWNALLSAYVQNSKMEEAC- 208

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
              +L K      L   NCL+  +V+   +  ARQ FD M +RD VS+N++I GY +SG 
Sbjct: 209 ---MLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGK 265

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
           I+ AR+LFD  P+++  + +W ++++GY Q +  ++ A ++F+KMPER+ +SWN+ML G 
Sbjct: 266 IDEARQLFDESPVQD--VFTWTAMVSGYIQNRM-VEEARELFDKMPERNEVSWNAMLAGY 322

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
           V+  +M+ A+ LFD MP R+V +W  MI GYA+ G++  A+ LFD+MPKRD V+  AM+ 
Sbjct: 323 VQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIA 382

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           GY ++G+S +AL +F  M+ E     + +S    LS  A +  ++ G  +H  L K  + 
Sbjct: 383 GYSQSGHSFEALRLFVQMEREGG-RLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYE 441

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
                G AL+ MY KCGSIE A  +F+++    +  WN MI G + HG GE+A      M
Sbjct: 442 TGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESM 501

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500
           +R  ++PDD T   +L+AC+H GLV +G   F  M + + + P  QHY CMVD+LGRAG 
Sbjct: 502 KREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGL 561

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560
           +E A NL+++MP EP+  IW TLL A R + N  + E  A  +  M+  NS  YVLLSN+
Sbjct: 562 LEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNL 621

Query: 561 FAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +A  G W D  ++R  M+++ +KK+PG SWIE++   H F V D+   +  +I+  L+ +
Sbjct: 622 YASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEEL 681



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 120/397 (30%), Positives = 207/397 (52%), Gaps = 26/397 (6%)

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
           SD+   N  IS Y+R G    A ++F +M    SVSYN MI GY+++G  E AR+LFD M
Sbjct: 62  SDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEM 121

Query: 212 PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQA 271
           P  ER+L+SWN ++ GY + ++ L  A ++FE MPERD+ SWN+ML G  + G +DDA++
Sbjct: 122 P--ERDLVSWNVMIKGYVRNRN-LGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARS 178

Query: 272 LFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKA 331
           +FD+MP+++ VSW  ++  Y +  +++ A  LF       +V+ N ++GG+V+    ++A
Sbjct: 179 VFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEA 238

Query: 332 LEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI-HRYLEKDQFSLNGKHGVALI 390
            + FD+M        D  S   +++  AQ G ID+   +      +D F+       A++
Sbjct: 239 RQFFDSMNVR-----DVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTW-----TAMV 288

Query: 391 DMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
             Y +   +E A ++F+++ + +   WNAM+ G       E+A +L   M   ++     
Sbjct: 289 SGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVS---- 344

Query: 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIED 510
           T+  ++   A  G + E    F+   ++ K +P    +  M+    ++GH   A  L   
Sbjct: 345 TWNTMITGYAQCGKISEAKNLFD---KMPKRDP--VSWAAMIAGYSQSGHSFEALRLFVQ 399

Query: 511 MPMEP---NDVIWRTLLSACRNYENLNVGEPVAKHLI 544
           M  E    N   + + LS C +   L +G+ +   L+
Sbjct: 400 MEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLV 436



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 189/356 (53%), Gaps = 38/356 (10%)

Query: 179 KMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQF 237
           K G  D   +N  I  Y+++G    A  +F  MP    + +S+N +++GY  L++G  + 
Sbjct: 58  KCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMP--RWSSVSYNGMISGY--LRNGEFEL 113

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
           A ++F++MPERDL+SWN M+ G V+   +  A+ LF+ MP+RDV SW  M+ GYA+ G V
Sbjct: 114 ARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCV 173

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
           D AR +FD MP+++ V+ NA++  YV+N    +A        C L+   ++ +LV   S 
Sbjct: 174 DDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEA--------CMLFKSRENWALV---SW 222

Query: 358 IAQLGHIDKGVAIHRYLEKDQF--SLNGKHGVA---LIDMYSKCGSIENAIKVFEQIEDG 412
              LG   K   I   +E  QF  S+N +  V+   +I  Y++ G I+ A ++F++    
Sbjct: 223 NCLLGGFVKKKKI---VEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQ 279

Query: 413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCF 472
            V  W AM++G   + + E A +L  +M     E +++++  +L     AG V+   +  
Sbjct: 280 DVFTWTAMVSGYIQNRMVEEARELFDKMP----ERNEVSWNAML-----AGYVQGERM-- 328

Query: 473 ELMRRIHKLEP--ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           E+ + +  + P   +  +  M+    + G I  A+NL + MP + + V W  +++ 
Sbjct: 329 EMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 383


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/545 (37%), Positives = 324/545 (59%), Gaps = 24/545 (4%)

Query: 82  KDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           KD   +N +I +++ HGL     + +     D     D  S + +L A  R G I+E  +
Sbjct: 198 KDSVSYNVMISSHANHGL-----VSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARE 252

Query: 141 IHGLLRKVAFGS----DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           +        F S    D    N L++ YV+   +E A+++F+KM  RD VS+N+M+ GY 
Sbjct: 253 L--------FDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYA 304

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
           + G++  AR LFD  PIR  ++ +W ++++GYAQ    L+ A ++F+ MP+++ +SWN+M
Sbjct: 305 RRGDMAEARRLFDVAPIR--DVFTWTAIVSGYAQ-NGMLEEAKRVFDAMPDKNAVSWNAM 361

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
           +   V+   M++A+ LFD MP R+V SW  M+ GYA+ G +D AR +F  MP++D V+  
Sbjct: 362 MAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWA 421

Query: 317 AMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           AM+  Y + G+S + L++F  M +C  ++  + ++   VLS  A +  ++ G+ +H  L 
Sbjct: 422 AMLAAYSQIGFSEETLQLFKEMGRCGEWV--NRSAFACVLSTCADIAALECGMQLHSRLI 479

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           K  + +    G AL+ MY KCGS+E A   FE++E+  V  WN MI G A HG G+ A +
Sbjct: 480 KAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALE 539

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           +   M + S +PDDIT  G+L AC+H+GLV++G+  F  M R   +  + +HY CM+D+L
Sbjct: 540 VFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLL 599

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           GRAG ++ A NL++DMP EP+  +W  LL A R + N  +G   A+ +  ++  N+  YV
Sbjct: 600 GRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYV 659

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY 615
           LLSN++A  G W D  ++R +M ER +KK+PG SWIE++  VH F V D    +  DIY 
Sbjct: 660 LLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYA 719

Query: 616 MLDNM 620
            L+++
Sbjct: 720 FLEDL 724



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 172/347 (49%), Gaps = 34/347 (9%)

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA---QLKSGLQFAWQIF 242
           +  N  I  ++++G +  A  LF +MP   R+  ++N++L GYA   +L   L F    F
Sbjct: 108 IRRNRAITAHMRAGRVPDAERLFAAMP--RRSTSTYNTMLAGYAANGRLPQALSF----F 161

Query: 243 EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
             +P  D  S+N++LH       + D +ALFD+MP +D VS+  MI  +A  G V +AR 
Sbjct: 162 RSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARH 221

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
            FD  P++D V+ N M+  YVRNG   +A E+FD+ + E     D  S   +++   Q  
Sbjct: 222 YFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDS-RTEW----DAISWNALMAGYVQRS 276

Query: 363 HIDKGVAI-HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
            I++   + ++  ++D  S N      ++  Y++ G +  A ++F+      V  W A++
Sbjct: 277 QIEEAQKMFNKMPQRDVVSWN-----TMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIV 331

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
           +G A +G+ E A  +   M     + + +++  ++ A     +++E    F+ M      
Sbjct: 332 SGYAQNGMLEEAKRVFDAMP----DKNAVSWNAMMAAYVQRRMMEEAKELFDAM------ 381

Query: 482 EP--ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
            P   +  +  M+    +AG ++ AR +   MP + + V W  +L+A
Sbjct: 382 -PCRNVASWNTMLTGYAQAGMLDEARAIFGMMP-QKDAVSWAAMLAA 426



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 136/298 (45%), Gaps = 45/298 (15%)

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           AR IF        +KD   W A++  YS     +E L +F  M   G  V++ + + VL 
Sbjct: 405 ARAIF----GMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLS 460

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
            C+ +  +E G+Q+H  L K  +G   F+ N L+++Y +CG +E A   F++M  RD VS
Sbjct: 461 TCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVS 520

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
           +N+MI GY + G  + A E+FD+M                               +   +
Sbjct: 521 WNTMIAGYARHGFGKEALEVFDTM------------------------------RKTSTK 550

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS-----WANMIDGYAKLGRVDIARR 302
            D I+   +L  C   G ++   + F  M +   V+     +  MID   + GR+D A  
Sbjct: 551 PDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVN 610

Query: 303 LFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELY-LHPDDASLVIVLSAI 358
           L  +MP + D     A++G    +  S    E+  N   +++ L P++A + ++LS I
Sbjct: 611 LMKDMPFEPDSTMWGALLGASRIHRNS----ELGRNAAEKIFELEPENAGMYVLLSNI 664



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 155/341 (45%), Gaps = 32/341 (9%)

Query: 246 PERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFD 305
           P+ ++I  N  +   ++ G++ DA+ LF  MP+R   ++  M+ GYA  GR+  A   F 
Sbjct: 103 PDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFR 162

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
            +P+ D  + N ++     +        +FD M  +     D  S  +++S+ A  G + 
Sbjct: 163 SIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVK-----DSVSYNVMISSHANHGLVS 217

Query: 366 KGVAIHRY---LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
             +A H +    EKD  S NG     ++  Y + G I+ A ++F+   +     WNA++ 
Sbjct: 218 --LARHYFDLAPEKDAVSWNG-----MLAAYVRNGRIQEARELFDSRTEWDAISWNALMA 270

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
           G       E A  +  +M     + D +++  +++  A  G + E        RR+  + 
Sbjct: 271 GYVQRSQIEEAQKMFNKMP----QRDVVSWNTMVSGYARRGDMAEA-------RRLFDVA 319

Query: 483 P--ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           P  ++  +  +V    + G +E A+ + + MP + N V W  +++A   Y    + E   
Sbjct: 320 PIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMP-DKNAVSWNAMMAA---YVQRRMMEEAK 375

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581
           +    M   N +S+  +   +A  GM ++AR +  MM +++
Sbjct: 376 ELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKD 416



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 19/190 (10%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE--KKDPFLWNA 89
           Q+H+R+I  G+     +   L+A +    C  + E        + AF E  ++D   WN 
Sbjct: 473 QLHSRLIKAGYGVGCFVGNALLAMYFK--CGSMEE-------AHSAFEEMEERDVVSWNT 523

Query: 90  IIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ-IHGLLRK 147
           +I  Y+ HG   KEAL +F  M       D  +   VL ACS  GL+E+G+   + + R 
Sbjct: 524 MIAGYARHGFG-KEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRD 582

Query: 148 VAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMIDGYVKSGNIE---- 202
               +      C+I L  R G L+ A  L   M    DS  + +++       N E    
Sbjct: 583 FGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRN 642

Query: 203 SARELFDSMP 212
           +A ++F+  P
Sbjct: 643 AAEKIFELEP 652


>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Brachypodium distachyon]
          Length = 555

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/511 (38%), Positives = 309/511 (60%), Gaps = 9/511 (1%)

Query: 85  FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLG-LIEEGLQIHG 143
           FL N +I+  +    P+ A   F  +L +G + D+F+   +LK+ SRL      G Q+H 
Sbjct: 44  FLHNLLIRASATSPSPRLAFAAFSSILRSGDTPDRFTFPSLLKSASRLASFPRTGAQVHA 103

Query: 144 LLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK-MGIRDSVSYNSMIDGYVKSGNIE 202
              +     D+F+ N L+++Y         R++FD   G+ D V++N+M+ GYVK G I 
Sbjct: 104 QAVRRGLLVDVFVVNTLLAMYAAFRDTRSMREVFDSCAGVADLVTWNTMLGGYVKCGEIG 163

Query: 203 SARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE--RDLISWNSMLHGC 260
            AR +F+ MP  +RN +SW++++  YA     L  A ++F++MP   R+++SWNSM+ G 
Sbjct: 164 EARRVFEQMP--QRNGVSWSAMVGAYAGAGE-LDVAREMFDEMPAIGRNVVSWNSMITGF 220

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
            + G +  A+ +FD+MP R++VSW  M+ GYA  G ++ AR LFD MP++DVV+   M+ 
Sbjct: 221 ARHGLLPLARKMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMPEKDVVSWTCMIS 280

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           GY +     + LE+F  MQ E  + P++ ++V VLSA A L  +++G   H +++K +  
Sbjct: 281 GYAQARCYTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAHAFIDKHKMV 340

Query: 381 LNGKH--GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
           L+ +   G ALIDMYSKCG  + A+K+F  ++  +V  WNA+I GLA++G    + D+  
Sbjct: 341 LDSEFNLGAALIDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFE 400

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
           +M R   +P+ ITF G+L ACAH GLV EG  CF+ M     ++PE +HYGCMVD+LGRA
Sbjct: 401 QMRRSGEKPNGITFVGVLTACAHGGLVDEGRRCFQSMASTCGVQPEAKHYGCMVDMLGRA 460

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           G +E A  LI  MPM P+ +I   LL ACR ++ ++V   V   ++G+ +  S  +VL+S
Sbjct: 461 GLLEEAEELIRSMPMVPDVMILGALLGACRMHKRVDVAARVQNEILGLSTQQSGCHVLIS 520

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCS 589
           +++A  G W DA   R ++++  + KL G S
Sbjct: 521 DIYAAAGKWADALYARGVLQKFGISKLRGSS 551


>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 605

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/610 (35%), Positives = 339/610 (55%), Gaps = 57/610 (9%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L KC   N + QIHA++I     ++ ++  KL+AS+S             +    + F +
Sbjct: 29  LHKCTNPNHIKQIHAQLIKCHLHQDPYIAPKLIASYS---------LTNNLSSAVNVFNQ 79

Query: 81  KKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLD---NGVSVDKFSASLVLKAC----SR 131
             DP   L+N +I+ YS   +   +L  F ++L    +GV  D F+   +LK C    S 
Sbjct: 80  VPDPNVHLYNYLIRAYSLSGNESNSLCAFGVLLKMHVDGVLADNFTYPFLLKGCNGSSSW 139

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
           L L++    +H  + K+ F  D+F+ N                               S+
Sbjct: 140 LSLVK---MVHAHVEKLGFYWDIFVPN-------------------------------SL 165

Query: 192 IDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI 251
           ID Y + G++E A ++F  M   ER+++SWNS++ G  +    L  A ++F++MPERD +
Sbjct: 166 IDCYCRCGDVEMAMKVFSGM--EERDVVSWNSMVGGLVK-NGDLDGALKVFDEMPERDRV 222

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           SWN+ML G  K G+MD A  LF++M +RD+VSW+ M+ GY+K G +D+AR LFD  P ++
Sbjct: 223 SWNTMLDGFTKAGEMDKAFKLFERMAERDIVSWSTMVCGYSKNGDMDMARMLFDRCPVKN 282

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           +V    ++ GY   G   +A+ + D M+ +  L  DD   + +L+A A+ G +  G  +H
Sbjct: 283 LVLWTTIISGYAEKGQVKEAMNLCDEME-KSGLRLDDGFFISILAACAESGMLGLGKKMH 341

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHGLG 430
               + +F  + K   + IDMY+KCG +++A +VF  ++ +  +  WN+MI+G  IHG G
Sbjct: 342 DSFLRSRFRCSTKVLNSFIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHG 401

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
           E + +L   M R   +PD  TF GLL AC HAGLV EG   F  M+R++ + P+++HYGC
Sbjct: 402 EKSIELFNTMVREGFKPDRYTFIGLLCACTHAGLVNEGRGYFYSMQRVYGIVPQIEHYGC 461

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           MVD+LGR GH++ A  L+  MP EPN +I  TLL ACR + ++ +   V+K+L  +  S+
Sbjct: 462 MVDLLGRGGHLKEAFWLVRSMPFEPNAIILGTLLGACRMHNDVKLATSVSKYLFKLVPSD 521

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQV 610
             ++ LLSN++A  G W +  +VR  M +   +K  G S IE+E  VHEF VRD S  + 
Sbjct: 522 PGNFSLLSNIYAQSGDWINVAKVRKQMNDEGGQKPSGVSSIEVEEEVHEFTVRDWSHPKS 581

Query: 611 RDIYYMLDNM 620
            DIY M+D +
Sbjct: 582 GDIYNMIDRL 591


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 220/662 (33%), Positives = 361/662 (54%), Gaps = 82/662 (12%)

Query: 2   FVSANYNQPCNSTQS--TLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSS 59
           F+ ++ + P +S ++  +L LL  CKTL  +  IHA+MI  G     +  +KL+     S
Sbjct: 19  FLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILS 78

Query: 60  PCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDK 119
           P      +A  +F       ++ +  +WN + + ++   DP  AL ++  M+  G+  + 
Sbjct: 79  PHFEGLPYAISVFKTI----QEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNS 134

Query: 120 FSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK 179
           ++   VLK+C++    +EG QIHG + K+    DL++   LIS+YV              
Sbjct: 135 YTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYV-------------- 180

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAW 239
                            ++G +E A ++FD  P   R+++S+ +++ GYA  +  ++ A 
Sbjct: 181 -----------------QNGRLEDAHKVFDKSP--HRDVVSYTALIKGYAS-RGYIENAQ 220

Query: 240 QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK--------------------- 278
           ++F+++P +D++SWN+M+ G  + G   +A  LF  M K                     
Sbjct: 221 KLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSG 280

Query: 279 -----RDVVSWAN-------------MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
                R V  W +             +ID Y+K G ++ A  LF+ +P +DV++ N ++G
Sbjct: 281 SIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIG 340

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           GY       +AL +F  M       P+D +++ +L A A LG ID G  IH Y++K    
Sbjct: 341 GYTHMNLYKEALLLFQEM-LRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKG 399

Query: 381 LNGKHGV--ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
           +     +  +LIDMY+KCG IE A +VF  I   S+  WNAMI G A+HG  + +FDL  
Sbjct: 400 VTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFS 459

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
            M ++ I+PDDITF GLL+AC+H+G++  G   F  M + +K+ P+L+HYGCM+D+LG +
Sbjct: 460 RMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHS 519

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           G  + A  +I  M MEP+ VIW +LL AC+ + N+ +GE  A++LI ++  N  SYVLLS
Sbjct: 520 GLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLS 579

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           N++A  G WN+  + R+++ ++ +KK+PGCS IE++ VVHEF + DK   + R+IY ML+
Sbjct: 580 NIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLE 639

Query: 619 NM 620
            M
Sbjct: 640 EM 641


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 221/614 (35%), Positives = 329/614 (53%), Gaps = 79/614 (12%)

Query: 16  STLLLLRKCKTLNDVNQIHARMITTGFIKNTHLT--TKLVASFSSS-PCTPLTEFARYIF 72
           S L  L+ CK++  + QIHA +I T    +  LT  T+L A  + S P  P     RY  
Sbjct: 39  SFLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDP-----RYAL 93

Query: 73  FKYHAFREKKDPFLWNAIIKTY-SHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
                 R    P L+NAII+   +   D  E LV++  ML  G+  D ++   VLKAC+ 
Sbjct: 94  SLLAQLRTPNLP-LYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAE 152

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
              + EG ++HG   K+   SD+++                                N++
Sbjct: 153 SRAVREGEEVHGQAIKMGLASDVYVS-------------------------------NTL 181

Query: 192 IDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI 251
           +  Y     I SAR++FD+                                   P+RDL+
Sbjct: 182 MRMYAVCDVIRSARKVFDTS----------------------------------PQRDLV 207

Query: 252 SWNSMLHGCVKCGKMDDAQALF---DKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           SW +M+ G VK G   +   L+   +     DV     ++D Y K G  + AR++F EMP
Sbjct: 208 SWTTMIQGYVKMGFAREGVGLYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMP 267

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            ++VV+ N+M+ G  + G   ++L +F  MQ  L + PDD +LV VL++ A LG ++ G 
Sbjct: 268 VKNVVSWNSMISGLAQKGQFKESLYMFRKMQ-RLGVKPDDVTLVAVLNSCANLGVLELGK 326

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            +H YL+++Q   +G  G AL+DMY+KCGSI+ A  VF+ +    V  + AMI GLA+HG
Sbjct: 327 WVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHG 386

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
            G  A DL  EM ++ IEPD++TF G+L AC+H GLV+EG   FE M  I+ L P+L+HY
Sbjct: 387 QGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHY 446

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
           GCMVD+LGRAG I  A   I +MP+EP+  +   LL AC+ +  + +GE V K +  ++ 
Sbjct: 447 GCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEP 506

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
               +YVL+SN+++    W DA ++R  MKERNL+K PGCS IEL+GV+HEF   DKS  
Sbjct: 507 RKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHP 566

Query: 609 QVRDIYYMLDNMWT 622
           ++++IY +LD + +
Sbjct: 567 KIKEIYKLLDEIMS 580


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/626 (33%), Positives = 349/626 (55%), Gaps = 18/626 (2%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
           Q+   L+ +C +L  +  +HA++I  G         KLV+S         +   R + + 
Sbjct: 37  QTLHYLIDQCISLKQLKHVHAQIILHGLATQVLTLGKLVSS---------SVQLRDLRYA 87

Query: 75  YHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL 132
           +  F +   P  F++N +IK YS+  DP ++L+++  M+ +G+  ++F+   VLKAC+  
Sbjct: 88  HKLFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAK 147

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
                G+ +H    K+  GS   +QN ++++YV CG +  AR++FD +  R  VS+NSMI
Sbjct: 148 SCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMI 207

Query: 193 DGYVKSGNIESARELFDSM-----PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
           +GY K G  E A  +F  M           L+   SV   +     G      +     E
Sbjct: 208 NGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIE 267

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
            D I  N+++    KCG +  A+++FD+M  +DVVSW  MI+ YA  G +D A   F++M
Sbjct: 268 IDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQM 327

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
           P ++VV+ N+++  +V+ G   +A+++F  M C+  +  +D +LV +LS+ + +G +  G
Sbjct: 328 PGKNVVSWNSIIWCHVQEGLYAEAVDLFYRM-CDSGVMANDTTLVAILSSCSHMGDLALG 386

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
              H Y+  +  +L+     A+IDMY+KCG+++ A+ VF  + + +   WN +I  LA+H
Sbjct: 387 KQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALH 446

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           G G+ A ++  +M+   + PD+ITFTGLL+AC+H+GLV  G   FE+M     + P+++H
Sbjct: 447 GYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEH 506

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
           Y CMVD+LGR G +  A +LI+ MP++P+ V+W  LL ACR Y NL +G+ + K L+ + 
Sbjct: 507 YACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQIMKQLLELG 566

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
             NS  YVLLSNM++    W+D + +  ++ +  +KK    S+IE++G  ++F V DK  
Sbjct: 567 RYNSGLYVLLSNMYSESQRWDDMKNIWKILDQNGIKKCRAISFIEIDGCCYQFMVDDKRH 626

Query: 608 LQVRDIYYMLDNMWTP-DSVATSCTH 632
                IY ML  +     S    C H
Sbjct: 627 GASTSIYSMLGQLMDHLKSAGYPCKH 652


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/641 (33%), Positives = 345/641 (53%), Gaps = 80/641 (12%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
             +L LL  CKTL  +  IHA+MI TG     +  +KL+     SP      +A  +F  
Sbjct: 3   HPSLSLLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDS 62

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
                ++ +  +WN + + ++   DP  AL ++  M+  G+  + ++   +LKAC++   
Sbjct: 63  I----QEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKA 118

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
             EG QIHG + K+    DL++   LI++YV                             
Sbjct: 119 FREGQQIHGHVLKLGCDLDLYVHTSLIAMYV----------------------------- 149

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN 254
             K+G  E AR++FD      R+++S+ +++ GYA     +  A ++F+++P +D++SWN
Sbjct: 150 --KNGRXEDARKVFDQSS--HRDVVSYTALIKGYAS-NGYIXSAQKMFDEIPVKDVVSWN 204

Query: 255 SMLHGCVKCGKMDDAQALFDKMPK--------------------------RDVVSWAN-- 286
           +++ G  + G   +A  LF +M K                          R V SW +  
Sbjct: 205 ALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDH 264

Query: 287 -----------MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
                      +ID Y K G V+ A  LF+ +  +DV++ N ++GGY       +AL +F
Sbjct: 265 GFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLF 324

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV--ALIDMY 393
             M       P++ +++ +L A A LG ID G  IH Y++K    ++    +  +LIDMY
Sbjct: 325 QEM-LRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMY 383

Query: 394 SKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
           +KCG IE A +VF+ + + S+  WNAMI G A+HG    AFD+   M +  IEPDDITF 
Sbjct: 384 AKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFV 443

Query: 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPM 513
           GLL+AC+H+G++  G   F  M   +K+ P+L+HYGCM+D+LG +G  + A  +I  M M
Sbjct: 444 GLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEM 503

Query: 514 EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV 573
           +P+ VIW +LL AC+ + N+ +GE  A++LI ++  NS SYVLLSN++A  G WN+  + 
Sbjct: 504 DPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKR 563

Query: 574 RSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           R+++ ++ +KK+PGCS IE++ VVHEF + DK   + R+IY
Sbjct: 564 RALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNREIY 604


>gi|449459744|ref|XP_004147606.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Cucumis sativus]
 gi|449529850|ref|XP_004171911.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Cucumis sativus]
          Length = 580

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/569 (36%), Positives = 327/569 (57%), Gaps = 11/569 (1%)

Query: 27  LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFL 86
           +    QIHA+++  G     +L + LV   + S  T     +RY+    H  R   D F 
Sbjct: 16  VKQATQIHAQILVNGL---PNLESCLVRQITRSQFTCARIVSRYLQRILHHSR-NPDAFT 71

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           W   ++ +S      EA+  +  M   G+    F+ S  L+AC R+     G  IH  + 
Sbjct: 72  WACAVRFFSQNGQFMEAIAHYVQMQRLGLHPSTFAVSSTLRACGRIMCKFRGWCIHAQVY 131

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           K+ F   +++Q  L+  Y + G + FA+++FD+M  ++ VS+NS++ GYVK GN+  A++
Sbjct: 132 KLGFCRCVYVQTALVDFYSKLGDMGFAQKVFDEMTEKNVVSWNSILSGYVKIGNLVDAQK 191

Query: 207 LFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKM 266
           LFD MP+++   ISWNS+L G++     +  A  +F++M E+   SWN+M+ G V CG M
Sbjct: 192 LFDEMPVKDA--ISWNSMLTGFSN-SGNMDRACCLFQQMGEKSSASWNAMIGGYVNCGDM 248

Query: 267 DDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM--PKRDVVACNAMMGGYVR 324
             A+ LFD MP R+ V+   +I GY+KLG V+ A  LFD+M   ++++++ NAM+  Y +
Sbjct: 249 KAARNLFDVMPNRNNVTRITLIAGYSKLGEVNSAYELFDKMEESEKELLSFNAMIACYSQ 308

Query: 325 NGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG 383
           N    KALE+F+ M Q  + + PD+ +   V+SA  QLG++  G  I  Y+EK    L+ 
Sbjct: 309 NSMPNKALELFNLMLQPHVNIQPDEMTFASVISACTQLGNLSYGTWIESYMEKLGIELDD 368

Query: 384 KHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
               AL+D+Y+K G+I  A ++F  ++   +  ++AMI G  I+     A  L  EM R+
Sbjct: 369 HLATALVDLYAKSGNINRAFELFNGLKKRDLVAYSAMIFGCGINSKAHEAIRLFKEMLRV 428

Query: 444 SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503
           +I P+ +T+ GLL A  HAGLV EG LCF  M+  H L P   HYG MVD+LGRAG +E 
Sbjct: 429 NICPNLVTYAGLLTAYNHAGLVDEGYLCFSSMKD-HGLAPLADHYGIMVDLLGRAGRLEE 487

Query: 504 ARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563
           A  LI  MP++PN  +W  LL AC+ + N+ +GE  A++   + +  +    LL+N+++ 
Sbjct: 488 AYELIHSMPVQPNAGVWGALLHACKLHNNVELGEIAARNCSKLVTDTTGYRSLLANIYSS 547

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           +  W+DA+R+R  M  +   K+ GCSW+E
Sbjct: 548 MERWDDAKRMRKAMGNKIFAKISGCSWME 576


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/541 (37%), Positives = 322/541 (59%), Gaps = 16/541 (2%)

Query: 82  KDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +D   +N +I +++ HGL     + +     D     D  S + +L A  R G +EE   
Sbjct: 129 RDSVTYNVMISSHANHGL-----VSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEA-- 181

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
             GL        D+   N L+S YV+ G +  AR+LFD+M  RD VS+N M+ GY + G+
Sbjct: 182 -RGLFNSRT-EWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGD 239

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
           +  AR LFD+ P+R  ++ +W +V++GYAQ    L+ A ++F+ MPER+ +SWN+M+   
Sbjct: 240 MVEARRLFDAAPVR--DVFTWTAVVSGYAQ-NGMLEEARRVFDAMPERNAVSWNAMVAAY 296

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
           ++   MD+A+ LF+ MP R+V SW  M+ GYA+ G ++ A+ +FD MP++D V+  AM+ 
Sbjct: 297 IQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLA 356

Query: 321 GYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF 379
            Y + G S + L++F  M +C  ++  + ++   VLS  A +  ++ G+ +H  L +  +
Sbjct: 357 AYSQGGCSEETLQLFIEMGRCGEWV--NRSAFACVLSTCADIAALECGMQLHGRLIRAGY 414

Query: 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLME 439
            +    G AL+ MY KCG++E+A   FE++E+  V  WN MI G A HG G+ A ++   
Sbjct: 415 GVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDM 474

Query: 440 MERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG 499
           M   S +PDDIT  G+L AC+H+GLV++G+  F  M     +  + +HY CM+D+LGRAG
Sbjct: 475 MRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAG 534

Query: 500 HIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559
            +  A +L++DMP EP+  +W  LL A R + N  +G   A+ +  ++  N+  YVLLSN
Sbjct: 535 RLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSN 594

Query: 560 MFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDN 619
           ++A  G W DAR++R MM+ER +KK+PG SWIE++  VH F   D    +   IY  L++
Sbjct: 595 IYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLED 654

Query: 620 M 620
           +
Sbjct: 655 L 655



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 135/497 (27%), Positives = 229/497 (46%), Gaps = 50/497 (10%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           ++   N  I+ ++R G +  A +LF  M  R + +YN+M+ GY  +G +  A  LF ++P
Sbjct: 37  EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP 96

Query: 213 IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
            R  N  S+N++L+  A + S L  A  +F++MP RD +++N M+      G +  A+  
Sbjct: 97  -RPDNY-SYNTLLHALA-VSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHY 153

Query: 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
           FD  P++D VSW  M+  Y + GRV+ AR LF+   + DV++ NA+M GYV+ G   +A 
Sbjct: 154 FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEAR 213

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE----KDQFSLNGKHGVA 388
           E+FD M        D  S  I++S  A+ G +   V   R  +    +D F+       A
Sbjct: 214 ELFDRMPGR-----DVVSWNIMVSGYARRGDM---VEARRLFDAAPVRDVFTW-----TA 260

Query: 389 LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD 448
           ++  Y++ G +E A +VF+ + + +   WNAM+       + + A +L   M   ++   
Sbjct: 261 VVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNV--- 317

Query: 449 DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLI 508
             ++  +L   A AG+++E    F+ M      + +   +  M+    + G  E    L 
Sbjct: 318 -ASWNTMLTGYAQAGMLEEAKAVFDTM-----PQKDAVSWAAMLAAYSQGGCSEETLQLF 371

Query: 509 EDMPM---EPNDVIWRTLLSACRNYENLNVGEPVAKHLI--GMDSSNSSSYVLLSNMFAG 563
            +M       N   +  +LS C +   L  G  +   LI  G          LL+ M+  
Sbjct: 372 IEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLA-MYFK 430

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSW-IELEGVVHEFFVRDKSRLQVRDIYYMLDNMWT 622
            G   DAR     M+ER++      SW   + G     F   K  L++ D+  M      
Sbjct: 431 CGNMEDARNAFEEMEERDV-----VSWNTMIAGYARHGF--GKEALEIFDM--MRTTSTK 481

Query: 623 PDSVA-----TSCTHYG 634
           PD +       +C+H G
Sbjct: 482 PDDITLVGVLAACSHSG 498



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 120/245 (48%), Gaps = 21/245 (8%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +KD   W A++  YS G   +E L +F  M   G  V++ + + VL  C+ +  +E G+Q
Sbjct: 345 QKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQ 404

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +HG L +  +G   F+ N L+++Y +CG +E AR  F++M  RD VS+N+MI GY + G 
Sbjct: 405 LHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGF 464

Query: 201 IESARELFDSMPIRER-----NLISWNSVLNGYAQLKSGLQFAWQIFEKM-----PERDL 250
            + A E+FD M           L+   +  +    ++ G+ + + +         PE   
Sbjct: 465 GKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEH-- 522

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMP-KRDVVSW-----ANMIDGYAKLGRVDIARRLF 304
             +  M+    + G++ +A  L   MP + D   W     A+ I    +LGR   A ++F
Sbjct: 523 --YTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGR-SAAEKIF 579

Query: 305 DEMPK 309
           +  P+
Sbjct: 580 ELEPE 584



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 153/341 (44%), Gaps = 34/341 (9%)

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
           E ++I  N  +   ++ G++ DA+ LF  MP+R   ++  M+ GY+  GR+ +A  LF  
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA 94

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           +P+ D  + N ++     +     A  +FD M        D  +  +++S+ A  G +  
Sbjct: 95  IPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVR-----DSVTYNVMISSHANHGLVS- 148

Query: 367 GVAIHRY---LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
            +A H +    EKD  S NG     ++  Y + G +E A  +F    +  V  WNA+++G
Sbjct: 149 -LARHYFDLAPEKDAVSWNG-----MLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSG 202

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
               G    A +L   M       D +++  +++  A  G + E        RR+    P
Sbjct: 203 YVQWGKMSEARELFDRMPGR----DVVSWNIMVSGYARRGDMVEA-------RRLFDAAP 251

Query: 484 --ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
             ++  +  +V    + G +E AR + + MP E N V W  +++A      ++     AK
Sbjct: 252 VRDVFTWTAVVSGYAQNGMLEEARRVFDAMP-ERNAVSWNAMVAAYIQRRMMD----EAK 306

Query: 542 HLIG-MDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581
            L   M   N +S+  +   +A  GM  +A+ V   M +++
Sbjct: 307 ELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKD 347



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 15/188 (7%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           Q+H R+I  G+     +   L+A +    C  + E AR  F +     E++D   WN +I
Sbjct: 404 QLHGRLIRAGYGVGCFVGNALLAMYFK--CGNM-EDARNAFEEM----EERDVVSWNTMI 456

Query: 92  KTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ-IHGLLRKVA 149
             Y+ HG   KEAL +F +M       D  +   VL ACS  GL+E+G+   + +     
Sbjct: 457 AGYARHGFG-KEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFG 515

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMIDGYVKSGNIE----SA 204
             +      C+I L  R G L  A  L   M    DS  + +++       N E    +A
Sbjct: 516 VTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAA 575

Query: 205 RELFDSMP 212
            ++F+  P
Sbjct: 576 EKIFELEP 583


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/541 (37%), Positives = 322/541 (59%), Gaps = 16/541 (2%)

Query: 82  KDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +D   +N +I +++ HGL     + +     D     D  S + +L A  R G +EE   
Sbjct: 129 RDSVTYNVMISSHANHGL-----VSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEA-- 181

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
             GL        D+   N L+S YV+ G +  AR+LFD+M  RD VS+N M+ GY + G+
Sbjct: 182 -RGLFNSRT-EWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGD 239

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
           +  AR LFD+ P+R  ++ +W +V++GYAQ    L+ A ++F+ MPER+ +SWN+M+   
Sbjct: 240 MVEARRLFDAAPVR--DVFTWTAVVSGYAQ-NGMLEEARRVFDAMPERNAVSWNAMVAAY 296

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
           ++   MD+A+ LF+ MP R+V SW  M+ GYA+ G ++ A+ +FD MP++D V+  AM+ 
Sbjct: 297 IQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLA 356

Query: 321 GYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF 379
            Y + G S + L++F  M +C  ++  + ++   VLS  A +  ++ G+ +H  L +  +
Sbjct: 357 AYSQGGCSEETLQLFIEMGRCGEWV--NRSAFACVLSTCADIAALECGMQLHGRLIRAGY 414

Query: 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLME 439
            +    G AL+ MY KCG++E+A   FE++E+  V  WN MI G A HG G+ A ++   
Sbjct: 415 GVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDM 474

Query: 440 MERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG 499
           M   S +PDDIT  G+L AC+H+GLV++G+  F  M     +  + +HY CM+D+LGRAG
Sbjct: 475 MRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAG 534

Query: 500 HIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559
            +  A +L++DMP EP+  +W  LL A R + N  +G   A+ +  ++  N+  YVLLSN
Sbjct: 535 RLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSN 594

Query: 560 MFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDN 619
           ++A  G W DAR++R MM+ER +KK+PG SWIE++  VH F   D    +   IY  L++
Sbjct: 595 IYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLED 654

Query: 620 M 620
           +
Sbjct: 655 L 655



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 135/497 (27%), Positives = 229/497 (46%), Gaps = 50/497 (10%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           ++   N  I+ ++R G +  A +LF  M  R + +YN+M+ GY  +G +  A  LF ++P
Sbjct: 37  EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP 96

Query: 213 IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
            R  N  S+N++L+  A + S L  A  +F++MP RD +++N M+      G +  A+  
Sbjct: 97  -RPDNY-SYNTLLHALA-VSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHY 153

Query: 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
           FD  P++D VSW  M+  Y + GRV+ AR LF+   + DV++ NA+M GYV+ G   +A 
Sbjct: 154 FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEAR 213

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE----KDQFSLNGKHGVA 388
           E+FD M        D  S  I++S  A+ G +   V   R  +    +D F+       A
Sbjct: 214 ELFDRMPGR-----DVVSWNIMVSGYARRGDM---VEARRLFDAAPVRDVFTW-----TA 260

Query: 389 LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD 448
           ++  Y++ G +E A +VF+ + + +   WNAM+       + + A +L   M   ++   
Sbjct: 261 VVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNV--- 317

Query: 449 DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLI 508
             ++  +L   A AG+++E    F+ M      + +   +  M+    + G  E    L 
Sbjct: 318 -ASWNTMLTGYAQAGMLEEAKAVFDTM-----PQKDAVSWAAMLAAYSQGGCSEETLQLF 371

Query: 509 EDMPM---EPNDVIWRTLLSACRNYENLNVGEPVAKHLI--GMDSSNSSSYVLLSNMFAG 563
            +M       N   +  +LS C +   L  G  +   LI  G          LL+ M+  
Sbjct: 372 IEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLA-MYFK 430

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSW-IELEGVVHEFFVRDKSRLQVRDIYYMLDNMWT 622
            G   DAR     M+ER++      SW   + G     F   K  L++ D+  M      
Sbjct: 431 CGNMEDARNAFEEMEERDV-----VSWNTMIAGYARHGF--GKEALEIFDM--MRTTSTK 481

Query: 623 PDSVA-----TSCTHYG 634
           PD +       +C+H G
Sbjct: 482 PDDITLVGVLAACSHSG 498



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 120/245 (48%), Gaps = 21/245 (8%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +KD   W A++  YS G   +E L +F  M   G  V++ + + VL  C+ +  +E G+Q
Sbjct: 345 QKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQ 404

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +HG L +  +G   F+ N L+++Y +CG +E AR  F++M  RD VS+N+MI GY + G 
Sbjct: 405 LHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGF 464

Query: 201 IESARELFDSMPIRER-----NLISWNSVLNGYAQLKSGLQFAWQIFEKM-----PERDL 250
            + A E+FD M           L+   +  +    ++ G+ + + +         PE   
Sbjct: 465 GKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEH-- 522

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMP-KRDVVSW-----ANMIDGYAKLGRVDIARRLF 304
             +  M+    + G++ +A  L   MP + D   W     A+ I    +LGR   A ++F
Sbjct: 523 --YTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGR-SAAEKIF 579

Query: 305 DEMPK 309
           +  P+
Sbjct: 580 ELEPE 584



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 153/341 (44%), Gaps = 34/341 (9%)

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
           E ++I  N  +   ++ G++ DA+ LF  MP+R   ++  M+ GY+  GR+ +A  LF  
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA 94

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           +P+ D  + N ++     +     A  +FD M        D  +  +++S+ A  G +  
Sbjct: 95  IPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVR-----DSVTYNVMISSHANHGLVS- 148

Query: 367 GVAIHRY---LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
            +A H +    EKD  S NG     ++  Y + G +E A  +F    +  V  WNA+++G
Sbjct: 149 -LARHYFDLAPEKDAVSWNG-----MLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSG 202

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
               G    A +L   M       D +++  +++  A  G + E        RR+    P
Sbjct: 203 YVQWGKMSEARELFDRMP----GRDVVSWNIMVSGYARRGDMVEA-------RRLFDAAP 251

Query: 484 --ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
             ++  +  +V    + G +E AR + + MP E N V W  +++A      ++     AK
Sbjct: 252 VRDVFTWTAVVSGYAQNGMLEEARRVFDAMP-ERNAVSWNAMVAAYIQRRMMD----EAK 306

Query: 542 HLIG-MDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581
            L   M   N +S+  +   +A  GM  +A+ V   M +++
Sbjct: 307 ELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKD 347



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 15/188 (7%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           Q+H R+I  G+     +   L+A +    C  + E AR  F +     E++D   WN +I
Sbjct: 404 QLHGRLIRAGYGVGCFVGNALLAMYFK--CGNM-EDARNAFEEM----EERDVVSWNTMI 456

Query: 92  KTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ-IHGLLRKVA 149
             Y+ HG   KEAL +F +M       D  +   VL ACS  GL+E+G+   + +     
Sbjct: 457 AGYARHGFG-KEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFG 515

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMIDGYVKSGNIE----SA 204
             +      C+I L  R G L  A  L   M    DS  + +++       N E    +A
Sbjct: 516 VTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAA 575

Query: 205 RELFDSMP 212
            ++F+  P
Sbjct: 576 EKIFELEP 583


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/666 (32%), Positives = 354/666 (53%), Gaps = 87/666 (13%)

Query: 37  MITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSH 96
           M+ TGFI+ T+  ++L+   +  P   + ++ R IF     F E  + F+WN +I+ Y  
Sbjct: 1   MLLTGFIRETYAASRLIKFSTHFPFIHI-DYTRRIF----NFIENTNCFMWNMMIRAYIQ 55

Query: 97  GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFL 156
              P  A  ++  ML N +  D ++  L+++ACS      E  Q+H  + K+ F SD+++
Sbjct: 56  TNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYV 115

Query: 157 QNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR----------- 205
           +N LI+ +  C  +  A ++F++  + DSVS+NS++ GY++ GN+E A+           
Sbjct: 116 RNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSI 175

Query: 206 --------------------ELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM 245
                               +LFD M   E+++++W++++  + Q     + A + F  M
Sbjct: 176 IASNSMIVLFGMRGLVVEACKLFDEM--LEKDMVTWSALIACFQQ-NEMYEEAIRTFVGM 232

Query: 246 ---------------------------------------PERDLISWNSMLHGCVKCGKM 266
                                                   E  +   N++++   KCG +
Sbjct: 233 HKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDI 292

Query: 267 DDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNG 326
             A+ LFD+    D++SW +MI GY K   VD A+ +FD MP++DVV+ ++M+ GY +N 
Sbjct: 293 MVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQND 352

Query: 327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG 386
              + L +F  MQ   +  PD+ +LV V+SA A+L  +++G  +H Y++++  ++N   G
Sbjct: 353 LFDETLALFQEMQMSGF-KPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILG 411

Query: 387 VALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE 446
             LIDMY KCG +E A++VF  + +  +  WNA+I GLA++GL E + D+   M++  + 
Sbjct: 412 TTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVT 471

Query: 447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARN 506
           P++ITF G+L AC H GLV EG   F  M   HK++P ++HYGCMVD+LGRAG ++ A  
Sbjct: 472 PNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEE 531

Query: 507 LIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGM 566
           L+  MPM P+   W  LL AC+ + +  +G  V + LI +   +   +VLLSN++A  G 
Sbjct: 532 LLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGK 591

Query: 567 WNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM------ 620
           W+D   +R MM +  + K+PGCS IE  GV+HEF   DK+   +  I  ML  M      
Sbjct: 592 WDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKL 651

Query: 621 --WTPD 624
             +TPD
Sbjct: 652 EGYTPD 657



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 129/520 (24%), Positives = 237/520 (45%), Gaps = 82/520 (15%)

Query: 6   NYNQPCNSTQSTLLLLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFS----- 57
           NY  P        LL++ C   ++  +  Q+H  ++  GF  + ++   L+  FS     
Sbjct: 78  NYTYP--------LLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNM 129

Query: 58  SSPCTPLTE------------FARYIFFK--------YHAFREK---------------- 81
           +  C    E             A YI           YH   E+                
Sbjct: 130 TDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRG 189

Query: 82  --------------KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
                         KD   W+A+I  +      +EA+  F  M   GV VD+  A   L 
Sbjct: 190 LVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALS 249

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           AC+ L ++  G  IH L  K+   S + LQN LI +Y +CG +  AR+LFD+  + D +S
Sbjct: 250 ACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLIS 309

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP- 246
           +NSMI GY+K   +++A+ +FDSMP  E++++SW+S+++GYAQ          +F++M  
Sbjct: 310 WNSMISGYLKCNLVDNAKAIFDSMP--EKDVVSWSSMISGYAQ-NDLFDETLALFQEMQM 366

Query: 247 ---ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDI 299
              + D  +  S++  C +   ++  + +   + +     +V+    +ID Y K G V+ 
Sbjct: 367 SGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVET 426

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           A  +F  M ++ +   NA++ G   NG    +L++F NM+ + ++ P++ + + VL A  
Sbjct: 427 ALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMK-KCHVTPNEITFMGVLGACR 485

Query: 360 QLGHIDKGV-AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHW 417
            +G +D+G    +  +   +   N KH   ++D+  + G ++ A ++  ++     V  W
Sbjct: 486 HMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATW 545

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            A++     HG  E+   +  ++  + ++PD   F  LL+
Sbjct: 546 GALLGACKKHGDSEMGRRVGRKL--IELQPDHDGFHVLLS 583


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 220/643 (34%), Positives = 358/643 (55%), Gaps = 49/643 (7%)

Query: 20  LLRKCKTLN----DVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF--- 72
           LL  C  L     DV  +HA +I +GF     +  +L+ +++   C  L E  R +F   
Sbjct: 25  LLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAK--CGSL-EDGRQLFDKM 81

Query: 73  -----FKYHA-----------------FRE--KKDPFLWNAIIKTYSHGLDPKEALVMFC 108
                F +++                 FR   ++D   WN+++  ++     +EAL  F 
Sbjct: 82  PQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFA 141

Query: 109 LMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCG 168
           +M   G  +++++ +  L ACS L  +  G+QIH L+ K    SD+++ + L+ +Y +CG
Sbjct: 142 MMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCG 201

Query: 169 YLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM--PIRERNLISWNSVLN 226
            +  A+Q+FD+MG R+ VS+NS+I  Y ++G    A ++F  M     E + ++  SV++
Sbjct: 202 NVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVIS 261

Query: 227 GYAQLKSGLQFAWQIFEKMPE-----RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV 281
             A L S ++   ++  ++ +      D+I  N+ +    KC ++ +A+ +FD MP R+V
Sbjct: 262 ACASL-SAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNV 320

Query: 282 VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
           ++  +M+ GYA       AR +F +M +R+VV+ NA++ GY +NG + +AL +F  ++ E
Sbjct: 321 IAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRE 380

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH------GVALIDMYSK 395
             + P   +   +L A A L  +  G+  H ++ K  F            G +LIDMY K
Sbjct: 381 -SVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVK 439

Query: 396 CGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGL 455
           CG +E    VF ++ +     WNAMI G A +G G  A +L  EM     +PD IT  G+
Sbjct: 440 CGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGV 499

Query: 456 LNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEP 515
           L+AC HAG V+EG   F  M R   + P   HY CMVD+LGRAG +E A+++IE+MP++P
Sbjct: 500 LSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQP 559

Query: 516 NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRS 575
           + VIW +LL+AC+ + N+ +G+ VA+ L  +++SNS  YVLLSNM+A LG W DA  VR 
Sbjct: 560 DSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVRK 619

Query: 576 MMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           +M++  + K PGCSWI++ G  H F V+DKS  + + I+ +LD
Sbjct: 620 LMRKEGVTKQPGCSWIKIPGHAHVFMVKDKSHPRKKQIHSLLD 662


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/540 (37%), Positives = 317/540 (58%), Gaps = 12/540 (2%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   WN I+  Y+      +A  +F  M +     +  S + +L A  +   +EE   
Sbjct: 149 ERDVCSWNTILSGYAQNGCVDDARRVFDRMPEK----NDVSWNALLSAYVQNSKLEEACV 204

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           + G     A    L   NCL+  +V+   +  ARQ FD M +RD VS+N++I GY ++G 
Sbjct: 205 LFGSRENWA----LVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGE 260

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
           I+ AR+LFD  P+ +  + +W ++++GY Q +  ++ A ++F++MPER+ +SWN+ML G 
Sbjct: 261 IDEARQLFDESPVHD--VFTWTAMVSGYIQNRM-VEEARELFDRMPERNEVSWNAMLAGY 317

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
           V+  +++ A+ LFD MP R+V +W  MI GYA+ G++  A+ LFD+MPKRD V+  AM+ 
Sbjct: 318 VQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIA 377

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           GY ++G+S +AL +F  M+ E     + +S    LS  A +  ++ G  +H  L K  + 
Sbjct: 378 GYSQSGHSYEALRLFVLMEREGG-RLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYE 436

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
                G AL+ MY KCGSIE A  +F+++    +  WN MI G + HG GE A      M
Sbjct: 437 TGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESM 496

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500
           +R  ++PDD T   +L+AC+H GLV +G   F  M + + + P  QHY CMVD+LGRAG 
Sbjct: 497 KREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGL 556

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560
           +E A NL+++MP EP+  IW TLL A R + N  + E  A  +  M+  NS  YVLLSN+
Sbjct: 557 LEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNL 616

Query: 561 FAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +A  G W D  ++R  M+++ +KK+PG SWIE++   H F V D+   +  +I+  L+++
Sbjct: 617 YASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDL 676



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 133/459 (28%), Positives = 219/459 (47%), Gaps = 83/459 (18%)

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
           SD+   N  IS Y+R G    A ++F +M    SVSYN+MI GY+++G  E AR LFD M
Sbjct: 57  SDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEM 116

Query: 212 PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQA 271
           P  ER+L+SWN ++ GY + ++ L  A ++FE+MPERD+ SWN++L G  + G +DDA+ 
Sbjct: 117 P--ERDLVSWNVMIKGYVRNRN-LGKARELFERMPERDVCSWNTILSGYAQNGCVDDARR 173

Query: 272 LFDKMPKRD-------------------------------VVSWANMIDGYAKLGRVDIA 300
           +FD+MP+++                               +VSW  ++ G+ K  ++  A
Sbjct: 174 VFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEA 233

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
           R+ FD M  RDVV+ N ++ GY +NG   +A ++FD    E  +H D  +   ++S   Q
Sbjct: 234 RQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFD----ESPVH-DVFTWTAMVSGYIQ 288

Query: 361 LGHIDKGVAI-HRYLEKDQFSLNG-----------KHGVALIDM---------------Y 393
              +++   +  R  E+++ S N            +    L D+               Y
Sbjct: 289 NRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGY 348

Query: 394 SKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
           ++CG I  A  +F+++       W AMI G +  G    A  L + MER     +  +F+
Sbjct: 349 AQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFS 408

Query: 454 GLLNACAHAGLVKEGLLCFELMRRIH-KLEPELQHYGCMVD-----ILGRAGHIEAARNL 507
             L+ CA        ++  EL +++H +L       GC V      +  + G IE A +L
Sbjct: 409 SALSTCAD-------VVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDL 461

Query: 508 IEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
            ++M  + + V W T+++    Y     GE   +    M
Sbjct: 462 FKEMAGK-DIVSWNTMIAG---YSRHGFGEEALRFFESM 496



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 185/355 (52%), Gaps = 36/355 (10%)

Query: 179 KMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQF 237
           K G  D   +N  I  Y+++G    A  +F  MP    + +S+N++++GY  L++G  + 
Sbjct: 53  KSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMP--RWSSVSYNAMISGY--LRNGEFEL 108

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
           A  +F++MPERDL+SWN M+ G V+   +  A+ LF++MP+RDV SW  ++ GYA+ G V
Sbjct: 109 ARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCV 168

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
           D ARR+FD MP+++ V+ NA++  YV+N    +A        C L+   ++ +LV     
Sbjct: 169 DDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEA--------CVLFGSRENWALVSWNCL 220

Query: 358 IAQLGHIDKGVAIHRYLE----KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
           +       K V   ++ +    +D  S N      +I  Y++ G I+ A ++F++     
Sbjct: 221 LGGFVKKKKIVEARQFFDSMKVRDVVSWN-----TIITGYAQNGEIDEARQLFDESPVHD 275

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE 473
           V  W AM++G   + + E A +L   M     E +++++  +L     AG V+   +  E
Sbjct: 276 VFTWTAMVSGYIQNRMVEEARELFDRMP----ERNEVSWNAML-----AGYVQGERV--E 324

Query: 474 LMRRIHKLEP--ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           + + +  + P   +  +  M+    + G I  A+NL + MP + + V W  +++ 
Sbjct: 325 MAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 378


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 202/541 (37%), Positives = 321/541 (59%), Gaps = 16/541 (2%)

Query: 82  KDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +D   +N +I +++ HGL     + +     D     D  S + +L A  R G +EE   
Sbjct: 129 RDSVTYNVMISSHANHGL-----VSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEA-- 181

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
             GL        D    N L+S YV+ G +  AR+LFD+M  RD VS+N M+ GY + G+
Sbjct: 182 -RGLFNSRT-EWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGD 239

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
           +  AR LFD+ P+R  ++ +W +V++GYAQ    L+ A ++F+ MPER+ +SWN+M+   
Sbjct: 240 MVEARRLFDAAPVR--DVFTWTAVVSGYAQ-NGMLEEARRVFDAMPERNAVSWNAMVAAY 296

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
           ++   MD+A+ LF+ MP R+V SW  M+ GYA+ G ++ A+ +FD MP++D V+  AM+ 
Sbjct: 297 IQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLA 356

Query: 321 GYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF 379
            Y + G S + L++F  M +C  ++  + ++   VLS  A +  ++ G+ +H  L +  +
Sbjct: 357 AYSQGGCSEETLQLFIEMGRCGEWV--NRSAFACVLSTCADIAALECGMQLHGRLIRAGY 414

Query: 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLME 439
            +    G AL+ MY KCG++E+A   FE++E+  V  WN MI G A HG G+ A ++   
Sbjct: 415 GVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDM 474

Query: 440 MERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG 499
           M   S +PDDIT  G+L AC+H+GLV++G+  F  M     +  + +HY CM+D+LGRAG
Sbjct: 475 MRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAG 534

Query: 500 HIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559
            +  A +L++DMP EP+  +W  LL A R + N  +G   A+ +  ++  N+  YVLLSN
Sbjct: 535 RLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSN 594

Query: 560 MFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDN 619
           ++A  G W DAR++R MM+ER +KK+PG SWIE++  VH F   D    +   IY  L++
Sbjct: 595 IYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLED 654

Query: 620 M 620
           +
Sbjct: 655 L 655



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 134/497 (26%), Positives = 228/497 (45%), Gaps = 50/497 (10%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           ++   N  I+ ++R G +  A +LF  M  R + +YN+M+ GY  +G +  A  LF ++P
Sbjct: 37  EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP 96

Query: 213 IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
            R  N  S+N++L+  A + S L  A  +F++MP RD +++N M+      G +  A+  
Sbjct: 97  -RPDNY-SYNTLLHALA-VSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHY 153

Query: 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
           FD  P++D VSW  M+  Y + GRV+ AR LF+   + D ++ NA+M GYV+ G   +A 
Sbjct: 154 FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEAR 213

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE----KDQFSLNGKHGVA 388
           E+FD M        D  S  I++S  A+ G +   V   R  +    +D F+       A
Sbjct: 214 ELFDRMPGR-----DVVSWNIMVSGYARRGDM---VEARRLFDAAPVRDVFTW-----TA 260

Query: 389 LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD 448
           ++  Y++ G +E A +VF+ + + +   WNAM+       + + A +L   M   ++   
Sbjct: 261 VVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNV--- 317

Query: 449 DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLI 508
             ++  +L   A AG+++E    F+ M      + +   +  M+    + G  E    L 
Sbjct: 318 -ASWNTMLTGYAQAGMLEEAKAVFDTM-----PQKDAVSWAAMLAAYSQGGCSEETLQLF 371

Query: 509 EDMPM---EPNDVIWRTLLSACRNYENLNVGEPVAKHLI--GMDSSNSSSYVLLSNMFAG 563
            +M       N   +  +LS C +   L  G  +   LI  G          LL+ M+  
Sbjct: 372 IEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLA-MYFK 430

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSW-IELEGVVHEFFVRDKSRLQVRDIYYMLDNMWT 622
            G   DAR     M+ER++      SW   + G     F   K  L++ D+  M      
Sbjct: 431 CGNMEDARNAFEEMEERDV-----VSWNTMIAGYARHGF--GKEALEIFDM--MRTTSTK 481

Query: 623 PDSVA-----TSCTHYG 634
           PD +       +C+H G
Sbjct: 482 PDDITLVGVLAACSHSG 498



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 120/245 (48%), Gaps = 21/245 (8%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +KD   W A++  YS G   +E L +F  M   G  V++ + + VL  C+ +  +E G+Q
Sbjct: 345 QKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQ 404

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +HG L +  +G   F+ N L+++Y +CG +E AR  F++M  RD VS+N+MI GY + G 
Sbjct: 405 LHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGF 464

Query: 201 IESARELFDSMPIRER-----NLISWNSVLNGYAQLKSGLQFAWQIFEKM-----PERDL 250
            + A E+FD M           L+   +  +    ++ G+ + + +         PE   
Sbjct: 465 GKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEH-- 522

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMP-KRDVVSW-----ANMIDGYAKLGRVDIARRLF 304
             +  M+    + G++ +A  L   MP + D   W     A+ I    +LGR   A ++F
Sbjct: 523 --YTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGR-SAAEKIF 579

Query: 305 DEMPK 309
           +  P+
Sbjct: 580 ELEPE 584



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 152/341 (44%), Gaps = 34/341 (9%)

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
           E ++I  N  +   ++ G++ DA+ LF  MP+R   ++  M+ GY+  GR+ +A  LF  
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA 94

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           +P+ D  + N ++     +     A  +FD M        D  +  +++S+ A  G +  
Sbjct: 95  IPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVR-----DSVTYNVMISSHANHGLVS- 148

Query: 367 GVAIHRY---LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
            +A H +    EKD  S NG     ++  Y + G +E A  +F    +     WNA+++G
Sbjct: 149 -LARHYFDLAPEKDAVSWNG-----MLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSG 202

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
               G    A +L   M       D +++  +++  A  G + E        RR+    P
Sbjct: 203 YVQWGKMSEARELFDRMPGR----DVVSWNIMVSGYARRGDMVEA-------RRLFDAAP 251

Query: 484 --ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
             ++  +  +V    + G +E AR + + MP E N V W  +++A      ++     AK
Sbjct: 252 VRDVFTWTAVVSGYAQNGMLEEARRVFDAMP-ERNAVSWNAMVAAYIQRRMMD----EAK 306

Query: 542 HLIG-MDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581
            L   M   N +S+  +   +A  GM  +A+ V   M +++
Sbjct: 307 ELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKD 347



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 15/188 (7%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           Q+H R+I  G+     +   L+A +    C  + E AR  F +     E++D   WN +I
Sbjct: 404 QLHGRLIRAGYGVGCFVGNALLAMYFK--CGNM-EDARNAFEEM----EERDVVSWNTMI 456

Query: 92  KTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ-IHGLLRKVA 149
             Y+ HG   KEAL +F +M       D  +   VL ACS  GL+E+G+   + +     
Sbjct: 457 AGYARHGFG-KEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFG 515

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMIDGYVKSGNIE----SA 204
             +      C+I L  R G L  A  L   M    DS  + +++       N E    +A
Sbjct: 516 VTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAA 575

Query: 205 RELFDSMP 212
            ++F+  P
Sbjct: 576 EKIFELEP 583


>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 190/448 (42%), Positives = 279/448 (62%), Gaps = 6/448 (1%)

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA 229
           + +ARQLFD++   +   +NSM  GY +S   ES RE+F  M   ERN+++W S++NGY 
Sbjct: 1   MTYARQLFDQIPDPNIALWNSMFRGYAQS---ESYREIFCEM--FERNVVAWTSMINGYI 55

Query: 230 QLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMID 289
            L + L  A ++F+  PERD++ WN M+ G ++ G M +A+ LF +MP RDV+ W  ++ 
Sbjct: 56  -LSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLK 114

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
           GYA  G V+    LF+EMP+R++ + NA++GGY  NG   + L  F  M  E  + P+DA
Sbjct: 115 GYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDA 174

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           +LV VLSA A+LG +D G  +H Y E      N   G AL+DMY+KCG IENAI VF  +
Sbjct: 175 TLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGM 234

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
           +   +  WN +I GLA+H  G  A +L  +M+    +PD ITF G+L AC H GLV++G 
Sbjct: 235 DTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGF 294

Query: 470 LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRN 529
             F+ M   + + P+++HYGCMVD+L RAG +E A   +  MP+E + VIW  LL ACR 
Sbjct: 295 AYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRI 354

Query: 530 YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCS 589
           Y+N+ + E   + LI ++  N ++YV+LSN++   G W D  R++  M++   KKLPGCS
Sbjct: 355 YKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCS 414

Query: 590 WIELEGVVHEFFVRDKSRLQVRDIYYML 617
            IE+   V EF+  D+   Q+ +IY +L
Sbjct: 415 LIEVNDAVVEFYSLDERHPQIEEIYGVL 442



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 184/388 (47%), Gaps = 47/388 (12%)

Query: 78  FREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVS-----VDKFSASLVLKACS 130
           F +  DP   LWN++ + Y+     +E   +FC M +  V      ++ +  S  L +  
Sbjct: 8   FDQIPDPNIALWNSMFRGYAQSESYRE---IFCEMFERNVVAWTSMINGYILSADLVSAR 64

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
           RL               +A   D+ L N ++S Y+  G +  AR+LF +M  RD + +N+
Sbjct: 65  RL-------------FDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNT 111

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF-AWQIFEKMPERD 249
           ++ GY  +GN+E+   LF+ MP  ERN+ SWN+++ GYA   +GL F     F++M    
Sbjct: 112 VLKGYATNGNVEALEGLFEEMP--ERNIFSWNALIGGYAH--NGLFFEVLGSFKRMLSES 167

Query: 250 LISWN-----SMLHGCVKCGKMDDAQALF----DKMPKRDVVSWANMIDGYAKLGRVDIA 300
            +  N     ++L  C + G +D  + +         K +V     ++D YAK G ++ A
Sbjct: 168 DVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENA 227

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
             +F  M  +D+++ N ++GG   +     AL +F  M+      PD  + + +L A   
Sbjct: 228 ISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMK-NAGQKPDGITFIGILCACTH 286

Query: 361 LGHIDKGVAIHRYLEKDQFSLNG-KHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDH 416
           +G ++ G A  + +  D   +   +H   ++DM ++ G +E A+    ++    DG +  
Sbjct: 287 MGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVI-- 344

Query: 417 WNAMINGLAIHG---LGELAFDLLMEME 441
           W  ++    I+    L ELA   L+E+E
Sbjct: 345 WAGLLGACRIYKNVELAELALQRLIELE 372



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 116/242 (47%), Gaps = 14/242 (5%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLML-DNGVSVDKFSASLVLKACSRLGLIEEGL 139
           +++ F WNA+I  Y+H     E L  F  ML ++ V  +  +   VL AC+RLG ++ G 
Sbjct: 134 ERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGK 193

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
            +H          ++++ N L+ +Y +CG +E A  +F  M  +D +S+N++I G     
Sbjct: 194 WVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHS 253

Query: 200 NIESARELFDSM--PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
               A  LF  M    ++ + I++  +L     +   ++  +  F+ M +  LI      
Sbjct: 254 RGADALNLFFQMKNAGQKPDGITFIGILCACTHMGL-VEDGFAYFQSMADDYLIMPQIEH 312

Query: 258 HGCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIA----RRLFDEM 307
           +GC+     + G+++ A A   KMP + D V WA ++        V++A    +RL +  
Sbjct: 313 YGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELE 372

Query: 308 PK 309
           PK
Sbjct: 373 PK 374


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 202/541 (37%), Positives = 322/541 (59%), Gaps = 16/541 (2%)

Query: 82  KDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +D   +N +I +++ HGL     + +     D     D  S + +L A  R G +EE   
Sbjct: 4   RDSVTYNVMISSHANHGL-----VSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEA-- 56

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
             GL        D+   N L+S YV+ G +  AR+LFD+M  RD VS+N M+ GY + G+
Sbjct: 57  -RGLFNSRT-EWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGD 114

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
           +  AR LFD+ P+R  ++ +W +V++GYAQ    L+ A ++F+ MPER+ +SWN+M+   
Sbjct: 115 MVEARRLFDAAPVR--DVFTWTAVVSGYAQ-NGMLEEARRVFDAMPERNAVSWNAMVAAY 171

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
           ++   MD+A+ LF+ MP R+V SW  M+ GYA+ G ++ A+ +FD MP++D V+  AM+ 
Sbjct: 172 IQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLA 231

Query: 321 GYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF 379
            Y + G S + L++F  M +C  ++  + ++   VLS  A +  ++ G+ +H  L +  +
Sbjct: 232 AYSQGGCSEETLQLFIEMGRCGEWV--NRSAFACVLSTCADIAALECGMQLHGRLIRAGY 289

Query: 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLME 439
            +    G AL+ MY KCG++E+A   FE++E+  V  WN MI G A HG G+ A ++   
Sbjct: 290 GVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDM 349

Query: 440 MERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG 499
           M   S +PDDIT  G+L AC+H+GLV++G+  F  M     +  + +HY CM+D+LGRAG
Sbjct: 350 MRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAG 409

Query: 500 HIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559
            +  A +L++DMP EP+  +W  LL A R + N  +G   A+ +  ++  N+  YVLLSN
Sbjct: 410 RLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSN 469

Query: 560 MFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDN 619
           ++A  G W DAR++R MM+ER +KK+PG SWIE++  VH F   D    +   IY  L++
Sbjct: 470 IYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLED 529

Query: 620 M 620
           +
Sbjct: 530 L 530



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/358 (32%), Positives = 181/358 (50%), Gaps = 36/358 (10%)

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAW 239
           M +RDSV+YN MI  +   G +  AR  FD  P  E++ +SWN +L  Y +    ++ A 
Sbjct: 1   MPVRDSVTYNVMISSHANHGLVSLARHYFDLAP--EKDAVSWNGMLAAYVR-NGRVEEAR 57

Query: 240 QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDI 299
            +F    E D+ISWN+++ G V+ GKM +A+ LFD+MP RDVVSW  M+ GYA+ G +  
Sbjct: 58  GLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVE 117

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           ARRLFD  P RDV    A++ GY +NG   +A  +FD M        +  S   +++A  
Sbjct: 118 ARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP-----ERNAVSWNAMVAAYI 172

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVA----LIDMYSKCGSIENAIKVFEQIEDGSVD 415
           Q   +D+         K+ F++     VA    ++  Y++ G +E A  VF+ +      
Sbjct: 173 QRRMMDEA--------KELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAV 224

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL-LCFEL 474
            W AM+   +  G  E    L +EM R     +   F  +L+ CA    ++ G+ L   L
Sbjct: 225 SWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRL 284

Query: 475 MRRIHKLEPELQHYGCMVD-----ILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSA 526
           +R  + +       GC V      +  + G++E ARN  E+  ME  DV+ W T+++ 
Sbjct: 285 IRAGYGV-------GCFVGNALLAMYFKCGNMEDARNAFEE--MEERDVVSWNTMIAG 333



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 176/405 (43%), Gaps = 47/405 (11%)

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
           MP RD +++N M+      G +  A+  FD  P++D VSW  M+  Y + GRV+ AR LF
Sbjct: 1   MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF 60

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
           +   + DV++ NA+M GYV+ G   +A E+FD M        D  S  I++S  A+ G +
Sbjct: 61  NSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGR-----DVVSWNIMVSGYARRGDM 115

Query: 365 DKGVAIHRYLE----KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
              V   R  +    +D F+       A++  Y++ G +E A +VF+ + + +   WNAM
Sbjct: 116 ---VEARRLFDAAPVRDVFTW-----TAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAM 167

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           +       + + A +L   M   ++   +   TG     A AG+++E    F+ M     
Sbjct: 168 VAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGY----AQAGMLEEAKAVFDTMP---- 219

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPM---EPNDVIWRTLLSACRNYENLNVGE 537
            + +   +  M+    + G  E    L  +M       N   +  +LS C +   L  G 
Sbjct: 220 -QKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGM 278

Query: 538 PVAKHLI--GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSW-IELE 594
            +   LI  G          LL+ M+   G   DAR     M+ER++      SW   + 
Sbjct: 279 QLHGRLIRAGYGVGCFVGNALLA-MYFKCGNMEDARNAFEEMEERDV-----VSWNTMIA 332

Query: 595 GVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVA-----TSCTHYG 634
           G     F   K  L++ D+  M      PD +       +C+H G
Sbjct: 333 GYARHGF--GKEALEIFDM--MRTTSTKPDDITLVGVLAACSHSG 373



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 120/245 (48%), Gaps = 21/245 (8%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +KD   W A++  YS G   +E L +F  M   G  V++ + + VL  C+ +  +E G+Q
Sbjct: 220 QKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQ 279

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +HG L +  +G   F+ N L+++Y +CG +E AR  F++M  RD VS+N+MI GY + G 
Sbjct: 280 LHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGF 339

Query: 201 IESARELFDSMPIRER-----NLISWNSVLNGYAQLKSGLQFAWQIFEKM-----PERDL 250
            + A E+FD M           L+   +  +    ++ G+ + + +         PE   
Sbjct: 340 GKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEH-- 397

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMP-KRDVVSW-----ANMIDGYAKLGRVDIARRLF 304
             +  M+    + G++ +A  L   MP + D   W     A+ I    +LGR   A ++F
Sbjct: 398 --YTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGR-SAAEKIF 454

Query: 305 DEMPK 309
           +  P+
Sbjct: 455 ELEPE 459



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 15/188 (7%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           Q+H R+I  G+     +   L+A +    C  + E AR  F +     E++D   WN +I
Sbjct: 279 QLHGRLIRAGYGVGCFVGNALLAMYFK--CGNM-EDARNAFEEM----EERDVVSWNTMI 331

Query: 92  KTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ-IHGLLRKVA 149
             Y+ HG   KEAL +F +M       D  +   VL ACS  GL+E+G+   + +     
Sbjct: 332 AGYARHGFG-KEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFG 390

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMIDGYVKSGNIE----SA 204
             +      C+I L  R G L  A  L   M    DS  + +++       N E    +A
Sbjct: 391 VTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAA 450

Query: 205 RELFDSMP 212
            ++F+  P
Sbjct: 451 EKIFELEP 458


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 215/616 (34%), Positives = 335/616 (54%), Gaps = 55/616 (8%)

Query: 18  LLLLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
           L +++ C + +D+    ++H  +I  GF  +  + T L + ++   C  L E AR +F +
Sbjct: 124 LSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTK--CGSL-ENARQVFDR 180

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
                 K+D   WNAII  YS    P EAL +F  M  NG+  +  +   V+  C+ L  
Sbjct: 181 M----PKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLA 236

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           +E+G QIH    +    SD+ + N L+++Y +C                           
Sbjct: 237 LEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKC--------------------------- 269

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL---- 250
               GN+ +A +LF+ MPIR+  + SWN+++ GY+ L S    A   F +M  R +    
Sbjct: 270 ----GNVNTAHKLFERMPIRD--VASWNAIIGGYS-LNSQHHEALAFFNRMQVRGIKPNS 322

Query: 251 ISWNSMLHGCVKCGKMDDAQ-----ALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFD 305
           I+  S+L  C     ++  Q     A+       DVV  A +++ YAK G V+ A +LF+
Sbjct: 323 ITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNA-LVNMYAKCGNVNSAYKLFE 381

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
            MPK++VVA NA++ GY ++G+  +AL +F  MQ +  + PD  ++V VL A A    ++
Sbjct: 382 RMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQ-GIKPDSFAIVSVLPACAHFLALE 440

Query: 366 KGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
           +G  IH Y  +  F  N   G  L+D+Y+KCG++  A K+FE++ +  V  W  MI    
Sbjct: 441 QGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYG 500

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL 485
           IHG GE A  L  +M+    + D I FT +L AC+HAGLV +GL  F+ M+  + L P+L
Sbjct: 501 IHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKL 560

Query: 486 QHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIG 545
           +HY C+VD+LGRAGH++ A  +I++M +EP+  +W  LL ACR + N+ +GE  AKHL  
Sbjct: 561 EHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFE 620

Query: 546 MDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDK 605
           +D  N+  YVLLSN++A    W D  ++R MMKE+ +KK PGCS + +   V  F V D+
Sbjct: 621 LDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDR 680

Query: 606 SRLQVRDIYYMLDNMW 621
           +  Q   IY ML+ ++
Sbjct: 681 THPQSEQIYAMLEILY 696


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 216/602 (35%), Positives = 329/602 (54%), Gaps = 32/602 (5%)

Query: 26  TLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPF 85
           TL    QIHA +I T F    H   ++          PL +F   +              
Sbjct: 55  TLEQTKQIHAHIIKTHF----HHALQI----------PLNDFPSGL----------SPSA 90

Query: 86  LWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
            WN +I +Y+    P+ AL ++  +      VD F A  VLKAC ++   + G +IHG +
Sbjct: 91  QWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFV 150

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
            K     D+F+ N L+ +Y  C  +E+AR +FDKM  RD VS+++MI    ++   + A 
Sbjct: 151 LKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMAL 210

Query: 206 ELF---DSMPIR--ERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPER-DLISWNSMLH 258
           EL    + M +R  E  ++S  ++    A ++ G    A+ I     E   + +  ++L 
Sbjct: 211 ELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLD 270

Query: 259 GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
              KCG +  A+ LF+ + ++ VVSW  MI G  +  R++ AR LFD    RDV+   AM
Sbjct: 271 MYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAM 330

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
           +  Y +     +A  +FD M+    + P   ++V +LS  A  G +D G  +H Y++K++
Sbjct: 331 LSAYAQANCIDQAFNLFDQMRTS-GVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKER 389

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
             ++     AL+DMY+KCG I  A ++F +     +  WNA+I G A+HG GE A D+  
Sbjct: 390 VEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFA 449

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
           EMER  ++P+DITF GLL+AC+HAGLV EG   FE M     L P+++HYGCMVD+LGRA
Sbjct: 450 EMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRA 509

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           G ++ A  +I+ MP++PN ++W  L++ACR ++N  +GE  A  L+ ++  N    VL+S
Sbjct: 510 GLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMS 569

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           N++A    W+DA  VR  MK   +KK PG S IE+ G VHEF + D+S  Q+R I  ML 
Sbjct: 570 NIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLA 629

Query: 619 NM 620
            M
Sbjct: 630 EM 631


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 200/540 (37%), Positives = 315/540 (58%), Gaps = 12/540 (2%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   WNA++  Y+     KEA  +F    D     +  S + +L A  + G IE+  +
Sbjct: 139 ERDVVSWNAMLSGYAQNGYVKEAKEIF----DEMPCKNSISWNGMLAAYVQNGRIEDARR 194

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
               L +     +L   NC++  YV+   L  AR +FD+M  RD VS+N+MI GY ++G 
Sbjct: 195 ----LFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGE 250

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
           +  A+ LF+  P+R+  + +W ++++GY Q    L  A ++F+ MPE++ +SWN+++ G 
Sbjct: 251 LLEAQRLFEESPVRD--VFTWTAMVSGYVQ-NGMLDEARRVFDGMPEKNSVSWNAIIAGY 307

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
           V+C +MD A+ LF+ MP ++V SW  MI GYA+ G +  AR  FD MP+RD ++  A++ 
Sbjct: 308 VQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIA 367

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           GY ++GY  +AL +F  M+ +     + ++    LS  A++  ++ G  +H  + K    
Sbjct: 368 GYAQSGYGEEALHLFVEMKRDGE-RLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLE 426

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
                G AL+ MY KCG+I++A  VFE IE+  V  WN MI G A HG G+ A  L   M
Sbjct: 427 SGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESM 486

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500
           ++  I PDD+T  G+L+AC+H GLV +G   F  M + + +    +HY CM+D+LGRAG 
Sbjct: 487 KKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGR 546

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560
           ++ A+NL+++MP EP+   W  LL A R + N  +GE  AK +  M+  NS  YVLLSN+
Sbjct: 547 LDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNL 606

Query: 561 FAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +A  G W D  R+R  M++R +KK+PG SW+E++  +H F V D    +   IY  L+ +
Sbjct: 607 YAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEEL 666



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 148/462 (32%), Positives = 221/462 (47%), Gaps = 63/462 (13%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           DL   N +IS  VR   L  AR LFD+M  RD VS+N+M+ GY ++G ++ A+E+FD MP
Sbjct: 110 DLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMP 169

Query: 213 IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
              +N ISWN +L  Y Q    ++ A ++FE   + +LISWN M+ G VK  ++ DA+ +
Sbjct: 170 C--KNSISWNGMLAAYVQ-NGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGI 226

Query: 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
           FD+MP+RD VSW  MI GYA+ G +  A+RLF+E P RDV    AM+ GYV+NG   +A 
Sbjct: 227 FDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEAR 286

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDM 392
            +FD M        +  S   +++   Q   +D+     R L +     N      +I  
Sbjct: 287 RVFDGMP-----EKNSVSWNAIIAGYVQCKRMDQA----RELFEAMPCQNVSSWNTMITG 337

Query: 393 YSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITF 452
           Y++ G I  A   F+++       W A+I G A  G GE A  L +EM+R     +  TF
Sbjct: 338 YAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTF 397

Query: 453 TGLLNACA-----------HAGLVKEGL------------------------LCFELMRR 477
           T  L+ CA           H  +VK GL                        + FE +  
Sbjct: 398 TSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIE- 456

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPME---PNDVIWRTLLSACRNYENLN 534
               E E+  +  M+    R G  + A  L E M      P+DV    +LSAC +   ++
Sbjct: 457 ----EKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVD 512

Query: 535 VGEPVAKHLIGMD-----SSNSSSYVLLSNMFAGLGMWNDAR 571
            G    ++   M      ++NS  Y  + ++    G  +DA+
Sbjct: 513 KG---TEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQ 551



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 163/316 (51%), Gaps = 32/316 (10%)

Query: 217 NLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK 275
           +++ WN  +  +  +++G    A ++F  MP R  ISWN+M+ GC+   K   A+ LF+K
Sbjct: 48  DIVKWNIAITNH--MRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEK 105

Query: 276 MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
           MP RD+VSW  MI G  +   +  AR LFD+MP+RDVV+ NAM+ GY +NGY  +A EIF
Sbjct: 106 MPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIF 165

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
           D M C+     +  S   +L+A  Q G I+   A   +  K  + L   +   ++  Y K
Sbjct: 166 DEMPCK-----NSISWNGMLAAYVQNGRIED--ARRLFESKADWELISWN--CMMGGYVK 216

Query: 396 CGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP---DDITF 452
              + +A  +F+++ +     WN MI+G A +G        L+E +RL  E    D  T+
Sbjct: 217 RNRLVDARGIFDRMPERDEVSWNTMISGYAQNG-------ELLEAQRLFEESPVRDVFTW 269

Query: 453 TGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG--RAGHIEAARNLIED 510
           T ++     +G V+ G+L  +  RR+    PE         I G  +   ++ AR L E 
Sbjct: 270 TAMV-----SGYVQNGML--DEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEA 322

Query: 511 MPMEPNDVIWRTLLSA 526
           MP + N   W T+++ 
Sbjct: 323 MPCQ-NVSSWNTMITG 337



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 94/204 (46%), Gaps = 15/204 (7%)

Query: 16  STLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           STL    +   L    Q+H R++  G     ++   L+  +    C  + +   YI F+ 
Sbjct: 399 STLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCK--CGNIDDA--YIVFE- 453

Query: 76  HAFREKKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
               E+K+   WN +I  Y+ HG   KEAL++F  M   G+  D  +   VL ACS  GL
Sbjct: 454 --GIEEKEVVSWNTMIAGYARHGFG-KEALMLFESMKKTGILPDDVTMVGVLSACSHTGL 510

Query: 135 IEEGLQ-IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMI 192
           +++G +  + + +     ++     C+I L  R G L+ A+ L   M    D+ ++ +++
Sbjct: 511 VDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALL 570

Query: 193 DGYVKSGNIE----SARELFDSMP 212
                 GN E    +A+ +F+  P
Sbjct: 571 GASRIHGNTELGEKAAKMIFEMEP 594


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 215/613 (35%), Positives = 350/613 (57%), Gaps = 55/613 (8%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVA--SFSSSPCTPLTEFARYIFFKY 75
           LL L KC T++ + QIHA+M+ T    +    +K+VA  +   S   P   +AR +F + 
Sbjct: 44  LLSLEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLP---YARLVFNQI 100

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
                    F  N+II+ Y++   P++A++ + LM+  G+  D+F+   + K+C   G++
Sbjct: 101 ----PNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC---GVL 153

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
            EG Q+H    K+ F SD ++QN L+++Y  CG L                         
Sbjct: 154 CEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLV------------------------ 189

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLI 251
                  SAR++FD M    ++++SW +++  YAQ     + A ++F +M     + + I
Sbjct: 190 -------SARKVFDKM--VNKSVVSWATMIGAYAQWDLPHE-AIKLFRRMEIASVKPNEI 239

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDV----VSWANMIDGYAKLGRVDIARRLFDEM 307
           +  ++L  C +   ++ A+ +   + +  +    V  + ++D Y K G   +AR LF++M
Sbjct: 240 TLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKM 299

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
           P++++   N M+ G+V +    +AL +F+ MQ    +  D  ++  +L A   LG ++ G
Sbjct: 300 PEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLS-GVKGDKVTMASLLIACTHLGALELG 358

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
             +H Y+EK++  ++   G AL+DMY+KCGSIE+A++VF+++ +  V  W A+I GLA+ 
Sbjct: 359 KWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMC 418

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           G G  A +L  EM+   ++PD ITF G+L AC+HAGLV EG+  F  M   + ++P ++H
Sbjct: 419 GQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEH 478

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
           YGCMVD+LGRAG I  A +LI++MPM P+  +   LLSACR + NL V E  A+ LI +D
Sbjct: 479 YGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELD 538

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
             N  +YVLLSN+++ +  W  A+++R +M ERN+KK PGCS IE+ GVVHEF   D S 
Sbjct: 539 PKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSH 598

Query: 608 LQVRDIYYMLDNM 620
            Q  +IY  LD+M
Sbjct: 599 PQSSEIYETLDDM 611


>gi|22293716|dbj|BAC10060.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
          Length = 631

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 226/623 (36%), Positives = 348/623 (55%), Gaps = 28/623 (4%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLV-ASFSS-SPCTPLTEFARYIF 72
           Q+ L +LR   +   + Q HAR++  G   +  L   LV A+FS+ SP        RY  
Sbjct: 3   QALLRILRTLGSTAHLTQAHARLLAAGLAASPRLLPALVAAAFSAHSP--------RYAA 54

Query: 73  FKYHAFREKKDPFLWNAIIK----------TYSHGLDPKEALVMFCLMLDNGVSVDKFSA 122
               A          N +++            +    P +AL  +  M   GV  + F+ 
Sbjct: 55  AALRAAGPAASTVSHNTLVERLAGARPRGRRPAPAPAPADALAAYAAMRAQGVPPNGFTF 114

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF-----ARQLF 177
           + +L+AC+ LGL      +HG + +  FGSD+F+QN L+ +Y RCG         ARQ+F
Sbjct: 115 TFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGGGGVGAARQVF 174

Query: 178 DKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF 237
           D+M  RD VS+NS++  Y+ SG+   A   F++MP  ERN++SWN+V+ G+A++   +  
Sbjct: 175 DEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMP--ERNVVSWNTVVAGFARMGD-MVT 231

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
           A  +F++MP R+ +SWN M+ G    G ++ A+++FD+M ++DVVSW  M+  YAK+G +
Sbjct: 232 ARAVFDRMPSRNAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGDL 291

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
           D    LFD MP +++V+ NAM+ GY  N    +AL  F  M  E    PD+A+LV V+SA
Sbjct: 292 DTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSA 351

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
            AQLG ++    I  ++ K    L    G ALIDM++KCG +  A  +F ++E   +  W
Sbjct: 352 CAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIFYKMETRCIITW 411

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
             MI+G A +GL   A  +   M R  ++ DD  F   L ACAH GL++EG   F  M  
Sbjct: 412 TTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFNEMVE 471

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
            + ++P ++HYGCMVD+LGRAG+++ A   IE MP+EP+ VIW TLL +C  + N  + E
Sbjct: 472 RYNIQPRMEHYGCMVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLCSCVAHGNAELIE 531

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVV 597
            V+K +  ++  NSS  VL+SN  A  G W+     R+ M+   ++K+PG S I++   V
Sbjct: 532 YVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGIEKVPGSSSIQVGSEV 591

Query: 598 HEFFVRDKSRLQVRDIYYMLDNM 620
           HEF  +D    + ++IY  +D +
Sbjct: 592 HEFLAKDTRHKRRKEIYETVDGL 614


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 213/620 (34%), Positives = 345/620 (55%), Gaps = 14/620 (2%)

Query: 7   YNQPCNSTQSTLL-LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLT 65
           ++Q  + T  TL  LL +C ++  +  +HA++I  G         KL+     S C    
Sbjct: 31  WHQLKSPTHQTLHHLLDQCSSMKRLKLVHAQIILHGLAAQVVTLGKLL-----SLCVQEG 85

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
           +  RY    +     + + F++N +I+ YS+  DP ++L++F  M+  G   ++F+   V
Sbjct: 86  DL-RYAHLLFDQI-PQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFV 143

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           LKAC+      E + +H    K+  G    +QN +++ YV C  +  ARQ+FD +  R  
Sbjct: 144 LKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTI 203

Query: 186 VSYNSMIDGYVKSGNIESARELFDSM-----PIRERNLISWNSVLNGYAQLKSGLQFAWQ 240
           VS+NSMI GY K G  + A  LF  M           L+S  S  + +  L  G      
Sbjct: 204 VSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLY 263

Query: 241 IFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIA 300
           I     E D I  N+++    KCG +  A+ +FD+M  +DVVSW +M++ YA  G V+ A
Sbjct: 264 IVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENA 323

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
            ++F+ MP ++VV+ N+++   V+ G   +A+E+F  M C   + PDDA+LV +LS  + 
Sbjct: 324 VQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRM-CISGVMPDDATLVSILSCCSN 382

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
            G +  G   H Y+  +  +++     +LIDMY+KCG+++ AI +F  + + +V  WN +
Sbjct: 383 TGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVI 442

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           I  LA+HG GE A ++   M+   + PD+ITFTGLL+AC+H+GLV  G   F++M    +
Sbjct: 443 IGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFR 502

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           + P ++HY CMVD+LGR G +  A  LI+ MP++P+ V+W  LL ACR Y NL + + + 
Sbjct: 503 ISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAKQIM 562

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
           K L+ +   NS  YVLLSNM++    W+D +++R +M +  +KK    S+IE++G  ++F
Sbjct: 563 KQLLELGRFNSGLYVLLSNMYSESQRWDDMKKIRKIMDDSGIKKCRAISFIEIDGCCYQF 622

Query: 601 FVRDKSRLQVRDIYYMLDNM 620
            V DK       IY +LD +
Sbjct: 623 MVDDKRHCASTGIYSILDQL 642


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 217/606 (35%), Positives = 340/606 (56%), Gaps = 11/606 (1%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LL  CKTL  V QIHA+++ +    +  L  KLV    + P +P      Y    +    
Sbjct: 18  LLASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLP-SPSPSALDYALSLFSHIP 76

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
                F  N +++ +S G  P+  L ++  +  NG  +D+FS   +LKA S+L  +  GL
Sbjct: 77  NPPTRF-SNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGL 135

Query: 140 QIHGLLRKVAF-GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
           +IHGL  K  F  +D F+Q+ LI++Y  CG +  AR LFDKM  RD V++N MIDGY ++
Sbjct: 136 EIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQN 195

Query: 199 GNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLIS---- 252
            + +   +L++ M     E + I   +VL+  A     L +   I + + +         
Sbjct: 196 AHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAH-AGNLSYGKAIHQFIKDNGFRVGSHI 254

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
             S+++    CG M  A+ ++D++P + +V    M+ GYAKLG V  AR +FD M ++D+
Sbjct: 255 QTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDL 314

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           V  +AM+ GY  +   ++AL++F+ MQ    + PD  +++ V+SA A +G + +   IH 
Sbjct: 315 VCWSAMISGYAESYQPLEALQLFNEMQ-RRRIVPDQITMLSVISACANVGALVQAKWIHT 373

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
           Y +K+ F        ALIDMY+KCG++  A +VFE +   +V  W++MIN  A+HG  + 
Sbjct: 374 YADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADS 433

Query: 433 AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV 492
           A  L   M+  +IEP+ +TF G+L AC+HAGLV+EG   F  M   H++ P+ +HYGCMV
Sbjct: 434 AIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMV 493

Query: 493 DILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552
           D+  RA H+  A  LIE MP  PN +IW +L+SAC+N+  + +GE  A  L+ ++  +  
Sbjct: 494 DLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDG 553

Query: 553 SYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRD 612
           + V+LSN++A    W+D   VR +MK + + K   CS IE+   VH F + D+   Q  +
Sbjct: 554 ALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQSDE 613

Query: 613 IYYMLD 618
           IY  LD
Sbjct: 614 IYKKLD 619


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 196/535 (36%), Positives = 304/535 (56%), Gaps = 34/535 (6%)

Query: 86  LWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
           +WNA+ + YS     K+ +V+F  M    V  + F+  ++LK+C ++  ++EG ++H  +
Sbjct: 18  IWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVKINALKEGEEVHCFV 77

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
            K  F ++ F+                                 ++ID Y   G I +A 
Sbjct: 78  IKSGFRANPFVAT-------------------------------TLIDMYASGGAIHAAY 106

Query: 206 ELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGK 265
            +F  M   ERN+I+W +++NGY      L  A ++F+  PERD++ WN+M+ G ++   
Sbjct: 107 RVFGEMI--ERNVIAWTAMINGYITC-CDLVTARRLFDLAPERDIVLWNTMISGYIEAKD 163

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
           +  A+ LFDKMP +DV+SW  +++GYA  G V    RLF+EMP+R+V + NA++GGY RN
Sbjct: 164 VIRARELFDKMPNKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRN 223

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
           G   + L  F  M  +  + P+DA+LV VLSA A+LG +D G  +H Y E   +  N   
Sbjct: 224 GCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYV 283

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
             AL+DMY+KCG +E A+ VF+ +++  +  WN +I GLA+HG G  A +L   M+    
Sbjct: 284 RNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGE 343

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR 505
            PD ITF G+L AC H GLV++G   F+ M   + + P ++HYGC+VD+LGRAG +  A 
Sbjct: 344 NPDGITFIGILCACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAV 403

Query: 506 NLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565
           + I  MP+E + VIW  LL ACR Y+N+ + E   + LI  +  N ++YV+LSN++   G
Sbjct: 404 DFIRKMPIEADAVIWAALLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFG 463

Query: 566 MWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            W D  R++  M++   KKLPGCS IE+   + EF+  D+   +   IY  L  +
Sbjct: 464 RWKDVARLKVAMRDTGFKKLPGCSLIEVNDYLVEFYSLDERHPEKEQIYGTLRTL 518



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 112/237 (47%), Gaps = 12/237 (5%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV--LKACSRLGLIEEG 138
           +++ F WNA+I  Y+      E L  F  ML +G  V    A+LV  L AC+RLG ++ G
Sbjct: 207 ERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPN-DATLVNVLSACARLGALDLG 265

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
             +H       +  +++++N L+ +Y +CG +E A  +F  M  +D +S+N++I G    
Sbjct: 266 KWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVH 325

Query: 199 GNIESARELFDSMPIRERNL--ISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
           G+   A  LF  M I   N   I++  +L     +   ++  +  F+ M +   I     
Sbjct: 326 GHGADALNLFSHMKIAGENPDGITFIGILCACTHMGL-VEDGFSYFKSMTDDYSIVPRIE 384

Query: 257 LHGCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
            +GC+     + G +  A     KMP + D V WA ++        V++A    +++
Sbjct: 385 HYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALLGACRVYKNVELAELALEKL 441



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 91/441 (20%), Positives = 189/441 (42%), Gaps = 69/441 (15%)

Query: 19  LLLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           ++L+ C  +N + +   +H  +I +GF  N  + T L+  ++S            I   Y
Sbjct: 56  VILKSCVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGA---------IHAAY 106

Query: 76  HAFRE--KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLG 133
             F E  +++   W A+I  Y    D   A  +F L  +  + +     S  ++A     
Sbjct: 107 RVFGEMIERNVIAWTAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEA----- 161

Query: 134 LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMID 193
             ++ ++   L  K+    D+   N +++ Y   G +    +LF++M  R+  S+N++I 
Sbjct: 162 --KDVIRARELFDKMP-NKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIG 218

Query: 194 GYVKSGNIESARELFDSMPIRER---NLISWNSVLNGYAQLKSGLQFAW-QIFEKMP--E 247
           GY ++G        F  M +      N  +  +VL+  A+L +     W  ++ +    +
Sbjct: 219 GYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYK 278

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
            ++   N+++    KCG ++ A  +F  M  +D++SW                       
Sbjct: 279 GNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISW----------------------- 315

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
                   N ++GG   +G+   AL +F +M+     +PD  + + +L A   +G ++ G
Sbjct: 316 --------NTIIGGLAVHGHGADALNLFSHMKIAGE-NPDGITFIGILCACTHMGLVEDG 366

Query: 368 VAIHRYLEKDQFSLNGK--HGVALIDMYSKCGSIENAIKVFEQ--IEDGSVDHWNAMING 423
            +  + +  D +S+  +  H   ++D+  + G + +A+    +  IE  +V  W A++  
Sbjct: 367 FSYFKSM-TDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAV-IWAALLGA 424

Query: 424 LAIHG---LGELAFDLLMEME 441
             ++    L ELA + L+E E
Sbjct: 425 CRVYKNVELAELALEKLIEFE 445



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 46/319 (14%)

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           A ++FD++P+ +    NAM  GY +N      + +F  M+  L + P+  +  ++L +  
Sbjct: 4   AHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMK-GLDVMPNCFTFPVILKSCV 62

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
           ++  + +G  +H ++ K  F  N      LIDMY+  G+I  A +VF ++ + +V  W A
Sbjct: 63  KINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTA 122

Query: 420 MING--------------------------LAIHGLGELAFDLLMEMERLSIEP--DDIT 451
           MING                            I G  E A D++   E     P  D ++
Sbjct: 123 MINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIE-AKDVIRARELFDKMPNKDVMS 181

Query: 452 FTGLLNACAHAGLVKEGLLCFELM--RRIHKLEPELQHY---GCMVDILGRAGHIEAARN 506
           +  +LN  A  G V      FE M  R +      +  Y   GC  ++L       A + 
Sbjct: 182 WNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVL------SAFKR 235

Query: 507 LIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS-NSSSYV--LLSNMFAG 563
           ++ D  + PND     +LSAC     L++G+ V  H+         + YV   L +M+A 
Sbjct: 236 MLVDGTVVPNDATLVNVLSACARLGALDLGKWV--HVYAESHGYKGNVYVRNALMDMYAK 293

Query: 564 LGMWNDARRVRSMMKERNL 582
            G+   A  V   M  ++L
Sbjct: 294 CGVVETALDVFKSMDNKDL 312



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 6/130 (4%)

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
           +ENA KVF+QI + +   WNAM  G + +   +    L  +M+ L + P+  TF  +L +
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 459 CAHAGLVKEG--LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPN 516
           C     +KEG  + CF +++   +  P +     ++D+    G I AA  +  +M +E N
Sbjct: 61  CVKINALKEGEEVHCF-VIKSGFRANPFVAT--TLIDMYASGGAIHAAYRVFGEM-IERN 116

Query: 517 DVIWRTLLSA 526
            + W  +++ 
Sbjct: 117 VIAWTAMING 126


>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 209/583 (35%), Positives = 323/583 (55%), Gaps = 13/583 (2%)

Query: 47  HLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR--EKKDPFLWNAIIKTYSHGLDPKEAL 104
           HL   L     + P   L   A       H F    +  P L   +I   S     +E L
Sbjct: 11  HLPQHLAGLLKTRPLHDLLSDASTSRAARHLFDAVPRPTPALCGTLISALSRLCSHQELL 70

Query: 105 VMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLY 164
             F  +   G  V      LV+K+C+ L    +G Q+H          D+F+Q  L+  Y
Sbjct: 71  DAFSSLHRRGSDVPPGCVPLVVKSCAILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFY 130

Query: 165 VRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSV 224
            + G ++ A ++FD+M ++D +  N +I GY KSG++  AR LFD M +R R   SWNS+
Sbjct: 131 AKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGM-VR-RTSASWNSM 188

Query: 225 LNGYAQLKSGLQFAWQIFEKM----PERDLISWNSMLHGCVKCGKMDD---AQALFDKMP 277
           +  YA      Q A ++F +M       + I+  +M   C K G ++    A++L  +  
Sbjct: 189 IACYAH-GGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWARSLIAEQD 247

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
            ++++    +++ Y K   +D ARR FD M +RDVVA + M+ GY +NG   ++LE+F+ 
Sbjct: 248 LQNMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFER 307

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
           M+      P++ +LV VLSA AQLG  + G  I  ++E     L    G ALIDMY+KCG
Sbjct: 308 MKAT-SCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCG 366

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            +  A  VF ++E   V  WN+M+ GLA++G  + A  L  EM    ++P++ITF  LL 
Sbjct: 367 HVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLT 426

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
           AC HAGLV +G+  F+ M+ IH + P+++H  C+VD+L ++G +  A   I DM +EPN 
Sbjct: 427 ACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNA 486

Query: 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
           VIW TLLSACR + ++ + +  A  L+ ++  NSS YVLLSN++A  G+W D R +R +M
Sbjct: 487 VIWSTLLSACRAHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLM 546

Query: 578 KERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           + +N++KL   SWIEL+G VH+F V+D    +  +I+ ++D M
Sbjct: 547 RSKNVQKLSAYSWIELDGEVHKFLVQDTYHPKSAEIFNVVDGM 589


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 196/507 (38%), Positives = 297/507 (58%), Gaps = 8/507 (1%)

Query: 121 SASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYV--RCGYLEFARQLFD 178
           +A+  L    R   +EE  QIHG + K     D    + L++       G L +AR +FD
Sbjct: 17  NAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFD 76

Query: 179 KMGIRDSVSYNSMIDGYVKSGNIESA-----RELFDSMPIRERNLISWNSVLNGYAQLKS 233
           ++   ++  +N+MI GY  S   E A       L+ S+P             +  + L+ 
Sbjct: 77  RIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEE 136

Query: 234 GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAK 293
             Q    I +     ++ + NS+L+   K G +  A+ LFD++ +RD VSW +MIDGY K
Sbjct: 137 TQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTK 196

Query: 294 LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI 353
            G +++A  +F+ MP+R++++  +M+ G V  G   +AL +F  MQ    +  D+ +LV 
Sbjct: 197 CGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTA-GIKLDNVALVS 255

Query: 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
            L A A LG +D+G  IH Y++K +  ++   G  LIDMY+KCG +E AI+VF ++E+  
Sbjct: 256 TLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKG 315

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE 473
           V  W AMI+G AIHG G  A +  M+M+   +EP+ +TFTG+L AC+HAGLV E  L FE
Sbjct: 316 VSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFE 375

Query: 474 LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENL 533
            M RIH  +P ++HYGCMVD+LGRAG ++ A  LIE+MP++PN  IW  LL+AC  + NL
Sbjct: 376 SMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNL 435

Query: 534 NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
            +G+ + K LI +D  +   Y+ L+++ A  G WN A RVR  MKE+ + KLPGCS I +
Sbjct: 436 ELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISV 495

Query: 594 EGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            G  HEF   D+S  Q+++I +ML+ +
Sbjct: 496 NGTAHEFLAGDESHPQIKEIDHMLEQI 522



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 138/439 (31%), Positives = 243/439 (55%), Gaps = 18/439 (4%)

Query: 4   SANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTP 63
           ++  +   N+ Q TL LL++C  + ++ QIH +M+ TG I +    +KL+A F +SP + 
Sbjct: 9   TSQLSSESNAAQ-TLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLA-FCASPNSG 66

Query: 64  LTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSAS 123
              +AR +F +   FR   + F+WN +I+ YS+  +P+EAL+++  ML + V  + ++  
Sbjct: 67  SLAYARTVFDRI--FR--PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFP 122

Query: 124 LVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183
            +LKACS +  +EE  QIH  + K+ FGS+++  N L+++Y + G ++ AR LFD++  R
Sbjct: 123 FLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQR 182

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLN---GYAQLKSGLQFAWQ 240
           D+VS+NSMIDGY K G IE A E+F+ MP  ERN+ISW S+++   G  + K  L    +
Sbjct: 183 DTVSWNSMIDGYTKCGEIEMAYEIFNHMP--ERNIISWTSMISGCVGAGKPKEALNLFHR 240

Query: 241 IFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV----VSWANMIDGYAKLGR 296
           +     + D ++  S L  C   G +D  + +   + K ++    +    +ID YAK G 
Sbjct: 241 MQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGD 300

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           ++ A  +F +M ++ V    AM+ GY  +G   +ALE F  MQ    + P+  +   +L+
Sbjct: 301 LEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTA-GVEPNQMTFTGILT 359

Query: 357 AIAQLGHIDKGVAIHRYLEKDQ-FSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSV 414
           A +  G + +   +   +E+   F  + +H   ++D+  + G ++ A ++ E +    + 
Sbjct: 360 ACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNA 419

Query: 415 DHWNAMINGLAIHGLGELA 433
             W A++N   IHG  EL 
Sbjct: 420 AIWGALLNACHIHGNLELG 438


>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
          Length = 546

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 206/583 (35%), Positives = 323/583 (55%), Gaps = 62/583 (10%)

Query: 12  NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
           ++T S   LL+ C T + + Q+HAR+I  G  ++  L ++ +     + C  L+ F+   
Sbjct: 23  DTTSSISTLLKACTTTSTLEQVHARIIRKGLHQDHFLISQFL-----TLCNSLSNFS--- 74

Query: 72  FFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKAC 129
            +    F     P   LWN  IK YS        + +F  M  +    DKF+   ++KAC
Sbjct: 75  -YTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKAC 133

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
           S++  ++EG+  HG   +   G D+F+   LI LY +C                      
Sbjct: 134 SKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKC---------------------- 171

Query: 190 SMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERD 249
                    G I  AR++FD M   ERN++SW +++ GYA   S L  A ++F++MPE++
Sbjct: 172 ---------GEILCARKVFDEMG--ERNVVSWTAMIAGYASF-SDLVEARKLFDEMPEKN 219

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
            +SWN+++ G VKCG +  A+ +FD+MP R+VVS+  MIDGYAK G +  AR +F+E P+
Sbjct: 220 AVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPE 279

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           RDVVA +A+               IF  +  E  + PD+  +V ++SA +Q+G ++    
Sbjct: 280 RDVVAWSAL---------------IF-RVCAEWNVKPDEFIMVSLMSACSQMGSLELAKW 323

Query: 370 IHRYLEKDQFSLNGKHGVA-LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
           +  Y+ K    ++  H +A LIDM +KCGS++ A K+FE++    +  + +M+ GL+IHG
Sbjct: 324 VDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHG 383

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
            G  A  L   M    + PDD+ FT +L AC+ AGLV EG   FE M+  + + P   HY
Sbjct: 384 CGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHY 443

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
            CMVD+LGRAG ++ A  L++ MP+EP+   W  LL AC+ + ++ +GE VA  L  ++ 
Sbjct: 444 ACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEP 503

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
            N+ +YVLLSN++A    W D   +R+ M+ER ++K+PGCSWI
Sbjct: 504 QNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 546


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 200/544 (36%), Positives = 315/544 (57%), Gaps = 39/544 (7%)

Query: 110 MLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY 169
           + D     D  + + V+    + G+IEE  +   L  +V    ++     ++  Y+R   
Sbjct: 74  LFDEMREPDVITWTTVISGYIKCGMIEEARR---LFDRVDAKKNVVTWTAMVGGYIRSNK 130

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA 229
           +  A +LF++M  ++ VS+N+MIDGY ++G I+SA  LF+ MP  ERN++SWN+V++  A
Sbjct: 131 ISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMP--ERNVVSWNTVMSMLA 188

Query: 230 QLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMID 289
           Q    ++ A ++F++MPERD+ISW +M+ G  K G++D+A+ LFD+MP+R+VVSW  MI 
Sbjct: 189 QCGR-IEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMIT 247

Query: 290 GYAKLGRVD-------------------------------IARRLFDEMPKRDVVACNAM 318
           GYA+  R+D                                AR+LF+EMPK++V++   M
Sbjct: 248 GYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTM 307

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
           + G V+ G S +AL+IF  M       P+  + V VL A + L  + +G  +H+ + K  
Sbjct: 308 ITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTV 367

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD--HWNAMINGLAIHGLGELAFDL 436
           +  +     ALI+MYSKCG +  A K+F+       D   WN +I   A HG G+ A + 
Sbjct: 368 YQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINF 427

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
             EM +   +PDD+T+ GLL+AC+HAGLV+EGL  F+ + +   +     HY C+VD+ G
Sbjct: 428 FKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCG 487

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556
           RAG ++ A   IE +  +P+  +W  LL+ C  + N+ +G+  AK L+ ++  N+ +Y+L
Sbjct: 488 RAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLL 547

Query: 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYM 616
           LSN++A  G W +A RVR  MK++ LKK PGCSWIE+   VH F V DKS  Q + IY +
Sbjct: 548 LSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEVGNRVHVFVVGDKSHSQSKLIYSL 607

Query: 617 LDNM 620
           L ++
Sbjct: 608 LRDL 611



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 203/372 (54%), Gaps = 16/372 (4%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN 217
           N +I+   + G +  AR+LFD+M   D +++ ++I GY+K G IE AR LFD +  + +N
Sbjct: 56  NWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAK-KN 114

Query: 218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP 277
           +++W +++ GY +  + +  A ++F +MP ++++SWN+M+ G  + G++D A  LF+KMP
Sbjct: 115 VVTWTAMVGGYIR-SNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMP 173

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
           +R+VVSW  ++   A+ GR++ ARRLFD MP+RDV++  AM+ G  +NG   +A  +FD 
Sbjct: 174 ERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDR 233

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI-HRYLEKDQFSLNGKHGVALIDMYSKC 396
           M        +  S   +++  AQ   +D+ + +  R  E+D  S N      +I    + 
Sbjct: 234 MP-----ERNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWN-----TMITGLIQN 283

Query: 397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS-IEPDDITFTGL 455
           G +  A K+F ++   +V  W  MI G    G  E A  +   M   +  +P+  TF  +
Sbjct: 284 GDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSV 343

Query: 456 LNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIED-MPME 514
           L AC++   + EG    +++ +    +        ++++  + G +  AR + +D M  +
Sbjct: 344 LGACSNLAGLGEGQQVHQIISKTVYQDSTFV-VSALINMYSKCGELGTARKMFDDGMTSQ 402

Query: 515 PNDVIWRTLLSA 526
            + V W  +++A
Sbjct: 403 RDLVSWNGIIAA 414



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 214/437 (48%), Gaps = 69/437 (15%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           K+   WN +I  Y+       A+ +F  M +  V     S + V+   ++ G IEE  ++
Sbjct: 144 KNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNV----VSWNTVMSMLAQCGRIEEARRL 199

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
              + +     D+     +I+   + G ++ AR LFD+M  R+ VS+N+MI GY ++  +
Sbjct: 200 FDRMPE----RDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRL 255

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
           + A +LF+ MP  ER+L SWN+++ G  Q    L+ A ++F +MP++++ISW +M+ GCV
Sbjct: 256 DEALDLFERMP--ERDLPSWNTMITGLIQ-NGDLRRARKLFNEMPKKNVISWTTMITGCV 312

Query: 262 KCGKMDDAQALFDKM-------PKRD---------------------------------- 280
           + G+ ++A  +F +M       P +                                   
Sbjct: 313 QEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDST 372

Query: 281 -VVSWANMIDGYAKLGRVDIARRLFDE--MPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
            VVS   +I+ Y+K G +  AR++FD+    +RD+V+ N ++  Y  +GY  +A+  F  
Sbjct: 373 FVVS--ALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKE 430

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL-NGKHGVALIDMYSKC 396
           M+   +  PDD + V +LSA +  G +++G+     L KD+  L    H   L+D+  + 
Sbjct: 431 MRKSGF-KPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRA 489

Query: 397 GSIENAIKVFEQIEDG-SVDHWNAMINGLAIHG---LGELAFDLLMEMERLSIEPDDI-T 451
           G ++ A    E++E   S   W A++ G  +H    +G+ A   L+E     +EP++  T
Sbjct: 490 GRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLE-----VEPENAGT 544

Query: 452 FTGLLNACAHAGLVKEG 468
           +  L N  A  G  +E 
Sbjct: 545 YLLLSNIYASTGKWREA 561



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 134/300 (44%), Gaps = 33/300 (11%)

Query: 307 MPKRD------VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
           +P++D      V  CN M+    ++G  M+A  +FD M+      PD  +   V+S   +
Sbjct: 41  IPRKDFTVDGNVARCNWMITNLSKDGRIMEARRLFDEMR-----EPDVITWTTVISGYIK 95

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
            G I++     R  ++     N     A++  Y +   I +A K+F ++ + +V  WN M
Sbjct: 96  CGMIEEA---RRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTM 152

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           I+G A +G  + A  L  +M     E + +++  +++  A  G ++E    F+ M     
Sbjct: 153 IDGYAQNGRIDSAMYLFEKMP----ERNVVSWNTVMSMLAQCGRIEEARRLFDRMP---- 204

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
            E ++  +  M+  L + G I+ AR L + MP E N V W  +++     +NL + E + 
Sbjct: 205 -ERDVISWTAMIAGLSKNGRIDEARLLFDRMP-ERNVVSWNAMITGY--AQNLRLDEAL- 259

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL-EGVVHE 599
                M   +  S+   + M  GL    D RR R +  E   K +   SW  +  G V E
Sbjct: 260 DLFERMPERDLPSW---NTMITGLIQNGDLRRARKLFNEMPKKNV--ISWTTMITGCVQE 314



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 122/294 (41%), Gaps = 56/294 (19%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLD-NGVSVDKFSASLVLKACSRLGLIEEGL 139
           KK+   W  +I       + +EAL +F  ML  NG   ++ +   VL ACS L  + EG 
Sbjct: 298 KKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQ 357

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK--MGIRDSVSYNSMIDGYVK 197
           Q+H ++ K  +    F+ + LI++Y +CG L  AR++FD      RD VS+N +I  Y  
Sbjct: 358 QVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAH 417

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
            G  + A   F  M                    KSG +            D +++  +L
Sbjct: 418 HGYGKEAINFFKEMR-------------------KSGFK-----------PDDVTYVGLL 447

Query: 258 HGCVKCGKMDDAQALFDKMPK-RDVV----SWANMIDGYAKLGRVDIARRLFDEMPKRD- 311
             C   G +++    FD++ K R ++     +A ++D   + GR+  A    + +  +  
Sbjct: 448 SACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPS 507

Query: 312 -------VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
                  +  CN      +    + K LE+           P++A   ++LS I
Sbjct: 508 ARVWGALLAGCNVHANVKIGKQAAKKLLEV----------EPENAGTYLLLSNI 551



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 16/219 (7%)

Query: 3   VSANYNQPCNST-QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPC 61
           +S N  +P   T  S L        L +  Q+H  +  T +  +T + + L+  +S   C
Sbjct: 328 LSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSK--C 385

Query: 62  TPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFS 121
             L   AR +F        ++D   WN II  Y+H    KEA+  F  M  +G   D  +
Sbjct: 386 GELGT-ARKMF--DDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVT 442

Query: 122 ASLVLKACSRLGLIEEGLQIHGLL---RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD 178
              +L ACS  GL+EEGL+    L   R +    D +   CL+ L  R G L+ A    +
Sbjct: 443 YVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYA--CLVDLCGRAGRLKEAFGFIE 500

Query: 179 KMGIRDSVS-YNSMIDGYVKSGNI----ESARELFDSMP 212
           ++  + S   + +++ G     N+    ++A++L +  P
Sbjct: 501 RLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEP 539


>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
          Length = 608

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 209/583 (35%), Positives = 323/583 (55%), Gaps = 13/583 (2%)

Query: 47  HLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR--EKKDPFLWNAIIKTYSHGLDPKEAL 104
           HL   L     + P   L   A       H F    +  P L   +I   S     +E L
Sbjct: 11  HLPQHLAGLLKTRPLHDLLSDASTSRAARHLFDAVPRPTPALCGTLISALSRLCSHQELL 70

Query: 105 VMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLY 164
             F  +   G  V      LV+K+C+ L    +G Q+H          D+F+Q  L+  Y
Sbjct: 71  DAFSSLHRRGSDVPPGCVPLVVKSCAILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFY 130

Query: 165 VRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSV 224
            + G ++ A ++FD+M ++D +  N +I GY KSG++  AR LFD M +R R   SWNS+
Sbjct: 131 AKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGM-VR-RTSASWNSM 188

Query: 225 LNGYAQLKSGLQFAWQIFEKM----PERDLISWNSMLHGCVKCGKMDD---AQALFDKMP 277
           +  YA      Q A ++F +M       + I+  +M   C K G ++    A++L  +  
Sbjct: 189 IACYAH-GGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWARSLIAEQD 247

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
            ++++    +++ Y K   +D ARR FD M +RDVVA + M+ GY +NG   ++LE+F+ 
Sbjct: 248 LQNMIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFER 307

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
           M+      P++ +LV VLSA AQLG  + G  I  ++E     L    G ALIDMY+KCG
Sbjct: 308 MKAT-SCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCG 366

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            +  A  VF ++E   V  WN+M+ GLA++G  + A  L  EM    ++P++ITF  LL 
Sbjct: 367 HVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLT 426

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
           AC HAGLV +G+  F+ M+ IH + P+++H  C+VD+L ++G +  A   I DM +EPN 
Sbjct: 427 ACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNA 486

Query: 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
           VIW TLLSACR + ++ + +  A  L+ ++  NSS YVLLSN++A  G+W D R +R +M
Sbjct: 487 VIWSTLLSACRAHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLM 546

Query: 578 KERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           + +N++KL   SWIEL+G VH+F V+D    +  +I+ ++D M
Sbjct: 547 RSKNVQKLSAYSWIELDGEVHKFLVQDTYHPKSAEIFNVVDGM 589


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 217/607 (35%), Positives = 331/607 (54%), Gaps = 47/607 (7%)

Query: 17  TLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L LL+        NQI +  I +G  ++  +++KL+  + S        F+R +FF+ H
Sbjct: 31  SLSLLQNLSHPRSFNQILSHAIASGVFRDPVVSSKLL--YYSLSHDHDFAFSRTLFFQIH 88

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
               K + F WN + + YS    P E + ++ LML NG   D +S   VLKAC+RL L+ 
Sbjct: 89  ----KPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLH 144

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG--IRDSVSYNSMIDG 194
           +G +IH    K+    D+F+QN LIS +  CG +E AR +FD +   +RD VS+NSMI G
Sbjct: 145 KGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISG 204

Query: 195 YVKSGNIESARELF------DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER 248
           Y++S   E A ++F       S+   E  L+S  SV      L  G +            
Sbjct: 205 YLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVL 264

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           D+   +S++    KCG+++DA+ +FD++P R+ V W +MI GYA+      A  LF EM 
Sbjct: 265 DVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREM- 323

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
                     +GG+                        D A++  VLSA    G + +G 
Sbjct: 324 ---------QIGGFA----------------------ADAATIACVLSACGHWGALAQGR 352

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            IH Y E++   ++     ALI MYSKCG I+ A+++F  +    +  W+A+I+GLA++G
Sbjct: 353 WIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNG 412

Query: 429 LGELAFDLLMEMERLS-IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
             + A  L  +ME +S I P++ITF G+L AC H G V +GL  F  M +I+ L P ++H
Sbjct: 413 ESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEH 472

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
           YGCMVD+LGRA  +  A   I  +P++P+ VIWR+LL ACRN+ N+ + E  AK +  ++
Sbjct: 473 YGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELE 532

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
                + VLLSN++A    W D +RVR  M  + +KK PGCS++E++G+VHE FV D+S 
Sbjct: 533 PRRCGARVLLSNVYASASRWGDVKRVRKDMATQRIKKQPGCSFVEIDGLVHELFVADRSH 592

Query: 608 LQVRDIY 614
            ++  IY
Sbjct: 593 PEMGAIY 599


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 207/600 (34%), Positives = 337/600 (56%), Gaps = 78/600 (13%)

Query: 64  LTEFARYIFFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFS 121
           LT +   + +    F+  ++P    WN +I+ ++   DP  AL ++  M+  G+S + ++
Sbjct: 21  LTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYT 80

Query: 122 ASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
              + K+C++    +EG QIH  + K     DL +   LIS+Y +               
Sbjct: 81  FPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQ--------------- 125

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQI 241
                           +G +E A ++FD+     R+++S+ +++ GYA  +  +  A ++
Sbjct: 126 ----------------NGIVEDAHKVFDTSS--HRDVVSYTAMITGYAS-RGNMDKAQKM 166

Query: 242 FEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV------------------- 282
           F+++P +D++SWN+M+ G  + G+  +A  LF++M K DV                    
Sbjct: 167 FDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNV 226

Query: 283 -------SWAN-------------MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGY 322
                  SW +             +ID Y+K G ++ A  LF+ +  +DV++ N ++GGY
Sbjct: 227 ELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGY 286

Query: 323 VRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL- 381
               +  +AL +F  M  +L   P+D +++ +L A A LG ID G  IH Y++K    + 
Sbjct: 287 AYINHHKEALLVFQEM-LKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGII 345

Query: 382 -NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
            N     +LIDMY+KCG+IE A +VF+ I + S+   NAMI G A+HG  + AFDLL  M
Sbjct: 346 TNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRM 405

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500
           ++  IEPDDITF GLL+AC+HAGL   G   F+ M   +++EP+L+HYGCM+D+LGR+G 
Sbjct: 406 KKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGL 465

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560
            + A  LI  M MEP+ VIW +LL AC+ ++NL +GE +A+ L+ ++  N  SYVLLSN+
Sbjct: 466 FKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNI 525

Query: 561 FAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +A    W+D  RVR+++ ++ LKK+PGCS IE++ +VHEF + DK   Q ++IY ML+ +
Sbjct: 526 YATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFHPQNKEIYKMLEEI 585


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 208/580 (35%), Positives = 333/580 (57%), Gaps = 24/580 (4%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH-AFREKKDPFL--WN 88
           ++HA +I T    +  L + ++ S+S S              K H  F + + P L  WN
Sbjct: 35  ELHAHLIRTQLHTDPFLMSDVIRSYSLSSTN---------LHKAHLVFNQIECPTLVVWN 85

Query: 89  AIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKV 148
            +I+  S    P EA+ M+  M   G++ +  +   + KAC+R+  I  G +IH    K+
Sbjct: 86  HMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKL 145

Query: 149 AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELF 208
            F S LF+ N LI +Y  CG L FA+++FD M  RD VS+N++I GY +    +    LF
Sbjct: 146 GFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLF 205

Query: 209 DSM--------PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
           D+M         +    +I   S L  +    S +++   I E   E D+   N+++   
Sbjct: 206 DAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKY---IKENNLEIDVYLGNTLIDMY 262

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
            +    + AQ +FD+M +R++VSW  ++ G+AK+G +  AR+LFD MPKRDV++  +M+ 
Sbjct: 263 GRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMIT 322

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           GY +      A+++F  M     + PD  ++  VLSA A LG +D G A+H Y+ +    
Sbjct: 323 GYSQASQFSDAVKLFQEMMAA-KVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQ 381

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
            +   G +LIDMY KCG +E A++VF +++D     W ++I+GLA++G    A DL  +M
Sbjct: 382 ADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQM 441

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500
            R  ++P   TF G+L ACAHAGLV +GL  FE M  +H L P ++HYGC+VD+L R+G+
Sbjct: 442 LREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGN 501

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560
           I+ A   I+ MP+ P+ V+WR LLSAC+ + N+ + E   K L+ +D  +S +YVLLSN 
Sbjct: 502 IDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNT 561

Query: 561 FAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
           +AG+  W+DA ++R +M++ +++K  G S IE++G+V  +
Sbjct: 562 YAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEVDGMVSNY 601


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 215/669 (32%), Positives = 358/669 (53%), Gaps = 94/669 (14%)

Query: 23  KCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKK 82
           +    + + Q+HA++I      + +    L+     + CT L     Y    +++     
Sbjct: 10  RVGNFSHLRQLHAQIIHNSLHHHNYWVALLI-----NHCTRLRAPPHYTHLLFNSTL-NP 63

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           + F++ ++++ YSH  D  + ++MF  M   GV  D F   +++K+         G+  H
Sbjct: 64  NVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAG-----NGGIGFH 118

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK----------------------- 179
             + K+  GSD F++N +I +Y R G +  AR++FD+                       
Sbjct: 119 AHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWES 178

Query: 180 ----------MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA 229
                     M  R+ +++ +M+ GY K  ++E+AR  FD MP  ER+++SWN++L+GYA
Sbjct: 179 EGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMP--ERSVVSWNAMLSGYA 236

Query: 230 QLKSGL-QFAWQIFEKMP----ERDLISWNSMLHGC------------------------ 260
           Q  +GL +   ++F++M     E D  +W +++  C                        
Sbjct: 237 Q--NGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLN 294

Query: 261 -----------VKCGKMDDAQALFDKM-PKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
                       KCG +  A+ +FD++   R+ V+W  MI  Y ++G +D AR LF+ MP
Sbjct: 295 CFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMP 354

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            R+VV  N+M+ GY +NG S  A+E+F  M     L PD+ ++V V+SA   LG ++ G 
Sbjct: 355 GRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGN 414

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            + R+L ++Q  L+     A+I MYS+CGS+E+A +VF+++    V  +N +I+G A HG
Sbjct: 415 WVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHG 474

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
            G  A +L+  M+   IEPD +TF G+L AC+HAGL++EG   FE ++     +P + HY
Sbjct: 475 HGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDHY 529

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
            CMVD+LGR G +E A+  +E MPMEP+  ++ +LL+A R ++ + +GE  A  L  ++ 
Sbjct: 530 ACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEP 589

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
            NS +++LLSN++A  G W D  R+R  MK+  +KK  G SW+E  G +H+F V D+S  
Sbjct: 590 DNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHE 649

Query: 609 QVRDIYYML 617
           +  DIY +L
Sbjct: 650 RSDDIYQLL 658


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 212/618 (34%), Positives = 337/618 (54%), Gaps = 77/618 (12%)

Query: 4   SANYNQPCNS-TQSTLLLLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSS 59
           SA  N P +   Q T+L L   K++  +    Q+HA ++ +G  ++ +++  L+  +++ 
Sbjct: 19  SAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYAN- 77

Query: 60  PCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDK 119
           P     +FA  +F          + F+WN +IK         +A+  +  M+ +    +K
Sbjct: 78  PHFSNFDFALKVFSSI----PNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDA-RPNK 132

Query: 120 FSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK 179
           F+   + KACS    ++EG QIHG + K   GSD+ +++  I +Y   G           
Sbjct: 133 FTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFG----------- 181

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAW 239
                                +E AR++F S                             
Sbjct: 182 --------------------RLEDARKMFYS----------------------------- 192

Query: 240 QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDI 299
                  E D++ WN+M+ G +KCG ++ A+ LF +MP +++ SW  MI+G AK G +  
Sbjct: 193 ------GESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGD 246

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           AR+LFDEM +RD ++ ++M+ GY+  G   +ALEIF  MQ E    P    L  VL+A +
Sbjct: 247 ARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQRE-ETRPGRFILSSVLAACS 305

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
            +G ID+G  +H YL+++   L+   G AL+DMY+KCG ++   +VFE++++  +  WNA
Sbjct: 306 NIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNA 365

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           MI GLAIHG  E A +L  +++   ++P+ IT  G+L ACAHAG V +GL  F+ MR  +
Sbjct: 366 MIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFY 425

Query: 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPV 539
            ++PEL+HYGCMVD+LGR+G    A +LI  MPM+PN  +W  LL ACR + N ++ E V
Sbjct: 426 GVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERV 485

Query: 540 AKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHE 599
            K L+ ++  NS  YVLLSN++A +G ++D  ++R +MK R +K +PG S ++L G VHE
Sbjct: 486 GKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHE 545

Query: 600 FFVRDKSRLQVRDIYYML 617
           F + D S  Q+++IY  L
Sbjct: 546 FKMGDGSHPQMKEIYRKL 563


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 210/628 (33%), Positives = 340/628 (54%), Gaps = 80/628 (12%)

Query: 28  NDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLW 87
           + +  IHA+MI TG     +  +KL+     SP      +A  +F       ++ +  +W
Sbjct: 1   SSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETI----QEPNLLIW 56

Query: 88  NAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRK 147
           N + + ++   DP  AL ++  M+  G+  + ++   +LK+C++     EG QIHG + K
Sbjct: 57  NTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLK 116

Query: 148 VAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAREL 207
           + +  DL++   LIS+YV                               ++G +E AR++
Sbjct: 117 LGYDLDLYVHTSLISMYV-------------------------------QNGRLEDARKV 145

Query: 208 FDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMD 267
           FD      R+++S+ +++ GYA  K  +  A ++F+++P +D++SWN+M+ G  + G   
Sbjct: 146 FDQSS--HRDVVSYTALITGYAS-KGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNK 202

Query: 268 DAQALFDKMPK--------------------------RDVVSWAN-------------MI 288
           +A  LF +M K                          R V SW +             +I
Sbjct: 203 EALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALI 262

Query: 289 DGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD 348
           D Y K G V+ A  LF+ +  +DV++ N ++GGY       +AL +F  M       P+D
Sbjct: 263 DLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM-LRSGESPND 321

Query: 349 ASLVIVLSAIAQLGHIDKGVAIHRYLEK--DQFSLNGKHGVALIDMYSKCGSIENAIKVF 406
            +++ +L A A LG I+ G  IH Y+ K     +    H  +LIDMY+KCG IE A +VF
Sbjct: 322 VTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVF 381

Query: 407 EQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVK 466
           + I + S+  WNAMI G A+HG    AFD+   M +  IEPDDITF GLL+AC+H+G++ 
Sbjct: 382 DSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLD 441

Query: 467 EGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
            G   F  M+  +K+ P+L+HYGCM+D+LG +G  + A  +I  M MEP+ VIW +LL A
Sbjct: 442 LGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKA 501

Query: 527 CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLP 586
           C+ + N+ +GE  A++LI ++  N  SYVLLSN++A  G WN+  ++R+++ ++ +KK+P
Sbjct: 502 CKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVP 561

Query: 587 GCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           GCS IE++ VVHEF + DK   + R+IY
Sbjct: 562 GCSSIEIDSVVHEFIIGDKFHPRNREIY 589


>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
          Length = 567

 Score =  368 bits (944), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 190/515 (36%), Positives = 310/515 (60%), Gaps = 11/515 (2%)

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL-GLIE 136
           F      FL N +I+  +    P+ +   F  +L  G+  D+F+   +L +  +L     
Sbjct: 53  FPSSSATFLHNILIRASASSASPRLSFAAFSSLLRCGLVPDRFTLPPLLGSAGKLPAFPR 112

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK-MGIRDSVSYNSMIDGY 195
            G Q+H    +  F +D+F+ N L+++Y         R++F    G+ D VS+N++I GY
Sbjct: 113 TGAQVHAQAVRRGFLADVFVVNALLAMYGALRDAASMREVFGSCAGVADVVSWNTVIGGY 172

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE--RDLISW 253
           VK G +ESA+ +FD MP   RN +SW++++ GYA     L  A ++F++MP   R++++W
Sbjct: 173 VKCGEMESAKRVFDEMP--RRNGVSWSTMVGGYAAAGE-LDVAREMFDRMPAIGRNVVTW 229

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
           NSM+ G  + G +  A+ +FD+MP R++VSW  M+ GY+    +D AR LFD MP++DVV
Sbjct: 230 NSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVV 289

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
           +   M+ GY + G     LE+F  MQ E  + P++ ++V VLSA A L  +++G  +H +
Sbjct: 290 SWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAF 349

Query: 374 LEKDQFSLNGKH--GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
           ++K +  LN ++  G ALIDMY+KCG  + A+K+F  ++  +V  WNA+I  LA++G  +
Sbjct: 350 IDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQ 409

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            + D   +M+R   +P+DITF G+L AC+H GLV EG  CF+ M     ++PE++HYGCM
Sbjct: 410 DSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCM 469

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK--HLIGMDSS 549
           VD+LGRAG +E A  LI  MPM P+ +++  LL ACR ++  +V E V    H + +++ 
Sbjct: 470 VDMLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQ 529

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKK 584
            S  +VL+S+++A  G W D    R +++   ++K
Sbjct: 530 QSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRK 564



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 136/498 (27%), Positives = 225/498 (45%), Gaps = 75/498 (15%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFA--RYIFFKYHAFREKKDPFLWNA 89
           Q+HA+ +  GF+ +  +   L+A + +     L + A  R +F          D   WN 
Sbjct: 116 QVHAQAVRRGFLADVFVVNALLAMYGA-----LRDAASMREVFGSCAGV---ADVVSWNT 167

Query: 90  IIKTYSHGLDPKEALVMFCLM-LDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKV 148
           +I  Y    + + A  +F  M   NGVS           A   L +  E        R  
Sbjct: 168 VIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYA--AAGELDVAREMFD-----RMP 220

Query: 149 AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELF 208
           A G ++   N +++ + R G L  AR++FD+M +R+ VS+N+M+ GY  + +++ ARELF
Sbjct: 221 AIGRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELF 280

Query: 209 DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN-----SMLHGCVKC 263
           D MP  E++++SW  +++GYAQ     Q   ++F  M     +  N     S+L  C   
Sbjct: 281 DVMP--EKDVVSWTCMISGYAQ-AGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANL 337

Query: 264 GKMDDAQALFDKMPKRDVV------SWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNA 317
             +++ + +   + K  +V        A +ID YAK GR DIA ++F+ + +++V A NA
Sbjct: 338 TALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNA 397

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           ++     NG +  +++ F+ M+      P+D + V VL+A +  G +D+G    R  +  
Sbjct: 398 LITRLAMNGNAQDSVDAFEQMK-RTGEKPNDITFVGVLTACSHGGLVDEG---RRCFQS- 452

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLL 437
                         M S CG          Q E   V H+  M++ L   GL E A +L+
Sbjct: 453 --------------MASTCGV---------QPE---VKHYGCMVDMLGRAGLLEEAEELI 486

Query: 438 MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV---DI 494
             M    + PD + F  LL AC    + K   +   +   IH L    Q  GC V   DI
Sbjct: 487 RSMP---MAPDVMVFGALLGACR---MHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDI 540

Query: 495 LGRAGH---IEAARNLIE 509
              AG    +  AR +++
Sbjct: 541 YAAAGKWFDVLEARQVVQ 558


>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
          Length = 644

 Score =  368 bits (944), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 206/597 (34%), Positives = 341/597 (57%), Gaps = 21/597 (3%)

Query: 12  NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
           +S +    LLR+C +++ +NQ+HA ++  G      +T++++AS+ + P      +AR +
Sbjct: 10  SSARHVRELLRRCGSVHRLNQLHAHLVVHGV---DDVTSQILASYCALPAGGGVWYARQL 66

Query: 72  FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
           F +        D F++N++I+ Y +   P+EAL +   M+  G+  ++F+   +LKAC+R
Sbjct: 67  FDRI----PDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACAR 122

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
           +   E  +  HG++ K+ F   +F+ N L+  Y   G L  +R+ FD+M  R+ VS+NSM
Sbjct: 123 VQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSM 182

Query: 192 IDGYVKSGNIESARELFDSMPIR-----ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP 246
           I+GY ++GN   A  LF+ M  +     E  L+S     +    L+ G      +  +  
Sbjct: 183 INGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGC 242

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
             DLI  N+++    KCG +  A   FD MP ++ VSW +M+   AK   +D AR  F++
Sbjct: 243 RIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQ 302

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           +P++ +++ NAM+  YV+ G   +AL++++ M+  L L PD+ +L  VLSA  QLG +  
Sbjct: 303 IPEKSIISWNAMISCYVQGGRFHEALDLYNRMKL-LGLAPDEFTLAAVLSACGQLGDLAS 361

Query: 367 GVAIHRYLEKDQFSLNGKHGVAL----IDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
           G  IH  + +D F      GVAL    +DMY++CG ++ AI +F ++   +V  WNA+I 
Sbjct: 362 GKMIHDCI-RDNFH---NPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIG 417

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
            LA+HG  + A      M   +  PD+ITF  LL+AC H GL++ G   F+ MR ++ ++
Sbjct: 418 ALAMHGRAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVK 477

Query: 483 PELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKH 542
           P ++HY CMVD+LGR G +  A +LI+DMPM P+ V+W  LL ACR + ++ +G+ V K 
Sbjct: 478 PGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQ 537

Query: 543 LIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHE 599
           L+ ++  +   +VL+SNM      W D +R+R +M+E  +KK  G S IE    +HE
Sbjct: 538 LLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETNSNIHE 594


>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
          Length = 639

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 213/608 (35%), Positives = 351/608 (57%), Gaps = 20/608 (3%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LL+ C+++  + QIHA++   G   N    TK+V  F + P      +A  +      F 
Sbjct: 22  LLQSCESMAHLTQIHAKIFRVGLQDNMDTLTKIVL-FCTDPSRGSIRYAERVL----GFV 76

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           +     ++N +IK  +   + ++ LV+F  +   G++ D F+   V KA   LG + EG 
Sbjct: 77  QSPCLVMYNLMIKAVAKDENFRKVLVLFSELRKQGLNPDNFTLPPVFKAMGCLGKVVEGE 136

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           ++HG + K  F  D  + N ++ +Y   G +E A+++FD++  RD VS+N +I  YV   
Sbjct: 137 KVHGYVVKSGF--DACVCNSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYVGHR 194

Query: 200 NIESARELFDSMPIRERNL----ISWNSVLNGYAQLKS---GLQFAWQIFEKMPERDLIS 252
             E A  +F  M  RE NL     +  S L+  + L++   G +    +  ++     I 
Sbjct: 195 KFEDAIAVFRRMR-RESNLKADEATVVSTLSACSVLRNQEVGEEIHRYVDAELEMTTKIG 253

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
            N++L    KCG +D A+A+FD+M  ++V+ W +M+ GYA  G +D AR LF+  P RD+
Sbjct: 254 -NALLDMYCKCGCVDKARAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFERSPVRDI 312

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           V   AM+ GYV+     +AL++F  MQ +  L PD+  LV +L   AQ G +++G  +H 
Sbjct: 313 VLWTAMINGYVQFNLFDEALKLFRKMQIQ-RLRPDNFILVTLLKGCAQTGALEQGKWLHG 371

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
           Y+ ++  +L+   G AL+D+Y+KCG +E A++VF ++++     W ++I GLA++G+   
Sbjct: 372 YIHENSITLDRVVGTALVDVYAKCGCVEKALEVFYEMKERDTASWTSVIYGLAVNGMTSK 431

Query: 433 AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV 492
           A D   +ME     PDDITF G+L AC H GLV+EG   F+ M + +K++P+ +HY C++
Sbjct: 432 ALDFFSQMEEAGFRPDDITFIGVLTACNHGGLVEEGRRYFDSMTKTYKIQPKSEHYSCLI 491

Query: 493 DILGRAGHIEAARNLIEDMPMEPNDVI---WRTLLSACRNYENLNVGEPVAKHLIGMDSS 549
           D+L RAG ++ A  L+E +P+E +D++   + +LLSACRNY NL + E V + L  ++  
Sbjct: 492 DLLCRAGLLDEAELLLEMIPIESSDIVVPLYCSLLSACRNYGNLKMSERVGRRLERVEVK 551

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQ 609
           +SS + LL++++A    W D   VR  MKE  ++K PGCS IE+ GV+HEF V   S ++
Sbjct: 552 DSSVHTLLASVYASANRWEDVTTVRRKMKELGIRKFPGCSSIEVNGVLHEFMVGGPSHME 611

Query: 610 VRDIYYML 617
           + DI+ +L
Sbjct: 612 MDDIHSVL 619


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 200/540 (37%), Positives = 315/540 (58%), Gaps = 12/540 (2%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   WNA++  Y+     KEA  +F    D     +  S + +L A  + G IE+  +
Sbjct: 58  ERDVVSWNAMLSGYAQNGYVKEAKEIF----DEMPCKNSISWNGMLAAYVQNGRIEDARR 113

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
               L +     +L   NC++  YV+   L  AR +FD+M  RD VS+N+MI GY ++G 
Sbjct: 114 ----LFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGE 169

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
           +  A+ LF+  P+R+  + +W ++++GY Q    L  A ++F+ MPE++ +SWN+++ G 
Sbjct: 170 LLEAQRLFEESPVRD--VFTWTAMVSGYVQ-NGMLDEARRVFDGMPEKNSVSWNAIIAGY 226

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
           V+C +MD A+ LF+ MP ++V SW  MI GYA+ G +  AR  FD MP+RD ++  A++ 
Sbjct: 227 VQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIA 286

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           GY ++GY  +AL +F  M+ +     + ++    LS  A++  ++ G  +H  + K    
Sbjct: 287 GYAQSGYGEEALHLFVEMKRDGE-RLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLE 345

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
                G AL+ MY KCG+I++A  VFE IE+  V  WN MI G A HG G+ A  L   M
Sbjct: 346 SGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESM 405

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500
           ++  I PDD+T  G+L+AC+H GLV +G   F  M + + +    +HY CM+D+LGRAG 
Sbjct: 406 KKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGR 465

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560
           ++ A+NL+++MP EP+   W  LL A R + N  +GE  AK +  M+  NS  YVLLSN+
Sbjct: 466 LDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNL 525

Query: 561 FAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +A  G W D  R+R  M++R +KK+PG SW+E++  +H F V D    +   IY  L+ +
Sbjct: 526 YAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEEL 585



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 146/466 (31%), Positives = 221/466 (47%), Gaps = 63/466 (13%)

Query: 155 FLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR 214
           FL+   +   VR   L  AR LFD+M  RD VS+N+M+ GY ++G ++ A+E+FD MP  
Sbjct: 31  FLERHDLRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPC- 89

Query: 215 ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFD 274
            +N ISWN +L  Y Q    ++ A ++FE   + +LISWN M+ G VK  ++ DA+ +FD
Sbjct: 90  -KNSISWNGMLAAYVQ-NGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFD 147

Query: 275 KMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEI 334
           +MP+RD VSW  MI GYA+ G +  A+RLF+E P RDV    AM+ GYV+NG   +A  +
Sbjct: 148 RMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRV 207

Query: 335 FDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYS 394
           FD M        +  S   +++   Q   +D+     R L +     N      +I  Y+
Sbjct: 208 FDGMP-----EKNSVSWNAIIAGYVQCKRMDQA----RELFEAMPCQNVSSWNTMITGYA 258

Query: 395 KCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTG 454
           + G I  A   F+++       W A+I G A  G GE A  L +EM+R     +  TFT 
Sbjct: 259 QNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTS 318

Query: 455 LLNACA-----------HAGLVKEGL------------------------LCFELMRRIH 479
            L+ CA           H  +VK GL                        + FE +    
Sbjct: 319 TLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIE--- 375

Query: 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPME---PNDVIWRTLLSACRNYENLNVG 536
             E E+  +  M+    R G  + A  L E M      P+DV    +LSAC +   ++ G
Sbjct: 376 --EKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKG 433

Query: 537 EPVAKHLIGMD-----SSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
               ++   M      ++NS  Y  + ++    G  +DA+ +   M
Sbjct: 434 ---TEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNM 476



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 135/287 (47%), Gaps = 32/287 (11%)

Query: 246 PERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFD 305
           PE D +  +  L GCV+   +  A+ LFD+MP+RDVVSW  M+ GYA+ G V  A+ +FD
Sbjct: 27  PEFDFLERHD-LRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFD 85

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLV----IVLSAIAQL 361
           EMP ++ ++ N M+  YV+NG    A  +F++          D  L+    ++   + + 
Sbjct: 86  EMPCKNSISWNGMLAAYVQNGRIEDARRLFESKA--------DWELISWNCMMGGYVKRN 137

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
             +D      R  E+D+ S N      +I  Y++ G +  A ++FE+     V  W AM+
Sbjct: 138 RLVDARGIFDRMPERDEVSWN-----TMISGYAQNGELLEAQRLFEESPVRDVFTWTAMV 192

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
           +G   +G+ + A  +   M     E + +++  ++        + +    FE M      
Sbjct: 193 SGYVQNGMLDEARRVFDGMP----EKNSVSWNAIIAGYVQCKRMDQARELFEAM------ 242

Query: 482 EP--ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
            P   +  +  M+    + G I  ARN  + MP + + + W  +++ 
Sbjct: 243 -PCQNVSSWNTMITGYAQNGDIAQARNFFDRMP-QRDSISWAAIIAG 287



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 94/204 (46%), Gaps = 15/204 (7%)

Query: 16  STLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           STL    +   L    Q+H R++  G     ++   L+  +    C  + +   YI F+ 
Sbjct: 318 STLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCK--CGNIDD--AYIVFE- 372

Query: 76  HAFREKKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
               E+K+   WN +I  Y+ HG   KEAL++F  M   G+  D  +   VL ACS  GL
Sbjct: 373 --GIEEKEVVSWNTMIAGYARHGFG-KEALMLFESMKKTGILPDDVTMVGVLSACSHTGL 429

Query: 135 IEEGLQ-IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMI 192
           +++G +  + + +     ++     C+I L  R G L+ A+ L   M    D+ ++ +++
Sbjct: 430 VDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALL 489

Query: 193 DGYVKSGNIE----SARELFDSMP 212
                 GN E    +A+ +F+  P
Sbjct: 490 GASRIHGNTELGEKAAKMIFEMEP 513


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 212/594 (35%), Positives = 325/594 (54%), Gaps = 90/594 (15%)

Query: 78  FREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
           F   ++P   +WN +++ ++   DP  AL M+  M+  G   + +S   +LK+C++    
Sbjct: 21  FETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKAF 80

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
           EEG QIH  + K+  G D ++   LIS+Y R                             
Sbjct: 81  EEGRQIHAQVLKLGCGLDRYVHTSLISMYAR----------------------------- 111

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
             +G +E AR++FD+     R+++S  +++ GYA  +   + A ++F+++ ERD++SWN+
Sbjct: 112 --NGGLEDARKVFDASS--HRDVVSCTALITGYAS-RGDFRSARKVFDEITERDVVSWNA 166

Query: 256 MLHGCVKCGKMDDAQALFDKMPK--------------------------RDVVSWAN--- 286
           M+ G V+ G+ ++A  LF +M +                          R V SW +   
Sbjct: 167 MITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDD 226

Query: 287 --------------MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
                         +ID Y+K G V+ A  LF+ +  +DVV+ N ++GGY       +AL
Sbjct: 227 DDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEAL 286

Query: 333 EIFDNM----QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV- 387
            +F  M    +C     P+D +L+ VL A A LG ID G  IH Y++K    +  +  + 
Sbjct: 287 LLFQEMLRSGEC-----PNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLR 341

Query: 388 -ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE 446
            +LIDMY+KCG IE A +VF  +   S+  WNAMI G A+HG    AFDL   M    +E
Sbjct: 342 TSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVE 401

Query: 447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARN 506
           PDDITF GLL+AC+H+GL+  G   F+ M + + L P+L+HYGCM+D+LG +G  + A  
Sbjct: 402 PDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEE 461

Query: 507 LIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGM 566
           +I  MPMEP+ VIW +LL AC+ + NL + E  A+ LI ++  NS SYVLLSN++A  G 
Sbjct: 462 MIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGR 521

Query: 567 WNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           W D  RVR ++  + +KK+PGCS IE++ VVHEF + DK   + R+IY+ML+ M
Sbjct: 522 WEDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRREIYHMLEEM 575



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 127/421 (30%), Positives = 191/421 (45%), Gaps = 86/421 (20%)

Query: 208 FDSMP--------IRERNLISWNSVLNGYAQ----------------------------- 230
           FD +P        I+E NL+ WN++L G+A                              
Sbjct: 11  FDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFL 70

Query: 231 LKS---------GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV 281
           LKS         G Q   Q+ +     D     S++    + G ++DA+ +FD    RDV
Sbjct: 71  LKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDV 130

Query: 282 VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
           VS   +I GYA  G    AR++FDE+ +RDVV+ NAM+ GYV NG   +ALE+F  M   
Sbjct: 131 VSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMM-R 189

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ----FSLNGKHGVALIDMYSKCG 397
             + PD+ +LV V+SA AQ G I+ G  +H +++ D     FS + K   ALID+YSKCG
Sbjct: 190 TNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCG 249

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            +E A  +FE +    V  WN +I G     L + A  L  EM R    P+D+T   +L 
Sbjct: 250 DVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLP 309

Query: 458 ACAHAGLVKEG-LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM----- 511
           ACAH G +  G  +   + +++  +  E      ++D+  + G IEAA  +   M     
Sbjct: 310 ACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSL 369

Query: 512 -----------------------------PMEPNDVIWRTLLSACRNYENLNVGEPVAKH 542
                                         +EP+D+ +  LLSAC +   L++G  + K 
Sbjct: 370 SSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKS 429

Query: 543 L 543
           +
Sbjct: 430 M 430



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 134/522 (25%), Positives = 230/522 (44%), Gaps = 105/522 (20%)

Query: 19  LLLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSS---------------- 59
            LL+ C   K   +  QIHA+++  G   + ++ T L++ ++ +                
Sbjct: 69  FLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHR 128

Query: 60  ---PCTPL-TEFARYIFFK--YHAFRE--KKDPFLWNAIIKTYSHGLDPKEALVMFCLML 111
               CT L T +A    F+     F E  ++D   WNA+I  Y      +EAL +F  M+
Sbjct: 129 DVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMM 188

Query: 112 DNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKV----AFGSDLFLQNCLISLYVRC 167
              V  D+ +   V+ AC++ G IE G Q+H  +        F S L + N LI LY +C
Sbjct: 189 RTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKC 248

Query: 168 GYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNG 227
           G +E A  LF+ +  +D VS+N++I GY  +   + A  LF  M                
Sbjct: 249 GDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEM---------------- 292

Query: 228 YAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR------DV 281
              L+SG         + P  + ++  S+L  C   G +D  + +   + K+      + 
Sbjct: 293 ---LRSG---------ECP--NDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNET 338

Query: 282 VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
               ++ID YAK G ++ A ++F+ M  R + + NAM+ G+  +G +  A ++F  M+  
Sbjct: 339 SLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGN 398

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIEN 401
             + PDD + V +LSA +  G +D G  I + + +D ++L  K                 
Sbjct: 399 -RVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQD-YNLTPK----------------- 439

Query: 402 AIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461
                       ++H+  MI+ L   GL + A +++  M    +EPD + +  LL AC  
Sbjct: 440 ------------LEHYGCMIDLLGHSGLFKEAEEMIHTM---PMEPDGVIWCSLLKACKK 484

Query: 462 AGLVKEGLLCFELMRRIHKLEPELQ-HYGCMVDILGRAGHIE 502
            G ++   L     +++ K+EPE    Y  + +I   AG  E
Sbjct: 485 HGNLE---LAESFAQKLIKIEPENSGSYVLLSNIYATAGRWE 523


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 217/635 (34%), Positives = 345/635 (54%), Gaps = 90/635 (14%)

Query: 28  NDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLW 87
           + V  IHA+MI TG     +  +KL+     SP      +A  +F       ++ +  +W
Sbjct: 2   SSVRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTI----QEPNLLIW 57

Query: 88  NAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRK 147
           N + + ++   DP  AL ++ +M+  G+  D ++   +LK+C++  + +EG QIHG + K
Sbjct: 58  NTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLK 117

Query: 148 VAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAREL 207
           + F  D+++   LIS+Y                                ++G +E AR++
Sbjct: 118 LGFDLDIYVHTSLISMYA-------------------------------QNGRLEDARKV 146

Query: 208 FDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMD 267
           FD      R+++S+ +++ GY   +  ++ A ++F+++P +D++SWN+M+ G V+ G   
Sbjct: 147 FDISS--HRDVVSYTALIAGYVS-RGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYK 203

Query: 268 DAQALFDKM-------PK--------------------RDVVSWAN-------------M 287
           +A  LF +M       P                     R V SW N             +
Sbjct: 204 EALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNAL 263

Query: 288 IDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD 347
           ID Y+K G V+ A  LFD +  +DV++ N ++GGY       +AL +F  M       P+
Sbjct: 264 IDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEM-LRSGETPN 322

Query: 348 DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG------KHGVALIDMYSKCGSIEN 401
           D +++ +L A A LG ID G  IH Y+ K    L G          +LIDMY+KCG I+ 
Sbjct: 323 DVTMLSILPACAHLGAIDIGRWIHVYINK---KLKGVVTNVSSLQTSLIDMYAKCGDIDA 379

Query: 402 AIKVFEQ-IEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460
           A +VF+  + + S+  WNAMI+G A+HG    AFD+   M    IEPDDITF GLL+AC+
Sbjct: 380 AQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACS 439

Query: 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIW 520
           H+G++  G   F  M R +++ P+L+HYGCM+D+LG +G  + A  +I  MPMEP+ VIW
Sbjct: 440 HSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIW 499

Query: 521 RTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580
            +LL AC+ + NL +GE  AK LI ++  NS SYVLLSN++A  G WN+  ++R+++ ++
Sbjct: 500 CSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDK 559

Query: 581 NL-KKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
            + KK+PGCS IE++ VVHEF + DK   Q R+IY
Sbjct: 560 GMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIY 594



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 128/486 (26%), Positives = 213/486 (43%), Gaps = 76/486 (15%)

Query: 19  LLLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP--------------- 60
            LL+ C   K   +  QIH  ++  GF  + ++ T L++ ++ +                
Sbjct: 94  FLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHR 153

Query: 61  --CTPLTEFARYIFFKYHAFREK-------KDPFLWNAIIKTYSHGLDPKEALVMFC-LM 110
              +     A Y+   Y    +K       KD   WNA+I  Y    + KEAL +F  +M
Sbjct: 154 DVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMM 213

Query: 111 LDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYL 170
           +   V  D+ +   V+ AC++   IE G  +H  +    F S+L + N LI LY + G +
Sbjct: 214 MMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEV 273

Query: 171 EFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ 230
           E A +LFD +  +D +S+N++I GY      + A  LF  M                   
Sbjct: 274 ETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEM------------------- 314

Query: 231 LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK--RDVVS----- 283
           L+SG         + P    ++  S+L  C   G +D  + +   + K  + VV+     
Sbjct: 315 LRSG---------ETPND--VTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSL 363

Query: 284 WANMIDGYAKLGRVDIARRLFD-EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
             ++ID YAK G +D A+++FD  M  R +   NAM+ G+  +G +  A +IF  M+   
Sbjct: 364 QTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMN- 422

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD-QFSLNGKHGVALIDMYSKCG---S 398
            + PDD + V +LSA +  G +D G  I R + +  + +   +H   +ID+    G    
Sbjct: 423 GIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKE 482

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI-TFTGLLN 457
            E  I       DG +  W +++    IHG  EL      ++  + IEP +  ++  L N
Sbjct: 483 AEEMINTMPMEPDGVI--WCSLLKACKIHGNLELGESFAKKL--IKIEPGNSGSYVLLSN 538

Query: 458 ACAHAG 463
             A AG
Sbjct: 539 IYAAAG 544


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 206/597 (34%), Positives = 341/597 (57%), Gaps = 21/597 (3%)

Query: 12  NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
           +S +    LLR+C +++ +NQ+HA ++  G      +T++++AS+ + P      +AR +
Sbjct: 10  SSARHVRELLRRCGSVHRLNQLHAHLVVHGV---DDVTSQILASYCALPAGGGVWYARQL 66

Query: 72  FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
           F +        D F++N++I+ Y +   P+EAL +   M+  G+  ++F+   +LKAC+R
Sbjct: 67  FDRI----PDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACAR 122

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
           +   E  +  HG++ K+ F   +F+ N L+  Y   G L  +R+ FD+M  R+ VS+NSM
Sbjct: 123 VQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSM 182

Query: 192 IDGYVKSGNIESARELFDSMPIR-----ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP 246
           I+GY ++GN   A  LF+ M  +     E  L+S     +    L+ G      +  +  
Sbjct: 183 INGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGC 242

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
             DLI  N+++    KCG +  A   FD MP ++ VSW +M+   AK   +D AR  F++
Sbjct: 243 RIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQ 302

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           +P++ +++ NAM+  YV+ G   +AL++++ M+  L L PD+ +L  VLSA  QLG +  
Sbjct: 303 IPEKSIISWNAMISCYVQGGRFHEALDLYNRMKL-LGLAPDEFTLAAVLSACGQLGDLAS 361

Query: 367 GVAIHRYLEKDQFSLNGKHGVAL----IDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
           G  IH  + +D F      GVAL    +DMY++CG ++ AI +F ++   +V  WNA+I 
Sbjct: 362 GKMIHDCI-RDNFH---NPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIG 417

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
            LA+HG  + A      M   +  PD+ITF  LL+AC H GL++ G   F+ MR ++ ++
Sbjct: 418 ALAMHGRAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVK 477

Query: 483 PELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKH 542
           P ++HY CMVD+LGR G +  A +LI+DMPM P+ V+W  LL ACR + ++ +G+ V K 
Sbjct: 478 PGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQ 537

Query: 543 LIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHE 599
           L+ ++  +   +VL+SNM      W D +R+R +M+E  +KK  G S IE    +HE
Sbjct: 538 LLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETNSNIHE 594


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 209/631 (33%), Positives = 341/631 (54%), Gaps = 80/631 (12%)

Query: 25  KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDP 84
           + L  +  IHA+MI TG     +  +KL+     SP      +A  +F       ++ + 
Sbjct: 1   QILQSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETI----QEPNL 56

Query: 85  FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGL 144
            +WN + + ++   DP  AL ++  M+  G+  + ++   +LK+C++    +EG QIHG 
Sbjct: 57  LIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGH 116

Query: 145 LRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESA 204
           + K+    DL++   LIS+YV+                               +G +E A
Sbjct: 117 VLKLGCDLDLYVHTSLISMYVQ-------------------------------NGRLEDA 145

Query: 205 RELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCG 264
            ++FD  P   R+++S+ +++ GYA  +  ++ A ++F+++P +D++SWN+M+ G  + G
Sbjct: 146 HKVFDESP--HRDVVSYTALIKGYAS-RGYIENAQKMFDEIPVKDVVSWNAMISGYAETG 202

Query: 265 KMDDAQALFDKMPK--------------------------RDVVSWAN------------ 286
              +A  LF  M K                          R V SW +            
Sbjct: 203 NYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVN 262

Query: 287 -MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLH 345
            +ID Y+K G ++ A  LF+ +P +DV++ N ++GGY       +AL +F  M       
Sbjct: 263 ALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEM-LRSGET 321

Query: 346 PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV--ALIDMYSKCGSIENAI 403
           P+D +++ +L A A LG ID G  IH Y++K    +     +  +LIDMY+KCG IE A 
Sbjct: 322 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAH 381

Query: 404 KVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAG 463
           +VF  I   S+  WNAMI G A+HG  + +FD+   M +  IEPDDITF GLL+AC+H+G
Sbjct: 382 QVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSG 441

Query: 464 LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTL 523
           ++  G   F  M + +K+ P+L+HYGCM+D+LG +G  + A  +I  M MEP+ VIW +L
Sbjct: 442 MLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSL 501

Query: 524 LSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583
           L AC+ + N+ +GE  A++LI ++  N  SYVLLSN++A  G WN+    R+++ ++ +K
Sbjct: 502 LKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMK 561

Query: 584 KLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           K+PGCS IE++ VVHEF + DK   + R+IY
Sbjct: 562 KVPGCSSIEIDSVVHEFIIGDKFHPRNREIY 592


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 212/651 (32%), Positives = 347/651 (53%), Gaps = 88/651 (13%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLT-TKLVASFSSSPCTPLTEFARYIFF 73
             +L LL  CKTL  + QIH+++I TG + NTH   +KL+   + SP   L+       +
Sbjct: 29  HPSLTLLSNCKTLQTLKQIHSQIIKTG-LHNTHFALSKLIEFCAVSPHGDLS-------Y 80

Query: 74  KYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
               F+  ++P   +WN +I+  S    P  AL  +  M+ +G   ++++   + K+C++
Sbjct: 81  ALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTK 140

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
           +    EG Q+H  + K+    + F+   LI++Y                           
Sbjct: 141 IRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYA-------------------------- 174

Query: 192 IDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI 251
                ++G + +AR +FD   +R+   +S+ +++ GYA  K  L  A ++F+++P RD++
Sbjct: 175 -----QNGELVNARLVFDKSSMRDA--VSFTALITGYAS-KGFLDEARELFDEIPVRDVV 226

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVV---------------------------SW 284
           SWN+M+ G  + G++++A A F++M +  V                            SW
Sbjct: 227 SWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSW 286

Query: 285 AN-------------MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKA 331
                          +ID Y K G ++ A  LF+++  ++VV+ N M+GGY       +A
Sbjct: 287 IEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEA 346

Query: 332 LEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV--AL 389
           L +F  M  +  + P+D + + +L A A LG +D G  +H Y++K+  S+     +  +L
Sbjct: 347 LGLFRRMM-QSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSL 405

Query: 390 IDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD 449
           IDMY+KCG +  A ++F+ +   S+  WNAMI+G A+HG  + A  L   M      PDD
Sbjct: 406 IDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDD 465

Query: 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE 509
           ITF G+L AC HAGL+  G   F  M + +K+ P+L HYGCM+D+ GRAG  + A  L++
Sbjct: 466 ITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVK 525

Query: 510 DMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWND 569
           +M M+P+  IW +LL ACR +  + + E VAKHL  ++  N S+YVLLSN++AG G W D
Sbjct: 526 NMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWED 585

Query: 570 ARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
             ++R+ + +  +KK+PGCS IE++ VVHEF V DK   Q  +IY MLD +
Sbjct: 586 VAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEI 636


>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 633

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 219/620 (35%), Positives = 351/620 (56%), Gaps = 27/620 (4%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LL  CKT+   +QI+A +I TG   N HL+T L   ++SS  +     +  +F +     
Sbjct: 20  LLSSCKTMQQAHQIYAHIIVTGRHNNLHLSTTLFTFYASSSSSQSLHHSHTLFTQI---- 75

Query: 80  EKKDPFLWNAIIKTYSH-GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR--LGLIE 136
              D FLWNAIIK YS     P+    +F  ML++ V  D F+   +LKAC+   +   +
Sbjct: 76  TNPDIFLWNAIIKAYSQIHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACANVLISAPQ 135

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G Q+H  + +  FGSD+F+ N L++ Y   G +  A ++FD+  +RD VS+N+MI+G+ 
Sbjct: 136 FGFQVHCHVLRNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTMINGFA 195

Query: 197 KSGNIESARELFDSMP---IRERN-----LISWNSVLNGYAQLKSGLQFAWQIFEKMP-- 246
           + G++     +F  M    +R        L+S  SVL  Y   + G Q    ++ ++   
Sbjct: 196 RKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDY---RIGRQVHGLVYRELGCF 252

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFD--KMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
             +++  N ++    KCG++  A+ +    K  K  V +W +++  YA  G V +ARRLF
Sbjct: 253 GGNVLLVNKLVDMYAKCGRLVMAETVLSVVKPGKSVVAAWTSLVSAYALRGEVKVARRLF 312

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
           D+M +RDVV+  AM+ GY   G   +ALE+F  ++  L + PD+ ++V  LSA A+LG +
Sbjct: 313 DQMGERDVVSWTAMISGYSHAGCFQEALELFVKLE-GLGMKPDEVAVVAALSACARLGAL 371

Query: 365 DKGVAIHRYLEKDQF--SLNGKHGVALIDMYSKCGSIENAIKVFEQIED--GSVDHWNAM 420
           + G  IHR    + +  S+N     A++DMY+KCGSI+ A+ VF +  D   +   +N++
Sbjct: 372 ELGRRIHRQYAGENWTCSINRGFTSAVVDMYAKCGSIDIALDVFRKTSDDKKTTFLYNSI 431

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           I+GLA HG GE A +L  EM  L ++PD+ITF  +L+AC H GLV  G   FE M  ++ 
Sbjct: 432 ISGLAHHGRGEYAKNLFEEMGLLGLKPDNITFVAVLSACGHCGLVDFGKKLFESMFTVYG 491

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           + PE++HYGCMVD+LGRAGH++ A  LI  MP + N VIWR LLSAC+ + ++ +    +
Sbjct: 492 VSPEMEHYGCMVDLLGRAGHLDEAHRLILKMPFKANAVIWRALLSACKVHGDVALARVAS 551

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
             L+ +   + + YV+LSNM +     ++A  +R  +    ++K PG S++E+   +H+F
Sbjct: 552 YELVELQHDHGAGYVMLSNMLSDTDQHDEAASLRKAIDNVGIQKPPGWSYVEMNRSLHKF 611

Query: 601 FVRDKSRLQVRDIYYMLDNM 620
              DKS  + +    ML ++
Sbjct: 612 LAGDKSHPEAKTTELMLRDI 631


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 196/507 (38%), Positives = 299/507 (58%), Gaps = 8/507 (1%)

Query: 121 SASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYV--RCGYLEFARQLFD 178
           +A+  L    R   +EE  QIHG + K     D    + L++       G L +AR +FD
Sbjct: 17  NAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFD 76

Query: 179 KMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQLKSG-- 234
           ++   ++  +N+MI GY  S   E A  L+  M       N  ++  +L   + + +   
Sbjct: 77  RIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEE 136

Query: 235 -LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAK 293
             Q    I +     ++ + NS+L+   K G +  A+ LFD++ +RD VSW +MIDGY K
Sbjct: 137 TQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTK 196

Query: 294 LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI 353
            G +++A  +F+ MP+R++++  +M+ G V  G   +AL +F  MQ    +  D+ +LV 
Sbjct: 197 CGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTA-GIKLDNVALVS 255

Query: 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
            L A A LG +D+G  IH Y++K +  ++   G  LIDMY+KCG +E AI+VF ++E+  
Sbjct: 256 TLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKG 315

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE 473
           V  W AMI+G AIHG G  A +  M+M+   +EP+ +TFTG+L AC+HAGLV E  L FE
Sbjct: 316 VSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFE 375

Query: 474 LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENL 533
            M RIH  +P ++HYGCMVD+LGRAG ++ A  LIE+MP++PN  IW  LL+AC  + NL
Sbjct: 376 SMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNL 435

Query: 534 NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
            +G+ + K LI +D  +   Y+ L+++ A  G WN A RVR  MKE+ + KLPGCS I +
Sbjct: 436 ELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISV 495

Query: 594 EGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            G  HEF   D+S  Q+++I +ML+ +
Sbjct: 496 NGTAHEFLAGDESHPQIKEIDHMLEQI 522



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 138/439 (31%), Positives = 242/439 (55%), Gaps = 18/439 (4%)

Query: 4   SANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTP 63
           ++  +   N+ Q TL LL++C  + ++ QIH +M+ TG I +    +KL+A F +SP + 
Sbjct: 9   TSQLSSESNAAQ-TLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLA-FCASPNSG 66

Query: 64  LTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSAS 123
              +AR +F +   FR   + F+WN +I+ YS+  +P+EAL+++  ML + V  + ++  
Sbjct: 67  SLAYARTVFDRI--FR--PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFP 122

Query: 124 LVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183
            +LKACS +   EE  QIH  + K+ FGS+++  N L+++Y + G ++ AR LFD++  R
Sbjct: 123 FLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQR 182

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLN---GYAQLKSGLQFAWQ 240
           D+VS+NSMIDGY K G IE A E+F+ MP  ERN+ISW S+++   G  + K  L    +
Sbjct: 183 DTVSWNSMIDGYTKCGEIEMAYEIFNHMP--ERNIISWTSMISGCVGAGKPKEALNLFHR 240

Query: 241 IFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV----VSWANMIDGYAKLGR 296
           +     + D ++  S L  C   G +D  + +   + K ++    +    +ID YAK G 
Sbjct: 241 MQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGD 300

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           ++ A  +F +M ++ V    AM+ GY  +G   +ALE F  MQ    + P+  +   +L+
Sbjct: 301 LEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTA-GVEPNQMTFTGILT 359

Query: 357 AIAQLGHIDKGVAIHRYLEK-DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSV 414
           A +  G + +   +   +E+   F  + +H   ++D+  + G ++ A ++ E +    + 
Sbjct: 360 ACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNA 419

Query: 415 DHWNAMINGLAIHGLGELA 433
             W A++N   IHG  EL 
Sbjct: 420 AIWGALLNACHIHGNLELG 438


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 212/641 (33%), Positives = 345/641 (53%), Gaps = 80/641 (12%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
             +L LL  CKTL  +  IHA+MI TG     +  ++L+     SP      +A  +F  
Sbjct: 3   HPSLSLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFET 62

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
                ++ +  +WN + + ++   DP  A+ ++  M+  G+  + ++   +LK+C++L +
Sbjct: 63  I----QEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKV 118

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
            +EG QIHG + K+ +  DL++   LIS+YV                             
Sbjct: 119 SKEGQQIHGHVLKLGYELDLYVHTSLISMYV----------------------------- 149

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN 254
             K+G  + A ++FD      R+++S+ +++ GYA  +  ++ A ++F+++P +D++SWN
Sbjct: 150 --KNGRWKDAHKVFDGSS--HRDVVSYTALITGYAS-RGYIESAQKMFDEIPVKDVVSWN 204

Query: 255 SMLHGCVKCGKMDDAQALFDKMPK--------------------------RDVVSWAN-- 286
           +++ G    G   +A  LF +M K                          R V SW +  
Sbjct: 205 AIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDH 264

Query: 287 -----------MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
                      +ID Y+K G V+ A  LF  +  +DV++ N M+GGY       +AL +F
Sbjct: 265 GLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLF 324

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV--ALIDMY 393
             M      +P+D +++ +L A AQLG ID G  IH Y++K    +     +  +LIDMY
Sbjct: 325 QEM-LRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMY 383

Query: 394 SKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
           +KCG IE A +VF  +   ++   NAMI G A+HG    AFD+   M +  IEPDDITF 
Sbjct: 384 AKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFV 443

Query: 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPM 513
           GLL+AC+H+G++  G   F  M + +K+ P+L+HYGCM+D+LG  G  + A  +I  M M
Sbjct: 444 GLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTM 503

Query: 514 EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV 573
           EP+ VIW +LL AC+ + N+ +GE  A+ LI ++  N  SYVLLSN++A  G WN+   +
Sbjct: 504 EPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANI 563

Query: 574 RSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           R+++ ++ +KK+PGCS IE++ VVHEF + DK   + R+IY
Sbjct: 564 RALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIY 604


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 211/618 (34%), Positives = 337/618 (54%), Gaps = 77/618 (12%)

Query: 4   SANYNQPCNS-TQSTLLLLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSS 59
           SA  N P +   Q T+L L   K++  +    Q+H  ++ +G  ++ +++  L+  +++ 
Sbjct: 19  SAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHGLVLRSGHFQDHYVSGALLKCYAN- 77

Query: 60  PCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDK 119
           P     +FA  +F          + F+WN +IK         +A+  +  M+ +    +K
Sbjct: 78  PHFSNFDFALKVFSSI----PNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDA-RPNK 132

Query: 120 FSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK 179
           F+   + KACS    ++EG QIHG + K   GSD+ +++  I +Y   G           
Sbjct: 133 FTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFG----------- 181

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAW 239
                                +E AR++F S                             
Sbjct: 182 --------------------RLEDARKMFYS----------------------------- 192

Query: 240 QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDI 299
                  E D++ WN+M+ G +KCG ++ A+ LF +MP +++ SW  MI+G AK G +  
Sbjct: 193 ------GESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGD 246

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           AR+LFDEM +RD ++ ++M+ GY+  G   +ALEIF  MQ E    P    L  VL+A +
Sbjct: 247 ARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQRE-ETRPGRFILSSVLAACS 305

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
            +G ID+G  +H YL+++   L+   G AL+DMY+KCG ++   +VFE++++  +  WNA
Sbjct: 306 NIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNA 365

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           MI GLAIHG  E A +L  +++   ++P+ IT  G+L ACAHAG V +GL  F+ MR  +
Sbjct: 366 MIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFY 425

Query: 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPV 539
            ++PEL+HYGCMVD+LGR+G    A +LI  MPM+PN  +W  LL ACR + N ++ E V
Sbjct: 426 GVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERV 485

Query: 540 AKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHE 599
            K L+ ++  NS  YVLLSN++A +G ++D  ++R +MK+R +K +PG S ++L G VHE
Sbjct: 486 GKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHE 545

Query: 600 FFVRDKSRLQVRDIYYML 617
           F + D S  Q+++IY  L
Sbjct: 546 FKMGDGSHPQMKEIYRKL 563


>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
 gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
          Length = 695

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 195/513 (38%), Positives = 298/513 (58%), Gaps = 9/513 (1%)

Query: 114 GVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFA 173
           G ++      LVLK+C++     +G Q H          D+F+Q  L+  Y + G ++ A
Sbjct: 169 GGAIPSGCIPLVLKSCAQSAASCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSA 228

Query: 174 RQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA---Q 230
              F +M ++D +  N +I GY KSG++E AR LFDSMP   R   SWNS++  YA   +
Sbjct: 229 LMAFKEMPVKDPIPMNCLITGYSKSGDVEEARRLFDSMP--RRTSASWNSMIACYAHGGE 286

Query: 231 LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDD---AQALFDKMPKRDVVSWANM 287
            +  L    Q+  +    + I+  ++   C K G +D    A+A   +   ++V+    +
Sbjct: 287 FREALTLFDQMLREGASPNAITITTVFSICAKTGDLDTGRRARAWIREEDLQNVIVHTAL 346

Query: 288 IDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD 347
           ++ Y K   +D AR  FD MP+RDVVA + M+ GY +NG   ++LE+F+ M+      P+
Sbjct: 347 MEMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKAT-NCKPN 405

Query: 348 DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFE 407
           + +LV VLSA AQLG  + G  I  Y+E     L    G ALIDMY+KCG +  A  VF 
Sbjct: 406 EVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFN 465

Query: 408 QIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKE 467
           ++E   V  WN+MI GLA++G  E A  L  +M    I+P+++TF  LL AC HAGLV +
Sbjct: 466 RMEQKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDK 525

Query: 468 GLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSAC 527
           G+  FE M++   + P+++H  C+VD+L ++G +  A   I DM +EPN VIW TLLSAC
Sbjct: 526 GIAFFEEMKKKQHVSPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWSTLLSAC 585

Query: 528 RNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPG 587
           R + ++ + +  A  L+ ++ +NSS YVLLSN++A  G+W D R +R +M+ +NL+KL  
Sbjct: 586 RAHADVELAKLAAGKLVALEPNNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSA 645

Query: 588 CSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            SWIEL+G VH F V+D    +  +IY ++D +
Sbjct: 646 YSWIELDGEVHRFLVQDTYHPRSAEIYNVVDGL 678



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 193/398 (48%), Gaps = 43/398 (10%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           WN++I  Y+HG + +EAL +F  ML  G S +  + + V   C++ G ++ G +    +R
Sbjct: 274 WNSMIACYAHGGEFREALTLFDQMLREGASPNAITITTVFSICAKTGDLDTGRRARAWIR 333

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           +     ++ +   L+ +YV+C  ++ AR  FD+M  RD V++++MI GY ++G    + E
Sbjct: 334 EEDL-QNVIVHTALMEMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLE 392

Query: 207 LFDSMPIR--ERNLISWNSVLNGYAQLKS---GLQFAWQIFEKMPERDLISWNSMLHGCV 261
           LF+ M     + N ++   VL+  AQL S   G Q    I  +         ++++    
Sbjct: 393 LFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYT 452

Query: 262 KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
           KCG +  A+++F++M ++ VV+W                               N+M+ G
Sbjct: 453 KCGHVARARSVFNRMEQKVVVTW-------------------------------NSMIRG 481

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ-FS 380
              NG++  A+ ++  M  +  + P++ + V +L+A    G +DKG+A    ++K Q  S
Sbjct: 482 LALNGFAEDAIALYRKMVGD-GIQPNEVTFVALLTACTHAGLVDKGIAFFEEMKKKQHVS 540

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHGLGELAFDLLME 439
              +H   ++D+  K G +  A K    +E + +   W+ +++    H   ELA   L  
Sbjct: 541 PQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWSTLLSACRAHADVELA--KLAA 598

Query: 440 MERLSIEPDDITFTGLL-NACAHAGLVKEGLLCFELMR 476
            + +++EP++ +   LL N  A AGL  +     +LMR
Sbjct: 599 GKLVALEPNNSSIYVLLSNIYADAGLWGDVREIRDLMR 636



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 99/222 (44%), Gaps = 35/222 (15%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   W+ +I  YS    P E+L +F  M       ++ +   VL AC++LG  E G Q
Sbjct: 368 RRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQ 427

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           I   +         +L + LI +Y +CG++  AR +F++M  +  V++NSMI G   +G 
Sbjct: 428 IGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKVVVTWNSMIRGLALNGF 487

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
            E A  L+  M                   +  G+Q            + +++ ++L  C
Sbjct: 488 AEDAIALYRKM-------------------VGDGIQ-----------PNEVTFVALLTAC 517

Query: 261 VKCGKMDDAQALFDKMPKRDVVS-----WANMIDGYAKLGRV 297
              G +D   A F++M K+  VS      A ++D   K GR+
Sbjct: 518 THAGLVDKGIAFFEEMKKKQHVSPQVEHCACIVDLLCKSGRL 559


>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
          Length = 751

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 216/610 (35%), Positives = 337/610 (55%), Gaps = 42/610 (6%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSS-SPCTPLTEFARYIFFKYH 76
           L LL++ KT  ++ QIHA M+      N +L TK +A+ SS +   PL +    I     
Sbjct: 156 LSLLQQSKTRANLLQIHAFMLRNALETNPNLFTKFIATCSSIALLAPLYDPLAGIVHARR 215

Query: 77  AFREKK---DPFLWNAIIKTYSHGLDPKEALVMFC-LMLDNGVSVDKFSASLVLKACSRL 132
            F  +    D FL N++IK Y       E+  ++  L  +   + D F+ S++ K+C+  
Sbjct: 216 MFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCALN 275

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
             I EG +IH  +  V F  DL+                               +  +++
Sbjct: 276 MAIWEGQEIHSHVVAVGFCLDLY-------------------------------AATALV 304

Query: 193 DGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLI 251
           D Y K G ++ AR+LFD M   +R+ +SW +++ GY  ++SG +  A ++F++M E+D  
Sbjct: 305 DMYAKFGKMDCARKLFDEMI--DRSQVSWTALIGGY--VRSGDMDNAGKLFDQMIEKDSA 360

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           ++N+M+   VK G M  A+ LFD+MP+R VVSW  MI GY+  G +D AR LFD MP+++
Sbjct: 361 AFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKN 420

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           + + NAM+ GY +N    +AL++F  MQ    L PD+ ++V VL AIA LG +D G  +H
Sbjct: 421 LFSWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVH 480

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
           R++ + +       G ALIDMY+KCG I  +  VF+ + +     WNA+IN  AI+G  +
Sbjct: 481 RFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAK 540

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            A  L MEM      P++IT  G+L+AC H+GLV+EG   F+ M     L P+++HYGCM
Sbjct: 541 EALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAMEEF-GLTPKIEHYGCM 599

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551
           VD+LGRAG ++ A  L+E MP E N +I  + L AC   +++   E V K  I M++ N 
Sbjct: 600 VDLLGRAGCLQEAEKLMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAIKMEAWND 659

Query: 552 SSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVR 611
            +Y++L N++A    W +A  V+ +M+   +KK  GCS IE++  V EF   D+   +  
Sbjct: 660 GNYIMLRNLYANEKRWKEADEVKGLMRRNGVKKEAGCSAIEVDSRVWEFVAGDRVHPKWE 719

Query: 612 DIYYMLDNMW 621
            I+ +L  +W
Sbjct: 720 AIHSVLGQLW 729



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 110/409 (26%), Positives = 192/409 (46%), Gaps = 69/409 (16%)

Query: 17  TLLLLRKCKTLN----DVNQIHARMITTGFIKNTHLTTKLV---ASFSSSPCTPLTEFAR 69
           T  +L K   LN    +  +IH+ ++  GF  + +  T LV   A F    C      AR
Sbjct: 264 TFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDC------AR 317

Query: 70  YIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKAC 129
            +F +       +    W A+I  Y    D   A  +F  M      ++K SA+      
Sbjct: 318 KLFDEMI----DRSQVSWTALIGGYVRSGDMDNAGKLFDQM------IEKDSAAF----- 362

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
                                       N +I  YV+ G +  AR+LFD+M  R  VS+ 
Sbjct: 363 ----------------------------NTMIDAYVKLGDMCSARKLFDEMPERSVVSWT 394

Query: 190 SMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP--- 246
            MI GY  +GN++SAR LFD+MP  E+NL SWN++++GY Q K   + A ++F +M    
Sbjct: 395 IMIYGYSSNGNLDSARSLFDAMP--EKNLFSWNAMISGYXQNKQPYE-ALKLFHEMQSTT 451

Query: 247 --ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN----MIDGYAKLGRVDIA 300
             E D ++  S+L      G +D    +   + ++ +    N    +ID YAK G +  +
Sbjct: 452 SLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKS 511

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
           R +FD MP+++  + NA++  +  NG + +AL +F  M  + ++ P++ +++ VLSA   
Sbjct: 512 RGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFM-PNEITMIGVLSACNH 570

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
            G +++G    + +E+   +   +H   ++D+  + G ++ A K+ E +
Sbjct: 571 SGLVEEGKRWFKAMEEFGLTPKIEHYGCMVDLLGRAGCLQEAEKLMESM 619


>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 595

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 212/606 (34%), Positives = 341/606 (56%), Gaps = 46/606 (7%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L   K L+++NQ+ +++I +G  ++    T  +    S   T    F R  F   H    
Sbjct: 14  LESWKNLHELNQVLSQLIVSGLSQHPLFATSAIKKLCSHSVT----FPRATFLFDHL--H 67

Query: 81  KKDPFLWNAIIKTYSHGLDPKEAL-VMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
             D F  N II+ Y+   D   AL   +C ML   V  + ++  L++K C+ +G   EGL
Sbjct: 68  HPDAFHCNTIIRAYARKPDFPAALRFYYCKMLARSVPPNHYTFPLLIKVCTDIGSFREGL 127

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           + H  + K  FGSDLF +N LI +Y           +F ++G                  
Sbjct: 128 KGHARIVKFGFGSDLFARNSLIRMY----------SVFGRIG------------------ 159

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLH 258
              +AR +FD     +  L+S+NS+++GY  +K+G +  A ++F +MP+RD++SWN ++ 
Sbjct: 160 ---NARMVFDESCWLD--LVSYNSMIDGY--VKNGEIGAARKVFNEMPDRDVLSWNCLIA 212

Query: 259 GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK--RDVVACN 316
           G V  G +D A  LF+ +P+RD VSW  MIDG A++G V +A + FD MP   R+VV+ N
Sbjct: 213 GYVGVGDLDAANELFETIPERDAVSWNCMIDGCARVGNVSLAVKFFDRMPAAVRNVVSWN 272

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
           +++  + R     + L +F  M       P++A+LV VL+A A LG +  G+ +H ++  
Sbjct: 273 SVLALHARVKNYGECLMLFGKMVEGREAVPNEATLVSVLTACANLGKLSMGMWVHSFIRS 332

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
           +    +      L+ MY+KCG+++ A  VF+++   SV  WN+MI G  +HG+G+ A +L
Sbjct: 333 NNIKPDVLLLTCLLTMYAKCGAMDLAKGVFDEMPVRSVVSWNSMIMGYGLHGIGDKALEL 392

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
            +EME+   +P+D TF  +L+AC HAG+V EG   F+LM+R++K+EP+++HYGCMVD+L 
Sbjct: 393 FLEMEKAGQQPNDATFISVLSACTHAGMVMEGWWYFDLMQRVYKIEPKVEHYGCMVDLLA 452

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556
           RAG +E +  LI  +P++    IW  LLS C N+ +  +GE VAK  I ++  +   Y+L
Sbjct: 453 RAGLVENSEELIRMVPVKAGSAIWGALLSGCSNHLDSELGEIVAKRFIELEPQDIGPYIL 512

Query: 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYM 616
           LSNM+A  G W+D   VR M+KE+ L+K    S + LE    + +V++ S  + + +Y M
Sbjct: 513 LSNMYAAKGRWDDVEHVRLMIKEKGLQKEAASSLVHLEDFESK-YVKNNSGYRKKIMYSM 571

Query: 617 LDNMWT 622
           L  + T
Sbjct: 572 LSELGT 577


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 219/634 (34%), Positives = 353/634 (55%), Gaps = 43/634 (6%)

Query: 23  KCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF--------FK 74
           + K+  D  +IHAR+I T F     +  +LV ++         E AR +F        F 
Sbjct: 31  RSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGK---CGYFEDARKVFDRMPQRNTFS 87

Query: 75  YHA-----------------FREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGV 115
           Y+A                 F+   +P    WNA++  ++     +EAL  F  M     
Sbjct: 88  YNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDF 147

Query: 116 SVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQ 175
            ++++S    L AC+ L  +  G+QIH L+ K  +  D+++ + L+ +Y +CG +  A++
Sbjct: 148 VLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQR 207

Query: 176 LFDKMGIRDSVSYNSMIDGYVKSGNIESARELF-----DSMPIRERNLISWNSVLNGYAQ 230
            FD M +R+ VS+NS+I  Y ++G    A E+F     + +   E  L S  S    ++ 
Sbjct: 208 AFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSA 267

Query: 231 LKSGLQFAWQIFEKMPER-DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMID 289
           ++ GLQ   ++ ++   R DL+  N+++    KC ++++A+ +FD+MP R+VVS  +M+ 
Sbjct: 268 IREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVC 327

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
           GYA+   V  AR +F  M +++VV+ NA++ GY +NG + +A+ +F  ++ E  + P   
Sbjct: 328 GYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRE-SIWPTHY 386

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH------GVALIDMYSKCGSIENAI 403
           +   +L+A A L  +  G   H  + K  F            G +LIDMY KCG +E+  
Sbjct: 387 TFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGC 446

Query: 404 KVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAG 463
            VFE++ +  V  WNAMI G A +G G  A ++  +M     +PD +T  G+L+AC+HAG
Sbjct: 447 LVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAG 506

Query: 464 LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTL 523
           LV+EG   F  MR    L P   H+ CMVD+LGRAG ++ A +LI+ MPM+P++V+W +L
Sbjct: 507 LVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSL 566

Query: 524 LSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583
           L+AC+ + N+ +G+ VA+ L+ +D  NS  YVLLSNM+A LG W D  RVR  M++R + 
Sbjct: 567 LAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVI 626

Query: 584 KLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           K PGCSWIE++  VH F V+DK     +DI+ +L
Sbjct: 627 KQPGCSWIEIQSRVHVFMVKDKRHPLKKDIHLVL 660



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 121/384 (31%), Positives = 198/384 (51%), Gaps = 44/384 (11%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +L +C R     +  +IH  + K  F S++F+QN L+  Y +CGY E AR++FD+M  R+
Sbjct: 25  LLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRN 84

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244
           + SYN+++    K G ++ A  +F SMP  E +  SWN++++G+AQ     + A + F  
Sbjct: 85  TFSYNAVLSVLTKFGKLDEAFNVFKSMP--EPDQCSWNAMVSGFAQ-HDRFEEALRFFVD 141

Query: 245 MPERDLI----SWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGR 296
           M   D +    S+ S L  C     ++    +   + K     DV   + ++D Y+K G 
Sbjct: 142 MHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGV 201

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           V  A+R FD M  R++V+ N+++  Y +NG + KALE+F  M  +  + PD+ +L  V+S
Sbjct: 202 VACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVF-VMMMDNGVEPDEITLASVVS 260

Query: 357 AIAQLGHIDKGVAIH-RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE----- 410
           A A    I +G+ IH R +++D++  +   G AL+DMY+KC  +  A  VF+++      
Sbjct: 261 ACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVV 320

Query: 411 --------------------------DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS 444
                                     + +V  WNA+I G   +G  E A  L + ++R S
Sbjct: 321 SETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRES 380

Query: 445 IEPDDITFTGLLNACAHAGLVKEG 468
           I P   TF  LLNACA+   +K G
Sbjct: 381 IWPTHYTFGNLLNACANLADLKLG 404


>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 619

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 207/614 (33%), Positives = 337/614 (54%), Gaps = 55/614 (8%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF--ARYIFFKYHA 77
           LLR C T   ++QI A+++T G   N ++T   + +     C  L     AR +F K   
Sbjct: 28  LLRTCGTCVRLHQIQAQIVTHGLEGNDYVTPSFITA-----CARLGGIRRARRVFDK--- 79

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
              + +   WNA+ + Y+      + +V+F  M   G S + F+  +V+K+C+     +E
Sbjct: 80  -TAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAAKE 138

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLY-VRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           G ++H ++ K  F S+ F+   LI +Y +R G                            
Sbjct: 139 GEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVF-------------------------- 172

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
               +  A ++F  M  R++N+ +W +++  +   +  +  A ++F+  P+RD++ WN +
Sbjct: 173 ----VADAYKVFAEM--RDKNVFAWTAIVAAHVACRDMVS-ARRLFDLAPQRDVVLWNVV 225

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
           + G ++ G M  A+ LFD+MP RDV+SW  ++ GYA  G V+   +LF+EMP R+V + N
Sbjct: 226 VSGYIELGDMVAARELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWN 285

Query: 317 AMMGGYVRNGYSMKALEIFDNM----------QCELYLHPDDASLVIVLSAIAQLGHIDK 366
            ++GGYVRNG   +ALE F  M            +  + P+D ++V VL+A ++LG ++ 
Sbjct: 286 GLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEM 345

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G  +H Y E   +  N   G ALIDMY+KCG IE A+ VF+ ++   +  WN +INGLA+
Sbjct: 346 GKWVHVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAM 405

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           HG    A  L   M+R    PD +TF G+L+AC H GLV+ GLL F+ M   + + P+++
Sbjct: 406 HGHVADALSLFERMKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIE 465

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HYGCMVD+LGRAG I+ A +++  MPMEP+ VIW  LL ACR Y+N+ + E   + LI +
Sbjct: 466 HYGCMVDLLGRAGLIDKAVDIVRKMPMEPDAVIWAALLGACRMYKNVEMAELALQRLIEL 525

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           + +N  ++V++SN++  LG   D  R++  M++   +K+PGCS I     + EF+  D+ 
Sbjct: 526 EPNNPGNFVMVSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSVIGCNDSMVEFYSLDER 585

Query: 607 RLQVRDIYYMLDNM 620
             +   IY  L  +
Sbjct: 586 HPETDSIYRALQGL 599



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 6/171 (3%)

Query: 255 SMLHGCVKCGKMDDAQA--LFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
           S+L  C  C ++   QA  +   +   D V+  + I   A+LG +  ARR+FD+  + + 
Sbjct: 27  SLLRTCGTCVRLHQIQAQIVTHGLEGNDYVT-PSFITACARLGGIRRARRVFDKTAQPNG 85

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
              NAM  GY +    +  + +F  M       P+  +  +V+ + A      +G  +H 
Sbjct: 86  ATWNAMFRGYAQANCHLDVVVLFARMH-RAGASPNCFTFPMVVKSCATANAAKEGEEVHC 144

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGS--IENAIKVFEQIEDGSVDHWNAMI 421
            + K  F  N   G ALI MYS  G   + +A KVF ++ D +V  W A++
Sbjct: 145 VVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTAIV 195


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 203/540 (37%), Positives = 309/540 (57%), Gaps = 12/540 (2%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +KD   WN+++  Y+      EA  +F    DN    +  S + +L A    G IEE   
Sbjct: 139 EKDVVSWNSLLSGYAQNGYVDEAREVF----DNMPEKNSISWNGLLAAYVHNGRIEEAC- 193

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
              LL +     DL   NCL+  +VR   L  AR LFDKM +RD++S+N+MI GY + G 
Sbjct: 194 ---LLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGG 250

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
           +  AR LFD  P R+  + +W ++++GY Q    L  A   F++MPE++ +S+N+M+ G 
Sbjct: 251 LSQARRLFDESPTRD--VFTWTAMVSGYVQ-NGMLDEAKTFFDEMPEKNEVSYNAMIAGY 307

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
           V+  KMD A+ LF+ MP R++ SW  MI GY ++G +  AR+ FD MP+RD V+  A++ 
Sbjct: 308 VQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIA 367

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           GY ++G+  +AL +F  ++ +     + A+    LS  A +  ++ G  IH    K  + 
Sbjct: 368 GYAQSGHYEEALNMFVEIKQDGE-SLNRATFGCALSTCADIAALELGKQIHGQAVKMGYG 426

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
                G AL+ MY KCGSI+ A   FE IE+  V  WN M+ G A HG G  A  +   M
Sbjct: 427 TGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESM 486

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500
           +   ++PD+IT  G+L+AC+H GL+  G   F  M + + + P  +HY CM+D+LGRAG 
Sbjct: 487 KTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGR 546

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560
           +E A++LI +MP +P    W  LL A R + N  +GE  A+ +  M+  NS  YVLLSN+
Sbjct: 547 LEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNL 606

Query: 561 FAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +A  G W DA ++RS M++  ++K+PG SW+E++  +H F V D S  +   IY  L+ +
Sbjct: 607 YAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEEL 666



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 143/424 (33%), Positives = 209/424 (49%), Gaps = 39/424 (9%)

Query: 121 SASLVLKACSRLGLIEEGLQIHGLLRKVAFG-----------SDLFLQNCLISLYVRCGY 169
           SA  V     R   +     I G LR   F             DLF  N +++ YVR   
Sbjct: 67  SALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCR 126

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA 229
           L  AR+LFD M  +D VS+NS++ GY ++G ++ ARE+FD+MP  E+N ISWN +L  Y 
Sbjct: 127 LGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP--EKNSISWNGLLAAYV 184

Query: 230 QLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMID 289
                ++ A  +FE   + DLISWN ++ G V+  K+ DA+ LFDKMP RD +SW  MI 
Sbjct: 185 H-NGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMIS 243

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
           GYA+ G +  ARRLFDE P RDV    AM+ GYV+NG   +A   FD M        ++ 
Sbjct: 244 GYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP-----EKNEV 298

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           S   +++   Q   +D    I R L +     N      +I  Y + G I  A K F+ +
Sbjct: 299 SYNAMIAGYVQTKKMD----IARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMM 354

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
                  W A+I G A  G  E A ++ +E+++     +  TF   L+ CA        +
Sbjct: 355 PQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCAD-------I 407

Query: 470 LCFELMRRIHKLEPELQH-YGCMVD-----ILGRAGHIEAARNLIEDMPMEPNDVI-WRT 522
              EL ++IH    ++ +  GC V      +  + G I+ A +  E   +E  DV+ W T
Sbjct: 408 AALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEG--IEEKDVVSWNT 465

Query: 523 LLSA 526
           +L+ 
Sbjct: 466 MLAG 469



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 183/349 (52%), Gaps = 34/349 (9%)

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFE 243
           D + +N  I  ++++G+ +SA  +F++MP   R+ +S+N++++GY +  S    A  +F+
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMP--RRSSVSYNAMISGYLR-NSKFNLARNLFD 104

Query: 244 KMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRL 303
           +MPERDL SWN ML G V+  ++ DA+ LFD MP++DVVSW +++ GYA+ G VD AR +
Sbjct: 105 QMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREV 164

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLV----IVLSAIA 359
           FD MP+++ ++ N ++  YV NG   +A        C L+    D  L+    ++   + 
Sbjct: 165 FDNMPEKNSISWNGLLAAYVHNGRIEEA--------CLLFESKSDWDLISWNCLMGGFVR 216

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
           +    D      +   +D  S N      +I  Y++ G +  A ++F++     V  W A
Sbjct: 217 KKKLGDARWLFDKMPVRDAISWN-----TMISGYAQGGGLSQARRLFDESPTRDVFTWTA 271

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           M++G   +G+ + A     EM     E +++++  ++     AG V+   +  ++ R + 
Sbjct: 272 MVSGYVQNGMLDEAKTFFDEMP----EKNEVSYNAMI-----AGYVQTKKM--DIARELF 320

Query: 480 KLEP--ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           +  P   +  +  M+   G+ G I  AR   + MP + + V W  +++ 
Sbjct: 321 ESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMP-QRDCVSWAAIIAG 368



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 176/373 (47%), Gaps = 62/373 (16%)

Query: 213 IRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQA 271
           +++ +++ WN  ++    +++G    A  +F  MP R  +S+N+M+ G ++  K + A+ 
Sbjct: 44  VKDPDILKWNKAIS--THMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARN 101

Query: 272 LFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKA 331
           LFD+MP+RD+ SW  M+ GY +  R+  ARRLFD MP++DVV+ N+++ GY +NGY  +A
Sbjct: 102 LFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEA 161

Query: 332 LEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALID 391
            E+FDNM                                    EK+  S NG     L+ 
Sbjct: 162 REVFDNMP-----------------------------------EKNSISWNG-----LLA 181

Query: 392 MYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA-IHGLGELAFDLLMEMERLSIEPDDI 450
            Y   G IE A  +FE   D  +  WN ++ G      LG    D     +++ +  D I
Sbjct: 182 AYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLG----DARWLFDKMPVR-DAI 236

Query: 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP--ELQHYGCMVDILGRAGHIEAARNLI 508
           ++  +++  A  G + +        RR+    P  ++  +  MV    + G ++ A+   
Sbjct: 237 SWNTMISGYAQGGGLSQA-------RRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFF 289

Query: 509 EDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWN 568
           ++MP E N+V +  +++     + +++   + +    M   N SS+  +   +  +G   
Sbjct: 290 DEMP-EKNEVSYNAMIAGYVQTKKMDIARELFE---SMPCRNISSWNTMITGYGQIGDIA 345

Query: 569 DARRVRSMMKERN 581
            AR+   MM +R+
Sbjct: 346 QARKFFDMMPQRD 358



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/412 (23%), Positives = 172/412 (41%), Gaps = 71/412 (17%)

Query: 20  LLRKCKTLND----VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF--- 72
           +L + KT  D     N++    +  G+++   +       F S PC  ++ +   I    
Sbjct: 281 MLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIAR-ELFESMPCRNISSWNTMITGYG 339

Query: 73  --------FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL 124
                    K+     ++D   W AII  Y+     +EAL MF  +  +G S+++ +   
Sbjct: 340 QIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGC 399

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
            L  C+ +  +E G QIHG   K+ +G+  F+ N L+++Y +CG ++ A   F+ +  +D
Sbjct: 400 ALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKD 459

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244
            VS+N+M+ GY + G    A  +F+SM                 A +K            
Sbjct: 460 VVSWNTMLAGYARHGFGRQALTVFESMKT---------------AGVKP----------- 493

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV-----SWANMIDGYAKLGRVDI 299
               D I+   +L  C   G +D     F  M K   V      +  MID   + GR++ 
Sbjct: 494 ----DEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEE 549

Query: 300 ARRLFDEMP-KRDVVACNAMMGGYVRNGYS---MKALEIFDNMQCELYLHPDDASLVIVL 355
           A+ L   MP +    +  A++G    +G +    KA E+   M+      P ++ + ++L
Sbjct: 550 AQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKME------PQNSGMYVLL 603

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKH-GVALIDMYSKCGSIENAIKVF 406
           S +          A  R+++ D+     +  GV  +  YS    ++N I  F
Sbjct: 604 SNLY--------AASGRWVDADKMRSKMRDIGVQKVPGYSWV-EVQNKIHTF 646


>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Vitis vinifera]
          Length = 550

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 221/607 (36%), Positives = 326/607 (53%), Gaps = 73/607 (12%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           S Q    L R C T+  + QIHA MI  GF  NT    +L+ + SS   +    +A  +F
Sbjct: 12  SRQQRSQLWRSCTTIGTLKQIHASMIVKGFNSNTSALRELIYA-SSIAISGTMAYAHQLF 70

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL 132
                   + D F+WN +I+  +    P  A+ ++  M +  V  DKF+   VLKAC+RL
Sbjct: 71  PHI----TEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRL 126

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
             +           K+ FG           ++ R   L F    F +         N++I
Sbjct: 127 CWV-----------KMGFG-----------VHGRVFRLGFESNTFVR---------NTLI 155

Query: 193 DGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLIS 252
             +   G++  AR LFD                 G A+                 RD+++
Sbjct: 156 YFHANCGDLAVARALFD-----------------GSAK-----------------RDVVA 181

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
           W+++  G  + G++  A+ LFD+MP +D+VSW  MI GYAK G ++ AR+LFDE+PKRDV
Sbjct: 182 WSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDV 241

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           V  NAM+ GYV  G + +ALE+F+ M+    L PD+ +++ +LSA   LG +D G  IH 
Sbjct: 242 VTWNAMIAGYVLCGSNQQALEMFEEMRSVGEL-PDEVTMLSLLSACTDLGDLDAGQRIHC 300

Query: 373 YLEKDQF-SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
            + +  F  L+   G ALIDMY+KCGSI  A++VF+ + +  V  WN+++ GLA HG  E
Sbjct: 301 CISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAE 360

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            +  L  EM +L I PD+ITF G+L AC+HAG V+EG   F+LMR  + +EP ++HYGCM
Sbjct: 361 KSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCM 420

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551
           VD+LGRAG +  A + I+ M +EPN ++WRTLL ACR + N+ +G      L+ M    S
Sbjct: 421 VDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDES 480

Query: 552 SSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG-VVHEFFVRDKSRLQV 610
             YVLLSN++A  G W+   +VR +M +  ++K  GCS IE +   +  F    K +L  
Sbjct: 481 GDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRKEAGCSLIEGDNKALMHFLFDSKPKLNS 540

Query: 611 RDIYYML 617
           R  +  L
Sbjct: 541 RKPFLEL 547


>gi|357126462|ref|XP_003564906.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 582

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 215/602 (35%), Positives = 325/602 (53%), Gaps = 44/602 (7%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           LR C + +   Q HA ++T+G +  + L    +   + +        A  +F +      
Sbjct: 16  LRACTSASHALQCHALLLTSGHLAASPLRLSNLLLLALAS-ASAVSHADAVFARLLPGPA 74

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
            +D F WN +I+ ++    P+ AL  F  M    V  D ++   VLKAC+  G++  GL 
Sbjct: 75  SRDAFPWNTLIRLHAPA-SPRNALAYFACMRRAAVEPDAYTFPAVLKACA-CGVL--GLP 130

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H    +     DLF +N L+S Y R                                G+
Sbjct: 131 VHAEAVRTGMDGDLFTRNALVSFYCRI-------------------------------GD 159

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
             S R++FD      R+L+SWNS++ GY      L+ A ++F+ MP RD  SW +M+   
Sbjct: 160 CRSGRKVFDH---GARDLVSWNSMVAGYVACGE-LELAQELFDGMPLRDAFSWATMIDAY 215

Query: 261 VK-CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM 319
            K  G +D A+ LFD+ P RD+V W +MIDGYA+ GR+D AR LF+EMP+R+V++ + ++
Sbjct: 216 GKRSGGVDRARELFDETPNRDLVCWCSMIDGYARQGRMDEARALFEEMPERNVISWSIVV 275

Query: 320 GGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
            GYVR G   +ALE+F  M +C +   PD  + V   +A AQLG +++G  +H YLEK +
Sbjct: 276 DGYVRCGEPSEALELFQRMLRCGI--KPDRVAAVGAFTACAQLGALEQGRWLHSYLEKKK 333

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
              +     ALIDMY KCG ++    +FE + D SV  WN MI GL  H  G  A  L  
Sbjct: 334 VLFDVVVQTALIDMYMKCGRLDLGKLIFESMPDKSVVTWNVMIIGLGTHSCGLHAVKLFY 393

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
           +ME      DD++   +L AC HAGL+ EGL  F  MR+   ++P+++HYG +VD+LGRA
Sbjct: 394 QMEAEGAPIDDLSVLAVLTACTHAGLISEGLGIFHRMRKDFGMDPKVEHYGALVDLLGRA 453

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           GH++ AR+ IE MPMEP   +W +LL+ACR++  + + E   + L  + + +   YVLLS
Sbjct: 454 GHLDHARHAIETMPMEPTPELWGSLLAACRSHRCVELAELSVERLASLGADDFGVYVLLS 513

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           N++A  GMW+   R+R +M    +KK  G S IE++G  HEF     S     +++ ML 
Sbjct: 514 NIYADEGMWDGVFRIRRLMSAEGMKKDIGRSVIEVDGQTHEFVNGGSSHSCKDEVHLMLQ 573

Query: 619 NM 620
           N+
Sbjct: 574 NL 575


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 191/520 (36%), Positives = 309/520 (59%), Gaps = 36/520 (6%)

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSV-SY 188
           S+ G I E  ++   +R+     D+     +IS Y++CG +E AR+LFD++  + +V ++
Sbjct: 78  SKDGRIMEARRLFDEMRE----PDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTW 133

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER 248
            +M+ GY++S  I  A +LF+ MP   +N++SWN++++GYAQ    +  A  +FEKMPER
Sbjct: 134 TAMVGGYIRSNKISDAEKLFNEMP--NKNVVSWNTMIDGYAQ-NGRIDSAMYLFEKMPER 190

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDG--------YAKLGRVDI- 299
           +++SWN+++    +CG++++A+ LFD+MP+RDV+SW  MI G        + ++   D+ 
Sbjct: 191 NVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLLDEALDLFERMPERDLP 250

Query: 300 -----------------ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
                            AR+LF+EMPK++V++   M+ G V+ G S +AL+IF  M    
Sbjct: 251 SWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTN 310

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENA 402
              P+  + V VL A + L  + +G  +H+ + K  +  +     ALI+MYSKCG +  A
Sbjct: 311 GAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTA 370

Query: 403 IKVFEQIEDGSVD--HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460
            K+F+       D   WN +I   A HG G+ A +   EM +   +PDD+T+ GLL+AC+
Sbjct: 371 RKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACS 430

Query: 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIW 520
           HAGLV+EGL  F+ + +   +     HY C+VD+ GRAG ++ A   IE +  +P+  +W
Sbjct: 431 HAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVW 490

Query: 521 RTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580
             LL+ C  + N+ +G+  AK L+ ++  N+ +Y+LLSN++A  G W +A RVR  MK++
Sbjct: 491 GALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDK 550

Query: 581 NLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            LKK PGCSWIE+   VH F V DKS  Q + IY +L ++
Sbjct: 551 GLKKQPGCSWIEVGNRVHVFVVGDKSHSQSKLIYSLLRDL 590



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 182/396 (45%), Gaps = 48/396 (12%)

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM-PKRDV 312
           N M+    K G++ +A+ LFD+M + DV++W  +I GY K G ++ ARRLFD +  K++V
Sbjct: 71  NWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNV 130

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           V   AM+GGY+R+     A ++F+ M      + +  S   ++   AQ G ID  + +  
Sbjct: 131 VTWTAMVGGYIRSNKISDAEKLFNEMP-----NKNVVSWNTMIDGYAQNGRIDSAMYLFE 185

Query: 373 YL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
            + E++  S N      ++ M ++CG IE A ++F+++ +  V  W AMI GL      +
Sbjct: 186 KMPERNVVSWN-----TVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLL-----D 235

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            A DL   M    +   +   TGL+      G ++     F  M + + +       GC+
Sbjct: 236 EALDLFERMPERDLPSWNTMITGLI----QNGDLRRARKLFNEMPKKNVISWTTMITGCV 291

Query: 492 VDILGRAGHIEAARNLIEDM----PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
                + G  E A  +   M      +PN   + ++L AC N   L  G+ V   +I   
Sbjct: 292 -----QEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQV-HQIISKT 345

Query: 548 SSNSSSYVL--LSNMFAGLGMWNDARRV--RSMMKERNLKKLPGCSWIELEGVVHEFFVR 603
               S++V+  L NM++  G    AR++    M  +R+L      SW    G++  +   
Sbjct: 346 VYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDL-----VSW---NGIIAAYAHH 397

Query: 604 DKSRLQVRDIYYMLDNMWTPDSVA-----TSCTHYG 634
              +  +     M  + + PD V      ++C+H G
Sbjct: 398 GYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAG 433



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 122/294 (41%), Gaps = 56/294 (19%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLD-NGVSVDKFSASLVLKACSRLGLIEEGL 139
           KK+   W  +I       + +EAL +F  ML  NG   ++ +   VL ACS L  + EG 
Sbjct: 277 KKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQ 336

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK--MGIRDSVSYNSMIDGYVK 197
           Q+H ++ K  +    F+ + LI++Y +CG L  AR++FD      RD VS+N +I  Y  
Sbjct: 337 QVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAH 396

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
            G  + A   F  M                    KSG +            D +++  +L
Sbjct: 397 HGYGKEAINFFKEMR-------------------KSGFK-----------PDDVTYVGLL 426

Query: 258 HGCVKCGKMDDAQALFDKMPK-RDVV----SWANMIDGYAKLGRVDIARRLFDEMPKRD- 311
             C   G +++    FD++ K R ++     +A ++D   + GR+  A    + +  +  
Sbjct: 427 SACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPS 486

Query: 312 -------VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
                  +  CN      +    + K LE+           P++A   ++LS I
Sbjct: 487 ARVWGALLAGCNVHANVKIGKQAAKKLLEV----------EPENAGTYLLLSNI 530



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 16/219 (7%)

Query: 3   VSANYNQPCNST-QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPC 61
           +S N  +P   T  S L        L +  Q+H  +  T +  +T + + L+  +S   C
Sbjct: 307 LSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSK--C 364

Query: 62  TPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFS 121
             L   AR +F        ++D   WN II  Y+H    KEA+  F  M  +G   D  +
Sbjct: 365 GELGT-ARKMF--DDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVT 421

Query: 122 ASLVLKACSRLGLIEEGLQIHGLL---RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD 178
              +L ACS  GL+EEGL+    L   R +    D +   CL+ L  R G L+ A    +
Sbjct: 422 YVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYA--CLVDLCGRAGRLKEAFGFIE 479

Query: 179 KMGIRDSVS-YNSMIDGYVKSGNI----ESARELFDSMP 212
           ++  + S   + +++ G     N+    ++A++L +  P
Sbjct: 480 RLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEP 518


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 203/540 (37%), Positives = 309/540 (57%), Gaps = 12/540 (2%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +KD   WN+++  Y+      EA  +F    DN    +  S + +L A    G IEE   
Sbjct: 139 EKDVVSWNSLLSGYAQNGYVDEAREVF----DNMPEKNSISWNGLLAAYVHNGRIEEAC- 193

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
              LL +     DL   NCL+  +VR   L  AR LFDKM +RD++S+N+MI GY + G 
Sbjct: 194 ---LLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGG 250

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
           +  AR LFD  P R+  + +W ++++GY Q    L  A   F++MPE++ +S+N+M+ G 
Sbjct: 251 LSQARRLFDESPTRD--VFTWTAMVSGYVQ-NGMLDEAKTFFDEMPEKNEVSYNAMIAGY 307

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
           V+  KMD A+ LF+ MP R++ SW  MI GY ++G +  AR+ FD MP+RD V+  A++ 
Sbjct: 308 VQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIA 367

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           GY ++G+  +AL +F  ++ +     + A+    LS  A +  ++ G  IH    K  + 
Sbjct: 368 GYAQSGHYEEALNMFVEIKQDGE-SLNRATFGCALSTCADIAALELGKQIHGQAVKMGYG 426

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
                G AL+ MY KCGSI+ A   FE IE+  V  WN M+ G A HG G  A  +   M
Sbjct: 427 TGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESM 486

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500
           +   ++PD+IT  G+L+AC+H GL+  G   F  M + + + P  +HY CM+D+LGRAG 
Sbjct: 487 KTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGR 546

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560
           +E A++LI +MP +P    W  LL A R + N  +GE  A+ +  M+  NS  YVLLSN+
Sbjct: 547 LEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNL 606

Query: 561 FAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +A  G W DA ++RS M++  ++K+PG SW+E++  +H F V D S  +   IY  L+ +
Sbjct: 607 YAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEEL 666



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 143/424 (33%), Positives = 209/424 (49%), Gaps = 39/424 (9%)

Query: 121 SASLVLKACSRLGLIEEGLQIHGLLRKVAFG-----------SDLFLQNCLISLYVRCGY 169
           SA  V     R   +     I G LR   F             DLF  N +++ YVR   
Sbjct: 67  SALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCR 126

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA 229
           L  AR+LFD M  +D VS+NS++ GY ++G ++ ARE+FD+MP  E+N ISWN +L  Y 
Sbjct: 127 LGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP--EKNSISWNGLLAAYV 184

Query: 230 QLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMID 289
                ++ A  +FE   + DLISWN ++ G V+  K+ DA+ LFDKMP RD +SW  MI 
Sbjct: 185 H-NGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMIS 243

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
           GYA+ G +  ARRLFDE P RDV    AM+ GYV+NG   +A   FD M        ++ 
Sbjct: 244 GYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP-----EKNEV 298

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           S   +++   Q   +D    I R L +     N      +I  Y + G I  A K F+ +
Sbjct: 299 SYNAMIAGYVQTKKMD----IARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMM 354

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
                  W A+I G A  G  E A ++ +E+++     +  TF   L+ CA        +
Sbjct: 355 PQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCAD-------I 407

Query: 470 LCFELMRRIHKLEPELQH-YGCMVD-----ILGRAGHIEAARNLIEDMPMEPNDVI-WRT 522
              EL ++IH    ++ +  GC V      +  + G I+ A +  E   +E  DV+ W T
Sbjct: 408 AALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEG--IEEKDVVSWNT 465

Query: 523 LLSA 526
           +L+ 
Sbjct: 466 MLAG 469



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 183/349 (52%), Gaps = 34/349 (9%)

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFE 243
           D + +N  I  ++++G+ +SA  +F++MP   R+ +S+N++++GY +  S    A  +F+
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMP--RRSSVSYNAMISGYLR-NSKFNLARNLFD 104

Query: 244 KMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRL 303
           +MPERDL SWN ML G V+  ++ DA+ LFD MP++DVVSW +++ GYA+ G VD AR +
Sbjct: 105 QMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREV 164

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLV----IVLSAIA 359
           FD MP+++ ++ N ++  YV NG   +A        C L+    D  L+    ++   + 
Sbjct: 165 FDNMPEKNSISWNGLLAAYVHNGRIEEA--------CLLFESKSDWDLISWNCLMGGFVR 216

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
           +    D      +   +D  S N      +I  Y++ G +  A ++F++     V  W A
Sbjct: 217 KKKLGDARWLFDKMPVRDAISWN-----TMISGYAQGGGLSQARRLFDESPTRDVFTWTA 271

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           M++G   +G+ + A     EM     E +++++  ++     AG V+   +  ++ R + 
Sbjct: 272 MVSGYVQNGMLDEAKTFFDEMP----EKNEVSYNAMI-----AGYVQTKKM--DIARELF 320

Query: 480 KLEP--ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           +  P   +  +  M+   G+ G I  AR   + MP + + V W  +++ 
Sbjct: 321 ESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMP-QRDCVSWAAIIAG 368



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 176/373 (47%), Gaps = 62/373 (16%)

Query: 213 IRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQA 271
           +++ +++ WN  ++    +++G    A  +F  MP R  +S+N+M+ G ++  K + A+ 
Sbjct: 44  VKDPDILKWNKAIS--THMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARN 101

Query: 272 LFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKA 331
           LFD+MP+RD+ SW  M+ GY +  R+  ARRLFD MP++DVV+ N+++ GY +NGY  +A
Sbjct: 102 LFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEA 161

Query: 332 LEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALID 391
            E+FDNM                                    EK+  S NG     L+ 
Sbjct: 162 REVFDNMP-----------------------------------EKNSISWNG-----LLA 181

Query: 392 MYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA-IHGLGELAFDLLMEMERLSIEPDDI 450
            Y   G IE A  +FE   D  +  WN ++ G      LG    D     +++ +  D I
Sbjct: 182 AYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLG----DARWLFDKMPVR-DAI 236

Query: 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP--ELQHYGCMVDILGRAGHIEAARNLI 508
           ++  +++  A  G + +        RR+    P  ++  +  MV    + G ++ A+   
Sbjct: 237 SWNTMISGYAQGGGLSQA-------RRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFF 289

Query: 509 EDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWN 568
           ++MP E N+V +  +++     + +++   + +    M   N SS+  +   +  +G   
Sbjct: 290 DEMP-EKNEVSYNAMIAGYVQTKKMDIARELFE---SMPCRNISSWNTMITGYGQIGDIA 345

Query: 569 DARRVRSMMKERN 581
            AR+   MM +R+
Sbjct: 346 QARKFFDMMPQRD 358



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/412 (23%), Positives = 172/412 (41%), Gaps = 71/412 (17%)

Query: 20  LLRKCKTLND----VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF--- 72
           +L + KT  D     N++    +  G+++   +       F S PC  ++ +   I    
Sbjct: 281 MLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIAR-ELFESMPCRNISSWNTMITGYG 339

Query: 73  --------FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL 124
                    K+     ++D   W AII  Y+     +EAL MF  +  +G S+++ +   
Sbjct: 340 QIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGC 399

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
            L  C+ +  +E G QIHG   K+ +G+  F+ N L+++Y +CG ++ A   F+ +  +D
Sbjct: 400 ALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKD 459

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244
            VS+N+M+ GY + G    A  +F+SM                 A +K            
Sbjct: 460 VVSWNTMLAGYARHGFGRQALTVFESMKT---------------AGVKP----------- 493

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV-----SWANMIDGYAKLGRVDI 299
               D I+   +L  C   G +D     F  M K   V      +  MID   + GR++ 
Sbjct: 494 ----DEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEE 549

Query: 300 ARRLFDEMP-KRDVVACNAMMGGYVRNGYS---MKALEIFDNMQCELYLHPDDASLVIVL 355
           A+ L   MP +    +  A++G    +G +    KA E+   M+      P ++ + ++L
Sbjct: 550 AQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKME------PQNSGMYVLL 603

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKH-GVALIDMYSKCGSIENAIKVF 406
           S +          A  R+++ D+     +  GV  +  YS    ++N I  F
Sbjct: 604 SNLY--------AASGRWVDADKMRSKMRDIGVQKVPGYSWV-EVQNKIHTF 646


>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
          Length = 567

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 189/515 (36%), Positives = 307/515 (59%), Gaps = 11/515 (2%)

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL-GLIE 136
           F      FL   +I+  +    P  +   F  +L  G+  D+F+   +L +  +L     
Sbjct: 53  FPSSSATFLQKILIRASASSASPGLSFAAFSSLLRCGLVPDRFTLPPLLGSAGKLPAFPR 112

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK-MGIRDSVSYNSMIDGY 195
            G Q+H    +  F +D+F+ N L+++Y         R++F    G+ D VS+N++I GY
Sbjct: 113 TGAQVHAQAVRRGFLADVFVVNALLAMYGALRDAASMREVFGSCAGVADVVSWNTVIGGY 172

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE--RDLISW 253
           VK G +ESA+ +FD MP   RN +SW++++ GYA     L  A ++F++MP   R++++W
Sbjct: 173 VKCGEMESAKRVFDEMP--RRNGVSWSTMVGGYAAAGE-LDVAREMFDRMPAIGRNVVTW 229

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
           NSM+ G  + G +  A+ +FD+MP R++VSW  M+ GY+    +D AR LFD MP++DVV
Sbjct: 230 NSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVV 289

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
           +   M+ GY + G     LE+F  MQ E  + P++ ++V VLSA A L  +++G  +H +
Sbjct: 290 SWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAF 349

Query: 374 LEKDQFSLNGKH--GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
           ++K +  LN ++  G ALIDMY+KCG  + A+K+F  ++  +V  WNA+I  LA++G   
Sbjct: 350 IDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAR 409

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            + D   +M+R   +P+DITF G+L AC+H GLV EG  CF+ M     ++PE++HYGCM
Sbjct: 410 DSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCM 469

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK--HLIGMDSS 549
           VD+LGRAG +E A  LI  MPM P+ +++  LL ACR ++  +V E V    H + +++ 
Sbjct: 470 VDMLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQ 529

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKK 584
            S  +VL+S+++A  G W D    R +++   ++K
Sbjct: 530 QSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRK 564



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 136/498 (27%), Positives = 225/498 (45%), Gaps = 75/498 (15%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFA--RYIFFKYHAFREKKDPFLWNA 89
           Q+HA+ +  GF+ +  +   L+A + +     L + A  R +F          D   WN 
Sbjct: 116 QVHAQAVRRGFLADVFVVNALLAMYGA-----LRDAASMREVFGSCAGV---ADVVSWNT 167

Query: 90  IIKTYSHGLDPKEALVMFCLM-LDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKV 148
           +I  Y    + + A  +F  M   NGVS           A   L +  E        R  
Sbjct: 168 VIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYA--AAGELDVAREMFD-----RMP 220

Query: 149 AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELF 208
           A G ++   N +++ + R G L  AR++FD+M +R+ VS+N+M+ GY  + +++ ARELF
Sbjct: 221 AIGRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELF 280

Query: 209 DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN-----SMLHGCVKC 263
           D MP  E++++SW  +++GYAQ     Q   ++F  M     +  N     S+L  C   
Sbjct: 281 DVMP--EKDVVSWTCMISGYAQ-AGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANL 337

Query: 264 GKMDDAQALFDKMPKRDVV------SWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNA 317
             +++ + +   + K  +V        A +ID YAK GR DIA ++F+ + +++V A NA
Sbjct: 338 TALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNA 397

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           ++     NG +  +++ F+ M+      P+D + V VL+A +  G +D+G    R  +  
Sbjct: 398 LITRLAMNGNARDSVDAFEQMK-RTGEKPNDITFVGVLTACSHGGLVDEG---RRCFQ-- 451

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLL 437
                         M S CG          Q E   V H+  M++ L   GL E A +L+
Sbjct: 452 -------------SMASTCGV---------QPE---VKHYGCMVDMLGRAGLLEEAEELI 486

Query: 438 MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV---DI 494
             M    + PD + F  LL AC    + K   +   +   IH L    Q  GC V   DI
Sbjct: 487 RSMP---MAPDVMVFGALLGACR---MHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDI 540

Query: 495 LGRAGH---IEAARNLIE 509
              AG    +  AR +++
Sbjct: 541 YAAAGKWFDVLEARQVVQ 558


>gi|334186821|ref|NP_194007.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635615|sp|P0C8Q5.1|PP336_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g22760
 gi|332659255|gb|AEE84655.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 578

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 198/578 (34%), Positives = 319/578 (55%), Gaps = 15/578 (2%)

Query: 19  LLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVAS---FSSSPCTPLTEFARYIFFKY 75
             L++C  L    Q+HA+++   +    HL   LV     F+      +  + + I   +
Sbjct: 8   FFLQRCVVLEQAKQVHAQLVVNRY---NHLEPILVHQTLHFTKEFSRNIVTYVKRILKGF 64

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
           +      D F W  +++  S     KE + ++  M ++G+     + + VL+AC ++  +
Sbjct: 65  NG----HDSFSWGCLVRFLSQHRKFKETVDVYIDMHNSGIPPSSHAVTSVLRACGKMENM 120

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
            +G  IH    K      +++Q  L+ LY R GY+E A++ FD +  +++VS+NS++ GY
Sbjct: 121 VDGKPIHAQALKNGLCGCVYVQTGLVGLYSRLGYIELAKKAFDDIAEKNTVSWNSLLHGY 180

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
           ++SG ++ AR +FD +P  E++ +SWN +++ YA+ K  +  A  +F  MP +   SWN 
Sbjct: 181 LESGELDEARRVFDKIP--EKDAVSWNLIISSYAK-KGDMGNACSLFSAMPLKSPASWNI 237

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           ++ G V C +M  A+  FD MP+++ VSW  MI GY KLG V  A  LF  M K+D +  
Sbjct: 238 LIGGYVNCREMKLARTYFDAMPQKNGVSWITMISGYTKLGDVQSAEELFRLMSKKDKLVY 297

Query: 316 NAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
           +AM+  Y +NG    AL++F  M +   Y+ PD+ +L  V+SA +QLG+   G  +  Y+
Sbjct: 298 DAMIACYTQNGKPKDALKLFAQMLERNSYIQPDEITLSSVVSANSQLGNTSFGTWVESYI 357

Query: 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
            +    ++     +LID+Y K G    A K+F  +       ++AMI G  I+G+   A 
Sbjct: 358 TEHGIKIDDLLSTSLIDLYMKGGDFAKAFKMFSNLNKKDTVSYSAMIMGCGINGMATEAN 417

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
            L   M    I P+ +TFTGLL+A +H+GLV+EG  CF  M+  H LEP   HYG MVD+
Sbjct: 418 SLFTAMIEKKIPPNVVTFTGLLSAYSHSGLVQEGYKCFNSMKD-HNLEPSADHYGIMVDM 476

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           LGRAG +E A  LI+ MPM+PN  +W  LL A   + N+  GE    H + +++  +   
Sbjct: 477 LGRAGRLEEAYELIKSMPMQPNAGVWGALLLASGLHNNVEFGEIACSHCVKLETDPTGYL 536

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
             L+ +++ +G W+DAR VR  +KE+ L K  GCSW+E
Sbjct: 537 SHLAMIYSSVGRWDDARTVRDSIKEKKLCKTLGCSWVE 574


>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
 gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 204/607 (33%), Positives = 336/607 (55%), Gaps = 46/607 (7%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPL--TEFARYIFFKY 75
           L LL++C+T   + QIHA ++      N ++ TK + +     C  L  T  AR++F   
Sbjct: 6   LFLLQRCRTRKTLLQIHALILRNAIDANVNILTKFITT-----CGQLSSTRHARHLFDNR 60

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFC-LMLDNGVSVDKFSASLVLKACSRLGL 134
                + D FL N++IK++       +A  ++  L  +     D F+ +++ K C+    
Sbjct: 61  S---HRGDTFLCNSMIKSHVVMRQLADAFTLYKDLRRETCFVPDNFTFTVLAKCCALRMA 117

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           + EGL+ HG + K+ F  D+++   L+                               D 
Sbjct: 118 VWEGLETHGHVVKIGFCFDMYVSTALV-------------------------------DM 146

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN 254
           Y K GN+  AR++F+ MP  +R+L+SW +++ GY + +  +  AW +F+ MP RD  ++N
Sbjct: 147 YAKFGNLGLARKVFNDMP--DRSLVSWTALIGGYVR-RGDMGNAWFLFKLMPGRDSAAFN 203

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
            ++ G VK G M+ A++LFD+MP+R+V+SW +MI GY   G V  AR LFD MP++++V+
Sbjct: 204 LLIDGYVKVGDMESARSLFDEMPERNVISWTSMIYGYCNNGDVLSARFLFDAMPEKNLVS 263

Query: 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
            NAM+GGY +N    +AL++F  +Q      P++ ++V +L AIA LG ++ G  +HR++
Sbjct: 264 WNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVSILPAIATLGALELGEWVHRFV 323

Query: 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
           ++ +         +L+DMY KCG I  A KVF +I       WNA+ING A++GL   A 
Sbjct: 324 QRKKLDAAVNVCTSLVDMYLKCGEISKARKVFSEIPKKETATWNALINGFAMNGLASEAL 383

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
           +   EM++  I+P+DIT TG+L+AC+H GLV+EG   F+ M     L P+++HYGC+VD+
Sbjct: 384 EAFSEMQQEGIKPNDITMTGVLSACSHGGLVEEGKGQFKAMIE-SGLSPKIEHYGCLVDL 442

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           LGRAG ++ A NLI+ MP E N +I  +   AC    ++   + V    + M+  N+  Y
Sbjct: 443 LGRAGCLDEAENLIKSMPFEANGIILSSFSFACGFSNDVTRAQRVLNQAVNMEPGNNGIY 502

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           V++ N++A    W D + +  +M+ R  KK  G S IE++  V EF     +  Q+  I 
Sbjct: 503 VMMRNLYAMEERWKDVKEINGLMRRRGAKKEVGSSAIEVDSRVSEFISGGIAHPQLDVIE 562

Query: 615 YMLDNMW 621
            ++  +W
Sbjct: 563 SVIGQLW 569


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 223/634 (35%), Positives = 346/634 (54%), Gaps = 43/634 (6%)

Query: 23  KCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF---------- 72
           K K++ +   +HAR+I T F     +  +LV  +    C  L E AR +F          
Sbjct: 31  KSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGK--CGFL-EDARKVFDHMQQRNTFS 87

Query: 73  --------FKYHAFRE---------KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGV 115
                    K+ A  E         ++D   WNA++  ++     +EAL     M     
Sbjct: 88  WNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDF 147

Query: 116 SVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQ 175
            ++++S    L AC+ L  +  G+QIHGL+ K  +  D+++ + L+ +Y +C  +  A++
Sbjct: 148 VLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQR 207

Query: 176 LFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM-----PIRERNLISWNSVLNGYAQ 230
            FD M +R+ VS+NS+I  Y ++G    A E+F  M        E  L S  S     + 
Sbjct: 208 AFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSA 267

Query: 231 LKSGLQFAWQIFEKMPER-DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMID 289
           ++ GLQ   ++ +    R DL+  N+++    KC ++++A+ +FD+MP RDVVS  +M+ 
Sbjct: 268 IREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVS 327

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
           GYAK   V  AR +F  M +R+VV+ NA++ GY +NG + +A+ +F  ++ E  + P   
Sbjct: 328 GYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRE-SIWPTHY 386

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH------GVALIDMYSKCGSIENAI 403
           +   +L+A A L  +  G   H ++ K  F            G +LIDMY KCG +E+  
Sbjct: 387 TFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGR 446

Query: 404 KVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAG 463
            VFE++ +     WNAMI G A +G G  A ++  EM      PD +T  G+L+AC+HAG
Sbjct: 447 LVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAG 506

Query: 464 LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTL 523
           LV+EG   F+ M   H L P   HY CMVD+LGRAG ++ A NLI+ MPMEP+ V+W +L
Sbjct: 507 LVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSL 566

Query: 524 LSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583
           L+AC+ + N+ +G+ VA+ L+ +D  NS  YVLLSNM+A LG W D  RVR  M++  + 
Sbjct: 567 LAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVI 626

Query: 584 KLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           K PGCSWI ++  +H F V+DK     +DIY +L
Sbjct: 627 KQPGCSWISIQSHLHVFMVKDKRHPHKKDIYLIL 660



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 130/452 (28%), Positives = 221/452 (48%), Gaps = 64/452 (14%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +L  C +   + E   +H  + K  F S++F+QN L+ +Y +CG+LE AR++FD M  R+
Sbjct: 25  LLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRN 84

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244
           + S+N+++    K G ++ A  LF  MP  ER+  SWN++++G+AQ +   + A +    
Sbjct: 85  TFSWNAVLGALTKFGALDEALNLFKCMP--ERDQCSWNAMVSGFAQ-RDRFEEALRFVVD 141

Query: 245 MPERDLI----SWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGR 296
           M   D +    S+ S L  C     +     +   + K     DV   + ++D Y+K   
Sbjct: 142 MHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRV 201

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           V  A+R FD+M  R++V+ N+++  Y +NG + KALE+F  M     + PD+ +L  V S
Sbjct: 202 VASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMM-NCGIEPDEITLASVAS 260

Query: 357 AIAQLGHIDKGVAIH-RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE----- 410
           A A L  I +G+ IH R ++ D++  +   G AL+DMY+KC  +  A  VF+++      
Sbjct: 261 ACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVV 320

Query: 411 --------------------------DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS 444
                                     + +V  WNA+I G   +G  E A  L + ++R S
Sbjct: 321 SETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRES 380

Query: 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK------------LEPELQHYGCMV 492
           I P   TF  LLNACA+   +K G       R+ H              + ++     ++
Sbjct: 381 IWPTHYTFGNLLNACANLADLKLG-------RQAHTHILKHGFWFKSGEDSDIFVGNSLI 433

Query: 493 DILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
           D+  + G +E  R + E M +E ++V W  ++
Sbjct: 434 DMYMKCGLVEDGRLVFERM-LERDNVSWNAMI 464


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 212/588 (36%), Positives = 324/588 (55%), Gaps = 44/588 (7%)

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL 132
           F+ +  + ++ P L  AI+K         EA+     +   G+ +D  + + +L+ C+  
Sbjct: 14  FRTNPRKPRRRPCLVEAIVKLCKKN-KLNEAVSSLENLARRGLRLDSRTLASLLQHCADS 72

Query: 133 GLIEEGLQIHGLLRKVAFG-SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
             + EG ++H  L+         FL N LI++Y +CG    AR++FDKM  R+  S+N+M
Sbjct: 73  RALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNM 132

Query: 192 IDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK------------------- 232
           + GY K G I+ AR+LFD MP  E++++SWN+++  +AQ                     
Sbjct: 133 LSGYAKLGMIKPARKLFDKMP--EKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQC 190

Query: 233 SGLQFA--WQIFEKMPE-----------------RDLISWNSMLHGCVKCGKMDDAQALF 273
           +G  FA    +  K+ E                  +++  +S+L   VKCG M DA+ LF
Sbjct: 191 NGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLF 250

Query: 274 DKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE 333
           D+M  RDV++W  M+ GYAK G +  A  LF EMP+++ V+  A++ GY RNG   KALE
Sbjct: 251 DEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALE 310

Query: 334 IFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMY 393
           +F  M    ++ PD  +    L A A +  +  G  IH YL +  F  N     ALIDMY
Sbjct: 311 LFTKMML-FHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMY 369

Query: 394 SKCGSIENAIKVFEQIEDG-SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITF 452
           SKCGS+    KVF+ + +   V  WN +I+ LA HG GE A  +L +M R   +PD ITF
Sbjct: 370 SKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITF 429

Query: 453 TGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP 512
             +LNAC+H+GLV++GL  FE M   + + P  +HY C++D+LGRAG  E   + +E MP
Sbjct: 430 VVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMP 489

Query: 513 MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARR 572
            +P+D +W  LL  CR + ++ +G   A+ LI ++  +S++YVLLS+++A LG W   ++
Sbjct: 490 YKPDDRVWNALLGVCRIHGHIELGRKAAERLIELEPQSSTAYVLLSSIYAVLGRWESVQK 549

Query: 573 VRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           VR +M ER +KK    SW+E+E  VH F V D S      IY +L+ +
Sbjct: 550 VRQLMNERQVKKERAISWLEIENKVHSFSVSDSSHPLKEQIYSVLEQL 597



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 156/341 (45%), Gaps = 46/341 (13%)

Query: 11  CN--STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSS---------- 58
           CN  S    L +  K K +    Q+H +++  GF+ N  L++ ++ ++            
Sbjct: 190 CNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKL 249

Query: 59  ----------SPCTPLTEFARYIFFKY--HAFRE--KKDPFLWNAIIKTYSHGLDPKEAL 104
                     +  T ++ +A++   K     F E  +K+P  W A+I  Y+      +AL
Sbjct: 250 FDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKAL 309

Query: 105 VMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLY 164
            +F  M+   V  D+F+ S  L AC+ +  ++ G QIH  L ++ F  +  + + LI +Y
Sbjct: 310 ELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMY 369

Query: 165 VRCGYLEFARQLFDKMGIR-DSVSYNSMIDGYVKSGNIESARELFDSMPIR---ERNLIS 220
            +CG L   R++FD MG + D V +N++I    + G  E A ++ D M +R   + + I+
Sbjct: 370 SKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDM-VRSGAKPDKIT 428

Query: 221 WNSVLNGYAQLKSGL-QFAWQIFEKMPERDLISWNSMLHGCV-----KCGKMDDAQALFD 274
           +  +LN  +   SGL Q     FE M     I  +   + C+     + G  ++     +
Sbjct: 429 FVVILNACSH--SGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLE 486

Query: 275 KMP-KRDVVSWANM-----IDGYAKLGRVDIARRLFDEMPK 309
           KMP K D   W  +     I G+ +LGR   A RL +  P+
Sbjct: 487 KMPYKPDDRVWNALLGVCRIHGHIELGR-KAAERLIELEPQ 526


>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 613

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 208/603 (34%), Positives = 333/603 (55%), Gaps = 26/603 (4%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           L  +C +   + Q+HAR +  G  +++ +  KLV +F+      L         + H+  
Sbjct: 20  LAARCASARQLEQLHARAVLLGHARSSFVAAKLVRAFAD--LGHLRAARAVAAVRAHS-- 75

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDN--GVSVDKFSASLVLKACSRLGLIEE 137
                                ++A+ ++  M     GV    F+ S VLKA +R  ++ E
Sbjct: 76  -------------QSGSSAAARDAVALYAQMHRGCPGVRPLTFTVSSVLKAAARREMLRE 122

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G Q+H  + K  F +D  +   L+ LY RCG L+ AR++FD++ ++D+  YN+MI  Y++
Sbjct: 123 GEQVHVHVFKNGFQTDERIATTLVDLYARCGRLDDARRVFDRLLVKDAQLYNTMIAAYME 182

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER-DLISWNSM 256
           +G +E A ELF+ MP  ERN  +   ++ GY+  +  +  A  +FE      +++   +M
Sbjct: 183 AGEVELAEELFEVMP--ERNTHTLMEMVGGYSA-RGDMDSAKHVFEMANGVVNMVLCTAM 239

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDG-YAKLGRVDIARRLFDEMPKRDVVAC 315
           + G  K G +DDA+++FD M +RDV +W  MI   YAK G V+ AR++FD MP+R+VV  
Sbjct: 240 ISGFAKTGSVDDARSVFDGMRQRDVATWNVMIGVMYAKCGLVEDARKVFDAMPERNVVCW 299

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
            +M+ GY + G   +A+++F +MQ    +  DDA++  V+S+  Q+G +D G  +H Y +
Sbjct: 300 TSMISGYTQVGKFKQAVKLFRDMQIS-GVKADDATIATVVSSCGQMGALDLGRYVHAYCD 358

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
                       +LIDMYSKCG I+ A ++F  +       W  MI G A++GL   A D
Sbjct: 359 VHGLGKGISVKNSLIDMYSKCGDIKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALD 418

Query: 436 LLMEMERLS-IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
           L  +ME    + P++ITF G+L +C+H GLV++G   F  M +++ + P ++HYGCMVD+
Sbjct: 419 LFAQMEEEGEVMPNEITFLGVLTSCSHGGLVEQGYHHFHRMSKVYGIAPRIEHYGCMVDL 478

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           LGRA  +  A   IE+MP+ P+  IWR+LL ACR    + + E VA+ +  ++ S     
Sbjct: 479 LGRAKLLAEAEQFIEEMPIAPDVAIWRSLLFACRARGEVGLAEYVAERVEELEPSRCGGN 538

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           VLLSN++A    W D  +VR+ M    + K PGCS IE+ G  HEF   D++ L+   IY
Sbjct: 539 VLLSNVYATTSRWVDVNKVRTGMGRSRVSKRPGCSVIEVNGCAHEFLSGDETHLETEAIY 598

Query: 615 YML 617
            +L
Sbjct: 599 NIL 601



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 123/486 (25%), Positives = 225/486 (46%), Gaps = 65/486 (13%)

Query: 9   QPCNSTQSTLL-LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF 67
           +P   T S++L    + + L +  Q+H  +   GF  +  + T LV  ++   C  L + 
Sbjct: 101 RPLTFTVSSVLKAAARREMLREGEQVHVHVFKNGFQTDERIATTLVDLYAR--CGRLDD- 157

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           AR +F +       KD  L+N +I  Y    + + A  +F +M +     +  +   ++ 
Sbjct: 158 ARRVFDRLLV----KDAQLYNTMIAAYMEAGEVELAEELFEVMPER----NTHTLMEMVG 209

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
             S  G ++    +  +   V    ++ L   +IS + + G ++ AR +FD M  RD  +
Sbjct: 210 GYSARGDMDSAKHVFEMANGVV---NMVLCTAMISGFAKTGSVDDARSVFDGMRQRDVAT 266

Query: 188 YNSMIDG-YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP 246
           +N MI   Y K G +E AR++FD+MP  ERN++ W S+++GY Q+    Q A ++F  M 
Sbjct: 267 WNVMIGVMYAKCGLVEDARKVFDAMP--ERNVVCWTSMISGYTQVGKFKQ-AVKLFRDMQ 323

Query: 247 ----ERDLISWNSMLHGCVKCGKMDDAQ---ALFDKMPKRDVVSWAN-MIDGYAKLGRVD 298
               + D  +  +++  C + G +D  +   A  D       +S  N +ID Y+K G + 
Sbjct: 324 ISGVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGKGISVKNSLIDMYSKCGDIK 383

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
            A  +F  + KRD  +   M+ G+  NG S +AL++F  M+ E  + P++ + + VL++ 
Sbjct: 384 KAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQMEEEGEVMPNEITFLGVLTSC 443

Query: 359 AQLGHIDKGV-AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
           +  G +++G    HR        ++  +G+A                         ++H+
Sbjct: 444 SHGGLVEQGYHHFHR--------MSKVYGIA-----------------------PRIEHY 472

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
             M++ L   G  +L  +    +E + I PD   +  LL AC   G V  GL  + +  R
Sbjct: 473 GCMVDLL---GRAKLLAEAEQFIEEMPIAPDVAIWRSLLFACRARGEV--GLAEY-VAER 526

Query: 478 IHKLEP 483
           + +LEP
Sbjct: 527 VEELEP 532


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 210/570 (36%), Positives = 322/570 (56%), Gaps = 45/570 (7%)

Query: 65  TEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL 124
           T + R++F +     ++ + FLWN +I+         +A+  + LM   G   + F+   
Sbjct: 62  TNYTRFLFHQI----KQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPF 117

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           VLKAC+RL  ++ G++IH L+ K  F  D+F++  L+ LY +CGYLE A ++FD +  ++
Sbjct: 118 VLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKN 177

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNL----ISWNSVLNGYAQ---LKSGLQF 237
            VS+ ++I GY+  G    A ++F  +   E NL     +   VL+   Q   L SG   
Sbjct: 178 VVSWTAIISGYIGVGKFREAIDMFRRL--LEMNLAPDSFTIVRVLSACTQLGDLNSGEWI 235

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
              I E    R++    S++    KCG M+ A+++FD MP++D+VSW  MI GYA     
Sbjct: 236 HKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYA----- 290

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
                                      NG   +A+++F  MQ E  + PD  ++V VLSA
Sbjct: 291 --------------------------LNGLPKEAIDLFLQMQRE-NVKPDCYTVVGVLSA 323

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
            A+LG ++ G  +   +++++F  N   G ALID+Y+KCGS+  A +VF+ +++     W
Sbjct: 324 CARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVW 383

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
           NA+I+GLA++G  +++F L  ++E+L I+PD  TF GLL  C HAGLV EG   F  M R
Sbjct: 384 NAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYR 443

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
              L P ++HYGCMVD+LGRAG ++ A  LI +MPME N ++W  LL ACR + +  + E
Sbjct: 444 FFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAE 503

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVV 597
              K LI ++  NS +YVLLSN+++    W++A +VR  M E+ ++K PGCSWIE++G+V
Sbjct: 504 LALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIV 563

Query: 598 HEFFVRDKSRLQVRDIYYMLDNMWTPDSVA 627
           HEF V DK       IY  LD +     VA
Sbjct: 564 HEFLVGDKYHPLSEKIYAKLDELTKKMKVA 593



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 139/311 (44%), Gaps = 46/311 (14%)

Query: 20  LLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L  C  L D+N    IH  ++  G ++N  + T LV  ++   C  + E AR +F    
Sbjct: 219 VLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAK--CGNM-EKARSVFDGM- 274

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
               +KD   W A+I+ Y+    PKEA+ +F  M    V  D ++   VL AC+RLG +E
Sbjct: 275 ---PEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALE 331

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G  + GL+ +  F  +  L   LI LY +CG +  A ++F  M  +D V +N++I G  
Sbjct: 332 LGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGL- 390

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
                                       +NGY ++  GL    +     P+ +  ++  +
Sbjct: 391 ---------------------------AMNGYVKISFGLFGQVEKLGIKPDGN--TFIGL 421

Query: 257 LHGCVKCGKMDDAQALFDKMPK-----RDVVSWANMIDGYAKLGRVDIARRLFDEMP-KR 310
           L GC   G +D+ +  F+ M +       +  +  M+D   + G +D A +L   MP + 
Sbjct: 422 LCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEA 481

Query: 311 DVVACNAMMGG 321
           + +   A++G 
Sbjct: 482 NAIVWGALLGA 492


>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
          Length = 688

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 213/613 (34%), Positives = 348/613 (56%), Gaps = 63/613 (10%)

Query: 12  NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
           N +     L  KC ++  +  +HA++I  G    T    KL+ SF +       ++A+ +
Sbjct: 112 NGSHCPARLCEKCSSMRGLKLLHAQIILHGLTNETLTLGKLI-SFCAVDDAGDLQYAQRM 170

Query: 72  FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
           F +      + + F++N++I+ YS+  DP +A+++F  M+ +G+S ++F+   VLKAC  
Sbjct: 171 FDQI----PQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGC 226

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
                E + +HGL  K+  GS +F+QN LI++YV CG                       
Sbjct: 227 KSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGL---------------------- 264

Query: 192 IDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI 251
                    I  AR+LFD   I ++ L+SWNS++       +G++            D+I
Sbjct: 265 ---------IHCARKLFDD--ITDKTLVSWNSMIE-----ITGVKI-----------DII 297

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
             N++     KCG +  AQA+FD+  +++VVSW +MI  YA+ G +++AR++FD+MP ++
Sbjct: 298 VRNALXDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKN 357

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           VV+ N+M+  Y+R G   +AL++F+ M+    + PD+A+LV +L+A +QLG +  G  IH
Sbjct: 358 VVSWNSMISCYLREGQYREALDLFNKMRNSRVV-PDEATLVSILAACSQLGDLVMGKKIH 416

Query: 372 RYLEKDQFSLNGKHGV----ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
            Y+     S  G +GV    +LIDMY+KCG +  A+ +F ++   ++  WN +I  LA+H
Sbjct: 417 NYI----LSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALH 472

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           G G  A  L  EM+     PD+IT TGLL+AC+H+GLV  GL  F+ M  I+++  E++H
Sbjct: 473 GCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVXREIEH 532

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
           Y CMVD+LGR G +  A  LI  MPM+P+ V+W  LL ACR + N+ +G+ + K L+ ++
Sbjct: 533 YACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELE 592

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
             +   YVL+SN++     W D +++R +M +R +KK    S IE++G ++EF V DK  
Sbjct: 593 PHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRH 652

Query: 608 LQVRDIYYMLDNM 620
                IY MLD +
Sbjct: 653 KISSSIYAMLDQL 665


>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 591

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 207/585 (35%), Positives = 337/585 (57%), Gaps = 16/585 (2%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LL+ CK+++ + QI A +   G  ++  +  KL+A FS         +A  IF   H   
Sbjct: 14  LLKSCKSMSQLKQIQAHIFCFGLQQDRDILNKLMA-FSMDSSLGDFNYANRIFNHIH--- 69

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
                F++N +IK +      + A+ +F  + + GV  D ++   VLK    +G + EG 
Sbjct: 70  -HPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGE 128

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           +IH  + K     D ++ N L+ +Y   G +E   Q+F++M  RD+VS+N MI GYV+  
Sbjct: 129 KIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCK 188

Query: 200 NIESARELFDSMPIRER---NLISWNSVLNGYAQLKSGLQFAWQIFEKMP-ERDL--ISW 253
             E A +++  M +      N  +  S L+  A L++ L+   +I + +  E DL  I  
Sbjct: 189 RFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRN-LELGKEIHDYIANELDLTPIMG 247

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
           N++L    KCG +  A+ +FD M  ++V  W +M+ GY   G++D AR LF+  P RDVV
Sbjct: 248 NALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVV 307

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
              AM+ GYV+  +   A+ +F  MQ    + PD   +V +L+  AQLG +++G  IH Y
Sbjct: 308 LWTAMINGYVQFNHFEDAIALFGEMQIR-GVEPDKFIVVTLLTGCAQLGALEQGKWIHNY 366

Query: 374 LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
           +++++  ++     ALI+MY+KCG IE ++++F  ++D     W ++I GLA++G    A
Sbjct: 367 IDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEA 426

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493
            +L   M+   ++PDDITF  +L+AC HAGLV+EG   F  M  I+ +EP L+HYGC +D
Sbjct: 427 LELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCFID 486

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVI---WRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           +LGRAG ++ A  L++ +P + N++I   +  LLSACR Y N+++GE +A  L  + SS+
Sbjct: 487 LLGRAGLLQEAEELVKKLPDQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKSSD 546

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG 595
           SS + LL++++A    W D R+VRS MK+  +KK+PG S IE++G
Sbjct: 547 SSLHTLLASIYASADRWEDVRKVRSKMKDLGIKKVPGYSAIEVDG 591


>gi|115441803|ref|NP_001045181.1| Os01g0914600 [Oryza sativa Japonica Group]
 gi|20804987|dbj|BAB92663.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113534712|dbj|BAF07095.1| Os01g0914600 [Oryza sativa Japonica Group]
          Length = 589

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 219/626 (34%), Positives = 336/626 (53%), Gaps = 45/626 (7%)

Query: 8   NQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF 67
            +P ++  + L  LR C + +   Q HA ++T+G +  +      +   + +  +     
Sbjct: 4   RRPPHALATLLSRLRACSSASHALQCHALLLTSGHLAASPARLSNLLLLALASASASPSA 63

Query: 68  ARYI--FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
           A +    F + A    +  F WN +++ ++    P+ +L+ F  M    V+ D ++   V
Sbjct: 64  ADHADSVFAHLAEEASRHAFPWNTLVRLHA-AASPRRSLLYFSRMRRAAVAPDAYTFPAV 122

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           LKAC        GL +HG   +    +DLF +N LIS Y R                   
Sbjct: 123 LKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRI------------------ 164

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM 245
                        G+  S R++FD      R+L+SWNS++ GY      +  A  +F++M
Sbjct: 165 -------------GDCRSGRKVFDHGV---RDLVSWNSMVAGYVGCGE-VDLAQDLFDEM 207

Query: 246 PERDLISWNSMLHGCVK-CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
            +RD  SW +M+ G  +  G +D A+ LFD+MP RD+V W +MIDGYA+ GR+D AR LF
Sbjct: 208 RQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLF 267

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGH 363
           +EMP+R+V++ + ++ GYVR G   +ALE F  M +C +   PD  + V  ++A AQLG 
Sbjct: 268 EEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGI--KPDRVAAVGAVAACAQLGA 325

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           +++G  +H YLEK +   +     ALIDMY KCG ++ A  +FE +   SV  WN MI G
Sbjct: 326 LEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVG 385

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
           L  HG G  A  L  +ME      DD++   +L +C HAGLV EGL  F  M +   LEP
Sbjct: 386 LGTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEP 445

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
           +++HYG ++D+LGRAG ++ ARN IE MPMEP   +W +LL++CR++  + + E   + L
Sbjct: 446 KVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERL 505

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVR 603
             + + +S  YVLLSN++A  GMW+D  R+R +M    +KK  G S IE++G +HEF   
Sbjct: 506 ASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNG 565

Query: 604 DKSRLQVRDIYYMLDNMWTPDSVATS 629
             S     +IY  L   W   ++A S
Sbjct: 566 GSSHPHKEEIYLTL---WNLSNIAAS 588


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 212/608 (34%), Positives = 334/608 (54%), Gaps = 52/608 (8%)

Query: 27  LNDVNQIHARMITTGFIKNT----HLTTKLVASFSSSPCTPLTEFARYIF-FKYHAFREK 81
           L DV Q+HA ++ +G +  +    H   +  A  + +  +    +A  +F    H  R  
Sbjct: 76  LRDVPQLHATLLKSGAMTTSPDSFHSLLEAAALPAPATSSAHLSYAIRLFRLGPHPPRSA 135

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDN-GVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +    +N +I+++     P++AL +F  MLD+  VS D+ + +  +K+CSR+  +  G  
Sbjct: 136 RS---YNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRG 192

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +     K  F  D F+ N LI +Y  CG +  A  LF  + ++  +++N+MI GYVK+G+
Sbjct: 193 VQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGD 252

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE-RDLISWNSMLHG 259
                               W  V+              ++F+ M E R      ++L  
Sbjct: 253 --------------------WKEVV--------------EMFKGMLEVRAPFDEVTLLSV 278

Query: 260 CVKCGKMDDA---QALFDKMPKRDVVSWANM----IDGYAKLGRVDIARRLFDEMPKRDV 312
              CG++ DA   Q + +   ++ ++   N+    +D YAK G +D ARRLFD M  RDV
Sbjct: 279 ATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDV 338

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           VA +AM+ GY ++    +AL IF+ MQ    ++P+D ++V VLSA A LG ++ G  +H 
Sbjct: 339 VAWSAMISGYTQSDRCREALAIFNEMQ-GTEVNPNDVTMVSVLSACAVLGALETGKWVHS 397

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
           Y+ +    L    G AL+D Y+KCG I++A+K FE +   +   W A+I G+A +G    
Sbjct: 398 YIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSRE 457

Query: 433 AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV 492
           A +L   M   +IEP D+TF G+L AC+H  LV+EG   F  M + + + P ++HYGCMV
Sbjct: 458 ALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMV 517

Query: 493 DILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552
           D+LGRAG I+ A   I +MP+EPN V+WR LLSAC  ++N+ +GE   K ++ +D  +S 
Sbjct: 518 DLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSG 577

Query: 553 SYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRD 612
           +Y+LLSN +A +G W +A  VR  MKE+ ++K+PGCS IELEG + EFF  D    Q+ +
Sbjct: 578 NYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTE 637

Query: 613 IYYMLDNM 620
           IY  +  M
Sbjct: 638 IYEKVHEM 645


>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
 gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
          Length = 594

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 202/522 (38%), Positives = 299/522 (57%), Gaps = 44/522 (8%)

Query: 139 LQIHGLLRKVAFGSDLF-LQNCLISL--YVRCGYLEFARQLFDKMGI-RDSVSYNSMIDG 194
           +Q+H LL K +   + +     L+S   +   G L +A++LFD + I R+S  Y +MI  
Sbjct: 48  IQLHTLLIKTSLIKEKYAFGRLLLSFASFDNLGSLNYAQKLFDTVDIPRNSFMYTTMIKA 107

Query: 195 YVKSGNIESARELFDSMPIRERNLI----------------------------------- 219
           Y   GN   A   +  M   +R +                                    
Sbjct: 108 YANFGNPREAFAFYSRMLCDQRYVYPNDFTFTYVFSACSKFNGVFEGKQAHAQMIKFPFE 167

Query: 220 ----SWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK 275
               SWNS+L+ Y ++        ++F+K+   D++SWN +++G VK G +D+A+ LFD+
Sbjct: 168 FGVHSWNSLLDFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDE 227

Query: 276 MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
           MP+RDVVSW  M+ GYA  G +  A  LFDEMPKR++V+ +A++ GY++ G   KALE+F
Sbjct: 228 MPERDVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELF 287

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
             MQ    +  D+  +  +LSA A+LG +D+G  +H Y++K    ++     ALIDMYSK
Sbjct: 288 KEMQVA-KVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSK 346

Query: 396 CGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGL 455
           CG I+ A KVF++  D  V  W++MI GLA+H  GE A +L  +M    IEP +IT+  +
Sbjct: 347 CGRIDMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINI 406

Query: 456 LNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEP 515
           L AC H+GLV  GL  F  M    K +P +QHYGC+VD+LGRAG +  A  ++E MP++ 
Sbjct: 407 LAACTHSGLVDVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVKA 466

Query: 516 NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRS 575
           +  IWR LLSAC+ + N+ +GE V + LI M+  N  +YVL SN++A +  W+ + ++R 
Sbjct: 467 DPAIWRALLSACKLHRNVELGEQVGRILIKMEPQNDMNYVLFSNVYAAVNRWDISGKLRR 526

Query: 576 MMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
            MK R ++K PGCS IEL G VHEF  RD S  Q + IY +L
Sbjct: 527 EMKVRGMQKNPGCSSIELNGAVHEFVSRDHSHPQSQVIYELL 568



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 137/471 (29%), Positives = 237/471 (50%), Gaps = 58/471 (12%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LL+ CK   D+ Q+H  +I T  IK  +   +L+ SF+S        +A+ +F       
Sbjct: 37  LLQNCKNPKDLIQLHTLLIKTSLIKEKYAFGRLLLSFASFDNLGSLNYAQKLF---DTVD 93

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLML--DNGVSVDKFSASLVLKACSRLGLIEE 137
             ++ F++  +IK Y++  +P+EA   +  ML     V  + F+ + V  ACS+   + E
Sbjct: 94  IPRNSFMYTTMIKAYANFGNPREAFAFYSRMLCDQRYVYPNDFTFTYVFSACSKFNGVFE 153

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF-ARQLFDKMGIRDSVSYNSMIDGYV 196
           G Q H  + K  F   +   N L+  Y + G +    R++FDK+   D VS+N +I+GYV
Sbjct: 154 GKQAHAQMIKFPFEFGVHSWNSLLDFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGYV 213

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
           KSG+++ AR LFD MP  ER+++SW  +L GYA     L  A  +F++MP+R+L+SW+++
Sbjct: 214 KSGDLDEARRLFDEMP--ERDVVSWTIMLVGYAD-AGFLSEASCLFDEMPKRNLVSWSAL 270

Query: 257 LHGCVKCGKMDDAQALFDKMP----KRDVV------------------SWANM------- 287
           + G ++ G    A  LF +M     K D V                   W +M       
Sbjct: 271 IKGYIQIGCYSKALELFKEMQVAKVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGI 330

Query: 288 ----------IDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
                     ID Y+K GR+D+A ++F E   + V   ++M+GG   + +  KA+E+F  
Sbjct: 331 KVDAHLSTALIDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAK 390

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI-HRYLEKDQFSLNGKHGVALIDMYSKC 396
           M  E  + P + + + +L+A    G +D G+ I +R +E  +     +H   ++D+  + 
Sbjct: 391 M-IECGIEPSEITYINILAACTHSGLVDVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRA 449

Query: 397 GSIENAIKVFEQIE---DGSVDHWNAMINGLAIH---GLGELAFDLLMEME 441
           G + +A +V E +    D ++  W A+++   +H    LGE    +L++ME
Sbjct: 450 GLLHDAFRVVETMPVKADPAI--WRALLSACKLHRNVELGEQVGRILIKME 498


>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 634

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 214/623 (34%), Positives = 345/623 (55%), Gaps = 24/623 (3%)

Query: 10  PCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASF---SSSPCTPLTE 66
           PC+     L LL++C+++  ++Q+HA ++  G      +  +LVAS+   S         
Sbjct: 3   PCH----VLELLQQCRSIRHLDQLHAHLLAHGPSAVASVVPQLVASYCALSGRAGDVALC 58

Query: 67  FARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVL 126
            AR +F +        D F +N++I+ YS+   P+EAL +   +L  G+  ++F+   VL
Sbjct: 59  HARRMFDRV----PDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVL 114

Query: 127 KACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI-RDS 185
           KACSR    E  L  HG+  K+ +   +F+ N L+      G L  +R+LF +M   R+ 
Sbjct: 115 KACSRARAAEHALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNV 174

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNL-------ISWNSVLNGYAQLKSGLQFA 238
           VS+N+MI G  ++G    A  LF  M  R + +       +S   V +    L+ G    
Sbjct: 175 VSWNTMIGGCAQAGETSEACALFREM--RRQGVLADVFTFVSLLLVCSKEGNLEVGRLVH 232

Query: 239 WQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVD 298
             +       DLI  N+++    KCG +  A   FD MP ++VVSW +M+   AK G VD
Sbjct: 233 CHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVD 292

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
            AR  F++MP+R++++ NAM+  YV+ G   + L +++ M+  L L PD+ +L  VLS  
Sbjct: 293 AARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMK-SLGLTPDEVTLAGVLSVH 351

Query: 359 AQLGHIDKGVAIHRYLEKDQFSLNGKHGV-ALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
            Q G +  G  IH Y++ D FS  G   + +LIDMY++CG ++ +I +F ++ + +   W
Sbjct: 352 GQNGDLASGRMIHCYIQ-DSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISW 410

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
           N +I  LA+HG  + A      M   +  PD+ITF GLL+AC+H GL+++G   F+ MR 
Sbjct: 411 NVIIGALAMHGRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRH 470

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
           I+ ++PE++HY CMVD+LGR GH+  A +LI+DMPM+P+ V+W  L+ ACR + ++ +G+
Sbjct: 471 IYNVKPEVEHYACMVDLLGRHGHLAKAVDLIKDMPMKPDVVVWGALIGACRIHGHVEIGK 530

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVV 597
              K L+ ++  N   +VL+SN+      W D +R+R +M++R  KK  G S IE+   +
Sbjct: 531 LAIKQLLELEGINGGLFVLISNLLYETRQWEDMKRLRKLMRDRGTKKDMGVSSIEINNSI 590

Query: 598 HEFFVRDKSRLQVRDIYYMLDNM 620
           HEF V D        IY  +D +
Sbjct: 591 HEFGVEDIRHESSSQIYAAVDQL 613


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 204/537 (37%), Positives = 303/537 (56%), Gaps = 27/537 (5%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLD-NGVSVDKF-----------SASLVLKACSRLGL 134
           WNA++  Y     P+EAL++F  M   N VS +              A  V        +
Sbjct: 58  WNAMVAAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNV 117

Query: 135 IEEGLQIHGLLRK--VAFGSDLFLQ---------NCLISLYVRCGYLEFARQLFDKMGIR 183
           +     + G +R   VA    LF             ++   ++ G ++ AR+LFD M  +
Sbjct: 118 VSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEK 177

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFE 243
           D V+  +MI GY + G ++ AR LFD MP  +RN+++W ++++GYA+    +  A ++FE
Sbjct: 178 DVVAVTNMIGGYCEEGRLDEARALFDEMP--KRNVVTWTAMVSGYAR-NGKVDVARKLFE 234

Query: 244 KMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRL 303
            MPER+ +SW +ML G    G+M +A +LFD MP + VV    MI G+   G VD ARR+
Sbjct: 235 VMPERNEVSWTAMLLGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRV 294

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           F  M +RD    +AM+  Y R GY ++AL +F  MQ E  L  +  SL+ VLS    L  
Sbjct: 295 FKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQRE-GLALNFPSLISVLSVCVSLAS 353

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           +D G  +H  L + +F  +      LI MY KCG++  A +VF +     V  WN+MI G
Sbjct: 354 LDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITG 413

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
            + HGLGE A ++  +M    + PDD+TF G+L+AC+++G VKEGL  FE M+  +++EP
Sbjct: 414 YSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEP 473

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
            ++HY C+VD+LGRA  +  A  L+E MPMEP+ ++W  LL ACR +  L++ E   + L
Sbjct: 474 GIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKL 533

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
             ++  N+  YVLLSNM+A  G W D   +R  +K R++ KLPGCSWIE+E  VH F
Sbjct: 534 AQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIEVEKKVHMF 590



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 203/410 (49%), Gaps = 50/410 (12%)

Query: 161 ISLYVRCGYLEFARQLFD---------------------------------KMGIRDSVS 187
           I+ Y R G L+ AR++FD                                 KM  R++VS
Sbjct: 29  IACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVS 88

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
           +N +I G++K+G +  AR +FD+MP  +RN++SW S++ GY +    +  A ++F  MP 
Sbjct: 89  WNGLISGHIKNGMLSEARRVFDTMP--DRNVVSWTSMVRGYVR-NGDVAEAERLFWHMPH 145

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
           ++++SW  ML G ++ G++DDA+ LFD MP++DVV+  NMI GY + GR+D AR LFDEM
Sbjct: 146 KNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEM 205

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
           PKR+VV   AM+ GY RNG    A ++F+ M        ++ S   +L      G + + 
Sbjct: 206 PKRNVVTWTAMVSGYARNGKVDVARKLFEVMP-----ERNEVSWTAMLLGYTHSGRMREA 260

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
            ++   +      +  +    +I  +   G ++ A +VF+ +++     W+AMI      
Sbjct: 261 SSLFDAMPVKPVVVCNE----MIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERK 316

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           G    A  L   M+R  +  +  +   +L+ C     +  G      + R  + + +L  
Sbjct: 317 GYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVR-SEFDQDLYV 375

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
              ++ +  + G++  A+ +    P++ + V+W ++++    Y    +GE
Sbjct: 376 ASVLITMYVKCGNLVRAKQVFNRFPLK-DVVMWNSMITG---YSQHGLGE 421



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 168/342 (49%), Gaps = 55/342 (16%)

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244
           + S +  I  Y ++G ++ AR++FD  P+  R + SWN+++  Y + +   + A  +FEK
Sbjct: 22  TTSSSYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPRE-ALLLFEK 80

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
           MP+R+ +SWN ++ G +K G + +A+ +FD MP R+VVSW +M+ GY + G V  A RLF
Sbjct: 81  MPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLF 140

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
             MP ++VV+   M+GG ++ G    A ++FD M                          
Sbjct: 141 WHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMP------------------------- 175

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
                     EKD  ++       +I  Y + G ++ A  +F+++   +V  W AM++G 
Sbjct: 176 ----------EKDVVAVTN-----MIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGY 220

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
           A +G  ++A  L   M     E +++++T +L    H+G ++E    F+ M       P 
Sbjct: 221 ARNGKVDVARKLFEVMP----ERNEVSWTAMLLGYTHSGRMREASSLFDAM-------PV 269

Query: 485 LQHYGC--MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
                C  M+   G  G ++ AR + + M  E ++  W  ++
Sbjct: 270 KPVVVCNEMIMGFGLNGEVDKARRVFKGMK-ERDNGTWSAMI 310



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 118/232 (50%), Gaps = 15/232 (6%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           +++D   W+A+IK Y       EAL +F  M   G++++  S   VL  C  L  ++ G 
Sbjct: 299 KERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGK 358

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           Q+H  L +  F  DL++ + LI++YV+CG L  A+Q+F++  ++D V +NSMI GY + G
Sbjct: 359 QVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHG 418

Query: 200 NIESARELFDSM-----PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN 254
             E A  +F  M     P  +   I   S  +   ++K GL    ++FE M  +  +   
Sbjct: 419 LGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGL----ELFETMKCKYQVEPG 474

Query: 255 SMLHGCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIA 300
              + C+     +  ++++A  L +KMP + D + W  ++       ++D+A
Sbjct: 475 IEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLA 526


>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 642

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 198/543 (36%), Positives = 308/543 (56%), Gaps = 15/543 (2%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +  P L +  + + S      + L  F  M   G  V      LV K+C+      +G Q
Sbjct: 81  RPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCALTASSCQGRQ 140

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H          D+F+   L+  Y + G +E A  +FD+M ++D +  N +I GY K+G+
Sbjct: 141 VHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSVFDEMPVKDPIPINCLITGYSKAGD 200

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF--AWQIFEKM----PERDLISWN 254
           ++ AR LFD M    R   SWNS++  YA    G +F  A  +F++M       + I+  
Sbjct: 201 VDKARRLFDGM--ERRTSASWNSMIACYAH---GGEFREALTLFDRMLSEGARPNAITIT 255

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKRD---VVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           S+   C K G +D  + + D + + D   V+    +++ Y K   +D ARR FD M +RD
Sbjct: 256 SVFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHTALMEMYVKCRAIDDARREFDRMSQRD 315

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           VVA + M+ GY +NG  +++LE+F+ M+      P++ +LV V+SA AQLG  +    I 
Sbjct: 316 VVAWSTMIAGYAQNGRPLESLELFERMKAT-DCRPNEVTLVGVISACAQLGSDELVEQIG 374

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
            Y E  +  L    G ALIDMY++CG +  A  VF ++E   V  WN+MI GLA++G  E
Sbjct: 375 NYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFAE 434

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            A  L  +M    ++P++ITF  LL AC HAGLV +G+  FE M+R H + P+++H  C+
Sbjct: 435 DAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEHCACI 494

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551
           VD+L ++G +  A   I DM +EPN VIW TLLS+CR + ++ + +  ++ L+ M+  NS
Sbjct: 495 VDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVELAKLASRKLLAMEPDNS 554

Query: 552 SSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVR 611
           S YVLLSN++A  G+W DAR +R +M+ +N++KL   SWI+L+G VH+F V+D    +  
Sbjct: 555 SIYVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYSWIKLDGEVHKFLVQDTYHPRSA 614

Query: 612 DIY 614
           +IY
Sbjct: 615 EIY 617



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 200/406 (49%), Gaps = 45/406 (11%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           E++    WN++I  Y+HG + +EAL +F  ML  G   +  + + V   C++ G ++ G 
Sbjct: 212 ERRTSASWNSMIACYAHGGEFREALTLFDRMLSEGARPNAITITSVFSICAKSGDLDTGK 271

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           ++  L+ +     ++ +   L+ +YV+C  ++ AR+ FD+M  RD V++++MI GY ++G
Sbjct: 272 RVRDLIGEDDL-QNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNG 330

Query: 200 NIESARELFDSMPIRE--RNLISWNSVLNGYAQLKSGLQFAWQI--FEKMPERDLISW-- 253
               + ELF+ M   +   N ++   V++  AQL S  +   QI  + +     L S+  
Sbjct: 331 RPLESLELFERMKATDCRPNEVTLVGVISACAQLGSD-ELVEQIGNYAENQRLPLTSYLG 389

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
           ++++    +CG +  A+++F +M ++ V++W +MI G A                     
Sbjct: 390 SALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAM-------------------- 429

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
                      NG++  A+ +++ M  E  + P++ + V +L+A    G +D+G+A    
Sbjct: 430 -----------NGFAEDAISLYEKM-AENGVQPNEITFVALLAACTHAGLVDQGMAFFEE 477

Query: 374 LEKDQF-SLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHGLGE 431
           ++++   S   +H   ++D+  K G +  A K    +E + +   W  +++    H   E
Sbjct: 478 MKREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVE 537

Query: 432 LAFDLLMEMERLSIEPDDITFTGLL-NACAHAGLVKEGLLCFELMR 476
           LA   L   + L++EPD+ +   LL N  A AGL  +     +LMR
Sbjct: 538 LA--KLASRKLLAMEPDNSSIYVLLSNIYADAGLWGDAREIRDLMR 581


>gi|218189594|gb|EEC72021.1| hypothetical protein OsI_04901 [Oryza sativa Indica Group]
          Length = 589

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 218/623 (34%), Positives = 333/623 (53%), Gaps = 43/623 (6%)

Query: 10  PCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFAR 69
           P ++  + L  LR C + +   Q HA ++T+G +  +      +   + +  +     A 
Sbjct: 6   PPHALATLLSRLRACSSASHALQCHALLLTSGHLAASPARLSNLLLLALASASASPSAAD 65

Query: 70  YI--FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           +    F + A    +  F WN +++ ++    P+ +L+ F  M    V+ D ++   VLK
Sbjct: 66  HADSVFAHLAEEASRHAFPWNTLVRLHA-AASPRRSLLYFSRMRRVAVAPDAYTFPAVLK 124

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           AC        GL +HG   +    +DLF +N LIS Y R                     
Sbjct: 125 ACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRI-------------------- 164

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
                      G+  S R++FD      R+L+SWNS++ GY      +  A  +F++M +
Sbjct: 165 -----------GDCRSGRKVFDH---GVRDLVSWNSMVAGYVGCGE-VDLAQDLFDEMRQ 209

Query: 248 RDLISWNSMLHGCVK-CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
           RD  SW +M+ G  +  G +D A+ LFD+MP RD+V W +MIDGYA+ GR+D AR LF+E
Sbjct: 210 RDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEE 269

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           MP+R+V++ + ++ GYVR G   +ALE F  M     + PD  + V  ++A AQLG +++
Sbjct: 270 MPERNVISWSIVIDGYVRFGEPNEALEFFQRM-LSCGIKPDRVAAVGAVAACAQLGALEQ 328

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G  +H YLEK +   +     ALIDMY KCG ++ A  +FE +   SV  WN MI GL  
Sbjct: 329 GRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGT 388

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           HG G  A  L  +ME      DD++   +L +C HAGLV EGL  F  M +   LEP+++
Sbjct: 389 HGYGLDAIKLFNQMETERAPMDDLSVLAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVE 448

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HYG ++D+LGRAG ++ ARN IE MPMEP   +W +LL++CR++  + + E   + L  +
Sbjct: 449 HYGALIDLLGRAGRVDQARNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASL 508

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
            + +S  YVLLSN++A  GMW+D  R+R +M    +KK  G S IE++G +HEF     S
Sbjct: 509 GADDSGVYVLLSNIYADEGMWDDVFRIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNGGSS 568

Query: 607 RLQVRDIYYMLDNMWTPDSVATS 629
                +IY  L   W   ++A S
Sbjct: 569 HPHKEEIYLTL---WNLSNIAAS 588


>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
           [Vitis vinifera]
          Length = 575

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 200/533 (37%), Positives = 322/533 (60%), Gaps = 26/533 (4%)

Query: 81  KKDPFL--WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
           K  P L  W  +I++Y     P+EAL+++  +   GV +    A LVLKAC+ L +++ G
Sbjct: 55  KGTPSLSNWCHLIRSYLSQGAPREALLVYTGLRRKGVYLLGV-APLVLKACASLSIVKHG 113

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
             +H    K     D+ +   L+ +Y +CG +  +R++FD M  R++V++N+MI GY+ +
Sbjct: 114 KALHAESIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGN 173

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPE--RDLISWNS 255
           G+ +SA  LF+ M IR    ++W  +++G+A  +SG  + A + F+ +P   R++++W  
Sbjct: 174 GDSKSAVLLFEKMSIR--TAVTWIEMIDGFA--RSGDTETARRFFDDVPSELRNVVTWTV 229

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           M+ G  +  +M+ A+ +F+ MP+R+  +W++MI GY K G V  AR +FD +P R++V  
Sbjct: 230 MVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNW 289

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI----- 370
           N+++ GY +NG+S +ALE F  MQ E +  PD+ ++  VLSA +QLG +D G  I     
Sbjct: 290 NSLISGYAQNGFSEEALEAFGKMQAEGF-EPDEVTIASVLSACSQLGLLDAGKKIHHMMN 348

Query: 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
           H+ ++ +QF LNG     L+DMY+KCG + NA  +FE +   +   WN+MI+G AIHG  
Sbjct: 349 HKGIKLNQFVLNG-----LVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQS 403

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
           + A +    ME     PD+ITF  +L+ACAH G V  GL  F  M + + L   ++HYGC
Sbjct: 404 KEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEK-YGLTTGIKHYGC 462

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           ++D+LGRAG I+ A +LI+ MP++PNDV+W  LL ACR + ++ + + V + ++ +DS+ 
Sbjct: 463 LIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLGACRVHLDMEMADRVVEEIVKVDSNI 522

Query: 551 SSS----YVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHE 599
           SS     YVLLSN++A    W  A ++R  M  +  +K  GCS I      HE
Sbjct: 523 SSGCDSHYVLLSNIYAASDRWEKAEKMRMEMANKGFQKTSGCSSIMPGNNTHE 575


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 209/603 (34%), Positives = 329/603 (54%), Gaps = 56/603 (9%)

Query: 32  QIHARMITTGFIKNTHLT-TKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFL---- 86
           Q+HA +I +G +  +  +   L+ + ++SP          + +    FR    P L    
Sbjct: 34  QLHAALIKSGELTGSAKSFHSLLEAAAASPT--------LLPYAVSLFRLGPRPPLSTPC 85

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLD--NGVSVDKFSASLVLKACSRLGLIEEGLQIHGL 144
           +N +++ + H   P++AL +F  ML   +    D+ +A+  LK+CSR+  ++ G  +   
Sbjct: 86  YNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAY 145

Query: 145 LRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESA 204
             K    +D F+ + LI +Y  CG +  AR +FD       V +N+++  Y+K+G+    
Sbjct: 146 AVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEV 205

Query: 205 RELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCG 264
            E+F  M                   L+ G+ F           D ++  S++     CG
Sbjct: 206 VEMFKGM-------------------LEVGVAF-----------DEVTLVSVV---TACG 232

Query: 265 KMDDAQA-------LFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNA 317
           ++ DA+        + ++   R+      ++D YAK G +  ARRLFD M  RDVVA +A
Sbjct: 233 RIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSA 292

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           M+ GY +     +AL +F  MQ    + P+D ++V VLSA A LG ++ G  +H Y+ + 
Sbjct: 293 MISGYTQADQCREALGLFSEMQLA-RVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRK 351

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLL 437
           + SL    G AL+D Y+KCG I++A++ FE +   +   W A+I G+A +G G  A +L 
Sbjct: 352 RLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELF 411

Query: 438 MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
             M    IEP D+TF G+L AC+H+ LV+EG   F+ M R + ++P ++HYGCMVD+LGR
Sbjct: 412 SSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGR 471

Query: 498 AGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557
           AG ++ A   I  MP+EPN VIWR LLS+C  + N+ +GE   K +I ++ S+S  YVLL
Sbjct: 472 AGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLL 531

Query: 558 SNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           SN++A  G W DA  VR  MK+R ++K PGCS IEL+GVV EFF  D    ++R+IY  +
Sbjct: 532 SNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPELREIYQKV 591

Query: 618 DNM 620
           + M
Sbjct: 592 EEM 594


>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
 gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
          Length = 638

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 207/608 (34%), Positives = 339/608 (55%), Gaps = 14/608 (2%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSS--SPCTPLTEFARYIFFKYHA 77
           LLR+C+++  +NQ+HA ++  G +     +  L+AS+ +       +   AR +F     
Sbjct: 17  LLRQCRSIQRLNQLHAHLLVHGSLSAA--SDLLLASYCALAKAGHGVLCHARRLFDGI-- 72

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
                D  ++N II+ Y +   P+EAL +   ML  G+  ++F+   V+KAC+     E 
Sbjct: 73  --PGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTIAQAREH 130

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
            L +HG+  ++     +F+ N L+  Y   G L  +R+ FD+M  R+ VS+NSMI GY +
Sbjct: 131 ALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQ 190

Query: 198 SGNIESARELFDSMPIR-----ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLIS 252
           +G+      LF  M  +     E  L+S     +    L+ G     ++       DLI 
Sbjct: 191 AGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLIL 250

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
            ++++    KCG +  A+  F+ MP + VVSW +M+    K G V+ AR  FD MP+R++
Sbjct: 251 ESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNI 310

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           V+ NAM+  YV+ G   +AL++++ MQ +  L PD+ +LV VLSA  ++G +  G  +H 
Sbjct: 311 VSWNAMISCYVQRGQCHEALDLYNQMQSQ-GLAPDEITLVAVLSASGRIGDLTVGKMVHL 369

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
           Y+  + ++ +     +L+DMY+KCG ++ AI +F ++ + +V  WN +I GLA+HG    
Sbjct: 370 YIRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALD 429

Query: 433 AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV 492
                  M   S  PD ITF  LL+AC+H GL++ G   FE MR ++ ++ E++HY CMV
Sbjct: 430 TITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEVEHYACMV 489

Query: 493 DILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552
           D+LGR GH+E A  LI++MPM+P+ V+W  LL ACR + N+ +G  V K L+ ++  +  
Sbjct: 490 DLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGRQVIKQLLELEGISGG 549

Query: 553 SYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRD 612
            +VL+SN+      W D +R+R +MKE   +K  G S IE+   +HEF V D    +  +
Sbjct: 550 LFVLISNLLYETHQWEDMKRLRKLMKEWGTRKDMGVSSIEINNSIHEFGVEDIRHERSSE 609

Query: 613 IYYMLDNM 620
           IY ++D +
Sbjct: 610 IYAVVDQL 617


>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 212/612 (34%), Positives = 335/612 (54%), Gaps = 27/612 (4%)

Query: 17  TLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+LL KC +     QI   M+    +  T   ++L+  F S+   P  E        ++
Sbjct: 34  SLILLEKCNSRTQFKQILGHMMRNNLVGQTFPMSRLL--FFSAVSHP--ENLELAILLFN 89

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
            F    + +++N +I  +      ++A  ++  ML NG   D+ +   +L+       + 
Sbjct: 90  HFTPYPNLYIFNTMILGFP--FSNEKAFTIYRSMLQNGTYPDRQTFLYLLQTTK---FVA 144

Query: 137 EGLQIH------GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
           E  QIH      GLL K     + +L+N LI  YV  G  E ARQLFD+M  R+ VSYN+
Sbjct: 145 EVKQIHCHALVFGLLSK-----EEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNT 199

Query: 191 MIDGYVKSGNIESARELFDSMPIR-----ERNLISWNSVLNGYAQLKSGLQFAWQIFEKM 245
           MI G+ K GNI    ELF  M        +  ++    +     + K G     QI + +
Sbjct: 200 MILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSI 259

Query: 246 PERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFD 305
              +LI +N++L   VKC ++  A+ +FD   ++D VSW  +I GYAK+G +++A  LF+
Sbjct: 260 GSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFN 319

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
           ++P RD+V+ N+++ GY +NG  +    +F  M  E  + PD  ++V ++SA+A++G +D
Sbjct: 320 QIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAE-NVKPDKVTIVNLISAVAEMGALD 378

Query: 366 KGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
           +G  IH    K    +    G ALIDMY KCGSIE A  +F QI +  V  W  MI G A
Sbjct: 379 QGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFA 438

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL 485
            HG G  A +L   M+    +P+D+TF  +L AC+H+GLV EGL  F  M++ + +EP +
Sbjct: 439 FHGFGNKALELFSVMQA-ETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGV 497

Query: 486 QHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIG 545
           +HYGC+VD+L R+G +  A  +IE MPMEP+  IW  +LSACR + N+ + E     L+ 
Sbjct: 498 EHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLK 557

Query: 546 MDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDK 605
           ++      Y+LLSN++A  G W+ +  +R +M  R +KK+ GCS + ++G+VH+F   +K
Sbjct: 558 LEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVDGMVHDFTASNK 617

Query: 606 SRLQVRDIYYML 617
              +  DI  +L
Sbjct: 618 QHPRWMDICSIL 629


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 217/607 (35%), Positives = 337/607 (55%), Gaps = 25/607 (4%)

Query: 23  KCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKK 82
           KC  L+D  ++  RM      +NT     L++  + S    L E AR           + 
Sbjct: 62  KCDCLDDARKLFDRMPQ----RNTFTWNSLISVLTKSGF--LDEAARLF-----GSMPEP 110

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           D   WN+++  ++     +E+L  F  M      ++++S    L AC+ L  +  G Q+H
Sbjct: 111 DQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVH 170

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
            L+ K  + +D+++ + LI +Y +CG +  A ++F  M  R+ V++NS+I  Y ++G   
Sbjct: 171 ALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPAS 230

Query: 203 SARELF-----DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERD-LISWNSM 256
            A E+F       +   E  L S  S       LK GLQ   ++ +    RD L+  N++
Sbjct: 231 EALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNAL 290

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
           +    KC K+++A+ +FD+M  R+VVS  +M+ GYA+   V  AR +F +M +R+VV+ N
Sbjct: 291 VDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWN 350

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
           A++ GY +NG + +AL +F  ++ E  + P   +   +LSA A L  +  G   H ++ K
Sbjct: 351 ALIAGYTQNGENEEALRLFRLLKRE-SIWPTHYTFGNLLSACANLADLLLGRQAHTHVLK 409

Query: 377 DQFSLNGKH------GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
             F            G +LIDMY KCGSIE+  +VFE++++     WNA+I G A +G G
Sbjct: 410 QGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYG 469

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
             A  +  +M     +PD +T  G+L AC+HAGLV+EG   F  M   H L P   HY C
Sbjct: 470 AEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE-HGLIPLKDHYTC 528

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           MVD+LGRAG +  A+NLIE MP+ P+ V+W +LL+AC+ + N+ +G+  A+ L+ +D  N
Sbjct: 529 MVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWN 588

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQV 610
           S  YVLLSNM+A LG W D  RVR +M+++ + K PGCSWIE+E  VH F V+DKS    
Sbjct: 589 SGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKSHPHR 648

Query: 611 RDIYYML 617
           + IY +L
Sbjct: 649 KQIYSVL 655



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 134/437 (30%), Positives = 213/437 (48%), Gaps = 66/437 (15%)

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  +    F  ++F+QN LI +Y +C  L+ AR+LFD+M  R++ ++NS+I    KSG 
Sbjct: 37  VHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGF 96

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI----SWNSM 256
           ++ A  LF SMP  E +  SWNS+++G+AQ     + + + F KM   D +    S+ S 
Sbjct: 97  LDEAARLFGSMP--EPDQCSWNSMVSGFAQ-HDRFEESLEYFVKMHREDFLLNEYSFGSA 153

Query: 257 LHGCVKCGKMD-----DAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
           L  C   G MD        AL  K     DV   + +ID Y+K G V  A  +F  M +R
Sbjct: 154 LSACA--GLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIER 211

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
           ++V  N+++  Y +NG + +ALE+F  M  +  L PD+ +L  V+SA A L  + +G+ I
Sbjct: 212 NLVTWNSLITCYEQNGPASEALEVFVRMM-DSGLEPDEVTLASVVSACASLCALKEGLQI 270

Query: 371 H-RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE------------------- 410
           H R ++ ++F  +   G AL+DMY+KC  +  A +VF+++                    
Sbjct: 271 HARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAAS 330

Query: 411 ------------DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
                         +V  WNA+I G   +G  E A  L   ++R SI P   TF  LL+A
Sbjct: 331 VKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSA 390

Query: 459 C-----------AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNL 507
           C           AH  ++K+G   FE        E ++     ++D+  + G IE    +
Sbjct: 391 CANLADLLLGRQAHTHVLKQG---FEFQ---SGAESDIFVGNSLIDMYMKCGSIEDGSRV 444

Query: 508 IEDMPMEPNDVIWRTLL 524
            E M  E + V W  ++
Sbjct: 445 FEKMK-ERDCVSWNAII 460


>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 593

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 202/565 (35%), Positives = 314/565 (55%), Gaps = 19/565 (3%)

Query: 59  SPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVD 118
           +P    +  AR +F        +  P L +  + + S      + L  F  M   G  V 
Sbjct: 14  APPATTSRAARNLFDAV----PRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVP 69

Query: 119 KFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD 178
                LV K+C+      +G Q+H          D+F+   L+  Y + G +E A   FD
Sbjct: 70  SGCVPLVFKSCALTASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSAFD 129

Query: 179 KMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF- 237
           +M ++D +  N +I GY K+G+++ AR LFD M    R   SWNS++  YA    G +F 
Sbjct: 130 EMPVKDPIPINCLITGYSKAGDVDKARRLFDGM--ERRTSASWNSMIACYAH---GGEFR 184

Query: 238 -AWQIFEKM----PERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRD---VVSWANMID 289
            A  +F++M       + I+  S+   C K G +D  + + D + + D   V+    +++
Sbjct: 185 EALALFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHTALME 244

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
            Y K   +D ARR FD M +RDVVA + M+ GY +NG  +++LE+F+ M+      P++ 
Sbjct: 245 MYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKAT-DCRPNEV 303

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           +LV V+SA AQLG  +    I  Y E  +  L    G ALIDMY++CG +  A  VF ++
Sbjct: 304 TLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRM 363

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
           E   V  WN+MI GLA++G  E A  L  +M    ++P++ITF  LL AC HAGLV +G+
Sbjct: 364 EQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGM 423

Query: 470 LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRN 529
             FE M+R H + P+++H  C+VD+L ++G +  A   I DM +EPN VIW TLLS+CR 
Sbjct: 424 AFFEEMKREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRA 483

Query: 530 YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCS 589
           + ++ + +  ++ L+ M+  NSS YVLLSN++A  G+W DAR +R +M+ +N++KL   S
Sbjct: 484 HADVELAKLASRKLLAMEPDNSSIYVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYS 543

Query: 590 WIELEGVVHEFFVRDKSRLQVRDIY 614
           WI+L+G VH+F V+D    +  +IY
Sbjct: 544 WIKLDGEVHKFLVQDTYHPRSAEIY 568


>gi|297803844|ref|XP_002869806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315642|gb|EFH46065.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 852

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 198/575 (34%), Positives = 319/575 (55%), Gaps = 19/575 (3%)

Query: 19  LLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVAS---FSSSPCTPLTEFARYIFFKY 75
             L +C  +    Q+HA+++   +    HL   LV     F+      +  + + I    
Sbjct: 266 FFLERCVVIQQAKQVHAQLVVNRY---NHLEPILVHQTLHFTKEFSRNVVNYVKRIL--- 319

Query: 76  HAFREKK--DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLG 133
           H F+  K  D F W  +++  S     KE + ++  M  +G+     + + VL+AC ++ 
Sbjct: 320 HGFKSSKGMDSFSWGCLVRFLSQHRKFKETVGVYIEMHYSGIPPSSHAITSVLRACGKME 379

Query: 134 LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMID 193
            + +G  IH    K      +++Q  L+ LY R GY+E A+++FD +  +++VS+NS++ 
Sbjct: 380 DMVDGKPIHAQALKNGLCGCVYVQTGLVGLYSRFGYIEMAKKVFDDIAEKNTVSWNSLLH 439

Query: 194 GYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISW 253
           GY++SGN++ AR +FD +P  E++++SWN +++ YA+ K  +  A  +F  MP +   +W
Sbjct: 440 GYLESGNLDEARRVFDKIP--EKDVVSWNLIISSYAK-KGDMSNACSLFLTMPLKSSATW 496

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
           N ++ G V C +M  A+  FD MP+++ VSW  MI GY KLG V  A +LF +M ++D +
Sbjct: 497 NILIGGYVNCREMKLARTYFDTMPQKNSVSWITMISGYTKLGDVQSAEKLFRQMSRKDKL 556

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
             +AM+  Y +NG    AL++F  M +    + PD+ +L  V+SA +QLG    G  +  
Sbjct: 557 VYDAMIACYAQNGKPKDALKLFSQMLESNSDIQPDEITLSSVVSASSQLGDTSFGTWVES 616

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
           Y+ +    ++     +LID+Y K G    A K+F  +       ++AMI G  I+G+   
Sbjct: 617 YITEHGIKIDDLLSTSLIDLYMKGGDFAKAFKLFNDLIKKDTVSYSAMIMGCGINGMATE 676

Query: 433 AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV 492
           A  L  EM    I P+ +TFTGLL+A +H+GLV+EG  CF  M+  H LEP   HYG MV
Sbjct: 677 ANCLFREMIEKKIPPNLVTFTGLLSAYSHSGLVQEGYKCFNSMKD-HNLEPSADHYGIMV 735

Query: 493 DILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552
           D+LGRAG +E A  LI+ MPM+PN  +W  LL A   + N+  GE    H + +++  + 
Sbjct: 736 DMLGRAGRLEEAYELIKSMPMQPNAGVWGALLLASGLHNNVEFGEIACSHCVKLETDPTG 795

Query: 553 SYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPG 587
               L+N++  +G W+DAR VR  M+E   KKLPG
Sbjct: 796 YLSHLANIYTSVGRWDDARNVRDSMEE---KKLPG 827


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 209/599 (34%), Positives = 330/599 (55%), Gaps = 49/599 (8%)

Query: 32  QIHARMITTGFIKNT-HLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFL---- 86
           Q+HA +I +G +  +      L+ + ++SP          + +    FR    P L    
Sbjct: 34  QLHAALIKSGELTGSPKCFHSLLEAAAASP--------TLLPYAVSLFRLGPRPPLSTPC 85

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLD-NGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
           +N +++   H   P++AL +F  MLD   V  D+ + +  LK+CSR+  ++ G  I    
Sbjct: 86  YNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYA 145

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
            K    +D F+ + LI +Y  C  +  A+ LFD +     V +N++I  Y+K+GN     
Sbjct: 146 VKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVV 205

Query: 206 ELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGK 265
           E+F  M                   L+ G+ F           D I+  S++  C + G 
Sbjct: 206 EMFKGM-------------------LEVGVAF-----------DEITLVSVVTACGRIGD 235

Query: 266 MDDAQALFDKMPKRDVVSWANM----IDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
               + + + + ++ +V   N+    ID YAK G +  ARRLFD M  RDVVA +AM+ G
Sbjct: 236 AKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISG 295

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
           Y +     +AL +F  MQ    + P+D ++V VLSA A LG ++ G  +H Y+ + + SL
Sbjct: 296 YTQADQCREALALFSEMQLA-EVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSL 354

Query: 382 NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEME 441
               G AL+D Y+KCG I++A++ FE +   +   W A+I G+A +G G  A +L   M 
Sbjct: 355 TIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMR 414

Query: 442 RLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHI 501
           + SIEP D+TF G+L AC+H+ LV+EG   F+ M + + ++P  +HYGC+VD+LGRAG I
Sbjct: 415 KASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLI 474

Query: 502 EAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF 561
           + A   I  MP+EPN VIWR LLS+C  ++N+ +GE   K ++ ++ S+S  Y+LLSN++
Sbjct: 475 DEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIY 534

Query: 562 AGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           A +G W +A  +R  MK+R ++K PGCS IEL+GVV EFF  D    Q+++IY  ++ M
Sbjct: 535 ASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAEDSDHPQLKEIYQKVEEM 593



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 198/448 (44%), Gaps = 53/448 (11%)

Query: 11  CNSTQSTLLLLRKCK---TLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF 67
           C    +    L+ C    TL+    I A  +  G + +  + + L+  ++S  C  +   
Sbjct: 116 CPDQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYAS--CRDVAA- 172

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           A+ +F       E+    +WNAII  Y    +  E + MF  ML+ GV+ D+ +   V+ 
Sbjct: 173 AQLLFDAV----EENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVT 228

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           AC R+G  + G  +   + +     +  L   LI +Y +CG L  AR+LFD M  RD V+
Sbjct: 229 ACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVA 288

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYA---QLKSGLQFAWQIF 242
           +++MI GY ++     A  LF  M +   E N ++  SVL+  A    L++G      I 
Sbjct: 289 WSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIR 348

Query: 243 EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
            K     +I   +++    KCG +DDA   F+ MP ++  +W  +I G A          
Sbjct: 349 RKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMAT--------- 399

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
                                 NG   +ALE+F +M+ +  + P D + + VL A +   
Sbjct: 400 ----------------------NGRGREALELFSSMR-KASIEPTDVTFIGVLMACSHSC 436

Query: 363 HIDKGVAIHRYLEKDQ-FSLNGKHGVALIDMYSKCGSIENAIKVFEQ--IEDGSVDHWNA 419
            +++G      + +D       +H   ++D+  + G I+ A +      IE  +V  W A
Sbjct: 437 LVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVI-WRA 495

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEP 447
           +++  A+H   E+  + L ++  +S+ P
Sbjct: 496 LLSSCAVHKNVEIGEEALKQI--VSLNP 521


>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 203/618 (32%), Positives = 332/618 (53%), Gaps = 103/618 (16%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           + +S + LL+ CK++  + QI  +++ TGF ++     K +    + P      +A  IF
Sbjct: 31  TKKSCIFLLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVC-CTDPSIGNLHYAERIF 89

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL 132
                + +    F++N +IK ++     ++A+++F  + + G+S D F+   V KA   L
Sbjct: 90  ----NYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCL 145

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
           G + EG +++G + K                      LEF           D+   NS++
Sbjct: 146 GEVREGEKVYGFVVKSG--------------------LEF-----------DTYVCNSLM 174

Query: 193 DGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLIS 252
           D Y + G +++ R                                  Q+FE+MP+RD++S
Sbjct: 175 DMYAEVGRVQNLR----------------------------------QVFEEMPQRDVVS 200

Query: 253 WNSMLHGCVKCGKMDDA----QALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           WN ++ G VKC + +DA    + +F+ MP + V+ W +M+ GY   G++D AR LF+  P
Sbjct: 201 WNVLISGYVKCRRYEDAVDVFRQIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSP 260

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            RDVV   AM+ GYV+      A+ +F  MQ +  + PD  +LV +L+            
Sbjct: 261 VRDVVLWTAMINGYVQFNRFDDAVALFREMQIK-RVSPDRFTLVALLT------------ 307

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
                        +   G ALI+MY+KCG IE ++++F  +++     W ++I GLA++G
Sbjct: 308 -------------DAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNG 354

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
               A +L  EM +  ++PDDITF G+L+AC+H GLV+EG   F  M  ++++EP+L+HY
Sbjct: 355 KTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHY 414

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVI---WRTLLSACRNYENLNVGEPVAKHLIG 545
           GC++D+LGRAG ++ A  LIE  P   N+VI   +  LLSACR + N+ +GE VAK L+G
Sbjct: 415 GCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVG 474

Query: 546 MDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDK 605
           ++S +SS + LL+N++A    W D  +VR  MK+  +KK+PGCS +E+ G+VHEF V D 
Sbjct: 475 IESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFLVGDA 534

Query: 606 SRLQVRDIYYMLDNMWTP 623
           S  ++R+IY MLD++  P
Sbjct: 535 SHPEMREIYSMLDSIAKP 552


>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 602

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 206/587 (35%), Positives = 317/587 (54%), Gaps = 44/587 (7%)

Query: 74  KYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLG 133
           K+H+ R K+ P +  +++   S G    +A+    L+  NG+ +   + + +L+ C+   
Sbjct: 6   KFHSNRTKRVPCIVKSLLHLSSQG-QLFQAISSLGLLSRNGIRLPSKTLAYLLQQCANTK 64

Query: 134 LIEEGLQIHGLLRKVAFG-SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
            ++ G  +H  L+       + FL N LI++Y +CG    A ++FD+M  R+  S+N M+
Sbjct: 65  SLKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYPSAYKVFDEMSTRNLYSWNGML 124

Query: 193 DGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA----------------------- 229
            GY K G I+ AR+LFD MP  E++++SWN+++  YA                       
Sbjct: 125 SGYAKLGKIKPARKLFDKMP--EKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYN 182

Query: 230 ---------------QLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFD 274
                          +L+   Q   Q+       +L+  +S+L    KC +M DA+ LFD
Sbjct: 183 EYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFD 242

Query: 275 KMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEI 334
           +M  RDV++W  M+ GYA+ G V+ AR LFD MP+++ VA  +++ GY R+    KALE+
Sbjct: 243 EMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALEL 302

Query: 335 FDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYS 394
           F  M   L + PD  +    L A A +  ++ G  IH YL +     N     +LIDMYS
Sbjct: 303 FTKMMA-LNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYS 361

Query: 395 KCGSIENAIKVFEQIEDG-SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
           KCG +E    VF+ + D   V  WN +I+ LA HG G+ A  +  +M RL ++PD IT  
Sbjct: 362 KCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLI 421

Query: 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPM 513
            LLNAC+H+GLV+EGL  +E +   H + P  +HY C++D+LGRAGH +   N +E MP 
Sbjct: 422 VLLNACSHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHFDTLMNQLEKMPC 481

Query: 514 EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV 573
           +PND IW  LL  CR + N+  G  VA+ +I +D  +S++YVLLS++ A +G W     V
Sbjct: 482 KPNDEIWNALLGVCRMHGNIEFGREVAEKIIELDPQSSAAYVLLSSIHAAVGRWELVENV 541

Query: 574 RSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           R +M ER+++K    SWIE+E  VH F   D+       IY  L  +
Sbjct: 542 RQLMNERHVRKDRAISWIEIENKVHSFTASDRLHPLKEVIYLALKQL 588



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 149/327 (45%), Gaps = 44/327 (13%)

Query: 23  KCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK-------- 74
           K K L    Q H +++  GF+ N  +++ ++ +++   C+ + + AR +F +        
Sbjct: 195 KVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAK--CSEMGD-ARRLFDEMIIRDVLA 251

Query: 75  -------------YHAFRE------KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGV 115
                          A RE      +K+P  W ++I  Y+      +AL +F  M+   +
Sbjct: 252 WTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNI 311

Query: 116 SVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQ 175
             D+F+ S  L A + +  +  G QIHG L +     +  + + LI +Y +CG LE  R 
Sbjct: 312 RPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGRL 371

Query: 176 LFDKMGIR-DSVSYNSMIDGYVKSGNIESARELFDSMPIR---ERNLISWNSVLNGYAQL 231
           +FD MG + D V +N++I    + G  + A ++FD M +R   + + I+   +LN  +  
Sbjct: 372 VFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDM-VRLGMKPDRITLIVLLNACSH- 429

Query: 232 KSGL-QFAWQIFEKMPERDLISWNSMLHGCV-----KCGKMDDAQALFDKMPKRDVVSWA 285
            SGL Q   +++E +     +  N   + C+     + G  D      +KMP +      
Sbjct: 430 -SGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHFDTLMNQLEKMPCKPNDEIW 488

Query: 286 NMIDGYAKL-GRVDIARRLFDEMPKRD 311
           N + G  ++ G ++  R + +++ + D
Sbjct: 489 NALLGVCRMHGNIEFGREVAEKIIELD 515


>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
 gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
          Length = 686

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 196/521 (37%), Positives = 300/521 (57%), Gaps = 30/521 (5%)

Query: 118 DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLF 177
           D FS + +L A   LG+         L  ++    D    N +IS +   G +  AR  F
Sbjct: 96  DSFSYNTLLHA---LGVSSSLADARALFDEMPV-KDSVSYNVMISSHANHGLVSLARHYF 151

Query: 178 DKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF 237
           D    +D+VS+N M+  Y+++G I+ AR+LFDS    E + ISWN+++ GY Q  S ++ 
Sbjct: 152 DLAPEKDAVSWNGMLAAYIRNGRIQEARDLFDSRT--EWDAISWNALMAGYVQC-SQIEE 208

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
           A ++F +MP+RD++SWN+M+ G  + G M +A+ LFD  P RDV +W  ++ GYA+ G +
Sbjct: 209 AQKMFNRMPQRDVVSWNTMVSGHARRGDMAEARRLFDVAPIRDVFTWTAVVSGYAQNGML 268

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
           + A+R+FD MP+++ V+ NAMM  YV+     +A E+FD M C      + AS   +L+ 
Sbjct: 269 EEAKRVFDAMPEKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCR-----NVASWNTMLTG 323

Query: 358 IAQLGHIDKGVAIHRYL-EKDQFS-----------------LNGKHGVALIDMYSKCGSI 399
            AQ G +D+  AI   + +KD  S                 L     +    MY KCG++
Sbjct: 324 YAQAGMLDEARAIFDMMPQKDAVSWAAMLAAYSQGGFSEETLQLFKEMGRCAMYFKCGNM 383

Query: 400 ENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
           E A   FE++E+  +  WN MI G A HG G+ A ++   M + S +PDDIT  G+L AC
Sbjct: 384 EEAHSAFEEMEERDIVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAAC 443

Query: 460 AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI 519
           +H+GLV++G+  F  M R   +  + +HY CM+D+LGRAG ++ A NL++DMP EP+  +
Sbjct: 444 SHSGLVEKGISYFYSMHRDFGVTAKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTM 503

Query: 520 WRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579
           W  LL A R + N  +G   A+ +  ++  N+  YVLLSN++A  G W D  ++R MM E
Sbjct: 504 WGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRLMMHE 563

Query: 580 RNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           R +KK+PG SWIE++  VH F V D    +  DIY  L+++
Sbjct: 564 RGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYGFLEDL 604



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 152/342 (44%), Gaps = 57/342 (16%)

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM 245
           +  N  I  ++++G +  A  LF +M    R+  ++N++L GYA     L  A   F  +
Sbjct: 36  IRRNKAITAHMRAGRVPDAERLFAAMS--RRSTSTYNAMLGGYAA-NGRLTLALSFFRSI 92

Query: 246 PERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFD 305
           P  D  S+N++LH       + DA+ALFD+MP +D VS+  MI  +A  G V +AR  FD
Sbjct: 93  PRPDSFSYNTLLHALGVSSSLADARALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFD 152

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
             P++D V+ N M+  Y+RNG   +A ++FD+                            
Sbjct: 153 LAPEKDAVSWNGMLAAYIRNGRIQEARDLFDSRT-------------------------- 186

Query: 366 KGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
                    E D  S N     AL+  Y +C  IE A K+F ++    V  WN M++G A
Sbjct: 187 ---------EWDAISWN-----ALMAGYVQCSQIEEAQKMFNRMPQRDVVSWNTMVSGHA 232

Query: 426 IHGLGELAFDLLMEMERLSIEP--DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
             G      D+        + P  D  T+T +++  A  G+++E    F+ M      E 
Sbjct: 233 RRG------DMAEARRLFDVAPIRDVFTWTAVVSGYAQNGMLEEAKRVFDAM-----PEK 281

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLS 525
               +  M+    +   +E A+ L + MP   N   W T+L+
Sbjct: 282 NAVSWNAMMAAYVQRRMMEEAKELFDAMPCR-NVASWNTMLT 322



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 154/341 (45%), Gaps = 32/341 (9%)

Query: 246 PERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFD 305
           P+ ++I  N  +   ++ G++ DA+ LF  M +R   ++  M+ GYA  GR+ +A   F 
Sbjct: 31  PDAEVIRRNKAITAHMRAGRVPDAERLFAAMSRRSTSTYNAMLGGYAANGRLTLALSFFR 90

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
            +P+ D  + N ++     +     A  +FD M  +     D  S  +++S+ A  G + 
Sbjct: 91  SIPRPDSFSYNTLLHALGVSSSLADARALFDEMPVK-----DSVSYNVMISSHANHGLV- 144

Query: 366 KGVAIHRY---LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
             +A H +    EKD  S NG     ++  Y + G I+ A  +F+   +     WNA++ 
Sbjct: 145 -SLARHYFDLAPEKDAVSWNG-----MLAAYIRNGRIQEARDLFDSRTEWDAISWNALMA 198

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
           G       E A  +   M     + D +++  +++  A  G + E        RR+  + 
Sbjct: 199 GYVQCSQIEEAQKMFNRMP----QRDVVSWNTMVSGHARRGDMAEA-------RRLFDVA 247

Query: 483 P--ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           P  ++  +  +V    + G +E A+ + + MP E N V W  +++A   Y    + E   
Sbjct: 248 PIRDVFTWTAVVSGYAQNGMLEEAKRVFDAMP-EKNAVSWNAMMAA---YVQRRMMEEAK 303

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581
           +    M   N +S+  +   +A  GM ++AR +  MM +++
Sbjct: 304 ELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFDMMPQKD 344



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 80  EKKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
           E++D   WN +I  Y+ HG   KEAL +F  M       D  +   VL ACS  GL+E+G
Sbjct: 394 EERDIVSWNTMIAGYARHGFG-KEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKG 452

Query: 139 LQ-IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMIDGYV 196
           +   + + R     +      C+I L  R G L+ A  L   M    DS  + +++    
Sbjct: 453 ISYFYSMHRDFGVTAKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASR 512

Query: 197 KSGNIE----SARELFDSMP 212
              N E    +A ++F+  P
Sbjct: 513 IHRNSELGRNAAEKIFELEP 532


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 201/628 (32%), Positives = 345/628 (54%), Gaps = 29/628 (4%)

Query: 18  LLLLRKCKT---LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
           L +L+ C     L    +IH  +  +G   +  + T L+  +S   C  ++  A  IF K
Sbjct: 183 LSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSK--CGEIS-LACEIFQK 239

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
                ++++   W AII+  +      EA  ++  ML  G+S +  +   +L +C+    
Sbjct: 240 M----KERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEA 295

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           +  G +IH  + +    +D+ + N LI++Y +C  ++ AR+ FD+M  RD +S+++MI G
Sbjct: 296 LNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAG 355

Query: 195 YVKSG--NIESARELFDSMPIRER-----NLISWNSVLNG---YAQLKSGLQFAWQIFEK 244
           Y +SG  + ES  E+F  +    R     N +++ S+L     +  L+ G Q   +I + 
Sbjct: 356 YAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKV 415

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
             E D     ++ +   KCG + +A+ +F KM  ++VV+WA+++  Y K G +  A ++F
Sbjct: 416 GFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVF 475

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
            EM  R+VV+ N M+ GY ++G   K  E+  +M+ E +  PD  +++ +L A   L  +
Sbjct: 476 SEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGF-QPDRVTIISILEACGALSAL 534

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
           ++G  +H    K     +     +LI MYSKCG +  A  VF++I +     WNAM+ G 
Sbjct: 535 ERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGY 594

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
             HG+G  A DL   M +  + P++ITFT +++AC  AGLV+EG   F +M+   +++P 
Sbjct: 595 GQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPG 654

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
            QHYGCMVD+LGRAG ++ A   I+ MP EP+  +W  LL AC++++N+ + E  A H++
Sbjct: 655 KQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHIL 714

Query: 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
            ++ SN+S YV LSN++A  G W+D+ +VR +M ++ LKK  G S IE++G +H F   D
Sbjct: 715 RLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAED 774

Query: 605 KSRLQVRDIYYMLDNM--------WTPD 624
            +  ++  I+  L+ +        +TPD
Sbjct: 775 CAHPEIDSIHAELEMLTKEMKEAGYTPD 802



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 136/582 (23%), Positives = 253/582 (43%), Gaps = 34/582 (5%)

Query: 23  KCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKK 82
           K +   D   +H ++   G   + +L   L+  +S        E      F+    R   
Sbjct: 90  KLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVE----QVFRRMTLR--- 142

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           D   W+++I  Y+    P +A   F  M D  +  ++ +   +LKAC+   ++E+  +IH
Sbjct: 143 DVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIH 202

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
            +++     +D+ +   LI++Y +CG +  A ++F KM  R+ VS+ ++I    +   + 
Sbjct: 203 TVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLN 262

Query: 203 SARELFDSMPIR--ERNLISWNSVLNGY---AQLKSGLQFAWQIFEKMPERDLISWNSML 257
            A EL++ M       N +++ S+LN       L  G +    I E+  E D++  N+++
Sbjct: 263 EAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALI 322

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG-----RVDIARRLFDEMPKRDV 312
               KC  + DA+  FD+M KRDV+SW+ MI GYA+ G      +D   +L + M +  V
Sbjct: 323 TMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGV 382

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELY---LHPDDASLVIVLSAIAQLGHIDKGVA 369
                     ++      ALE    +  E+       D +    + +  A+ G I +   
Sbjct: 383 FPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQ 442

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
           +   +E      N     +L+ MY KCG + +A KVF ++   +V  WN MI G A  G 
Sbjct: 443 VFSKMENK----NVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGD 498

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
               F+LL  M+    +PD +T   +L AC     ++ G L      ++  LE +     
Sbjct: 499 IAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKL-GLESDTVVAT 557

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA----KHLIG 545
            ++ +  + G +  AR + + +    + V W  +L+    Y    +G        + L  
Sbjct: 558 SLIGMYSKCGEVTEARTVFDKIS-NRDTVAWNAMLAG---YGQHGIGPEAVDLFKRMLKE 613

Query: 546 MDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPG 587
               N  ++  + +     G+  + R +  +M+E + +  PG
Sbjct: 614 RVPPNEITFTAVISACGRAGLVQEGREIFRIMQE-DFRMKPG 654



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 182/408 (44%), Gaps = 67/408 (16%)

Query: 232 KSG-LQFAWQIFEKMPERDLISWNSMLHGCV--KCGKM---DDAQALFDKMPKR----DV 281
           K+G L+ A Q+   + +R L+  NS  +GC+   C K+   +D + +  ++ +     D+
Sbjct: 55  KAGRLKEAIQLLGIIKQRGLLV-NSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDI 113

Query: 282 VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
               ++I+ Y+K G V    ++F  M  RDVV  ++M+  Y  N +  KA + F+ M+ +
Sbjct: 114 YLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMK-D 172

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIEN 401
             + P+  + + +L A      ++K   IH  ++      +     ALI MYSKCG I  
Sbjct: 173 ANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISL 232

Query: 402 AIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461
           A ++F+++++ +V  W A+I   A H     AF+L  +M +  I P+ +TF  LLN+C  
Sbjct: 233 ACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNT 292

Query: 462 AGLVKEGLLCFELMRRIHK------LEPELQHYGCMVDILGRAGHIEAAR---------- 505
              +  G       RRIH       LE ++     ++ +  +   I+ AR          
Sbjct: 293 PEALNRG-------RRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRD 345

Query: 506 --------------------------NLIEDMPME---PNDVIWRTLLSACRNYENLNVG 536
                                      L+E M  E   PN V + ++L AC  +  L  G
Sbjct: 346 VISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQG 405

Query: 537 EPVAKHL--IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
             +   +  +G +S  S    +  NM+A  G   +A +V S M+ +N+
Sbjct: 406 RQIHAEISKVGFESDRSLQTAIF-NMYAKCGSIYEAEQVFSKMENKNV 452


>gi|125573086|gb|EAZ14601.1| hypothetical protein OsJ_04525 [Oryza sativa Japonica Group]
          Length = 616

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 212/596 (35%), Positives = 326/596 (54%), Gaps = 42/596 (7%)

Query: 9   QPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFA 68
           +P ++  + L  LR C + +   Q HA ++T+G +  +      +   + +  +     A
Sbjct: 5   RPPHALATLLSRLRACSSASHALQCHALLLTSGHLAASPARLSNLLLLALASASASPSAA 64

Query: 69  RYI--FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVL 126
            +    F + A    +  F WN +++ ++    P+ +L+ F  M    V+ D ++   VL
Sbjct: 65  DHADSVFAHLAEEASRHAFPWNTLVRLHA-AASPRRSLLYFSRMRRAAVAPDAYTFPAVL 123

Query: 127 KACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSV 186
           KAC        GL +HG   +    +DLF +N LIS Y R                    
Sbjct: 124 KACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRI------------------- 164

Query: 187 SYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP 246
                       G+  S R++FD      R+L+SWNS++ GY      +  A  +F++M 
Sbjct: 165 ------------GDCRSGRKVFDHGV---RDLVSWNSMVAGYVGCGE-VDLAQDLFDEMR 208

Query: 247 ERDLISWNSMLHGCVK-CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFD 305
           +RD  SW +M+ G  +  G +D A+ LFD+MP RD+V W +MIDGYA+ GR+D AR LF+
Sbjct: 209 QRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFE 268

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHI 364
           EMP+R+V++ + ++ GYVR G   +ALE F  M +C +   PD  + V  ++A AQLG +
Sbjct: 269 EMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGI--KPDRVAAVGAVAACAQLGAL 326

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
           ++G  +H YLEK +   +     ALIDMY KCG ++ A  +FE +   SV  WN MI GL
Sbjct: 327 EQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGL 386

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
             HG G  A  L  +ME      DD++   +L +C HAGLV EGL  F  M +   LEP+
Sbjct: 387 GTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPK 446

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
           ++HYG ++D+LGRAG ++ ARN IE MPMEP   +W +LL++CR++  + + E   + L 
Sbjct: 447 VEHYGALIDLLGRAGRVDQARNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLA 506

Query: 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
            + + +S  YVLLSN++A  GMW+D  R+R +M    +KK  G S IE++G +HEF
Sbjct: 507 SLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSAEGMKKNIGRSVIEVDGQIHEF 562


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 196/510 (38%), Positives = 301/510 (59%), Gaps = 14/510 (2%)

Query: 112 DNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLE 171
           +N ++ +K  AS V     R G I+  +++      +   S +   + L +   + G+ E
Sbjct: 39  NNVIASNKLIASYV-----RCGDIDSAVRV---FEDMKVKSTVTWNSILAAFAKKPGHFE 90

Query: 172 FARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQL 231
           +ARQLF+K+   ++VSYN M+  +     +  AR  FDSMP+++  + SWN++++  AQ+
Sbjct: 91  YARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKD--VASWNTMISALAQV 148

Query: 232 KSGLQF-AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDG 290
             GL   A ++F  MPE++ +SW++M+ G V CG +D A   F   P R V++W  MI G
Sbjct: 149 --GLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITG 206

Query: 291 YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
           Y K GRV++A RLF EM  R +V  NAM+ GYV NG +   L +F  M  E  + P+  S
Sbjct: 207 YMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTM-LETGVKPNALS 265

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE 410
           L  VL   + L  +  G  +H+ + K   S +   G +L+ MYSKCG +++A ++F QI 
Sbjct: 266 LTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIP 325

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470
              V  WNAMI+G A HG G+ A  L  EM++  ++PD ITF  +L AC HAGLV  G+ 
Sbjct: 326 RKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQ 385

Query: 471 CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNY 530
            F  MRR   +E + +HY CMVD+LGRAG +  A +LI+ MP +P+  I+ TLL ACR +
Sbjct: 386 YFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIH 445

Query: 531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSW 590
           +NLN+ E  AK+L+ +D + ++ YV L+N++A    W+    +R  MK+ N+ K+PG SW
Sbjct: 446 KNLNLAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSW 505

Query: 591 IELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           IE+  VVH F   D+   ++  I+  L ++
Sbjct: 506 IEINSVVHGFRSSDRLHPELASIHEKLKDL 535



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 108/244 (44%), Gaps = 37/244 (15%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           WNA+I  Y      ++ L +F  ML+ GV  +  S + VL  CS L  ++ G Q+H L+ 
Sbjct: 231 WNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVC 290

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           K    SD      L+S+Y +CG L+ A +LF ++  +D V +N+MI GY + G  + A  
Sbjct: 291 KCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALR 350

Query: 207 LFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKM 266
           LFD M                    K GL+  W           I++ ++L  C   G +
Sbjct: 351 LFDEMK-------------------KEGLKPDW-----------ITFVAVLLACNHAGLV 380

Query: 267 DDAQALFDKMPKRDV------VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
           D     F+ M +RD         +A M+D   + G++  A  L   MP +   A    + 
Sbjct: 381 DLGVQYFNTM-RRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLL 439

Query: 321 GYVR 324
           G  R
Sbjct: 440 GACR 443



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 108/265 (40%), Gaps = 33/265 (12%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           S  S LL       L    Q+H  +       +T   T LV+ +S   C  L + A  +F
Sbjct: 265 SLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSK--CGDLKD-AWELF 321

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL 132
            +      +KD   WNA+I  Y+     K+AL +F  M   G+  D  +   VL AC+  
Sbjct: 322 IQI----PRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHA 377

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQN--CLISLYVRCGYLEFARQLFDKMGIRDSVS-YN 189
           GL++ G+Q    +R+  FG +   ++  C++ L  R G L  A  L   M  +   + Y 
Sbjct: 378 GLVDLGVQYFNTMRR-DFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYG 436

Query: 190 SMIDGYVKSGNIESARELFDSMPIRERNLISWN-SVLNGYAQLKS--GLQFAWQIFE--- 243
           +++       N+  A           +NL+  + ++  GY QL +    Q  W       
Sbjct: 437 TLLGACRIHKNLNLAE-------FAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIR 489

Query: 244 ---------KMPERDLISWNSMLHG 259
                    K+P    I  NS++HG
Sbjct: 490 RSMKDNNVVKIPGYSWIEINSVVHG 514


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 197/576 (34%), Positives = 319/576 (55%), Gaps = 76/576 (13%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           ++ +  +WN +++ Y+   DP  AL ++ +M+  G+  + ++   +LK+C++    EEG 
Sbjct: 27  QEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEEGQ 86

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           QIHG + K+ +  DL++   LIS+Y                                ++G
Sbjct: 87  QIHGHVLKLGYEPDLYVHTSLISMYA-------------------------------QNG 115

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
            +E A ++FD      R+++S+ +++ GYA     ++ A ++F+++P +D++SWN+M+ G
Sbjct: 116 RLEDAHKVFDRS--SHRDVVSYTALITGYAS-SGNIRSAQEMFDEIPVKDVVSWNAMISG 172

Query: 260 CVKCGKMDDAQALFDKMPK--------------------------RDVVSWAN------- 286
             + G   +A  LF +M K                          R V SW +       
Sbjct: 173 YAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSN 232

Query: 287 ------MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQC 340
                 +ID Y+K G+V+ A  LF+ +  +DVV+ N ++GGY       +AL +F  M  
Sbjct: 233 LKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEM-L 291

Query: 341 ELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV--ALIDMYSKCGS 398
                P+D ++V +L A A LG ID G  IH Y++K    +     +  +LIDMY+KCG 
Sbjct: 292 RSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGD 351

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
           IE A +VF  +   S+  WNAMI G A+HG     FDL   M +  IEPDDITF GLL+A
Sbjct: 352 IEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSA 411

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
           C+H+G +  G   F+ M + + + P+L+HYGCM+D+LG +G  + A+ +I+ MPMEP+ V
Sbjct: 412 CSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGV 471

Query: 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578
           IW +LL ACR + NL + E  A++L+ ++  N  SYVLLSN++A  G W++  +VR+++ 
Sbjct: 472 IWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLN 531

Query: 579 ERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
            + +KK+PGCS IE++  VHEF V DK   + R+IY
Sbjct: 532 GKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIY 567



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 131/445 (29%), Positives = 206/445 (46%), Gaps = 75/445 (16%)

Query: 155 FLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR 214
            L+ C++S +       +A  +F  +   + + +N+M+ GY  S +  SA +L+  M   
Sbjct: 3   LLEFCVLSPHFDG--FPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVM--- 57

Query: 215 ERNLISWNSVLNGYA------------QLKSGLQFAWQIFEKMPERDLISWNSMLHGCVK 262
               IS   + N Y               + G Q    + +   E DL    S++    +
Sbjct: 58  ----ISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQ 113

Query: 263 CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGY 322
            G+++DA  +FD+   RDVVS+  +I GYA  G +  A+ +FDE+P +DVV+ NAM+ GY
Sbjct: 114 NGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGY 173

Query: 323 VRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN 382
              G   +ALE+F  M  +  + PD+ ++V VLSA AQ   ++ G  +H +++   F  N
Sbjct: 174 AETGSYKEALELFKEMM-KTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSN 232

Query: 383 GKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMER 442
            K   ALID+YSKCG +E A  +FE +    V  WN +I G     L + A  L  EM R
Sbjct: 233 LKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLR 292

Query: 443 LSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH-----KLE-----PELQHYGCMV 492
               P+D+T   +L ACAH G +  G       R IH     KL+     P L+    ++
Sbjct: 293 SGESPNDVTIVSILPACAHLGAIDIG-------RWIHVYIDKKLKDVTNAPSLR--TSLI 343

Query: 493 DILGRAGHIEAARNLIEDM----------------------------------PMEPNDV 518
           D+  + G IEAA  +   M                                   +EP+D+
Sbjct: 344 DMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDI 403

Query: 519 IWRTLLSACRNYENLNVGEPVAKHL 543
            +  LLSAC +   L++G  + K +
Sbjct: 404 TFVGLLSACSHSGKLDLGRHIFKSM 428


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 212/624 (33%), Positives = 344/624 (55%), Gaps = 62/624 (9%)

Query: 12  NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
            + +S L L+  C  +  + QIHA+ I +       + TK++ SF S  C    ++A  +
Sbjct: 4   QTPKSVLALIETCTNIQQLKQIHAKSIISSLSYTQFIITKIINSFLSHACL---DYATQV 60

Query: 72  FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLD-NGVSVDKFSASLVLKACS 130
           F +     ++ D F++NA+I+ YS    P  A+ ++  M     +  DK++   V KAC+
Sbjct: 61  FNQ----TQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACA 116

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
               +E+G ++HG++ ++ +  D FLQ+ L++ Y+ CG +                    
Sbjct: 117 SQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEI-------------------- 156

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL 250
                   GN +   + FD+     ++++ WN+++ GYA+    L  ++ +F++M E   
Sbjct: 157 --------GNAQQVFDEFDA-----KDVVFWNALITGYARQGMVLD-SFGVFKEMVEVKE 202

Query: 251 ISWN-----SMLHGCV-----KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIA 300
           +  N      ++  C+     K G+      + D + +  V   A +I+ Y K G +D A
Sbjct: 203 VRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGA 262

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
           R+LFDE+P+++ V  N+++ GY + G   + +E+   M     L PD  ++  VLSA AQ
Sbjct: 263 RKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLS-NLKPDRFTVSGVLSACAQ 321

Query: 361 LGHIDKGVAIHRYLEK----DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
           +G  + G  +HR+ EK    D F      G ALIDMY+KCG I  A KVF+Q+ + +V  
Sbjct: 322 MGAFNLGNWVHRFAEKKGIWDVFI-----GTALIDMYAKCGFIGAARKVFDQMNERNVAT 376

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           WNA+++G A HG  E A +L  EM      PD ITF  +L+ACAH+GLV+ G   F+LM 
Sbjct: 377 WNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQYFDLML 436

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
           + +K+ P ++HYGCMVD+LGRAG ++ AR LI+ M +EPN V+W  LLSAC  + N+ +G
Sbjct: 437 QYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLSACSIHGNIEIG 496

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
           E  A H+I +++ +  SYV+L+N++A    +N  + VR MM E+ + K  GCS IE+  V
Sbjct: 497 EWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMVEKGICKSHGCSMIEIGDV 556

Query: 597 VHEFFVRDKSRLQVRDIYYMLDNM 620
           VHEF V DK   +  +IY +LD +
Sbjct: 557 VHEFVVADKMHPRSEEIYSVLDEL 580


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 211/675 (31%), Positives = 351/675 (52%), Gaps = 89/675 (13%)

Query: 24  CKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKD 83
           C  ++   Q+HA ++ +G  ++  L+ KL+  ++     P    AR  F +     + KD
Sbjct: 53  CTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIP---HARLTFDQI----QTKD 105

Query: 84  PFLWNAIIKTYSHGLDPKEALVMFCLMLDNG-VSVDKFSASLVLKACSRLGLIEEGLQIH 142
            + WN++I  Y+       A+  F   L    +  D ++   V++AC   G +++G ++H
Sbjct: 106 VYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC---GNLDDGRKVH 162

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
            L+ K+ F  D+++    I  Y R G++  A  LFD M IRD  ++N+MI G+  +G + 
Sbjct: 163 CLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVA 222

Query: 203 SARELFDSMPIR-------------------------------------ERNLISWNSVL 225
            A E+FD M  +                                     E +L   N+++
Sbjct: 223 EALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALI 282

Query: 226 NGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS-- 283
           N YA+    L+ A  IF +M  RD++SWNS+L    +  K   A  +++KM    VV   
Sbjct: 283 NMYAKFGE-LRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDL 341

Query: 284 ------------------------------W--------ANMIDGYAKLGRVDIARRLFD 305
                                         W          +ID YAKLG +D AR++F+
Sbjct: 342 LTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFE 401

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
            +P +DV++ N+++ GY +NG + +A++++ +M+      P+  + V +L+A +QLG + 
Sbjct: 402 GLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALK 461

Query: 366 KGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
           +G+  H  L K+    +      L+DMY KCG + +A+ +F ++   S   WNA+I+   
Sbjct: 462 QGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHG 521

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL 485
           +HG G  A  L  EM+   ++PD ITF  LL+AC+H+GLV EG  CF+LM+  + + P L
Sbjct: 522 LHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSL 581

Query: 486 QHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIG 545
           +HYGCMVD+ GRAGH+E A N +++MP+ P+  +W  LL ACR +EN+ +   V+ HL+ 
Sbjct: 582 KHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLK 641

Query: 546 MDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDK 605
           ++S N   YVLLSN++A LG W     VRS+ ++R LKK PG S IE++  +  F+  ++
Sbjct: 642 VESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQ 701

Query: 606 SRLQVRDIYYMLDNM 620
           +  +  +IY  L N+
Sbjct: 702 THPKCEEIYSELRNL 716



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 153/337 (45%), Gaps = 9/337 (2%)

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPK-RDVVSWANMIDGYAKLGRVDIARRLFD 305
           E+  I +N +   C K        AL     K + +   A +I+ YA LG +  AR  FD
Sbjct: 40  EKREIDFNRIFLYCTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFD 99

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
           ++  +DV   N+M+  Y R G+   A++ F+      +L  D  +   V+ A    G++D
Sbjct: 100 QIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC---GNLD 156

Query: 366 KGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
            G  +H  + K  F  +     + I  YS+ G +  A  +F+ +    +  WNAMI+G  
Sbjct: 157 DGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFY 216

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL 485
           ++G    A ++  EM   S+  D +T + LL  C     +  G+L      ++  LE +L
Sbjct: 217 LNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKL-GLEFDL 275

Query: 486 QHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYEN--LNVGEPVAKHL 543
                ++++  + G + +A  +   M +  + V W +LL+A    +   + +G     H 
Sbjct: 276 FVCNALINMYAKFGELRSAETIFNQMKVR-DIVSWNSLLAAFEQNKKPVIALGVYNKMHS 334

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580
           IG+   +  + V L+++ A LG +  +R +   +  R
Sbjct: 335 IGV-VPDLLTLVSLASVAAELGNFLSSRSIHGFVTRR 370


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 201/540 (37%), Positives = 308/540 (57%), Gaps = 12/540 (2%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           KKD   WNA++  Y+      EA  +F  M       +  S + +L A    G ++E  +
Sbjct: 136 KKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHR----NSISWNGLLAAYVHNGRLKEARR 191

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
               L +     +L   NCL+  YV+   L  ARQLFD+M +RD +S+N+MI GY + G+
Sbjct: 192 ----LFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGD 247

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
           +  A+ LF+  PIR+  + +W ++++GY Q    +  A + F++MP ++ IS+N+ML G 
Sbjct: 248 LSQAKRLFNESPIRD--VFTWTAMVSGYVQ-NGMVDEARKYFDEMPVKNEISYNAMLAGY 304

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
           V+  KM  A  LF+ MP R++ SW  MI GY + G +  AR+LFD MP+RD V+  A++ 
Sbjct: 305 VQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIIS 364

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           GY +NG+  +AL +F  M+ +     + ++    LS  A +  ++ G  +H  + K  F 
Sbjct: 365 GYAQNGHYEEALNMFVEMKRDGE-SSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFE 423

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
                G AL+ MY KCGS + A  VFE IE+  V  WN MI G A HG G  A  L   M
Sbjct: 424 TGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESM 483

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500
           ++  ++PD+IT  G+L+AC+H+GL+  G   F  M R + ++P  +HY CM+D+LGRAG 
Sbjct: 484 KKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGR 543

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560
           +E A NL+ +MP +P    W  LL A R + N  +GE  A+ +  M+  NS  YVLLSN+
Sbjct: 544 LEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNL 603

Query: 561 FAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +A  G W D  ++RS M+E  ++K+ G SW+E++  +H F V D    +   IY  L+ +
Sbjct: 604 YAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAFLEEL 663



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 203/396 (51%), Gaps = 26/396 (6%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           D+   N  IS ++R G+ + A ++F+ M  R SVSYN+MI GY+++     AR+LFD MP
Sbjct: 45  DIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMP 104

Query: 213 IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
             ER+L SWN +L GY + +  L  A ++F+ MP++D++SWN+ML G  + G +D+A+ +
Sbjct: 105 --ERDLFSWNVMLTGYVRNRR-LGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREV 161

Query: 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
           F+KMP R+ +SW  ++  Y   GR+  ARRLF+     ++++ N +MGGYV+      A 
Sbjct: 162 FNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDAR 221

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE-KDQFSLNGKHGVALID 391
           ++FD M        D  S   ++S  AQ+G + +   +      +D F+       A++ 
Sbjct: 222 QLFDRMPVR-----DVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTW-----TAMVS 271

Query: 392 MYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDIT 451
            Y + G ++ A K F+++   +   +NAM+ G   +    +A +L   M   +I   +  
Sbjct: 272 GYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTM 331

Query: 452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM 511
            TG        G + +    F++M      + +   +  ++    + GH E A N+  +M
Sbjct: 332 ITGY----GQNGGIAQARKLFDMM-----PQRDCVSWAAIISGYAQNGHYEEALNMFVEM 382

Query: 512 PME---PNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
             +    N   +   LS C +   L +G+ V   ++
Sbjct: 383 KRDGESSNRSTFSCALSTCADIAALELGKQVHGQVV 418



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 161/318 (50%), Gaps = 22/318 (6%)

Query: 210 SMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDD 268
           S+  ++ ++++WN  ++  + +++G    A ++F  MP R  +S+N+M+ G ++  K   
Sbjct: 38  SVKFKDPDIVTWNKAIS--SHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSL 95

Query: 269 AQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYS 328
           A+ LFDKMP+RD+ SW  M+ GY +  R+  A +LFD MPK+DVV+ NAM+ GY +NG+ 
Sbjct: 96  ARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFV 155

Query: 329 MKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVA 388
            +A E+F+ M      H +  S   +L+A    G + +     R L + Q +        
Sbjct: 156 DEAREVFNKMP-----HRNSISWNGLLAAYVHNGRLKEA----RRLFESQSNWELISWNC 206

Query: 389 LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD 448
           L+  Y K   + +A ++F+++    V  WN MI+G A  G    A  L  E    S   D
Sbjct: 207 LMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNE----SPIRD 262

Query: 449 DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLI 508
             T+T +++     G+V E    F+ M     ++ E+  Y  M+    +   +  A  L 
Sbjct: 263 VFTWTAMVSGYVQNGMVDEARKYFDEM----PVKNEIS-YNAMLAGYVQYKKMVIAGELF 317

Query: 509 EDMPMEPNDVIWRTLLSA 526
           E MP   N   W T+++ 
Sbjct: 318 EAMPCR-NISSWNTMITG 334



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 76/174 (43%), Gaps = 11/174 (6%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           Q+H +++  GF     +   L+  +    C    E A  +F       E+KD   WN +I
Sbjct: 412 QVHGQVVKAGFETGCFVGNALLGMYFK--CGSTDE-ANDVFEGI----EEKDVVSWNTMI 464

Query: 92  KTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ-IHGLLRKVA 149
             Y+ HG   ++ALV+F  M   GV  D+ +   VL ACS  GLI+ G +  + + R   
Sbjct: 465 AGYARHGFG-RQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYN 523

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMIDGYVKSGNIE 202
                    C+I L  R G LE A  L   M     + S+ +++      GN E
Sbjct: 524 VKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTE 577


>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
          Length = 461

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 195/481 (40%), Positives = 289/481 (60%), Gaps = 37/481 (7%)

Query: 110 MLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY 169
           M+   V+ + ++  L++K C  +G I +G +IH  + K  F  DLF++N LI +Y  CG 
Sbjct: 1   MVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCG- 59

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA 229
                                          I  AR +F+   I +  L++WNS+++GY 
Sbjct: 60  ------------------------------RIGDARAMFEVCSISD--LVTWNSMIDGYV 87

Query: 230 QLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMID 289
           +    +  A ++FE+MPERDL SWNSM+ G V  G M  A+ LF+KMP RD+VSW  MID
Sbjct: 88  K-NGEIGAARELFEEMPERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMID 146

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
           GYA++  ++IA  LF+ MP R+VV+ N M+  YVR     + L +FD M  E    P++A
Sbjct: 147 GYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETM--PNEA 204

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQ-FSLNGKHGVALIDMYSKCGSIENAIKVFEQ 408
           +LV VL+A A LG +D+G  IH Y++ ++    +     AL+ MY+KCG+++ A  VF++
Sbjct: 205 TLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDK 264

Query: 409 IEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
           + + SV  WN+MI G  +HG  + A ++ ++ME+    P+D TF  +L+ACAH+G++ EG
Sbjct: 265 MSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEG 324

Query: 469 LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACR 528
              F+LMRR +K+EP+++HYGCMVD+LGRAG ++    LI  MPME    +W  LLSACR
Sbjct: 325 WWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACR 384

Query: 529 NYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGC 588
            + N  + E VAK LI ++  +   Y+LLSN++A  G W+D   VR MMKER L K  G 
Sbjct: 385 THSNSELAEIVAKRLIELEPRDIGPYLLLSNIYAAEGKWDDVEIVRKMMKERGLTKTTGL 444

Query: 589 S 589
           S
Sbjct: 445 S 445


>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 614

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 202/587 (34%), Positives = 336/587 (57%), Gaps = 20/587 (3%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LL+ CK+++ + QI A +   G  ++     KL+A FS         +A  IF   H   
Sbjct: 14  LLKSCKSMSQLKQIQAHIFCVGLQQDRDTLNKLMA-FSMDSSLGDFNYANRIFNYIH--- 69

Query: 80  EKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
              DP  F++N +IK +      + A+ +F  + ++GV  D ++   VLK    +G + E
Sbjct: 70  ---DPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVRE 126

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G ++H  + K     D ++ N  + +Y   G +E   Q+F++M  RD+VS+N MI GYV+
Sbjct: 127 GEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVR 186

Query: 198 SGNIESARELFDSMPIRER---NLISWNSVLNGYAQLKSGLQFAWQIFEKMP-ERDL--I 251
               E A +++  M        N  +  S L+  A L++ L+   +I + +  E DL  I
Sbjct: 187 CKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRN-LELGKEIHDYIASELDLTTI 245

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
             N++L    KCG +  A+ +FD M  ++V  W +M+ GY   G++D AR LF+  P RD
Sbjct: 246 MGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRD 305

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           +V   AM+ GYV+     + + +F  MQ    + PD   +V +L+  AQ G +++G  IH
Sbjct: 306 IVLWTAMINGYVQFNRFEETIALFGEMQIR-GVKPDKFIVVTLLTGCAQSGALEQGKWIH 364

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
            Y+++++  ++   G ALI+MY+KCG IE + ++F  +++     W ++I GLA++G   
Sbjct: 365 NYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPS 424

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            A +L   M+   ++PDDITF  +L+AC+HAGLV+EG   F  M  ++ +EP L+HYGC 
Sbjct: 425 EALELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGCF 484

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVI---WRTLLSACRNYENLNVGEPVAKHLIGMDS 548
           +D+LGRAG ++ A  L++ +P + N++I   +  LLSACR Y N+++GE +A  L  + S
Sbjct: 485 IDLLGRAGLLQEAEELVKKLPAQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKS 544

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG 595
           S+SS + LL++++A    W D R+VR+ MK+  +KK+PG S IE++G
Sbjct: 545 SDSSLHTLLASIYASADRWEDVRKVRNKMKDLGIKKVPGYSAIEVDG 591


>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 194/504 (38%), Positives = 298/504 (59%), Gaps = 21/504 (4%)

Query: 125 VLKACSRLGLIEEGLQIHG-LLRKVAFGSDLFLQNCLISLYVRCGY--LEFARQLFDKMG 181
           +L+ CS +   +E +QIHG LL+K    + L +   L+S Y R     L + R +FD + 
Sbjct: 16  LLERCSNM---KELMQIHGQLLKKGTIRNQLTVSTLLVS-YARIELVNLAYTRVVFDSIS 71

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELF-----DSMPIRERNLISWNSVLNGYAQLKSGLQ 236
             ++V +N+M+  Y  S + E+A  L+     +S+P    N  ++  +L   + L S  +
Sbjct: 72  SPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVP---HNSYTFPFLLKACSAL-SAFE 127

Query: 237 FAWQIFEKMPER----DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYA 292
              QI   + +R    ++ + NS+L      G +  A  LF+++P RD+VSW  MIDGY 
Sbjct: 128 ETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYI 187

Query: 293 KLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLV 352
           K G +D+A ++F  MP+++V++   M+ G+VR G   +AL +   M     + PD  +L 
Sbjct: 188 KFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVA-GIKPDSITLS 246

Query: 353 IVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG 412
             LSA A LG +++G  IH Y+EK++  ++   G  L DMY KCG +E A+ VF ++E  
Sbjct: 247 CSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKK 306

Query: 413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCF 472
            V  W A+I GLAIHG G  A D   +M++  I P+ ITFT +L AC+HAGL +EG   F
Sbjct: 307 CVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLF 366

Query: 473 ELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYEN 532
           E M  ++ ++P ++HYGCMVD++GRAG ++ AR  IE MP++PN  IW  LL+AC+ +++
Sbjct: 367 ESMSSVYNIKPSMEHYGCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNACQLHKH 426

Query: 533 LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
             +G+ + K LI +D  +S  Y+ L++++A  G WN   RVRS +K R L   PGCS I 
Sbjct: 427 FELGKEIGKILIELDPDHSGRYIHLASIYAAAGEWNQVVRVRSQIKHRGLLNHPGCSSIT 486

Query: 593 LEGVVHEFFVRDKSRLQVRDIYYM 616
           L GVVHEFF  D S   +++IY M
Sbjct: 487 LNGVVHEFFAGDGSHPHIQEIYGM 510



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 230/445 (51%), Gaps = 21/445 (4%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           +T+ T  LL +C  + ++ QIH +++  G I+N    + L+ S++      L  + R +F
Sbjct: 9   NTEQTQALLERCSNMKELMQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLA-YTRVVF 67

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL 132
                     +  +WN +++ YS+  DP+ AL+++  ML N V  + ++   +LKACS L
Sbjct: 68  DSI----SSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSAL 123

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
              EE  QIH  + K  FG +++  N L+ +Y   G ++ A  LF+++  RD VS+N MI
Sbjct: 124 SAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMI 183

Query: 193 DGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQL---KSGLQFAWQIFEKMPERD 249
           DGY+K GN++ A ++F +MP  E+N+ISW +++ G+ ++   K  L    Q+     + D
Sbjct: 184 DGYIKFGNLDMAYKIFQAMP--EKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPD 241

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKRDV----VSWANMIDGYAKLGRVDIARRLFD 305
            I+ +  L  C   G ++  + +   + K ++    V    + D Y K G ++ A  +F 
Sbjct: 242 SITLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFS 301

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
           ++ K+ V A  A++GG   +G   +AL+ F  MQ +  ++P+  +   +L+A +  G  +
Sbjct: 302 KLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQ-KAGINPNSITFTAILTACSHAGLTE 360

Query: 366 KGVAIHRYLEKD-QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMING 423
           +G ++   +        + +H   ++D+  + G ++ A +  E +    +   W A++N 
Sbjct: 361 EGKSLFESMSSVYNIKPSMEHYGCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNA 420

Query: 424 LAIHGLGELAFDLLMEMERLSIEPD 448
             +H      F+L  E+ ++ IE D
Sbjct: 421 CQLHK----HFELGKEIGKILIELD 441


>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
 gi|219884683|gb|ACL52716.1| unknown [Zea mays]
 gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
          Length = 601

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 193/514 (37%), Positives = 298/514 (57%), Gaps = 10/514 (1%)

Query: 114 GVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFA 173
           G ++      LVLK+C+      +G Q H          D+F+Q  L+  Y + G ++ A
Sbjct: 73  GGAIPSGCIPLVLKSCALSAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSA 132

Query: 174 RQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA---Q 230
              F++M I+D +  N +I GY +SG++E AR LFDSMP   +   SWNS++  YA   +
Sbjct: 133 VMAFEEMPIKDPIPMNCLITGYSRSGDVEEARRLFDSMP--RKTSASWNSMIACYAHGGE 190

Query: 231 LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDD---AQALFDKMPKRDVVSWANM 287
            +  L    Q+  +    + I+  ++   C K G ++    A+A   +   ++V+    +
Sbjct: 191 FQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQNVIVHTAL 250

Query: 288 IDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD 347
           ++ Y K   +D ARR FD MP+RDVVA + M+ GY  NG   ++LE+F+ M+      P+
Sbjct: 251 MEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKAT-NCKPN 309

Query: 348 DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFE 407
           + +LV VLSA AQLG  + G  I  Y+E     L    G ALIDMY+KCG +  A  VF 
Sbjct: 310 EVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFH 369

Query: 408 QIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKE 467
           ++E   V  WN+MI GLA++G  E A  L  EM    ++P++ITF  LL AC HAGLV +
Sbjct: 370 RMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDK 429

Query: 468 GLLCFELMRRIHK-LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           G+  F+ M++  +   P+++H  C+VD+L ++G +  A   I DM +EPN VIW TLLSA
Sbjct: 430 GMAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTLLSA 489

Query: 527 CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLP 586
           CR + ++ + +  A  L+ ++ ++SS YVLLSN++A  G+W D R +R +M+ +NL+KL 
Sbjct: 490 CRAHADVELAKLAAGKLVVLEPNSSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLS 549

Query: 587 GCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
             SWIEL+G VH F V+D    +  +IY ++D +
Sbjct: 550 AYSWIELDGEVHRFLVQDTYHPRSAEIYNVVDGL 583



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 195/447 (43%), Gaps = 87/447 (19%)

Query: 77  AFREK--KDPFLWNAIIKTYS-------------------------------HGLDPKEA 103
           AF E   KDP   N +I  YS                               HG + +EA
Sbjct: 135 AFEEMPIKDPIPMNCLITGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEA 194

Query: 104 LVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQN----- 158
           L +F  ML  G S +  + + V   C++ G +E G       R  A+ S+  LQN     
Sbjct: 195 LTLFDQMLREGASPNAITITTVFSICAKTGDLETG------RRAKAWVSEEDLQNVIVHT 248

Query: 159 CLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ER 216
            L+ +YV+C  ++ AR+ FD+M  RD V++++MI GY  +G    + ELF+ M     + 
Sbjct: 249 ALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKP 308

Query: 217 NLISWNSVLNGYAQLKS---GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALF 273
           N ++   VL+  AQL S   G Q    I  +         ++++    KCG +  A+ +F
Sbjct: 309 NEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVF 368

Query: 274 DKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE 333
            +M ++ V++W +MI G A  G  + A  L+ EM                          
Sbjct: 369 HRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEM-------------------------- 402

Query: 334 IFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ--FSLNGKHGVALID 391
           + D +Q      P++ + + +L+A    G +DKG+A  + ++K++   S   +H   ++D
Sbjct: 403 VGDGVQ------PNEITFLALLTACTHAGLVDKGMAFFQEMKKNKQHASPQVEHCACIVD 456

Query: 392 MYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
           +  K G +  A K    +E + +   W  +++    H   ELA   L   + + +EP+  
Sbjct: 457 LLCKSGRLWEAYKFICDMEVEPNAVIWTTLLSACRAHADVELA--KLAAGKLVVLEPNSS 514

Query: 451 TFTGLL-NACAHAGLVKEGLLCFELMR 476
           +   LL N  A AGL  +     +LMR
Sbjct: 515 SIYVLLSNIYADAGLWGDVREIRDLMR 541


>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
 gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 203/586 (34%), Positives = 328/586 (55%), Gaps = 47/586 (8%)

Query: 12  NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
           +S  S  LL++ CKT+  ++Q HA +I  G ++  H       S S+S     + F R +
Sbjct: 7   SSNPSISLLIKSCKTIPHLHQFHAHIIHKG-LEQDHFIISHFLSISTSVSYSTSIFNRLL 65

Query: 72  FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV-DKFSASLVLKACS 130
                        FL+N ++K +S      +   +F  M  +  ++ DK++  L++K CS
Sbjct: 66  ---------NPSTFLYNILLKIFSKNSQFIDTFSLFYRMKQSEYALSDKYTYPLLIKVCS 116

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
               ++EG  +HG   +     D+++ + LIS Y +C                       
Sbjct: 117 NELRLKEGEIVHGSAIRCGVSDDVYVGSSLISFYGKCK---------------------- 154

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL 250
                     I SAR++FD +P  ERN++SW +++ GYA +   L+ A ++FE+MPER+L
Sbjct: 155 ---------EILSARKVFDEIP--ERNVVSWTAMVAGYASV-GDLENAKRVFERMPERNL 202

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
            SWN+M+ G  K G +  A+ +FD+M +R+VVS+  MIDGYAK+G +  AR LFDE P++
Sbjct: 203 PSWNAMISGLGKAGDLSGARKVFDEMVERNVVSFTVMIDGYAKVGDMASARALFDEAPEK 262

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
           DVVA +A++ GY RN    +A++IF  M   + + PD+  +V ++SA +QLG+ D    +
Sbjct: 263 DVVAWSALISGYSRNEQPNEAVKIFFEM-VSMNVKPDEFIMVSLMSACSQLGNSDLAKWV 321

Query: 371 HRYLEKDQFSLNGKHGVA-LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
             YL +        H +A LIDM++KCG++E A+K+F+ +    +    ++I GL+IHG 
Sbjct: 322 DSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQDMPSRDLIPCCSLIQGLSIHGR 381

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
           G  A +L   M    + PD + FT +L AC+  GL+++G   F+ M+  + + P   HY 
Sbjct: 382 GVEAVELFNRMLDEGLIPDTVAFTVILTACSRGGLIEDGWHFFDTMKNKYSVVPSPNHYA 441

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549
           CMVD+L RAG + AA +L++ MP++P+   W  LL AC+ + ++ + E VA  L+ ++  
Sbjct: 442 CMVDLLSRAGQLRAAYDLLKSMPLKPHACAWGALLGACKLHGDVELREEVANRLLELEPE 501

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG 595
            + SYVLLSN++A    W D   VR  MKER ++K+PGCS+I  E 
Sbjct: 502 KAGSYVLLSNIYASANQWLDVSIVRDEMKERGIRKIPGCSYIFTEA 547


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 235/687 (34%), Positives = 347/687 (50%), Gaps = 97/687 (14%)

Query: 18  LLLLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF---ARYI 71
           L LL  C   K+L +  +IH       F+KNT       ++  SS    LT        +
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQH-----FLKNT-------SNADSSVLHKLTRLYLSCNQV 59

Query: 72  FFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKAC 129
                 F E  +P   LWN II+ Y+       A+ ++  ML  GV  +K++   VLKAC
Sbjct: 60  VLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKAC 119

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
           S L  IE+G++IH   +     SD+F+   L+  Y +CG L  A++LF  M  RD V++N
Sbjct: 120 SGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWN 179

Query: 190 SMIDGYVKSGNIESARELFDSM-----------------PIRERNLISWNSVLNGYAQLK 232
           +MI G    G  + A +L   M                  + E   +     L+GY   +
Sbjct: 180 AMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRR 239

Query: 233 S-------------------GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALF 273
           S                    L +A +IF+ M  R+ +SW++M+ G V    M +A  LF
Sbjct: 240 SFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELF 299

Query: 274 DKMPKRD-------------------------------VVSWANMID---------GYAK 293
           D+M  +D                               ++   +++D          YAK
Sbjct: 300 DQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAK 359

Query: 294 LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI 353
            G +D A R FDEM  +D V+ +A++ G V+NG +  AL IF  MQ    + PD  +++ 
Sbjct: 360 CGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLS-GIDPDLTTMLG 418

Query: 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
           VL A + L  +  G   H YL    F+ +     ALIDMYSKCG I  A +VF +++   
Sbjct: 419 VLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHD 478

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE 473
           +  WNAMI G  IHGLG  A  L  ++  L ++PDDITF  LL++C+H+GLV EG L F+
Sbjct: 479 IVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFD 538

Query: 474 LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENL 533
            M R   + P ++H  CMVDILGRAG I+ A + I +MP EP+  IW  LLSACR ++N+
Sbjct: 539 AMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNI 598

Query: 534 NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
            +GE V+K +  +   ++ ++VLLSN+++  G W+DA  +R   K+  LKK+PGCSWIE+
Sbjct: 599 ELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEI 658

Query: 594 EGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            G+VH F   D+S LQ+  I   L+ +
Sbjct: 659 NGIVHAFVGGDQSHLQLSQINRKLEEL 685


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 201/586 (34%), Positives = 322/586 (54%), Gaps = 78/586 (13%)

Query: 78  FREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
           F   ++P   +WN + + ++   DP  AL ++  M+  G+  + ++   +LK+C++L   
Sbjct: 20  FETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKAS 79

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
           +EGLQIHG + K+ +  DL++   LIS+YV                              
Sbjct: 80  KEGLQIHGHVLKLGYELDLYVHTSLISMYV------------------------------ 109

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
            ++  +E A ++FD      R+++S+ +++ GYA  +  ++ A  +F+++P +D++SWN+
Sbjct: 110 -QNERLEDAHKVFDRSS--HRDVVSYTALVTGYAS-RGYIESARNMFDEIPVKDVVSWNA 165

Query: 256 MLHGCVKCGKMDDAQALFDKMPK--------------------------RDVVSWAN--- 286
           M+ G V+ G   +A  LF +M K                          R V SW     
Sbjct: 166 MISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHG 225

Query: 287 ----------MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFD 336
                     +ID Y+K G ++ A  LF  +  +DV++ N ++GGY       +AL +F 
Sbjct: 226 FGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQ 285

Query: 337 NMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV--ALIDMYS 394
            M       P+D +++ +L A A LG ID G  IH Y++K    +     +  +LIDMYS
Sbjct: 286 EM-LRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYS 344

Query: 395 KCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTG 454
           KCG IE A +VF  +   S+  WNAMI G A+HG    AFD+   M +  I+PDDITF G
Sbjct: 345 KCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVG 404

Query: 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPME 514
           LL+AC+HAG++  G   F  M   +K+ P+L+HYGCM+D+LG +G  + A  +I  M ME
Sbjct: 405 LLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTME 464

Query: 515 PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVR 574
           P+ VIW +LL AC+ + N+ +GE  A++L  ++ +N  SYVLLSN++A  G WN+  R+R
Sbjct: 465 PDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIR 524

Query: 575 SMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            ++ ++ +KK+PGCS IE++ VVHEF + DK   + R+IY ML+ M
Sbjct: 525 GLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEM 570



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 33/156 (21%)

Query: 402 AIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461
           AI VFE I++ ++  WN M  G A+      A  L + M  L + P+  TF  LL +CA 
Sbjct: 16  AISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 75

Query: 462 AGLVKEGL--------LCFEL-----------------MRRIHKLEPELQH-----YGCM 491
               KEGL        L +EL                 +   HK+     H     Y  +
Sbjct: 76  LKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTAL 135

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSA 526
           V      G+IE+ARN+ +++P++  DV+ W  ++S 
Sbjct: 136 VTGYASRGYIESARNMFDEIPVK--DVVSWNAMISG 169


>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
          Length = 601

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 193/514 (37%), Positives = 298/514 (57%), Gaps = 10/514 (1%)

Query: 114 GVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFA 173
           G ++      LVLK+C+      +G Q H          D+F+Q  L+  Y + G ++ A
Sbjct: 73  GGAIPSGCIPLVLKSCALSAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSA 132

Query: 174 RQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA---Q 230
              F++M I+D +  N +I GY +SG++E AR LFDSMP   +   SWNS++  YA   +
Sbjct: 133 VMAFEEMPIKDPIPMNCLIIGYSRSGDVEEARRLFDSMP--RKTSASWNSMIACYAHGGE 190

Query: 231 LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDD---AQALFDKMPKRDVVSWANM 287
            +  L    Q+  +    + I+  ++   C K G ++    A+A   +   ++V+    +
Sbjct: 191 FQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQNVIVHTAL 250

Query: 288 IDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD 347
           ++ Y K   +D ARR FD MP+RDVVA + M+ GY  NG   ++LE+F+ M+      P+
Sbjct: 251 MEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKAT-NCKPN 309

Query: 348 DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFE 407
           + +LV VLSA AQLG  + G  I  Y+E     L    G ALIDMY+KCG +  A  VF 
Sbjct: 310 EVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFH 369

Query: 408 QIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKE 467
           ++E   V  WN+MI GLA++G  E A  L  EM    ++P++ITF  LL AC HAGLV +
Sbjct: 370 RMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDK 429

Query: 468 GLLCFELMRRIHK-LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           G+  F+ M++  +   P+++H  C+VD+L ++G +  A   I DM +EPN VIW TLLSA
Sbjct: 430 GMAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTLLSA 489

Query: 527 CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLP 586
           CR + ++ + +  A  L+ ++ ++SS YVLLSN++A  G+W D R +R +M+ +NL+KL 
Sbjct: 490 CRAHADVELAKLAAGKLVVLEPNSSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLS 549

Query: 587 GCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
             SWIEL+G VH F V+D    +  +IY ++D +
Sbjct: 550 AYSWIELDGEVHRFLVQDTYHPRSAEIYNVVDGL 583



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 196/447 (43%), Gaps = 87/447 (19%)

Query: 77  AFREK--KDPFLW-------------------------------NAIIKTYSHGLDPKEA 103
           AF E   KDP                                  N++I  Y+HG + +EA
Sbjct: 135 AFEEMPIKDPIPMNCLIIGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEA 194

Query: 104 LVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQN----- 158
           L +F  ML  G S +  + + V   C++ G +E G       R  A+ S+  LQN     
Sbjct: 195 LTLFDQMLREGASPNAITITTVFSICAKTGDLETG------RRAKAWVSEEDLQNVIVHT 248

Query: 159 CLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ER 216
            L+ +YV+C  ++ AR+ FD+M  RD V++++MI GY  +G    + ELF+ M     + 
Sbjct: 249 ALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKP 308

Query: 217 NLISWNSVLNGYAQLKS---GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALF 273
           N ++   VL+  AQL S   G Q    I  +         ++++    KCG +  A+ +F
Sbjct: 309 NEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVF 368

Query: 274 DKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE 333
            +M ++ V++W +MI G A  G  + A  L+ EM                          
Sbjct: 369 HRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEM-------------------------- 402

Query: 334 IFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ--FSLNGKHGVALID 391
           + D +Q      P++ + + +L+A    G +DKG+A  + ++K++   S   +H   ++D
Sbjct: 403 VGDGVQ------PNEITFLALLTACTHAGLVDKGMAFFQEMKKNKQHASPQVEHCACIVD 456

Query: 392 MYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
           +  K G +  A K    +E + +   W  +++    H   ELA   L   + + +EP+  
Sbjct: 457 LLCKSGRLWEAYKFICDMEVEPNAVIWTTLLSACRAHADVELA--KLAAGKLVVLEPNSS 514

Query: 451 TFTGLL-NACAHAGLVKEGLLCFELMR 476
           +   LL N  A AGL  +     +LMR
Sbjct: 515 SIYVLLSNIYADAGLWGDVREIRDLMR 541


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 198/628 (31%), Positives = 340/628 (54%), Gaps = 29/628 (4%)

Query: 18  LLLLRKCKT---LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
           L +L+ C     L    +IH  +   G   +  + T L+  +S   C  ++  A  +F K
Sbjct: 161 LSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSK--CGEIS-VACEVFHK 217

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
                 +++   W AII+  +      EA  ++  ML  G+S +  +   +L +C+    
Sbjct: 218 M----TERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEA 273

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           +  G +IH  + +    +D+ + N LI++Y +C  ++ AR++FD+M  RD +S+++MI G
Sbjct: 274 LNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAG 333

Query: 195 YVKSG--NIESARELFDSMPIRER-----NLISWNSVL---NGYAQLKSGLQFAWQIFEK 244
           Y +SG  + ES  E+F  +    R     N +++ S+L     +  L+ G Q   ++ + 
Sbjct: 334 YAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKV 393

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
             E D     ++ +   KCG + +A+ +F KM  ++VV+W + +  Y K G +  A ++F
Sbjct: 394 GFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVF 453

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
            EMP R+VV+ N M+ GY +NG  +K  E+  +M+ E +  PD  +++ +L A   L  +
Sbjct: 454 SEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGF-QPDRVTVITILEACGALAGL 512

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
           ++G  +H    K     +     +LI MYSKCG +  A  VF+++ +     WNAM+ G 
Sbjct: 513 ERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGY 572

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
             HG G  A DL   M +  + P++IT T +++AC+ AGLV+EG   F +M+   K+ P 
Sbjct: 573 GQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPR 632

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
            QHYGCMVD+LGRAG ++ A   I+ MP EP+  +W  LL AC+++ N+ + E  A H++
Sbjct: 633 KQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHIL 692

Query: 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
            ++ S +S Y+ LSN++A  G W+D+ +VR +M +R LKK  G S IE++G +H F   D
Sbjct: 693 ELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAED 752

Query: 605 KSRLQVRDIYYMLDNM--------WTPD 624
            +  ++  I+  L+ +        +TPD
Sbjct: 753 CAHPEIDAIHAELETLTKEMKEAGYTPD 780



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 137/543 (25%), Positives = 248/543 (45%), Gaps = 69/543 (12%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D   W+++I  Y+    P +A   F  M D  +  ++ +   +LKAC+   ++E+G +I
Sbjct: 120 RDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKI 179

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H +++ +   +D+ +   LI++Y +CG +  A ++F KM  R+ VS+ ++I    +   +
Sbjct: 180 HTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKL 239

Query: 202 ESARELFDSMPIR--ERNLISWNSVLNGY---AQLKSGLQFAWQIFEKMPERDLISWNSM 256
             A EL++ M       N +++ S+LN       L  G +    I E+  E D+I  N++
Sbjct: 240 NEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANAL 299

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
           +    KC  + +A+ +FD+M KRDV+SW+ MI GYA+ G  D  +   DE+         
Sbjct: 300 ITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKD--KESIDEV--------- 348

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
                           ++ + M+ E  + P+  + + +L A    G +++G  IH  L K
Sbjct: 349 ---------------FQLLERMRRE-GVFPNKVTFMSILRACTAHGALEQGRQIHAELSK 392

Query: 377 DQFSLNGKHGVALIDMYSKCGSI-------------------------------ENAIKV 405
             F L+     A+ +MY+KCGSI                                +A KV
Sbjct: 393 VGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKV 452

Query: 406 FEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC-AHAGL 464
           F ++   +V  WN MI G A +G     F+LL  M+    +PD +T   +L AC A AGL
Sbjct: 453 FSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGL 512

Query: 465 VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
            +  L+  E ++    LE +      ++ +  + G +  AR + + M    + V W  +L
Sbjct: 513 ERGKLVHAEAVKL--GLESDTVVATSLIGMYSKCGQVAEARTVFDKMS-NRDTVAWNAML 569

Query: 525 SACRNY-ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583
           +    + + L   +   + L    S N  +   + +  +  G+  + R +  MM+E + K
Sbjct: 570 AGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQE-DFK 628

Query: 584 KLP 586
             P
Sbjct: 629 MTP 631



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 124/484 (25%), Positives = 222/484 (45%), Gaps = 52/484 (10%)

Query: 101 KEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCL 160
           +EA+ +  ++   G+ V+  +   V++ C++    E+G  +H  L ++    D++L N L
Sbjct: 38  REAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSL 97

Query: 161 ISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNL 218
           I+ Y +   +  A Q+F +M +RD V+++SMI  Y  + +   A + F+ M     E N 
Sbjct: 98  INFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNR 157

Query: 219 ISWNSVL---NGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK 275
           I++ S+L   N Y+ L+ G +    +     E D+    +++    KCG++  A  +F K
Sbjct: 158 ITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHK 217

Query: 276 MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
           M +R+VVSW  +I   A+  +++ A  L+++M               ++ G S       
Sbjct: 218 MTERNVVSWTAIIQANAQHRKLNEAFELYEQM---------------LQAGIS------- 255

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
                     P+  + V +L++      +++G  IH ++ +     +     ALI MY K
Sbjct: 256 ----------PNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCK 305

Query: 396 CGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL-----AFDLLMEMERLSIEPDDI 450
           C S++ A ++F+++    V  W+AMI G A  G  +       F LL  M R  + P+ +
Sbjct: 306 CNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKV 365

Query: 451 TFTGLLNAC-AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE 509
           TF  +L AC AH  L +   +  EL +   +L+  LQ    + ++  + G I  A  +  
Sbjct: 366 TFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQ--TAIFNMYAKCGSIYEAEQVFS 423

Query: 510 DMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWND 569
            M    N V W + LS      +L+  E V      M + N  S+ L   M AG     D
Sbjct: 424 KMA-NKNVVAWTSFLSMYIKCGDLSSAEKVFSE---MPTRNVVSWNL---MIAGYAQNGD 476

Query: 570 ARRV 573
             +V
Sbjct: 477 IVKV 480



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 15/237 (6%)

Query: 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
           V+   A+    + G  +H+ L++    ++   G +LI+ YSK   + +A +VF ++    
Sbjct: 62  VIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRD 121

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE 473
           V  W++MI   A +     AFD    M   +IEP+ ITF  +L AC +  ++++G     
Sbjct: 122 VVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKG----- 176

Query: 474 LMRRIHK------LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSAC 527
             R+IH       +E ++     ++ +  + G I  A  +   M  E N V W  ++ A 
Sbjct: 177 --RKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMT-ERNVVSWTAIIQAN 233

Query: 528 RNYENLNVGEPVAKHLIGMD-SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583
             +  LN    + + ++    S N+ ++V L N        N  RR+ S + ER L+
Sbjct: 234 AQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLE 290


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 210/605 (34%), Positives = 328/605 (54%), Gaps = 56/605 (9%)

Query: 27  LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDP-- 84
            N +  IHAR++     ++ +L   ++       C  L +F    + K   F + K+P  
Sbjct: 29  FNQLKHIHARLLRLHLDQDNYLLNLIL-------CCAL-DFGSTNYSKL-VFSQVKEPNI 79

Query: 85  FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGL 144
           FLWN +I+         +A+ ++  M   G   + F+   VLKAC+R   +  GL+IH L
Sbjct: 80  FLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSL 139

Query: 145 LRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESA 204
           L K  +  D+F++  L+SLYV+C                                N + A
Sbjct: 140 LVKAGYDHDVFVKTSLLSLYVKCD-------------------------------NFDDA 168

Query: 205 RELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPER----DLISWNSMLHG 259
            ++FD +P  ++N++SW +++ GY  + SG  + A   F+K+ E     D  S   +L  
Sbjct: 169 LKVFDDIP--DKNVVSWTAIITGY--ISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAA 224

Query: 260 CVKCGKMDDAQ----ALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           C + G     +     + D    R+V    +++D Y K G ++ A  +F  MP++D+V+ 
Sbjct: 225 CARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSW 284

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           + M+ GY  NG   +AL++F  MQ E  L PD  ++V VLSA A LG +D G+     ++
Sbjct: 285 STMIQGYAFNGLPQQALDLFFQMQSE-NLKPDCYTMVGVLSACATLGALDLGIWASSLMD 343

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           +++F  N   G ALIDMYSKCGS+  A ++F  ++      WNAM+ GL+++G  +  F 
Sbjct: 344 RNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFS 403

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           L   +E+  I PD+ TF GLL  C H G V EG   F  M+R+  L P ++HYGCMVD+L
Sbjct: 404 LFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLL 463

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           GRAG +  A  LI +MPM+PN V+W  LL  C+ +++ ++ E V K LI ++  NS +YV
Sbjct: 464 GRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYV 523

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY 615
            LSN+++G   W +A ++RS MKE+ ++K+  CSWIE++G+VHEF V DKS      IY 
Sbjct: 524 QLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYA 583

Query: 616 MLDNM 620
            LD +
Sbjct: 584 KLDEL 588


>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
 gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
          Length = 894

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 192/588 (32%), Positives = 328/588 (55%), Gaps = 26/588 (4%)

Query: 17  TLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
            L++ R    +  V ++HA ++ +G     +  +K++ S++             + F + 
Sbjct: 314 ALVVTRSFVMMEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSD--------LVFAHK 365

Query: 77  AFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
            F + + P  FLWN +++  +    PK+A+V +    + G+  D  +   VLKAC++   
Sbjct: 366 VFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYA 425

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
            +EG Q+H  + K+ F  D+F+ N LI LY  CG L  AR +FD+M ++D VS+NS+I G
Sbjct: 426 PKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGG 485

Query: 195 YVKSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQLKSGLQFAWQIFEKMP------ 246
           Y +    +    LF+ M   E   + ++   V++    L       W + + M       
Sbjct: 486 YSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGD-----WSMADCMVRYIERN 540

Query: 247 --ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
             E D+   N+++    + G++  A+ +F +M  ++ V+   MI  YAK G +  A+++F
Sbjct: 541 HIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIF 600

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
           D++P +D+++ ++M+  Y +  +   +LE+F  MQ    + PD   +  VLSA A LG +
Sbjct: 601 DQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQ-RAKVKPDAVVIASVLSACAHLGAL 659

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
           D G  IH Y+ ++    +     +LIDM++KCG ++ A++VF ++E+     WN++I GL
Sbjct: 660 DLGKWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGL 719

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
           A +G  + A ++   M      P+++TF G+L ACA+  LV+EGL  FE M+ +H LEP+
Sbjct: 720 ANNGFEDEALNIFYSMLTEGPRPNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQ 779

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
           ++HYGC+V IL RAG +E A+N I +MP+ P+ V+WR LL AC+ + N+ V E   K L 
Sbjct: 780 MKHYGCVVGILSRAGQLEKAKNFINEMPLAPDPVVWRILLGACKTHGNVAVAEVATKKLS 839

Query: 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
            +D SNS  Y+LLSN++A    W+DA  VR  M +  ++K P CS ++
Sbjct: 840 ELDPSNSGDYMLLSNIYASADRWSDALNVRQWMADTAVRKSPACSVVD 887



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 116/317 (36%), Positives = 199/317 (62%), Gaps = 2/317 (0%)

Query: 276 MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
           MP ++VVSW  +I G+A  G ++ AR LFD+MP R+VV+   ++ GY R     +A+ +F
Sbjct: 1   MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
            +M     + P + +++ V+ AI+ LG I  G  +H Y  K     + + G +LID+Y+K
Sbjct: 61  RHMMAG-GISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAK 119

Query: 396 CGSIENAIKVFEQIEDG-SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTG 454
            GS++N++KVF+++ D  ++  W ++I+G A+HGL   A +L  EM R  I P+ ITF  
Sbjct: 120 IGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLS 179

Query: 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPME 514
           ++NAC+H GLV++GL  F+ M   + ++PE++H+GC++D+LGRAG +  A  +IE +P+E
Sbjct: 180 VINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVE 239

Query: 515 PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVR 574
            N ++WR LL  C  Y  + +G+   K +  ++  +   + +LSN+   LG ++DA + R
Sbjct: 240 VNVIVWRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQAR 299

Query: 575 SMMKERNLKKLPGCSWI 591
            ++ ER + K+PG + +
Sbjct: 300 KLLDERKIVKVPGLALV 316



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 116/483 (24%), Positives = 231/483 (47%), Gaps = 46/483 (9%)

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
           E+AR +F +       ++   W  +I  Y+      EA+ +F  M+  G+S  + +   V
Sbjct: 23  EYARLLFDQMPC----RNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPSEITVLAV 78

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM-GIRD 184
           + A S LG I  G  +HG   K    SD  + N LI LY + G ++ + ++FD+M   R+
Sbjct: 79  VPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRN 138

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSM---PIRERNLISWNSVLNGYAQ---LKSGLQ-F 237
            VS+ S+I G+   G    A ELF  M    IR  N I++ SV+N  +    ++ GL  F
Sbjct: 139 LVSWTSIISGFAMHGLSVEALELFAEMRRAGIRP-NRITFLSVINACSHGGLVEQGLAFF 197

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGR 296
              ++E   + ++  +  ++    + G++ +A+ + + +P + +V+ W  ++   +K G 
Sbjct: 198 KSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSKYGE 257

Query: 297 VDIARR---LFDEMPKR---DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
           V++ +R   +  ++ +    D    + ++    R   + +A ++ D  +  +   P  A 
Sbjct: 258 VEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLLDERK--IVKVPGLAL 315

Query: 351 LV----IVLSAIAQL-GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYS-KCGSIENAIK 404
           +V    +++ A+ +L  H+     +   L   Q++++      +I  Y+ +   +  A K
Sbjct: 316 VVTRSFVMMEAVKKLHAHL-----VVSGLHNCQYAMS-----KVIRSYALQQSDLVFAHK 365

Query: 405 VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL 464
           VFEQIE  +   WN ++ GLA     + A     + +   ++PD++TF  +L ACA    
Sbjct: 366 VFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYA 425

Query: 465 VKEGLLCFELMRRIHKLEPELQHY--GCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WR 521
            KEG    ++   + KL   L  +    ++ +    G +  AR++ ++M ++  DV+ W 
Sbjct: 426 PKEGE---QMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVK--DVVSWN 480

Query: 522 TLL 524
           +L+
Sbjct: 481 SLI 483



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 146/290 (50%), Gaps = 40/290 (13%)

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ--------- 230
           M +++ VS+N +I G+   G IE AR LFD MP   RN++SW  +++GY +         
Sbjct: 1   MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPC--RNVVSWTGLIDGYTRACLYAEAVA 58

Query: 231 -----LKSGLQ----FAWQIFEKMPERDLISWNSMLHG-CVKCGKMDDAQALFDKMPKRD 280
                +  G+         +   +     I    MLHG CVK G M DA+          
Sbjct: 59  LFRHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARV--------- 109

Query: 281 VVSWANMIDGYAKLGRVDIARRLFDEM-PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQ 339
                ++ID YAK+G V  + ++FDEM  +R++V+  +++ G+  +G S++ALE+F  M+
Sbjct: 110 ---GNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMR 166

Query: 340 CELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD-QFSLNGKHGVALIDMYSKCGS 398
               + P+  + + V++A +  G +++G+A  + +  +       KH   +IDM  + G 
Sbjct: 167 -RAGIRPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGR 225

Query: 399 IENAIKVFEQIE-DGSVDHWNAMINGLAIHG---LGELAFDLLMEMERLS 444
           +  A ++ E +  + +V  W  ++   + +G   +G+ A  ++ ++ER S
Sbjct: 226 LCEAEQIIEGLPVEVNVIVWRILLGCCSKYGEVEMGKRAIKMISDLERES 275


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 220/661 (33%), Positives = 344/661 (52%), Gaps = 82/661 (12%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           +IH   +  G+     +   L+A ++   C  L   AR +F       EK DP  WN+II
Sbjct: 169 EIHGVAVKCGYGGFVFVCNALIAMYAK--CGDLGG-ARVLFDS--GLMEKDDPVSWNSII 223

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
             +    +  EAL +F  M + GV  + ++    L+AC     I+ G  IH ++ K    
Sbjct: 224 SAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHF 283

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
           +D+++ N LI++Y  CG +E A ++F  M  +D VS+N+++ G V++     A   F  M
Sbjct: 284 TDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDM 343

Query: 212 PI------------------RERNLISW-------------------NSVLNGYAQLKSG 234
                               R  NL++                    NS+++ Y +    
Sbjct: 344 QDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKC-CC 402

Query: 235 LQFAWQIFEKMPERDLISWNSMLHG-----C----------VKCGKMDDAQALF------ 273
           +++    FE MPE+DLISW +++ G     C          V+  KMD    +       
Sbjct: 403 VKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLA 462

Query: 274 ------DKMPKR-----------DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
                 +K+ K            D++    +++ Y +L  VD AR +F+ +  +D+V+  
Sbjct: 463 CSGLKSEKLIKEIHGYVLKGGLADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWT 522

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
           +M+   V NG +++ALE+F+++  E  + PD  +LV VL A A L  + KG  IH +L +
Sbjct: 523 SMITCCVHNGLAIEALELFNSL-IETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIR 581

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
             F L G    +L+DMY++CG++ENA  +F  ++   +  W +MIN   +HG G+ A DL
Sbjct: 582 KGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDL 641

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
             +M   ++ PD ITF  LL AC+H+GLV EG   FE+M+  +KLEP  +HY C+VD+L 
Sbjct: 642 FSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLA 701

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556
           R+  +E A + + +MP+EP+  +W  LL ACR + N ++GE  AK L+ +++ NS +YVL
Sbjct: 702 RSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVL 761

Query: 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYM 616
           +SN FA  G WND   VRS+MK   LKK PGCSWIE+E  +H F  RDKS  Q  +IY  
Sbjct: 762 VSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMARDKSHPQCNNIYLK 821

Query: 617 L 617
           L
Sbjct: 822 L 822



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 135/517 (26%), Positives = 228/517 (44%), Gaps = 62/517 (11%)

Query: 25  KTLNDVNQIHARMI-TTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKD 83
           K L    Q+HA  + T  ++ +  L TK V  +    C    +  + +F K      ++ 
Sbjct: 60  KALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGK--CGSFYDAVK-VFDKM----SERT 112

Query: 84  PFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHG 143
            F WNA+I          EA+ ++  M   GVS+D F+   VLKAC        G +IHG
Sbjct: 113 IFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHG 172

Query: 144 LLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK--MGIRDSVSYNSMIDGYVKSGNI 201
           +  K  +G  +F+ N LI++Y +CG L  AR LFD   M   D VS+NS+I  +V  G  
Sbjct: 173 VAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGES 232

Query: 202 ESARELFDSMPI--RERNLISWNSVLN---GYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
             A  LF  M     E N  ++ S L    G   +K G      I +     D+   N++
Sbjct: 233 LEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNAL 292

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
           +     CG+M+DA+ +F  M  +D VSW                               N
Sbjct: 293 IAMYANCGQMEDAERVFKSMLFKDCVSW-------------------------------N 321

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
            ++ G V+N     A+  F +MQ +    PD  S++ +++A  +  ++  G+ +H Y  K
Sbjct: 322 TLLSGMVQNDMYSDAINHFQDMQ-DSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIK 380

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
                N   G +LIDMY KC  ++     FE + +  +  W  +I G A +     A +L
Sbjct: 381 HGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNL 440

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE-----PELQHYGCM 491
           L +++   ++ D +    +L AC+       GL   +L++ IH         ++     +
Sbjct: 441 LRKVQLEKMDVDPMMIGSILLACS-------GLKSEKLIKEIHGYVLKGGLADILIQNAI 493

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSAC 527
           V++ G    ++ AR++ E   +   D++ W ++++ C
Sbjct: 494 VNVYGELALVDYARHVFES--INSKDIVSWTSMITCC 528



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 12/164 (7%)

Query: 26  TLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPF 85
           +L    +IH  +I  GF     +   LV  ++   C  + E AR IF     + +++D  
Sbjct: 568 SLKKGKEIHGFLIRKGFFLEGLIANSLVDMYAR--CGTM-ENARNIF----NYVKQRDLI 620

Query: 86  LWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGL 144
           LW ++I     HG   K+A+ +F  M D  V  D  +   +L ACS  GL+ EG Q H  
Sbjct: 621 LWTSMINANGMHGCG-KDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQ-HFE 678

Query: 145 LRKVAFGSDLFLQN--CLISLYVRCGYLEFARQLFDKMGIRDSV 186
           + K  +  + + ++  CL+ L  R   LE A      M I  S 
Sbjct: 679 IMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSA 722


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 210/605 (34%), Positives = 328/605 (54%), Gaps = 56/605 (9%)

Query: 27  LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDP-- 84
            N +  IHAR++     ++ +L   ++       C  L +F    + K   F + K+P  
Sbjct: 29  FNQLKHIHARLLRLHLDQDNYLLNLIL-------CCAL-DFGSTNYSKL-VFSQVKEPNI 79

Query: 85  FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGL 144
           FLWN +I+         +A+ ++  M   G   + F+   VLKAC+R   +  GL+IH L
Sbjct: 80  FLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSL 139

Query: 145 LRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESA 204
           L K  +  D+F++  L+SLYV+C                                N + A
Sbjct: 140 LVKAGYDHDVFVKTSLLSLYVKCD-------------------------------NFDDA 168

Query: 205 RELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPER----DLISWNSMLHG 259
            ++FD +P  ++N++SW +++ GY  + SG  + A   F+K+ E     D  S   +L  
Sbjct: 169 LKVFDDIP--DKNVVSWTAIITGY--ISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAA 224

Query: 260 CVKCGKMDDAQ----ALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           C + G     +     + D    R+V    +++D Y K G ++ A  +F  MP++D+V+ 
Sbjct: 225 CARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSW 284

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           + M+ GY  NG   +AL++F  MQ E  L PD  ++V VLSA A LG +D G+     ++
Sbjct: 285 STMIQGYAFNGLPQQALDLFFQMQSE-NLKPDCYTMVGVLSACATLGALDLGIWASSLMD 343

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           +++F  N   G ALIDMYSKCGS+  A ++F  ++      WNAM+ GL+++G  +  F 
Sbjct: 344 RNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFS 403

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           L   +E+  I PD+ TF GLL  C H G V EG   F  M+R+  L P ++HYGCMVD+L
Sbjct: 404 LFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLL 463

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           GRAG +  A  LI +MPM+PN V+W  LL  C+ +++ ++ E V K LI ++  NS +YV
Sbjct: 464 GRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYV 523

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY 615
            LSN+++G   W +A ++RS MKE+ ++K+  CSWIE++G+VHEF V DKS      IY 
Sbjct: 524 QLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYA 583

Query: 616 MLDNM 620
            LD +
Sbjct: 584 KLDEL 588


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 201/597 (33%), Positives = 324/597 (54%), Gaps = 79/597 (13%)

Query: 61  CTPLTEFARYIFFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVD 118
           C P   F   + +    F   ++P   +WN +I+ ++   DP  +L ++  M+  G+  +
Sbjct: 5   CVPSPHFDG-LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPN 63

Query: 119 KFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD 178
            ++   +LK+C++     EG QIHG + K+ F  DL++   LIS+YV             
Sbjct: 64  SYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYV------------- 110

Query: 179 KMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFA 238
                             ++  +E A ++FD      R+++S+ +++ GYA  +  ++ A
Sbjct: 111 ------------------QNWRLEDAYKVFDRS--SHRDVVSYTALITGYAS-RGDIRSA 149

Query: 239 WQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK-------------------- 278
            ++F+++P +D++SWN+M+ G  + G   +A  LF++M K                    
Sbjct: 150 QKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHS 209

Query: 279 ------RDVVSWAN-------------MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM 319
                 R V SW +             +ID Y+K G V+ A  LF  +  +DV++ N ++
Sbjct: 210 GSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLI 269

Query: 320 GGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF 379
           GGY       +AL +F  M       P+D +++ VL A A LG ID G  IH Y++K   
Sbjct: 270 GGYTHMNLYKEALLLFQEM-LRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLK 328

Query: 380 SLNGKHGV--ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLL 437
            +     +  +LIDMY+KCG IE A +VF  +   S+  WNAMI G A+HG  + +FDL 
Sbjct: 329 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLF 388

Query: 438 MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
             M ++ IEPDDITF GLL+AC+H+G++  G   F  M + +K+ P+L+HYGCM+D+LG 
Sbjct: 389 SRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGH 448

Query: 498 AGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557
           +G  + A  +I  M MEP+ VIW +LL AC+ + N+ + E  A++LI ++  N SSY+LL
Sbjct: 449 SGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEPENPSSYILL 508

Query: 558 SNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           SN++A  G W D  R+R+++  + +KK+PGCS IE++ VV EF V DK   Q R+IY
Sbjct: 509 SNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFVVGDKFHPQNREIY 565



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 132/483 (27%), Positives = 218/483 (45%), Gaps = 73/483 (15%)

Query: 19  LLLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSS----------------- 58
            LL+ C   KT  +  QIH +++  GF  + ++ T L++ +                   
Sbjct: 69  FLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHR 128

Query: 59  ---SPCTPLTEFARY--IFFKYHAFRE--KKDPFLWNAIIKTYSHGLDPKEALVMFCLML 111
              S    +T +A    I      F E   KD   WNA+I  Y+     KEAL +F  M+
Sbjct: 129 DVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMM 188

Query: 112 DNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLE 171
              V  D+ +   VL AC+  G IE G Q+H  +    F S+L + N LI LY +CG +E
Sbjct: 189 KMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVE 248

Query: 172 FARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQL 231
            A  LF  +  +D +S+N++I GY      + A  LF  M                   L
Sbjct: 249 TACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM-------------------L 289

Query: 232 KSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR--DVVSWANM-- 287
           +SG         + P    ++  S+L  C   G +D  + +   + KR   V + +++  
Sbjct: 290 RSG---------ETPND--VTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRT 338

Query: 288 --IDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLH 345
             ID YAK G ++ A ++F+ M  + + + NAM+ G+  +G +  + ++F  M+ ++ + 
Sbjct: 339 SLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMR-KIGIE 397

Query: 346 PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD-QFSLNGKHGVALIDMYSKCG---SIEN 401
           PDD + V +LSA +  G +D G  I R + +D + +   +H   +ID+    G     E 
Sbjct: 398 PDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEE 457

Query: 402 AIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLL-NACA 460
            I   E   DG +  W +++    +HG  ELA      +  + IEP++ +   LL N  A
Sbjct: 458 MINTMEMEPDGVI--WCSLLKACKMHGNVELAESFAQNL--IKIEPENPSSYILLSNIYA 513

Query: 461 HAG 463
            AG
Sbjct: 514 SAG 516


>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
 gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
          Length = 565

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 196/582 (33%), Positives = 327/582 (56%), Gaps = 47/582 (8%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           S  S   LL+ CKT  D++Q+HA +I  G  +++ L T+ +++ +S           +I 
Sbjct: 28  SLYSISALLKLCKTHIDLHQVHAHLIQKGLEQDSFLVTQFISASNS---------VAHIS 78

Query: 73  FKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS 130
           +    F     P  FLWN+++  Y   L   + + ++  M     + D+++   +LK C+
Sbjct: 79  YSTSVFDRVLSPSTFLWNSLVSGYCAKLQFVDIISLYVRMKREDGAPDRYTFPSLLKVCA 138

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
             G + EG+ +HG + +     D+++   L++LY                          
Sbjct: 139 SEGKMMEGMALHGSILRCGVDEDIYVTTSLVNLYG------------------------- 173

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL 250
                 K G I+ AR++FD M   ERN++SW +++ GY+ + + ++ A ++F+ MPER++
Sbjct: 174 ------KGGLIDCARKVFDGMS--ERNVVSWTAMIVGYSSIGNLVE-AKRLFDLMPERNV 224

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
            SWN+++ G +K G +  A+  FD+MP+++VVS+  MIDGYAK G +  AR LF + P+R
Sbjct: 225 ASWNAIIGGYMKMGDVKSAEKAFDEMPEKNVVSFTTMIDGYAKAGDMLSARNLFQKAPER 284

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
           D++A +A++ GY +NG   +A++ F  M     + PD   L  ++ A +QLG++D    +
Sbjct: 285 DIIAWSALISGYTQNGQPNEAVKTFLEMSSR-NVKPDKFVLTSLMLACSQLGNLDLAKWV 343

Query: 371 HRYLEKDQFSLNGKH-GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
             Y  +    L G H   ALIDM +KCG++E A+ +FE++    +  + +++ GL+IHG 
Sbjct: 344 DSYATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLFEKMPKRDLISYCSVMQGLSIHGH 403

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
           G+ A  L   M    + PDD+ FT +L AC+ AGLV EG   FE+MR  + + P + HY 
Sbjct: 404 GDQAVSLFERMLGEDLTPDDVAFTVILTACSRAGLVDEGWHYFEMMRCKYSMVPSVDHYA 463

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549
           C+VD+L R+G ++ A  LI+ +P++ +   W  LL AC+ Y +  + E VA  LI ++  
Sbjct: 464 CIVDLLSRSGRLKEAYELIKSVPVQSHAGAWGALLGACKLYCDSELAEVVASRLIEIEPE 523

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           N+ +YVLLSN++A    W D   VR+ M ER L+K+PGCSWI
Sbjct: 524 NAGNYVLLSNIYAAADRWLDVSAVRNQMNERGLRKIPGCSWI 565


>gi|302142752|emb|CBI19955.3| unnamed protein product [Vitis vinifera]
          Length = 488

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 190/504 (37%), Positives = 290/504 (57%), Gaps = 41/504 (8%)

Query: 115 VSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY-LEFA 173
           V  + F+ + +LK       +E+G  IHG + K+ FGS +F+QN L+  Y  C   L  A
Sbjct: 6   VEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSLLGFYANCSENLGSA 65

Query: 174 RQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKS 233
            ++F++M  RD +S+NSMI  Y+  G I+SA  L D MP  ERN+++WNSV+ G ++   
Sbjct: 66  YRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMP--ERNIVTWNSVVCGLSK-AG 122

Query: 234 GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAK 293
            ++ A  +FE+MP R+ +SWNSM+ G V+ G +  AQ++F +MP++ VVSW  MI GYA 
Sbjct: 123 NMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYAT 182

Query: 294 LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI 353
            G +  A  +F+ MP ++VV+ NAM+ GYV N    +AL +F +M       PD  +L+ 
Sbjct: 183 NGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLIS 242

Query: 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
           +LSA A LG ++ G  I+ Y++K++  L+   G ALIDM++KCG +ENA +VF  +    
Sbjct: 243 ILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRC 302

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE 473
           +  W  M++GLA++G    A +L  +M     +PDD+ F  +L+AC H GLV+EG   F+
Sbjct: 303 IITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFD 362

Query: 474 LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENL 533
            M +   ++P ++HYGCMVD+LGRAG +E A+     M  EP                  
Sbjct: 363 QMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAK----IMDQEP------------------ 400

Query: 534 NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
                          SN S   L+SN+ A  G W D    R  M+++ ++K+PGCS I++
Sbjct: 401 ---------------SNPSYLTLVSNLSASFGRWEDVLSFRVAMRQQRMEKVPGCSSIQV 445

Query: 594 EGVVHEFFVRDKSRLQVRDIYYML 617
              VHEF  +D   +Q ++IY  L
Sbjct: 446 GNRVHEFLAKDTRHVQRKEIYRAL 469



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 106/233 (45%), Gaps = 37/233 (15%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG-VSVDKFSASLVLKACSRLGLIEEGLQ 140
           K+   WNA+I  Y H  +  +AL +F  ML NG    D+ +   +L AC+ LG +E G  
Sbjct: 199 KNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKW 258

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           I+  ++K      + L N LI ++ +CG +E A+++F  M  R  +++ +M+ G   +G 
Sbjct: 259 INSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGK 318

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
              A  LFD M                               E     D+I + ++L  C
Sbjct: 319 CREAINLFDKM-----------------------------CLEGTKPDDVI-FIAVLSAC 348

Query: 261 VKCGKMDDAQALFDKMP-----KRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
              G +++ + +FD+M      K  +  +  M+D   + G+++ A ++ D+ P
Sbjct: 349 THGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEA-KIMDQEP 400


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 195/533 (36%), Positives = 305/533 (57%), Gaps = 16/533 (3%)

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           ARY+F K      +++   WN +I  Y       EA   F  M +  V     S + +++
Sbjct: 66  ARYLFDKM----PERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNV----VSWTAMVR 117

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
              + GL+ E   +   + +     ++     ++   ++   ++ AR LFD M ++D V+
Sbjct: 118 GYVQEGLVSEAETLFWQMPE----KNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVA 173

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
             +MI GY + G +  ARELFD MP   RN+ISW ++++GY Q    +  A ++FE MPE
Sbjct: 174 RTNMISGYCQEGRLAEARELFDEMP--RRNVISWTTMISGYVQ-NGQVDVARKLFEVMPE 230

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
           ++ +SW +ML G  + G++++A  LFD MP + VV+   MI G+ + G V  AR++FD++
Sbjct: 231 KNEVSWTAMLMGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQI 290

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
            ++D    +AM+  Y R G+ ++AL +F  MQ E  +  +  SL+ VLS  A L  +D G
Sbjct: 291 REKDDGTWSAMIKVYERKGFEVEALNLFALMQRE-GVQSNFPSLISVLSVCASLASLDHG 349

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
             +H  L K QF  +      LI MY KCG +  A ++F++     +  WN++I G A H
Sbjct: 350 RQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQH 409

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           GL E A  +  EM    +  D +TF G+L+AC++ G VKEGL  FE M+  + +EP+ +H
Sbjct: 410 GLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEH 469

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
           Y CMVD+LGRAG +  A +LI+ MP+E + +IW  LL ACR + N+N+ E  AK L+ ++
Sbjct: 470 YACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLE 529

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
             N+  Y+LLSN++A  G W D   +R  M+ + + K PGCSWIE+E  VH F
Sbjct: 530 PKNAGPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMF 582



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 112/321 (34%), Positives = 179/321 (55%), Gaps = 18/321 (5%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN 217
           N  I+ Y R G +E AR++FD+M  +  VS+NSM+ GY ++     AR LFD MP  ERN
Sbjct: 20  NSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMP--ERN 77

Query: 218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP 277
            +SWN +++GY + +  +  A + F+ MPER+++SW +M+ G V+ G + +A+ LF +MP
Sbjct: 78  TVSWNGLISGYVKNRM-VSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMP 136

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
           +++VVSW  M+ G  ++ R+D AR LFD MP +DVVA   M+ GY + G   +A E+FD 
Sbjct: 137 EKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDE 196

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL-EKDQFSLNGKHGVALIDMYSKC 396
           M        +  S   ++S   Q G +D    +   + EK++ S       A++  Y++ 
Sbjct: 197 MP-----RRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWT-----AMLMGYTQG 246

Query: 397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLL 456
           G IE A ++F+ +   +V   NAMI G   +G    A  +  ++     E DD T++ ++
Sbjct: 247 GRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIR----EKDDGTWSAMI 302

Query: 457 NACAHAGLVKEGLLCFELMRR 477
                 G   E L  F LM+R
Sbjct: 303 KVYERKGFEVEALNLFALMQR 323



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 157/309 (50%), Gaps = 26/309 (8%)

Query: 219 ISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK 278
           I++NS +  YA++   ++ A ++F++MP++ ++SWNSM+ G  +  +  +A+ LFDKMP+
Sbjct: 17  IAYNSQIARYARIGQ-IESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPE 75

Query: 279 RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM 338
           R+ VSW  +I GY K   V  AR+ FD MP+R+VV+  AM+ GYV+ G   +A  +F  M
Sbjct: 76  RNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQM 135

Query: 339 QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE-KDQFSLNGKHGVALIDMYSKCG 397
                   +  S  ++L  + Q+  ID+   +   +  KD  +        +I  Y + G
Sbjct: 136 P-----EKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTN-----MISGYCQEG 185

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            +  A ++F+++   +V  W  MI+G   +G  ++A  L   M     E +++++T +L 
Sbjct: 186 RLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMP----EKNEVSWTAMLM 241

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL--GRAGHIEAARNLIEDMPMEP 515
                G ++E    F+ M       P      C   IL  G+ G +  AR +  D   E 
Sbjct: 242 GYTQGGRIEEASELFDAM-------PVKAVVACNAMILGFGQNGEVAKARQVF-DQIREK 293

Query: 516 NDVIWRTLL 524
           +D  W  ++
Sbjct: 294 DDGTWSAMI 302


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 213/627 (33%), Positives = 335/627 (53%), Gaps = 32/627 (5%)

Query: 19  LLLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
            + + C  ++ V      HA  + TGFI N  +   LVA +S   C  L++ AR +F + 
Sbjct: 132 FVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSR--CRSLSD-ARKVFDEM 188

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDN-GVSVDKFSASLVLKACSRLGL 134
             +    D   WN+II++Y+    PK AL MF  M +  G   D  +   VL  C+ LG 
Sbjct: 189 SVW----DVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGT 244

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
              G Q+H          ++F+ NCL+ +Y +CG ++ A  +F  M ++D VS+N+M+ G
Sbjct: 245 HSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAG 304

Query: 195 YVKSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQLKSG---LQFAWQIFEKMPERD 249
           Y + G  E A  LF+ M   +   ++++W++ ++GYAQ   G   L    Q+     + +
Sbjct: 305 YSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPN 364

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN-----------MIDGYAKLGRVD 298
            ++  S+L GC   G +   + +     K  +    N           +ID YAK  +VD
Sbjct: 365 EVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVD 424

Query: 299 IARRLFDEM-PK-RDVVACNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVL 355
            AR +FD + PK RDVV    M+GGY ++G + KALE+   M + +    P+  ++   L
Sbjct: 425 TARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCAL 484

Query: 356 SAIAQLGHIDKGVAIHRY-LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
            A A L  +  G  IH Y L   Q ++       LIDMY+KCGSI +A  VF+ +   + 
Sbjct: 485 VACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNE 544

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
             W +++ G  +HG GE A  +  EM R+  + D +T   +L AC+H+G++ +G+  F  
Sbjct: 545 VTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNR 604

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534
           M+ +  + P  +HY C+VD+LGRAG + AA  LIE+MPMEP  V+W   LS CR +  + 
Sbjct: 605 MKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVE 664

Query: 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           +GE  A+ +  + S++  SY LLSN++A  G W D  R+RS+M+ + +KK PGCSW+E  
Sbjct: 665 LGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGI 724

Query: 595 GVVHEFFVRDKSRLQVRDIY-YMLDNM 620
                FFV DK+    ++IY  +LD+M
Sbjct: 725 KGTTTFFVGDKTHPHAKEIYQVLLDHM 751



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 167/543 (30%), Positives = 266/543 (48%), Gaps = 43/543 (7%)

Query: 12  NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPC-----TPLTE 66
           ++ + T   + KCKT++ V  IH ++++ G I   +LT+ L++++ S  C     + L  
Sbjct: 26  SAPEITPPFIHKCKTISQVKLIHQKLLSFG-ILTLNLTSHLISTYISVGCLSHAVSLLRR 84

Query: 67  FARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVL 126
           F       YH          WN++I++Y       + L +F LM     + D ++   V 
Sbjct: 85  FPPSDAGVYH----------WNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVF 134

Query: 127 KACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSV 186
           KAC  +  +  G   H L     F S++F+ N L+++Y RC  L  AR++FD+M + D V
Sbjct: 135 KACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVV 194

Query: 187 SYNSMIDGYVKSGNIESARELFDSMP----IRERNLISWNSVLNGYAQLKS-GLQFAWQI 241
           S+NS+I+ Y K G  + A E+F  M      R  N I+  +VL   A L +  L      
Sbjct: 195 SWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDN-ITLVNVLPPCASLGTHSLGKQLHC 253

Query: 242 FEKMPE--RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDI 299
           F    E  +++   N ++    KCG MD+A  +F  M  +DVVSW  M+ GY+++GR + 
Sbjct: 254 FAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFED 313

Query: 300 ARRLFDEMP----KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
           A RLF++M     K DVV  +A + GY + G   +AL +   M     + P++ +L+ VL
Sbjct: 314 AVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSS-GIKPNEVTLISVL 372

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSL--NGKHG------VALIDMYSKCGSIENAIKVFE 407
           S  A +G +  G  IH Y  K    L  NG HG        LIDMY+KC  ++ A  +F+
Sbjct: 373 SGCASVGALMHGKEIHCYAIKYPIDLRKNG-HGDENMVINQLIDMYAKCKKVDTARAMFD 431

Query: 408 QI--EDGSVDHWNAMINGLAIHGLGELAFDLLMEM--ERLSIEPDDITFTGLLNACAHAG 463
            +  ++  V  W  MI G + HG    A +LL EM  E     P+  T +  L ACA   
Sbjct: 432 SLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLA 491

Query: 464 LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTL 523
            ++ G        R  +    L    C++D+  + G I  AR + ++M M  N+V W +L
Sbjct: 492 ALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNM-MAKNEVTWTSL 550

Query: 524 LSA 526
           ++ 
Sbjct: 551 MTG 553


>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
           [Vitis vinifera]
 gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 207/592 (34%), Positives = 324/592 (54%), Gaps = 42/592 (7%)

Query: 37  MITTGFIKNTHLTTKLVASFSS-SPCTPLTEFARYIFFKYHAFREKK---DPFLWNAIIK 92
           M+      N +L TK +A+ SS +   PL +    I      F  +    D FL N++IK
Sbjct: 1   MLRNALETNPNLFTKFIATCSSIALLAPLYDPLAGIVHARRMFDHRPHRDDAFLCNSMIK 60

Query: 93  TYSHGLDPKEALVMFC-LMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
            Y       E+  ++  L  +   + D F+ S++ K+C+    I EG +IH  +  V F 
Sbjct: 61  AYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFC 120

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
            DL+                               +  +++D Y K G ++ AR+LFD M
Sbjct: 121 LDLY-------------------------------AATALVDMYAKFGKMDCARKLFDEM 149

Query: 212 PIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQ 270
              +R+ +SW +++ GY  ++SG +  A ++F++M E+D  ++N+M+   VK G M  A+
Sbjct: 150 I--DRSQVSWTALIGGY--VRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKLGDMCSAR 205

Query: 271 ALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMK 330
            LFD+MP+R VVSW  MI GY+  G +D AR LFD MP++++ + NAM+ GY +N    +
Sbjct: 206 KLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYRQNKQPYE 265

Query: 331 ALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI 390
           AL++F  MQ    L PD+ ++V VL AIA LG +D G  +HR++ + +       G ALI
Sbjct: 266 ALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALI 325

Query: 391 DMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
           DMY+KCG I  +  VF+ + +     WNA+IN  AI+G  + A  L MEM      P++I
Sbjct: 326 DMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEI 385

Query: 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIED 510
           T  G+L+AC H+GLV+EG   F+ M     L P+++HYGCMVD+LGRAG ++ A  L+E 
Sbjct: 386 TMIGVLSACNHSGLVEEGKRWFKAMEEF-GLTPKIEHYGCMVDLLGRAGCLQEAEKLMES 444

Query: 511 MPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDA 570
           MP E N +I  + L AC   +++   E V K  I M++ N  +Y++L N++A    W +A
Sbjct: 445 MPYEANGIILSSFLFACGYSKDVARAERVLKEAIKMEAWNDGNYIMLRNLYANEKRWKEA 504

Query: 571 RRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWT 622
             V+ +M+   +KK  GCS IE++  V EF   D+   +   I+ +L  +W 
Sbjct: 505 DEVKGLMRRNGVKKEAGCSAIEVDSRVWEFVAGDRVHPKWEAIHSVLGQLWV 556



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 110/409 (26%), Positives = 192/409 (46%), Gaps = 69/409 (16%)

Query: 17  TLLLLRKCKTLN----DVNQIHARMITTGFIKNTHLTTKLV---ASFSSSPCTPLTEFAR 69
           T  +L K   LN    +  +IH+ ++  GF  + +  T LV   A F    C      AR
Sbjct: 90  TFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDC------AR 143

Query: 70  YIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKAC 129
            +F +       +    W A+I  Y    D   A  +F  M      ++K SA+      
Sbjct: 144 KLFDEMI----DRSQVSWTALIGGYVRSGDMDNAGKLFDQM------IEKDSAAF----- 188

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
                                       N +I  YV+ G +  AR+LFD+M  R  VS+ 
Sbjct: 189 ----------------------------NTMIDAYVKLGDMCSARKLFDEMPERSVVSWT 220

Query: 190 SMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP--- 246
            MI GY  +GN++SAR LFD+MP  E+NL SWN++++GY Q K   + A ++F +M    
Sbjct: 221 IMIYGYSSNGNLDSARSLFDAMP--EKNLFSWNAMISGYRQNKQPYE-ALKLFHEMQSTT 277

Query: 247 --ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN----MIDGYAKLGRVDIA 300
             E D ++  S+L      G +D    +   + ++ +    N    +ID YAK G +  +
Sbjct: 278 SLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKS 337

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
           R +FD MP+++  + NA++  +  NG + +AL +F  M  + ++ P++ +++ VLSA   
Sbjct: 338 RGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFM-PNEITMIGVLSACNH 396

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
            G +++G    + +E+   +   +H   ++D+  + G ++ A K+ E +
Sbjct: 397 SGLVEEGKRWFKAMEEFGLTPKIEHYGCMVDLLGRAGCLQEAEKLMESM 445


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 204/564 (36%), Positives = 314/564 (55%), Gaps = 31/564 (5%)

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLD-NGVSVDKF---- 120
           E AR +F +       K+   WN+I+  Y     P+EA  MF  M + N +S +      
Sbjct: 115 EKARVVFDEMR----DKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGY 170

Query: 121 -------SASLVLKACSRLGLIEEGLQIHGLLRK--VAFGSDLFLQ---------NCLIS 162
                   A  V        ++     + G +++  ++    LF Q           ++ 
Sbjct: 171 INNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLG 230

Query: 163 LYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWN 222
             ++ G ++ A +LFD M  +D V+  +MI GY + G +  AR LFD MP   RN++SW 
Sbjct: 231 GLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMP--RRNVVSWT 288

Query: 223 SVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV 282
           +++ GY Q    +  A ++FE MPE++ +SW +ML G   CG++D+A  LF+ MP + VV
Sbjct: 289 TMITGYVQ-NQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVV 347

Query: 283 SWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
           +   MI  + + G V  AR++FD+M ++D    +AM+  Y R G  + ALE+F  MQ E 
Sbjct: 348 ACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQRE- 406

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENA 402
            + P+  SL+ VLS  A L ++D G  IH  L + QF L+      L+ MY KCG++  A
Sbjct: 407 GIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKA 466

Query: 403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
            +VF++     V  WN++I G A HGLG  A  +  +M    I PDD+TF G+L+AC++ 
Sbjct: 467 KQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYT 526

Query: 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRT 522
           G VK+GL  F  M   +++E +++HY CMVD+LGRAG +  A +LIE MPME + +IW  
Sbjct: 527 GNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGA 586

Query: 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
           LL ACR +  L++ E  AK L+ ++  N+  ++LLSN++A  G W+D   +R  M++R +
Sbjct: 587 LLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRV 646

Query: 583 KKLPGCSWIELEGVVHEFFVRDKS 606
            K PGCSWI +E  VH+F   D S
Sbjct: 647 SKYPGCSWIVVEKKVHKFTGGDSS 670



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 121/405 (29%), Positives = 219/405 (54%), Gaps = 34/405 (8%)

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
           SRLG IE+   +   +R      ++   N +++ Y +    + A+ +FDKM  R+++S+N
Sbjct: 109 SRLGQIEKARVVFDEMRD----KNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTISWN 164

Query: 190 SMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPER 248
            ++ GY+ +G I  ARE+FD MP  ERN++SW +++ GY  +K G+   A  +F +MPE+
Sbjct: 165 GLVSGYINNGMINEAREVFDRMP--ERNVVSWTAMVRGY--VKEGMISEAETLFWQMPEK 220

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           +++SW  ML G ++ G++D+A  LFD MP++DVV+  NMI GY ++GR+  AR LFDEMP
Sbjct: 221 NVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMP 280

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
           +R+VV+   M+ GYV+N     A ++F+ M        ++ S   +L      G +D+  
Sbjct: 281 RRNVVSWTTMITGYVQNQQVDIARKLFEVMP-----EKNEVSWTAMLKGYTNCGRLDEAS 335

Query: 369 AIHRYLE-KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
            +   +  K   + N     A+I  + + G +  A +VF+Q+ +     W+AMI      
Sbjct: 336 ELFNAMPIKSVVACN-----AMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERK 390

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH------KL 481
           GL   A +L   M+R  I P+  +   +L+ CA       GL   +  R IH      + 
Sbjct: 391 GLELDALELFRMMQREGIRPNFPSLISVLSVCA-------GLANLDHGREIHAQLVRSQF 443

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           + ++     ++ +  + G++  A+ + +   ++ + V+W ++++ 
Sbjct: 444 DLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVK-DVVMWNSIITG 487



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 178/362 (49%), Gaps = 24/362 (6%)

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM 245
           +S NS+I  Y + G IE AR +FD M  R++N+ISWNS++ GY Q K   Q A  +F+KM
Sbjct: 99  ISRNSLITRYSRLGQIEKARVVFDEM--RDKNIISWNSIVAGYFQNKRP-QEAQNMFDKM 155

Query: 246 PERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFD 305
            ER+ ISWN ++ G +  G +++A+ +FD+MP+R+VVSW  M+ GY K G +  A  LF 
Sbjct: 156 SERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFW 215

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
           +MP+++VV+   M+GG ++ G   +A  +FD M        D  +   ++    Q+G + 
Sbjct: 216 QMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMP-----EKDVVTRTNMIGGYCQVGRLV 270

Query: 366 KGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
           +     R L  +    N      +I  Y +   ++ A K+FE + + +   W AM+ G  
Sbjct: 271 EA----RMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYT 326

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL 485
             G  + A +L   M   S+    +    ++      G V +    F+ MR     E + 
Sbjct: 327 NCGRLDEASELFNAMPIKSV----VACNAMILCFGQNGEVPKARQVFDQMR-----EKDE 377

Query: 486 QHYGCMVDILGRAGHIEAARNLIEDMPME---PNDVIWRTLLSACRNYENLNVGEPVAKH 542
             +  M+ +  R G    A  L   M  E   PN     ++LS C    NL+ G  +   
Sbjct: 378 GTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQ 437

Query: 543 LI 544
           L+
Sbjct: 438 LV 439



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 125/280 (44%), Gaps = 50/280 (17%)

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
           +IS NS++    + G+++ A+ +FD+M  ++++SW +++ GY +  R   A+ +FD+M +
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           R+ ++ N ++ GY+ NG   +A E+FD M                               
Sbjct: 158 RNTISWNGLVSGYINNGMINEAREVFDRMP------------------------------ 187

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
                E++  S       A++  Y K G I  A  +F Q+ + +V  W  M+ GL   G 
Sbjct: 188 -----ERNVVSW-----TAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGR 237

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
            + A  L   M     E D +T T ++      G + E  + F+ M R +     +  + 
Sbjct: 238 IDEACRLFDMMP----EKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRN-----VVSWT 288

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRN 529
            M+    +   ++ AR L E MP E N+V W  +L    N
Sbjct: 289 TMITGYVQNQQVDIARKLFEVMP-EKNEVSWTAMLKGYTN 327


>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Glycine max]
          Length = 566

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 211/581 (36%), Positives = 322/581 (55%), Gaps = 42/581 (7%)

Query: 12  NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
           +S  S   LL+ CK    + Q+HA +I  G ++  H    L  S + +  + L+ +A  +
Sbjct: 27  HSAASITTLLKACKKREHLEQVHACIIHRG-LEQDHFLVFLFISRAHTLLSTLS-YASSV 84

Query: 72  FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
           F +  A        LWN +IK++         L  F  M  +G   D F+   V+KACS 
Sbjct: 85  FHRVLA----PSTVLWNTLIKSHCQKNLFSHTLSAFARMKAHGALPDSFTYPSVIKACSG 140

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
                EG  +HG   +     DL++   LI +Y +C                        
Sbjct: 141 TCKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKC------------------------ 176

Query: 192 IDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI 251
                  G I  AR++FD M   +RN++SW ++L GY  +   ++ A ++F++MP R++ 
Sbjct: 177 -------GEIADARKVFDGM--SDRNVVSWTAMLVGYVAVGDVVE-ARKLFDEMPHRNVA 226

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           SWNSML G VK G +  A+ +FD MP+++VVS+  MIDGYAK G +  AR LFD   ++D
Sbjct: 227 SWNSMLQGFVKMGDLSGARGVFDAMPEKNVVSFTTMIDGYAKAGDMAAARFLFDCSLEKD 286

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           VVA +A++ GYV+NG   +AL +F  M+  + + PD+  LV ++SA AQLGH++    + 
Sbjct: 287 VVAWSALISGYVQNGLPNQALRVFLEMEL-MNVKPDEFILVSLMSASAQLGHLELAQWVD 345

Query: 372 RYLEKDQFSLNGKHGVA-LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
            Y+ K    L   H +A L+DM +KCG++E A+K+F++     V  + +MI GL+IHG G
Sbjct: 346 SYVSKICIDLQQDHVIAALLDMNAKCGNMERALKLFDEKPRRDVVLYCSMIQGLSIHGRG 405

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
           E A +L   M    + PD++ FT +L AC+ AGLV EG   F+ M++ + + P   HY C
Sbjct: 406 EEAVNLFNRMLMEGLTPDEVAFTVILTACSRAGLVDEGRNYFQSMKQKYCISPLPDHYAC 465

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           MVD+L R+GHI  A  LI+ +P EP+   W  LL AC+ Y +  +GE VA  L  ++  N
Sbjct: 466 MVDLLSRSGHIRDAYELIKLIPWEPHAGAWGALLGACKLYGDSELGEIVANRLFELEPLN 525

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           +++YVLLS+++A    W D   VRS M+ER ++K+PG S I
Sbjct: 526 AANYVLLSDIYAAAERWIDVSLVRSKMRERRVRKIPGSSKI 566


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 204/564 (36%), Positives = 315/564 (55%), Gaps = 31/564 (5%)

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLD-NGVSVDKF---- 120
           E AR +F +       K+   WN+I+  Y     P+EA  MF  M + N +S +      
Sbjct: 115 EKARVVFDEMR----DKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGY 170

Query: 121 -------SASLVLKACSRLGLIEEGLQIHGLLRK--VAFGSDLFLQ---------NCLIS 162
                   A  V        ++     + G +++  ++    LF Q           ++ 
Sbjct: 171 INNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLG 230

Query: 163 LYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWN 222
             ++ G ++ A +LFD M  +D V+  +MI GY + G +  AR LFD MP   RN++SW 
Sbjct: 231 GLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMP--RRNVVSWT 288

Query: 223 SVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV 282
           +++ GY Q +  +  A ++FE MPE++ +SW +ML G   CG++D+A  LF+ MP + VV
Sbjct: 289 TMITGYVQNQQ-VDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVV 347

Query: 283 SWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
           +   MI  + + G V  AR++FD+M ++D    +AM+  Y R G  + ALE+F  MQ E 
Sbjct: 348 ACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQRE- 406

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENA 402
            + P+  SL+ VLS  A L ++D G  IH  L + QF L+      L+ MY KCG++  A
Sbjct: 407 GIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKA 466

Query: 403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
            +VF++     V  WN++I G A HGLG  A  +  +M    I PDD+TF G+L+AC++ 
Sbjct: 467 KQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYT 526

Query: 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRT 522
           G VK+GL  F  M   +++E +++HY CMVD+LGRAG +  A +LIE MPME + +IW  
Sbjct: 527 GNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGA 586

Query: 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
           LL ACR +  L++ E  AK L+ ++  N+  ++LLSN++A  G W+D   +R  M++R +
Sbjct: 587 LLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRV 646

Query: 583 KKLPGCSWIELEGVVHEFFVRDKS 606
            K PGCSWI +E  VH+F   D S
Sbjct: 647 SKYPGCSWIVVEKKVHKFTGGDSS 670



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 121/405 (29%), Positives = 219/405 (54%), Gaps = 34/405 (8%)

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
           SRLG IE+   +   +R      ++   N +++ Y +    + A+ +FDKM  R+++S+N
Sbjct: 109 SRLGQIEKARVVFDEMRD----KNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTISWN 164

Query: 190 SMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPER 248
            ++ GY+ +G I  ARE+FD MP  ERN++SW +++ GY  +K G+   A  +F +MPE+
Sbjct: 165 GLVSGYINNGMINEAREVFDRMP--ERNVVSWTAMVRGY--VKEGMISEAETLFWQMPEK 220

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           +++SW  ML G ++ G++D+A  LFD MP++DVV+  NMI GY ++GR+  AR LFDEMP
Sbjct: 221 NVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMP 280

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
           +R+VV+   M+ GYV+N     A ++F+ M        ++ S   +L      G +D+  
Sbjct: 281 RRNVVSWTTMITGYVQNQQVDIARKLFEVMP-----EKNEVSWTAMLKGYTNCGRLDEAS 335

Query: 369 AIHRYLE-KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
            +   +  K   + N     A+I  + + G +  A +VF+Q+ +     W+AMI      
Sbjct: 336 ELFNAMPIKSVVACN-----AMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERK 390

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH------KL 481
           GL   A +L   M+R  I P+  +   +L+ CA       GL   +  R IH      + 
Sbjct: 391 GLELDALELFRMMQREGIRPNFPSLISVLSVCA-------GLANLDHGREIHAQLVRSQF 443

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           + ++     ++ +  + G++  A+ + +   ++ + V+W ++++ 
Sbjct: 444 DLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVK-DVVMWNSIITG 487



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 178/362 (49%), Gaps = 24/362 (6%)

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM 245
           +S NS+I  Y + G IE AR +FD M  R++N+ISWNS++ GY Q K   Q A  +F+KM
Sbjct: 99  ISRNSLITRYSRLGQIEKARVVFDEM--RDKNIISWNSIVAGYFQNKRP-QEAQNMFDKM 155

Query: 246 PERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFD 305
            ER+ ISWN ++ G +  G +++A+ +FD+MP+R+VVSW  M+ GY K G +  A  LF 
Sbjct: 156 SERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFW 215

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
           +MP+++VV+   M+GG ++ G   +A  +FD M        D  +   ++    Q+G + 
Sbjct: 216 QMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMP-----EKDVVTRTNMIGGYCQVGRLV 270

Query: 366 KGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
           +     R L  +    N      +I  Y +   ++ A K+FE + + +   W AM+ G  
Sbjct: 271 EA----RMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYT 326

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL 485
             G  + A +L   M   S+    +    ++      G V +    F+ MR     E + 
Sbjct: 327 NCGRLDEASELFNAMPIKSV----VACNAMILCFGQNGEVPKARQVFDQMR-----EKDE 377

Query: 486 QHYGCMVDILGRAGHIEAARNLIEDMPME---PNDVIWRTLLSACRNYENLNVGEPVAKH 542
             +  M+ +  R G    A  L   M  E   PN     ++LS C    NL+ G  +   
Sbjct: 378 GTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQ 437

Query: 543 LI 544
           L+
Sbjct: 438 LV 439



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 125/280 (44%), Gaps = 50/280 (17%)

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
           +IS NS++    + G+++ A+ +FD+M  ++++SW +++ GY +  R   A+ +FD+M +
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           R+ ++ N ++ GY+ NG   +A E+FD M                               
Sbjct: 158 RNTISWNGLVSGYINNGMINEAREVFDRMP------------------------------ 187

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
                E++  S       A++  Y K G I  A  +F Q+ + +V  W  M+ GL   G 
Sbjct: 188 -----ERNVVSW-----TAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGR 237

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
            + A  L   M     E D +T T ++      G + E  + F+ M R + +      + 
Sbjct: 238 IDEACRLFDMMP----EKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVS-----WT 288

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRN 529
            M+    +   ++ AR L E MP E N+V W  +L    N
Sbjct: 289 TMITGYVQNQQVDIARKLFEVMP-EKNEVSWTAMLKGYTN 327


>gi|224126363|ref|XP_002329535.1| predicted protein [Populus trichocarpa]
 gi|222870244|gb|EEF07375.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 204/584 (34%), Positives = 322/584 (55%), Gaps = 46/584 (7%)

Query: 3   VSANYNQPCNSTQSTLL--LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP 60
           +S + N P       +L  L + C  +   NQIH ++   G  ++    ++ +       
Sbjct: 45  ISNSSNAPTLDLNHPILQKLEQSCTNIKQFNQIHTQLTVLGLFQHPFAASRYIKKL---- 100

Query: 61  CTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFC-LMLDNGVSVDK 119
           C  L   +  +    H   E+ D F+ N I++++ +  DP  AL  +   M+   V  + 
Sbjct: 101 CACLNSVSHCVSLYNHI--EEPDAFMCNTIMRSFVNVNDPFGALRFYYEKMIAKWVLPNH 158

Query: 120 FSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK 179
           ++  LV K C+ +G + EG ++H L+ K  F  DLF++N  I  Y  CG    AR +FD 
Sbjct: 159 YTFPLVAKVCADIGSLREGQKVHALVVKFGFELDLFVRNSFIRFYSVCGRTSDARMVFD- 217

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFA 238
                        +G+V                    +L+SWNS+++GY  +K+G L  A
Sbjct: 218 -------------NGFV-------------------LDLVSWNSMIDGY--VKNGELGLA 243

Query: 239 WQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVD 298
            +IF++M ERD+ +WNSM+ G V  G M+ A+ LFDKMP RDVVSW  MIDG+A++  V 
Sbjct: 244 REIFDEMYERDIFTWNSMISGYVGVGDMEAARGLFDKMPSRDVVSWNCMIDGFARIKDVS 303

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
           +A + FDEMP R+VV+ N M+  Y+R       L  FD M    ++ PD+ASLV VL+A 
Sbjct: 304 MAAKFFDEMPLRNVVSWNVMLALYLRCKKYSDCLRFFDMMVGGDFV-PDEASLVSVLTAC 362

Query: 359 AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWN 418
           A+L  +D+G  +H Y++ +    +     AL+ MY+KCG+++ A +VF+++ + SV  WN
Sbjct: 363 AELKMLDQGKWVHSYMKDNGIKPDMLLSTALLTMYAKCGAMDLAREVFDKMPEKSVVSWN 422

Query: 419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRI 478
           +MI G  IHG G+ A ++  EME+    P+D TF  +L+AC+H+G+V  G   F+LM R 
Sbjct: 423 SMIIGYGIHGHGDKALEMFREMEKGGPMPNDATFMSVLSACSHSGMVWNGWWYFDLMHRK 482

Query: 479 HKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEP 538
           ++++P+ +HYGC+VD+LG+AG  E + +L      E    +W  LLSACR +     GE 
Sbjct: 483 YRIQPKPEHYGCLVDLLGQAGLKEPSEDLTRKTHTEVEPTLWGDLLSACRAHCISEPGEI 542

Query: 539 VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
           +AK LI +  ++   Y+LLSN +   G W+D   +R  +K + L
Sbjct: 543 LAKQLIKLFPNHVVPYLLLSNTYVAEGRWDDVENLRMTLKNKTL 586


>gi|357501421|ref|XP_003620999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124365545|gb|ABN09779.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496014|gb|AES77217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 601

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 218/641 (34%), Positives = 346/641 (53%), Gaps = 64/641 (9%)

Query: 5   ANYNQPC-NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSS----- 58
           +N  + C N  QS+     K KT   + +IHA ++      N HL TK ++S +S     
Sbjct: 6   SNTERKCFNILQSS-----KTKTFKTLLEIHAFILRNSLHNNLHLLTKFISSSTSLALST 60

Query: 59  ---SPCTPLTEFARYIFFKYHAFREKKDPFLWNAII------KTYSHGLDPKEALVMFCL 109
              +    + + AR +FF  H    K D FL N II      + ++HG          C 
Sbjct: 61  PRRNDAVSIVQHAR-LFFN-HTPPHKCDEFLCNTIINAHFSLRQFNHGFTLYNQFSKDCF 118

Query: 110 MLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY 169
              +      ++ +L+LK CS      +G QIHG++ K  F  DL++             
Sbjct: 119 FRPSS-----YTFTLILKGCSVSDAKRQGFQIHGVVLKNWFCLDLYVGT----------- 162

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA 229
                               S++D YVK G++  AR++FD M +R  +L+SW +V+ GYA
Sbjct: 163 --------------------SLVDMYVKFGDVGFARKVFDEMSVR--SLVSWTAVIVGYA 200

Query: 230 QLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMID 289
           +    ++ A ++F+ M +RD+ ++N M+ G VK G+MD A+ LFDKM  ++V+SW +M+ 
Sbjct: 201 RCGDMVE-ARKLFDGMVDRDVAAFNVMIDGYVKMGRMDLARDLFDKMRVKNVISWTSMVH 259

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
           GY++ G VD AR LFD MP+++V++ NAM+ GY +NG S  AL++F  M+  + +  ++ 
Sbjct: 260 GYSEDGDVDEARFLFDCMPEKNVLSWNAMIRGYCQNGRSHDALKLFCEMRGNVDVEMNEV 319

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           ++V VL A+A L  +D G  +H +++++Q   +     AL+DMY+KCG I  A  VFE++
Sbjct: 320 TVVSVLPAVADLSALDLGGWVHGFVQRNQLDGSVHVCNALVDMYAKCGEIGKAKLVFEEM 379

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
            +     WNA+ING  ++G  + A ++   M R   EP+ IT T +L+AC H GLV+EG 
Sbjct: 380 TEKDTGSWNALINGYGVNGCAKEALEVFAMMLREGFEPNQITMTSVLSACNHCGLVEEGR 439

Query: 470 LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRN 529
            CFE M R   + P+++HYGCM+D+LGRAG ++ A  LI+ MP +PN++I  + L AC  
Sbjct: 440 RCFEAMERF-GIVPQIEHYGCMIDLLGRAGRLDEAEKLIQAMPYDPNEIILTSFLFACCY 498

Query: 530 YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCS 589
           +E+++  E + K  + M+   +  YV+L N++A    W D   V+ MMK+R   K    S
Sbjct: 499 FEDVSRAERILKVAVKMEKEGAGDYVMLRNLYATERRWADVEDVKEMMKKRGSNKEVAWS 558

Query: 590 WIELEGVVHEFFV--RDKSRLQVRDIYYMLDNMWTPDSVAT 628
            IE++G   EF       S   +  I   L  +W    V T
Sbjct: 559 VIEVDGRFREFVAGYYSHSHSHLEAIQSTLGQLWKHMKVET 599


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 234/687 (34%), Positives = 343/687 (49%), Gaps = 97/687 (14%)

Query: 18  LLLLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF---ARYI 71
           L LL  C   K+L +  +IH       F+KNT       ++  SS    LT        +
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQH-----FLKNT-------SNADSSVLHKLTRLYLSCNQV 59

Query: 72  FFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKAC 129
                 F E  +P   LWN II+ Y+       A+ ++  ML  GV  +K++   VLKAC
Sbjct: 60  VLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKAC 119

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
           S L  IE+G++IH   +     SD+F+   L+  Y +CG L  A++LF  M  RD V++N
Sbjct: 120 SGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWN 179

Query: 190 SMIDGYVKSGNIESARELFDSM-----------------PIRERNLISWNSVLNGYAQLK 232
           +MI G    G  + A +L   M                  + E   +     L+GY   +
Sbjct: 180 AMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRR 239

Query: 233 S-------------------GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALF 273
           S                    L +A +IF+ M  R+ +SW++M+ G V    M +A  LF
Sbjct: 240 SFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELF 299

Query: 274 DKMPKRDVVSWANMIDG----------------------------------------YAK 293
           D+M  +D +    +  G                                        YAK
Sbjct: 300 DQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAK 359

Query: 294 LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI 353
            G +D A R FD M  +D V+ +A++ G V+NG +  AL IF  MQ    + PD  +++ 
Sbjct: 360 CGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLS-GIDPDLTTMLG 418

Query: 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
           VL A + L  +  G   H YL    F+ +     ALIDMYSKCG I  A +VF +++   
Sbjct: 419 VLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHD 478

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE 473
           +  WNAMI G  IHGLG  A  L  ++  L ++PDDITF  LL++C+H+GLV EG L F+
Sbjct: 479 IVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFD 538

Query: 474 LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENL 533
            M R   + P ++H  CMVDILGRAG I+ A + I +MP EP+  IW  LLSACR ++N+
Sbjct: 539 AMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNI 598

Query: 534 NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
            +GE V+K +  +   ++ ++VLLSN+++  G W+DA  +R   K+  LKK+PGCSWIE+
Sbjct: 599 ELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEI 658

Query: 594 EGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            G+VH F   D+S LQ+  I   L+ +
Sbjct: 659 NGIVHAFVGGDQSHLQLSQINRKLEEL 685


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 192/537 (35%), Positives = 305/537 (56%), Gaps = 27/537 (5%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLM---------------LDNGV------SVDKFSASLV 125
           WNAI+  Y H   P EA  +F  M               + NG+        DK     V
Sbjct: 50  WNAIVAGYFHNKRPAEAQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNV 109

Query: 126 LKACSRL-GLIEEGLQIHG-LLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183
           +   S + G ++EGL     LL       ++     ++   +  G ++ AR+LFD + ++
Sbjct: 110 VSWTSMVRGYVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVK 169

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFE 243
           D V+  +MI G    G +  ARE+FD MP  +RN+++W S+++GYA + + +  A ++FE
Sbjct: 170 DVVASTNMIGGLCSEGRLSEAREIFDEMP--QRNVVAWTSMISGYA-MNNKVDVARKLFE 226

Query: 244 KMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRL 303
            MP+++ ++W +ML G  + G++++A  LF  MP + V +   MI G+   G V  AR +
Sbjct: 227 VMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWV 286

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           FD+M ++D    +A++  Y R G+ ++AL +F  MQ E  + P+  S++ +LS    L  
Sbjct: 287 FDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQRE-GVRPNFPSIISILSVCGSLAS 345

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           +D G  +H  L +  F L+      LI MY KCG +    +VF++     +  WN++I G
Sbjct: 346 LDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAG 405

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
            A HG GE A ++  EM      PD+ITF G+L+AC + G VKEGL  FE M+  ++++ 
Sbjct: 406 YAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQ 465

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
           + +HY CMVD+LGRAG +  A NLIE+MP+E + ++W  LLSACR ++NL++ E  AK L
Sbjct: 466 KTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKL 525

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
           + ++ S++  Y+LLSN++A    W D   +R  M+ RN+ K PGCSWIE++  VH F
Sbjct: 526 LQLEPSSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMF 582



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 115/368 (31%), Positives = 191/368 (51%), Gaps = 27/368 (7%)

Query: 120 FSASLVLKAC-----SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFAR 174
           FS+S  +  C     +RLG I+    I   L+     S     N +++ Y        A+
Sbjct: 12  FSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTS----WNAIVAGYFHNKRPAEAQ 67

Query: 175 QLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG 234
           +LFDKM  R+++S+N ++ GYVK+G I  AR++FD MP  ERN++SW S++ GY Q +  
Sbjct: 68  KLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMP--ERNVVSWTSMVRGYVQ-EGL 124

Query: 235 LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKL 294
           +  A  +F +MPE++++SW  ML G ++ G++D+A+ LFD +P +DVV+  NMI G    
Sbjct: 125 IDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSE 184

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD--DASLV 352
           GR+  AR +FDEMP+R+VVA  +M+ GY  N     A ++F+ M       PD  + +  
Sbjct: 185 GRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVM-------PDKNEVTWT 237

Query: 353 IVLSAIAQLGHIDKGVAIHRYLE-KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED 411
            +L    + G I++   + + +  K   + NG     +I  +   G +  A  VF+Q+++
Sbjct: 238 AMLKGYTRSGRINEAAELFKAMPVKPVAACNG-----MIMGFGLNGEVGKARWVFDQMKE 292

Query: 412 GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC 471
                W+A+I      G    A  L   M+R  + P+  +   +L+ C     +  G   
Sbjct: 293 KDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQV 352

Query: 472 FELMRRIH 479
              + R H
Sbjct: 353 HSQLVRSH 360



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 165/347 (47%), Gaps = 48/347 (13%)

Query: 192 IDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI 251
           I  + + G I+ AR +FD +  + + + SWN+++ GY   K   + A ++F+KMPER+ I
Sbjct: 23  ISYFARLGQIDRARNIFDDL--QSKTVTSWNAIVAGYFHNKRPAE-AQKLFDKMPERNTI 79

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKL----------------- 294
           SWN ++ G VK G + +A+ +FDKMP+R+VVSW +M+ GY +                  
Sbjct: 80  SWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKN 139

Query: 295 --------------GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQC 340
                         GRVD ARRLFD +P +DVVA   M+GG    G   +A EIFD M  
Sbjct: 140 VVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMP- 198

Query: 341 ELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE 400
                    ++V   S I+     +K V + R L +     N     A++  Y++ G I 
Sbjct: 199 -------QRNVVAWTSMISGYAMNNK-VDVARKLFEVMPDKNEVTWTAMLKGYTRSGRIN 250

Query: 401 NAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460
            A ++F+ +    V   N MI G  ++G    A  +  +M+    E DD T++ L+    
Sbjct: 251 EAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMK----EKDDGTWSALIKIYE 306

Query: 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNL 507
             G   E L  F LM+R   + P       ++ + G    ++  R +
Sbjct: 307 RKGFELEALALFSLMQR-EGVRPNFPSIISILSVCGSLASLDHGRQV 352



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 126/244 (51%), Gaps = 19/244 (7%)

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           AR++F +     ++KD   W+A+IK Y       EAL +F LM   GV  +  S   +L 
Sbjct: 283 ARWVFDQM----KEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILS 338

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
            C  L  ++ G Q+H  L +  F  D+++ + LI++Y++CG L   +++FD+   +D V 
Sbjct: 339 VCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVM 398

Query: 188 YNSMIDGYVKSGNIESARELFDSM--PIRERNLISWNSVLN--GY-AQLKSGLQFAWQIF 242
           +NS+I GY + G  E A E+F  M       + I++  VL+  GY  ++K GL    +IF
Sbjct: 399 WNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGL----EIF 454

Query: 243 EKMPERDLISWNSMLHGCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGR 296
           E M  +  +   +  + C+     + GK+++A  L + MP + D + W  ++        
Sbjct: 455 ESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKN 514

Query: 297 VDIA 300
           +D+A
Sbjct: 515 LDLA 518


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 209/610 (34%), Positives = 331/610 (54%), Gaps = 78/610 (12%)

Query: 15  QSTLLLLRKCKT---LNDVNQIHARMITTGF--IKNTHLTTKLVASFSSSPCTPLTEFAR 69
           + T+ LL +C T   +  + +I A++I +    I    +  K +   SS          R
Sbjct: 22  RKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNL------R 75

Query: 70  YIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFC--LMLDNGVSVDKFSASLVLK 127
           +    ++ F    + F +NA++K +S        +  F   L+L N  + D+++ + VLK
Sbjct: 76  HSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLK 135

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           AC+ L  + EG ++H  + K           C  +L+VR                     
Sbjct: 136 ACAGLAQVLEGQKVHCFVTKYG---------CESNLFVR--------------------- 165

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
            NS++D Y K G                          N  AQ         ++F++M  
Sbjct: 166 -NSLVDLYFKVG-------------------------CNCIAQ---------KLFDEMVV 190

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
           RD++SWN+++ G    G +D A+ +FD M ++++VSW+ MI GYA++G ++ AR+LF+ M
Sbjct: 191 RDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENM 250

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
           P R+VV+ NAM+ GY +N     A+E+F  MQ E  L P+D +LV VLSA A LG +D G
Sbjct: 251 PMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLG 310

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
             IHR++ +++  +    G AL DMY+KCG +  A  VF ++ +  V  W+ +I GLA++
Sbjct: 311 KWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMY 370

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           G    AF+   EM    +EP+DI+F GLL AC HAGLV +GL  F++M +++ + P+++H
Sbjct: 371 GYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEH 430

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
           YGC+VD+L RAG ++ A +LI  MPM+PN ++W  LL  CR Y++   GE V   ++ +D
Sbjct: 431 YGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELD 490

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
           S++S S V L+N++A +G  +DA   R  M++    K PGCSWIE+   V+EFF+ D S 
Sbjct: 491 SNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSH 550

Query: 608 LQVRDIYYML 617
            Q   IY M+
Sbjct: 551 PQSLRIYSMI 560


>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial-like [Glycine max]
          Length = 912

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 196/531 (36%), Positives = 304/531 (57%), Gaps = 43/531 (8%)

Query: 101 KEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCL 160
           +EAL +F  M  +GV  +  +   V+ ACS  G I     IH +  K+     + +   L
Sbjct: 383 REALEVFKDMRSDGVVPNDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNL 442

Query: 161 ISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLIS 220
           +  Y  C  +  AR+LFD+M   + VS+N M++GY K+G ++ ARELF+ +P  ++++IS
Sbjct: 443 MRAYCLCSGVGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVP--DKDVIS 500

Query: 221 WNSVLNGY--------------AQLKSGLQF--------------------AWQIFEKMP 246
           W ++++GY              A L+SGL                       WQ+   + 
Sbjct: 501 WGTMIDGYILMNRLHEALVMYRAMLRSGLALNEILVVNLVSACGRLNAIGDGWQLHGMVV 560

Query: 247 ERDLISWN----SMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
           ++    +N    +++H    CG MD A   F+   K  + SW  ++ G+ K   VD AR+
Sbjct: 561 KKGFDCYNFIQTTIIHFYAACGMMDLACLQFEVGAKDHLESWNALVSGFIKNRMVDQARK 620

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           +FD+MP+RDV + + M+ GY +   S  ALE+F  M     + P++ ++V V SAIA LG
Sbjct: 621 IFDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVAS-GIKPNEVTMVSVFSAIATLG 679

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG--SVDHWNAM 420
            + +G   H Y+  +   LN     ALIDMY+KCGSI +A++ F QI D   SV  WNA+
Sbjct: 680 TLKEGRWAHEYICNESIPLNDNLRAALIDMYAKCGSINSALQFFNQIRDKTFSVSPWNAI 739

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           I GLA HG   +  D+  +M+R +I+P+ ITF G+L+AC HAGLV+ G   F +M+  + 
Sbjct: 740 ICGLASHGHASMCLDVFSDMQRYNIKPNPITFIGVLSACCHAGLVEPGRRIFRIMKSAYN 799

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           +EP+++HYGCMVD+LGRAG +E A  +I  MPM+ + VIW TLL+ACR + ++N+GE  A
Sbjct: 800 VEPDIKHYGCMVDLLGRAGLLEEAEEMIRSMPMKADIVIWGTLLAACRTHGDVNIGERAA 859

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           + L G+  S+    VLLSN++A  G W D   VR  ++ + ++++PGCS +
Sbjct: 860 ESLAGLAPSHGGGKVLLSNIYADAGRWEDVSLVRRAIQNQRMERMPGCSGV 910



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 130/511 (25%), Positives = 228/511 (44%), Gaps = 90/511 (17%)

Query: 74  KYHAFR-EKKDPFL------WNAIIKTYSHGLDPKEALVMFC-LMLDNGVSVDKFSASLV 125
           KYH+      +P L      +++      H  DP+  + +FC   L       + +    
Sbjct: 219 KYHSVELPSPNPILRSKWVSFSSSTNASPHVQDPQHFIGIFCNARLHQNHYECELALVSA 278

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           LK CS      +G Q+H L+ K+   S+ F+QN LI++Y + G ++ A+ LFD     + 
Sbjct: 279 LKYCSS---SSQGRQLHSLVLKLGLHSNTFIQNSLINMYAKRGSIKDAQLLFDACPTLNP 335

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM 245
           +S N M+ GY K+G +++AR+LFD MP  ++  +S+ +++ G  Q     + A ++F+ M
Sbjct: 336 ISCNIMVCGYAKAGQLDNARKLFDIMP--DKGCVSYTTMIMGLVQ-NECFREALEVFKDM 392

Query: 246 PERD----------------------------------------LISWNSMLHGCVKCGK 265
                                                       L+S N M   C+ C  
Sbjct: 393 RSDGVVPNDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCL-CSG 451

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
           + +A+ LFD+MP+ ++VSW  M++GYAK G VD+AR LF+ +P +DV++   M+ GY+  
Sbjct: 452 VGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGYILM 511

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
               +AL ++  M     L  ++  +V ++SA  +L  I  G  +H  + K  F      
Sbjct: 512 NRLHEALVMYRAML-RSGLALNEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNFI 570

Query: 386 GVALIDMYSKCG-------------------------------SIENAIKVFEQIEDGSV 414
              +I  Y+ CG                                ++ A K+F+ + +  V
Sbjct: 571 QTTIIHFYAACGMMDLACLQFEVGAKDHLESWNALVSGFIKNRMVDQARKIFDDMPERDV 630

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE- 473
             W+ MI+G A      +A +L  +M    I+P+++T   + +A A  G +KEG    E 
Sbjct: 631 FSWSTMISGYAQTDQSRIALELFHKMVASGIKPNEVTMVSVFSAIATLGTLKEGRWAHEY 690

Query: 474 LMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504
           +      L   L+    ++D+  + G I +A
Sbjct: 691 ICNESIPLNDNLR--AALIDMYAKCGSINSA 719


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 187/466 (40%), Positives = 280/466 (60%), Gaps = 7/466 (1%)

Query: 158 NCLISLYVRC-GYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRER 216
           NCL++ Y R  G L  AR LFD++   D+VSYN+++  +  SG+ + AR LF SMP+R+ 
Sbjct: 101 NCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRD- 159

Query: 217 NLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK 275
            ++SWN++++G +  KSG ++ A  +F  MP R+ +SWN+M+ G      M  A+  F  
Sbjct: 160 -VVSWNTMVSGLS--KSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRN 216

Query: 276 MPKR-DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEI 334
            P++ D V W  M+ GY  +G V  A   F+ MP R++V+ NA++ GYV+N ++  AL +
Sbjct: 217 APEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRL 276

Query: 335 FDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYS 394
           F  M  E  + P+ ++L  VL   + L  +  G  IH++  K   S N   G +L+ MY 
Sbjct: 277 FRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYC 336

Query: 395 KCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTG 454
           KCG + +A K+F ++    V  WNAMI+G A HG G+ A +L   M+   +EP+ ITF  
Sbjct: 337 KCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVA 396

Query: 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPME 514
           +L AC H GL   G+ CFE M+ ++ +EP + HY CMVD+L RAG +E A +LI  MP E
Sbjct: 397 VLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFE 456

Query: 515 PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVR 574
           P+   + TLL+ACR Y+NL   E  A  LI  D  ++ +YV L+N++AG   W+D  RVR
Sbjct: 457 PHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVR 516

Query: 575 SMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
             MK+  + K PG SWIE++GV+HEF   D+   Q+  I+  L  +
Sbjct: 517 RWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQL 562



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 101/200 (50%), Gaps = 11/200 (5%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLML-DNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
           WNA++  Y       +AL +F  M+ +  V  +  + S VL  CS L  +  G QIH   
Sbjct: 257 WNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWC 316

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
            K+    +L +   L+S+Y +CG L  A +LF +M  RD V++N+MI GY + G+ + A 
Sbjct: 317 MKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAI 376

Query: 206 ELFDSMPIR--ERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLIS-----WNSML 257
            LF+ M     E N I++ +VL   A + +GL  F  + FE M E   I      ++ M+
Sbjct: 377 NLFERMKDEGVEPNWITFVAVLT--ACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMV 434

Query: 258 HGCVKCGKMDDAQALFDKMP 277
               + GK++ A  L   MP
Sbjct: 435 DLLCRAGKLERAVDLIRSMP 454



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 108/245 (44%), Gaps = 46/245 (18%)

Query: 9   QPCNSTQSTLLLLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLT 65
           QP  ST S++LL   C  L+ +    QIH   +     +N  + T LV+ +    C  L+
Sbjct: 287 QPNASTLSSVLL--GCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCK--CGDLS 342

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
              + +F + H     +D   WNA+I  Y+   D KEA+ +F  M D GV  +  +   V
Sbjct: 343 SACK-LFGEMHT----RDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAV 397

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           L AC   GL + G                          +RC   E  ++L+   GI   
Sbjct: 398 LTACIHTGLCDFG--------------------------IRC--FEGMQELY---GIEPR 426

Query: 186 VS-YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244
           V  Y+ M+D   ++G +E A +L  SMP  E +  ++ ++L    ++   L+FA     K
Sbjct: 427 VDHYSCMVDLLCRAGKLERAVDLIRSMPF-EPHPSAYGTLLAA-CRVYKNLEFAELAAGK 484

Query: 245 MPERD 249
           + E+D
Sbjct: 485 LIEKD 489


>gi|2827553|emb|CAA16561.1| predicted protein [Arabidopsis thaliana]
 gi|7269122|emb|CAB79231.1| predicted protein [Arabidopsis thaliana]
          Length = 889

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 192/568 (33%), Positives = 312/568 (54%), Gaps = 15/568 (2%)

Query: 19  LLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVAS---FSSSPCTPLTEFARYIFFKY 75
             L++C  L    Q+HA+++   +    HL   LV     F+      +  + + I   +
Sbjct: 277 FFLQRCVVLEQAKQVHAQLVVNRY---NHLEPILVHQTLHFTKEFSRNIVTYVKRILKGF 333

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
           +      D F W  +++  S     KE + ++  M ++G+     + + VL+AC ++  +
Sbjct: 334 NGH----DSFSWGCLVRFLSQHRKFKETVDVYIDMHNSGIPPSSHAVTSVLRACGKMENM 389

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
            +G  IH    K      +++Q  L+ LY R GY+E A++ FD +  +++VS+NS++ GY
Sbjct: 390 VDGKPIHAQALKNGLCGCVYVQTGLVGLYSRLGYIELAKKAFDDIAEKNTVSWNSLLHGY 449

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
           ++SG ++ AR +FD +P  E++ +SWN +++ YA+ K  +  A  +F  MP +   SWN 
Sbjct: 450 LESGELDEARRVFDKIP--EKDAVSWNLIISSYAK-KGDMGNACSLFSAMPLKSPASWNI 506

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           ++ G V C +M  A+  FD MP+++ VSW  MI GY KLG V  A  LF  M K+D +  
Sbjct: 507 LIGGYVNCREMKLARTYFDAMPQKNGVSWITMISGYTKLGDVQSAEELFRLMSKKDKLVY 566

Query: 316 NAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
           +AM+  Y +NG    AL++F  M +   Y+ PD+ +L  V+SA +QLG+   G  +  Y+
Sbjct: 567 DAMIACYTQNGKPKDALKLFAQMLERNSYIQPDEITLSSVVSANSQLGNTSFGTWVESYI 626

Query: 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
            +    ++     +LID+Y K G    A K+F  +       ++AMI G  I+G+   A 
Sbjct: 627 TEHGIKIDDLLSTSLIDLYMKGGDFAKAFKMFSNLNKKDTVSYSAMIMGCGINGMATEAN 686

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
            L   M    I P+ +TFTGLL+A +H+GLV+EG  CF  M+  H LEP   HYG MVD+
Sbjct: 687 SLFTAMIEKKIPPNVVTFTGLLSAYSHSGLVQEGYKCFNSMKD-HNLEPSADHYGIMVDM 745

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           LGRAG +E A  LI+ MPM+PN  +W  LL A   + N+  GE    H + +++  +   
Sbjct: 746 LGRAGRLEEAYELIKSMPMQPNAGVWGALLLASGLHNNVEFGEIACSHCVKLETDPTGYL 805

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNL 582
             L+ +++ +G W+DAR VR  +KE+ L
Sbjct: 806 SHLAMIYSSVGRWDDARTVRDSIKEKKL 833


>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 639

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 205/596 (34%), Positives = 323/596 (54%), Gaps = 48/596 (8%)

Query: 27  LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFL 86
           L+ V ++HA+++  G   +    +KL++S++     P +   R IF  +     +   FL
Sbjct: 71  LHHVQELHAQLLKHGLHLDPLAASKLISSYALQRRLPAS---RRIFASFP--NPQATTFL 125

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
            N +++ Y+    P  A+ +F  M       D F+ S ++KA S  GL          LR
Sbjct: 126 PNTLLRAYALNALPHAAVSLFSAMPQR----DSFTYSFLIKALSSSGLTP--------LR 173

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
            V             S  V+ G +E            D+   N++ID Y K+G    A +
Sbjct: 174 AVH------------SHVVKLGSIE------------DTYVGNALIDAYSKNGGFLDASK 209

Query: 207 LFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGK 265
           +F+ MP   R+ +SWNS +   A ++ G +  A ++F++MP++D +SWN++L G  K GK
Sbjct: 210 VFEEMP--RRDTVSWNSAMA--AMVRQGEVASARRMFDEMPDKDTVSWNTVLDGYTKAGK 265

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
           M+DA  LF  MP+R+VVSW+ ++ GY K G +++AR +FD+MP +++V    M+    +N
Sbjct: 266 MEDAFELFQCMPERNVVSWSTVVSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQN 325

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
           G   +A  +F  M+ E  +  D A++V +L+A A+ G +  G  IHRY+   Q   +   
Sbjct: 326 GLVEEAGRLFTQMK-EAAVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHV 384

Query: 386 GVALIDMYSKCGSIENAIKVFE-QIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS 444
             A+IDM+ KCG +  A  VF+ +I +     WN +I G A+HG G+ A D   +M+   
Sbjct: 385 CNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQG 444

Query: 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504
             PD +T   +L+AC H G V+EG   F  M R + + P+++HYGCM+D+LGR G IE A
Sbjct: 445 FRPDAVTMINVLSACTHMGFVEEGRQHFSNMERDYGIVPQIEHYGCMIDLLGRGGLIEEA 504

Query: 505 RNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL 564
             LI+ MP +PN+VIW +LLSACR ++N+   E     L  +  SN+ +Y +LSN++A  
Sbjct: 505 VGLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEA 564

Query: 565 GMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           G W+D  + R  MK    +K  G SWIEL+   HEF V D+       I  M+D +
Sbjct: 565 GQWSDMAKARMQMKGTGSQKSAGSSWIELDEAFHEFTVGDRKHSDSDQISEMVDRL 620


>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
 gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
          Length = 551

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 187/466 (40%), Positives = 280/466 (60%), Gaps = 7/466 (1%)

Query: 158 NCLISLYVRC-GYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRER 216
           NCL++ Y R  G L  AR LFD++   D+VSYN+++  +  SG+ + AR LF SMP+R+ 
Sbjct: 52  NCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRD- 110

Query: 217 NLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK 275
            ++SWN++++G +  KSG ++ A  +F  MP R+ +SWN+M+ G      M  A+  F  
Sbjct: 111 -VVSWNTMVSGLS--KSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRN 167

Query: 276 MPKR-DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEI 334
            P++ D V W  M+ GY  +G V  A   F+ MP R++V+ NA++ GYV+N ++  AL +
Sbjct: 168 APEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRL 227

Query: 335 FDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYS 394
           F  M  E  + P+ ++L  VL   + L  +  G  IH++  K   S N   G +L+ MY 
Sbjct: 228 FRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYC 287

Query: 395 KCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTG 454
           KCG + +A K+F ++    V  WNAMI+G A HG G+ A +L   M+   +EP+ ITF  
Sbjct: 288 KCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVA 347

Query: 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPME 514
           +L AC H GL   G+ CFE M+ ++ +EP + HY CMVD+L RAG +E A +LI  MP E
Sbjct: 348 VLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFE 407

Query: 515 PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVR 574
           P+   + TLL+ACR Y+NL   E  A  LI  D  ++ +YV L+N++AG   W+D  RVR
Sbjct: 408 PHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVR 467

Query: 575 SMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
             MK+  + K PG SWIE++GV+HEF   D+   Q+  I+  L  +
Sbjct: 468 RWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQL 513



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 101/200 (50%), Gaps = 11/200 (5%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLML-DNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
           WNA++  Y       +AL +F  M+ +  V  +  + S VL  CS L  +  G QIH   
Sbjct: 208 WNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWC 267

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
            K+    +L +   L+S+Y +CG L  A +LF +M  RD V++N+MI GY + G+ + A 
Sbjct: 268 MKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAI 327

Query: 206 ELFDSMPIR--ERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLIS-----WNSML 257
            LF+ M     E N I++ +VL   A + +GL  F  + FE M E   I      ++ M+
Sbjct: 328 NLFERMKDEGVEPNWITFVAVLT--ACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMV 385

Query: 258 HGCVKCGKMDDAQALFDKMP 277
               + GK++ A  L   MP
Sbjct: 386 DLLCRAGKLERAVDLIRSMP 405



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 108/245 (44%), Gaps = 46/245 (18%)

Query: 9   QPCNSTQSTLLLLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLT 65
           QP  ST S++LL   C  L+ +    QIH   +     +N  + T LV+ +    C  L+
Sbjct: 238 QPNASTLSSVLL--GCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCK--CGDLS 293

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
              + +F + H     +D   WNA+I  Y+   D KEA+ +F  M D GV  +  +   V
Sbjct: 294 SACK-LFGEMHT----RDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAV 348

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           L AC   GL + G                          +RC   E  ++L+   GI   
Sbjct: 349 LTACIHTGLCDFG--------------------------IRC--FEGMQELY---GIEPR 377

Query: 186 VS-YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244
           V  Y+ M+D   ++G +E A +L  SMP  E +  ++ ++L    ++   L+FA     K
Sbjct: 378 VDHYSCMVDLLCRAGKLERAVDLIRSMPF-EPHPSAYGTLLAA-CRVYKNLEFAELAAGK 435

Query: 245 MPERD 249
           + E+D
Sbjct: 436 LIEKD 440


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 213/647 (32%), Positives = 342/647 (52%), Gaps = 72/647 (11%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LL  C+TLN   Q+HA  + TGF  +  + TKL+  +    C    + A  +F K     
Sbjct: 68  LLESCRTLNLGKQVHAHTLKTGFHGHEFVETKLLQMYGRFGCL---DDANLVFVKM---- 120

Query: 80  EKKDPFLWNAIIKTY-SHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
            +++ + W AI+  +  HG   +EAL +F  +  + + ++ F   +VLK C  L ++E G
Sbjct: 121 PQRNLYSWTAILSVHVDHGY-FEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRVLELG 179

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
            Q+HG++ K                  RC  +  A ++F    +++ VSYN+MI GY ++
Sbjct: 180 RQLHGVVIK------------------RCADMGSALKIFSGFSVKNVVSYNTMIVGYCEN 221

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQ-FAWQIFEKMPERDLISWN 254
           GN+E A+ELFD M +  ++ ISWNS+++GYA        L  F   + E+  E D  +  
Sbjct: 222 GNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLG 281

Query: 255 SMLHGCV-----------------------------------KCGKMDDAQALFDKMPKR 279
           S+L  C                                    KC  +  AQ  FD + +R
Sbjct: 282 SVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTER 341

Query: 280 DVVSWANMIDGYAKLGRVDIARRLFDEMP----KRDVVACNAMMGGYVRNGYSMKALEIF 335
           D  +W  +I GYA   +++  + L  +M     + +V   N ++ G+V NG++  AL +F
Sbjct: 342 DTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLF 401

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
             MQ    L PD  ++ I+L A A+L  I +G  +H +  +  + L+   G AL+DMY+K
Sbjct: 402 TEMQTS-SLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAK 460

Query: 396 CGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGL 455
           CGSI++A++V+ +I + ++   NAM+   A+HG G+    L   M      PD +TF  +
Sbjct: 461 CGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSV 520

Query: 456 LNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEP 515
           L++C HAG V+ G   F+LM   + + P L+HY C+VD+L RAG ++ A  L++ +P +P
Sbjct: 521 LSSCVHAGAVETGHEFFDLMT-YYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKP 579

Query: 516 NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRS 575
           + V+W  LL  C  + N+ +GE  A+ LI ++ +N+ +YVLL+N++A  G W+D  R R 
Sbjct: 580 DSVMWGALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQ 639

Query: 576 MMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWT 622
           M+K+R + K PGCSWIE    +H F   DKS  +  DIY  LDN+ T
Sbjct: 640 MIKDRGMHKSPGCSWIEDREDIHVFLSCDKSHEKTEDIYTTLDNLNT 686


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 216/627 (34%), Positives = 338/627 (53%), Gaps = 68/627 (10%)

Query: 50  TKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCL 109
           T L+A+ SS+  + L   AR IFF        +D   +NA+I  YSH  D   A+ +F  
Sbjct: 85  TTLIAAHSSAGNSNL---AREIFFATPL--GIRDTVCYNAMITGYSHNNDGFGAIELFRD 139

Query: 110 MLDNGVSVDKFSASLVLKACSRLGLIEEG----LQIHGLLRKVAFGSDLFLQNCLISLYV 165
           +L NG   D F+ + VL A   L LI E      QIH  + K   G    + N L+S++V
Sbjct: 140 LLRNGFRPDNFTFTSVLGA---LALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFV 196

Query: 166 RCGY---------LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRER 216
           +C           +  AR+LFD+M  RD +S+ +MI GYV++G +++AR+  D M   E+
Sbjct: 197 KCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMT--EK 254

Query: 217 NLISWNSVLNGYAQLKSGLQFAWQIFEKM----PERDLISWNSMLHGCV----------- 261
            +++WN++++GY      L+ A ++F KM     + D  ++ S+L  C            
Sbjct: 255 LVVAWNAMISGYVHHGFFLE-ALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQV 313

Query: 262 ----------------------------KCGKMDDAQALFDKMPKRDVVSWANMIDGYAK 293
                                       KCGK+D+A+ +F++MP +D+VSW  ++ GY  
Sbjct: 314 HAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVN 373

Query: 294 LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI 353
            GR+D A+  F+EMP+R+++    M+ G  +NG+  ++L++F+ M+ E +  P D +   
Sbjct: 374 AGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGF-EPCDYAFAG 432

Query: 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
            + A A L  +  G  +H  L +  F  +   G ALI MY+KCG +E A  +F  +    
Sbjct: 433 AIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLD 492

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE 473
              WNAMI  L  HG G  A +L   M +  I PD ITF  +L+ C+HAGLV+EG   F+
Sbjct: 493 SVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFK 552

Query: 474 LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENL 533
            M  ++ + P   HY  M+D+L RAG    A+++IE MP+EP   IW  LL+ CR + N+
Sbjct: 553 SMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNM 612

Query: 534 NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
           ++G   A+ L  +   +  +YVLLSNM+A +G W+D  +VR +M+++ +KK PGCSWIE+
Sbjct: 613 DLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEV 672

Query: 594 EGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           E  VH F V D    +V+ +Y  L+ +
Sbjct: 673 ENKVHVFLVDDIVHPEVQAVYNYLEEL 699



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 149/513 (29%), Positives = 244/513 (47%), Gaps = 78/513 (15%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           WNA+I  Y H     EAL MF  M   G+  D+F+ + VL AC+  G    G Q+H  + 
Sbjct: 259 WNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYIL 318

Query: 147 KV----AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
           +     +    L + N L +LY +CG ++ ARQ+F++M ++D VS+N+++ GYV +G I+
Sbjct: 319 RTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRID 378

Query: 203 SARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC-V 261
            A+  F+ MP  ERNL++W  +++G AQ   G + + ++F +M        +    G  +
Sbjct: 379 EAKSFFEEMP--ERNLLTWTVMISGLAQNGFGEE-SLKLFNRMKSEGFEPCDYAFAGAII 435

Query: 262 KC--------GKMDDAQALFDKMPKRDVVSWAN-MIDGYAKLGRVDIARRLFDEMPKRDV 312
            C        G+   AQ +  ++     +S  N +I  YAK G V+ A  LF  MP  D 
Sbjct: 436 ACAWLAALMHGRQLHAQLV--RLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDS 493

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           V+ NAM+    ++G+  +ALE+F+ M  E  L PD  + + VLS  +  G +++G   HR
Sbjct: 494 VSWNAMIAALGQHGHGAQALELFELMLKEDIL-PDRITFLTVLSTCSHAGLVEEG---HR 549

Query: 373 YLEKDQFSLNGKHGVA--------LIDMYSKCGSIENAIKVFEQ--IEDGSVDHWNAMIN 422
           Y +    S++G +G+         +ID+  + G    A  + E   +E G    W A++ 
Sbjct: 550 YFK----SMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGP-PIWEALLA 604

Query: 423 GLAIHG---LGELAFDLLMEMERLSIEPDDITFTGLLNACAHA----------------G 463
           G  IHG   LG  A + L E+    +   D T+  L N  A                  G
Sbjct: 605 GCRIHGNMDLGIQAAERLFEL----MPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKG 660

Query: 464 LVKE-GLLCFELMRRIHK------LEPELQHYGCMVDILG----RAGHIEAARNLIEDMP 512
           + KE G    E+  ++H       + PE+Q     ++ LG    + G+I   + ++ DM 
Sbjct: 661 VKKEPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEELGLKMRKLGYIPDTKFVLHDME 720

Query: 513 MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIG 545
            E  + +  T      + E L VG  + K  +G
Sbjct: 721 SEQKEYVLST------HSEKLAVGFGLLKLPLG 747



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 128/429 (29%), Positives = 195/429 (45%), Gaps = 61/429 (14%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLF--DKMGIRDSVSYNSMIDGYVKSGNIESARELFDS 210
           D+  +  LI+ +   G    AR++F    +GIRD+V YN+MI GY  + +   A ELF  
Sbjct: 80  DIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRD 139

Query: 211 M---PIRERNLISWNSVLNGYAQL----KSGLQFAWQIFEKMPERDLISWNSMLHGCVKC 263
           +     R  N  ++ SVL   A +    K   Q    + +          N++L   VKC
Sbjct: 140 LLRNGFRPDNF-TFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKC 198

Query: 264 GK---------MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
                      M  A+ LFD+M +RD +SW  MI GY + G +D AR+  D M ++ VVA
Sbjct: 199 ASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVA 258

Query: 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
            NAM+ GYV +G+ ++ALE+F  M   L +  D+ +   VLSA A  G    G  +H Y+
Sbjct: 259 WNAMISGYVHHGFFLEALEMFRKMYL-LGIQWDEFTYTSVLSACANAGFFLHGKQVHAYI 317

Query: 375 EKDQ------FSLNGKHGVALIDMYSKCGSIENAIKVFEQ----------------IEDG 412
            + +      FSL+  +  AL  +Y KCG ++ A +VF Q                +  G
Sbjct: 318 LRTEPRPSLDFSLSVNN--ALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAG 375

Query: 413 SVDH---------------WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            +D                W  MI+GLA +G GE +  L   M+    EP D  F G + 
Sbjct: 376 RIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAII 435

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
           ACA    +  G      + R+   +  L     ++ +  + G +EAA  L   MP   + 
Sbjct: 436 ACAWLAALMHGRQLHAQLVRL-GFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPY-LDS 493

Query: 518 VIWRTLLSA 526
           V W  +++A
Sbjct: 494 VSWNAMIAA 502



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 162/392 (41%), Gaps = 59/392 (15%)

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK--RD 311
           N ++    K   +  A  LFD++ + D+V+   +I  ++  G  ++AR +F   P   RD
Sbjct: 54  NRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRD 113

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV-AI 370
            V  NAM+ GY  N     A+E+F ++    +  PD+ +   VL A+A +   +K    I
Sbjct: 114 TVCYNAMITGYSHNNDGFGAIELFRDLLRNGF-RPDNFTFTSVLGALALIVEDEKQCQQI 172

Query: 371 HRYLEKDQFSLNGKHGVALIDMYSKCG---------SIENAIKVFEQ------------- 408
           H  + K           AL+ ++ KC           +  A K+F++             
Sbjct: 173 HCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMI 232

Query: 409 ---IEDGSVD---------------HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
              + +G +D                WNAMI+G   HG    A ++  +M  L I+ D+ 
Sbjct: 233 AGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEF 292

Query: 451 TFTGLLNACAHAGLVKEGLLCFELMRRIH---KLEPELQHYGCMVDILGRAGHIEAARNL 507
           T+T +L+ACA+AG    G      + R      L+  L     +  +  + G ++ AR +
Sbjct: 293 TYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQV 352

Query: 508 IEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMW 567
              MP++ + V W  +LS    Y N    +        M   N  ++ ++ +  A  G  
Sbjct: 353 FNQMPVK-DLVSWNAILSG---YVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFG 408

Query: 568 NDARRVRSMMKERNLKK--------LPGCSWI 591
            ++ ++ + MK    +         +  C+W+
Sbjct: 409 EESLKLFNRMKSEGFEPCDYAFAGAIIACAWL 440



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 43/222 (19%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           Q+HA+++  GF  +      L+  ++      + E A  +F          D   WNA+I
Sbjct: 448 QLHAQLVRLGFDSSLSAGNALITMYAK---CGVVEAAHCLFLTMPYL----DSVSWNAMI 500

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
                     +AL +F LML   +  D+ +   VL  CS  GL+EEG   H   + ++  
Sbjct: 501 AALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEG---HRYFKSMS-- 555

Query: 152 SDLFLQNCLISLYVRC-GYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDS 210
                      LY  C G   +AR                MID   ++G    A+++ ++
Sbjct: 556 ----------GLYGICPGEDHYAR----------------MIDLLCRAGKFSEAKDMIET 589

Query: 211 MPIRERNLISWNSVLNG---YAQLKSGLQFAWQIFEKMPERD 249
           MP+     I W ++L G   +  +  G+Q A ++FE MP+ D
Sbjct: 590 MPVEPGPPI-WEALLAGCRIHGNMDLGIQAAERLFELMPQHD 630


>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
 gi|194706828|gb|ACF87498.1| unknown [Zea mays]
          Length = 570

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 198/546 (36%), Positives = 313/546 (57%), Gaps = 13/546 (2%)

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           D  ++N I + Y +   P+EAL +   ML  GV  ++F+   V+KAC+R    +  L +H
Sbjct: 9   DRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQAWDNALAVH 68

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
           G+  K+ F   +F+ N L+  Y   G L  +R+ FD+M  R+ VS+NSMI GY ++G+  
Sbjct: 69  GVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQAGDTR 128

Query: 203 SARELFDSMPIRERNLI----SWNSVLNGYAQLKSGLQFAWQIFEKM----PERDLISWN 254
            A  LF  M  R +  +    +  S+L   +Q +  L+F   +   M       DLI   
Sbjct: 129 EACALFGEM--RRQGFLGDEFTLASLLLACSQ-EGNLEFGRLVHCLMLVSGSPVDLILGG 185

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
           +++    KCG +  A+  F+ MP + VVSW +M+    K G VD AR  FD MP+R+ V+
Sbjct: 186 ALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVS 245

Query: 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
            N M+  YV+ G   +AL+++  MQ      PD+A+LV VLSA  ++G +  G  +H Y+
Sbjct: 246 WNTMISCYVQRGQYHEALDLYKQMQSH-GPAPDEATLVPVLSACGRIGDLTVGKMVHLYI 304

Query: 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
             +  + +     +L+DMY+KCG ++ AI++F ++ + +V  WN +I GLA+HG    A 
Sbjct: 305 RDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGRALDAI 364

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
                M R +  PD ITF  LL++C+H GL++ G   FE MR ++ ++ E++HY CMVD+
Sbjct: 365 TFFRSMVR-NTSPDGITFVALLSSCSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDL 423

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           LGR GH+E A  LI++MPM+P+ V+W  LL ACR + N+ +G+ V K L+ ++  +   +
Sbjct: 424 LGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGKQVIKQLLELEGISGGLF 483

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           VL+SN+      W D +R+R +MKER  +K  G S IE+   +HEF V D       +IY
Sbjct: 484 VLISNLLYETNQWEDMKRLRKLMKERGTRKDMGVSSIEINNSIHEFGVEDIRHESSSEIY 543

Query: 615 YMLDNM 620
            ++D +
Sbjct: 544 AVVDQL 549


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 224/685 (32%), Positives = 352/685 (51%), Gaps = 85/685 (12%)

Query: 12   NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
            N+  S L L  + K L +   +H+ + + G      L  KLV  + S  C  L E  R I
Sbjct: 452  NAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVS--CGALRE-GRRI 508

Query: 72   FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
            F   H   + K  FLWN ++  Y+   D +E++ +F  M   G++ + ++ S +LK  + 
Sbjct: 509  F--DHILSDNK-VFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFAT 565

Query: 132  LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
            LG + E  +IHG + K+ FGS   + N LI+ Y + G ++ A +LFD++G RD VS+NSM
Sbjct: 566  LGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSM 625

Query: 192  IDGYVKSGNIESARELFDSMPIR------------------------------------- 214
            I G V +G   SA E F  M I                                      
Sbjct: 626  ISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACF 685

Query: 215  ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFD 274
             R ++  N++L+ Y++    L  A Q FEKM ++ ++SW S++   V+ G  DDA  LF 
Sbjct: 686  SREVMFNNTLLDMYSKC-GNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFY 744

Query: 275  KMPKR----DVVSWAN-----------------------------------MIDGYAKLG 295
            +M  +    DV S  +                                   ++D YAK G
Sbjct: 745  EMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCG 804

Query: 296  RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
             ++ A  +F ++P +D+V+ N M+GGY +N    +AL++F  MQ E    PD  ++  +L
Sbjct: 805  SMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES--RPDGITMACLL 862

Query: 356  SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
             A   L  ++ G  IH  + ++ +S       ALIDMY KCGS+ +A  +F+ I +  + 
Sbjct: 863  PACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLI 922

Query: 416  HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
             W  MI+G  +HGLG  A     +M    I+PD+ITFT +L AC+H+GL+ EG   F  M
Sbjct: 923  TWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSM 982

Query: 476  RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNV 535
                 +EP+L+HY CMVD+L R G++  A NLIE MP++P+  IW  LL  CR + ++ +
Sbjct: 983  ISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVEL 1042

Query: 536  GEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG 595
             E VA+H+  ++  N+  YVLL+N++A    W + +++R  + +R LKK PGCSWIE++G
Sbjct: 1043 AEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQG 1102

Query: 596  VVHEFFVRDKSRLQVRDIYYMLDNM 620
                F   D +  Q + I+ +L+N+
Sbjct: 1103 KFTTFVSADTAHPQAKSIFSLLNNL 1127



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 140/523 (26%), Positives = 225/523 (43%), Gaps = 103/523 (19%)

Query: 98  LDPKEALVMFCLMLD--NGVSVDKFSA---------SLVLKACSRLGLIEEGLQIHGLLR 146
           LD    +  FC + D  N V + + S          S +L+ C+    ++EG  +H ++ 
Sbjct: 419 LDENTKICKFCEVGDLRNAVELLRMSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVIS 478

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS-YNSMIDGYVKSGNIESAR 205
                 +  L   L+ +YV CG L   R++FD +   + V  +N M+  Y K G+   + 
Sbjct: 479 SNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESI 538

Query: 206 ELFDSMP---------------------------------IRERNLISWNSVLNGY--AQ 230
            LF  M                                  + +    S+N+V+N      
Sbjct: 539 YLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATY 598

Query: 231 LKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP------------ 277
            KSG +  A ++F+++ +RD++SWNSM+ GCV  G    A   F +M             
Sbjct: 599 FKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLV 658

Query: 278 ---------------------------KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
                                       R+V+    ++D Y+K G ++ A + F++M ++
Sbjct: 659 NSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQK 718

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
            VV+  +++  YVR G    A+ +F  M+ +  + PD  S+  VL A A    +DKG  +
Sbjct: 719 TVVSWTSLIAAYVREGLYDDAIRLFYEMESK-GVSPDVYSMTSVLHACACGNSLDKGRDV 777

Query: 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
           H Y+ K+  +L      AL+DMY+KCGS+E A  VF QI    +  WN MI G + + L 
Sbjct: 778 HNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLP 837

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL------EPE 484
             A  L  EM++ S  PD IT   LL AC         L   E+ R IH          E
Sbjct: 838 NEALKLFAEMQKES-RPDGITMACLLPACG-------SLAALEIGRGIHGCILRNGYSSE 889

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSAC 527
           L     ++D+  + G +  AR L+ DM  E + + W  ++S C
Sbjct: 890 LHVANALIDMYVKCGSLVHAR-LLFDMIPEKDLITWTVMISGC 931


>gi|297824523|ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325983|gb|EFH56403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 555

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 183/542 (33%), Positives = 312/542 (57%), Gaps = 38/542 (7%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFC-LMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           ++D FL N++IK Y       ++   +  L  +  ++ D F+ + + K+C+    + +GL
Sbjct: 39  REDSFLCNSMIKAYLETRHYNDSFAFYRDLRKETCLAPDNFTFTTMTKSCTLSMCVYQGL 98

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           Q+H  + +  F +D+++   ++ +Y +          F KMG                  
Sbjct: 99  QLHSQIWRSGFCADMYVSTGVVDMYAK----------FGKMG------------------ 130

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE-RDLISWNSMLH 258
               AR +FD MP  +R+ +SW +++ GY +    L  A ++F++MP+ +D++ +N+M+ 
Sbjct: 131 ---CARNVFDEMP--QRSEVSWTALICGYVRFGE-LDLASKLFDQMPQVKDVVIYNAMMD 184

Query: 259 GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
           G VK G M  A+ LFD+M  + V++W  MI GY     +D AR+LFD MP+R++V+ N M
Sbjct: 185 GFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNSNDIDSARKLFDAMPERNLVSWNTM 244

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
           +GGY +N    +A+ +F  MQ    L PDD +++ VL AI+  G +  G   H ++++  
Sbjct: 245 IGGYCQNKQPQEAIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKN 304

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
                K   A++DMYSKCG IE A ++F+++ +  V  WNAMI+G A++G    A DL +
Sbjct: 305 LDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNAHAALDLFL 364

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
            M +   +PD+IT   +++AC H GLV+EG   F++MR+   L  +++HYGCMVD+LGRA
Sbjct: 365 TMAKEE-KPDEITMLAVISACNHGGLVEEGRKWFQMMRKF-GLNAKIEHYGCMVDLLGRA 422

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           G+++ A +LI +MP +PN +I  + LSAC  Y+++   E + K  + ++  N  +YVLL 
Sbjct: 423 GNLKQAEHLITNMPFKPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLR 482

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           N++A    W+D   V++MM++   KK  GCS IE+  +V EF   D +    + I+ +L+
Sbjct: 483 NLYAADKRWDDFGMVKNMMRKNEAKKEVGCSLIEINYIVSEFISGDTTHPHRQSIHLVLE 542

Query: 619 NM 620
            +
Sbjct: 543 KL 544



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 21/242 (8%)

Query: 297 VDIARRLFDEMPKR-DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
           +  AR+LFD+ P R D   CN+M+  Y+   +   +   + +++ E  L PD+ +   + 
Sbjct: 26  IGYARKLFDQRPHREDSFLCNSMIKAYLETRHYNDSFAFYRDLRKETCLAPDNFTFTTMT 85

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
            +      + +G+ +H  + +  F  +      ++DMY+K G +  A  VF+++   S  
Sbjct: 86  KSCTLSMCVYQGLQLHSQIWRSGFCADMYVSTGVVDMYAKFGKMGCARNVFDEMPQRSEV 145

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            W A+I G    G  +LA  L  +M ++    D + +  +++     G VK G      M
Sbjct: 146 SWTALICGYVRFGELDLASKLFDQMPQVK---DVVIYNAMMD-----GFVKSG-----DM 192

Query: 476 RRIHKLEPELQH-----YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA-CRN 529
               +L  E+ H     +  M+     +  I++AR L + MP E N V W T++   C+N
Sbjct: 193 TSARRLFDEMTHKTVITWTTMIHGYCNSNDIDSARKLFDAMP-ERNLVSWNTMIGGYCQN 251

Query: 530 YE 531
            +
Sbjct: 252 KQ 253


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 187/466 (40%), Positives = 280/466 (60%), Gaps = 7/466 (1%)

Query: 158 NCLISLYVRC-GYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRER 216
           NCL++ Y R  G L  AR LFD++   D+VSYN+++  +  SG+ + AR LF SMP+R+ 
Sbjct: 52  NCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRD- 110

Query: 217 NLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK 275
            ++SWN++++G +  KSG ++ A  +F  MP R+ +SWN+M+ G      M  A+  F  
Sbjct: 111 -VVSWNTMVSGLS--KSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRN 167

Query: 276 MPKR-DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEI 334
            P++ D V W  M+ GY  +G V  A   F+ MP R++V+ NA++ GYV+N ++  AL +
Sbjct: 168 APEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRL 227

Query: 335 FDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYS 394
           F  M  E  + P+ ++L  VL   + L  +  G  IH++  K   S N   G +L+ MY 
Sbjct: 228 FRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYC 287

Query: 395 KCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTG 454
           KCG + +A K+F ++    V  WNAMI+G A HG G+ A +L   M+   +EP+ ITF  
Sbjct: 288 KCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVA 347

Query: 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPME 514
           +L AC H GL   G+ CFE M+ ++ +EP + HY CMVD+L RAG +E A +LI  MP E
Sbjct: 348 VLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFE 407

Query: 515 PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVR 574
           P+   + TLL+ACR Y+NL   E  A  LI  D  ++ +YV L+N++AG   W+D  RVR
Sbjct: 408 PHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVR 467

Query: 575 SMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
             MK+  + K PG SWIE++GV+HEF   D+   Q+  I+  L  +
Sbjct: 468 RWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQL 513



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 101/200 (50%), Gaps = 11/200 (5%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLML-DNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
           WNA++  Y       +AL +F  M+ +  V  +  + S VL  CS L  +  G QIH   
Sbjct: 208 WNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWC 267

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
            K+    +L +   L+S+Y +CG L  A +LF +M  RD V++N+MI GY + G+ + A 
Sbjct: 268 MKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAI 327

Query: 206 ELFDSMPIR--ERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLIS-----WNSML 257
            LF+ M     E N I++ +VL   A + +GL  F  + FE M E   I      ++ M+
Sbjct: 328 NLFERMKDEGVEPNWITFVAVLT--ACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMV 385

Query: 258 HGCVKCGKMDDAQALFDKMP 277
               + GK++ A  L   MP
Sbjct: 386 DLLCRAGKLERAVDLIRSMP 405



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 108/245 (44%), Gaps = 46/245 (18%)

Query: 9   QPCNSTQSTLLLLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLT 65
           QP  ST S++LL   C  L+ +    QIH   +     +N  + T LV+ +    C  L+
Sbjct: 238 QPNASTLSSVLL--GCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCK--CGDLS 293

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
              + +F + H     +D   WNA+I  Y+   D KEA+ +F  M D GV  +  +   V
Sbjct: 294 SACK-LFGEMHT----RDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAV 348

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           L AC   GL + G                          +RC   E  ++L+   GI   
Sbjct: 349 LTACIHTGLCDFG--------------------------IRC--FEGMQELY---GIEPR 377

Query: 186 VS-YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244
           V  Y+ M+D   ++G +E A +L  SMP  E +  ++ ++L    ++   L+FA     K
Sbjct: 378 VDHYSCMVDLLCRAGKLERAVDLIRSMPF-EPHPSAYGTLLAA-CRVYKNLEFAELAAGK 435

Query: 245 MPERD 249
           + E+D
Sbjct: 436 LIEKD 440


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 215/625 (34%), Positives = 336/625 (53%), Gaps = 31/625 (4%)

Query: 19  LLLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
            + + C  ++ V   +  HA    TGF+ N  +   LVA +S   C  L++ AR +F + 
Sbjct: 132 FVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSR--CGSLSD-ARKVFDEM 188

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDN-GVSVDKFSASLVLKACSRLGL 134
             +    D   WN+II++Y+    PK AL MF  M +  G   D  +   VL  C+ +G 
Sbjct: 189 PVW----DVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGT 244

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
              G Q HG         ++F+ NCL+ +Y + G ++ A  +F  M ++D VS+N+M+ G
Sbjct: 245 RSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAG 304

Query: 195 YVKSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQLKSG---LQFAWQIFEKMPERD 249
           Y + G  E A  LF+ M   +   ++++W++ ++GYAQ   G   L    Q+     + +
Sbjct: 305 YSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPN 364

Query: 250 LISWNSMLHGCVKCGKMDDAQALF---DKMP---KRDVVSWANM-----IDGYAKLGRVD 298
            ++  S+L GC   G +   + +     K P   +++     NM     ID YAK  +VD
Sbjct: 365 EVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVD 424

Query: 299 IARRLFDEM-PK-RDVVACNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVL 355
           IAR +FD + PK RDVV    M+GGY ++G + KALE+   M + +    P+  ++   L
Sbjct: 425 IARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCAL 484

Query: 356 SAIAQLGHIDKGVAIHRY-LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
            A A L  +  G  IH Y L   Q ++       LIDMY+KCG I +A  VF+ + + + 
Sbjct: 485 VACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNE 544

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
             W +++ G  +HG GE A  +  EM R+  + D +T   +L AC+H+G++ +G+  F  
Sbjct: 545 VTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNR 604

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534
           M+    + P  +HY C+VD+LGRAG + AA  LIE+MPMEP  V+W  LLS CR +  + 
Sbjct: 605 MKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVE 664

Query: 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           +GE  AK +  + S+N  SY LLSNM+A  G W D  R+RS+M+ + +KK PGCSW+E  
Sbjct: 665 LGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGI 724

Query: 595 GVVHEFFVRDKSRLQVRDIYYMLDN 619
                FFV DK+    ++IY +L +
Sbjct: 725 KGTTTFFVGDKTHPHAKEIYQVLSD 749



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 169/538 (31%), Positives = 268/538 (49%), Gaps = 43/538 (7%)

Query: 17  TLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPC-----TPLTEFARYI 71
           T   + KCKT++ V  IH ++++ G I   +LT+ L++++ S  C     + L  F    
Sbjct: 31  TPPFIHKCKTISQVKLIHQKLLSFG-ILTLNLTSHLISTYISLGCLSHAVSLLRRFPPSD 89

Query: 72  FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
              YH          WN++I++Y +     + L  FCLM     + D ++   V KAC  
Sbjct: 90  AGVYH----------WNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGE 139

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
           +  +  G   H L R   F S++F+ N L+++Y RCG L  AR++FD+M + D VS+NS+
Sbjct: 140 ISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSI 199

Query: 192 IDGYVKSGNIESARELFDSMPIR---ERNLISWNSVLNGYAQLKS---GLQF-AWQIFEK 244
           I+ Y K G  + A E+F  M        + I+  +VL   A + +   G QF  + +  +
Sbjct: 200 IESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSE 259

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
           M +   +  N ++    K G MD+A  +F  MP +DVVSW  M+ GY+++GR + A RLF
Sbjct: 260 MIQNMFVG-NCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLF 318

Query: 305 DEMP----KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
           ++M     K DVV  +A + GY + G   +AL +   M     + P++ +L+ VLS  A 
Sbjct: 319 EQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSS-GIKPNEVTLISVLSGCAS 377

Query: 361 LGHIDKGVAIHRYLEKDQFSL--NGKHG------VALIDMYSKCGSIENAIKVFEQI--E 410
           +G +  G  IH Y  K    L  NG HG        LIDMY+KC  ++ A  +F+ +  +
Sbjct: 378 VGALMHGKEIHCYAIKYPMDLRKNG-HGDENMVINQLIDMYAKCKKVDIARAMFDSLSPK 436

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEM--ERLSIEPDDITFTGLLNACAHAGLVKEG 468
           +  V  W  MI G + HG    A +LL EM  E     P+  T +  L ACA    +  G
Sbjct: 437 ERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIG 496

Query: 469 LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
                   R  +    L    C++D+  + G I  AR + ++M ME N+V W +L++ 
Sbjct: 497 KQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNM-MEKNEVTWTSLMTG 553


>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
          Length = 1031

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 196/589 (33%), Positives = 333/589 (56%), Gaps = 22/589 (3%)

Query: 12   NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
            NS +S   ++R    +  + ++HA  I +G     +  +K++ S++     P   FA  +
Sbjct: 455  NSVKSFFNIVR----MEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAI--LQPDLVFAHKV 508

Query: 72   FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
            F +     E    FLWN +I+  +    P +A+  +      G+  D  +   +LKAC+R
Sbjct: 509  FDQI----EAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACAR 564

Query: 132  LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
            +  + EG Q+H  + K+   SD+F+ N LI LY  CG L +AR +FD+M ++D VS+NS+
Sbjct: 565  INALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSL 624

Query: 192  IDGYVKSGNIESARELFDSM--------PIRERNLISWNSVLNGYAQLKSGLQFAWQIFE 243
            I GY +    +    LF  M         +    ++S  + L  Y+     +++   I +
Sbjct: 625  ICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRY---IED 681

Query: 244  KMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRL 303
               E D+   N+++    + G++  A+ +F  M  R++V+   MI  YAK   +  AR++
Sbjct: 682  YCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKI 741

Query: 304  FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
            FD++PK+D+++ ++M+ GY +  +   ALEIF  MQ    + PD   +  V+S+ A LG 
Sbjct: 742  FDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQ-RAKVKPDAIVIASVVSSCAHLGA 800

Query: 364  IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
            +D G  +H Y+ ++    +     +LIDMY KCGS + A++VF+++++     WN++I G
Sbjct: 801  LDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIG 860

Query: 424  LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
            LA +G  + + +L   M      P+ +TF G+L ACA+A LV+EGL  FE M+R++ LEP
Sbjct: 861  LANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEP 920

Query: 484  ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
            +++HYGC+VD+LGRAG +E A   I +MP++P+ V+WR LL +C  + ++ + E V K L
Sbjct: 921  QMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKL 980

Query: 544  IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
              ++ SNS +Y LLSN +A    W++A  VR  M + +++K PGCS +E
Sbjct: 981  NELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAVE 1029



 Score =  250 bits (639), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 137/425 (32%), Positives = 240/425 (56%), Gaps = 26/425 (6%)

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA--- 229
           A Q+FD    R    +++++  Y    + + A +LF            W++  + YA   
Sbjct: 47  AHQVFD----RRPTPWHALLKAYSHGPHPQDALQLFRHA--------RWHAADDTYAFTF 94

Query: 230 QLKSGLQFAWQ---------IFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRD 280
            LK+     W          +  K  E       ++++  + CG + D++  F++MP ++
Sbjct: 95  ALKACAGLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKN 154

Query: 281 VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQC 340
            VSW  +I G+A  G V+ AR LF+ MP R+VV+ + M+ GY R    ++A+ +F  M  
Sbjct: 155 AVSWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMA 214

Query: 341 ELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE 400
           E  + P + +++ V+ A++ +G I  G A+H Y EK+    + + G +LID+Y+K GSI+
Sbjct: 215 E-GISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQ 273

Query: 401 NAIKVFEQIEDG-SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
           N+++VF+++ D  ++  W ++I+G A+HGL   A +L  +M R  I P+ ITF  +L+AC
Sbjct: 274 NSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHAC 333

Query: 460 AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI 519
           +H GLV++G+  F+ M   + + P+++H+GC++D+LGRAG +  A  +I D P+E N  +
Sbjct: 334 SHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATV 393

Query: 520 WRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579
           WRTLL  C  Y  + +GE   K ++ ++      +V+LSNM   L  ++DA  VR ++ +
Sbjct: 394 WRTLLGCCSKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRKLVDQ 453

Query: 580 RNLKK 584
           RN  K
Sbjct: 454 RNSVK 458



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 206/376 (54%), Gaps = 21/376 (5%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           + P  W+A++K YSHG  P++AL +F     +    D ++ +  LKAC+ LG     +Q+
Sbjct: 53  RRPTPWHALLKAYSHGPHPQDALQLFRHARWHAAD-DTYAFTFALKACAGLGWPRCCMQL 111

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           HGL+ +  F    ++   L+++Y+ CG L  +R  F++M ++++VS+N +I G+   G +
Sbjct: 112 HGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWGEV 171

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----ISWNSML 257
           E AR LF+ MP   RN++SW+ +++GY +    ++ A  +F +M    +    I+  +++
Sbjct: 172 EYARLLFERMPC--RNVVSWSGMIDGYTRACRPVE-AVALFRRMMAEGISPSEITVLAVV 228

Query: 258 HGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEM-PKRDV 312
                 GK+   +AL     K     DV    ++ID YAK+G +  + R+FDEM  +R++
Sbjct: 229 PALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNL 288

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           V+  +++ G+  +G S+KA+E+F +M+    + P+  + + VL A +  G +++GVA  +
Sbjct: 289 VSWTSIISGFAMHGLSVKAVELFADMR-RAGIRPNRITFLSVLHACSHGGLVEQGVAFFK 347

Query: 373 YLEKDQFSLNG--KHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHG- 428
            +   ++++N   KH   +IDM  + G +  A ++      + +   W  ++   + +G 
Sbjct: 348 SMIY-EYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGE 406

Query: 429 --LGELAFDLLMEMER 442
             +GE     ++ +ER
Sbjct: 407 VEMGERTMKKILALER 422



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 129/548 (23%), Positives = 236/548 (43%), Gaps = 66/548 (12%)

Query: 32  QIHARMITTGFIKNTHLTTKLV-------------ASFSSSPC-------TPLTEFARYI 71
           Q+H  ++  GF   T++ T LV              +F   P          +T FA + 
Sbjct: 110 QLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWG 169

Query: 72  FFKYHAFREKKDP----FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
             +Y     ++ P      W+ +I  Y+    P EA+ +F  M+  G+S  + +   V+ 
Sbjct: 170 EVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVP 229

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM-GIRDSV 186
           A S +G I  G  +HG   K     D+ + N LI LY + G ++ + ++FD+M   R+ V
Sbjct: 230 ALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLV 289

Query: 187 SYNSMIDGYVKSGNIESARELFDSM---PIRERNLISWNSVLNGYAQ---LKSGLQ-FAW 239
           S+ S+I G+   G    A ELF  M    IR  N I++ SVL+  +    ++ G+  F  
Sbjct: 290 SWTSIISGFAMHGLSVKAVELFADMRRAGIRP-NRITFLSVLHACSHGGLVEQGVAFFKS 348

Query: 240 QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVD 298
            I+E     D+  +  ++    + G++ +A+ +    P + +   W  ++   +K G V+
Sbjct: 349 MIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVE 408

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA---SLVIVL 355
           +  R       + ++A     GG            +  NM  EL    D      LV   
Sbjct: 409 MGERTM-----KKILALEREFGG---------DFVVLSNMLTELRRFSDAEIVRKLVDQR 454

Query: 356 SAIAQLGHIDKGVAIHR----YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED 411
           +++    +I +  AI R    Y+    ++ +      L         +  A KVF+QIE 
Sbjct: 455 NSVKSFFNIVRMEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEA 514

Query: 412 GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC 471
            +   WN +I GLA       A     + +   + PD++TF  +L ACA    + EG   
Sbjct: 515 PTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGE-- 572

Query: 472 FELMRRIHKLE--PELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLL---S 525
            ++   I KL    ++     ++ +    G++  AR++ ++M ++  DV+ W +L+   S
Sbjct: 573 -QMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVK--DVVSWNSLICGYS 629

Query: 526 ACRNYENL 533
            C  ++++
Sbjct: 630 QCNRFKDI 637


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 219/624 (35%), Positives = 339/624 (54%), Gaps = 56/624 (8%)

Query: 10  PCNSTQSTLLL--LRKCKTLNDVNQIHARMITTGFIKN-THLTTKLVASFSSSPCTPLTE 66
           P  S Q   LL      K+     Q+HA MI+   ++N T+L TKL A ++   C  +++
Sbjct: 56  PLTSLQCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAG--CGLMSQ 113

Query: 67  FARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVL 126
            A  IF         K+ FLWN +I+ Y+    P ++LV++  ML  G   D F+   VL
Sbjct: 114 -AEVIFDGIVL----KNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVL 168

Query: 127 KACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSV 186
           KAC  L L+E G ++H  +      SD+++ N L+++Y                      
Sbjct: 169 KACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYA--------------------- 207

Query: 187 SYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ-LKSGLQFAWQIFEKM 245
                     K G++ +AR +FD M   ER+L SWN++++GYA+   SG  F   +F+ M
Sbjct: 208 ----------KFGDMGTARMVFDRMA--ERDLTSWNTMISGYAKNADSGTAFL--VFDLM 253

Query: 246 PERDLISWNSMLHG---------CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR 296
            +  L +  + L G          VK GK+    A+ + +   +     ++I+ Y     
Sbjct: 254 GKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNC 313

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           +  ARRLF+ +  +D V+ N+M+ GY RNG + ++L +F  M  +    PD  + + VL 
Sbjct: 314 MVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGS-GPDQVTFIAVLG 372

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
           A  Q+  +  G++IH YL K  F  N   G AL+DMYSKCGS+  + +VF+++ D S+  
Sbjct: 373 ACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVS 432

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           W+AM+ G  +HG G  A  +L  M+  S+ PD+  FT +L+AC+HAGLV EG   F  M 
Sbjct: 433 WSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKME 492

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
           + + ++P L HY CMVD+LGRAGH++ A  +I  M ++P   IW  LL+A R ++N+ + 
Sbjct: 493 KEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLA 552

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
           E  A+ +  M+    SSY+ LSN++A    W+D  RVR+M++ + LKK PGCS+IEL+ +
Sbjct: 553 EISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNM 612

Query: 597 VHEFFVRDKSRLQVRDIYYMLDNM 620
           VH F V DKS  Q  DIY  L+ +
Sbjct: 613 VHRFLVGDKSHQQTEDIYAKLNEL 636


>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
          Length = 618

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 191/550 (34%), Positives = 321/550 (58%), Gaps = 13/550 (2%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D   W A++  Y+      +A  +F    D   +V  ++A  +L   +R G ++E    
Sbjct: 64  RDVVSWTALVAAYARQGMLHDARALFD-RPDARRNVVTWTA--LLSGYARAGRVDEA--- 117

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
             L +++    ++   N ++  Y   G +  A  LFD M +RD+ S+N ++   V+SGN+
Sbjct: 118 EALFQRMP-ERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVRDAGSWNILLAALVRSGNM 176

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
           + AR+LFD MP  ERN+++W +++ G A+  S +  A  +F+ MPER+++SWN+M+ G  
Sbjct: 177 DKARKLFDRMP--ERNVMAWTTMVAGIARSGS-VDEARALFDGMPERNVVSWNAMISGYA 233

Query: 262 KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
           +  ++D+A  LF KMP RD+ SW  MI G+ +   ++ A+ LFD+MP+R+V+    MM G
Sbjct: 234 RNHRIDEAHDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLFDKMPRRNVITWTTMMNG 293

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
           Y+++  S  AL+IF+ M  E  + P+  + +  + A + L  + +G  +H+ + K  F  
Sbjct: 294 YLQSMQSETALQIFNGMLVE-GIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQF 352

Query: 382 NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEME 441
           +      L+++Y+KCG I  A KVF+  ++  V  WN MI   A HG+G  A  L  +M+
Sbjct: 353 DTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQ 412

Query: 442 RLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHI 501
               +P+D+T+ GLL+AC+H+GLV EGL  FE M +   +    +HY C++D+  RAG +
Sbjct: 413 EKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRL 472

Query: 502 EAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF 561
             A+ LI  + +EP+  +W  LL  C ++ N ++G+  A++L+  + +N+ +Y LL N++
Sbjct: 473 GDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLLCNIY 532

Query: 562 AGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMW 621
           A  G W +A ++RS M +R LKK PGCSWIE+E  VH F  RDKS  +   I  +L ++ 
Sbjct: 533 ASAGKWKEAAKIRSEMNDRGLKKQPGCSWIEVENKVHVFVSRDKSHSESDLINSLLQDI- 591

Query: 622 TPDSVATSCT 631
             D +  +CT
Sbjct: 592 -HDIMRMACT 600



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 119/242 (49%), Gaps = 17/242 (7%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +++   W  ++  Y   +  + AL +F  ML  G+  ++ +    + ACS L  + EG Q
Sbjct: 281 RRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQQ 340

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H ++ K +F  D F+++ L++LY +CG +  AR++FD    +D +S+N MI  Y   G 
Sbjct: 341 VHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHHGV 400

Query: 201 IESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLIS----- 252
              A  L++ M  +  + N +++  +L+  +   SGL     +IFE M +   I+     
Sbjct: 401 GVEAIHLYEKMQEKGYKPNDVTYVGLLSACSH--SGLVDEGLRIFEYMVKDRSIAVRDEH 458

Query: 253 WNSMLHGCVKCGKMDDAQAL--FDKMPKRDVVSWANMIDGYAKLGRVDI----ARRLFDE 306
           +  ++  C + G++ DA+ L  F K+     V W  ++ G    G   I    AR L + 
Sbjct: 459 YTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTV-WNALLGGCNSHGNESIGDLAARNLLEA 517

Query: 307 MP 308
            P
Sbjct: 518 EP 519



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 98/226 (43%), Gaps = 27/226 (11%)

Query: 292 AKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASL 351
           A  GRV  ARRLFD  P RDVV+  A++  Y R G    A  +FD         PD    
Sbjct: 46  AAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFD--------RPDARRN 97

Query: 352 VI----VLSAIAQLGHIDKGVAI-HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVF 406
           V+    +LS  A+ G +D+  A+  R  E++  S N      +++ Y+  G + +A  +F
Sbjct: 98  VVTWTALLSGYARAGRVDEAEALFQRMPERNVVSWN-----TMLEAYTSAGRVRDAWTLF 152

Query: 407 EQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVK 466
           + +       WN ++  L   G  + A  L   M   ++    + +T ++   A +G V 
Sbjct: 153 DGMPVRDAGSWNILLAALVRSGNMDKARKLFDRMPERNV----MAWTTMVAGIARSGSVD 208

Query: 467 EGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP 512
           E    F+ M      E  +  +  M+    R   I+ A +L   MP
Sbjct: 209 EARALFDGMP-----ERNVVSWNAMISGYARNHRIDEAHDLFMKMP 249



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 21/232 (9%)

Query: 27  LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFL 86
           L++  Q+H  +  T F  +T + + L+  ++   C  +   AR +F       ++KD   
Sbjct: 335 LSEGQQVHQMICKTSFQFDTFIESTLMNLYAK--CGEI-RLARKVF----DLSKEKDVIS 387

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL- 145
           WN +I  Y+H     EA+ ++  M + G   +  +   +L ACS  GL++EGL+I   + 
Sbjct: 388 WNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMV 447

Query: 146 --RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS-YNSMIDGYVKSGNIE 202
             R +A   + +   CLI L  R G L  A++L   + +  S + +N+++ G    GN  
Sbjct: 448 KDRSIAVRDEHY--TCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNES 505

Query: 203 ----SARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL 250
               +AR L ++ P    N  ++  + N YA      + A +I  +M +R L
Sbjct: 506 IGDLAARNLLEAEP---NNAGTYTLLCNIYASAGKWKEAA-KIRSEMNDRGL 553


>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 199/535 (37%), Positives = 301/535 (56%), Gaps = 42/535 (7%)

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLY-VRCGYLEFARQLFDKMGIRD 184
           L++C      E+  +IH  L       D F+    +  Y V    +++A  +F  +   D
Sbjct: 34  LQSCKS---TEDLKKIHAQLIITGQIKDTFIATKTVESYAVSARNIDYAFWVFVGINYPD 90

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYA------------- 229
           S S+ +MI G+V++ N E A E +  M  R  E N  ++  VL  Y              
Sbjct: 91  SYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVHG 150

Query: 230 --------------------QLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDD 268
                                LK G +  A  +F++MP  ++++WN+M+ GC  CG  + 
Sbjct: 151 KLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTER 210

Query: 269 AQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYS 328
           A+ LF +MP+R+V SW  ++ GY+KLG VDIAR LFD MP+RDVV+  +M+  YV+NG +
Sbjct: 211 ARRLFGEMPERNVGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRA 270

Query: 329 MKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVA 388
            +ALE+F  M     +  D   +  +LSA AQ+G +D G  IH Y+++ +   +     A
Sbjct: 271 AEALELFKEMMLA-GVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTA 329

Query: 389 LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD 448
           L+DMY+KCG I+ A  VF  +   ++  WNAM++GLAIHG G  A +L  +ME   + P+
Sbjct: 330 LVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPN 389

Query: 449 DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLI 508
           DITF  +L+AC+H G V+EG   F  M +   + P+++HYGCMVDIL R G I  A+ +I
Sbjct: 390 DITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMI 449

Query: 509 EDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWN 568
             MP+EPN VIW  LL+AC+ +   NVGE V  ++  + S +   YVLLSN+FA    WN
Sbjct: 450 RTMPLEPNVVIWGALLNACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLLSNIFAAKSQWN 509

Query: 569 DARRVRSMMKERNL-KKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWT 622
           +  + R MMK+  + KK+PG S IEL+ VVH+FF  D+   + R++  +++ + T
Sbjct: 510 EVEKTRKMMKQMGVEKKIPGYSSIELDSVVHDFFAEDRLHSKWREVSTVIERLNT 564



 Score =  234 bits (598), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 151/479 (31%), Positives = 250/479 (52%), Gaps = 57/479 (11%)

Query: 12  NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
           NS   TL  L+ CK+  D+ +IHA++I TG IK+T + TK V S++ S        AR I
Sbjct: 25  NSNYKTLSALQSCKSTEDLKKIHAQLIITGQIKDTFIATKTVESYAVS--------ARNI 76

Query: 72  FFKYHAFR--EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKAC 129
            + +  F      D + W  +I+ +    +P++AL  + LM   GV ++KF+   VLKA 
Sbjct: 77  DYAFWVFVGINYPDSYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKAY 136

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
                 +EG  +HG L KV F  D+F +N LI +Y++CG +  A  LFD+M   + V++N
Sbjct: 137 GLRPSYQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTWN 196

Query: 190 SMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERD 249
           +MI G    G+ E AR LF  MP  ERN+ SWN+V+ GY++L   +  A  +F+ MPERD
Sbjct: 197 TMITGCFGCGDTERARRLFGEMP--ERNVGSWNAVVGGYSKL-GHVDIARSLFDLMPERD 253

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMP-------------------------------- 277
           ++SW SM+   V+ G+  +A  LF +M                                 
Sbjct: 254 VVSWGSMISAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSACAQIGALDMGRWIHA 313

Query: 278 -------KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMK 330
                  + DV     ++D YAK G +D A  +F+ MP++++ + NAM+ G   +G+   
Sbjct: 314 YMKRSKLRNDVFLDTALVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFA 373

Query: 331 ALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK--HGVA 388
           ALE+F  M+    + P+D + V VLSA + +G +++G      ++K +F++  K  H   
Sbjct: 374 ALELFKQME-STGVGPNDITFVAVLSACSHIGSVEEGWKKFNQMDK-EFNITPKVEHYGC 431

Query: 389 LIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE 446
           ++D+  + G I  A ++   +  + +V  W A++N   +HG   +  D++  +++L  E
Sbjct: 432 MVDILCRQGLINEAKEMIRTMPLEPNVVIWGALLNACKVHGYTNVGEDVVGYIQKLVSE 490


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 228/685 (33%), Positives = 345/685 (50%), Gaps = 86/685 (12%)

Query: 14  TQSTLLLLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY 70
           +++ + L ++C  L D     Q+   +I  G   N +    L+  +S   C  +TE AR 
Sbjct: 57  SRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYS--ICGNVTE-ARQ 113

Query: 71  IFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS 130
           IF       E K    WNA+I  Y+     KEA  +F  M+D G+     +   VL ACS
Sbjct: 114 IFDSV----ENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACS 169

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
               +  G ++H  +    F SD  +   L+S+YV+ G ++ ARQ+FD + IRD  ++N 
Sbjct: 170 SPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNV 229

Query: 191 MIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNG-------------YAQ-LKSG 234
           M+ GY KSG+ E A ELF  M     + N IS+ S+L+G             +AQ + +G
Sbjct: 230 MVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAG 289

Query: 235 L--------------------QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFD 274
           L                    + A ++F+ M  RD++SW  M+ G  + G ++DA  LF 
Sbjct: 290 LVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFA 349

Query: 275 KM------PKR---------------------------------DVVSWANMIDGYAKLG 295
            M      P R                                 D++    ++  YAK G
Sbjct: 350 TMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCG 409

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
            +  AR++FD MP+RDVV+ +AM+G YV NGY  +A E F  M+    + PD  + + +L
Sbjct: 410 AIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMK-RSNIEPDGVTYINLL 468

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
           +A   LG +D G+ I+    K     +   G ALI M +K GS+E A  +F+ +    V 
Sbjct: 469 NACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVI 528

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            WNAMI G ++HG    A  L   M +    P+ +TF G+L+AC+ AG V EG   F  +
Sbjct: 529 TWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYL 588

Query: 476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNV 535
                + P ++ YGCMVD+LGRAG ++ A  LI+ MP++P   IW +LL ACR + NL+V
Sbjct: 589 LEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDV 648

Query: 536 GEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG 595
            E  A+  + +D  + + YV LS+M+A  GMW +  +VR +M+ R ++K  GC+WIE+ G
Sbjct: 649 AERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAG 708

Query: 596 VVHEFFVRDKSRLQVRDIYYMLDNM 620
            VH F V D+S   V +IY  L  +
Sbjct: 709 KVHTFVVEDRSHPLVGEIYAELARL 733



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 143/579 (24%), Positives = 246/579 (42%), Gaps = 108/579 (18%)

Query: 112 DNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLE 171
           + G  +D  +   + + C+ L     G Q+   + +     +++  N LI LY  CG + 
Sbjct: 50  EGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVT 109

Query: 172 FARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYA 229
            ARQ+FD +  +  V++N++I GY + G+++ A  LF  M     E ++I++ SVL+  +
Sbjct: 110 EARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACS 169

Query: 230 QLKSGLQFAWQIFEKMPERDLIS----WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWA 285
              +GL +  ++  ++     +S      +++   VK G MDDA+ +FD +  RDV ++ 
Sbjct: 170 S-PAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFN 228

Query: 286 NMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLH 345
            M+ GYAK G  +                               KA E+F  MQ ++ L 
Sbjct: 229 VMVGGYAKSGDWE-------------------------------KAFELFYRMQ-QVGLK 256

Query: 346 PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKV 405
           P+  S + +L        +  G A+H          + +   +LI MY+ CGSIE A +V
Sbjct: 257 PNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRV 316

Query: 406 FEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLV 465
           F+ ++   V  W  MI G A +G  E AF L   M+   I+PD IT+  ++NACA +  +
Sbjct: 317 FDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANL 376

Query: 466 KEGLLCFELMRRIHKLEPELQHYG-------CMVDILGRAGHIEAARNLIEDMP------ 512
                     R IH  + ++  +G        +V +  + G I+ AR + + MP      
Sbjct: 377 NHA-------REIHS-QVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVS 428

Query: 513 ----------------------------MEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
                                       +EP+ V +  LL+AC +   L+VG  +    I
Sbjct: 429 WSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAI 488

Query: 545 GMDSSNSSSYVLLSN----MFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
             D     S+V L N    M A  G    AR +   M  R++        I    ++  +
Sbjct: 489 KAD---LVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDV--------ITWNAMIGGY 537

Query: 601 FVRDKSRLQVRDIYYMLDNMWTPDSVA-----TSCTHYG 634
            +   +R  +     ML   + P+SV      ++C+  G
Sbjct: 538 SLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAG 576


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 209/610 (34%), Positives = 329/610 (53%), Gaps = 74/610 (12%)

Query: 14  TQSTLLLLRKCKT---LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY 70
           +Q T+L L   K+   L+ + Q+HA  + TG  ++ +++  LV  +++   + L  FA  
Sbjct: 27  SQKTILDLLNTKSSTSLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLN-FALK 85

Query: 71  IFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS 130
           +F     +    + F++N IIK      +P +A+  +  M+      +KF+   + KAC+
Sbjct: 86  VF----EYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACT 141

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
                EEG+Q+H  + K     D         +++R                      ++
Sbjct: 142 AAEAAEEGVQVHAHVIKQGLSGD---------VHIR----------------------SA 170

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL 250
            I  Y   G +E AR +              NS                         D+
Sbjct: 171 GIQMYGSFGEVEGARRMLGE---------DGNS-------------------------DV 196

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
           I +N+M+ G +KCG+++ A+ LF  M  ++V SW  M+ G AK G ++ AR LF+EM ++
Sbjct: 197 ICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEK 256

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
           + ++ +AM+ GY++ GY  +ALE+F+ MQ E  + P    L  VL+A A LG +D+G  I
Sbjct: 257 NEISWSAMIDGYIKGGYYKEALEVFNVMQRE-EIRPRKFVLSSVLAACANLGALDQGRWI 315

Query: 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
           H Y+  +  S +   G AL+DMY+KCG ++ A  VFE++E   V  WNAMI GL +HG  
Sbjct: 316 HAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRA 375

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
           E A +L  +M++    P+ IT  G+L+ACAH+G+V EGL  F  M  ++ +EP ++HYGC
Sbjct: 376 EDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGC 435

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           +VD+LGRAG +  A  ++  MPMEP+  +W  LL ACR + ++ +GE V K L+ ++  N
Sbjct: 436 VVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQN 495

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQV 610
           S  Y LLSN++A  G W+D   VR +MKER +K   G S I+ +GVVHEF + D S  Q+
Sbjct: 496 SGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQM 555

Query: 611 RDIYYMLDNM 620
           ++IY ML NM
Sbjct: 556 KNIYLMLKNM 565


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 205/624 (32%), Positives = 348/624 (55%), Gaps = 26/624 (4%)

Query: 10  PCNSTQSTLLL--LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF 67
           P  ST +  +L  L  CK+LN + Q+HA ++ T  + N  L + L     SS     +  
Sbjct: 6   PIASTAANTILEKLSFCKSLNHIKQLHAHILRT--VINHKLNSFLFNLSVSS----SSIN 59

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
             Y    + +     +  ++N  ++  S   +P+  ++ +  +   G  +D+FS   +LK
Sbjct: 60  LSYALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILK 119

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           A S++  + EG+++HG+  K+A   D F++   + +Y  CG + +AR +FD+M  RD V+
Sbjct: 120 AVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVT 179

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQL--KSG-LQFAWQIFEK 244
           +N+MI+ Y + G ++ A +LF+ M  ++ N++    +L        ++G +++   I+E 
Sbjct: 180 WNTMIERYCRFGLVDEAFKLFEEM--KDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEF 237

Query: 245 MPERDLISWNSMLHGCVK----CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIA 300
           + E D+     +L   V      G MD A+  F KM  R++     M+ GY+K GR+D A
Sbjct: 238 LIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDA 297

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
           + +FD+  K+D+V    M+  YV + Y  +AL +F+ M C   + PD  S+  V+SA A 
Sbjct: 298 QVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCS-GIKPDVVSMFSVISACAN 356

Query: 361 LGHIDKGVAIHRYLE----KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
           LG +DK   +H  +     + + S+N     ALI+MY+KCG ++    VFE++   +V  
Sbjct: 357 LGILDKAKWVHSCIHVNGLESELSINN----ALINMYAKCGGLDATRDVFEKMPRRNVVS 412

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           W++MIN L++HG    A  L   M++ ++EP+++TF G+L  C+H+GLV+EG   F  M 
Sbjct: 413 WSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMT 472

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
             + + P+L+HYGCMVD+ GRA  +  A  +IE MP+  N VIW +L+SACR +  L +G
Sbjct: 473 DEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELG 532

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
           +  AK ++ ++  +  + VL+SN++A    W D R +R +M+E+N+ K  G S I+  G 
Sbjct: 533 KFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGK 592

Query: 597 VHEFFVRDKSRLQVRDIYYMLDNM 620
            HEF + DK   Q  +IY  LD +
Sbjct: 593 SHEFLIGDKRHKQSNEIYAKLDEV 616


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 219/694 (31%), Positives = 354/694 (51%), Gaps = 87/694 (12%)

Query: 4   SANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTP 63
           S N N    +  S L L  + K++ D  ++ + + ++G + +  L  KLV  F    C  
Sbjct: 143 SQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLV--FMYVKCGD 200

Query: 64  LTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSAS 123
           L E  R +F K      +   FLWN +I  YS   +  E++ +F  ML+ G+  + ++ S
Sbjct: 201 LKE-GRMVFDKL----SESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFS 255

Query: 124 LVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183
            +LK  + +  +EEG Q+HGL+ K+ F S   + N LIS Y     +  A++LFD++  R
Sbjct: 256 SILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDR 315

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPI------------------------------ 213
           D +S+NSMI GYVK+G  +   E+F  M +                              
Sbjct: 316 DVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLH 375

Query: 214 --------RERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGK 265
                    +R +   N++L+ Y++    L  A ++FE+M E+ ++SW SM+ G V+ G 
Sbjct: 376 SYSIKAATLDREVRFNNTLLDMYSKC-GDLNSAIRVFERMDEKTVVSWTSMITGYVREGL 434

Query: 266 MDDAQALFDKMPKRDVV-------------------------------------SWAN-- 286
            D A  LFD+M  R VV                                     S+ +  
Sbjct: 435 SDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNA 494

Query: 287 MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP 346
           + D YAK G +  A  +F  M K+DV++ N M+GGY +N    +AL +F  MQ E    P
Sbjct: 495 LTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES--KP 552

Query: 347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVF 406
           D  ++  +L A A L  +DKG  IH Y  ++ +S +     A++DMY KCG +  A  +F
Sbjct: 553 DGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLF 612

Query: 407 EQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVK 466
           + I +  +  W  MI G  +HG G  A +   +M    IEPD+++F  +L AC+H+GL+ 
Sbjct: 613 DMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLD 672

Query: 467 EGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           EG   F +M++  ++EP L+HY CMVD+L R G++  A   I+ MP++P+  IW  LL  
Sbjct: 673 EGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCG 732

Query: 527 CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLP 586
           CR + ++ + E VA+ +  ++  N+  YVLL+N++A    W + +++R  + +R LKK P
Sbjct: 733 CRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNP 792

Query: 587 GCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           GCSWIE++G ++ F   D S+ Q + I  +L  +
Sbjct: 793 GCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRL 826


>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 554

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 194/523 (37%), Positives = 304/523 (58%), Gaps = 13/523 (2%)

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA 149
           ++K+ +      + L +F  +   G+  D F+  +VLK+  RL  + EG ++HG   K  
Sbjct: 1   MLKSLAESKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTG 60

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD 209
             SD ++ N L+ +Y   G +E   ++FD+M  RD VS+N +I  YV  G  E A  +F 
Sbjct: 61  LESDSYVCNSLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQ 120

Query: 210 SMPIRERNLISWN----SVLNGYAQLKSGLQFAWQIFEKMP---ERDLISWNSMLHGCVK 262
            M  RE NL +      S L+  + LK+ L+   +I+  +    E  + + N+++    K
Sbjct: 121 RMS-RESNLKADEGTIVSTLSACSVLKN-LEIGERIYRYVVTEFEMSVRTGNALVDMFCK 178

Query: 263 CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGY 322
           CG +D A+A+FD M  ++V  W +M+ GY   GR D AR LF+  P +DVV   AMM GY
Sbjct: 179 CGCLDKARAIFDSMRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVKDVVLWTAMMNGY 238

Query: 323 VRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN 382
           V+     +ALE+F  MQ    + PD+  LV +L+  AQ G +++G  IH Y+ +++ +++
Sbjct: 239 VQFNRFDEALELFRCMQTA-RIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIRENRVTVD 297

Query: 383 GKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMER 442
              G AL+DMY+KCG IE A+ VF ++++     W ++I GLA +G+   A DL  EME 
Sbjct: 298 KVVGTALVDMYAKCGCIETALGVFYEMKERDTASWTSLIYGLATNGMSGRALDLYYEMEN 357

Query: 443 LSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIE 502
           + +  DDITF  +L AC+H G V EG   F  M   HK++P+ +HY C++D+L RAG ++
Sbjct: 358 VGVRLDDITFVAVLTACSHGGFVAEGRRIFYSMTERHKIQPKSEHYSCLIDLLCRAGLLD 417

Query: 503 AARNLIEDMPMEPNDV---IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559
            A  LI+ M  E +     ++ +LLSA RNY N+ + E VA+ L  ++ S+SS++ LL++
Sbjct: 418 EAEELIDKMHGERDKTLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLAS 477

Query: 560 MFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
           ++A    W D   VR  MK+  ++K PGCS IE++GV HEF V
Sbjct: 478 VYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEVDGVSHEFIV 520


>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
 gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
          Length = 566

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 192/571 (33%), Positives = 325/571 (56%), Gaps = 18/571 (3%)

Query: 30  VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNA 89
           + ++HA  I +G     +  +K++ S++     P   FA  +F +     E    FLWN 
Sbjct: 4   IKRLHAYYIVSGLYNCHYAMSKVLRSYA--ILQPDLVFAHKVFDQI----EAPTTFLWNI 57

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA 149
           +I+  +    P +A+  +      G+  D  +   +LKAC+R+  + EG Q+H  + K+ 
Sbjct: 58  LIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLG 117

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD 209
             SD+F+ N LI LY  CG L +AR +FD+M ++D VS+NS+I GY +    +    LF 
Sbjct: 118 LLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFK 177

Query: 210 SM--------PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
            M         +    ++S  + L  Y+     +++   I +   E D+   N+++    
Sbjct: 178 LMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRY---IEDYCIEVDVYLGNTLVDYFG 234

Query: 262 KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
           + G++  A+ +F  M  R++V+   MI  YAK   +  AR++FD++PK+D+++ ++M+ G
Sbjct: 235 RRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISG 294

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
           Y +  +   ALEIF  MQ    + PD   +  V+S+ A LG +D G  +H Y+ ++    
Sbjct: 295 YSQANHFSDALEIFRQMQ-RAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKA 353

Query: 382 NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEME 441
           +     +LIDMY KCGS + A++VF+++++     WN++I GLA +G  + + +L   M 
Sbjct: 354 DTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAML 413

Query: 442 RLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHI 501
                P+ +TF G+L ACA+A LV+EGL  FE M+R++ LEP+++HYGC+VD+LGRAG +
Sbjct: 414 TEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQL 473

Query: 502 EAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF 561
           E A   I +MP++P+ V+WR LL +C  + ++ + E V K L  ++ SNS +Y LLSN +
Sbjct: 474 EKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAY 533

Query: 562 AGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           A    W++A  VR  M + +++K PGCS +E
Sbjct: 534 ASAHRWSEAMNVRQCMADTDVRKSPGCSAVE 564


>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
 gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
 gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
 gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 545

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 198/574 (34%), Positives = 306/574 (53%), Gaps = 75/574 (13%)

Query: 11  CNSTQSTLL-LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFAR 69
           C+ST   +L    + K+L ++ Q HA M+ TG   +T   +KLVA  +++P      +A 
Sbjct: 35  CSSTPVPILSFTERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAH 94

Query: 70  YIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKAC 129
            I  +  +     + F  N++I+ Y++   P+ AL +F  ML   V  DK+S + VLKAC
Sbjct: 95  SILNRIGS----PNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKAC 150

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
           +     EEG QIHGL  K    +D+F++                               N
Sbjct: 151 AAFCGFEEGRQIHGLFIKSGLVTDVFVE-------------------------------N 179

Query: 190 SMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERD 249
           ++++ Y +SG  E AR++ D                                  +MP RD
Sbjct: 180 TLVNVYGRSGYFEIARKVLD----------------------------------RMPVRD 205

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
            +SWNS+L   ++ G +D+A+ALFD+M +R+V SW  MI GYA  G V  A+ +FD MP 
Sbjct: 206 AVSWNSLLSAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPV 265

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           RDVV+ NAM+  Y   G   + LE+F+ M  +    PD  +LV VLSA A LG + +G  
Sbjct: 266 RDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEW 325

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
           +H Y++K    + G    AL+DMYSKCG I+ A++VF       V  WN++I+ L++HGL
Sbjct: 326 VHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGL 385

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
           G+ A ++  EM     +P+ ITF G+L+AC H G++ +    FE+M  ++++EP ++HYG
Sbjct: 386 GKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYG 445

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549
           CMVD+LGR G IE A  L+ ++P +   ++  +LL AC+ +  L   E +A  L+ ++  
Sbjct: 446 CMVDLLGRMGKIEEAEELVNEIPADEASILLESLLGACKRFGQLEQAERIANRLLELNLR 505

Query: 550 NSSSYVLLSNMFAGLGMWN---DARRVRSMMKER 580
           +SS Y  +SN++A  G W    D R  R+M  ER
Sbjct: 506 DSSGYAQMSNLYASDGRWEKVIDGR--RNMRAER 537


>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 196/517 (37%), Positives = 298/517 (57%), Gaps = 43/517 (8%)

Query: 141 IHG-LLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           IH  LL + +  S  F+ N L+ LY R G  ++A ++FD++   ++  + S+I GYV++ 
Sbjct: 21  IHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENR 80

Query: 200 NIESARELFDSM---PIR----------------------------------ERNLISWN 222
             + A  LF  M   PI                                   E++++SWN
Sbjct: 81  QYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFAFDEMCEKDIVSWN 140

Query: 223 SVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV 282
            +++GY      +  A + F++MPER+++SW SM+ G VK G M +AQ LFD MP +D+ 
Sbjct: 141 MMISGYGN-NDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLA 199

Query: 283 SWANMIDGYAKLG-RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
           SW  M+ GY  +G   + AR LFD+MP +++V  + M+GGY RNG  +KALE+F+  + E
Sbjct: 200 SWNVMVSGYMDIGDYTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFK-E 258

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAI-HRYLEKDQFSLNGKHGVALIDMYSKCGSIE 400
             + PD+  ++ ++SA +QLG ID   +I H Y+     S + +   +LIDMY+KCGSIE
Sbjct: 259 QDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLS-DLRVFTSLIDMYAKCGSIE 317

Query: 401 NAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460
            A+++FE      +  ++ MI  LA HGLG  A  L  +M+R +I+PD +TF G+L AC 
Sbjct: 318 KALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACN 377

Query: 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIW 520
           H GLV EG   F+ M     ++P  +HY C+VD+LGR G +E A NLI +MP+ P+ V+W
Sbjct: 378 HGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVW 437

Query: 521 RTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580
             LL+ACR + N+ + E  A  L  ++  NS +Y+LLSN++A  G W    +VR+ ++E 
Sbjct: 438 GALLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREH 497

Query: 581 NLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
            ++K  G SWIEL  VVHEF + D S      I  +L
Sbjct: 498 RVRKNRGSSWIELSHVVHEFVMGDMSHTDSDSISLIL 534



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 133/495 (26%), Positives = 233/495 (47%), Gaps = 67/495 (13%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLT-TKLVASFSSSPCTPLTEFARYIFFKYH 76
           L ++  CKTL  +  IHAR++    + ++     KL+  +S    T          + + 
Sbjct: 6   LHIIHNCKTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATD---------YAHK 56

Query: 77  AFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
            F E   P  +LW ++I  Y       EA  +F  M    +SV  F+ S VLKA +RL  
Sbjct: 57  VFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTR 116

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
            + G  ++G         D+   N +IS Y     ++ AR+ FD+M  R+ VS+ SMI G
Sbjct: 117 FKGGQAVYGFAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICG 176

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN 254
           YVK+G++  A+ LFDSMP+++  L SWN +++GY  +      A  +F++MP ++L++W+
Sbjct: 177 YVKAGDMAEAQVLFDSMPVKD--LASWNVMVSGYMDIGDYTNGARCLFDQMPMKNLVTWS 234

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKRDVVS------------------------------- 283
           +M+ G  + G+   A  LF++  ++D+                                 
Sbjct: 235 TMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGP 294

Query: 284 --------WANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
                   + ++ID YAK G ++ A ++F+    +D++  + M+     +G    A+ +F
Sbjct: 295 SLLSDLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLF 354

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK--DQFSL--NGKHGVALID 391
           D MQ    + PD  + + VL+A    G +D+G    +Y ++  ++F +  + KH   ++D
Sbjct: 355 DKMQ-RANIKPDSVTFLGVLTACNHGGLVDEG---RKYFKQMTEEFGIQPSEKHYACVVD 410

Query: 392 MYSKCGSIENAIKVFEQ--IEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD 449
           +  + G +E A  +     I   SV  W A++    +H   +LA   +   E   IEPD+
Sbjct: 411 LLGRVGCLEEAYNLIRNMPIAPHSVV-WGALLAACRVHCNVQLA--EVAAAELFKIEPDN 467

Query: 450 I-TFTGLLNACAHAG 463
              +  L N  A AG
Sbjct: 468 SGNYILLSNIYAAAG 482


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 204/592 (34%), Positives = 329/592 (55%), Gaps = 49/592 (8%)

Query: 30  VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNA 89
           + QIHAR++  G   +  L TKL+   +SS    +T FAR +F        +   F WNA
Sbjct: 37  LKQIHARLLVLGLQFSGFLITKLI--HASSSFGDIT-FARQVFDDL----PRPQIFPWNA 89

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA 149
           II+ YS     ++AL+M+  M    VS D F+   +LKACS L  ++ G  +H  + ++ 
Sbjct: 90  IIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLG 149

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD 209
           F +D+F+QN LI+LY +C  L                                SAR +F+
Sbjct: 150 FDADVFVQNGLIALYAKCRRLG-------------------------------SARTVFE 178

Query: 210 SMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----ISWNSMLHGCVKCGK 265
            +P+ ER ++SW ++++ YAQ    ++ A +IF  M + D+    ++  S+L+       
Sbjct: 179 GLPLPERTIVSWTAIVSAYAQNGEPME-ALEIFSHMRKMDVKPDWVALVSVLNAFTCLQD 237

Query: 266 MDDAQALFDKMPKRDVVSWANMIDG----YAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
           +   +++   + K  +    +++      YAK G+V  A+ LFD+M   +++  NAM+ G
Sbjct: 238 LKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISG 297

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
           Y +NGY+ +A+++F  M     + PD  S+   +SA AQ+G +++  +++ Y+ +  +  
Sbjct: 298 YAKNGYAREAIDMFHEM-INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRD 356

Query: 382 NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEME 441
           +     ALIDM++KCGS+E A  VF++  D  V  W+AMI G  +HG    A  L   ME
Sbjct: 357 DVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAME 416

Query: 442 RLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHI 501
           R  + P+D+TF GLL AC H+G+V+EG   F LM   HK+ P+ QHY C++D+LGRAGH+
Sbjct: 417 RGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMAD-HKINPQQQHYACVIDLLGRAGHL 475

Query: 502 EAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF 561
           + A  +I+ MP++P   +W  LLSAC+ + ++ +GE  A+ L  +D SN+  YV LSN++
Sbjct: 476 DQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLY 535

Query: 562 AGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
           A   +W+    VR  MKE+ L K  GCSW+E+ G +  F V DKS  +  +I
Sbjct: 536 AAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEI 587


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 207/613 (33%), Positives = 333/613 (54%), Gaps = 33/613 (5%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           +HA +  +GF  N  +   LV+ +    C    E AR +F +    R   D   WN+I+ 
Sbjct: 167 VHAVVFASGFEWNVFVGNGLVSMYGR--CGAW-ENARQVFDEMRE-RGVGDLVSWNSIVA 222

Query: 93  TYSHGLDPKEALVMFCLMLDN-GVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
            Y  G D   A+ MF  M ++ G+  D  S   VL AC+ +G    G Q+HG   +    
Sbjct: 223 AYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLF 282

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
            D+F+ N ++ +Y +CG +E A ++F++M ++D VS+N+M+ GY + G  + A  LF+  
Sbjct: 283 EDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEK- 341

Query: 212 PIRER----NLISWNSVLNGYAQLKSGLQFAWQIFEKM----PERDLISWNSMLHGCVKC 263
            IRE     N+++W++V+ GYAQ   G + A  +F +M     E ++++  S+L GC   
Sbjct: 342 -IREEKIELNVVTWSAVIAGYAQRGLGFE-ALDVFRQMLLCGSEPNVVTLVSLLSGCASA 399

Query: 264 GKMDDAQA-----------LFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD- 311
           G +   +            L +  P  D++    +ID Y+K      AR +FD +P +D 
Sbjct: 400 GTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDR 459

Query: 312 -VVACNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
            VV    ++GG  ++G + +ALE+F  M Q + ++ P+  ++   L A A+LG +  G  
Sbjct: 460 SVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQ 519

Query: 370 IHRYLEKDQFSLNGKHGVA--LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
           IH Y+ +++F  +    VA  LIDMYSK G ++ A  VF+ +   +   W +++ G  +H
Sbjct: 520 IHAYVLRNRFE-SAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMH 578

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           G GE A  +  EM+++ + PD +TF  +L AC+H+G+V +G+  F  M +   + P  +H
Sbjct: 579 GRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEH 638

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
           Y CMVD+L RAG ++ A  LI  MPM+P   +W  LLSACR Y N+ +GE  A  L+ ++
Sbjct: 639 YACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELE 698

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
           S N  SY LLSN++A    W D  R+R +MK   +KK PGCSW++       FF  D S 
Sbjct: 699 SGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSH 758

Query: 608 LQVRDIYYMLDNM 620
              + IY +L ++
Sbjct: 759 PMSQQIYDLLRDL 771



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 154/545 (28%), Positives = 265/545 (48%), Gaps = 36/545 (6%)

Query: 7   YNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTE 66
           ++   ++T  T  L  +CK+L      H +++  G   +      +  +F+S P   L+ 
Sbjct: 41  FSTASSTTDLTSTLFHQCKSLASAELTHQQLLVQGLPHDPTHIISMYLTFNS-PAKALS- 98

Query: 67  FARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVL 126
               +  + H        F WN +I+   H    ++ L ++  M   G   D ++   VL
Sbjct: 99  ----VLRRLHP--SSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVL 152

Query: 127 KACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM---GIR 183
           KAC  +     G  +H ++    F  ++F+ N L+S+Y RCG  E ARQ+FD+M   G+ 
Sbjct: 153 KACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVG 212

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMP----IRERNLISWNSVLNGYAQLKS---GLQ 236
           D VS+NS++  Y++ G+   A ++F+ M     IR  + +S  +VL   A + +   G Q
Sbjct: 213 DLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRP-DAVSLVNVLPACASVGAWSRGKQ 271

Query: 237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR 296
                       D+   N+++    KCG M++A  +F++M  +DVVSW  M+ GY+++GR
Sbjct: 272 VHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGR 331

Query: 297 VDIARRLFDEMPKR----DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLV 352
            D A  LF+++ +     +VV  +A++ GY + G   +AL++F  M       P+  +LV
Sbjct: 332 FDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLL-CGSEPNVVTLV 390

Query: 353 IVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV-------ALIDMYSKCGSIENAIKV 405
            +LS  A  G +  G   H +  K   +L+            ALIDMYSKC S + A  +
Sbjct: 391 SLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAM 450

Query: 406 FEQI--EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS--IEPDDITFTGLLNACAH 461
           F+ I  +D SV  W  +I G A HG    A +L  +M +    + P+  T +  L ACA 
Sbjct: 451 FDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACAR 510

Query: 462 AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWR 521
            G ++ G      + R       L    C++D+  ++G ++AAR + ++M  + N V W 
Sbjct: 511 LGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNM-HQRNGVSWT 569

Query: 522 TLLSA 526
           +L++ 
Sbjct: 570 SLMTG 574


>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
          Length = 851

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 205/586 (34%), Positives = 325/586 (55%), Gaps = 33/586 (5%)

Query: 29  DVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI--FFKYH----AFR--- 79
           D N   AR+  TG ++         A+F + P      +   +  +F+ H    A R   
Sbjct: 19  DANARIARLARTGNMEGAR------ATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFH 72

Query: 80  --EKKDPFLWNAIIKTYS---HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
               +D   +NA+I   S   H L P  A  +  +     V     S + +L+   R GL
Sbjct: 73  RMPTRDLASYNALISGLSLRRHTL-PDAAAALATIPYPPSV----VSFTSLLRGYVRHGL 127

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           + + +Q   L R++   + +     L+  ++  G ++ AR+LFD+M  +D V++ +M+ G
Sbjct: 128 LADAIQ---LFRQMPERNHISY-TVLLGGFLDAGRVDEARKLFDEMPAKDVVAWTAMLSG 183

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN 254
           Y + G ++ AR LFD MP  +RN++SW ++++GYAQ    +  A ++FE MPER+ +SW 
Sbjct: 184 YCQVGRVDEARTLFDEMP--KRNVVSWTAMVSGYAQ-NGQVNLARKLFEVMPERNEVSWT 240

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
           +ML G ++ G+++DA+ LF+ MP   + +   MI G+ + G VD A+ +FD M +RD   
Sbjct: 241 AMLFGYIQAGRIEDAEELFNAMPDHPLAACNGMIVGFGQQGMVDAAKSVFDRMCERDDGT 300

Query: 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
            +A++  Y +N + M+AL  F  M   + + P+  S++ +L+  A L  +D G  +H  +
Sbjct: 301 WSAIIKAYEQNEFLMEALSTFREM-LHIGIRPNYPSVISILTVCAALAVLDYGREVHGAM 359

Query: 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
            +  F ++     ALI MY KCG+++ A +VF   E   V  WN+MI G A HGLGE A 
Sbjct: 360 LRRSFDMDIYAVSALITMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITGYAQHGLGEEAL 419

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
            +  +M    + PD IT+ G L AC++ G VKEG   F  MR    ++P L+HY CMVD+
Sbjct: 420 HIFDDMRLAGMVPDGITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKPGLEHYACMVDL 479

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           LGRAG ++ A  LI+ MP+EP+ VIW  L+ ACR ++N  + E  AK L+ ++  N+  Y
Sbjct: 480 LGRAGLVDEALYLIKTMPVEPDAVIWGALMGACRMHKNAEIAEISAKKLLELEPGNAGPY 539

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
           VLLS+++   G W DA  +R  +  R+L K  GCSWIE +  VH F
Sbjct: 540 VLLSHIYTSSGRWEDASNMRKFISSRHLNKSLGCSWIEYDKRVHLF 585



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 157/328 (47%), Gaps = 53/328 (16%)

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEK 244
           V  N+ I    ++GN+E AR  F++MP+  R   S+N++L GY   ++ L   A ++F +
Sbjct: 18  VDANARIARLARTGNMEGARATFEAMPL--RTTASYNALLAGY--FRNHLPDAALRVFHR 73

Query: 245 MPERDLISWN---------------------------------SMLHGCVKCGKMDDAQA 271
           MP RDL S+N                                 S+L G V+ G + DA  
Sbjct: 74  MPTRDLASYNALISGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGLLADAIQ 133

Query: 272 LFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKA 331
           LF +MP+R+ +S+  ++ G+   GRVD AR+LFDEMP +DVVA  AM+ GY + G   +A
Sbjct: 134 LFRQMPERNHISYTVLLGGFLDAGRVDEARKLFDEMPAKDVVAWTAMLSGYCQVGRVDEA 193

Query: 332 LEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL-EKDQFSLNGKHGVALI 390
             +FD M        +  S   ++S  AQ G ++    +   + E+++ S       A++
Sbjct: 194 RTLFDEMPKR-----NVVSWTAMVSGYAQNGQVNLARKLFEVMPERNEVSWT-----AML 243

Query: 391 DMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
             Y + G IE+A ++F  + D  +   N MI G    G+ + A  +   M     E DD 
Sbjct: 244 FGYIQAGRIEDAEELFNAMPDHPLAACNGMIVGFGQQGMVDAAKSVFDRM----CERDDG 299

Query: 451 TFTGLLNACAHAGLVKEGLLCFELMRRI 478
           T++ ++ A      + E L  F  M  I
Sbjct: 300 TWSAIIKAYEQNEFLMEALSTFREMLHI 327



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 155/369 (42%), Gaps = 57/369 (15%)

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
           ++  N+ +    + G M+ A+A F+ MP R   S+  ++ GY +    D A R+F  MP 
Sbjct: 17  VVDANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRMPT 76

Query: 310 RDVVACNAMMG---------------------------------GYVRNGYSMKALEIFD 336
           RD+ + NA++                                  GYVR+G    A+++F 
Sbjct: 77  RDLASYNALISGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGLLADAIQLFR 136

Query: 337 NMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC 396
            M    ++     S  ++L      G +D+     R L  +  + +     A++  Y + 
Sbjct: 137 QMPERNHI-----SYTVLLGGFLDAGRVDEA----RKLFDEMPAKDVVAWTAMLSGYCQV 187

Query: 397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLL 456
           G ++ A  +F+++   +V  W AM++G A +G   LA  L   M     E +++++T +L
Sbjct: 188 GRVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVMP----ERNEVSWTAML 243

Query: 457 NACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC--MVDILGRAGHIEAARNLIEDMPME 514
                AG +++    F  M       P+     C  M+   G+ G ++AA+++ + M  E
Sbjct: 244 FGYIQAGRIEDAEELFNAM-------PDHPLAACNGMIVGFGQQGMVDAAKSVFDRM-CE 295

Query: 515 PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD-SSNSSSYVLLSNMFAGLGMWNDARRV 573
            +D  W  ++ A    E L       + ++ +    N  S + +  + A L + +  R V
Sbjct: 296 RDDGTWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREV 355

Query: 574 RSMMKERNL 582
              M  R+ 
Sbjct: 356 HGAMLRRSF 364



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 15/207 (7%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           S  S L +      L+   ++H  M+   F  + +  + L+  +    C  L +  R   
Sbjct: 335 SVISILTVCAALAVLDYGREVHGAMLRRSFDMDIYAVSALITMYIK--CGNLDKAKRV-- 390

Query: 73  FKYHAFREKKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
             +H F E KD  +WN++I  Y+ HGL  +EAL +F  M   G+  D  +    L ACS 
Sbjct: 391 --FHMF-EPKDVVMWNSMITGYAQHGLG-EEALHIFDDMRLAGMVPDGITYIGALTACSY 446

Query: 132 LGLIEEGLQIHGLLR-KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYN 189
            G ++EG  I   +R K      L    C++ L  R G ++ A  L   M +  D+V + 
Sbjct: 447 TGKVKEGRDIFNSMRTKSGIKPGLEHYACMVDLLGRAGLVDEALYLIKTMPVEPDAVIWG 506

Query: 190 SMIDGYVKSGNIE----SARELFDSMP 212
           +++       N E    SA++L +  P
Sbjct: 507 ALMGACRMHKNAEIAEISAKKLLELEP 533


>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
 gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
 gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 555

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 184/543 (33%), Positives = 308/543 (56%), Gaps = 38/543 (6%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFC-LMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
           ++ D FL N++IK Y       ++  ++  L  +   + D F+ + + K+CS    + +G
Sbjct: 38  QRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQG 97

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
           LQ+H  + +  F +D+++   ++ +Y +          F KMG                 
Sbjct: 98  LQLHSQIWRFGFCADMYVSTGVVDMYAK----------FGKMG----------------- 130

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE-RDLISWNSML 257
                AR  FD MP   R+ +SW ++++GY +    L  A ++F++MP  +D++ +N+M+
Sbjct: 131 ----CARNAFDEMP--HRSEVSWTALISGYIRCGE-LDLASKLFDQMPHVKDVVIYNAMM 183

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNA 317
            G VK G M  A+ LFD+M  + V++W  MI GY  +  +D AR+LFD MP+R++V+ N 
Sbjct: 184 DGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNT 243

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           M+GGY +N    + + +F  MQ    L PDD +++ VL AI+  G +  G   H ++++ 
Sbjct: 244 MIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRK 303

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLL 437
           +     K   A++DMYSKCG IE A ++F+++ +  V  WNAMI+G A++G    A DL 
Sbjct: 304 KLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLF 363

Query: 438 MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
           + M  +  +PD+IT   ++ AC H GLV+EG   F +MR +  L  +++HYGCMVD+LGR
Sbjct: 364 VTM-MIEEKPDEITMLAVITACNHGGLVEEGRKWFHVMREM-GLNAKIEHYGCMVDLLGR 421

Query: 498 AGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557
           AG ++ A +LI +MP EPN +I  + LSAC  Y+++   E + K  + ++  N  +YVLL
Sbjct: 422 AGSLKEAEDLITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLL 481

Query: 558 SNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
            N++A    W+D   V+++M++   KK  GCS IE+  +V EF   D +    R I+ +L
Sbjct: 482 RNLYAADKRWDDFGMVKNVMRKNQAKKEVGCSLIEINYIVSEFISGDTTHPHRRSIHLVL 541

Query: 618 DNM 620
            ++
Sbjct: 542 GDL 544



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 110/242 (45%), Gaps = 21/242 (8%)

Query: 297 VDIARRLFDEMPKR-DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
           +  AR+LFD+ P+R D    N+M+  Y+       +  ++ +++ E    PD+ +   + 
Sbjct: 26  IGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLT 85

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
            + +    + +G+ +H  + +  F  +      ++DMY+K G +  A   F+++   S  
Sbjct: 86  KSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEV 145

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            W A+I+G    G  +LA  L  +M  +    D + +  +++     G VK G      M
Sbjct: 146 SWTALISGYIRCGELDLASKLFDQMPHVK---DVVIYNAMMD-----GFVKSG-----DM 192

Query: 476 RRIHKLEPELQH-----YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA-CRN 529
               +L  E+ H     +  M+        I+AAR L + MP E N V W T++   C+N
Sbjct: 193 TSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMP-ERNLVSWNTMIGGYCQN 251

Query: 530 YE 531
            +
Sbjct: 252 KQ 253


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 197/579 (34%), Positives = 318/579 (54%), Gaps = 80/579 (13%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           + +  +WN + + ++   DP  AL ++ +M+  G+  + F+   +LK+C++    +EG Q
Sbjct: 37  EPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKTFKEGQQ 96

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           IHG + K+ F  DL++   LIS+Y +                               +G 
Sbjct: 97  IHGHVLKLGFDLDLYVHTSLISMYAQ-------------------------------NGR 125

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
           +E A+++FD      R+++S+ +++ GYA  +  ++ A ++F+++P +D++SWN+M+ G 
Sbjct: 126 LEDAQKVFDRS--SHRDVVSYTALITGYAS-RGYIESAQKMFDEIPIKDVVSWNAMISGY 182

Query: 261 VKCGKMDDAQALFDKMPK--------------------------RDVVSWAN-------- 286
            + G    A  LF +M K                          R V SW N        
Sbjct: 183 AETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNL 242

Query: 287 -----MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
                +ID Y+K G V+ A  L + +  +DV++ N ++GGY       +AL +F  M   
Sbjct: 243 KIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEM-LR 301

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG----VALIDMYSKCG 397
               P+D +++ +L A A LG ID G  IH Y++K    +   +      +LIDMY+KCG
Sbjct: 302 SGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCG 361

Query: 398 SIENAIKVFEQIE-DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLL 456
            I+ A +V +    + S+  WNAMI G A+HG    AFD+   M +  IEPDDITF GLL
Sbjct: 362 DIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLL 421

Query: 457 NACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPN 516
           +AC+H+G++  G   F  MR+ + + P+L+HYGCM+D+LG +G  + A  +I  MPMEP+
Sbjct: 422 SACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPD 481

Query: 517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSM 576
            VIW +LL AC+ + NL +GE  AK LI ++  N  SYVLLSN++A  G WN+  ++R++
Sbjct: 482 GVIWCSLLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTL 541

Query: 577 MKERNL-KKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           + ++ + KK+PGCS IE++ VVHEF + DK   Q R+IY
Sbjct: 542 LNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIY 580



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 143/536 (26%), Positives = 236/536 (44%), Gaps = 107/536 (19%)

Query: 19  LLLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSS----------------- 58
            LL+ C   KT  +  QIH  ++  GF  + ++ T L++ ++                  
Sbjct: 80  FLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHR 139

Query: 59  ---SPCTPLTEFAR--YIFFKYHAFRE--KKDPFLWNAIIKTYSHGLDPKEALVMFCLML 111
              S    +T +A   YI      F E   KD   WNA+I  Y+   + K+AL +F  M+
Sbjct: 140 DVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMM 199

Query: 112 DNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLE 171
              V  D+ + + V+ AC++ G IE G Q+H  +    FGS+L + N LI LY +CG +E
Sbjct: 200 KTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVE 259

Query: 172 FARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQL 231
            A +L + +  +D +S+N++I GY      + A  LF  M                   L
Sbjct: 260 TACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEM-------------------L 300

Query: 232 KSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQ---ALFDKMPKRDVVSWA--- 285
           +SG         + P    ++  S+L  C   G +D  +      DK  K  VV+ A   
Sbjct: 301 RSG---------ETPND--VTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSL 349

Query: 286 --NMIDGYAKLGRVDIARRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
             ++ID YAK G +D A ++ D     R +   NAM+ G+  +G +  A +IF  M+ + 
Sbjct: 350 RTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMR-KN 408

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENA 402
            + PDD + V +LSA +  G +D G  I R + +D +++  K                  
Sbjct: 409 GIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQD-YNITPK------------------ 449

Query: 403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
                      ++H+  MI+ L   GL + A +++  M    +EPD + +  LL AC   
Sbjct: 450 -----------LEHYGCMIDLLGHSGLFKEAEEMINTM---PMEPDGVIWCSLLKACKIH 495

Query: 463 GLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAG---HIEAARNLIEDMPME 514
           G ++ G       +++ K+EPE    Y  + +I   AG    +   R L+ D  M+
Sbjct: 496 GNLELGE---SFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMK 548



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 173/425 (40%), Gaps = 123/425 (28%)

Query: 234 GLQFAWQIFEKMPERDLISWNSMLHG---------------------------------- 259
           GL +A  +FE +PE + + WN M  G                                  
Sbjct: 24  GLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLK 83

Query: 260 -CVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGR------------------ 296
            C K     + Q +   + K     D+    ++I  YA+ GR                  
Sbjct: 84  SCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVS 143

Query: 297 -------------VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELY 343
                        ++ A+++FDE+P +DVV+ NAM+ GY   G   KALE+F  M  +  
Sbjct: 144 YTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMM-KTN 202

Query: 344 LHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAI 403
           + PD++++  V+SA AQ G I+ G  +H ++    F  N K   ALID+YSKCG +E A 
Sbjct: 203 VKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETAC 262

Query: 404 KVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAG 463
           ++ E + +  V  WN +I G     L + A  L  EM R    P+D+T   +L ACAH G
Sbjct: 263 ELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLG 322

Query: 464 LVKEGLLCFELMRRIH-KLEPELQHY---------GCMVDILGRAGHIEAARNLIEDMP- 512
            +  G       R IH  ++ +L+             ++D+  + G I+AA  + +    
Sbjct: 323 AIDIG-------RWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAF 375

Query: 513 ----------------------------------MEPNDVIWRTLLSACRNYENLNVGEP 538
                                             +EP+D+ +  LLSAC +   L++G  
Sbjct: 376 NRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRN 435

Query: 539 VAKHL 543
           + + +
Sbjct: 436 IFRSM 440


>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 198/554 (35%), Positives = 312/554 (56%), Gaps = 23/554 (4%)

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
           ++ F    + +++N +I  +      ++A  ++  ML NG   D+ +   +L+       
Sbjct: 23  FNHFTPYPNLYIFNTMILGFP--FSNEKAFTIYRSMLQNGTYPDRQTFLYLLQTTK---F 77

Query: 135 IEEGLQIH------GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY 188
           + E  QIH      GLL K     + +L+N LI  YV  G  E ARQLFD+M  R+ VSY
Sbjct: 78  VAEVKQIHCHALVFGLLSK-----EEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSY 132

Query: 189 NSMIDGYVKSGNIESARELFDSMPIR-----ERNLISWNSVLNGYAQLKSGLQFAWQIFE 243
           N+MI G+ K GNI    ELF  M        +  ++    +     + K G     QI +
Sbjct: 133 NTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEK 192

Query: 244 KMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRL 303
            +   +LI +N++L   VKC ++  A+ +FD   ++D VSW  +I GYAK+G +++A  L
Sbjct: 193 SIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDL 252

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           F+++P RD+V+ N+++ GY +NG  +    +F  M  E  + PD  ++V ++SA+A++G 
Sbjct: 253 FNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAE-NVKPDKVTIVNLISAVAEMGA 311

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           +D+G  IH    K    +    G ALIDMY KCGSIE A  +F QI +  V  W  MI G
Sbjct: 312 LDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITG 371

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
            A HG G  A +L   M+    +P+D+TF  +L AC+H+GLV EGL  F  M++ + +EP
Sbjct: 372 FAFHGFGNKALELFSVMQA-ETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEP 430

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
            ++HYGC+VD+L R+G +  A  +IE MPMEP+  IW  +LSACR + N+ + E     L
Sbjct: 431 GVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMEL 490

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVR 603
           + ++      Y+LLSN++A  G W+ +  +R +M  R +KK+ GCS + ++G+VH+F   
Sbjct: 491 LKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVDGMVHDFTAS 550

Query: 604 DKSRLQVRDIYYML 617
           +K   +  DI  +L
Sbjct: 551 NKQHPRWMDICSIL 564


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 207/613 (33%), Positives = 333/613 (54%), Gaps = 33/613 (5%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           +HA +  +GF  N  +   LV+ +    C    E AR +F +    R   D   WN+I+ 
Sbjct: 148 VHAVVFASGFEWNVFVGNGLVSMYGR--CGAW-ENARQVFDEMRE-RGVGDLVSWNSIVA 203

Query: 93  TYSHGLDPKEALVMFCLMLDN-GVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
            Y  G D   A+ MF  M ++ G+  D  S   VL AC+ +G    G Q+HG   +    
Sbjct: 204 AYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLF 263

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
            D+F+ N ++ +Y +CG +E A ++F++M ++D VS+N+M+ GY + G  + A  LF+  
Sbjct: 264 EDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEK- 322

Query: 212 PIRER----NLISWNSVLNGYAQLKSGLQFAWQIFEKM----PERDLISWNSMLHGCVKC 263
            IRE     N+++W++V+ GYAQ   G + A  +F +M     E ++++  S+L GC   
Sbjct: 323 -IREEKIELNVVTWSAVIAGYAQRGLGFE-ALDVFRQMRLCGSEPNVVTLVSLLSGCALA 380

Query: 264 GKMDDAQA-----------LFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD- 311
           G +   +            L +  P  D++    +ID Y+K      AR +FD +P +D 
Sbjct: 381 GTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDR 440

Query: 312 -VVACNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
            VV    ++GG  ++G + +ALE+F  M Q + ++ P+  ++   L A A+LG +  G  
Sbjct: 441 SVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQ 500

Query: 370 IHRYLEKDQFSLNGKHGVA--LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
           IH Y+ +++F  +    VA  LIDMYSK G ++ A  VF+ +   +   W +++ G  +H
Sbjct: 501 IHAYVLRNRFE-SAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMH 559

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           G GE A  +  EM+++ + PD +TF  +L AC+H+G+V +G+  F  M +   + P  +H
Sbjct: 560 GRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEH 619

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
           Y CMVD+L RAG ++ A  LI  MPM+P   +W  LLSACR Y N+ +GE  A  L+ ++
Sbjct: 620 YACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELE 679

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
           S N  SY LLSN++A    W D  R+R +MK   +KK PGCSW++       FF  D S 
Sbjct: 680 SGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSH 739

Query: 608 LQVRDIYYMLDNM 620
              + IY +L ++
Sbjct: 740 PMSQQIYDLLRDL 752



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 155/545 (28%), Positives = 267/545 (48%), Gaps = 36/545 (6%)

Query: 7   YNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTE 66
           ++   ++T  T  L  +CK+L     IH +++  G   +      +  +F+S P   L+ 
Sbjct: 22  FSTASSTTDLTSTLFHQCKSLASAELIHQQLLVQGLPHDPTHIISMYLTFNS-PAKALS- 79

Query: 67  FARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVL 126
               +  + H        F WN +I+   H    ++ L ++  M   G   D ++   VL
Sbjct: 80  ----VLRRLHP--SSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVL 133

Query: 127 KACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM---GIR 183
           KAC  +     G  +H ++    F  ++F+ N L+S+Y RCG  E ARQ+FD+M   G+ 
Sbjct: 134 KACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVG 193

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMP----IRERNLISWNSVLNGYAQLKS---GLQ 236
           D VS+NS++  Y++ G+   A ++F+ M     IR  + +S  +VL   A + +   G Q
Sbjct: 194 DLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRP-DAVSLVNVLPACASVGAWSRGKQ 252

Query: 237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR 296
                       D+   N+++    KCG M++A  +F++M  +DVVSW  M+ GY+++GR
Sbjct: 253 VHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGR 312

Query: 297 VDIARRLFDEMPKR----DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLV 352
            D A  LF+++ +     +VV  +A++ GY + G   +AL++F  M+      P+  +LV
Sbjct: 313 FDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRL-CGSEPNVVTLV 371

Query: 353 IVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV-------ALIDMYSKCGSIENAIKV 405
            +LS  A  G +  G   H +  K   +L+            ALIDMYSKC S + A  +
Sbjct: 372 SLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAM 431

Query: 406 FEQI--EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS--IEPDDITFTGLLNACAH 461
           F+ I  +D SV  W  +I G A HG    A +L  +M +    + P+  T +  L ACA 
Sbjct: 432 FDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACAR 491

Query: 462 AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWR 521
            G ++ G      + R       L    C++D+  ++G ++AAR + ++M  + N V W 
Sbjct: 492 LGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNM-HQRNGVSWT 550

Query: 522 TLLSA 526
           +L++ 
Sbjct: 551 SLMTG 555


>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 555

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 184/543 (33%), Positives = 308/543 (56%), Gaps = 38/543 (6%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFC-LMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
           ++ D FL N++IK Y       ++  ++  L  +   + D F+ + + K+CS    + +G
Sbjct: 38  QRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQG 97

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
           LQ+H  + +  F +D+++   ++ +Y +          F KMG                 
Sbjct: 98  LQLHSQIWRFGFCADMYVSTGVVDMYAK----------FGKMG----------------- 130

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE-RDLISWNSML 257
                AR  FD MP   R+ +SW ++++GY +    L  A ++F++MP  +D++ +N+M+
Sbjct: 131 ----CARNAFDEMP--HRSEVSWTALISGYIRCGE-LDLASKLFDQMPHVKDVVIYNAMM 183

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNA 317
            G VK G M  A+ LFD+M  + V++W  MI GY  +  +D AR+LFD MP+R++V+ N 
Sbjct: 184 DGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNT 243

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           M+GGY +N    + + +F  MQ    L PDD +++ VL AI+  G +  G   H ++++ 
Sbjct: 244 MIGGYCQNKQPQEGITLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRK 303

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLL 437
           +     K   A++DMYSKCG IE A ++F+++ +  V  WNAMI+G A++G    A DL 
Sbjct: 304 KLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLF 363

Query: 438 MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
           + M  +  +PD+IT   ++ AC H GLV+EG   F +MR +  L  +++HYGCMVD+LGR
Sbjct: 364 VTM-MIEEKPDEITMLAVITACNHGGLVEEGRKWFHVMREM-GLNAKIEHYGCMVDLLGR 421

Query: 498 AGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557
           AG ++ A +LI +MP EPN +I  + LSAC  Y+++   E + K  + ++  N  +YVLL
Sbjct: 422 AGSLKEAEDLITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLL 481

Query: 558 SNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
            N++A    W+D   V+++M++   KK  GCS IE+  +V EF   D +    R I+ +L
Sbjct: 482 RNLYAADKRWDDFGMVKNVMRKNQAKKEVGCSLIEINYIVSEFISGDTTHPHRRSIHLVL 541

Query: 618 DNM 620
            ++
Sbjct: 542 GDL 544



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 110/242 (45%), Gaps = 21/242 (8%)

Query: 297 VDIARRLFDEMPKR-DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
           +  AR+LFD+ P+R D    N+M+  Y+       +  ++ +++ E    PD+ +   + 
Sbjct: 26  IGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLT 85

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
            + +    + +G+ +H  + +  F  +      ++DMY+K G +  A   F+++   S  
Sbjct: 86  KSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEV 145

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            W A+I+G    G  +LA  L  +M  +    D + +  +++     G VK G      M
Sbjct: 146 SWTALISGYIRCGELDLASKLFDQMPHVK---DVVIYNAMMD-----GFVKSG-----DM 192

Query: 476 RRIHKLEPELQH-----YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA-CRN 529
               +L  E+ H     +  M+        I+AAR L + MP E N V W T++   C+N
Sbjct: 193 TSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMP-ERNLVSWNTMIGGYCQN 251

Query: 530 YE 531
            +
Sbjct: 252 KQ 253


>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 211/612 (34%), Positives = 325/612 (53%), Gaps = 68/612 (11%)

Query: 37  MITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDP--FLWNAIIKTY 94
           M+ TG + +   +++L+A  + S        +RY+ +     +  ++P  F WN  I+ +
Sbjct: 1   MVITGLVLDPFASSRLIAFCALSE-------SRYLNYCVKILKGIENPNAFSWNVTIRGF 53

Query: 95  SHGLDPKEALVMFCLMLDNGV---SVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
           S   +PK+A++ +  ML  G      D F+  ++ K C+ L L   G  I G + K+   
Sbjct: 54  SESENPKDAVLAYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMILGHVFKLRLE 113

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
               + N  I ++  CG                                +E+AR++FD  
Sbjct: 114 LVSHVHNASIHMFASCG-------------------------------EMENARKVFDES 142

Query: 212 PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER----DLISWNSMLHGCVKCGKMD 267
           P+R+  L+SWN ++NGY ++  G + A ++++ M       D ++   ++  C   G ++
Sbjct: 143 PVRD--LVSWNCLINGYKKIGEG-EKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLN 199

Query: 268 DAQALFDKMPK---RDVVSWAN-MIDGYAKLGRVDIARR-------------LFDEMPKR 310
             +  ++ +     R  +  AN ++D ++K G +  ARR             LFD+M ++
Sbjct: 200 RGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEK 259

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
           DVV  NAM+GG V+   S  AL +F  MQ      PD+ +++  LSA +QLG +D G+ I
Sbjct: 260 DVVMWNAMIGGSVQAKRSQDALALFQEMQTS-NTDPDEITMIHCLSACSQLGALDVGIWI 318

Query: 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
           HRY+EK   SLN   G +L+DMY+KCG+I  A+ VF  I+  +   + A+I GLA+HG  
Sbjct: 319 HRYIEKHSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQTRNSLTYTAIIGGLALHGDA 378

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
             A     EM    I PD+ITF GLL+AC H G+++ G   F  M+    L P+L+HY  
Sbjct: 379 STAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSI 438

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           MVD+LGRAG +E A  L+E MPME +  +W  LL  CR + N+ +GE  AK L+ +D S+
Sbjct: 439 MVDLLGRAGLLEEADKLMESMPMEADAAVWGALLFGCRMHGNVKLGEKAAKKLLELDPSD 498

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQV 610
           S  YVLL  M+    MW DA+R R MM ER ++K+PGCS IE+ G+V EF VRDKSR + 
Sbjct: 499 SGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVSEFIVRDKSRPES 558

Query: 611 RDIYYMLDNMWT 622
             IY  L  + T
Sbjct: 559 EKIYDCLHCLGT 570


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 186/517 (35%), Positives = 296/517 (57%), Gaps = 38/517 (7%)

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           ++ ++ K     D +L N  IS       +++A   + +M I +   YN+MI G+V+S  
Sbjct: 1   MYAVMVKTNTNQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQ 60

Query: 201 IESARELFDSM------------P--IRERNLIS------------WNSVLNGYAQLKSG 234
              A EL+  M            P  I+   L+S            W +  + +  +++ 
Sbjct: 61  PVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTS 120

Query: 235 L----------QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSW 284
           L          + + ++F++MPERD+ +W +M+ G V+ G M  A  LFD MP R++ +W
Sbjct: 121 LVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATW 180

Query: 285 ANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYL 344
             +IDGYA+L  VD+A  LF++MP RD+++   M+  Y +N    +AL +F+ M  +  +
Sbjct: 181 NTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEM-AKHGI 239

Query: 345 HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIK 404
            PD+ ++  V+SA A LG +D G  IH Y+ +  F+L+   G ALIDMY+KCGS++ ++ 
Sbjct: 240 SPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLL 299

Query: 405 VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL 464
           +F ++ + ++  WN++I GLA+HG  E A  +  +MER  I+P+ +TF  +L+AC HAGL
Sbjct: 300 MFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGL 359

Query: 465 VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
           ++EG   F  M R H + P ++HYGCMVD+L +AG +E A  LI  M +EPN VIW  LL
Sbjct: 360 IEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALL 419

Query: 525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL-K 583
           S C+ + NL + +  A  L+ ++  NS  Y LL NM A +  W +A ++R  MKE+ + K
Sbjct: 420 SGCKLHRNLEIAQVAANKLMVLEPGNSGYYTLLVNMNAEVNRWGEAAKIRLTMKEQGVEK 479

Query: 584 KLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           + PG SWIE+E  VH+F   DKS     +IY +L  +
Sbjct: 480 RCPGSSWIEMESQVHQFAASDKSHAASDEIYSLLAEL 516



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/456 (26%), Positives = 232/456 (50%), Gaps = 61/456 (13%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFAR--YIFFKYHAFREKKDPFLWNAI 90
           ++A M+ T   ++ +L  + +++ S+        F R  Y    Y    E  + F++NA+
Sbjct: 1   MYAVMVKTNTNQDCYLMNQFISALST--------FNRMDYAVLAYTQM-EIPNVFVYNAM 51

Query: 91  IKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAF 150
           IK +     P +AL ++  ML   VS   ++   ++KAC  +  +     +HG + +  F
Sbjct: 52  IKGFVQSYQPVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGF 111

Query: 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDS 210
            S +F+Q  L+  Y   G +E + ++FD+M  RD  ++ +M+ G V+ G++ SA  LFD 
Sbjct: 112 DSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDM 171

Query: 211 MPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQ 270
           MP  +RNL +WN++++GYA+L+  +  A  +F +MP RD+ISW +M++   +  +  +A 
Sbjct: 172 MP--DRNLATWNTLIDGYARLRE-VDVAELLFNQMPARDIISWTTMINCYSQNKRFREAL 228

Query: 271 ALFDKMPKR---------------------------------------DVVSWANMIDGY 291
            +F++M K                                        DV   + +ID Y
Sbjct: 229 GVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMY 288

Query: 292 AKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASL 351
           AK G +D +  +F ++ ++++   N+++ G   +GY+ +AL +FD M+ E  + P+  + 
Sbjct: 289 AKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMERE-KIKPNGVTF 347

Query: 352 VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG-KHGVALIDMYSKCGSIENAIKVFE--Q 408
           V VLSA    G I++G      + +D     G +H   ++D+ SK G +E A+++    +
Sbjct: 348 VSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMK 407

Query: 409 IEDGSVDHWNAMINGLAIH---GLGELAFDLLMEME 441
           +E  +V  W A+++G  +H    + ++A + LM +E
Sbjct: 408 LEPNAVI-WGALLSGCKLHRNLEIAQVAANKLMVLE 442


>gi|326530660|dbj|BAK01128.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 613

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 184/468 (39%), Positives = 283/468 (60%), Gaps = 6/468 (1%)

Query: 140 QIHGL-LRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
            +H L +R     +DL L N L++ Y+  G    AR+LF  +   D+V++N+++   ++S
Sbjct: 121 SLHALAVRSGHLPADLRLANSLLARYLAHGSHASARRLFADVPRPDAVTWNTLLRACLRS 180

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLH 258
           G + SAR LFD MP+R+  L+S+NS+L+G+A     +  A Q+F+ MPERD++SWNSML 
Sbjct: 181 GLLPSARHLFDQMPVRD--LVSYNSMLSGHAA-AGDMDGARQLFDGMPERDVVSWNSMLA 237

Query: 259 GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
           G  +CG M++A+ +FD MP+RDVVSW +M+DGYA+ G V  AR +FD MP+R  V+ N +
Sbjct: 238 GHTRCGDMEEARRMFDAMPERDVVSWNSMLDGYAQAGDVLAARAVFDGMPRRSTVSWNVV 297

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
           +  Y R     + L +FD M       P++ + V VL+A   LG +++G  +H  + +  
Sbjct: 298 LALYARVKNWRECLRLFDAMMAVGAAVPNEKTFVSVLTACGSLGDLERGKRVHDLVRQRW 357

Query: 379 FSL--NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
            +L  +     AL+ MY+KCG +E A  +F+ + + SV  WN+MI G  +HG  E A +L
Sbjct: 358 ETLVPDVLLLTALLTMYAKCGVMEAARVIFDSMGERSVPSWNSMIIGYGLHGQSEKALEL 417

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
            +EMER    P++ TF  +L++CAH GLV EG  CF+ M R++ +EP+ +H+GCM+D+LG
Sbjct: 418 FLEMERTGPRPNETTFVCVLSSCAHGGLVLEGWWCFDRMVRLYGVEPKAEHFGCMMDLLG 477

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556
           RAG +  +  L++++  + +  +W  ++SA R      +GE V K LI M       YVL
Sbjct: 478 RAGLLTDSDTLVQNLQEKASPALWGAMVSASRAQNGSRLGEFVGKKLIEMRPKEVGPYVL 537

Query: 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
           LSN++AG G WND  +VR MMK    +K  G S +      H     D
Sbjct: 538 LSNIYAGEGRWNDVEKVREMMKGNGAEKDVGLSLVGSSEPEHRIGTED 585



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 117/249 (46%), Gaps = 26/249 (10%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL-VLKACSRLGLIEEGL 139
           ++    WN ++  Y+   + +E L +F  M+  G +V      + VL AC  LG +E G 
Sbjct: 288 RRSTVSWNVVLALYARVKNWRECLRLFDAMMAVGAAVPNEKTFVSVLTACGSLGDLERGK 347

Query: 140 QIHGLLRKV--AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           ++H L+R+       D+ L   L+++Y +CG +E AR +FD MG R   S+NSMI GY  
Sbjct: 348 RVHDLVRQRWETLVPDVLLLTALLTMYAKCGVMEAARVIFDSMGERSVPSWNSMIIGYGL 407

Query: 198 SGNIESARELFDSMPIRER-----NLISWNSVLNGYAQLKSGLQF-AWQIFEKMPERDLI 251
            G  E A ELF  M   ER     N  ++  VL+  A    GL    W  F++M     +
Sbjct: 408 HGQSEKALELFLEM---ERTGPRPNETTFVCVLSSCAH--GGLVLEGWWCFDRMVRLYGV 462

Query: 252 SWNSMLHGCV-----KCGKMDDAQALFDKMPKRDVVS-WANMIDGY-----AKLGRVDIA 300
              +   GC+     + G + D+  L   + ++   + W  M+        ++LG   + 
Sbjct: 463 EPKAEHFGCMMDLLGRAGLLTDSDTLVQNLQEKASPALWGAMVSASRAQNGSRLGEF-VG 521

Query: 301 RRLFDEMPK 309
           ++L +  PK
Sbjct: 522 KKLIEMRPK 530


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 201/514 (39%), Positives = 296/514 (57%), Gaps = 23/514 (4%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYV--RCGYLEFARQLFDKMGI 182
           + + CS    +E   Q+H    K A  +  F+ + L++LY   +   L +AR +FD++  
Sbjct: 22  LFQTCSAPQEVE---QLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQR 78

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSMPIRER--NLISWNSVLNGYAQL---KSGLQF 237
           R  + +N++I  YV++        LF  + + E   +  +   V+ G A+L   + G Q 
Sbjct: 79  RSLIHWNTIIKCYVENQFSHDGIVLFHEL-VHEYLPDNFTLPCVIKGCARLGVVQEGKQI 137

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV-----------SWAN 286
                +     D+    S+++   KCG++D A+ +FD M  +DVV           SW  
Sbjct: 138 HGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNA 197

Query: 287 MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP 346
           MI+GY K G  D A  LF +MP  D+V  N M+ GY  NG  M A+++F  M  +L   P
Sbjct: 198 MINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMF-FMMLKLGSRP 256

Query: 347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVF 406
             A+LV VLSA++ L  + KG  IH Y+EK+ F L+G  G +LI+MY+KCG IE+A+ VF
Sbjct: 257 SHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVF 316

Query: 407 EQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVK 466
             I+   V HW A+I GL IHG+   A  L +EM +  ++P+ I F G+LNAC HAGLV 
Sbjct: 317 RAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVD 376

Query: 467 EGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           +G   F++M   +K+EP L+HYGC+VDIL RAGH+E A+N IE+MP+ PN VIW +LL  
Sbjct: 377 DGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGG 436

Query: 527 CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLP 586
            RN+  +++GE  A+ +I +       Y+LLSNM+A  GMW     VR MM +R  +K P
Sbjct: 437 SRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDP 496

Query: 587 GCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           GCS +E +G +HEF V D S  Q ++IY  +  M
Sbjct: 497 GCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEM 530



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 148/514 (28%), Positives = 256/514 (49%), Gaps = 47/514 (9%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           L L + C    +V Q+HA  + T    +  ++++L+A +S      L  +AR IF +   
Sbjct: 20  LSLFQTCSAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLG-YARSIFDRI-- 76

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
             +++    WN IIK Y       + +V+F  ++   +  D F+   V+K C+RLG+++E
Sbjct: 77  --QRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYLP-DNFTLPCVIKGCARLGVVQE 133

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS-----------V 186
           G QIHGL  K+ FGSD+F+Q  L+++Y +CG ++ AR++FD M  +D            V
Sbjct: 134 GKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLV 193

Query: 187 SYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM- 245
           S+N+MI+GY+KSG+ +SA ELF  MPI +  L++WN ++ GY +L      A ++F  M 
Sbjct: 194 SWNAMINGYMKSGDFDSALELFYQMPIWD--LVTWNLMIAGY-ELNGQFMDAVKMFFMML 250

Query: 246 ------PERDLISWNSMLHGCVKCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVD 298
                     L+S  S + G    GK     +  +K   + D +   ++I+ YAK G ++
Sbjct: 251 KLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIE 310

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
            A  +F  + K+ V    A++ G   +G +  AL +F  M C+  L P+    + VL+A 
Sbjct: 311 SALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEM-CKTGLKPNAIIFIGVLNAC 369

Query: 359 AQLGHIDKGVAIHRYLEKD-QFSLNGKHGVALIDMYSKCGSIENAIKVFEQ--IEDGSVD 415
              G +D G      +  + +     +H   L+D+  + G +E A    E   I    V 
Sbjct: 370 NHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVI 429

Query: 416 HWNAMINGLAIHG---LGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGLVKEGLLC 471
            W +++ G   HG   +GE A   ++E     + P+ I  +  L N  A +G+ ++    
Sbjct: 430 -WMSLLGGSRNHGKIDIGEYAAQRVIE-----VAPETIGCYILLSNMYAASGMWEKVSHV 483

Query: 472 FELM-RRIHKLEP---ELQHYGCMVD-ILGRAGH 500
            E+M +R  + +P    ++H G + + I+G   H
Sbjct: 484 REMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISH 517


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 223/690 (32%), Positives = 359/690 (52%), Gaps = 89/690 (12%)

Query: 3   VSANYNQPCNSTQSTL-LLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPC 61
           +  ++ QP  + +     L   C       ++HA ++ +G I++  ++ +LV  ++S   
Sbjct: 64  IPFHWRQPAKNEEIDFNSLFDSCTKTLLAKRLHALLVVSGKIQSNFISIRLVNLYASLGD 123

Query: 62  TPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEAL-VMFCLMLDNGVSVDKF 120
             L+   R  F +     ++KD + WN++I  Y      +EA+   + L+L      D +
Sbjct: 124 VSLS---RGTFDQI----QRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFY 176

Query: 121 SASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
           +   VLKAC  L    +G +IH  + K+ F  D+F+   LI +Y R G++  AR LFD M
Sbjct: 177 TFPPVLKACQTL---VDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDM 233

Query: 181 GIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNL--ISWNSVLNGYAQL------- 231
             RD  S+N+MI G +++GN   A ++ D M +   N+  ++  S+L   AQL       
Sbjct: 234 PFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTAT 293

Query: 232 -------KSGLQF--------------------AWQIFEKMPERDLISWNSMLHGCVKCG 264
                  K GL+F                    A ++F++M  RD++SWNS++    +  
Sbjct: 294 LIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQND 353

Query: 265 KMDDAQALFDKMP--------------------KRD--------------------VVSW 284
               A+  F KM                      RD                    VV  
Sbjct: 354 DPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIG 413

Query: 285 ANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYL 344
             ++D YAKLG +D A ++F+ +P +DVV+ N ++ GY +NG + +A+E++  M+    +
Sbjct: 414 NAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREI 473

Query: 345 HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIK 404
             +  + V +L+A A +G + +G+ IH +L K    L+   G  LID+Y KCG + +A+ 
Sbjct: 474 KLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMC 533

Query: 405 VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL 464
           +F Q+   S   WNA+I+   IHG GE A  L  EM+   ++PD +TF  LL+AC+H+GL
Sbjct: 534 LFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGL 593

Query: 465 VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
           V EG   F LM+  + ++P L+HYGCMVD+LGRAG +E A + I+DMP+ P+  IW  LL
Sbjct: 594 VDEGKWFFHLMQE-YGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALL 652

Query: 525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKK 584
            ACR + N+ +G+  +  L  +DS N   YVLLSN++A +G W    +VRS+ +ER LKK
Sbjct: 653 GACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKK 712

Query: 585 LPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
            PG S IE+   V  F+  ++S  + ++IY
Sbjct: 713 TPGWSSIEVNRRVDIFYTGNQSHPKCKEIY 742


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 229/687 (33%), Positives = 347/687 (50%), Gaps = 86/687 (12%)

Query: 14  TQSTLLLLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY 70
           +++ + L ++C  L D     Q+   +I +G   N +    L+     S C  + E AR 
Sbjct: 61  SRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKL--HSICGNMLE-ARQ 117

Query: 71  IFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS 130
            F       E K    WNAII  Y+     KEA  +F  M+D  +     +  +VL ACS
Sbjct: 118 TFDSV----ENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACS 173

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
               ++ G + H  + KV F SD  +   L+S+YV+ G ++ ARQ+FD +  RD  ++N 
Sbjct: 174 SPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNV 233

Query: 191 MIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNG-------------YAQ-LKSG 234
           MI GY KSG+ E A +LF  M     + N IS+ S+L+G             +AQ + +G
Sbjct: 234 MIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTG 293

Query: 235 L--------------------QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFD 274
           L                    + A ++F+KM  RD++SW  M+ G  +   ++DA  LF 
Sbjct: 294 LVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFA 353

Query: 275 KMPKR----DVVSWANMIDG-----------------------------------YAKLG 295
            M +     D +++ ++I+                                    YAK G
Sbjct: 354 TMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCG 413

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
            +  AR++FD M +RDVV+ +AM+G YV NG   +A E F  M+    + PD  + + +L
Sbjct: 414 AIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMK-RNNVEPDVVTYINLL 472

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
           +A   LG +D G+ I+    K     +   G ALI+M  K GSIE A  +FE +    V 
Sbjct: 473 NACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVV 532

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            WN MI G ++HG    A DL   M +    P+ +TF G+L+AC+ AG V+EG   F  +
Sbjct: 533 TWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYL 592

Query: 476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNV 535
                + P ++ YGCMVD+LGRAG ++ A  LI  MP++PN  IW TLL+ACR Y NL+V
Sbjct: 593 LDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDV 652

Query: 536 GEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG 595
            E  A+  +  +  + + YV LS+M+A  GMW +  +VR +M+ R ++K  GC+WIE+EG
Sbjct: 653 AERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEG 712

Query: 596 VVHEFFVRDKSRLQVRDIYYMLDNMWT 622
            +H F V D+S  Q  +IY  L  + T
Sbjct: 713 KLHTFVVEDRSHPQAGEIYAELARLMT 739



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/404 (27%), Positives = 192/404 (47%), Gaps = 33/404 (8%)

Query: 144 LLRKVAFGSDLFLQNCLISLYVRCGYLE---FARQLFDKM---GIRDSV-SYNSMIDGYV 196
           +L ++  GS+       + L+ RC  L      +Q+ D +   G + ++   N++I  + 
Sbjct: 48  VLHRLGEGSNHIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHS 107

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQL---KSGLQFAWQIFEKMPERDLISW 253
             GN+  AR+ FDS  +  + +++WN+++ GYAQL   K       Q+ ++  E  +I++
Sbjct: 108 ICGNMLEARQTFDS--VENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITF 165

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVS----WANMIDGYAKLGRVDIARRLFDEMPK 309
             +L  C     +   +    ++ K   VS       ++  Y K G +D AR++FD + K
Sbjct: 166 LIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYK 225

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           RDV   N M+GGY ++G   KA ++F  MQ E +  P+  S + +L   +    +  G A
Sbjct: 226 RDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGF-KPNRISFLSILDGCSTPEALAWGKA 284

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
           +H          + +   ALI MY  CGSIE A +VF++++   V  W  MI G A +  
Sbjct: 285 VHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSN 344

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK------LEP 483
            E AF L   M+   I+PD IT+  ++NACA +  +        L R IH          
Sbjct: 345 IEDAFGLFATMQEEGIQPDRITYIHIINACASSADLS-------LAREIHSQVVRAGFGT 397

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSA 526
           +L     +V +  + G I+ AR + +   M   DV+ W  ++ A
Sbjct: 398 DLLVDTALVHMYAKCGAIKDARQVFD--AMSRRDVVSWSAMIGA 439



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 168/378 (44%), Gaps = 56/378 (14%)

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           AR+ FD +  + VV  NA++ GY + G+  +A  +F  M  E  + P   + +IVL A +
Sbjct: 115 ARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEA-MEPSIITFLIVLDACS 173

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
               +  G   H  + K  F  + + G AL+ MY K GS++ A +VF+ +    V  +N 
Sbjct: 174 SPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNV 233

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA-----------HAGLVKEG 468
           MI G A  G GE AF L   M++   +P+ I+F  +L+ C+           HA  +  G
Sbjct: 234 MIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTG 293

Query: 469 LL-----------------CFELMRRI-HKLE-PELQHYGCMVDILGRAGHIEAARNLIE 509
           L+                   E  RR+  K++  ++  +  M+       +IE A  L  
Sbjct: 294 LVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFA 353

Query: 510 DMP---MEPNDVIWRTLLSACRNYENLNVGEPVAKHLI----GMDSSNSSSYVLLSNMFA 562
            M    ++P+ + +  +++AC +  +L++   +   ++    G D    ++ V   +M+A
Sbjct: 354 TMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALV---HMYA 410

Query: 563 GLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD-NMW 621
             G   DAR+V   M  R++      SW  + G     +V +    +  + ++++  N  
Sbjct: 411 KCGAIKDARQVFDAMSRRDV-----VSWSAMIGA----YVENGCGEEAFETFHLMKRNNV 461

Query: 622 TPDSVA-----TSCTHYG 634
            PD V       +C H G
Sbjct: 462 EPDVVTYINLLNACGHLG 479


>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 590

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 198/542 (36%), Positives = 289/542 (53%), Gaps = 64/542 (11%)

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           Q H L  K+    D++  N  I    R G +  ARQLFD+M  RD+VS+NS+I GY K+G
Sbjct: 33  QFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWKNG 92

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
             + ++ LF  MP +  N++SWNS++ G  +    +  AWQ F+ MP+R+  SWN+M+ G
Sbjct: 93  CFDESKRLFGLMPTK--NVVSWNSMIAGCIE-DERIDEAWQYFQAMPQRNTASWNAMISG 149

Query: 260 CV-------------------------------KCGKMDDAQALFDKMPKRDVVSWANMI 288
            V                               K G+++ A+ALF+ MP+++VVSW  MI
Sbjct: 150 LVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMI 209

Query: 289 DGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE------- 341
            GY + G+ D A  LF++MP +++VA  AM+ GY + G + KA  +FD + C        
Sbjct: 210 SGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNA 269

Query: 342 --------------LYLH---------PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
                         L LH         PD ++L+ VL+A + L  + +G   H  + K  
Sbjct: 270 MITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSG 329

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
           +        ALI MY KCGSI ++   F QI+   V  WNAMI   A HG  + A     
Sbjct: 330 YESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFG 389

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
           EM    +EPD ITF  LL+AC HAG V E L  F  M   +K+ P  +H+ C+VDIL R 
Sbjct: 390 EMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRG 449

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           G +E A  +I++MP E +  IW  LL+AC  + N+ +GE  AK ++ ++  NS +YV+LS
Sbjct: 450 GQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLS 509

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           N++A  GMW +  RVR +M+E+ +KK P  SW+E++  VH F   D S  ++  I   L 
Sbjct: 510 NIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHFFLGDDASHPEIHRIRLELK 569

Query: 619 NM 620
            M
Sbjct: 570 GM 571



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 60/291 (20%)

Query: 25  KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDP 84
           + + D N +    + TG+ K    T K    F   PC  L                    
Sbjct: 226 EQMPDKNIVAMTAMITGYCKEGK-TDKAKILFDQIPCRDLAS------------------ 266

Query: 85  FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGL 144
             WNA+I  Y+     +EAL +   ML  G+  D  +   VL ACS L  ++EG + H L
Sbjct: 267 --WNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVL 324

Query: 145 LRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESA 204
           + K  + S + + N LI++Y +CG +  +   F ++   D VS+N+MI  + + G  + A
Sbjct: 325 VLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRA 384

Query: 205 RELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCG 264
                               L  + +++S             E D I++ S+L  C   G
Sbjct: 385 --------------------LASFGEMRS----------NRVEPDGITFLSLLSACGHAG 414

Query: 265 KMDDAQALFDKM-------PKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           K+ ++   F+ M       P+ +   +A ++D  ++ G+V+ A ++  EMP
Sbjct: 415 KVHESLNWFNSMIESYKIVPRPE--HFACLVDILSRGGQVEKAYKIIQEMP 463


>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
          Length = 752

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 186/494 (37%), Positives = 287/494 (58%), Gaps = 39/494 (7%)

Query: 160 LISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNL 218
           +I+ Y R G L  AR LF+ +  + + V  N+M+ GY K+   + AR LFD+MP   ++L
Sbjct: 1   MITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMP--AKDL 58

Query: 219 ISWNSVLNGY---AQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK 275
           +SWNS+L GY    +++ GLQF    FE+M ERD++SWN M+ G V+ G ++ +   F+K
Sbjct: 59  VSWNSMLTGYTRNGEMRLGLQF----FEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEK 114

Query: 276 MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
           +P  + VSW  M+ G+A+ G++  ARRLFD+MP R+VVA NAM+  YV+N +  +A+ +F
Sbjct: 115 IPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLF 174

Query: 336 DNM-----------------------------QCELYLHPDDASLVIVLSAIAQLGHIDK 366
             M                             Q      PD ++    LS+ A L  +  
Sbjct: 175 MEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNKPDQSTFACGLSSCAHLAALQV 234

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G  +H+ + K  ++ +     ALI MY+KCGSI +A  +F+ I+   V  WN++I   A+
Sbjct: 235 GKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYAL 294

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           +G G  A  L  +ME   + PD++TF G+L+AC+H GL+ +GL  F+ M + + +EP  +
Sbjct: 295 NGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAE 354

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HY CMVD+LGRAG +E A  L+  M +  N  IW  LL ACR + NL + +  A+ L+  
Sbjct: 355 HYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEF 414

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           +   +S+YVLLSNM A  G W++  RVR +MKE+  +K PG SWIEL+  VH F   D +
Sbjct: 415 EPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVHAFLSEDPA 474

Query: 607 RLQVRDIYYMLDNM 620
             +  ++ ++L ++
Sbjct: 475 HPRAVELCHILRSL 488



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 132/333 (39%), Gaps = 82/333 (24%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLD-NGVS----------------------------- 116
           WNA+I  Y       EA+ +F  M + N +S                             
Sbjct: 154 WNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNK 213

Query: 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQL 176
            D+ + +  L +C+ L  ++ G Q+H L+ K  + +DLF+ N LI++Y +CG +  A  L
Sbjct: 214 PDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELL 273

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQ 236
           F  +   D VS+NS+I  Y  +GN   A +LF  M +             G A       
Sbjct: 274 FKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVE------------GVAP------ 315

Query: 237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS-----WANMIDGY 291
                       D +++  +L  C   G +D    LF  M +   +      +A M+D  
Sbjct: 316 ------------DEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLL 363

Query: 292 AKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE-------LYL 344
            + GR++ A +L   M        NA  G +   G  + A  I  N++         L  
Sbjct: 364 GRAGRLEEAFQLVRGM------KINANAGIW---GALLGACRIHGNLELAKFAAEKLLEF 414

Query: 345 HPDDASLVIVLSAI-AQLGHIDKGVAIHRYLEK 376
            P   S  ++LS + A+ G  D+   + R +++
Sbjct: 415 EPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKE 447



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 97/195 (49%), Gaps = 15/195 (7%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           Q+H  ++ +G+  +  ++  L+  ++   C  ++  A  +F     F    D   WN++I
Sbjct: 237 QLHQLVMKSGYATDLFVSNALITMYAK--CGSISS-AELLFKDIDHF----DVVSWNSLI 289

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
             Y+   + +EAL +F  M   GV+ D+ +   +L ACS +GLI++GL++   + + A+ 
Sbjct: 290 AAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQ-AYN 348

Query: 152 SDLFLQN--CLISLYVRCGYLEFARQLFDKMGIRDSVS-YNSMIDGYVKSGNIE----SA 204
            +   ++  C++ L  R G LE A QL   M I  +   + +++      GN+E    +A
Sbjct: 349 IEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAA 408

Query: 205 RELFDSMPIRERNLI 219
            +L +  P +  N +
Sbjct: 409 EKLLEFEPHKTSNYV 423


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 212/669 (31%), Positives = 365/669 (54%), Gaps = 58/669 (8%)

Query: 3   VSANYNQPCNSTQSTLL-LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPC 61
           +S  ++QP N        LL++C   +   QIH+++I TG  ++  L  ++V+ ++    
Sbjct: 22  ISIIHHQPNNDVLDFFNDLLQQCSKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAG--- 78

Query: 62  TPLTEFARYIFFKYHAFREKKDPFLWNAIIKT-YSHGLDPKEALVMFCLMLDNGVSVDKF 120
             L   A+ +F +        +  LWN+I++   +HG   +EAL ++C M   GVS D F
Sbjct: 79  FGLVSDAQRVF-EVSPIECFSNLLLWNSILRANVAHGY-CEEALEIYCRMRKLGVSADGF 136

Query: 121 SASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
           +  LV++AC+ +G  +    +HG + ++ F  +L + N L+ +Y + G ++ AR++F++M
Sbjct: 137 TFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERM 196

Query: 181 GIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFA 238
            +R  VS+N+M+ GY  + +   A E+F  M     E NL++W S+L+ +A+    ++  
Sbjct: 197 AVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVE-T 255

Query: 239 WQIFEKMPER-----------------DLISWNS--MLHGCV------------------ 261
            ++F +M  R                 DL +++   ++HG V                  
Sbjct: 256 MELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICL 315

Query: 262 --KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD-------- 311
             K G ++ A+ LF ++  +++VSW  +I  YA LG  D A  +F ++ K D        
Sbjct: 316 YGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPN 375

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           VV+ +A++GG+   G   +ALE+F  MQ    +  +  ++  VLS  A+L  +  G  IH
Sbjct: 376 VVSWSAVIGGFASKGQGEEALELFRRMQLA-KVKANSVTIASVLSVCAELAALHLGREIH 434

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
            ++ +     N   G  LI+MY+K GS +    VFE+IE+  +  WN M+ G  IHGLGE
Sbjct: 435 GHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGE 494

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            A     +M +   EPD +TF  +L+AC+HAGLV EG   F+ M +  ++EP+++HY CM
Sbjct: 495 NAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACM 554

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551
           VD+LGRAG ++ A  +++ MP+EPN  +W  LL++CR ++N  V E  A  +  ++S  +
Sbjct: 555 VDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIA 614

Query: 552 SSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVR 611
            SY+LLSN++A  G W D+ +VR   K + LKK PG SWI+++  V+ F   +    ++ 
Sbjct: 615 GSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELE 674

Query: 612 DIYYMLDNM 620
           ++Y +L ++
Sbjct: 675 EVYRILKDL 683


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 203/592 (34%), Positives = 329/592 (55%), Gaps = 49/592 (8%)

Query: 30  VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNA 89
           + QIHAR++  G   +  L TKL+   +SS    +T FAR +F        +   F WNA
Sbjct: 37  LKQIHARLLVLGLQFSGFLITKLI--HASSSFGDIT-FARQVFDDL----PRPQIFPWNA 89

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA 149
           II+ YS     ++AL+M+  M    VS D F+   +LKACS L  ++ G  +H  + ++ 
Sbjct: 90  IIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLG 149

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD 209
           F +D+F+QN LI+LY +C  L                                SAR +F+
Sbjct: 150 FDADVFVQNGLIALYAKCRRLG-------------------------------SARTVFE 178

Query: 210 SMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----ISWNSMLHGCVKCGK 265
            +P+ ER ++SW ++++ YAQ    ++ A +IF +M + D+    ++  S+L+       
Sbjct: 179 GLPLPERTIVSWTAIVSAYAQNGEPME-ALEIFSQMRKMDVKPDWVALVSVLNAFTCLQD 237

Query: 266 MDDAQALFDKMPKRDVVSWANMIDG----YAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
           +   +++   + K  +    +++      YAK G+V  A+ LFD+M   +++  NAM+ G
Sbjct: 238 LKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISG 297

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
           Y +NGY+ +A+++F  M     + PD  S+   +SA AQ+G +++  +++ Y+ +  +  
Sbjct: 298 YAKNGYAREAIDMFHEM-INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRD 356

Query: 382 NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEME 441
           +     ALIDM++KCGS+E A  VF++  D  V  W+AMI G  +HG    A  L   ME
Sbjct: 357 DVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAME 416

Query: 442 RLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHI 501
           R  + P+D+TF GLL AC H+G+V+EG   F  M   HK+ P+ QHY C++D+LGRAGH+
Sbjct: 417 RGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMAD-HKINPQQQHYACVIDLLGRAGHL 475

Query: 502 EAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF 561
           + A  +I+ MP++P   +W  LLSAC+ + ++ +GE  A+ L  +D SN+  YV LSN++
Sbjct: 476 DQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLY 535

Query: 562 AGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
           A   +W+    VR  MKE+ L K  GCSW+E+ G +  F V DKS  +  +I
Sbjct: 536 AAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEI 587


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 212/669 (31%), Positives = 365/669 (54%), Gaps = 58/669 (8%)

Query: 3   VSANYNQPCNSTQSTLL-LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPC 61
           +S  ++QP N        LL++C   +   QIH+++I TG  ++  L  ++V+ ++    
Sbjct: 22  ISIIHHQPNNDVLDFFNDLLQQCSKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAG--- 78

Query: 62  TPLTEFARYIFFKYHAFREKKDPFLWNAIIKT-YSHGLDPKEALVMFCLMLDNGVSVDKF 120
             L   A+ +F +        +  LWN+I++   +HG   +EAL ++C M   GVS D F
Sbjct: 79  FGLVSDAQRVF-EVSPIECFSNLLLWNSILRANVAHGY-CEEALEIYCRMRKLGVSADGF 136

Query: 121 SASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
           +  LV++AC+ +G  +    +HG + ++ F  +L + N L+ +Y + G ++ AR++F++M
Sbjct: 137 TFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERM 196

Query: 181 GIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFA 238
            +R  VS+N+M+ GY  + +   A E+F  M     E NL++W S+L+ +A+    ++  
Sbjct: 197 AVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVE-T 255

Query: 239 WQIFEKMPER-----------------DLISWNS--MLHGCV------------------ 261
            ++F +M  R                 DL +++   ++HG V                  
Sbjct: 256 MELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICL 315

Query: 262 --KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD-------- 311
             K G ++ A+ LF ++  +++VSW  +I  YA LG  D A  +F ++ K D        
Sbjct: 316 YGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPN 375

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           VV+ +A++GG+   G   +ALE+F  MQ    +  +  ++  VLS  A+L  +  G  IH
Sbjct: 376 VVSWSAVIGGFASKGQGEEALELFRRMQLA-KVKANSVTIASVLSVCAELAALHLGREIH 434

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
            ++ +     N   G  LI+MY+K GS +    VFE+IE+  +  WN M+ G  IHGLGE
Sbjct: 435 GHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGE 494

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            A     +M +   EPD +TF  +L+AC+HAGLV EG   F+ M +  ++EP+++HY CM
Sbjct: 495 NAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACM 554

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551
           VD+LGRAG ++ A  +++ MP+EPN  +W  LL++CR ++N  V E  A  +  ++S  +
Sbjct: 555 VDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIA 614

Query: 552 SSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVR 611
            SY+LLSN++A  G W D+ +VR   K + LKK PG SWI+++  V+ F   +    ++ 
Sbjct: 615 GSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELE 674

Query: 612 DIYYMLDNM 620
           ++Y +L ++
Sbjct: 675 EVYRILKDL 683


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 199/597 (33%), Positives = 323/597 (54%), Gaps = 32/597 (5%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY--IFFKYHA 77
           +L  C +L    +IH R+  +G           + SF S     +T +AR+  +      
Sbjct: 116 VLGACSSLAQGREIHNRVFYSG-----------LDSFQSLANALVTMYARFGSVGDAKRM 164

Query: 78  FR--EKKDPFLWNAIIKTYSHGLDPKEALVMF----CLMLDNGVSVDKFSASLVLKACSR 131
           F+  + +D   WNA+I  +S   D   AL +F    C M  N  +        V+   S 
Sbjct: 165 FQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDMKPNSTTYIN-----VISGFST 219

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
             ++ EG +IH  +    F SDL +   LI++Y +CG    AR++FDKM  RD VS+N M
Sbjct: 220 PEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVM 279

Query: 192 IDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKS---GLQFAWQIFEKMP 246
           I  YV++G+   A EL+  + +   +R   ++ S+L   + +K+   G      I E+  
Sbjct: 280 IGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGL 339

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG---RVDIARRL 303
           + ++    ++++   KCG +++A+ +F+ M  RD V+W+ +I  YA  G       AR++
Sbjct: 340 DSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKV 399

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           FD +  RD +  NAM+  YV+NG ++ A++IF  M     L PD  + + VL A A LG 
Sbjct: 400 FDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGR 459

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           + +  A+H  + + +   N      LI+MY++CGS+E A ++F   ++ +V  W AM+  
Sbjct: 460 LSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAA 519

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
            + +G    A DL  EM+   ++PDD+T+T +L  C H G +++G   F  M  +H L P
Sbjct: 520 FSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAP 579

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
              H+  MVD+LGR+G +  A+ L+E MP EP+ V W T L+ACR +  L +GE  A+ +
Sbjct: 580 TADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERV 639

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
             +D S+++ Y+ +SN++A  GMW     VR  M+ER LKKLPG S+IE++G +HEF
Sbjct: 640 YELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEF 696



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 137/527 (25%), Positives = 246/527 (46%), Gaps = 53/527 (10%)

Query: 9   QPCNSTQSTLLLLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLT 65
           QP N T  T+L    C +  DV +   +H R+  + F ++T +   L++ +    C  L 
Sbjct: 4   QPDNVTFLTVLC--SCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYG--KCDSLV 59

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
           + AR +F +   +R++ +   WNA+I  Y+      EALV++  M   G+  D  +   V
Sbjct: 60  D-ARSVF-ESMDWRQR-NVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSV 116

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           L ACS L    +G +IH  +      S   L N L+++Y R G +  A+++F  +  RD 
Sbjct: 117 LGACSSLA---QGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDE 173

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRER-NLISWNSVLNGYAQ---LKSGLQFAWQI 241
            S+N++I  + +SG+   A  +F  M    + N  ++ +V++G++    L  G +   +I
Sbjct: 174 TSWNAVILAHSQSGDWSGALRIFKEMKCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEI 233

Query: 242 FEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIAR 301
                + DL+   ++++   KCG   +A+ +FDKM KRD+VSW                 
Sbjct: 234 VANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSW----------------- 276

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
                         N M+G YV+NG   +ALE++  +  E +     A+ V +L A + +
Sbjct: 277 --------------NVMIGCYVQNGDFHEALELYQKLDMEGFKRT-KATFVSILGACSSV 321

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
             + +G  +H ++ +           AL++MY+KCGS+E A KVF  +++     W+ +I
Sbjct: 322 KALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLI 381

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
              A +G G+ A       +RL    D I +  ++      G     +  F  M     L
Sbjct: 382 GAYASNGYGKDARKARKVFDRLG-SRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGL 440

Query: 482 EPELQHYGCMVDI---LGRAGHIEAARNLIEDMPMEPNDVIWRTLLS 525
           +P+   +  +++    LGR   ++A    I +  +E N V+  TL++
Sbjct: 441 KPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLIN 487



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 107/407 (26%), Positives = 188/407 (46%), Gaps = 41/407 (10%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           VL +CS  G + EG  +H  +R   F  D  + N LIS+Y +C                 
Sbjct: 13  VLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKC----------------- 55

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQI 241
               +S++D          AR +F+SM  R+RN++SWN+++  YAQ       L   W++
Sbjct: 56  ----DSLVD----------ARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRM 101

Query: 242 FEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN-MIDGYAKLGRVDIA 300
             +    D +++ S+L  C    +  +              S AN ++  YA+ G V  A
Sbjct: 102 NLQGLGTDHVTFVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDA 161

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
           +R+F  +  RD  + NA++  + ++G    AL IF  M+C+  + P+  + + V+S  + 
Sbjct: 162 KRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCD--MKPNSTTYINVISGFST 219

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
              + +G  IH  +  + F  +     ALI+MY KCGS   A +VF++++   +  WN M
Sbjct: 220 PEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVM 279

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE-LMRRIH 479
           I     +G    A +L  +++    +    TF  +L AC+    + +G L    ++ R  
Sbjct: 280 IGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILER-- 337

Query: 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
            L+ E+     +V++  + G +E AR +   M    + V W TL+ A
Sbjct: 338 GLDSEVAVATALVNMYAKCGSLEEARKVFNAMK-NRDAVAWSTLIGA 383



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 117/271 (43%), Gaps = 34/271 (12%)

Query: 345 HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIK 404
            PD+ + + VL + +  G + +G A+H  +   +F  +   G ALI MY KC S+ +A  
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 405 VFEQIE--DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA-- 460
           VFE ++    +V  WNAMI   A +G    A  L   M    +  D +TF  +L AC+  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 461 ------HAGLVKEGLLCFELM------------------RRIHKLEP-ELQHYGCMVDIL 495
                 H  +   GL  F+ +                  R    L+  +   +  ++   
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAH 183

Query: 496 GRAGHIEAARNLIEDMP--MEPNDVIWRTLLSACRNYENLNVGEPVAKHLI--GMDSSNS 551
            ++G    A  + ++M   M+PN   +  ++S     E L  G  +   ++  G DS   
Sbjct: 184 SQSGDWSGALRIFKEMKCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLV 243

Query: 552 SSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
            +  L+ NM+   G  ++AR V   MK+R++
Sbjct: 244 VATALI-NMYGKCGSSHEAREVFDKMKKRDM 273


>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
          Length = 914

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 208/605 (34%), Positives = 323/605 (53%), Gaps = 71/605 (11%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           L R       V ++HA+++  G   N     +LV++++     P +   R +F    A R
Sbjct: 358 LPRGLPRAAHVRELHAQVLKQGLHLNPRAAARLVSAYALLRLLPSS---RRVF---DAIR 411

Query: 80  EK-KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
           +   D FL N +++ Y+ G  P++AL  F  M       D F+ S ++KA S  G+    
Sbjct: 412 DPHADAFLANTMLRAYALGGAPRDALAAFSAMPRR----DSFTYSFLIKALSAAGVAP-- 465

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
                 +R V             S  V+ G +E            D+   N++ID Y K+
Sbjct: 466 ------VRAVH------------SHVVKLGSVE------------DTFVGNALIDAYSKN 495

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSML 257
           G    AR++FD MP  ER+++SWN+ +   A ++ G L  A ++F++MPE+D +SWN++L
Sbjct: 496 GGFSDARKVFDEMP--ERDVVSWNTAM--AAMVREGELAGARKLFDEMPEKDTVSWNTIL 551

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNA 317
            G  K G+++ A  LF +MP+R+VVSW+ M+ GY K G +++AR +FD+MP +++V    
Sbjct: 552 DGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPGKNLVTWTI 611

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           MM                     E  +  D A++V +L+A A+ G +  G  IHRY+ K 
Sbjct: 612 MMK--------------------EASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKR 651

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVF--EQIEDGSVDHWNAMINGLAIHGLGELAFD 435
               +     ALIDM+ KCG +  A  VF  E ++  SV  WN++I G A+HG G+ A +
Sbjct: 652 NLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVS-WNSIIGGFAMHGHGDKALE 710

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           L  +M++    PD +T   +L+AC H G V EG   F  M R + + P+++HYGCM+D+L
Sbjct: 711 LFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRYFSNMERDYGIMPQIEHYGCMIDLL 770

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           GR G I+ A +LI+ MP EPN+VIW +LLSACR ++N+   E     L  +  SN+ +Y 
Sbjct: 771 GRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYA 830

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY 615
           +LSN++A  G W+D  + R  MK    +K  G SW+EL    HEF V D+       I  
Sbjct: 831 VLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISE 890

Query: 616 MLDNM 620
           M+D +
Sbjct: 891 MVDRL 895


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 187/496 (37%), Positives = 288/496 (58%), Gaps = 20/496 (4%)

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM-GIRDSVSYNSMIDGYVKS 198
           QIH  +       +  L   LI  Y+ C  L FAR +FD+   +  ++ +N MI  Y K+
Sbjct: 73  QIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKT 132

Query: 199 GNIESARELFDSMPIRER-------------NLISWNSVLNGYAQLKSGLQFAWQIFEKM 245
            + + +  LF  M    R                S +  L GY +   G+     + +  
Sbjct: 133 PSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGM-----VVKDG 187

Query: 246 PERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFD 305
            E D+   NS+++      +M DA+ +FD+MP+RDV++W +++ GYA  G +  AR LFD
Sbjct: 188 YESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFD 247

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
            MP R+ V+   M+ GYV + +  +AL+ F++M C   + P++A LV +LSA A LG +D
Sbjct: 248 MMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALD 307

Query: 366 KGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
           +G  IH Y++K++  L+     ALIDMY+KCG I+ A +VF+ +    +  W +MI+GL+
Sbjct: 308 QGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLS 367

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL 485
           +HGLG        EM     +PDDIT  G+LN C+H+GLV+EGL  F  M  +  + P+L
Sbjct: 368 MHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKL 427

Query: 486 QHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIG 545
           +HYGC++D+LGRAG +E+A   I+ MPMEP+ V WR LLSACR + ++++GE +  H+  
Sbjct: 428 EHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAE 487

Query: 546 M-DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
           +   S+   YVLLSN++A +G W    +VR  M +R  +  PGCSWIE++GVVHEF   D
Sbjct: 488 LCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWIEIDGVVHEFLAAD 547

Query: 605 KSRLQVRDIYYMLDNM 620
           K   ++ +I   L+ +
Sbjct: 548 KLHPRISEINKKLNEV 563



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 144/461 (31%), Positives = 244/461 (52%), Gaps = 43/461 (9%)

Query: 4   SANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTP 63
           +++++ P +ST   + LL+K  +L  + QIHA+++T G  +NT L   L+ S+    C  
Sbjct: 47  TSSFSLPSHST--FVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIG--CRN 102

Query: 64  LTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG--VSVDKFS 121
           L+ FAR +F ++ +        +WN +I+ YS     +E+L +F  ML +G   S DK++
Sbjct: 103 LS-FARIVFDQFPSL---PPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYT 158

Query: 122 ASLVLKACSRLGLIEE-GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
            + V  ACSR   +   G  +HG++ K  + SD+F+ N L+++Y     +  A+++FD+M
Sbjct: 159 FTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEM 218

Query: 181 GIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF--- 237
             RD +++ S++ GY   G +  ARELFD MP   RN +SW  ++ GY     G +F   
Sbjct: 219 PQRDVITWTSVVKGYAMRGELVRARELFDMMP--GRNDVSWAVMVAGYV----GHRFYNE 272

Query: 238 AWQIFEKMPERDLISWN-----SMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN----MI 288
           A Q F  M   D +  N     S+L  C   G +D  + +   + K  ++  +N    +I
Sbjct: 273 ALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALI 332

Query: 289 DGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD 348
           D YAK GR+D ARR+FD + KRD++   +M+ G   +G   + L  F  M  E +  PDD
Sbjct: 333 DMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGF-KPDD 391

Query: 349 ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG-----KHGVALIDMYSKCGSIENAI 403
            +L+ VL+  +  G +++G++I      D   L G     +H   LID+  + G +E+A 
Sbjct: 392 ITLLGVLNGCSHSGLVEEGLSIFH----DMIPLWGIVPKLEHYGCLIDLLGRAGRLESAF 447

Query: 404 KVFEQIE-DGSVDHWNAMINGLAIHG---LGELAFDLLMEM 440
           +  + +  +  V  W A+++   IHG   LGE   + + E+
Sbjct: 448 EAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAEL 488


>gi|326526103|dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 197/569 (34%), Positives = 310/569 (54%), Gaps = 48/569 (8%)

Query: 93  TYSHGLDPKEALVMFCL---------MLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHG 143
            +SH  DP   +              + D     D  S + ++ A +R G + E      
Sbjct: 35  AFSHVQDPNRRIAELAAAGRVPDARRLFDRTPDRDVVSWTAMVAAYARQGQLHEA---SA 91

Query: 144 LLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIES 203
           LL +     ++     L+S Y R   ++ AR LFD+M  R+ VS+N+M++ Y  +G + +
Sbjct: 92  LLHRPDARRNVVTWTALLSGYARARRVDEARALFDRMPERNVVSWNTMLEAYASAGRMGA 151

Query: 204 ARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVK 262
           A  LFD MP+R+    SWN +L   A ++SG +  A ++FE+MPER+++SW +M+ G  +
Sbjct: 152 ACALFDGMPVRDAG--SWNILL--AALVRSGTMDEARRLFERMPERNVMSWTTMISGLAR 207

Query: 263 CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGY 322
            G  D+A+ALFD MP+R+VVSW  MI GYA+  R+D A  LF  MP+RDV + N M+ G+
Sbjct: 208 SGSADEARALFDGMPERNVVSWNAMISGYARNLRIDEALDLFMNMPERDVASWNIMITGF 267

Query: 323 VRNGYSMKALEIFDNM-------------------QCELYLH-----------PDDASLV 352
           ++N    KA E+FD M                   + E+ L            P+  + +
Sbjct: 268 IQNKDLKKAQELFDEMPKRNVVSWTTMMNGCLQGNESEMALQVFNGMLVDGIRPNQVTFL 327

Query: 353 IVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG 412
             + A + L  + +G  +H+ + K  F  +     +L+ +Y+KCG I  A KVF+   + 
Sbjct: 328 GAVDAGSNLAGLSEGQQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLARKVFDLSGEK 387

Query: 413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCF 472
            V  WN MI   A HG G  A  L  +M+    +P+D+T+ GLL+AC+H+GLV EGL  F
Sbjct: 388 DVISWNGMIAAYAHHGAGVEAIALYEKMQENRYKPNDVTYVGLLSACSHSGLVDEGLRIF 447

Query: 473 ELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEP-NDVIWRTLLSACRNYE 531
           E M +   +    +HY C++D+  RAG ++ A+ LI  + ++P +  +W  LL  C  + 
Sbjct: 448 EYMAKDKSIAVRDEHYSCLIDLCSRAGRLDDAKRLINGLKLKPTSSTVWSALLGGCNAHG 507

Query: 532 NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           N ++G+  A++L+  +  N+ +Y LLSN++A  G W +A ++RS M +R LKK PGCSWI
Sbjct: 508 NESIGDLAARNLLEAEPDNAGTYTLLSNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWI 567

Query: 592 ELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           EL   VH F  RDKS  +   IY +L ++
Sbjct: 568 ELANKVHVFVARDKSHSESELIYSLLQDI 596



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 123/502 (24%), Positives = 219/502 (43%), Gaps = 105/502 (20%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           L  L +  T+++  ++  RM     +  T + + L  S S+       + AR +F     
Sbjct: 171 LAALVRSGTMDEARRLFERMPERNVMSWTTMISGLARSGSA-------DEARALFDGM-- 221

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
              +++   WNA+I  Y+  L   EAL +F  M +                         
Sbjct: 222 --PERNVVSWNAMISGYARNLRIDEALDLFMNMPER------------------------ 255

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
                          D+   N +I+ +++   L+ A++LFD+M  R+ VS+ +M++G ++
Sbjct: 256 ---------------DVASWNIMITGFIQNKDLKKAQELFDEMPKRNVVSWTTMMNGCLQ 300

Query: 198 SGNIESARELFDSM---PIRERNLISWNSVLNG--YAQLKSGLQFAWQIFEKMPERDLIS 252
               E A ++F+ M    IR   +    +V  G   A L  G Q    I +   + D   
Sbjct: 301 GNESEMALQVFNGMLVDGIRPNQVTFLGAVDAGSNLAGLSEGQQVHQMICKTPFQFDNFI 360

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
            +S++    KCG++  A+ +FD   ++DV+SW                            
Sbjct: 361 ESSLMKLYAKCGEIRLARKVFDLSGEKDVISW---------------------------- 392

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
              N M+  Y  +G  ++A+ +++ MQ   Y  P+D + V +LSA +  G +D+G+ I  
Sbjct: 393 ---NGMIAAYAHHGAGVEAIALYEKMQENRY-KPNDVTYVGLLSACSHSGLVDEGLRIFE 448

Query: 373 YLEKDQ-FSLNGKHGVALIDMYSKCGSIENAIKVFE--QIEDGSVDHWNAMINGLAIHG- 428
           Y+ KD+  ++  +H   LID+ S+ G +++A ++    +++  S   W+A++ G   HG 
Sbjct: 449 YMAKDKSIAVRDEHYSCLIDLCSRAGRLDDAKRLINGLKLKPTSSTVWSALLGGCNAHGN 508

Query: 429 --LGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGLVKEGL-LCFELMRRIHKLEPE 484
             +G+LA   L+E      EPD+  T+T L N  A AG  KE   +  E+  R  K +P 
Sbjct: 509 ESIGDLAARNLLE-----AEPDNAGTYTLLSNIYASAGKWKEAAKIRSEMNDRGLKKQP- 562

Query: 485 LQHYGCMVDILGRAGHIEAARN 506
               GC    L    H+  AR+
Sbjct: 563 ----GCSWIELANKVHVFVARD 580


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 185/489 (37%), Positives = 288/489 (58%), Gaps = 10/489 (2%)

Query: 116 SVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQ 175
           SV  F++  +L+   R GL+ + +++   + +    S   L   L+      G +  AR+
Sbjct: 111 SVVSFTS--LLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLD----AGRVNEARR 164

Query: 176 LFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL 235
           LFD+M  RD V++ +M+ GY ++G I  AR LFD MP  +RN++SW ++++GYAQ    +
Sbjct: 165 LFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP--KRNVVSWTAMISGYAQ-NGEV 221

Query: 236 QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG 295
             A ++FE MPER+ +SW +ML G ++ G ++DA  LF+ MP+  V +   M+ G+ + G
Sbjct: 222 NLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRG 281

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
            VD A+ +F++M +RD    +AM+  Y +N + M+AL  F  M     + P+  S++ +L
Sbjct: 282 MVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWR-GVRPNYPSVISIL 340

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
           +  A L  +D G  +H  + +  F ++     ALI MY KCG+++ A +VF   E   + 
Sbjct: 341 TVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIV 400

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            WN+MI G A HGLGE A  +  +M    + PD IT+ G L AC++ G VKEG   F  M
Sbjct: 401 MWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSM 460

Query: 476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNV 535
                + P  +HY CMVD+LGR+G +E A +LI++MP+EP+ VIW  L+ ACR + N  +
Sbjct: 461 TVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEI 520

Query: 536 GEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG 595
            E  AK L+ ++  N+  YVLLS+++  +G W DA ++R  +  RNL K PGCSWIE + 
Sbjct: 521 AEVAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDK 580

Query: 596 VVHEFFVRD 604
            VH F   D
Sbjct: 581 RVHLFTSGD 589



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/416 (26%), Positives = 199/416 (47%), Gaps = 56/416 (13%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRE-- 215
           N  I+   R G +E AR  F+ M +R + SYN+++ GY ++   ++A  LF  MP R+  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 216 -----------------------------RNLISWNSVLNGYAQLKSGLQFAWQIFEKMP 246
                                         +++S+ S+L GY +    L  A ++F++MP
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVR-HGLLADAIRLFQQMP 139

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
           ER+ +S+  +L G +  G++++A+ LFD+MP RDVV+W  M+ GY + GR+  AR LFDE
Sbjct: 140 ERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDE 199

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           MPKR+VV+  AM+ GY +NG    A ++F+ M        ++ S   +L    Q GH++ 
Sbjct: 200 MPKRNVVSWTAMISGYAQNGEVNLARKLFEVMP-----ERNEVSWTAMLVGYIQAGHVED 254

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDM----YSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
              +        F+   +H VA  +     + + G ++ A  VFE++ +     W+AMI 
Sbjct: 255 AAEL--------FNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIK 306

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
               +     A     EM    + P+  +   +L  CA   ++  G      M R    +
Sbjct: 307 AYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRC-SFD 365

Query: 483 PELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSACRNYENLNVGE 537
            ++     ++ +  + G+++ A+ +      EP D++ W ++++    Y    +GE
Sbjct: 366 MDVFAVSALITMYIKCGNLDKAKRVFHT--FEPKDIVMWNSMIT---GYAQHGLGE 416



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 170/394 (43%), Gaps = 61/394 (15%)

Query: 20  LLRKC-KTLNDVNQIHARMITTGFIKNTHL--TTKLVASFSSSPCTP------------L 64
           L RK  + + + N++    +  G+I+  H+    +L  +    P               +
Sbjct: 223 LARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGM 282

Query: 65  TEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL 124
            + A+ +F K    RE+ D   W+A+IK Y       EAL  F  ML  GV  +  S   
Sbjct: 283 VDAAKTVFEK---MRERDD-GTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVIS 338

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +L  C+ L +++ G ++H  + + +F  D+F  + LI++Y++CG L+ A+++F     +D
Sbjct: 339 ILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKD 398

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244
            V +NSMI GY + G  E A  +F  M +                   +G+         
Sbjct: 399 IVMWNSMITGYAQHGLGEQALGIFHDMRL-------------------AGMS-------- 431

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS-----WANMIDGYAKLGRVDI 299
               D I++   L  C   GK+ + + +F+ M     +      ++ M+D   + G V+ 
Sbjct: 432 ---PDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEE 488

Query: 300 ARRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
           A  L   MP + D V   A+MG   R   + +  E+      E  L P +A   ++LS I
Sbjct: 489 AFDLIKNMPVEPDAVIWGALMGA-CRMHRNAEIAEVAAKKLLE--LEPGNAGPYVLLSHI 545

Query: 359 -AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALID 391
              +G  +    + +++     +LN   G + I+
Sbjct: 546 YTSVGRWEDASKMRKFISSR--NLNKSPGCSWIE 577



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 146/360 (40%), Gaps = 57/360 (15%)

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
           N+ +    + G ++ A+A F+ MP R   S+  ++ GY +    D A  LF  MP RD+ 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 314 ACNAMMG---------------------------------GYVRNGYSMKALEIFDNMQC 340
           + NA++                                  GYVR+G    A+ +F  M  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMP- 139

Query: 341 ELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE 400
                 +  S  ++L  +   G +++     R L  +    +     A++  Y + G I 
Sbjct: 140 ----ERNHVSYTVLLGGLLDAGRVNEA----RRLFDEMPDRDVVAWTAMLSGYCQAGRIT 191

Query: 401 NAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460
            A  +F+++   +V  W AMI+G A +G   LA  L   M     E +++++T +L    
Sbjct: 192 EARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMP----ERNEVSWTAMLVGYI 247

Query: 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGC--MVDILGRAGHIEAARNLIEDMPMEPNDV 518
            AG V++    F  M       PE     C  M+   G+ G ++AA+ + E M  E +D 
Sbjct: 248 QAGHVEDAAELFNAM-------PEHPVAACNAMMVGFGQRGMVDAAKTVFEKM-RERDDG 299

Query: 519 IWRTLLSACRNYENLNVGEPVAKHLIGMD-SSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
            W  ++ A    E L       + ++      N  S + +  + A L + +  R V + M
Sbjct: 300 TWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAM 359


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 187/545 (34%), Positives = 305/545 (55%), Gaps = 5/545 (0%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   WN +I   S     +EAL M   M   GV  D  + +  L AC+RL  +E G Q
Sbjct: 253 ERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQ 312

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  + +     D ++ + ++ LY +CG  + A+++F  +  R+SVS+  +I G+++ G 
Sbjct: 313 LHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGC 372

Query: 201 IESARELFDSM-----PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
              + ELF+ M      + +  L +  S       +  G Q      +    R ++  NS
Sbjct: 373 FSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNS 432

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           ++    KCG + +A+ +F+ M +RD+VSW  MI  Y+++G +  AR  FD+M  R+V+  
Sbjct: 433 LISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITW 492

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           NAM+G Y+++G     L+++ +M  E  + PD  + V +    A +G    G  I  +  
Sbjct: 493 NAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTV 552

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           K    L+     A+I MYSKCG I  A K F+ +    +  WNAMI G + HG+G+ A +
Sbjct: 553 KVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIE 612

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           +  ++     +PD I++  +L+ C+H+GLV+EG   F++M+R H + P L+H+ CMVD+L
Sbjct: 613 IFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLL 672

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           GRAGH+  A+NLI++MPM+P   +W  LLSAC+ + N ++ E  AKHL  +DS  S  Y+
Sbjct: 673 GRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFDLDSPGSGGYM 732

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY 615
           LL+ M+A  G  +D+ +VR +M+++ +KK PG SW+E+   VH F   D S  QV  I  
Sbjct: 733 LLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNNRVHVFKAEDVSHPQVIAIRE 792

Query: 616 MLDNM 620
            LD +
Sbjct: 793 KLDEL 797



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 125/510 (24%), Positives = 229/510 (44%), Gaps = 48/510 (9%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV-DKFSASLVLKACSRLGLIEEGLQ 140
           +D   WN I+  Y        AL +F  M   G S+ + F+   V+K+C  LG  E  LQ
Sbjct: 121 RDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQ 180

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           + GLL K     D  +Q  L+ + VRCG ++FA + F ++     +  NSM+ GY KS  
Sbjct: 181 LLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHG 240

Query: 201 IESARELFDSMPIRERNLISWN---SVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
           ++ A E+F SMP  ER+++SWN   S L+   +++  L     +  K    D  ++ S L
Sbjct: 241 VDHALEIFKSMP--ERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSL 298

Query: 258 HGCVKCGKMDDAQAL----FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
             C +   ++  + L       +P  D    + M++ YAK G    A+R+F  +  R+ V
Sbjct: 299 TACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSV 358

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
           +   ++GG+++ G   +++E+F+ M+ EL +  D  +L  ++S       I  G  +H  
Sbjct: 359 SWTVLIGGFLQYGCFSESVELFNQMRAEL-MAVDQFALATLISGCCNTMDICLGSQLHSL 417

Query: 374 LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
             K   +       +LI MY+KCG+++NA  +F  + +  +  W  MI   +  G    A
Sbjct: 418 CLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKA 477

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493
            +   +M   ++    IT+  +L A    G  ++GL  +                     
Sbjct: 478 REFFDDMSTRNV----ITWNAMLGAYIQHGAEEDGLKMYS-------------------- 513

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS 553
                       +++ +  + P+ V + TL   C +     +G+ +  H + +     +S
Sbjct: 514 ------------DMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTS 561

Query: 554 YV-LLSNMFAGLGMWNDARRVRSMMKERNL 582
            V  +  M++  G  ++AR+    +  ++L
Sbjct: 562 VVNAVITMYSKCGRISEARKAFDFLSRKDL 591



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 109/478 (22%), Positives = 196/478 (41%), Gaps = 88/478 (18%)

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFAR----------- 174
           L++C     +     +H  L  V   S +FLQN L+  Y+ CG L  AR           
Sbjct: 32  LRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEPN 91

Query: 175 ---------------------QLFDKMGIRDSVSYNSMIDGYVKSGNIESARELF----- 208
                                +LF +M  RD  S+N+++ GY +SG   +A ++F     
Sbjct: 92  VITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQ 151

Query: 209 --DSMPIRERNLISWNSVLNGYAQL---KSGLQFAWQIFEKMPERDLISWNSMLHGCVKC 263
             DS+P    N  ++  V+     L   +  LQ    + +   + D     +++   V+C
Sbjct: 152 TGDSLP----NAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRC 207

Query: 264 GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV 323
           G MD A   F ++    ++   +M+ GYAK   VD A  +F  MP+RDVV+ N ++    
Sbjct: 208 GAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALS 267

Query: 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG 383
           ++G   +AL++  +M  +  + PD  +    L+A A+L  ++ G  +H  + ++   ++ 
Sbjct: 268 KSGRVREALDMVVDMHGK-GVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDP 326

Query: 384 KHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
               A++++Y+KCG  + A +VF  + D +   W  +I G   +G    + +L  +M   
Sbjct: 327 YVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAE 386

Query: 444 SIEPDDITFTGLLNAC-----------------------------------AHAGLVKEG 468
            +  D      L++ C                                   A  G ++  
Sbjct: 387 LMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNA 446

Query: 469 LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
            L F  M      E ++  +  M+    + G+I  AR   +DM    N + W  +L A
Sbjct: 447 ELIFNFMA-----ERDIVSWTGMITAYSQVGNIAKAREFFDDMSTR-NVITWNAMLGA 498



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 182/405 (44%), Gaps = 76/405 (18%)

Query: 254 NSMLHGCVKCGKMDDAQALF-DKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
           N++LH  + CG + DA+ L  D++ + +V++   M++GYAKLG +  A  LF  MP RDV
Sbjct: 64  NTLLHAYLSCGALSDARNLLRDEITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDV 123

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
            + N +M GY ++G  + AL+IF +M+      P+  +   V+ +   LG  +  + +  
Sbjct: 124 ASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLG 183

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS----------------VDH 416
            L K     +     AL+DM  +CG+++ A K F +I++ +                VDH
Sbjct: 184 LLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDH 243

Query: 417 ---------------WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461
                          WN +I+ L+  G    A D++++M    + PD  T+T  L ACA 
Sbjct: 244 ALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACAR 303

Query: 462 AGLVKEG-LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIW 520
              ++ G  L  +++R +  ++P +     MV++  + G  + A+ +   +  + N V W
Sbjct: 304 LSSLEWGKQLHVQVIRNLPHIDPYVA--SAMVELYAKCGCFKEAKRVFSSL-RDRNSVSW 360

Query: 521 R-----------------------------------TLLSACRNYENLNVGEPVAKHLIG 545
                                               TL+S C N  ++ +G  +  H + 
Sbjct: 361 TVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQL--HSLC 418

Query: 546 MDSSNSSSYVL---LSNMFAGLGMWNDARRVRSMMKERNLKKLPG 587
           + S ++ + V+   L +M+A  G   +A  + + M ER++    G
Sbjct: 419 LKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTG 463



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 19/188 (10%)

Query: 31  NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAI 90
           +QI    +  G I +T +   ++  +S   C  ++E AR  F     F  +KD   WNA+
Sbjct: 545 DQIIGHTVKVGLILDTSVVNAVITMYSK--CGRISE-ARKAF----DFLSRKDLVSWNAM 597

Query: 91  IKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRK-- 147
           I  YS HG+  K+A+ +F  +L+ G   D  S   VL  CS  GL+EEG     ++++  
Sbjct: 598 ITGYSQHGMG-KQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDH 656

Query: 148 -VAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS-YNSMIDGYVKSGNIE--- 202
            ++ G + F  +C++ L  R G+L  A+ L D+M ++ +   + +++      GN +   
Sbjct: 657 NISPGLEHF--SCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAE 714

Query: 203 -SARELFD 209
            +A+ LFD
Sbjct: 715 LAAKHLFD 722


>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Glycine max]
          Length = 581

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 184/498 (36%), Positives = 289/498 (58%), Gaps = 36/498 (7%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN 217
             +++ Y++   ++ A +LF +M +R+ VS+N+M+DGY ++G  + A +LF  MP  ERN
Sbjct: 68  TAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMP--ERN 125

Query: 218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP 277
           ++SWN+++    Q    ++ A ++F++M +RD++SW +M+ G  K G+++DA+ALFD+MP
Sbjct: 126 VVSWNTIITALVQCGR-IEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMP 184

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD-------------------------- 311
            R+VVSW  MI GYA+  R+D A +LF  MP+RD                          
Sbjct: 185 VRNVVSWNAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGE 244

Query: 312 -----VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
                V+   AMM GYV++G S +AL +F  M     L P+  + V VL A + L  + +
Sbjct: 245 MQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTE 304

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ--IEDGSVDHWNAMINGL 424
           G  IH+ + K  F  +     ALI+MYSKCG +  A K+F+   +    +  WN MI   
Sbjct: 305 GQQIHQMISKTVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAAY 364

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
           A HG G+ A +L  EM+ L +  +D+TF GLL AC+H GLV+EG   F+ + +   ++  
Sbjct: 365 AHHGYGKEAINLFNEMQELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNRSIQLR 424

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
             HY C+VD+ GRAG ++ A N+IE +  E    +W  LL+ C  + N ++G+ VA+ ++
Sbjct: 425 EDHYACLVDLCGRAGRLKEASNIIEGLGEEVPLTVWGALLAGCNVHGNADIGKLVAEKIL 484

Query: 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
            ++  N+ +Y LLSNM+A +G W +A  VR  MK+  LKK PGCSWIE+   V  F V D
Sbjct: 485 KIEPQNAGTYSLLSNMYASVGKWKEAANVRMRMKDMGLKKQPGCSWIEVGNTVQVFVVGD 544

Query: 605 KSRLQVRDIYYMLDNMWT 622
           K   Q   + ++L ++ T
Sbjct: 545 KPHSQYEPLGHLLHDLHT 562



 Score =  208 bits (530), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 126/384 (32%), Positives = 213/384 (55%), Gaps = 61/384 (15%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS-VSYNSMIDGYVKSGNIESARELFDSM 211
           D+ L   +I+ Y++CG +  AR+LFD+   + + V++ +M++GY+K   ++ A  LF  M
Sbjct: 31  DIGLWTTMITGYLKCGMIREARKLFDRWDAKKNVVTWTAMVNGYIKFNQVKEAERLFYEM 90

Query: 212 PIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQ 270
           P+  RN++SWN++++GYA  ++GL Q A  +F +MPER+++SWN+++   V+CG+++DAQ
Sbjct: 91  PL--RNVVSWNTMVDGYA--RNGLTQQALDLFRRMPERNVVSWNTIITALVQCGRIEDAQ 146

Query: 271 ALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMK 330
            LFD+M  RDVVSW  M+ G AK GRV+ AR LFD+MP R+VV+ NAM+ GY +N    +
Sbjct: 147 RLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPVRNVVSWNAMITGYAQNRRLDE 206

Query: 331 ALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI 390
           AL++F  M                                    E+D  S N      +I
Sbjct: 207 ALQLFQRMP-----------------------------------ERDMPSWN-----TMI 226

Query: 391 DMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS-IEPDD 449
             + + G +  A K+F ++++ +V  W AM+ G   HGL E A  + ++M   + ++P+ 
Sbjct: 227 TGFIQNGELNRAEKLFGEMQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNT 286

Query: 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKL--EPELQHYGCMVDIL----GRAGHIEA 503
            TF  +L AC+    + EG       ++IH++  +   Q   C+V  L     + G +  
Sbjct: 287 GTFVTVLGACSDLAGLTEG-------QQIHQMISKTVFQDSTCVVSALINMYSKCGELHT 339

Query: 504 ARNLIEDMPMEPNDVI-WRTLLSA 526
           AR + +D  +   D+I W  +++A
Sbjct: 340 ARKMFDDGLLSQRDLISWNGMIAA 363



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 212/429 (49%), Gaps = 63/429 (14%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           WN ++  Y+     ++AL +F  M +  V     S + ++ A  + G IE+  ++   ++
Sbjct: 98  WNTMVDGYARNGLTQQALDLFRRMPERNV----VSWNTIITALVQCGRIEDAQRLFDQMK 153

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
                 D+     +++   + G +E AR LFD+M +R+ VS+N+MI GY ++  ++ A +
Sbjct: 154 D----RDVVSWTTMVAGLAKNGRVEDARALFDQMPVRNVVSWNAMITGYAQNRRLDEALQ 209

Query: 207 LFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKM 266
           LF  MP  ER++ SWN+++ G+ Q    L  A ++F +M E+++I+W +M+ G V+ G  
Sbjct: 210 LFQRMP--ERDMPSWNTMITGFIQ-NGELNRAEKLFGEMQEKNVITWTAMMTGYVQHGLS 266

Query: 267 DDAQALFDKMPKRD------------------------------------------VVSW 284
           ++A  +F KM   +                                          VVS 
Sbjct: 267 EEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQMISKTVFQDSTCVVS- 325

Query: 285 ANMIDGYAKLGRVDIARRLFDE--MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
             +I+ Y+K G +  AR++FD+  + +RD+++ N M+  Y  +GY  +A+ +F+ MQ EL
Sbjct: 326 -ALINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAINLFNEMQ-EL 383

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVA-IHRYLEKDQFSLNGKHGVALIDMYSKCGSIEN 401
            +  +D + V +L+A +  G +++G       L+     L   H   L+D+  + G ++ 
Sbjct: 384 GVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNRSIQLREDHYACLVDLCGRAGRLKE 443

Query: 402 AIKVFEQI-EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI-TFTGLLNAC 459
           A  + E + E+  +  W A++ G  +HG  ++    L+  + L IEP +  T++ L N  
Sbjct: 444 ASNIIEGLGEEVPLTVWGALLAGCNVHGNADIG--KLVAEKILKIEPQNAGTYSLLSNMY 501

Query: 460 AHAGLVKEG 468
           A  G  KE 
Sbjct: 502 ASVGKWKEA 510



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 74/136 (54%), Gaps = 5/136 (3%)

Query: 80  EKKDPFLWNAIIKTY-SHGLDPKEALVMFCLML-DNGVSVDKFSASLVLKACSRLGLIEE 137
           ++K+   W A++  Y  HGL  +EAL +F  ML  N +  +  +   VL ACS L  + E
Sbjct: 246 QEKNVITWTAMMTGYVQHGL-SEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTE 304

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK--MGIRDSVSYNSMIDGY 195
           G QIH ++ K  F     + + LI++Y +CG L  AR++FD   +  RD +S+N MI  Y
Sbjct: 305 GQQIHQMISKTVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAAY 364

Query: 196 VKSGNIESARELFDSM 211
              G  + A  LF+ M
Sbjct: 365 AHHGYGKEAINLFNEM 380


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 217/710 (30%), Positives = 357/710 (50%), Gaps = 115/710 (16%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF--FKYHAF 78
           LR CKTLN + Q+H ++   G  +     TKLV + +        ++AR  F  FK    
Sbjct: 32  LRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFK-EDV 90

Query: 79  REKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
           R     F+ N++I+ YS     +EA++++  ML  GV+ + ++   VL  C+++    EG
Sbjct: 91  RSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEG 150

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVR--------------------------CGYLEF 172
           +Q+HG + K+    D+F+QNCLI  Y                            CGY   
Sbjct: 151 IQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARG 210

Query: 173 AR-----QLFDKM---GIRDS------------------------------------VSY 188
            R      LF +M   GIR S                                    V  
Sbjct: 211 DRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMV 270

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKM 245
           N+++D Y+K G I++A+ LFD     +RNL+ +N++L+ YA+    +  L    ++ ++ 
Sbjct: 271 NALVDMYMKCGAIDAAKRLFDE--CVDRNLVLYNTILSNYARQGLAREALAILDEMLQQG 328

Query: 246 PERDLIS---------------WNSMLHGCV--------------------KCGKMDDAQ 270
           P  D ++               +  + HG V                    KCGK + A 
Sbjct: 329 PRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMAC 388

Query: 271 ALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMK 330
            +FD M  + VVSW ++  G+ + G V+ A  +F+++P+R+ V  N M+ G V+      
Sbjct: 389 RVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFED 448

Query: 331 ALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI 390
           A+E+F  MQ E  +  D  +++ + SA   LG  +    +H Y+EK+    + +   AL+
Sbjct: 449 AIELFREMQGE-GIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALV 507

Query: 391 DMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
           DM+++CG  ++A++VF ++ +  V  W A I  +A+ G GE A  L  +M    ++PD +
Sbjct: 508 DMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVV 567

Query: 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIED 510
            F  +L AC+H G V++GL  F LM   H + P+++HYGCMVD+LGRAG +  A +LI+ 
Sbjct: 568 LFVQVLTACSHGGQVEQGLHIFSLMED-HGISPQIEHYGCMVDLLGRAGLLREAFDLIKS 626

Query: 511 MPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDA 570
           MPMEPNDV+W +LL+ACR ++N+ +    A+ +  +    +  +VLLSN++A  G W D 
Sbjct: 627 MPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDV 686

Query: 571 RRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            RVR  ++E+ ++K+PG S +++ GV+HEF   D+S  ++  I  ML  M
Sbjct: 687 ARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEM 736


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 211/670 (31%), Positives = 348/670 (51%), Gaps = 89/670 (13%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF---------------FKYHA 77
           +HA MI +GF    H+  +L+  +S S       +ARY+F                 Y A
Sbjct: 35  VHAHMIASGFQPRGHILNRLIDIYSKSS---KLNYARYLFDEIPQPDIVARTTLIAAYSA 91

Query: 78  FREKK--------------DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSAS 123
             + K              D   +NA+I  YSH  D   A+ +FC M  +    D ++ +
Sbjct: 92  AGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFT 151

Query: 124 LVLKACSRLGLIEEGLQ-IHGLLRKVAFGSDLFLQNCLISLYVRCGY---------LEFA 173
            VL A + +   E+  Q +H  + K   G    + N LIS YV+C           +  A
Sbjct: 152 SVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEA 211

Query: 174 RQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKS 233
           R+LFD+M  RD +S+ ++I GYVK+ ++++A+E  +     ++  ++WN++++GYA    
Sbjct: 212 RKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNG--TSKKLGVAWNAMISGYAHRGL 269

Query: 234 GLQFAWQIFEKMP----ERDLISWNSMLHGCV---------------------------- 261
            L+ A+++F KM     + D  ++ S++  C                             
Sbjct: 270 YLE-AFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAM 328

Query: 262 -----------KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
                      KCGK+D AQ +F+KMP+RD+VSW  ++ GY  +  +D A+  F+EMP++
Sbjct: 329 PVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEK 388

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
           ++++   M+ G  + G++ +AL+ F+ M+ + +  P D +    + + + LG +  G  +
Sbjct: 389 NILSWIIMISGLAQIGFAEEALKFFNRMKLQGF-EPCDYAFAGAIISCSVLGSLKHGRQL 447

Query: 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
           H  + +  +  +   G ALI MY++CG ++ A  +F  +       WNAMI  L  HG G
Sbjct: 448 HAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQG 507

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
             A +L  EM +  I PD I+F  +++AC+HAGLVKEG   F+ M  ++ + P+ +HY  
Sbjct: 508 TQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYAR 567

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           ++D+L RAG    A+ ++E MP EP   IW  LL+ CR + N+++G   A+ L  +   +
Sbjct: 568 IIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQH 627

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQV 610
             +YVLLSNM+A  G WND  +VR +M++R +KK PGCSWIE+E  VH F V D +  +V
Sbjct: 628 DGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHPEV 687

Query: 611 RDIYYMLDNM 620
           R IY  L+ +
Sbjct: 688 RQIYNYLEQL 697



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 100/252 (39%), Gaps = 56/252 (22%)

Query: 9   QPCNSTQSTLLLLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLT 65
           +PC+   +  ++   C  L  +    Q+HA+++  G+  +      L+  ++      + 
Sbjct: 422 EPCDYAFAGAII--SCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYAR---CGVV 476

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
           + A  +F          D   WNA+I          +A+ +F  ML  G+  D+ S   V
Sbjct: 477 DAAHCLFINMPCV----DAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTV 532

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM----G 181
           + ACS  GL++EG                                   R+ FD M    G
Sbjct: 533 ISACSHAGLVKEG-----------------------------------RKYFDSMHNVYG 557

Query: 182 IR-DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNG---YAQLKSGLQF 237
           +  D   Y  +ID   ++G    A+E+ +SMP      I W ++L G   +  +  G++ 
Sbjct: 558 VNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPI-WEALLAGCRIHGNIDLGIEA 616

Query: 238 AWQIFEKMPERD 249
           A ++FE  P+ D
Sbjct: 617 AERLFELKPQHD 628


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 209/651 (32%), Positives = 359/651 (55%), Gaps = 57/651 (8%)

Query: 20   LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
            LL++C   +   QIH+++I TG  ++  L  ++V+ ++      L   A+ +F +     
Sbjct: 878  LLQQCSKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAG---FGLVSDAQRVF-EVSPIE 933

Query: 80   EKKDPFLWNAIIKT-YSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
               +  LWN+I++   +HG   +EAL ++C M   GVS D F+  LV++AC+ +G  +  
Sbjct: 934  CFSNLLLWNSILRANVAHGY-CEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLC 992

Query: 139  LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
              +HG + ++ F  +L + N L+ +Y + G ++ AR++F++M +R  VS+N+M+ GY  +
Sbjct: 993  RSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALN 1052

Query: 199  GNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER-------- 248
             +   A E+F  M     E NL++W S+L+ +A+    ++   ++F +M  R        
Sbjct: 1053 YDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVE-TMELFGRMRMRGIGATAEA 1111

Query: 249  ---------DLISWNS--MLHGCV--------------------KCGKMDDAQALFDKMP 277
                     DL +++   ++HG V                    K G ++ A+ LF ++ 
Sbjct: 1112 LAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIK 1171

Query: 278  KRDVVSWANMIDGYAKLGRVDIARRLF------DEMP--KRDVVACNAMMGGYVRNGYSM 329
             +++VSW  +I  YA LG  D A  +F      DE P  + +VV+ +A++GG+   G   
Sbjct: 1172 TKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGE 1231

Query: 330  KALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVAL 389
            +ALE+F  MQ    +  +  ++  VLS  A+L  +  G  IH ++ +     N   G  L
Sbjct: 1232 EALELFRRMQLA-KVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGL 1290

Query: 390  IDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD 449
            I+MY+K GS +    VFE+IE+  +  WN M+ G  IHGLGE A     +M +   EPD 
Sbjct: 1291 INMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDG 1350

Query: 450  ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE 509
            +TF  +L+AC+HAGLV EG   F+ M +  ++EP+++HY CMVD+LGRAG ++ A  +++
Sbjct: 1351 VTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVK 1410

Query: 510  DMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWND 569
             MP+EPN  +W  LL++CR ++N  V E  A  +  ++S  + SY+LLSN++A  G W D
Sbjct: 1411 SMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWED 1470

Query: 570  ARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            + +VR   K + LKK PG SWI+++  V+ F   +    ++ ++Y +L ++
Sbjct: 1471 SAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELEEVYRILKDL 1521


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 197/575 (34%), Positives = 326/575 (56%), Gaps = 27/575 (4%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMF-----------CLMLDNGVSVDKFSASL-VLKAC 129
           KD   WN+++  Y+   + +  L  F            LM+D  V V   ++S    +  
Sbjct: 169 KDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKI 228

Query: 130 SRLGLIEEGLQIHGLLR--KVAFGSDLFLQ---------NCLISLYVRCGYLEFARQLFD 178
                +     + G  R  K+A    LF Q         N +I+ YV+  +++ A  LF 
Sbjct: 229 PNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFM 288

Query: 179 KMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFA 238
           +M  ++S+S+ ++I+GYV+ G ++ AR+L + MP R  N+ +  ++++GY Q K  +  A
Sbjct: 289 EMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYR--NVAAQTAMISGYVQNKR-MDDA 345

Query: 239 WQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVD 298
            QIF ++  RD++ WN+M+ G  +CG+MD+A  LF +M K+D+VSW  M+  YA++G++D
Sbjct: 346 RQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMD 405

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
            A ++F+EM ++++V+ N+++ G  +NG  + AL+ F  M  E    PD ++    LS+ 
Sbjct: 406 AAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQ-KPDQSTFACGLSSC 464

Query: 359 AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWN 418
           A L  +  G  +H+ + K  ++ +     ALI MY+KCGSI +A  +F+ I+   V  WN
Sbjct: 465 AHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWN 524

Query: 419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRI 478
           ++I   A++G G  A  L  +ME   + PD++TF G+L+AC+H GL+ +GL  F+ M + 
Sbjct: 525 SLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQA 584

Query: 479 HKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEP 538
           + +EP  +HY CMVD+LGRAG +E A  L+  M +  N  IW  LL ACR + NL + + 
Sbjct: 585 YNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKF 644

Query: 539 VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVH 598
            A+ L+  +   +S+YVLLSNM A  G W++  RVR +MKE+  +K PG SWIEL+  VH
Sbjct: 645 AAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVH 704

Query: 599 EFFVRDKSRLQVRDIYYMLDNMWTPDSVATSCTHY 633
            F   D +  +  ++ ++L ++         C  Y
Sbjct: 705 AFLSEDPAHPRAVELCHILRSLTAHMRNTAKCPPY 739



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 132/473 (27%), Positives = 246/473 (52%), Gaps = 56/473 (11%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           WN++I  Y H    +EA  +F    D   + D +S +L++   +R G + +   +  LL 
Sbjct: 80  WNSMIAAYLHNDRVEEARQLF----DKMPTRDLYSWTLMITCYTRNGELAKARNLFNLL- 134

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
              +  +    N +++ Y +    + AR+LFD M  +D VS+NSM+ GY ++G +    +
Sbjct: 135 --PYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQ 192

Query: 207 LFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKM 266
            F+ M   ER+++SWN +++G+ ++   L  +W+ FEK+P  + +SW +ML G  + GK+
Sbjct: 193 FFEEMA--ERDVVSWNLMVDGFVEV-GDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKI 249

Query: 267 DDAQALFDKMPKRDVV-------------------------------SWANMIDGYAKLG 295
            +A+ LFD+MP R+VV                               SW  +I+GY ++G
Sbjct: 250 AEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMG 309

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
           ++D AR+L ++MP R+V A  AM+ GYV+N     A +IF+ +        D      ++
Sbjct: 310 KLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIR-----DVVCWNTMI 364

Query: 356 SAIAQLGHIDKGVAIHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
           +  +Q G +D+ + + + + +KD  S N      ++  Y++ G ++ AIK+FE++++ ++
Sbjct: 365 AGYSQCGRMDEALHLFKQMVKKDIVSWN-----TMVASYAQVGQMDAAIKIFEEMKEKNI 419

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
             WN++I+GL  +G    A    M M     +PD  TF   L++CAH   ++ G    +L
Sbjct: 420 VSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQL 479

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSA 526
           + +      +L     ++ +  + G I +A  L +D  ++  DV+ W +L++A
Sbjct: 480 VMK-SGYATDLFVSNALITMYAKCGSISSAELLFKD--IDHFDVVSWNSLIAA 529



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 151/590 (25%), Positives = 264/590 (44%), Gaps = 111/590 (18%)

Query: 120 FSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK 179
           F  +L +    + G I+E +++   +       +    N +IS + + G +  ARQLFD 
Sbjct: 16  FRHNLKITQLGKSGQIDEAIKVFQHMTH----KNTVTHNSMISAFAKNGRISDARQLFDG 71

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRE--------------------RNLI 219
           M  R+ VS+NSMI  Y+ +  +E AR+LFD MP R+                    RNL 
Sbjct: 72  MPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLF 131

Query: 220 S-----WNSV------------------------------------LNGY---AQLKSGL 235
           +     WN V                                    L GY    +++ GL
Sbjct: 132 NLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGL 191

Query: 236 QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG 295
           QF    FE+M ERD++SWN M+ G V+ G ++ +   F+K+P  + VSW  M+ G+A+ G
Sbjct: 192 QF----FEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFG 247

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
           ++  ARRLFD+MP R+VVA NAM+  YV+N +  +A+ +F  M        +  S   V+
Sbjct: 248 KIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMP-----EKNSISWTTVI 302

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
           +   ++G +D+     R L       N     A+I  Y +   +++A ++F QI    V 
Sbjct: 303 NGYVRMGKLDEA----RQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVV 358

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            WN MI G +  G  + A  L  +M    ++ D +++  ++ + A  G +   +  FE M
Sbjct: 359 CWNTMIAGYSQCGRMDEALHLFKQM----VKKDIVSWNTMVASYAQVGQMDAAIKIFEEM 414

Query: 476 RRIHKLEPELQHYGCMVDILGRAG-HIEAARN--LIEDMPMEPNDVIWRTLLSACRNYEN 532
           +     E  +  +  ++  L + G +++A ++  L+     +P+   +   LS+C +   
Sbjct: 415 K-----EKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAA 469

Query: 533 LNVGEPVAKHLIGMDSSNSSSYVL---LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCS 589
           L VG+ +  H + M S  ++   +   L  M+A  G  + A      +  +++      S
Sbjct: 470 LQVGKQL--HQLVMKSGYATDLFVSNALITMYAKCGSISSAE-----LLFKDIDHFDVVS 522

Query: 590 WIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVA-----TSCTHYG 634
           W  L   +  + +    R  ++  + M      PD V      ++C+H G
Sbjct: 523 WNSL---IAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVG 569



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 221/433 (51%), Gaps = 26/433 (6%)

Query: 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDS 210
           GS +F  N  I+   + G ++ A ++F  M  +++V++NSMI  + K+G I  AR+LFD 
Sbjct: 12  GSYVFRHNLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDG 71

Query: 211 MPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQ 270
           MP  +RN++SWNS++  Y      ++ A Q+F+KMP RDL SW  M+    + G++  A+
Sbjct: 72  MP--QRNIVSWNSMIAAYLH-NDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKAR 128

Query: 271 ALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSM 329
            LF+ +P K + V    M+ GYAK  + D ARRLFD MP +D+V+ N+M+ GY RNG   
Sbjct: 129 NLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMR 188

Query: 330 KALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVAL 389
             L+ F+ M        D  S  +++    ++G ++       + EK   + N    V +
Sbjct: 189 LGLQFFEEMA-----ERDVVSWNLMVDGFVEVGDLNSS---WEFFEKIP-NPNTVSWVTM 239

Query: 390 IDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD 449
           +  +++ G I  A ++F+Q+   +V  WNAMI     +   + A  L MEM     E + 
Sbjct: 240 LCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMP----EKNS 295

Query: 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE 509
           I++T ++N     G + E     +L+ ++       Q    M+    +   ++ AR +  
Sbjct: 296 ISWTTVINGYVRMGKLDEAR---QLLNQMPYRNVAAQ--TAMISGYVQNKRMDDARQIFN 350

Query: 510 DMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWND 569
            + +  + V W T+++       ++    + K ++  D  + ++ V     +A +G  + 
Sbjct: 351 QISIR-DVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVA---SYAQVGQMDA 406

Query: 570 ARRVRSMMKERNL 582
           A ++   MKE+N+
Sbjct: 407 AIKIFEEMKEKNI 419



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 133/310 (42%), Gaps = 52/310 (16%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           ++K+   WN++I   +      +AL  F LM   G   D+ + +  L +C+ L  ++ G 
Sbjct: 415 KEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGK 474

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           Q+H L+ K  + +DLF+ N LI++Y +CG +  A  LF  +   D VS+NS+I  Y  +G
Sbjct: 475 QLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNG 534

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
           N   A +LF  M +             G A                   D +++  +L  
Sbjct: 535 NGREALKLFHKMEVE------------GVAP------------------DEVTFVGILSA 564

Query: 260 CVKCGKMDDAQALFDKMPKRDVVS-----WANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
           C   G +D    LF  M +   +      +A M+D   + GR++ A +L   M       
Sbjct: 565 CSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMK------ 618

Query: 315 CNAMMGGYVRNGYSMKALEIFDNMQCE-------LYLHPDDASLVIVLSAI-AQLGHIDK 366
            NA  G +   G  + A  I  N++         L   P   S  ++LS + A+ G  D+
Sbjct: 619 INANAGIW---GALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDE 675

Query: 367 GVAIHRYLEK 376
              + R +++
Sbjct: 676 VARVRRLMKE 685


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 194/472 (41%), Positives = 291/472 (61%), Gaps = 22/472 (4%)

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR---ERNLISWNSVLN 226
           L++AR++F  M   +  SYN++I    +S +   A  +F  M      E N  ++ SV  
Sbjct: 61  LDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFK 120

Query: 227 --GYAQ-LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALF---------- 273
             G A+ L+ G Q      +   + D    ++++   + CG M+DA  LF          
Sbjct: 121 ACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCD 180

Query: 274 ---DKMPK--RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYS 328
              DK  +   DVV W  MIDGY ++G +++AR LFDEMP+R VV+ N M+ GY ++G+ 
Sbjct: 181 GIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHF 240

Query: 329 MKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVA 388
            +A+E+F  MQ    + P+  +LV VL A+++LG ++ G  +H Y  ++   ++   G A
Sbjct: 241 KEAVEVFREMQMA-EVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSA 299

Query: 389 LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD 448
           LIDMY+KCGSIE A++VFE +   +V  W+ +I GLA+HG  +   D   +MER  + P 
Sbjct: 300 LIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPS 359

Query: 449 DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLI 508
           D+T+ GLL+AC+HAGLV EG   F+ M R+  LEP ++HYGCMVD+LGRAG +E +  LI
Sbjct: 360 DVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELI 419

Query: 509 EDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWN 568
            +MP++P+DVIW+ LL AC+ + N+ +G+ VA+HL+ +   +S SYV LSN++A LG W 
Sbjct: 420 LNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWE 479

Query: 569 DARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
              +VR MMKE +++K PGCSWIEL+GV+HEF V D S  + + I+ ML  M
Sbjct: 480 GVAKVRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEM 531



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 131/497 (26%), Positives = 211/497 (42%), Gaps = 122/497 (24%)

Query: 24  CKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKD 83
           CKT+ D+ Q+HA+MI T  I++     +L+  FS+       ++AR IF   H    + +
Sbjct: 21  CKTMQDLKQLHAQMIKTAQIRDPLAAAELL-RFSAVSDHRDLDYARKIFRSMH----RPN 75

Query: 84  PFLWNAIIKTYSHGLDPKEALVMFCLML-DNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
            F +N +I+  S   DP +AL++F  M+ D  V  + F+   V KAC R   + EG Q+H
Sbjct: 76  CFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVH 135

Query: 143 GLLRKVAFGSDLF----------------------------------------------L 156
           GL  K    SD F                                              L
Sbjct: 136 GLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVL 195

Query: 157 QNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRE- 215
            N +I  YVR G LE AR LFD+M  R  VS+N MI GY +SG+ + A E+F  M + E 
Sbjct: 196 WNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEV 255

Query: 216 -RNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER---DLISWNSMLHGCVKCGKMDDAQA 271
             N ++  SVL   ++L +     W     +      D +  ++++    KCG ++ A  
Sbjct: 256 PPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQ 315

Query: 272 LFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKA 331
           +F+ +PKR+VV+W+ +I G A  GR       F++M +  V+                  
Sbjct: 316 VFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVM------------------ 357

Query: 332 LEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALID 391
                         P D + + +LSA +  G +++G    R+       ++G        
Sbjct: 358 --------------PSDVTYIGLLSACSHAGLVNEG----RWFFDHMVRVSGL------- 392

Query: 392 MYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDIT 451
                              +  ++H+  M++ L   GL E + +L++ M    I+PDD+ 
Sbjct: 393 -------------------EPRIEHYGCMVDLLGRAGLLEESEELILNM---PIKPDDVI 430

Query: 452 FTGLLNACAHAGLVKEG 468
           +  LL AC   G V+ G
Sbjct: 431 WKALLGACKMHGNVEMG 447


>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 185/500 (37%), Positives = 288/500 (57%), Gaps = 13/500 (2%)

Query: 125 VLKACSRLGLIEEGLQIHG-LLRKVAFGSDLFLQNCLISLYVRCGY--LEFARQLFDKMG 181
           +L+ CS +G ++   QIHG LL+K      L +   L++ Y    +  L +AR +FD++ 
Sbjct: 17  LLERCSNIGELK---QIHGQLLKKGTIRHKLTVSR-LLTTYASMEFSNLTYARMVFDRIS 72

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSM-----PIRERNLISWNSVLNGYAQLKSGLQ 236
             ++V +N+MI  Y  S + E A  L+  M     P             +  + L    Q
Sbjct: 73  SPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQ 132

Query: 237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR 296
              QI ++    ++ + NS+L      G +  A  LFD +P RD+VSW  MIDGY K G 
Sbjct: 133 IHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGN 192

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           V++A ++F  MP+++V++  +M+ G+VR G   +AL +   M     + PD  +L   LS
Sbjct: 193 VEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVA-GIKPDKITLSCSLS 251

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
           A A LG +++G  IH Y+ K++  ++   G ALIDMY KCG ++ A+ VF ++E   V  
Sbjct: 252 ACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYT 311

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           W A+I G A+HG G  A D   +M++  I+P   TFT +L AC+H GLV+EG   FE M 
Sbjct: 312 WTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMS 371

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
             + ++P ++HYGCMVD+LGRAG ++ A+  +E MP++PN  IW +LL+AC  +++L +G
Sbjct: 372 TFYNMKPVMEHYGCMVDLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLNACHLHKHLELG 431

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
           + + K LI +D  +   Y+ L+++ A  G W++A +VRS +K + L  LPGCS I L GV
Sbjct: 432 KEIGKFLIELDPEHDGRYIHLASIHAAAGEWDEASQVRSHIKNKGLLNLPGCSTITLNGV 491

Query: 597 VHEFFVRDKSRLQVRDIYYM 616
            HEFF   +    VR++Y M
Sbjct: 492 AHEFFAGAEPHPHVREMYDM 511



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/436 (28%), Positives = 229/436 (52%), Gaps = 23/436 (5%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           + + T+ LL +C  + ++ QIH +++  G I++    ++L+ +++S   + LT +AR +F
Sbjct: 10  NVEQTMSLLERCSNIGELKQIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLT-YARMVF 68

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL 132
            +        +  +WN +I+ YS+  DP+EAL+++  ML + +  + ++   +LKACS L
Sbjct: 69  DRI----SSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSAL 124

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
             + E  QIH  + K  FGS+++  N L+ +Y   G ++ A  LFD +  RD VS+N+MI
Sbjct: 125 SALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMI 184

Query: 193 DGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQL---KSGLQFAWQIFEKMPERD 249
           DGY+K GN+E A ++F +MP  E+N+ISW S++ G+ +    K  L    Q+     + D
Sbjct: 185 DGYIKCGNVEMAYKIFQAMP--EKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPD 242

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFD 305
            I+ +  L  C   G ++  + +   + K     D V    +ID Y K G +  A  +F 
Sbjct: 243 KITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFS 302

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
           ++ K+ V    A++GG+  +G   +AL+ F  MQ +  + P   +   VL+A +  G ++
Sbjct: 303 KLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQ-KAGIKPTSFTFTAVLTACSHTGLVE 361

Query: 366 KGVAIHRYLEKDQFSLNGK----HGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAM 420
           +G ++    E      N K    H   ++D+  + G ++ A +  E +    +   W ++
Sbjct: 362 EGKSL---FESMSTFYNMKPVMEHYGCMVDLLGRAGFLKEAKEFVESMPIKPNAAIWGSL 418

Query: 421 INGLAIHGLGELAFDL 436
           +N   +H   EL  ++
Sbjct: 419 LNACHLHKHLELGKEI 434


>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 827

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 193/578 (33%), Positives = 316/578 (54%), Gaps = 46/578 (7%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           W+A+I  +S      E++ +F  M+  GV+ D  + + VL ACSR+  +  G ++HG + 
Sbjct: 238 WSAVIGGFSSNAYDVESVELFARMVGAGVAPDARTLASVLPACSRMKWLFVGKELHGYIV 297

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           +    S+ F+ N L+ +Y RCG ++ A ++F K   + + SYN+MI GY+++GN+  A+E
Sbjct: 298 RHELFSNGFVANALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGYLENGNVGKAKE 357

Query: 207 LFDSMPIR--ERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHG-- 259
           LF  M     ER+ ISWN +++G+         L     +  +  E D  +  S+L G  
Sbjct: 358 LFYQMEQEGVERDRISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFA 417

Query: 260 ---CV------------------------------KCGKMDDAQALFDKMPKRDVVSWAN 286
              C+                              KC  +  AQ  FD++ +RD  +W  
Sbjct: 418 DMTCIRQGKEIHSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEISERDTSTWNA 477

Query: 287 MIDGYAKLGRVDIARRLFDEMP----KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
           +I GYA+  ++   R L + M     + +V   N+++ G V N     A+++F+ MQ   
Sbjct: 478 LISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQLFNEMQVS- 536

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENA 402
            L PD  ++ I+L+A ++L  I +G  +H Y  +  +  +   G  L+DMY+KCGSI++ 
Sbjct: 537 SLRPDIYTVGIILAACSKLATIHRGKQVHAYSIRAGYDSDAHIGATLVDMYAKCGSIKHC 596

Query: 403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
            +V+ +I + ++   NAM+   A+HG GE    +   M    + PD +TF  +L++C HA
Sbjct: 597 YQVYNKISNPNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSRVRPDHVTFLSVLSSCVHA 656

Query: 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRT 522
           G +K G  CF LM   + + P L+HY CMVD+L RAG ++ A  LI++MPME + V W  
Sbjct: 657 GSIKIGYECFYLME-TYNITPTLKHYTCMVDLLSRAGKLDEAYQLIKNMPMEADSVTWSA 715

Query: 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
           LL  C  ++ + +GE  A+ LI ++ SN+ +YVLL+N++A  G W+D  + R +M ++ +
Sbjct: 716 LLGGCFIHKEVALGEIAAEKLIELEPSNTGNYVLLANLYASAGRWHDLAKTRELMNDKGM 775

Query: 583 KKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +K PGCSWIE    VH F   DKS  +V +IY+MLDN+
Sbjct: 776 QKSPGCSWIEDRDGVHIFLASDKSHQRVEEIYFMLDNL 813



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 188/389 (48%), Gaps = 18/389 (4%)

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           A+ +F++      ++D   WN +I  +       +AL++F  +L  G+  D F+   +L 
Sbjct: 355 AKELFYQMEQEGVERDRISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILT 414

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
             + +  I +G +IH +       S+ F+   L+ +Y +C  +  A+  FD++  RD+ +
Sbjct: 415 GFADMTCIRQGKEIHSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEISERDTST 474

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKM 245
           +N++I GY +   I   REL + M     E N+ +WNS+L G  + K     A Q+F +M
Sbjct: 475 WNALISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQ-YDLAMQLFNEM 533

Query: 246 P----ERDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRV 297
                  D+ +   +L  C K   +   + +     +     D    A ++D YAK G +
Sbjct: 534 QVSSLRPDIYTVGIILAACSKLATIHRGKQVHAYSIRAGYDSDAHIGATLVDMYAKCGSI 593

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
               ++++++   ++V  NAM+  Y  +G+  + + IF  M  +  + PD  + + VLS+
Sbjct: 594 KHCYQVYNKISNPNLVCHNAMLTAYAMHGHGEEGIVIFRRM-LDSRVRPDHVTFLSVLSS 652

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ--IEDGSVD 415
               G I  G      +E    +   KH   ++D+ S+ G ++ A ++ +   +E  SV 
Sbjct: 653 CVHAGSIKIGYECFYLMETYNITPTLKHYTCMVDLLSRAGKLDEAYQLIKNMPMEADSVT 712

Query: 416 HWNAMINGLAIH---GLGELAFDLLMEME 441
            W+A++ G  IH    LGE+A + L+E+E
Sbjct: 713 -WSALLGGCFIHKEVALGEIAAEKLIELE 740


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 200/611 (32%), Positives = 323/611 (52%), Gaps = 82/611 (13%)

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
           + Y     P  A  ++  ML N +  D ++  L+++ACS      E  Q+H  + K+ F 
Sbjct: 186 RAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFD 245

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR------ 205
           SD++++N LI+ +  C  +  A ++F++  + DSVS+NS++ GY++ GN+E A+      
Sbjct: 246 SDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 305

Query: 206 -------------------------ELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQ 240
                                    +LFD M   E+++++W++++  + Q     + A +
Sbjct: 306 PERSIIASNSMIVLFGMRGLVVEACKLFDEM--LEKDMVTWSALIACFQQ-NEMYEEAIR 362

Query: 241 IFEKMPE----RDLISWNSMLHGCV----------------------------------- 261
            F  M +     D +   S L  C                                    
Sbjct: 363 TFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYS 422

Query: 262 KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
           KCG +  A+ LFD+    D++SW +MI GY K   VD A+ +FD MP++DVV+ ++M+ G
Sbjct: 423 KCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISG 482

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
           Y +N    + L +F  MQ   +  PD+ +LV V+SA A+L  +++G  +H Y++++  ++
Sbjct: 483 YAQNDLFDETLALFQEMQMSGF-KPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTI 541

Query: 382 NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEME 441
           N   G  LIDMY KCG +E A++VF  + +  +  WNA+I GLA++GL E + D+   M+
Sbjct: 542 NVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMK 601

Query: 442 RLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHI 501
           +  + P++ITF G+L AC H GLV EG   F  M   HK++P ++HYGCMVD+LGRAG +
Sbjct: 602 KCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKL 661

Query: 502 EAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF 561
           + A  L+  MPM P+   W  LL AC+ + +  +G  V + LI +   +   +VLLSN++
Sbjct: 662 QEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIY 721

Query: 562 AGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM- 620
           A  G W+D   +R MM +  + K+PGCS IE  GV+HEF   DK+   +  I  ML  M 
Sbjct: 722 ASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMA 781

Query: 621 -------WTPD 624
                  +TPD
Sbjct: 782 MKLKLEGYTPD 792



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 203/387 (52%), Gaps = 16/387 (4%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +KD   W+A+I  +      +EA+  F  M   GV VD+  A   L AC+ L ++  G  
Sbjct: 338 EKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKL 397

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           IH L  K+   S + LQN LI +Y +CG +  AR+LFD+  + D +S+NSMI GY+K   
Sbjct: 398 IHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNL 457

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLISWNSM 256
           +++A+ +FDSMP  E++++SW+S+++GYAQ          +F++M     + D  +  S+
Sbjct: 458 VDNAKAIFDSMP--EKDVVSWSSMISGYAQ-NDLFDETLALFQEMQMSGFKPDETTLVSV 514

Query: 257 LHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
           +  C +   ++  + +   + +     +V+    +ID Y K G V+ A  +F  M ++ +
Sbjct: 515 ISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGI 574

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV-AIH 371
              NA++ G   NG    +L++F NM+ + ++ P++ + + VL A   +G +D+G    +
Sbjct: 575 STWNALILGLAMNGLVESSLDMFSNMK-KCHVTPNEITFMGVLGACRHMGLVDEGQHHFY 633

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHGLG 430
             +   +   N KH   ++D+  + G ++ A ++  ++     V  W A++     HG  
Sbjct: 634 SMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDS 693

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLN 457
           E+   +  ++  + ++PD   F  LL+
Sbjct: 694 EMGRRVGRKL--IELQPDHDGFHVLLS 718


>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 206/557 (36%), Positives = 305/557 (54%), Gaps = 72/557 (12%)

Query: 37  MITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSH 96
           MI  GF  NT    +L+ + SS   +    +A  +F        + D F+WN +I+  + 
Sbjct: 1   MIVKGFNSNTSALRELIYA-SSIAISGTMAYAHQLFPHI----TEPDTFMWNTMIRGSAQ 55

Query: 97  GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFL 156
              P  A+ ++  M +  V  DKF+   VLKAC+RL  +           K+ FG     
Sbjct: 56  SPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWV-----------KMGFG----- 99

Query: 157 QNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRER 216
                 ++ R   L F    F +         N++I  +   G++  AR LFD       
Sbjct: 100 ------VHGRVFRLGFESNTFVR---------NTLIYFHANCGDLAVARALFD------- 137

Query: 217 NLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM 276
                     G A+                 RD+++W+++  G  + G++  A+ LFD+M
Sbjct: 138 ----------GSAK-----------------RDVVAWSALTAGYARRGELGVARQLFDEM 170

Query: 277 PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFD 336
           P +D+VSW  MI GYAK G ++ AR+LFDE+PKRDVV  NAM+ GYV  G + +ALE+F+
Sbjct: 171 PVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFE 230

Query: 337 NMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF-SLNGKHGVALIDMYSK 395
            M+    L PD+ +++ +LSA   LG +D G  IH  + +  F  L+   G ALIDMY+K
Sbjct: 231 EMRSVGEL-PDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAK 289

Query: 396 CGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGL 455
           CGSI  A++VF+ + +  V  WN+++ GLA HG  E +  L  EM +L I PD+ITF G+
Sbjct: 290 CGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGV 349

Query: 456 LNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEP 515
           L AC+HAG V+EG   F+LMR  + +EP ++HYGCMVD+LGRAG +  A + I+ M +EP
Sbjct: 350 LVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEP 409

Query: 516 NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRS 575
           N ++WRTLL ACR + N+ +G      L+ M    S  YVLLSN++A  G W+   +VR 
Sbjct: 410 NAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRGEWDGVEKVRK 469

Query: 576 MMKERNLKKLPGCSWIE 592
           +M +  ++K  GCS IE
Sbjct: 470 LMDDSGVRKEAGCSLIE 486



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 122/510 (23%), Positives = 211/510 (41%), Gaps = 137/510 (26%)

Query: 19  LLLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
            +L+ C  L  V     +H R+   GF  NT +   L+  +  + C  L   AR +F   
Sbjct: 83  FVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLI--YFHANCGDLA-VARALF--- 136

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
                K+D   W+A+   Y+                + GV+   F    V          
Sbjct: 137 -DGSAKRDVVAWSALTAGYAR-------------RGELGVARQLFDEMPV---------- 172

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
                            DL   N +I+ Y + G +E AR+LFD++  RD V++N+MI GY
Sbjct: 173 ----------------KDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGY 216

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
           V  G+ + A E+F+ M                            +   ++P  D ++  S
Sbjct: 217 VLCGSNQQALEMFEEM----------------------------RSVGELP--DEVTMLS 246

Query: 256 MLHGCVKCGKMDDAQAL---FDKMPKRD--VVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
           +L  C   G +D  Q +     +M  RD  V+    +ID YAK G +  A  +F  M ++
Sbjct: 247 LLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREK 306

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
           DV   N+++GG   +G++ K++ +F  M+ +L + PD+ + V VL A +  G +++G   
Sbjct: 307 DVSTWNSVLGGLAFHGHAEKSIHLFTEMR-KLKIRPDEITFVGVLVACSHAGRVEEG--- 362

Query: 371 HRYLE--KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            +Y +  +D++++                             + ++ H+  M++ L   G
Sbjct: 363 RQYFDLMRDEYNI-----------------------------EPNIRHYGCMVDLLGRAG 393

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH- 487
           L   AFD +   + + IEP+ I +  LL AC   G V       EL RR +    +++H 
Sbjct: 394 LLNEAFDFI---DTMKIEPNAIVWRTLLGACRIHGNV-------ELGRRANMQLLKMRHD 443

Query: 488 ----YGCMVDILGRAGH---IEAARNLIED 510
               Y  + +I    G    +E  R L++D
Sbjct: 444 ESGDYVLLSNIYASRGEWDGVEKVRKLMDD 473


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 185/489 (37%), Positives = 288/489 (58%), Gaps = 10/489 (2%)

Query: 116 SVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQ 175
           SV  F++  +L+   R GL+ + +++   + +    S   L   L+      G +  AR+
Sbjct: 111 SVVSFTS--LLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLD----AGRVNEARR 164

Query: 176 LFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL 235
           LFD+M  RD V++ +M+ GY ++G I  AR LFD MP  +RN++SW ++++GYAQ    +
Sbjct: 165 LFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP--KRNVVSWTAMISGYAQ-NGEV 221

Query: 236 QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG 295
             A ++FE MPER+ +SW +ML G ++ G ++DA  LF+ MP+  V +   M+ G+ + G
Sbjct: 222 NLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRG 281

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
            VD A+ +F++M +RD    +AM+  Y +N + M+AL  F  M     + P+  S++ +L
Sbjct: 282 MVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWR-GVRPNYPSVISIL 340

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
           +  A L  +D G  +H  + +  F ++     ALI MY KCG+++ A +VF   E   + 
Sbjct: 341 TVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIV 400

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            WN+MI G A HGLGE A  +  +M    + PD IT+ G L AC++ G VKEG   F  M
Sbjct: 401 MWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSM 460

Query: 476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNV 535
                + P  +HY CMVD+LGR+G +E A +LI++MP+EP+ VIW  L+ ACR + N  +
Sbjct: 461 TVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEI 520

Query: 536 GEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG 595
            E  AK L+ ++  N+  YVLLS+++  +G W DA ++R  +  RNL K PGCSWIE + 
Sbjct: 521 AEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDK 580

Query: 596 VVHEFFVRD 604
            VH F   D
Sbjct: 581 RVHLFTSGD 589



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 111/416 (26%), Positives = 199/416 (47%), Gaps = 56/416 (13%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRE-- 215
           N  I+   R G +E AR  F+ M +R + SYN+++ GY ++   ++A  LF  MP R+  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 216 -----------------------------RNLISWNSVLNGYAQLKSGLQFAWQIFEKMP 246
                                         +++S+ S+L GY +    L  A ++F++MP
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVR-HGLLADAIRLFQQMP 139

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
           ER+ +S+  +L G +  G++++A+ LFD+MP RDVV+W  M+ GY + GR+  AR LFDE
Sbjct: 140 ERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDE 199

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           MPKR+VV+  AM+ GY +NG    A ++F+ M        ++ S   +L    Q GH++ 
Sbjct: 200 MPKRNVVSWTAMISGYAQNGEVNLARKLFEVMP-----ERNEVSWTAMLVGYIQAGHVED 254

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDM----YSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
              +        F+   +H VA  +     + + G ++ A  VFE++ +     W+AMI 
Sbjct: 255 AAEL--------FNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIK 306

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
               +     A     EM    + P+  +   +L  CA   ++  G      M R    +
Sbjct: 307 AYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRC-SFD 365

Query: 483 PELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSACRNYENLNVGE 537
            ++     ++ +  + G+++ A+ +      EP D++ W ++++    Y    +GE
Sbjct: 366 MDVFAVSALITMYIKCGNLDKAKRVFHT--FEPKDIVMWNSMIT---GYAQHGLGE 416



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 141/318 (44%), Gaps = 42/318 (13%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   W+A+IK Y       EAL  F  ML  GV  +  S   +L  C+ L +++ G +
Sbjct: 295 ERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGRE 354

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  + + +F  D+F  + LI++Y++CG L+ A+++F     +D V +NSMI GY + G 
Sbjct: 355 VHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGL 414

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
            E A  +F  M +                   +G+             D I++   L  C
Sbjct: 415 GEQALGIFHDMRL-------------------AGMS-----------PDGITYIGALTAC 444

Query: 261 VKCGKMDDAQALFDKMPKRDVVS-----WANMIDGYAKLGRVDIARRLFDEMP-KRDVVA 314
              GK+ + + +F+ M     +      ++ M+D   + G V+ A  L   MP + D V 
Sbjct: 445 SYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVI 504

Query: 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI-AQLGHIDKGVAIHRY 373
             A+MG   R   + +  E       E  L P +A   ++LS I   +G  +    + ++
Sbjct: 505 WGALMGA-CRMHRNAEIAEFAAKKLLE--LEPGNAGPYVLLSHIYTSVGRWEDASKMRKF 561

Query: 374 LEKDQFSLNGKHGVALID 391
           +     +LN   G + I+
Sbjct: 562 ISSR--NLNKSPGCSWIE 577



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 146/360 (40%), Gaps = 57/360 (15%)

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
           N+ +    + G ++ A+A F+ MP R   S+  ++ GY +    D A  LF  MP RD+ 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 314 ACNAMMG---------------------------------GYVRNGYSMKALEIFDNMQC 340
           + NA++                                  GYVR+G    A+ +F  M  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMP- 139

Query: 341 ELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE 400
                 +  S  ++L  +   G +++     R L  +    +     A++  Y + G I 
Sbjct: 140 ----ERNHVSYTVLLGGLLDAGRVNEA----RRLFDEMPDRDVVAWTAMLSGYCQAGRIT 191

Query: 401 NAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460
            A  +F+++   +V  W AMI+G A +G   LA  L   M     E +++++T +L    
Sbjct: 192 EARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMP----ERNEVSWTAMLVGYI 247

Query: 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGC--MVDILGRAGHIEAARNLIEDMPMEPNDV 518
            AG V++    F  M       PE     C  M+   G+ G ++AA+ + E M  E +D 
Sbjct: 248 QAGHVEDAAELFNAM-------PEHPVAACNAMMVGFGQRGMVDAAKTVFEKM-CERDDG 299

Query: 519 IWRTLLSACRNYENLNVGEPVAKHLIGMD-SSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
            W  ++ A    E L       + ++      N  S + +  + A L + +  R V + M
Sbjct: 300 TWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAM 359



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 96/231 (41%), Gaps = 54/231 (23%)

Query: 3   VSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCT 62
           V  NY     S  S L +      L+   ++HA M+   F  +    + L+  +    C 
Sbjct: 329 VRPNYP----SVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIK--CG 382

Query: 63  PLTEFARYIFFKYHAFREKKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFS 121
            L +  R     +H F E KD  +WN++I  Y+ HGL  ++AL +F  M   G+S D  +
Sbjct: 383 NLDKAKRV----FHTF-EPKDIVMWNSMITGYAQHGLG-EQALGIFHDMRLAGMSPDGIT 436

Query: 122 ASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
               L ACS  G ++EG                                   R++F+ M 
Sbjct: 437 YIGALTACSYTGKVKEG-----------------------------------REIFNSMT 461

Query: 182 IRDSVS-----YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNG 227
           +  S+      Y+ M+D   +SG +E A +L  +MP+ E + + W +++  
Sbjct: 462 VNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPV-EPDAVIWGALMGA 511


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 175/438 (39%), Positives = 266/438 (60%), Gaps = 4/438 (0%)

Query: 167 CGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLN 226
            G +  AR+LFD+M  RD V++ +M+ GY ++G I  AR LFD MP  +RN++SW ++++
Sbjct: 156 AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP--KRNVVSWTAMIS 213

Query: 227 GYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN 286
           GYAQ    +  A ++FE MPER+ +SW +ML G ++ G ++DA  LF+ MP+  V +   
Sbjct: 214 GYAQ-NGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNA 272

Query: 287 MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP 346
           M+ G+ + G VD A+ +F++M +RD    +AM+  Y +N + M+AL  F  M     + P
Sbjct: 273 MMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWR-GVRP 331

Query: 347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVF 406
           +  S++ +L+  A L  +D G  +H  + +  F ++     ALI MY KCG+++ A +VF
Sbjct: 332 NYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVF 391

Query: 407 EQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVK 466
              E   +  WN+MI G A HGLGE A  +  +M    + PD IT+ G L AC++ G VK
Sbjct: 392 HTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVK 451

Query: 467 EGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           EG   F  M     + P  +HY CMVD+LGR+G +E A +LI++MP+EP+ VIW  L+ A
Sbjct: 452 EGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGA 511

Query: 527 CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLP 586
           CR + N  + E  AK L+ ++  N+  YVLLS+++  +G W DA ++R  +  RNL K P
Sbjct: 512 CRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSP 571

Query: 587 GCSWIELEGVVHEFFVRD 604
           GCSWIE +  VH F   D
Sbjct: 572 GCSWIEYDKRVHLFTSGD 589



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/416 (26%), Positives = 199/416 (47%), Gaps = 56/416 (13%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRE-- 215
           N  I+   R G +E AR  F+ M +R + SYN+++ GY ++   ++A  LF  MP R+  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 216 -----------------------------RNLISWNSVLNGYAQLKSGLQFAWQIFEKMP 246
                                         +++S+ S+L GY +    L  A ++F++MP
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVR-HGLLADAIRLFQQMP 139

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
           ER+ +S+  +L G +  G++++A+ LFD+MP RDVV+W  M+ GY + GR+  AR LFDE
Sbjct: 140 ERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDE 199

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           MPKR+VV+  AM+ GY +NG    A ++F+ M        ++ S   +L    Q GH++ 
Sbjct: 200 MPKRNVVSWTAMISGYAQNGEVNLARKLFEVMP-----ERNEVSWTAMLVGYIQAGHVED 254

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDM----YSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
              +        F+   +H VA  +     + + G ++ A  VFE++ +     W+AMI 
Sbjct: 255 AAEL--------FNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIK 306

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
               +     A     EM    + P+  +   +L  CA   ++  G      M R    +
Sbjct: 307 AYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRC-SFD 365

Query: 483 PELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSACRNYENLNVGE 537
            ++     ++ +  + G+++ A+ +      EP D++ W ++++    Y    +GE
Sbjct: 366 MDVFAVSALITMYIKCGNLDKAKRVFHT--FEPKDIVMWNSMIT---GYAQHGLGE 416



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 113/247 (45%), Gaps = 36/247 (14%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   W+A+IK Y       EAL  F  ML  GV  +  S   +L  C+ L +++ G +
Sbjct: 295 ERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGRE 354

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  + + +F  D+F  + LI++Y++CG L+ A+++F     +D V +NSMI GY + G 
Sbjct: 355 VHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGL 414

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
            E A  +F  M +                   +G+             D I++   L  C
Sbjct: 415 GEQALGIFHDMRL-------------------AGMS-----------PDGITYIGALTAC 444

Query: 261 VKCGKMDDAQALFDKMPKRDVVS-----WANMIDGYAKLGRVDIARRLFDEMP-KRDVVA 314
              GK+ + + +F+ M     +      ++ M+D   + G V+ A  L   MP + D V 
Sbjct: 445 SYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVI 504

Query: 315 CNAMMGG 321
             A+MG 
Sbjct: 505 WGALMGA 511



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 50/221 (22%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           S  S L +      L+   ++HA M+   F  +    + L+  +    C  L +  R   
Sbjct: 335 SVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIK--CGNLDKAKRV-- 390

Query: 73  FKYHAFREKKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
             +H F E KD  +WN++I  Y+ HGL  ++AL +F  M   G+S D  +    L ACS 
Sbjct: 391 --FHTF-EPKDIVMWNSMITGYAQHGLG-EQALGIFHDMRLAGMSPDGITYIGALTACSY 446

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS---- 187
            G ++EG                                   R++F+ M +  S+     
Sbjct: 447 TGKVKEG-----------------------------------REIFNSMTVNSSIRPGAE 471

Query: 188 -YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNG 227
            Y+ M+D   +SG +E A +L  +MP+ E + + W +++  
Sbjct: 472 HYSCMVDLLGRSGLVEEAFDLIKNMPV-EPDAVIWGALMGA 511


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 188/463 (40%), Positives = 277/463 (59%), Gaps = 13/463 (2%)

Query: 160 LISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLI 219
           +IS Y+R    + AR LFDKM  RD  S+N M+ GYV++ ++++AR LF+ MP  ER+++
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMP--ERDIV 58

Query: 220 SWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR 279
           SWN++L+GYAQ    +  A +IF KMP ++ ISWN +L   V+ G+++DA+ LF+     
Sbjct: 59  SWNAMLSGYAQ-NGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDW 117

Query: 280 DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQ 339
            +VSW  ++ G+     V   R LFD MP+RD ++ +AM+ GY +NG S +AL  F  MQ
Sbjct: 118 TLVSWNCLMGGF-----VRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQ 172

Query: 340 --CELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
             CE     + +S    LS  + +  ++ G  +H  L K  +      G AL+ MY KCG
Sbjct: 173 RDCE---RLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCG 229

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
           SI+ A   F++I +  V  WN MI+G A HG GE A  +   M+   I PDD T   +L 
Sbjct: 230 SIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLA 289

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
           AC+HAGLV +G   F  M R + +  +L HY CMVD+LGRAG +E A+NL+++MP EP+ 
Sbjct: 290 ACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDA 349

Query: 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
             W  LL A R + N  +GE  A+ +  M+  NS  Y+LLS ++A  G W+DA ++R  M
Sbjct: 350 ATWGALLGASRIHGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEM 409

Query: 578 KERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           + + +KK+PG SW+E++  +H F V D S      IY  L+ M
Sbjct: 410 RNKGVKKVPGYSWLEVQNKIHTFKVGDTSHPHTDKIYTFLEEM 452



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 120/240 (50%), Gaps = 13/240 (5%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   W+A+I  YS     +EAL  F  M  +   +++ S +  L  CS +  +E G Q
Sbjct: 142 QRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQ 201

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  L K  + +  ++ N L+++Y +CG ++ AR  F ++  +D VS+N+MI GY + G 
Sbjct: 202 LHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGF 261

Query: 201 IESARELFDSMP---IR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP-ERDLISWN 254
            E A  +F+ M    IR  +  ++S  +  +    +  G ++ + +         L+ + 
Sbjct: 262 GEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYT 321

Query: 255 SMLHGCVKCGKMDDAQALFDKMP-KRDVVSW-----ANMIDGYAKLGRVDIARRLFDEMP 308
            M+    + G++++AQ L   MP + D  +W     A+ I G  +LG    A+ +F+  P
Sbjct: 322 CMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGE-KAAQIIFEMEP 380


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 197/593 (33%), Positives = 324/593 (54%), Gaps = 24/593 (4%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY--IFFKYHA 77
           +L  C +L    +IH R+  +G           + SF S     +T +AR+  +      
Sbjct: 116 VLGACSSLAQGREIHNRVFYSG-----------LDSFQSLANALVTMYARFGSVGDAKRM 164

Query: 78  FR--EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
           F+  + +D   WNA+I  +S   D   AL +F  M  + V  +  +   V+   S   ++
Sbjct: 165 FQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCD-VKPNSTTYINVISGFSTPEVL 223

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
            EG +IH  +    F +DL +   LI++Y +CG    AR++FDKM  RD VS+N MI  Y
Sbjct: 224 PEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCY 283

Query: 196 VKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKS---GLQFAWQIFEKMPERDL 250
           V +G+   A EL+  + +   +R   ++ S+L   + +K+   G      I E+  + ++
Sbjct: 284 VLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEV 343

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG---RVDIARRLFDEM 307
               ++++   KCG +++A+ +F+ M  RD V+W+ +I  YA  G       AR++FD +
Sbjct: 344 AVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRL 403

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
             RD ++ NAM+  YV+NG ++ A++IF  M     L PD  + + VL A A LG + + 
Sbjct: 404 GSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEV 463

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
            A+H  + + +   N      LI+MY++CGS+E A ++F   ++ +V  W AM+   + +
Sbjct: 464 KALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQY 523

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           G    A DL  EM+   ++PDD+T+T +L  C H G +++G   F  M  +H L P   H
Sbjct: 524 GRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADH 583

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
           +  MVD+LGR+G +  A+ L+E MP EP+ V W T L+ACR +  L +GE  A+ +  +D
Sbjct: 584 FAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELD 643

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
            S+++ Y+ +SN++A  GMW     VR  M+ER LKKLPG S+IE++G +HEF
Sbjct: 644 PSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEF 696



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 137/527 (25%), Positives = 246/527 (46%), Gaps = 53/527 (10%)

Query: 9   QPCNSTQSTLLLLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLT 65
           QP N T  T+L    C +  DV +   +H R+  + F ++T +   L++ +    C  L 
Sbjct: 4   QPDNVTFLTVLC--SCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYG--KCDSLV 59

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
           + AR +F +   +R++ +   WNA+I  Y+      EALV++  M   G+  D  +   V
Sbjct: 60  D-ARSVF-ESMDWRQR-NVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSV 116

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           L ACS L    +G +IH  +      S   L N L+++Y R G +  A+++F  +  RD 
Sbjct: 117 LGACSSLA---QGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDE 173

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRER-NLISWNSVLNGYAQ---LKSGLQFAWQI 241
            S+N++I  + +SG+   A  +F  M    + N  ++ +V++G++    L  G +   +I
Sbjct: 174 TSWNAVILAHSQSGDWSGALRIFKEMKCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEI 233

Query: 242 FEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIAR 301
                + DL+   ++++   KCG   +A+ +FDKM KRD+VSW                 
Sbjct: 234 VANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSW----------------- 276

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
                         N M+G YV NG   +ALE++  +  E +     A+ V +L A + +
Sbjct: 277 --------------NVMIGCYVLNGDFHEALELYQKLDMEGFKRT-KATFVSILGACSSV 321

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
             + +G  +H ++ +           AL++MY+KCGS+E A KVF  +++     W+ +I
Sbjct: 322 KALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLI 381

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
              A +G G+ A       +RL    D I++  ++      G     +  F  M     L
Sbjct: 382 GAYASNGYGKDARKARKVFDRLG-SRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGL 440

Query: 482 EPELQHYGCMVDI---LGRAGHIEAARNLIEDMPMEPNDVIWRTLLS 525
           +P+   +  +++    LGR   ++A    I +  +E N V+  TL++
Sbjct: 441 KPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLIN 487



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/407 (26%), Positives = 189/407 (46%), Gaps = 41/407 (10%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           VL +CS  G + EG  +H  +R   F  D  + N LIS+Y +C                 
Sbjct: 13  VLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKC----------------- 55

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQI 241
               +S++D          AR +F+SM  R+RN++SWN+++  YAQ       L   W++
Sbjct: 56  ----DSLVD----------ARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRM 101

Query: 242 FEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN-MIDGYAKLGRVDIA 300
             +    D +++ S+L  C    +  +              S AN ++  YA+ G V  A
Sbjct: 102 NLQGLGTDHVTFVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDA 161

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
           +R+F  +  RD  + NA++  + ++G    AL IF  M+C+  + P+  + + V+S  + 
Sbjct: 162 KRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCD--VKPNSTTYINVISGFST 219

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
              + +G  IH  +  + F  +     ALI+MY KCGS   A +VF++++   +  WN M
Sbjct: 220 PEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVM 279

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE-LMRRIH 479
           I    ++G    A +L  +++    +    TF  +L AC+    + +G L    ++ R  
Sbjct: 280 IGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILER-- 337

Query: 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
            L+ E+     +V++  + G +E AR +   M    + V W TL+ A
Sbjct: 338 GLDSEVAVATALVNMYAKCGSLEEARKVFNAMK-NRDAVAWSTLIGA 383



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 117/271 (43%), Gaps = 34/271 (12%)

Query: 345 HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIK 404
            PD+ + + VL + +  G + +G A+H  +   +F  +   G ALI MY KC S+ +A  
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 405 VFEQIE--DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA-- 460
           VFE ++    +V  WNAMI   A +G    A  L   M    +  D +TF  +L AC+  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 461 ------HAGLVKEGLLCFELM------------------RRIHKLEP-ELQHYGCMVDIL 495
                 H  +   GL  F+ +                  R    L+  +   +  ++   
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAH 183

Query: 496 GRAGHIEAARNLIEDMP--MEPNDVIWRTLLSACRNYENLNVGEPVAKHLI--GMDSSNS 551
            ++G    A  + ++M   ++PN   +  ++S     E L  G  +   ++  G D+   
Sbjct: 184 SQSGDWSGALRIFKEMKCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLV 243

Query: 552 SSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
            +  L+ NM+   G  ++AR V   MK+R++
Sbjct: 244 VATALI-NMYGKCGSSHEAREVFDKMKKRDM 273


>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 203/622 (32%), Positives = 345/622 (55%), Gaps = 35/622 (5%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
            +TL+LL KC T +   QI A+++    I  T   ++L+    S+   P       + F+
Sbjct: 32  HATLILLEKCSTRDHFKQILAQIMRINLIGQTFPMSRLI--LFSAITHPENLDMAVLLFR 89

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
           +H      + +++N +I   S  L+  ++   +  +L + +  ++ +   +L+A   L  
Sbjct: 90  HHT--PHPNLYIYNTMISALSLSLN--QSFAFYNSLLSSCIYPNRSTFLFLLQASKFLSQ 145

Query: 135 IEEGLQIHGLLRKVAFGSDLF--LQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
           +   +QIH     +  GS  +  LQN L+ +Y+    +  A Q+F +M   D+VS+N MI
Sbjct: 146 V---MQIH--CHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMI 200

Query: 193 DGYVKSG-NIESARELFDSMPIRERN--------LISWNSVLNGYAQLKSGLQFAWQIFE 243
            GY K G NIE+ + L + + +  +         LI    +  G AQL   +  AW   E
Sbjct: 201 FGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRL--GDAQLGKSVH-AW--IE 255

Query: 244 K---MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIA 300
           +   +   +LI  N++L   VKC ++  AQ++F+ + ++D +SW  MI GYAK+G ++IA
Sbjct: 256 RRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIA 315

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
              F++MP RD+V+ N+++ GY + G  +    +F+NM  E  + PD  +++ ++SA A+
Sbjct: 316 HNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAE-NIWPDFVTIINLVSAAAE 374

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
           +G +  G  IH ++ + Q  ++   G A IDMY KCGSI+ A  VF ++ +  V  W  M
Sbjct: 375 IGALHHGRWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTM 434

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           I G A HG G  A  L  EM+   + P+ +TF  +L AC+H+G V +GL  F  M+  + 
Sbjct: 435 ITGFAFHGYGSKALQLFYEMQEY-VMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYG 493

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           +EP ++HYGC+VD+LGR+G     +++IE MPM+P+  IW  +LSACR Y N+ + E   
Sbjct: 494 IEPGVEHYGCLVDLLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSACRAYGNIEIAEIAG 553

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
           K L+ ++      YVLLSN++A  G W  + ++R +M+ R +KK  GCS + ++G++HEF
Sbjct: 554 KELLKLEPEKEGGYVLLSNIYATSGRWKHSDKIREIMESRGVKKTAGCSSVVVDGIIHEF 613

Query: 601 FVRDKSR---LQVRDIYYMLDN 619
              DK     ++++ I + L +
Sbjct: 614 VAADKRHPRWIEIQSILFCLKS 635


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 206/610 (33%), Positives = 325/610 (53%), Gaps = 28/610 (4%)

Query: 34  HARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKT 93
           HA +  +GF  N  +   +V+ +    C  L     +  F     R  +D   WN+++  
Sbjct: 282 HATVSRSGFASNVFVCNAVVSMYGK--CGALRH--AHNMFDDLCHRGIQDLVSWNSVVSA 337

Query: 94  YSHGLDPKEALVMFCLMLDNGV-SVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGS 152
           Y    D   AL +F  M    + S D  S   +L AC+ L     G Q+HG   +     
Sbjct: 338 YMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVD 397

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           D+F+ N ++ +Y +CG +E A ++F +M  +D VS+N+M+ GY ++G +E A  LF+ M 
Sbjct: 398 DVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMT 457

Query: 213 IR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKM----PERDLISWNSMLHGCVKCGKM 266
               E ++++W +V+ GYAQ   G + A  +F +M       ++++  S+L  CV  G +
Sbjct: 458 EENIELDVVTWTAVITGYAQRGQGCE-ALDVFRQMCDCGSRPNVVTLVSLLSACVSVGAL 516

Query: 267 DDAQA-----------LFDKMPKRDVVSWAN-MIDGYAKLGRVDIARRLFDEM-PK-RDV 312
              +            L    P  D +   N +ID YAK    ++AR++FD + PK RDV
Sbjct: 517 LHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDV 576

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           V    M+GGY ++G +  AL++F  M + +  + P+D +L   L A A+L  +  G  +H
Sbjct: 577 VTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVH 636

Query: 372 RYLEKDQF-SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
            Y+ ++ + S+       LIDMYSK G ++ A  VF+ +   +   W +++ G  +HG G
Sbjct: 637 AYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRG 696

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
           E A  +  EM ++ + PD ITF  +L AC+H+G+V  G+  F  M +   ++P  +HY C
Sbjct: 697 EDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYAC 756

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           MVD+ GRAG +  A  LI +MPMEP  V+W  LLSACR + N+ +GE  A  L+ ++S N
Sbjct: 757 MVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGN 816

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQV 610
             SY LLSN++A    W D  R+R  MK   +KK PGCSWI+    V  F+V D+S  Q 
Sbjct: 817 DGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQS 876

Query: 611 RDIYYMLDNM 620
           + IY  L ++
Sbjct: 877 QQIYETLADL 886



 Score =  221 bits (564), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 158/532 (29%), Positives = 266/532 (50%), Gaps = 36/532 (6%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L++C +L     +H + I  G +   HL T L+ ++ +S  T     A  I         
Sbjct: 168 LKECNSLAHAKLLHQQSIMQGLL--FHLATNLIGTYIASNST-----AYAILLLERLPPS 220

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
               F WN +I+   H   P++   ++  M   G + D ++   V KAC+ L  +  G  
Sbjct: 221 PSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGAS 280

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM---GIRDSVSYNSMIDGYVK 197
           +H  + +  F S++F+ N ++S+Y +CG L  A  +FD +   GI+D VS+NS++  Y+ 
Sbjct: 281 LHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMW 340

Query: 198 SGNIESARELFDSMPIRE---RNLISWNSVLNGYAQLKSGLQ----FAWQIFEKMPERDL 250
           + +  +A  LF  M  R     ++IS  ++L   A L + L+      + I   + + D+
Sbjct: 341 ASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVD-DV 399

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
              N+++    KCGKM++A  +F +M  +DVVSW  M+ GY++ GR++ A  LF+ M + 
Sbjct: 400 FVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEE 459

Query: 311 ----DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
               DVV   A++ GY + G   +AL++F  M C+    P+  +LV +LSA   +G +  
Sbjct: 460 NIELDVVTWTAVITGYAQRGQGCEALDVFRQM-CDCGSRPNVVTLVSLLSACVSVGALLH 518

Query: 367 GVAIHRYLEKDQFSLNGKHGVA--------LIDMYSKCGSIENAIKVFEQI--EDGSVDH 416
           G   H Y  K   +L+G    A        LIDMY+KC S E A K+F+ +  +D  V  
Sbjct: 519 GKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVT 578

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERL--SIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
           W  MI G A HG    A  L   M ++  SI+P+D T +  L ACA    ++ G      
Sbjct: 579 WTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAY 638

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           + R       L    C++D+  ++G ++ A+ + ++MP + N V W +L++ 
Sbjct: 639 VLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMP-QRNAVSWTSLMTG 689


>gi|255559617|ref|XP_002520828.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539959|gb|EEF41537.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 656

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 192/576 (33%), Positives = 323/576 (56%), Gaps = 49/576 (8%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   + ++I  Y    D  +A ++F  + +  V  D    S ++    R G +++  Q
Sbjct: 79  RRDAVSYASMITVYLKNKDLPQAEILFREIPERNVVAD----SAMISGYVRAGRLDKARQ 134

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +   + +     ++F    L+S Y + G ++ A +LF++M  ++ VS+ + + GY ++G 
Sbjct: 135 VFDQMVE----RNVFSWTSLVSGYFKIGNVDEAMRLFNQMPEKNVVSWTTAVVGYAQNGF 190

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
           I+ AR++F+ MP  E+N+I+W +++  Y +    +  A+++F +MP+R+L SWN M+ GC
Sbjct: 191 IDEARDIFNQMP--EKNIIAWTAMVKSYVE-NDEIDEAFELFYQMPQRNLYSWNIMISGC 247

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
           +   ++++A  LF+ MP+R+ VSW  ++ G A+ G +++AR+ FD MP +D+ A NAM+ 
Sbjct: 248 INANRLNEAIQLFNSMPQRNEVSWTTLVTGLARNGMMELARKYFDHMPTKDIAAWNAMIT 307

Query: 321 GYVRNGYSMKALEIFDNMQCE----------------------LYL--------HPDDAS 350
            YV  G   +A  +F+ M  +                       YL         P++ +
Sbjct: 308 AYVDQGSMAEASNLFNLMPEKNIVSWNALIDGYARNGPESNSLRYLILMLRSNFKPNETT 367

Query: 351 LVIVLSAIAQLGHIDK--GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ 408
           +  VL+A   +  + +  G+ IH   E+D+   NG     L+  YS+CG + +A  +F+Q
Sbjct: 368 ITSVLTACDSILELMQAHGLVIHLGFEQDKVLANG-----LVTTYSRCGDVLSARFIFDQ 422

Query: 409 IEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
           +E   +  W AMI   + HG G  A  +   M R   +PD ITF GLL+AC+HAGLVK+G
Sbjct: 423 LEIKDIVSWTAMILAYSNHGCGPHALQVFARMLRSGAKPDGITFVGLLSACSHAGLVKKG 482

Query: 469 LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRTLLSAC 527
            + F+ M   + +EP  +HY C+VDILGRAG +  A  ++ +M P E +  +   LL AC
Sbjct: 483 QMLFDSMSCAYGVEPRAEHYSCLVDILGRAGEMNKAMKVVSEMPPHECDGAVLGALLGAC 542

Query: 528 RNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPG 587
           R ++++ +   + + LI  + ++S SYVLL+N +A  G WN+   VR  MKERN+KK PG
Sbjct: 543 RLHKDVGLANHIGEKLIEKEPTSSGSYVLLANAYAACGKWNEFAEVRKEMKERNVKKEPG 602

Query: 588 CSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTP 623
            S IE++G  H FFVRD+S  Q+ +IY  LD    P
Sbjct: 603 FSQIEVKGKSHVFFVRDRSHPQLEEIYLFLDEKLLP 638



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 123/415 (29%), Positives = 216/415 (52%), Gaps = 54/415 (13%)

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD 209
           F SD +  N  IS     G ++ AR++FD+M  RD+VSY SMI  Y+K+ ++  A  LF 
Sbjct: 47  FASDTYESNVKISNLGLRGKVKEARKVFDEMPRRDAVSYASMITVYLKNKDLPQAEILFR 106

Query: 210 SMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDD 268
            +P  ERN+++ +++++GY  +++G L  A Q+F++M ER++ SW S++ G  K G +D+
Sbjct: 107 EIP--ERNVVADSAMISGY--VRAGRLDKARQVFDQMVERNVFSWTSLVSGYFKIGNVDE 162

Query: 269 AQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYS 328
           A  LF++MP+++VVSW   + GYA+ G +D AR +F++MP+++++A  AM+  YV N   
Sbjct: 163 AMRLFNQMPEKNVVSWTTAVVGYAQNGFIDEARDIFNQMPEKNIIAWTAMVKSYVENDEI 222

Query: 329 MKALEIFDNM-QCELY-------------------------LHPDDASLVIVLSAIAQLG 362
            +A E+F  M Q  LY                            ++ S   +++ +A+ G
Sbjct: 223 DEAFELFYQMPQRNLYSWNIMISGCINANRLNEAIQLFNSMPQRNEVSWTTLVTGLARNG 282

Query: 363 HIDKGVAIHRYLE-KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
            ++       ++  KD  + N     A+I  Y   GS+  A  +F  + + ++  WNA+I
Sbjct: 283 MMELARKYFDHMPTKDIAAWN-----AMITAYVDQGSMAEASNLFNLMPEKNIVSWNALI 337

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR---- 477
           +G A +G    +   L+ M R + +P++ T T +L AC             ELM+     
Sbjct: 338 DGYARNGPESNSLRYLILMLRSNFKPNETTITSVLTACDS---------ILELMQAHGLV 388

Query: 478 IH-KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSACRNY 530
           IH   E +      +V    R G + +AR + +   +E  D++ W  ++ A  N+
Sbjct: 389 IHLGFEQDKVLANGLVTTYSRCGDVLSARFIFDQ--LEIKDIVSWTAMILAYSNH 441



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 131/310 (42%), Gaps = 54/310 (17%)

Query: 31  NQIHARMITTGFIKN----------THLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           N++    + TG  +N           H+ TK +A++++     + + +            
Sbjct: 267 NEVSWTTLVTGLARNGMMELARKYFDHMPTKDIAAWNAMITAYVDQGSMAEASNLFNLMP 326

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +K+   WNA+I  Y+       +L    LML +    ++ + + VL AC     I E +Q
Sbjct: 327 EKNIVSWNALIDGYARNGPESNSLRYLILMLRSNFKPNETTITSVLTACDS---ILELMQ 383

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
            HGL+  + F  D  L N L++ Y RCG +  AR +FD++ I+D VS+ +MI  Y   G 
Sbjct: 384 AHGLVIHLGFEQDKVLANGLVTTYSRCGDVLSARFIFDQLEIKDIVSWTAMILAYSNHGC 443

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
              A ++F  M                   L+SG +            D I++  +L  C
Sbjct: 444 GPHALQVFARM-------------------LRSGAK-----------PDGITFVGLLSAC 473

Query: 261 VKCGKMDDAQALFDKM-------PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR--D 311
              G +   Q LFD M       P+ +   ++ ++D   + G ++ A ++  EMP    D
Sbjct: 474 SHAGLVKKGQMLFDSMSCAYGVEPRAE--HYSCLVDILGRAGEMNKAMKVVSEMPPHECD 531

Query: 312 VVACNAMMGG 321
                A++G 
Sbjct: 532 GAVLGALLGA 541



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 121/282 (42%), Gaps = 55/282 (19%)

Query: 9   QPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFA 68
           +P  +T +++L    C ++ ++ Q H  +I  GF ++  L   LV ++S   C  +   A
Sbjct: 362 KPNETTITSVLT--ACDSILELMQAHGLVIHLGFEQDKVLANGLVTTYSR--CGDVLS-A 416

Query: 69  RYIFFKYHAFREKKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           R+IF +     E KD   W A+I  YS HG  P  AL +F  ML +G   D  +   +L 
Sbjct: 417 RFIFDQL----EIKDIVSWTAMILAYSNHGCGP-HALQVFARMLRSGAKPDGITFVGLLS 471

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           ACS  GL+++G                                   + LFD M     V 
Sbjct: 472 ACSHAGLVKKG-----------------------------------QMLFDSMSCAYGVE 496

Query: 188 -----YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIF 242
                Y+ ++D   ++G +  A ++   MP  E +     ++L G  +L   +  A  I 
Sbjct: 497 PRAEHYSCLVDILGRAGEMNKAMKVVSEMPPHECDGAVLGALL-GACRLHKDVGLANHIG 555

Query: 243 EKMPERDLISWNS---MLHGCVKCGKMDDAQALFDKMPKRDV 281
           EK+ E++  S  S   + +    CGK ++   +  +M +R+V
Sbjct: 556 EKLIEKEPTSSGSYVLLANAYAACGKWNEFAEVRKEMKERNV 597


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 212/674 (31%), Positives = 356/674 (52%), Gaps = 89/674 (13%)

Query: 19  LLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAF 78
           L+ R C  +N   Q+HA ++  G  ++  L T+LV  +++     L+       FK+   
Sbjct: 56  LVFRSCTNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTT----FKH--- 108

Query: 79  REKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLD-NGVSVDKFSASLVLKACSRLGLIEE 137
            ++K+ F WN+++  Y      ++++     +L  +GV  D ++   VLKAC  L    +
Sbjct: 109 IQRKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLA---D 165

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G ++H  + K+ F  D+++   LI LY R G +E A ++F  M +RD  S+N+MI G+ +
Sbjct: 166 GEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQ 225

Query: 198 SGNIESARELFDSM----------------PI---------------------RERNLIS 220
           +GN+  A  + D M                PI                      E ++  
Sbjct: 226 NGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFV 285

Query: 221 WNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM---- 276
            N+++N Y++    LQ A ++F+ M  RDL+SWNS++    +      A   F +M    
Sbjct: 286 SNALINMYSKFGR-LQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVG 344

Query: 277 --P----------------------------------KRDVVSWANMIDGYAKLGRVDIA 300
             P                                  + D+V    +++ YAKLG +D A
Sbjct: 345 MRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCA 404

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
           R +F+++P RDV++ N ++ GY +NG + +A++ ++ M+    + P+  + V +L A + 
Sbjct: 405 RAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSH 464

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
           +G + +G+ IH  L K+   L+      LIDMY KCG +E+A+ +F +I   +   WNA+
Sbjct: 465 VGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAI 524

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           I+ L IHG GE A  L  +M    ++ D ITF  LL+AC+H+GLV E   CF+ M++ ++
Sbjct: 525 ISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYR 584

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           ++P L+HYGCMVD+ GRAG++E A NL+ +MP++ +  IW TLL+ACR + N  +G   +
Sbjct: 585 IKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFAS 644

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
             L+ +DS N   YVLLSN++A +G W  A +VRS+ ++R L+K PG S + +  VV  F
Sbjct: 645 DRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVF 704

Query: 601 FVRDKSRLQVRDIY 614
           +  ++S  Q  +IY
Sbjct: 705 YAGNQSHPQCAEIY 718



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 130/487 (26%), Positives = 222/487 (45%), Gaps = 97/487 (19%)

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI 182
           +LV ++C+ + + +   Q+H LL  +    D+ L   L++LY   G L  +   F  +  
Sbjct: 55  NLVFRSCTNINVAK---QLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQR 111

Query: 183 RDSVSYNSMIDGYVKSG----NIESARELFDSMPIRERNLISWNSVLNGYAQLKSG---- 234
           ++  S+NSM+  YV+ G    +++   EL     +R  +  ++  VL     L  G    
Sbjct: 112 KNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRP-DFYTFPPVLKACLSLADGEKMH 170

Query: 235 ---------------------------LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMD 267
                                      ++ A ++F  MP RD+ SWN+M+ G  + G + 
Sbjct: 171 CWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVA 230

Query: 268 DAQALFDKMP----KRDVVSWANM-----------------------------------I 288
           +A  + D+M     K D V+ ++M                                   I
Sbjct: 231 EALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALI 290

Query: 289 DGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD 348
           + Y+K GR+  A+R+FD M  RD+V+ N+++  Y +N   + AL  F  M   + + PD 
Sbjct: 291 NMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEM-LFVGMRPDL 349

Query: 349 ASLVIVLSAIAQLGHIDKGVAIH------RYLEKDQFSLNGKHGVALIDMYSKCGSIENA 402
            ++V + S   QL     G A+H      R+LE D        G AL++MY+K GSI+ A
Sbjct: 350 LTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVI-----GNALVNMYAKLGSIDCA 404

Query: 403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMER-LSIEPDDITFTGLLNACAH 461
             VFEQ+    V  WN +I G A +GL   A D    ME   +I P+  T+  +L A +H
Sbjct: 405 RAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSH 464

Query: 462 AGLVKEGLLCFELMRRIHK--LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI 519
            G +++G+   ++  R+ K  L  ++    C++D+ G+ G +E A +L  ++P E   V 
Sbjct: 465 VGALQQGM---KIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQE-TSVP 520

Query: 520 WRTLLSA 526
           W  ++S+
Sbjct: 521 WNAIISS 527



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 163/360 (45%), Gaps = 19/360 (5%)

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPK-RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           +N +   C          AL   + K +DVV    ++  YA LG + ++   F  + +++
Sbjct: 54  FNLVFRSCTNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKN 113

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           + + N+M+  YVR G    +++    +     + PD  +   VL A   L     G  +H
Sbjct: 114 IFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLA---DGEKMH 170

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
            ++ K  F  +     +LI +YS+ G++E A KVF  +    V  WNAMI+G   +G   
Sbjct: 171 CWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVA 230

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            A  +L  M+   ++ D +T + +L  CA +  V  G+L    + + H LE ++     +
Sbjct: 231 EALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIK-HGLESDVFVSNAL 289

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSACRNYENLNVGEPVAKHL--IGMDS 548
           +++  + G ++ A+ + +   ME  D++ W ++++A    ++        K +  +GM  
Sbjct: 290 INMYSKFGRLQDAQRVFDG--MEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGM-R 346

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
            +  + V L+++F  L      R V   +          C W+E++ V+    V   ++L
Sbjct: 347 PDLLTVVSLASIFGQLSDRRIGRAVHGFVVR--------CRWLEVDIVIGNALVNMYAKL 398


>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
          Length = 1301

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 194/542 (35%), Positives = 291/542 (53%), Gaps = 64/542 (11%)

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           Q H L  K+    D++  N  I    R G +  ARQ+FD+M  RD+VS+NS+I GY K+G
Sbjct: 33  QFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIITGYWKNG 92

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
             + ++ LF  MP +  N++SWNS++ G  +    +  AWQ F+ MP+R+  SWN+M+ G
Sbjct: 93  CFDESKRLFGLMPTK--NVVSWNSMIAGCIE-DERIDEAWQYFQAMPQRNTASWNAMISG 149

Query: 260 CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIAR------------------ 301
            V+  ++++A  LF++MP+R+V+S+  M+DGYAK+G ++ AR                  
Sbjct: 150 LVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMI 209

Query: 302 -------------RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE------- 341
                         LF++MP +++VA  AM+ GY + G + KA  +FD + C        
Sbjct: 210 SGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNA 269

Query: 342 --------------LYLH---------PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
                         L LH         PD ++L+ VL+A + L  + +G   H  + K  
Sbjct: 270 MITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSG 329

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
           +        ALI MY KCGSI ++   F QI+   V  WNAMI   A HG  + A     
Sbjct: 330 YESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFG 389

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
           EM    +EPD ITF  LL+AC HAG V E L  F  M   +K+    +H+ C+VDIL R 
Sbjct: 390 EMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIXSYKIVXRPEHFACLVDILSRG 449

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           G +E A  +I++MP E +  IW  LL+AC  + N+ +GE  AK ++ ++  NS +YV+LS
Sbjct: 450 GQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLS 509

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           N++A  GMW +  RVR +M+E+ +KK P  SW+E++  VH F   D S  ++  I   L 
Sbjct: 510 NIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHFFLGDDASHPEIHRIRLELK 569

Query: 619 NM 620
            M
Sbjct: 570 GM 571



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 107/232 (46%), Gaps = 35/232 (15%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D   WNA+I  Y+     +EAL +   ML  G+  D  +   VL ACS L  ++EG + 
Sbjct: 262 RDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKT 321

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H L+ K  + S + + N LI++Y +CG +  +   F ++   D VS+N+MI  + + G  
Sbjct: 322 HVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHG-- 379

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
                              ++  L  + +++S             E D I++ S+L  C 
Sbjct: 380 ------------------FYDRALASFGEMRSN----------RVEPDGITFLSLLSACG 411

Query: 262 KCGKMDDAQALFDKMPKRDVV-----SWANMIDGYAKLGRVDIARRLFDEMP 308
             GK+ ++   F+ M     +      +A ++D  ++ G+V+ A ++  EMP
Sbjct: 412 HAGKVHESLNWFNSMIXSYKIVXRPEHFACLVDILSRGGQVEKAYKIIQEMP 463


>gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 613

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 205/599 (34%), Positives = 344/599 (57%), Gaps = 22/599 (3%)

Query: 37  MITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSH 96
           M+ TG   +  L T L++ F+++    L   +  +F +        D FL+N II+ +S 
Sbjct: 1   MVVTGRHHDPFLMTPLISFFAAANSNAL-HHSHLLFTQI----PNPDLFLFNLIIRAFSL 55

Query: 97  GLDPKEALVMFCLMLDNGVSV--DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDL 154
              P  AL ++  ML +   +  D F+   +LK+C++L L   GLQ+H  + K  F S++
Sbjct: 56  SQTPHNALSLYKKMLSSSPPIFPDTFTFPFLLKSCAKLSLPRLGLQVHTHVFKSGFESNV 115

Query: 155 FLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM--P 212
           F+ N L+ +Y   G    A ++FD+  +RDSVSYN++I+G V++G    +  +F  M   
Sbjct: 116 FVVNALLQVYFVFGDARNACRVFDESPVRDSVSYNTVINGLVRAGRAGCSMRIFAEMRGG 175

Query: 213 IRERNLISWNSVLNGYAQLKS---GLQFAWQIFEKMP---ERDLISWNSMLHGCVKCGKM 266
             E +  ++ ++L+  + L+    G      ++ K+    E +L+  N+++    KCG +
Sbjct: 176 FVEPDEYTFVALLSACSLLEDRGIGRVVHGLVYRKLGCFGENELLV-NALVDMYAKCGCL 234

Query: 267 DDAQALF-DKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
           + A+ +  +   K  V +W +++  YA  G V++ARRLFD+M +RDVV+  AM+ GY   
Sbjct: 235 EVAERVVRNGNGKSGVAAWTSLVSAYALRGEVEVARRLFDQMGERDVVSWTAMISGYCHA 294

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
           G   +ALE+F  ++ +L + PD+  +V  LSA A+LG ++ G  IH   ++D +      
Sbjct: 295 GCFQEALELFVELE-DLGMEPDEVVVVAALSACARLGALELGRRIHHKYDRDSWQCGHNR 353

Query: 386 GV--ALIDMYSKCGSIENAIKVFEQIEDG--SVDHWNAMINGLAIHGLGELAFDLLMEME 441
           G   A++DMY+KCGSIE A+ VF +  D   +   +N++++GLA HG GE A  L  EM 
Sbjct: 354 GFTCAVVDMYAKCGSIEAALDVFLKTSDDMKTTFLYNSIMSGLAHHGRGEHAMALFEEMR 413

Query: 442 RLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHI 501
            + +EPD++T+  LL AC H+GLV  G   FE M   + + P+++HYGCMVD+LGRAGH+
Sbjct: 414 LVGLEPDEVTYVALLCACGHSGLVDHGKRLFESMLSEYGVNPQMEHYGCMVDLLGRAGHL 473

Query: 502 EAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF 561
             A  LI++MP + N VIWR LLSAC+   ++ +    ++ L+ M++ + + YV+LSNM 
Sbjct: 474 NEAYLLIQNMPFKANAVIWRALLSACKVDGDVELARLASQELLAMENDHGARYVMLSNML 533

Query: 562 AGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
             +   ++A  VR  +    ++K PG S +E+ G +H+F   DKS  + +   +ML ++
Sbjct: 534 TLMDKHDEAASVRRAIDNVGIQKPPGWSHVEMNGTLHKFLAGDKSHPEAKATEFMLRDI 592


>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
 gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
 gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 570

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 193/530 (36%), Positives = 308/530 (58%), Gaps = 13/530 (2%)

Query: 85  FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGL 144
            ++N ++K+ + G    + L +F  +   G+  D F+  +VLK+  RL  + EG ++HG 
Sbjct: 12  LMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGY 71

Query: 145 LRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESA 204
             K     D ++ N L+ +Y   G +E   ++FD+M  RD VS+N +I  YV +G  E A
Sbjct: 72  AVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDA 131

Query: 205 RELFDSMPIRERNLI----SWNSVLNGYAQLKSGLQFAWQIFEKMP---ERDLISWNSML 257
             +F  M  +E NL     +  S L+  + LK+ L+   +I+  +    E  +   N+++
Sbjct: 132 IGVFKRMS-QESNLKFDEGTIVSTLSACSALKN-LEIGERIYRFVVTEFEMSVRIGNALV 189

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNA 317
               KCG +D A+A+FD M  ++V  W +M+ GY   GR+D AR LF+  P +DVV   A
Sbjct: 190 DMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTA 249

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           MM GYV+     +ALE+F  MQ    + PD+  LV +L+  AQ G +++G  IH Y+ ++
Sbjct: 250 MMNGYVQFNRFDEALELFRCMQTA-GIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINEN 308

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLL 437
           + +++   G AL+DMY+KCG IE A++VF +I++     W ++I GLA++G+   A DL 
Sbjct: 309 RVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLY 368

Query: 438 MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
            EME + +  D ITF  +L AC H G V EG   F  M   H ++P+ +H  C++D+L R
Sbjct: 369 YEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCR 428

Query: 498 AGHIEAARNLIEDMPMEPNDV---IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           AG ++ A  LI+ M  E ++    ++ +LLSA RNY N+ + E VA+ L  ++ S+SS++
Sbjct: 429 AGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAH 488

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
            LL++++A    W D   VR  MK+  ++K PGCS IE++GV HEF V D
Sbjct: 489 TLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVGHEFIVGD 538


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 193/512 (37%), Positives = 286/512 (55%), Gaps = 36/512 (7%)

Query: 110 MLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY 169
           ML N V   K S SL+L++C+  G  + G   H  + K+ F  D+ LQ  L+  Y + G 
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA 229
           L+ A+++F  M  RD V+ N+MI    K G +E AR LFD+M                  
Sbjct: 61  LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMT----------------- 103

Query: 230 QLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMID 289
                            ER+  SWNSM+    K G ++ A+ +FD  P +DVVSW  +ID
Sbjct: 104 -----------------ERNSCSWNSMITCYCKLGDINSARLMFDCNPVKDVVSWNAIID 146

Query: 290 GYAKLGRVDIARRLFDEM-PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD 348
           GY K  ++  A+ LF  M   R+ V  N M+  YV+ G    A+ +F  MQ E  + P +
Sbjct: 147 GYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSE-NVKPTE 205

Query: 349 ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ 408
            ++V +LSA A LG +D G  IH Y+   +  ++   G ALIDMY KCG++E AI VF  
Sbjct: 206 VTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHG 265

Query: 409 IEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
           +   ++  WN++I GL ++G GE A    + ME+  I+PD +TF G+L+ C+H+GL+  G
Sbjct: 266 LSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAG 325

Query: 469 LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACR 528
              F  M  ++ LEP ++HYGCMVD+LGRAG+++ A  LI  MPM+PN ++  +LL AC+
Sbjct: 326 QRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQ 385

Query: 529 NYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGC 588
            +++  +GE V + L+ +D  +  +YV LSN++A L  W+D    R +M +R + K PGC
Sbjct: 386 IHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGC 445

Query: 589 SWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           S IE+  +VHEF   D S  Q   I   LD +
Sbjct: 446 SSIEVNNIVHEFVAGDTSHPQFTQINAFLDEI 477



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 35/234 (14%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           ++   WN +I  Y    +   A+ MF  M    V   + +   +L AC+ LG ++ G  I
Sbjct: 168 RNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWI 227

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           HG +R      D+ L N LI +Y +CG LE A  +F  +  ++   +NS+I G   +G  
Sbjct: 228 HGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRG 287

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
           E A   F  M                    K G++            D +++  +L GC 
Sbjct: 288 EEAIAAFIVME-------------------KEGIK-----------PDGVTFVGILSGCS 317

Query: 262 KCGKMDDAQALFDKM-----PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
             G +   Q  F +M      +  V  +  M+D   + G +  A  L   MP +
Sbjct: 318 HSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMK 371



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 7/116 (6%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +K+ F WN+II         +EA+  F +M   G+  D  +   +L  CS  GL+  G +
Sbjct: 268 RKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQR 327

Query: 141 IHGLLRKVAFGSDLFLQN--CLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
               +  V +G +  +++  C++ L  R GYL+ A +L   M ++     NSM+ G
Sbjct: 328 YFSEMLGV-YGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKP----NSMVLG 378


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 215/681 (31%), Positives = 339/681 (49%), Gaps = 86/681 (12%)

Query: 18   LLLLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
            L +L  C   K L     IH+ +   G   +  +   L++ ++   C  L + AR +F+ 
Sbjct: 334  LSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYAR--CGDLPK-ARELFYT 390

Query: 75   YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
                  K+D   WNAII  Y+   D  EA+ ++  M   GV   + +   +L AC+    
Sbjct: 391  M----PKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSA 446

Query: 135  IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
              +G  IH  + +    S+  L N L+++Y RCG L  A+ +F+    RD +S+NSMI G
Sbjct: 447  YADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAG 506

Query: 195  YVKSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQ--------------LKSGLQF- 237
            + + G+ E+A +LF  M   E   + I++ SVL+G                  +SGLQ  
Sbjct: 507  HAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLD 566

Query: 238  -------------------AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK 278
                               A  +F  +  RD++SW +M+ GC   G+   A  LF +M  
Sbjct: 567  VNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQN 626

Query: 279  --------------------------RDVVSWA-------------NMIDGYAKLGRVDI 299
                                      + V+++               +I  Y+K G +  
Sbjct: 627  EGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTD 686

Query: 300  ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
            AR +FD+MP RD+V+ N ++ GY +NG    A+E    MQ E  + P+  S V +L+A +
Sbjct: 687  AREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQ-EQDVVPNKFSFVSLLNACS 745

Query: 360  QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
                +++G  +H  + K +   + + G ALI MY+KCGS   A +VF+ I + +V  WNA
Sbjct: 746  SFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNA 805

Query: 420  MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
            MIN  A HGL   A      ME+  I+PD  TFT +L+AC HAGLV EG   F  M   +
Sbjct: 806  MINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEY 865

Query: 480  KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPV 539
             + P ++HYGC+V +LGRA   + A  LI  MP  P+  +W TLL ACR + N+ + E  
Sbjct: 866  GVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHA 925

Query: 540  AKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHE 599
            A + + +++ N + Y+LLSN++A  G W+D  ++R +M+ R ++K PG SWIE++ ++HE
Sbjct: 926  ANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHE 985

Query: 600  FFVRDKSRLQVRDIYYMLDNM 620
            F   D+S  +  +IY  L  +
Sbjct: 986  FIAADRSHPETAEIYAELKRL 1006



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 141/513 (27%), Positives = 245/513 (47%), Gaps = 60/513 (11%)

Query: 27  LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFL 86
           L +  +IH+++I  G+ ++  +   L++ +    C  L   AR +F    A    +D   
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGK--CGDLPR-ARQVF----AGISPRDVVS 196

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           +N ++  Y+     KE L +F  M   G+S DK +   +L A +   +++EG +IH L  
Sbjct: 197 YNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTV 256

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG-NIESAR 205
           +    SD+ +   L+++ VRCG ++ A+Q F     RD V YN++I    + G N+E+  
Sbjct: 257 EEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFE 316

Query: 206 ELF----DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
           + +    D + +   N  ++ S+LN  +  K+                 +    ++H  +
Sbjct: 317 QYYRMRSDGVAL---NRTTYLSILNACSTSKA-----------------LEAGKLIHSHI 356

Query: 262 KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
                +D  +        DV     +I  YA+ G +  AR LF  MPKRD+++ NA++ G
Sbjct: 357 S----EDGHS-------SDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAG 405

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
           Y R     +A+ ++  MQ E  + P   + + +LSA A       G  IH  + +     
Sbjct: 406 YARREDRGEAMRLYKQMQSE-GVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKS 464

Query: 382 NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEME 441
           NG    AL++MY +CGS+  A  VFE  +   V  WN+MI G A HG  E A+ L  EM+
Sbjct: 465 NGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQ 524

Query: 442 RLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH------KLEPELQHYGCMVDIL 495
              +EPD+ITF  +L+ C +     E L   EL ++IH       L+ ++     ++++ 
Sbjct: 525 NEELEPDNITFASVLSGCKNP----EAL---ELGKQIHGRITESGLQLDVNLGNALINMY 577

Query: 496 GRAGHIEAARNLIEDMPMEPNDVI-WRTLLSAC 527
            R G ++ ARN+     ++  DV+ W  ++  C
Sbjct: 578 IRCGSLQDARNVFHS--LQHRDVMSWTAMIGGC 608



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 108/430 (25%), Positives = 199/430 (46%), Gaps = 51/430 (11%)

Query: 9   QPCNSTQSTLLL-LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF 67
           +P N T +++L   +  + L    QIH R+  +G   + +L   L+  +    C  L + 
Sbjct: 529 EPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIR--CGSLQD- 585

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           AR +F   H+  + +D   W A+I   +   +  +A+ +F  M + G    K + S +LK
Sbjct: 586 ARNVF---HSL-QHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILK 641

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
            C+    ++EG ++   +    +  D  + N LIS Y + G +  AR++FDKM  RD VS
Sbjct: 642 VCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVS 701

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRE--RNLISWNSVLNG---YAQLKSGLQFAWQIF 242
           +N +I GY ++G  ++A E    M  ++   N  S+ S+LN    ++ L+ G +   +I 
Sbjct: 702 WNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIV 761

Query: 243 EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
           ++  + D+    +++    KCG   +AQ +FD + +++VV+W  MI+ YA+         
Sbjct: 762 KRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQ--------- 812

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
                                 +G + KAL  F+ M+ E  + PD ++   +LSA    G
Sbjct: 813 ----------------------HGLASKALGFFNCMEKE-GIKPDGSTFTSILSACNHAG 849

Query: 363 HIDKGVAIHRYLEKDQFSLNG-KHGVALIDMYSKCGSIENAIKVFEQI---EDGSVDHWN 418
            + +G  I   +E +   L   +H   L+ +  +    + A  +  Q+    D +V  W 
Sbjct: 850 LVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAV--WE 907

Query: 419 AMINGLAIHG 428
            ++    IHG
Sbjct: 908 TLLGACRIHG 917


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 198/618 (32%), Positives = 343/618 (55%), Gaps = 26/618 (4%)

Query: 12  NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
           ++  + L  L  CK+LN + Q+HA ++       T +  KL +   +   +  +    Y 
Sbjct: 13  SAANTILEKLSFCKSLNHIKQLHAHIL------RTVINHKLNSFLFNLSFSSSSINLSYA 66

Query: 72  FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
              + +     +  ++N++++  S   +P+  ++ +  +   G   D+ S   +LKA S+
Sbjct: 67  LNLFSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSK 126

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
           +  + EG+++HG   K+A  SD F++  L+ +Y  CG + +AR +FD+M  RD V++N+M
Sbjct: 127 VSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTM 186

Query: 192 IDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQL--KSG-LQFAWQIFEKMPER 248
           I+ Y + G ++ A +LF+ M  ++ N++    +L        ++G +++   I++ + E 
Sbjct: 187 IERYCRFGLLDEAFKLFEEM--KDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIEN 244

Query: 249 DLISWNSMLHGCVK----CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
           D+     +L   V      G MD A   F KM  R++     M+ GY+K GR+D AR +F
Sbjct: 245 DVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIF 304

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
           D+   +D+V    M+  Y  + +  +AL +F+ M C   + PD  +++ V+SA   LG +
Sbjct: 305 DQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCS-GIKPDVVTMLSVISACVNLGTL 363

Query: 365 DKGVAIHRYLEKDQFSLNGKHGV-----ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
           DK   +HRY       LNG   V     ALI+MY+KCG ++ A  VFE++   +V  W++
Sbjct: 364 DKAKWVHRYTH-----LNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSS 418

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           MIN  A+HG    +  L  +M++ ++EP+++TF G+L  C+H+GLV+EG   F  M   +
Sbjct: 419 MINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEY 478

Query: 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPV 539
            + P+++HYGCMVD+ GRA  +  A  +IE MPM PN VIW +L+SACR +  L +GE  
Sbjct: 479 NITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELA 538

Query: 540 AKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHE 599
           AK ++ ++  +  + VL+SN++A    W+  R +R +M+++ + K  G S I+L G  HE
Sbjct: 539 AKRILKLEPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHE 598

Query: 600 FFVRDKSRLQVRDIYYML 617
           F + DK   Q  +IY  L
Sbjct: 599 FLIGDKRHKQSNEIYTKL 616


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 191/582 (32%), Positives = 330/582 (56%), Gaps = 45/582 (7%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D   W  II  Y+     ++A+ +F  M+ + V   +F+ + VL +C+  G    G ++
Sbjct: 70  RDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKV 129

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H  + K+   + + + N L+++Y + G L+ A+ +FD+M +R++ S+N+MI  ++  G +
Sbjct: 130 HSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRV 189

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQL---KSGLQFAWQIFEKM---PER------- 248
           + A   F+ +   ER+++SWNS++ G  Q       LQF   I +     P+R       
Sbjct: 190 DLALAQFELLS--ERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASAL 247

Query: 249 ------DLISWNSMLHGCV--------------------KCGKMDDAQALFDK--MPKRD 280
                 + +S+   +HG +                    K G ++ A+ + ++  +   D
Sbjct: 248 SACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLD 307

Query: 281 VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQC 340
           V+++  +++GY KLG +  AR++F+ +   DVVA  AM+ GYV+NG +  A+E+F  M  
Sbjct: 308 VIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVS 367

Query: 341 ELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE 400
           E    P+  +L  +LSA + +  ++ G  IH    +   +L+   G AL  MY+K GSI 
Sbjct: 368 E-GPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSIN 426

Query: 401 NAIKVFEQI-EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
            A KVF  + ++     W +MI  LA HGLGE A +L  +M  L I+PD IT+ G+L+AC
Sbjct: 427 GARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSAC 486

Query: 460 AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI 519
            H GLV++G   F+LM+ +HK++P L HY CMVD+ GRAG ++ A   +E+MPMEP+ + 
Sbjct: 487 THGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIA 546

Query: 520 WRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579
           W +LLS+C+ Y+N+++ +  A+ L+ ++ +NS +Y  L+N+++  G W+DA ++R +MK 
Sbjct: 547 WGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKA 606

Query: 580 RNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMW 621
           R +KK  G SW++++   H F V D    Q  +IY M+D +W
Sbjct: 607 RGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIW 648



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 128/475 (26%), Positives = 220/475 (46%), Gaps = 82/475 (17%)

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           K+     ++L N L++LY + G+   A  LF++M ++ + S+N+++ GY K G +E A +
Sbjct: 3   KLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQ 62

Query: 207 LFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM---------- 256
           +FD +P+R+   +SW +++ GY Q+    + A +IF  M +  ++               
Sbjct: 63  VFDLIPVRDS--VSWTTIIVGYNQMGR-FEDAIKIFVDMVKDKVLPTQFTLTNVLASCAA 119

Query: 257 ------------------LHGCV-----------KCGKMDDAQALFDKMPKRDVVSWANM 287
                             LH CV           K G +  A+ +FD+M  R+  SW  M
Sbjct: 120 TGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAM 179

Query: 288 IDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD 347
           I  +   GRVD+A   F+ + +RD+V+ N+M+ G  ++G+  +AL+ F ++  +  L PD
Sbjct: 180 ISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPD 239

Query: 348 DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFE 407
             SL   LSA A L  +  G  IH Y+ +  F  +G  G ALI MY+K G +E A ++ E
Sbjct: 240 RFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIE 299

Query: 408 Q--IEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLV 465
           Q  I D  V  + A++NG    G    A  +   ++    +PD + +T ++      G V
Sbjct: 300 QSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLK----DPDVVAWTAMI-----VGYV 350

Query: 466 KEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLS 525
           + GL                               IE  + ++ + P  PN      +LS
Sbjct: 351 QNGL---------------------------NNDAIEVFKTMVSEGP-RPNSFTLAAMLS 382

Query: 526 ACRNYENLNVGEPVAKHLIGMDSSNSSSYV-LLSNMFAGLGMWNDARRVRSMMKE 579
           A  +  +LN G+ +    I    + S S    L+ M+A  G  N AR+V +++++
Sbjct: 383 ASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQ 437



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 92/195 (47%), Gaps = 10/195 (5%)

Query: 26  TLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPF 85
           +LN   QIHA  I +G   +  +   L   ++ +        AR +F   +  R+ +D  
Sbjct: 389 SLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSI---NGARKVF---NLLRQNRDTV 442

Query: 86  LWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGL 144
            W ++I   + HGL  +EA+ +F  ML  G+  D  +   VL AC+  GL+E+G     L
Sbjct: 443 SWTSMIMALAQHGLG-EEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDL 501

Query: 145 LRKV-AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMIDGYVKSGNIE 202
           ++ V      L    C++ L+ R G L+ A +  + M +  D +++ S++       N++
Sbjct: 502 MKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVD 561

Query: 203 SARELFDSMPIRERN 217
            A+   + + + E N
Sbjct: 562 LAKVAAERLLLIEPN 576


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 185/523 (35%), Positives = 296/523 (56%), Gaps = 43/523 (8%)

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGY---LEFARQLFDKMGIRDSVSYNSMIDGY 195
           +QIH L+ K +   + F+   L+     C     L +AR +FD++   D+  +N+MI  Y
Sbjct: 20  IQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTMIRAY 79

Query: 196 VKSGNIESARELFDSMPIRE--------------------------------------RN 217
           + S N + +  LF  M  +E                                       +
Sbjct: 80  LNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSD 139

Query: 218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP 277
           L    +++  YA+    ++ A  I ++M   DL+ +N +L   V+ G+++ A  LFD+MP
Sbjct: 140 LFVETALIEMYAKF-GDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMP 198

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
           +RD+VSW  MI G+A LG V  A++LFD   +RD+++ ++M+  Y +   S +AL +F  
Sbjct: 199 ERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHE 258

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
           MQ    L PD  ++V VLSA   +G +  G  IH  +E+++  ++ K G +L+DMY+KCG
Sbjct: 259 MQLANVL-PDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCG 317

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            I+N+++VF  + +  V  W+AMI GLA HG GELA D   +M    I+P+D+TF G+L+
Sbjct: 318 DIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLS 377

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
           AC+H GLV EG   F  M +++ + P+++HYGC+VDILGRAG ++ A  LI+ MP  P+ 
Sbjct: 378 ACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDA 437

Query: 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
           ++WR LL ACR Y+N+ + E    +L+ ++     +YVLLSN+++    W+    VR MM
Sbjct: 438 IVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMM 497

Query: 578 KERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           K  N++K+PG S IE++  VHEF   D+S  + + I  ML  +
Sbjct: 498 KNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEI 540



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 143/478 (29%), Positives = 245/478 (51%), Gaps = 58/478 (12%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVAS-FSSSPCTPLTEFARYIFF 73
           +  + LL+    LN + QIHA +I T    N  +  KL+   F+ S    L  +AR +F 
Sbjct: 4   KKVMSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLL-YARSVFD 62

Query: 74  KYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG-VSVDKFSASLVLKACSRL 132
           +  +     D F+WN +I+ Y +  +P+E++ +F  M     + +D +S SLV++AC RL
Sbjct: 63  EIPS----PDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRL 118

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
                G ++H  + K+  GSDLF++  LI +Y + G +E AR + D+M   D V YN ++
Sbjct: 119 KDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLL 178

Query: 193 DGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLIS 252
             YV+ G I  A +LFD MP  ER+L+SWN++++G+A L   +  A ++F++  ERDLIS
Sbjct: 179 AEYVRVGEINLAHDLFDRMP--ERDLVSWNTMIHGHASL-GDVGTAKKLFDRTCERDLIS 235

Query: 253 WNSMLHGCVKCGKMDDAQALFDKM------PKR--------------------------- 279
           W+SM+    K  + ++A  LF +M      P +                           
Sbjct: 236 WSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIE 295

Query: 280 ------DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE 333
                 D+    +++D YAK G +D + R+F+ M  RDV A +AM+ G   +G+   AL+
Sbjct: 296 RNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALD 355

Query: 334 IFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD-QFSLNGKHGVALIDM 392
            F  M  E  + P+D + + VLSA + +G +D+G      + K    S   +H   ++D+
Sbjct: 356 HFSKMISE-DIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDI 414

Query: 393 YSKCGSIENAIKVFEQI---EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP 447
             + G ++ A+++ + +    D  V  W A++    I+   E+A +  + +  L +EP
Sbjct: 415 LGRAGRLQEAMELIKSMPFAPDAIV--WRALLGACRIYKNVEIAEEATVNL--LELEP 468


>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
 gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 190/536 (35%), Positives = 307/536 (57%), Gaps = 39/536 (7%)

Query: 118 DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLF 177
           D  + + V+    + GLI +  +   L  +V    D+     ++S YVR   +E A +LF
Sbjct: 5   DVVTWTAVISGYIKCGLIVDARR---LFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERLF 61

Query: 178 DKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF 237
           + M +++ VS+N+MIDGY K+  ++ A E+F+ M   ERN++SWN+V+    Q    ++ 
Sbjct: 62  EVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERM--HERNMVSWNAVIAALVQCGR-VEE 118

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
           A + F++MP+RD+ISW +M+ G  + G++D+A+ +FD+MP+R+VVSW  M+ GYAK  R+
Sbjct: 119 ARRRFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMPERNVVSWNAMVTGYAKNMRL 178

Query: 298 D-------------------------------IARRLFDEMPKRDVVACNAMMGGYVRNG 326
           D                                AR++F+EMP+++VV+   M+ GYV+ G
Sbjct: 179 DEAFDLFERMPERNLSSWNTMITGFIQNGELAWARKVFNEMPEKNVVSWTTMITGYVQEG 238

Query: 327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG 386
            S  AL++F  M  +    P++ + V VL A + +  + +G  +H  + K  +       
Sbjct: 239 ESESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVHLLISKSVYQDRTFVA 298

Query: 387 VALIDMYSKCGSIENAIKVFEQIEDGSVDH--WNAMINGLAIHGLGELAFDLLMEMERLS 444
            AL++MYSKCG +  A K+F+ +     D   WN MI   A HG G  A +L  +M+ L 
Sbjct: 299 SALLNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLG 358

Query: 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504
            +P+D+++  LL+AC+HAGLV EGL  F+ + R + ++    H+ C+VD+ GRAG ++ A
Sbjct: 359 FKPNDVSYVELLSACSHAGLVDEGLNYFDELGRDNSIQLREDHHACLVDLCGRAGRLKEA 418

Query: 505 RNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL 564
            + I+ +  + +  IW  LL+ C  + +L +G+  AK L   D  N+ +Y+LLSN++A  
Sbjct: 419 YDFIKQLGTKASSSIWGGLLAGCNAHGDLEIGQLAAKELEKEDPENAGTYLLLSNIYASG 478

Query: 565 GMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
             W +A RVR  MKE+ LKK PGCSWIE+   VH F  RDKS  Q   IY ++ ++
Sbjct: 479 RKWREASRVRLKMKEKGLKKQPGCSWIEVGNRVHVFLARDKSHYQSNLIYSLVHDI 534



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 174/350 (49%), Gaps = 49/350 (14%)

Query: 213 IRERNLISWNSVLNGYAQLKSGLQF-AWQIFEKMPE-RDLISWNSMLHGCVKCGKMDDAQ 270
           + ER++++W +V++GY  +K GL   A ++F+++   +D+++W +ML G V+  ++++A+
Sbjct: 1   MHERDVVTWTAVISGY--IKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAE 58

Query: 271 ALFDKMPKRDVVSWANMIDGYAK-------------------------------LGRVDI 299
            LF+ MP ++VVSW  MIDGY K                                GRV+ 
Sbjct: 59  RLFEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQCGRVEE 118

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           ARR FDEMPKRDV++   M+ G  R+G   +A ++FD M        +  S   +++  A
Sbjct: 119 ARRRFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMP-----ERNVVSWNAMVTGYA 173

Query: 360 QLGHIDKGVAI-HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWN 418
           +   +D+   +  R  E++  S N      +I  + + G +  A KVF ++ + +V  W 
Sbjct: 174 KNMRLDEAFDLFERMPERNLSSWN-----TMITGFIQNGELAWARKVFNEMPEKNVVSWT 228

Query: 419 AMINGLAIHGLGELAFDLLMEM-ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
            MI G    G  E A  + +EM +     P++ TF  +L AC+    + EG     L+ +
Sbjct: 229 TMITGYVQEGESESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVHLLISK 288

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND-VIWRTLLSA 526
               +        ++++  + G +  AR + +D+ +   D V+W  +++A
Sbjct: 289 -SVYQDRTFVASALLNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAA 337



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 174/341 (51%), Gaps = 36/341 (10%)

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK-RDVVSWANMIDGYAKLGRVDIARRL 303
           M ERD+++W +++ G +KCG + DA+ LFD++   +DVV+W  M+ GY +L R++ A RL
Sbjct: 1   MHERDVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERL 60

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           F+ MP ++VV+ N M+ GY +N    KA+E+F+ M        +  S   V++A+ Q G 
Sbjct: 61  FEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMH-----ERNMVSWNAVIAALVQCGR 115

Query: 364 IDKGVAIHRYLE---KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
           +++  A  R+ E   +D  S        ++   ++ G ++ A KVF+++ + +V  WNAM
Sbjct: 116 VEE--ARRRFDEMPKRDVISW-----TTMVMGLARSGRVDEARKVFDRMPERNVVSWNAM 168

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           + G A +   + AFDL   M   ++   +   T         G ++ G L +   R++  
Sbjct: 169 VTGYAKNMRLDEAFDLFERMPERNLSSWNTMIT---------GFIQNGELAW--ARKVFN 217

Query: 481 LEPE--LQHYGCMVDILGRAGHIEAARN----LIEDMPMEPNDVIWRTLLSACRNYENLN 534
             PE  +  +  M+    + G  E+A      +I+D    PN+  +  +L AC +   L 
Sbjct: 218 EMPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLG 277

Query: 535 VGEPVAKHLIGMDSSNSSSYV--LLSNMFAGLGMWNDARRV 573
            G+ V   LI        ++V   L NM++  G  + AR++
Sbjct: 278 EGQQV-HLLISKSVYQDRTFVASALLNMYSKCGELSIARKI 317


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 211/601 (35%), Positives = 329/601 (54%), Gaps = 43/601 (7%)

Query: 23  KCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKK 82
           KC  L+D  ++  RM      +NT     L++  + S    L E AR           + 
Sbjct: 62  KCDCLDDARKLFDRMPQ----RNTFTWNSLISVLTKSGF--LDEAARLF-----GSMPEP 110

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           D   WN+++  ++     +E+L  F  M      ++++S    L AC+ L  +  G Q+H
Sbjct: 111 DQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVH 170

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
            L+ K  + +D+++ + LI +Y +CG +  A ++F  M  R+ V++NS+I  Y ++G   
Sbjct: 171 ALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPAS 230

Query: 203 SARELF-----DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERD-LISWNSM 256
            A E+F       +   E  L S  S       LK GLQ   ++ +    RD L+  N++
Sbjct: 231 EALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNAL 290

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
           +    KC K+++A+ +FD+M  R+VVS  +M+ GYA+   V  AR +F +M +R+VV+ N
Sbjct: 291 VDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWN 350

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
           A++ GY +NG + +AL +F  ++ E            +       G++         L+ 
Sbjct: 351 ALIAGYTQNGENEEALRLFRLLKRE-----------SIWPTHYTFGNL---------LKS 390

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
           D F      G +LIDMY KCGSIE+  +VFE++++     WNA+I G A +G G  A  +
Sbjct: 391 DIFV-----GNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQI 445

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
             +M     +PD +T  G+L AC+HAGLV+EG   F  M   H L P   HY CMVD+LG
Sbjct: 446 FRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE-HGLIPLKDHYTCMVDLLG 504

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556
           RAG +  A+NLIE MP+ P+ V+W +LL+AC+ + N+ +G+  A+ L+ +D  NS  YVL
Sbjct: 505 RAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVL 564

Query: 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYM 616
           LSNM+A LG W D  RVR +M+++ + K PGCSWIE+E  VH F V+DKS    + IY +
Sbjct: 565 LSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSV 624

Query: 617 L 617
           L
Sbjct: 625 L 625


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 221/664 (33%), Positives = 341/664 (51%), Gaps = 98/664 (14%)

Query: 20  LLRKC---KTLNDVNQIHARMITTGFIKNT---HLTTKLVASFSSSPCTPLTEFARYIFF 73
           LL++C   K++ +  QIHA  IT G + +    HL + L A+++   C P    AR +F 
Sbjct: 24  LLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAP---HARKLF- 79

Query: 74  KYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVS-VDKFSASLVLKACS 130
                 E ++P  F WNA+I+ Y++     +AL +F  ML +G    D ++   V+KAC 
Sbjct: 80  -----DELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACG 134

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
              L E G  IH       F SD F+QN L+++Y+ CG +E AR++FD M  R  VS+N+
Sbjct: 135 DYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNT 194

Query: 191 MIDGYVKSGNIESARELFDSM----------------PI-----------RERNLIS--- 220
           MI+GY K+G ++ A  +FD M                P+           R   L+    
Sbjct: 195 MINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKN 254

Query: 221 -------WNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALF 273
                  WNS+L+ YA+    +  A  IF +M +RD++SW +M++G +  G    A  L 
Sbjct: 255 LGEDISVWNSLLDMYAKC-GNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLC 313

Query: 274 DKMP---------------------------------------KRDVVSWANMIDGYAKL 294
             M                                        + +V+    +ID YAK 
Sbjct: 314 QMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKC 373

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
             V+++ R+F +  K+     NA++ G + NG S KA+E+F  M  E  + P+DA+L  +
Sbjct: 374 NNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEA-VDPNDATLNSL 432

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI--EDG 412
           L A A L  + +   +H YL +  F    +    LID+YSKCGS+E+A  +F  I  +D 
Sbjct: 433 LPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDK 492

Query: 413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCF 472
            +  W+A+I G  +HG GE A  L  +M +  ++P++ITFT +L+AC+HAGLV EGL  F
Sbjct: 493 DIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLF 552

Query: 473 ELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYEN 532
           + M   +++     HY C++D+LGRAG +E A  LI  M   PN  +W  LL +C  +EN
Sbjct: 553 KFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSCVIHEN 612

Query: 533 LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           + +GE  AK L  ++  N+ +YVLL+N+++ +G W DA  VR MM    L+K P  S IE
Sbjct: 613 VELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTPAHSLIE 672

Query: 593 LEGV 596
           +  +
Sbjct: 673 VRNI 676



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/445 (23%), Positives = 201/445 (45%), Gaps = 55/445 (12%)

Query: 11  CNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY 70
           C +  S L +    K L    ++HA +      ++  +   L+  ++   C  + E A+ 
Sbjct: 224 CATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAK--CGNMDE-AQM 280

Query: 71  IFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS 130
           IF++     +K+D   W  ++  Y    D + AL++  +M    V  +  + + VL AC+
Sbjct: 281 IFYEM----DKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACA 336

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
            L  ++ G  +HG   +    S++ ++  LI +Y +C  +  + ++F K   + +  +N+
Sbjct: 337 SLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNA 396

Query: 191 MIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER 248
           +I G + +G    A ELF  M +   + N  + NS+L  YA L + LQ A  +   +   
Sbjct: 397 IISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFL-TDLQQARNMHGYLIRS 455

Query: 249 DLIS----WNSMLHGCVKCGKMDDAQALFDKMPK--RDVVSWANMIDGYAKLGRVDIARR 302
             +S       ++    KCG ++ A  +F+ +PK  +D+++W+ +I GY   G  + A  
Sbjct: 456 GFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAIS 515

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           LFD+M +  V                                 P++ +   +L A +  G
Sbjct: 516 LFDQMVQSGV--------------------------------KPNEITFTSILHACSHAG 543

Query: 363 HIDKGVAIHRY-LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH--WNA 419
            +D+G+ + ++ LE +Q SL   H   +ID+  + G +E A ++   +     +H  W A
Sbjct: 544 LVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMA-FRPNHAVWGA 602

Query: 420 MINGLAIH---GLGELAFDLLMEME 441
           ++    IH    LGE+A   L E+E
Sbjct: 603 LLGSCVIHENVELGEVAAKWLFELE 627



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 16/219 (7%)

Query: 10  PCNSTQSTLLLLRKCKT-LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFA 68
           P ++T ++LL      T L     +H  +I +GF+    + T L+  +S   C  L E A
Sbjct: 424 PNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSK--CGSL-ESA 480

Query: 69  RYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA 128
             IF      ++ KD   W+AII  Y      + A+ +F  M+ +GV  ++ + + +L A
Sbjct: 481 HNIFNGIP--KKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHA 538

Query: 129 CSRLGLIEEGLQIHGLL---RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-D 184
           CS  GL++EGL +   +    +++  +D +   C+I L  R G LE A +L   M  R +
Sbjct: 539 CSHAGLVDEGLGLFKFMLEDNQMSLRTDHY--TCVIDLLGRAGRLEEAYELIRTMAFRPN 596

Query: 185 SVSYNSMIDGYVKSGNIE----SARELFDSMPIRERNLI 219
              + +++   V   N+E    +A+ LF+  P    N +
Sbjct: 597 HAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYV 635


>gi|414884999|tpg|DAA61013.1| TPA: hypothetical protein ZEAMMB73_343744 [Zea mays]
          Length = 557

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 173/442 (39%), Positives = 281/442 (63%), Gaps = 5/442 (1%)

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
           SDL L N L+SLY+  G    AR+L   +   D+V++N+++  +++ G + +AR LFD M
Sbjct: 119 SDLRLANSLLSLYLSHGSTASARRLLADIPRPDTVTWNTLLRSFLRMGLLPAARRLFDEM 178

Query: 212 PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQA 271
           P  ER+L+++NS+L+GYA  +  +  A ++F+ MPERD+++WNSML G  + G M+ A+ 
Sbjct: 179 P--ERDLVTYNSMLSGYAA-EGDIANARELFDGMPERDVVTWNSMLAGYAQRGDMESAKR 235

Query: 272 LFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKA 331
           LFD MP RDVVSW +M+DGYA+ G +++ R +FD MP+R  V+ N ++  Y +     + 
Sbjct: 236 LFDVMPVRDVVSWNSMLDGYAQTGDIEMTRMVFDGMPRRSTVSWNVVLALYAKVKDWHEC 295

Query: 332 LEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK--DQFSLNGKHGVAL 389
           L +FD M       P++ + V VL+A   LG +++G  +H  + +  ++   +     A+
Sbjct: 296 LNLFDAMMAVGGSKPNEKTFVSVLTACGHLGDLERGRWVHHLVHESWERLLPDVLLLTAM 355

Query: 390 IDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD 449
           + MY+KCG +  A ++F+ + + SV  WN+MI G  +HG  E A +L MEME+   +P++
Sbjct: 356 MTMYAKCGVMGTAKEIFDLMTERSVASWNSMIIGYGLHGYSEKALELFMEMEKNGPQPNE 415

Query: 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE 509
            TF  +L++CAH GLV EG  CF+ M R + +EP+ +H+GCM+D+LGRAG +  + NLI 
Sbjct: 416 TTFICILSSCAHGGLVLEGWWCFDRMVRFYNIEPKAEHFGCMMDLLGRAGLLRDSENLIN 475

Query: 510 DMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWND 569
           ++  + +  +W  L+SA R  ++  +GE +   LI M  +  SSYVLLSN++A  G W+D
Sbjct: 476 NLQAKVSPALWGALISASRTQDSSKLGEFIGTKLIEMKPTEFSSYVLLSNIYATEGRWDD 535

Query: 570 ARRVRSMMKERNLKKLPGCSWI 591
             +VR +MKE+ ++K  G S +
Sbjct: 536 VEKVRKVMKEKVVEKDVGMSLV 557



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 110/245 (44%), Gaps = 20/245 (8%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMF-CLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           ++    WN ++  Y+   D  E L +F  +M   G   ++ +   VL AC  LG +E G 
Sbjct: 273 RRSTVSWNVVLALYAKVKDWHECLNLFDAMMAVGGSKPNEKTFVSVLTACGHLGDLERGR 332

Query: 140 QIHGLLRKV--AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
            +H L+ +       D+ L   ++++Y +CG +  A+++FD M  R   S+NSMI GY  
Sbjct: 333 WVHHLVHESWERLLPDVLLLTAMMTMYAKCGVMGTAKEIFDLMTERSVASWNSMIIGYGL 392

Query: 198 SGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQF-AWQIFEKMPERDLISWN 254
            G  E A ELF  M     + N  ++  +L+  A    GL    W  F++M     I   
Sbjct: 393 HGYSEKALELFMEMEKNGPQPNETTFICILSSCAH--GGLVLEGWWCFDRMVRFYNIEPK 450

Query: 255 SMLHGCV-----KCGKMDDAQALFDKM-PKRDVVSWANMIDG-----YAKLGRVDIARRL 303
           +   GC+     + G + D++ L + +  K     W  +I        +KLG   I  +L
Sbjct: 451 AEHFGCMMDLLGRAGLLRDSENLINNLQAKVSPALWGALISASRTQDSSKLGEF-IGTKL 509

Query: 304 FDEMP 308
            +  P
Sbjct: 510 IEMKP 514


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 224/692 (32%), Positives = 351/692 (50%), Gaps = 84/692 (12%)

Query: 4   SANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTP 63
           S +Y    NS  S L L  + K+L D  ++H+ +I+ G   +  L  KLV  F    C  
Sbjct: 87  SKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLV--FMYVNCGD 144

Query: 64  LTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSAS 123
           L +  R IF K          FLWN ++  Y+   + +E++ +F  M   GV  + ++ +
Sbjct: 145 LVQ-GRKIFDKIM----NDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFT 199

Query: 124 LVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183
            VLK  + LG ++E  ++HG + K+ FGS+  + N LI+ Y + G +E A  LFD++   
Sbjct: 200 CVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEP 259

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQL---------- 231
           D VS+NSMI+G V +G   +  E+F  M I   E +L +  SVL   A +          
Sbjct: 260 DVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALH 319

Query: 232 -----------------------KSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMD 267
                                  K G L  A ++F KM +  ++SW S++   V+ G   
Sbjct: 320 GFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYS 379

Query: 268 DAQALFDKMPK--------------------------RDVVSWA-------------NMI 288
           DA  LFD+M                            RDV S+               +I
Sbjct: 380 DAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALI 439

Query: 289 DGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD 348
           + YAK G V+ AR +F ++P +D+V+ N M+GGY +N    +ALE+F +MQ +    PDD
Sbjct: 440 NMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQF--KPDD 497

Query: 349 ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ 408
            ++  VL A A L  +DKG  IH ++ +  +  +     AL+DMY+KCG +  A  +F+ 
Sbjct: 498 ITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDM 557

Query: 409 IEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
           I    +  W  MI G  +HG G  A     EM    IEPD+ +F+ +LNAC+H+GL+ EG
Sbjct: 558 IPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEG 617

Query: 469 LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACR 528
              F  MR    +EP+L+HY C+VD+L R G++  A   IE MP++P+  IW  LLS CR
Sbjct: 618 WKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCR 677

Query: 529 NYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGC 588
            + ++ + E VA+H+  ++  N+  YV+L+N++A    W + +++R  M++R  K+ PGC
Sbjct: 678 IHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGC 737

Query: 589 SWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           SWIE+ G  + F   +    Q + I  +L  +
Sbjct: 738 SWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKL 769


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 224/692 (32%), Positives = 351/692 (50%), Gaps = 84/692 (12%)

Query: 4    SANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTP 63
            S +Y    NS  S L L  + K+L D  ++H+ +I+ G   +  L  KLV  F    C  
Sbjct: 362  SKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLV--FMYVNCGD 419

Query: 64   LTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSAS 123
            L +  R IF K          FLWN ++  Y+   + +E++ +F  M   GV  + ++ +
Sbjct: 420  LVQ-GRKIFDKIM----NDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFT 474

Query: 124  LVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183
             VLK  + LG ++E  ++HG + K+ FGS+  + N LI+ Y + G +E A  LFD++   
Sbjct: 475  CVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEP 534

Query: 184  DSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQL---------- 231
            D VS+NSMI+G V +G   +  E+F  M I   E +L +  SVL  +A +          
Sbjct: 535  DVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALH 594

Query: 232  -----------------------KSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMD 267
                                   K G L  A ++F KM +  ++SW S +   V+ G   
Sbjct: 595  GFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYS 654

Query: 268  DAQALFDKMPK--------------------------RDVVSWA-------------NMI 288
            DA  LFD+M                            RDV S+               +I
Sbjct: 655  DAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALI 714

Query: 289  DGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD 348
            + YAK G V+ AR +F ++P +D+V+ N M+GGY +N    +ALE+F +MQ +    PDD
Sbjct: 715  NMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQF--KPDD 772

Query: 349  ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ 408
             ++  VL A A L  +DKG  IH ++ +  +  +     AL+DMY+KCG +  A  +F+ 
Sbjct: 773  ITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDM 832

Query: 409  IEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
            I    +  W  MI G  +HG G  A     EM    IEPD+ +F+ +LNAC+H+GL+ EG
Sbjct: 833  IPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEG 892

Query: 469  LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACR 528
               F  MR    +EP+L+HY C+VD+L R G++  A   IE MP++P+  IW  LLS CR
Sbjct: 893  WKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCR 952

Query: 529  NYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGC 588
             + ++ + E VA+H+  ++  N+  YV+L+N++A    W + +++R  M++R  K+ PGC
Sbjct: 953  IHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGC 1012

Query: 589  SWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            SWIE+ G  + F   +    Q + I  +L  +
Sbjct: 1013 SWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKL 1044


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 221/664 (33%), Positives = 341/664 (51%), Gaps = 98/664 (14%)

Query: 20  LLRKC---KTLNDVNQIHARMITTGFIKNT---HLTTKLVASFSSSPCTPLTEFARYIFF 73
           LL++C   K++ +  QIHA  IT G + +    HL + L A+++   C P    AR +F 
Sbjct: 24  LLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAP---HARKLF- 79

Query: 74  KYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVS-VDKFSASLVLKACS 130
                 E ++P  F WNA+I+ Y++     +AL +F  ML +G    D ++   V+KAC 
Sbjct: 80  -----DELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACG 134

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
              L E G  IH       F SD F+QN L+++Y+ CG +E AR++FD M  R  VS+N+
Sbjct: 135 DYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNT 194

Query: 191 MIDGYVKSGNIESARELFDSM----------------PI-----------RERNLIS--- 220
           MI+GY K+G ++ A  +FD M                P+           R   L+    
Sbjct: 195 MINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKN 254

Query: 221 -------WNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALF 273
                  WNS+L+ YA+    +  A  IF +M +RD++SW +M++G +  G    A  L 
Sbjct: 255 LGEDISVWNSLLDMYAKC-GNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLC 313

Query: 274 DKMP---------------------------------------KRDVVSWANMIDGYAKL 294
             M                                        + +V+    +ID YAK 
Sbjct: 314 QMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKC 373

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
             V+++ R+F +  K+     NA++ G + NG S KA+E+F  M  E  + P+DA+L  +
Sbjct: 374 NNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEA-VDPNDATLNSL 432

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI--EDG 412
           L A A L  + +   +H YL +  F    +    LID+YSKCGS+E+A  +F  I  +D 
Sbjct: 433 LPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDK 492

Query: 413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCF 472
            +  W+A+I G  +HG GE A  L  +M +  ++P++ITFT +L+AC+HAGLV EGL  F
Sbjct: 493 DIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLF 552

Query: 473 ELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYEN 532
           + M   +++     HY C++D+LGRAG +E A  LI  M   PN  +W  LL +C  +EN
Sbjct: 553 KFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSCVIHEN 612

Query: 533 LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           + +GE  AK L  ++  N+ +YVLL+N+++ +G W DA  VR MM    L+K P  S IE
Sbjct: 613 VELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTPAHSLIE 672

Query: 593 LEGV 596
           +  +
Sbjct: 673 VRNI 676



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/445 (23%), Positives = 201/445 (45%), Gaps = 55/445 (12%)

Query: 11  CNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY 70
           C +  S L +    K L    ++HA +      ++  +   L+  ++   C  + E A+ 
Sbjct: 224 CATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAK--CGNMDE-AQM 280

Query: 71  IFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS 130
           IF++     +K+D   W  ++  Y    D + AL++  +M    V  +  + + VL AC+
Sbjct: 281 IFYEM----DKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACA 336

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
            L  ++ G  +HG   +    S++ ++  LI +Y +C  +  + ++F K   + +  +N+
Sbjct: 337 SLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNA 396

Query: 191 MIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER 248
           +I G + +G    A ELF  M +   + N  + NS+L  YA L + LQ A  +   +   
Sbjct: 397 IISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFL-TDLQQARNMHGYLIRS 455

Query: 249 DLIS----WNSMLHGCVKCGKMDDAQALFDKMPK--RDVVSWANMIDGYAKLGRVDIARR 302
             +S       ++    KCG ++ A  +F+ +PK  +D+++W+ +I GY   G  + A  
Sbjct: 456 GFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAIS 515

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           LFD+M +  V                                 P++ +   +L A +  G
Sbjct: 516 LFDQMVQSGV--------------------------------KPNEITFTSILHACSHAG 543

Query: 363 HIDKGVAIHRY-LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH--WNA 419
            +D+G+ + ++ LE +Q SL   H   +ID+  + G +E A ++   +     +H  W A
Sbjct: 544 LVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMA-FRPNHAVWGA 602

Query: 420 MINGLAIH---GLGELAFDLLMEME 441
           ++    IH    LGE+A   L E+E
Sbjct: 603 LLGSCVIHENVELGEVAAKWLFELE 627



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 16/219 (7%)

Query: 10  PCNSTQSTLLLLRKCKT-LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFA 68
           P ++T ++LL      T L     +H  +I +GF+    + T L+  +S   C  L E A
Sbjct: 424 PNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSK--CGSL-ESA 480

Query: 69  RYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA 128
             IF      ++ KD   W+AII  Y      + A+ +F  M+ +GV  ++ + + +L A
Sbjct: 481 HNIFNGIP--KKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHA 538

Query: 129 CSRLGLIEEGLQIHGLL---RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-D 184
           CS  GL++EGL +   +    +++  +D +   C+I L  R G LE A +L   M  R +
Sbjct: 539 CSHAGLVDEGLGLFKFMLEDNQMSLRTDHY--TCVIDLLGRAGRLEEAYELIRTMAFRPN 596

Query: 185 SVSYNSMIDGYVKSGNIE----SARELFDSMPIRERNLI 219
              + +++   V   N+E    +A+ LF+  P    N +
Sbjct: 597 HAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYV 635


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 186/466 (39%), Positives = 276/466 (59%), Gaps = 7/466 (1%)

Query: 158 NCLISLYVRC-GYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRER 216
           NCL++ Y R  G L  AR LFD++   D VSYN+++  +  SG+ + AR LF SMP+R+ 
Sbjct: 52  NCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLLCHFASGDADGARRLFASMPVRD- 110

Query: 217 NLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK 275
            + SWN++++G +  KSG ++ A  +F  MP R+ +SWN+M+ G    G M  A+  F  
Sbjct: 111 -VASWNTMVSGLS--KSGAVEEAKVVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEWFRN 167

Query: 276 MP-KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEI 334
            P K D V W  M+ GY  +G V  A + F+ MP R++V+ NA++ GYV+N ++  AL +
Sbjct: 168 APEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRL 227

Query: 335 FDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYS 394
           F  M  E  + P+ ++L  VL   + L  +  G  IH++  K   S N   G +L+ MY 
Sbjct: 228 FRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYC 287

Query: 395 KCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTG 454
           KCG + +A  +F ++    V  WNAMI+G A HG G+ A +L   M+   +EP+ ITF  
Sbjct: 288 KCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVV 347

Query: 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPME 514
           +L AC H GL   G+ CFE M+ ++ +EP + HY CMVD+L RAG +E A + I  MP E
Sbjct: 348 VLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFE 407

Query: 515 PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVR 574
           P+   + TLL+ACR Y+NL   E  A  LI  D  ++ +YV L+N++A    W+D  RVR
Sbjct: 408 PHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVR 467

Query: 575 SMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
             MK+  + K PG SWIE++GV+HEF   D+   Q+  I+  L  +
Sbjct: 468 RWMKDNTVVKTPGYSWIEIKGVLHEFRSNDRLHPQLYLIHEKLGQL 513



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 102/214 (47%), Gaps = 11/214 (5%)

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLML-DNGVSVDKFSASLVLKACSR 131
            KY      ++   WNA++  Y       +AL +F  M+ +  V  +  + S VL  CS 
Sbjct: 194 IKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSN 253

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
           L  +  G QIH    K+    +L +   L+S+Y +CG L  A  LF +M  RD V++N+M
Sbjct: 254 LSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAM 313

Query: 192 IDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPER 248
           I GY + G+ + A  LF+ M     E N I++  VL   A + +GL  F  Q FE M E 
Sbjct: 314 ISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLT--ACIHTGLCDFGIQCFEGMQEL 371

Query: 249 DLIS-----WNSMLHGCVKCGKMDDAQALFDKMP 277
             I      ++ M+    + GK++ A      MP
Sbjct: 372 YGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMP 405


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 220/685 (32%), Positives = 341/685 (49%), Gaps = 86/685 (12%)

Query: 10  PCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFAR 69
           PC      LL  R+C       ++H   I  G++    +   +V  ++   C  L   AR
Sbjct: 220 PCILKACGLLKDRRCGA-----EVHGLAIKEGYVSIVFVANSIVGMYTK--CNDLNG-AR 271

Query: 70  YIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKAC 129
            +F +     EK+D   WN++I  YS      EAL +F  M    ++ + ++    L+AC
Sbjct: 272 QLFDR---MPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQAC 328

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
                I++G+ IH  + K ++  ++F+ N LI++Y R G +  A  +F  M   D++S+N
Sbjct: 329 EDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWN 388

Query: 190 SMIDGYVKSGNIESARELFDSM--PIRERNLISWNSVLNGYAQ--------------LKS 233
           SM+ G+V++G    A + +  M    ++ +L++  S++   A+              +K+
Sbjct: 389 SMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKN 448

Query: 234 GLQFAWQ--------------------IFEKMPERDLISWNSMLHGCVKCGKMDDAQALF 273
           GL    Q                    IF+KMP++D++SW +++ G  + G    A  LF
Sbjct: 449 GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELF 508

Query: 274 DKMPKR--------------------------------------DVVSWANMIDGYAKLG 295
            ++                                         D+V    ++D Y + G
Sbjct: 509 REVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGECG 568

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
            VD A R+F+ +  +DVV+  +M+  YV NG + +ALE+F  M+ E  + PD  SLV +L
Sbjct: 569 NVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMK-ETGVEPDSISLVSIL 627

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
           SA A L  + KG  IH +L +  F L G     L+DMY++CG++E +  VF  I +  + 
Sbjct: 628 SAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLV 687

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            W +MIN   +HG G  A DL   ME  SI PD I F  +L AC+H+GL+ EG    E M
Sbjct: 688 LWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESM 747

Query: 476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNV 535
           +  ++LEP  +HY C+VD+LGRA H+E A   ++ M +EP   +W  LL AC+ + N  +
Sbjct: 748 KYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKEL 807

Query: 536 GEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG 595
           GE  A+ L+ MD  N  +YVL+SN++A    W D   VR  MK   LKK PGCSWIE+  
Sbjct: 808 GEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGN 867

Query: 596 VVHEFFVRDKSRLQVRDIYYMLDNM 620
            VH F  RDKS  Q  +IY  L  +
Sbjct: 868 KVHTFMARDKSHPQSYEIYSKLSQI 892



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 180/656 (27%), Positives = 294/656 (44%), Gaps = 102/656 (15%)

Query: 16  STLLLLRKCKTLNDVNQIHARMITTGFIKNT-HLTTKLVASFSSSPCTPLTEFARYIFFK 74
           S L L    K L++  Q+HA MIT+  + N+  L+T+LV  +    C    E       K
Sbjct: 119 SVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAE-------K 171

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
                  K  F WNA+I  Y    +P  +L ++  M  +G+ +D  +   +LKAC  L  
Sbjct: 172 LFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKD 231

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMID 193
              G ++HGL  K  + S +F+ N ++ +Y +C  L  ARQLFD+M  + D VS+NSMI 
Sbjct: 232 RRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMIS 291

Query: 194 GYVKSGNIESARELF-----------------------DSMPIRER-------------- 216
            Y  +G    A  LF                       DS  I++               
Sbjct: 292 AYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYI 351

Query: 217 NLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM 276
           N+   N+++  YA+    +  A  IF  M + D ISWNSML G V+ G   +A   + +M
Sbjct: 352 NVFVANALIAMYARFGK-MGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEM 410

Query: 277 ----PKRDVVSWANMI-----------------------------------DGYAKLGRV 297
                K D+V+  ++I                                   D YAK   +
Sbjct: 411 RDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSM 470

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
                +FD+MP +DVV+   ++ G+ +NG   +ALE+F  +Q E  +  D   +  +L A
Sbjct: 471 KYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLE-GIDLDVMMISSILLA 529

Query: 358 IAQLGHIDKGVAIHRYLEKDQFS-LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
            + L  I     IH Y+ +   S L  ++G+  +D+Y +CG+++ A ++FE IE   V  
Sbjct: 530 CSGLKLISSVKEIHSYIIRKGLSDLVLQNGI--VDVYGECGNVDYAARMFELIEFKDVVS 587

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE-LM 475
           W +MI+    +GL   A +L   M+   +EPD I+   +L+A A    +K+G      L+
Sbjct: 588 WTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLI 647

Query: 476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNV 535
           R+   LE  L     +VD+  R G +E +RN+  +     + V+W ++++A   Y     
Sbjct: 648 RKGFVLEGSLA--STLVDMYARCGTLEKSRNVF-NFIRNKDLVLWTSMINA---YGMHGC 701

Query: 536 GEPVAKHLIGMDSSNSS----SYVLLSNMFAGLGMWNDARR-VRSMMKERNLKKLP 586
           G         M+  + +    ++V +    +  G+ N+ RR + SM  E  L+  P
Sbjct: 702 GRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWP 757



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 181/411 (44%), Gaps = 41/411 (9%)

Query: 123 SLVLKACSRLGLIEEGLQIHG-LLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
           S VL+ C     + EG Q+H  ++   A  + +FL   L+ +Y +CG L  A +LFD M 
Sbjct: 118 SSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMP 177

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNL--ISWNSVLNGYAQLKS---GLQ 236
            +   ++N+MI  YV +G    + EL+  M +    L   ++  +L     LK    G +
Sbjct: 178 HKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAE 237

Query: 237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLG 295
                 ++     +   NS++    KC  ++ A+ LFD+MP K DVVSW +MI  Y+  G
Sbjct: 238 VHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNG 297

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
           +   A RLF EM K                                  L P+  + V  L
Sbjct: 298 QSIEALRLFGEMQKAS--------------------------------LAPNTYTFVAAL 325

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
            A      I +G+ IH  + K  + +N     ALI MY++ G +  A  +F  ++D    
Sbjct: 326 QACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTI 385

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            WN+M++G   +GL   A     EM     +PD +    ++ A A +G    G+      
Sbjct: 386 SWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYA 445

Query: 476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
            + + L+ +LQ    +VD+  +   ++    + + MP + + V W T+++ 
Sbjct: 446 MK-NGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMP-DKDVVSWTTIIAG 494


>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 618

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 184/525 (35%), Positives = 307/525 (58%), Gaps = 11/525 (2%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D   W A++  Y+      +A  +F    D   +V  ++A  +L   +R G ++E   +
Sbjct: 64  RDVVSWTALVAAYACQGMLHDARALFD-RPDARRNVVTWTA--LLSGYARAGRVDEAEAL 120

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
            G + +     ++   N ++  Y   G +  A  LF+ M +RD+ S+N ++   V+SGNI
Sbjct: 121 FGRMPE----RNVVSWNTMLEAYTSSGRVGDACTLFNGMPVRDAGSWNILLAALVRSGNI 176

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
           + AR+LFD MP  ERN+++W +++ G A+  S +  A  +F+ MPER+++SWN+M+ G  
Sbjct: 177 DKARKLFDRMP--ERNVMAWTTMVAGIARSGS-VNEARALFDGMPERNVVSWNAMISGYA 233

Query: 262 KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
           +   +D+A  LF KMP RD+ SW  MI G+ +   ++ A+ LFD+MP+R+VV    MM G
Sbjct: 234 RNHMIDEAHDLFMKMPTRDIASWNIMITGFIQNKNLERAQELFDKMPRRNVVTWTTMMNG 293

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
           Y+++  S  AL++F+ M  +  + P+  + +  + A + L  + +G  +H+ + K  F  
Sbjct: 294 YLQSIQSETALQLFNGMLID-GIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTPFQF 352

Query: 382 NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEME 441
           +      L+++Y+KCG I  A KVF   ++  V  WN MI   A HG+G  A  L  +M+
Sbjct: 353 DTFIESTLMNLYAKCGEIILARKVFNLSKEKDVISWNGMIAAYAHHGVGLEAIHLYEKMQ 412

Query: 442 RLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHI 501
               +P+D+T+ GLL+AC+H+GLV EGL  FE M +   +    +HY C++D+  RAG +
Sbjct: 413 ENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRL 472

Query: 502 EAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF 561
             A+ LI  + +EP+  +W  LL  C ++ N ++G+  A++L+  + +N+ +Y LL N++
Sbjct: 473 GDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLLCNIY 532

Query: 562 AGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           A  G W +A ++RS M +R LKK PGCSWIE+   VH F  RDKS
Sbjct: 533 ASAGKWKEAAKIRSEMNDRGLKKQPGCSWIEVANKVHVFVSRDKS 577



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 116/458 (25%), Positives = 211/458 (46%), Gaps = 81/458 (17%)

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM-PE 247
           N  +     +G +  AR LFD  P  +R+++SW +++  YA  +  L  A  +F++    
Sbjct: 39  NRRVAELAAAGRVSDARRLFDRTP--DRDVVSWTALVAAYA-CQGMLHDARALFDRPDAR 95

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
           R++++W ++L G  + G++D+A+ALF +MP+R+VVSW  M++ Y   GRV  A  LF+ M
Sbjct: 96  RNVVTWTALLSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGM 155

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
           P RD  + N ++   VR+G   KA ++FD M     +     +   +++ IA+ G +++ 
Sbjct: 156 PVRDAGSWNILLAALVRSGNIDKARKLFDRMPERNVM-----AWTTMVAGIARSGSVNEA 210

Query: 368 VAIHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
            A+   + E++  S N     A+I  Y++   I+ A  +F ++    +  WN MI G   
Sbjct: 211 RALFDGMPERNVVSWN-----AMISGYARNHMIDEAHDLFMKMPTRDIASWNIMITGFIQ 265

Query: 427 HGLGELAFDLLMEMERLS-------------------------------IEPDDITFTGL 455
           +   E A +L  +M R +                               I P+ +TF G 
Sbjct: 266 NKNLERAQELFDKMPRRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPNQVTFLGA 325

Query: 456 LNACAHAGLVKEG-----LLC---FE--------------------LMRRIHKL--EPEL 485
           ++AC++   + EG     ++C   F+                    L R++  L  E ++
Sbjct: 326 VDACSNLAGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKVFNLSKEKDV 385

Query: 486 QHYGCMVDILGRAGHIEAARNLIEDMP---MEPNDVIWRTLLSACRNYENLNVGEPVAKH 542
             +  M+      G    A +L E M     +PNDV +  LLSAC +   ++ G  + ++
Sbjct: 386 ISWNGMIAAYAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEY 445

Query: 543 LIGMDS--SNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578
           ++   S       Y  L ++ +  G   DA+R+   +K
Sbjct: 446 MVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLK 483



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 130/291 (44%), Gaps = 57/291 (19%)

Query: 37  MITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSH 96
           ++ TGFI+N +L                 E A+ +F K      +++   W  ++  Y  
Sbjct: 258 IMITGFIQNKNL-----------------ERAQELFDKM----PRRNVVTWTTMMNGYLQ 296

Query: 97  GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFL 156
            +  + AL +F  ML +G+  ++ +    + ACS L  + EG Q+H ++ K  F  D F+
Sbjct: 297 SIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTPFQFDTFI 356

Query: 157 QNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRER 216
           ++ L++LY +CG +  AR++F+    +D +S+N MI  Y   G    A  L++ M     
Sbjct: 357 ESTLMNLYAKCGEIILARKVFNLSKEKDVISWNGMIAAYAHHGVGLEAIHLYEKMQ---- 412

Query: 217 NLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM 276
                    NGY                  + + +++  +L  C   G +D+   +F+ M
Sbjct: 413 --------ENGY------------------KPNDVTYVGLLSACSHSGLVDEGLRIFEYM 446

Query: 277 PKRDVVS-----WANMIDGYAKLGRVDIARRLFDEMP-KRDVVACNAMMGG 321
            K   ++     +  +ID  ++ GR+  A+RL   +  +      NA++GG
Sbjct: 447 VKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGG 497


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 190/517 (36%), Positives = 288/517 (55%), Gaps = 13/517 (2%)

Query: 107 FCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSD-----LFLQNCLI 161
           FC  +  G  +      ++    +R    EE  QIH  + K     D      FL  C+ 
Sbjct: 28  FCAQISVGPLLSGSCYCMMPNTETRCSKQEELKQIHARMLKTGLIQDSYAITKFLSCCIS 87

Query: 162 SLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM-----PIRER 216
           S      +L +A+ +FD     D+  +N MI G+  S   E +  L+  M     P    
Sbjct: 88  S--TSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAY 145

Query: 217 NLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM 276
              S     +  + L+   Q   QI +   E D+ + NS+++     G    A  LFD++
Sbjct: 146 TFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRI 205

Query: 277 PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFD 336
           PK D VSW ++I GYAK G++DIA  LF +M +++ ++   M+ GYV+ G   +AL++F 
Sbjct: 206 PKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFH 265

Query: 337 NMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC 396
            MQ    + PD+ SL   LSA AQLG +++G  IH YL K +  ++   G  LIDMY+KC
Sbjct: 266 EMQ-NSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKC 324

Query: 397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLL 456
           G +  A++VF+ I+  SV  W A+I+G A HG G  A    MEM+++ I+P+ ITFT +L
Sbjct: 325 GDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVL 384

Query: 457 NACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPN 516
            AC++ GLV+EG L F  M R + L+P ++HYGC+VD+L RAG ++ A+  I++MP++PN
Sbjct: 385 TACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPN 444

Query: 517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSM 576
            VIW  LL ACR ++N+ +GE + + LI +D  +   YV  +N+ A    W+ A   R +
Sbjct: 445 AVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRL 504

Query: 577 MKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
           MKE+ + K+PGCS I LEG  HEF   D+S  ++  I
Sbjct: 505 MKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKI 541



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/433 (28%), Positives = 233/433 (53%), Gaps = 23/433 (5%)

Query: 23  KCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKK 82
           +C    ++ QIHARM+ TG I++++  TK ++   SS  +    +A+ +F  +    ++ 
Sbjct: 52  RCSKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGF----DRP 107

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           D FLWN +I+ +S   +P+ +L+++  ML      + ++   +LKACS L  +EE  QIH
Sbjct: 108 DTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIH 167

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
             + K+ + +D++  N LI+ Y   G  + A  LFD++   D+VS+NS+I GY K+G ++
Sbjct: 168 AQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMD 227

Query: 203 SARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMP----ERDLISWNSML 257
            A  LF  M   E+N ISW ++++GY Q  +G+ + A Q+F +M     E D +S  + L
Sbjct: 228 IALTLFRKMV--EKNAISWTTMISGYVQ--AGMHKEALQLFHEMQNSDVEPDNVSLANAL 283

Query: 258 HGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
             C + G ++  + +   + K     D V    +ID YAK G +  A  +F  + ++ V 
Sbjct: 284 SACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQ 343

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
           A  A++ GY  +G+  +A+  F  MQ ++ + P+  +   VL+A +  G +++G  I   
Sbjct: 344 AWTALISGYAYHGHGREAISKFMEMQ-KMGIKPNVITFTTVLTACSYTGLVEEGKLIFYN 402

Query: 374 LEKD-QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHG--- 428
           +E+D       +H   ++D+ S+ G ++ A +  +++    +   W A++    IH    
Sbjct: 403 MERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIE 462

Query: 429 LGELAFDLLMEME 441
           LGE   ++L+ ++
Sbjct: 463 LGEEIGEILIAID 475


>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 641

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 206/609 (33%), Positives = 344/609 (56%), Gaps = 27/609 (4%)

Query: 1   MFVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP 60
           +F S++  + C        +++   ++  + + HA +I T   KN    + ++ S++ S 
Sbjct: 50  LFTSSSTTRKCQQ------IIKSGFSIKSIKEQHAHLIRTHHHKNPKSMSNVIKSYALSR 103

Query: 61  CTPLTEFARYIFFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFC-LMLDNGVSV 117
               +   +  F    AF +   P   ++N +I+  S   +P EA+VM+  LM + G+  
Sbjct: 104 ----SHLNKANF----AFIQIGQPTLLIFNYLIRGLSQSENPNEAIVMYSDLMYNQGILG 155

Query: 118 DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLF 177
           D  +   + KACSR+  +  G   H  + K+ FGS LF++N LI +Y   G L +A+++F
Sbjct: 156 DNLTFIYLFKACSRVKDVLHGQVFHVQVLKLGFGSYLFIENSLIRMYGYFGELGYAQKVF 215

Query: 178 DKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNL----ISWNSVLNGYAQL-K 232
           DKM  RD VS+NS+I GY +    +   +LF+ M  RE N+    ++   V+   + L +
Sbjct: 216 DKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLM--REANVTADSVTMVKVILACSYLCE 273

Query: 233 SGL--QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDG 290
            G+       I +K  + D+   NS++    + G +D A+ +FD+M ++++VSW  M+ G
Sbjct: 274 DGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSWNAMLTG 333

Query: 291 YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
           YA  G +  A++LF+EMP R+V++   M+ G  +      AL++F  M  +  + PD+ +
Sbjct: 334 YATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMM-DANVKPDEIT 392

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE 410
           +  VLSA + LG +D G  +H Y+ +     +   G ALIDMY KCG ++ A++VF  ++
Sbjct: 393 VSSVLSACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMK 452

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470
                 W +MI GLA++G  +  F+L  +M R  ++P   +F G+L AC HAGLV +GL 
Sbjct: 453 KKDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGILLACTHAGLVDKGLE 512

Query: 471 CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNY 530
            FE M  ++ L PE++HYGC+VD+L R+G ++ A   I+ MP+ P+ V+WR LLSAC+ +
Sbjct: 513 YFESMEHVYGLRPEMKHYGCVVDLLSRSGELDRAYEFIKQMPVVPDVVLWRILLSACKLH 572

Query: 531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSW 590
            NL + E     L+ +D SNS +YVLLSN +AG   W+DA R+R +M   +++K    S 
Sbjct: 573 RNLVLAEIATSKLLELDPSNSGNYVLLSNTYAGSDRWDDASRMRDLMVVGDVQKPSSWSS 632

Query: 591 IELEGVVHE 599
           IE+ G  ++
Sbjct: 633 IEVIGATNK 641


>gi|357438957|ref|XP_003589755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478803|gb|AES60006.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 891

 Score =  341 bits (874), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 195/525 (37%), Positives = 299/525 (56%), Gaps = 39/525 (7%)

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
           + GLI E  +   L  +      + +   ++S Y++   +E A +LF++M +R+ VS+N+
Sbjct: 88  KCGLINEARK---LFDRPDAQKSVIVWTAMVSGYIKMNRIEEAERLFNEMPVRNVVSWNT 144

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL 250
           MIDGY ++G  + A +LF  MP  ERN++SWN+V+   A     +  A ++F +M ERD+
Sbjct: 145 MIDGYARNGRTQEALDLFGRMP--ERNVVSWNTVMTALAHCGR-IDDAERLFNEMRERDV 201

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
           +SW +M+ G  K G++D A+ +FDKMP R+VVSW  MI GYA+ GR D A +LF+ MP+R
Sbjct: 202 VSWTTMVAGLSKNGRVDAAREVFDKMPIRNVVSWNAMIAGYAQNGRFDEALKLFERMPER 261

Query: 311 D-------------------------------VVACNAMMGGYVRNGYSMKALEIFDNMQ 339
           D                               V+   AMM GYV++G S +AL++F+ MQ
Sbjct: 262 DMPSWNTMVTGFIQNGDLNRAEQLFHAMPQKNVITWTAMMTGYVQHGLSEEALKLFNKMQ 321

Query: 340 CELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSI 399
               L P   + V VL A + L  + +G  IH+ + K  F  +     ALI+MYSKCG  
Sbjct: 322 ANDGLKPTTGTFVTVLGACSDLAGLPEGQQIHQMISKTVFQESTYVVSALINMYSKCGDF 381

Query: 400 ENAIKVFEQIEDGSVD--HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
             A K+F+    G +D   WN MI   A HG G  A +L  +M+ L  + +D+T+ GLL 
Sbjct: 382 HVAKKMFDDGLSGHMDLIAWNGMIAAYAHHGYGNEAINLFNKMQELGFQANDVTYVGLLT 441

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
           AC+HAGL  EG   F+ + +   ++    HY C++D+ GRAG ++ A N+IE +  E + 
Sbjct: 442 ACSHAGLFDEGFKYFDELLKNRYIQVREDHYTCLIDLCGRAGRLDEALNIIEGLGKEVSL 501

Query: 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
            +W  LL+ C  + N ++G+ VA  ++ M+  N+ +Y+L SNM+A +GM  +A  VR  M
Sbjct: 502 SLWGALLAGCSVHGNADIGKLVADKVLKMEPENADTYLLASNMYASVGMREEAANVRMKM 561

Query: 578 KERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWT 622
           K++ LKK PGCSWI++   V  F V DKS  Q   + Y+L ++ T
Sbjct: 562 KKKGLKKQPGCSWIDVGNTVQVFVVNDKSHSQFEMLKYLLLDLHT 606



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 124/406 (30%), Positives = 210/406 (51%), Gaps = 52/406 (12%)

Query: 124 LVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183
            + K C R G + E  ++   + K     D  L   +IS Y++CG +  AR+LFD+   +
Sbjct: 51  FISKLC-REGKVNEARKVFDEMSK----RDSCLWTTMISGYIKCGLINEARKLFDRPDAQ 105

Query: 184 DSV-SYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIF 242
            SV  + +M+ GY+K   IE A  LF+ MP+  RN++SWN++++GYA+     Q A  +F
Sbjct: 106 KSVIVWTAMVSGYIKMNRIEEAERLFNEMPV--RNVVSWNTMIDGYAR-NGRTQEALDLF 162

Query: 243 EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
            +MPER+++SWN+++     CG++DDA+ LF++M +RDVVSW  M+ G +K GRVD AR 
Sbjct: 163 GRMPERNVVSWNTVMTALAHCGRIDDAERLFNEMRERDVVSWTTMVAGLSKNGRVDAARE 222

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           +FD+MP R+VV+ NAM+ GY +NG   +AL++F+ M                        
Sbjct: 223 VFDKMPIRNVVSWNAMIAGYAQNGRFDEALKLFERMP----------------------- 259

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
                       E+D  S N      ++  + + G +  A ++F  +   +V  W AM+ 
Sbjct: 260 ------------ERDMPSWN-----TMVTGFIQNGDLNRAEQLFHAMPQKNVITWTAMMT 302

Query: 423 GLAIHGLGELAFDLLMEME-RLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
           G   HGL E A  L  +M+    ++P   TF  +L AC+    + EG    +++ +    
Sbjct: 303 GYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPEGQQIHQMISKT-VF 361

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSA 526
           +        ++++  + G    A+ + +D      D+I W  +++A
Sbjct: 362 QESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAA 407



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/404 (28%), Positives = 208/404 (51%), Gaps = 63/404 (15%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           WN +I  Y+     +EAL +F  M +  V     S + V+ A +  G I++  ++   +R
Sbjct: 142 WNTMIDGYARNGRTQEALDLFGRMPERNV----VSWNTVMTALAHCGRIDDAERLFNEMR 197

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           +     D+     +++   + G ++ AR++FDKM IR+ VS+N+MI GY ++G  + A +
Sbjct: 198 E----RDVVSWTTMVAGLSKNGRVDAAREVFDKMPIRNVVSWNAMIAGYAQNGRFDEALK 253

Query: 207 LFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKM 266
           LF+ MP  ER++ SWN+++ G+ Q    L  A Q+F  MP++++I+W +M+ G V+ G  
Sbjct: 254 LFERMP--ERDMPSWNTMVTGFIQ-NGDLNRAEQLFHAMPQKNVITWTAMMTGYVQHGLS 310

Query: 267 DDAQALFDKMPKRD------------------------------------------VVSW 284
           ++A  LF+KM   D                                          VVS 
Sbjct: 311 EEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPEGQQIHQMISKTVFQESTYVVS- 369

Query: 285 ANMIDGYAKLGRVDIARRLFDE--MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
             +I+ Y+K G   +A+++FD+      D++A N M+  Y  +GY  +A+ +F+ MQ EL
Sbjct: 370 -ALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAAYAHHGYGNEAINLFNKMQ-EL 427

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF-SLNGKHGVALIDMYSKCGSIEN 401
               +D + V +L+A +  G  D+G      L K+++  +   H   LID+  + G ++ 
Sbjct: 428 GFQANDVTYVGLLTACSHAGLFDEGFKYFDELLKNRYIQVREDHYTCLIDLCGRAGRLDE 487

Query: 402 AIKVFEQI-EDGSVDHWNAMINGLAIHG---LGELAFDLLMEME 441
           A+ + E + ++ S+  W A++ G ++HG   +G+L  D +++ME
Sbjct: 488 ALNIIEGLGKEVSLSLWGALLAGCSVHGNADIGKLVADKVLKME 531



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 123/248 (49%), Gaps = 17/248 (6%)

Query: 75  YHAFREKKDPFLWNAIIKTY-SHGLDPKEALVMFCLMLDN-GVSVDKFSASLVLKACSRL 132
           +HA   +K+   W A++  Y  HGL  +EAL +F  M  N G+     +   VL ACS L
Sbjct: 286 FHAM-PQKNVITWTAMMTGYVQHGL-SEEALKLFNKMQANDGLKPTTGTFVTVLGACSDL 343

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK--MGIRDSVSYNS 190
             + EG QIH ++ K  F    ++ + LI++Y +CG    A+++FD    G  D +++N 
Sbjct: 344 AGLPEGQQIHQMISKTVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNG 403

Query: 191 MIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPE 247
           MI  Y   G    A  LF+ M     + N +++  +L   +   +GL    ++ F+++ +
Sbjct: 404 MIAAYAHHGYGNEAINLFNKMQELGFQANDVTYVGLLTACSH--AGLFDEGFKYFDELLK 461

Query: 248 RDLIS-----WNSMLHGCVKCGKMDDAQALFDKMPKRDVVS-WANMIDGYAKLGRVDIAR 301
              I      +  ++  C + G++D+A  + + + K   +S W  ++ G +  G  DI +
Sbjct: 462 NRYIQVREDHYTCLIDLCGRAGRLDEALNIIEGLGKEVSLSLWGALLAGCSVHGNADIGK 521

Query: 302 RLFDEMPK 309
            + D++ K
Sbjct: 522 LVADKVLK 529


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 203/600 (33%), Positives = 338/600 (56%), Gaps = 53/600 (8%)

Query: 30  VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNA 89
           +NQIHA+++ +G +++  L TK V   ++S       +AR +F ++     +   FLWNA
Sbjct: 87  LNQIHAQLVVSGLVESGFLVTKFV---NASWNIGEIGYARKVFDEF----PEPSVFLWNA 139

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA 149
           II+ YS      +A+ M+  M  +GV+ D F+   VLKACS + ++E G ++HG + ++ 
Sbjct: 140 IIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLG 199

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD 209
           F SD+F+QN L++LY +CG                                +E AR +F+
Sbjct: 200 FESDVFVQNGLVALYAKCG-------------------------------RVEQARIVFE 228

Query: 210 SMPIRERNLISWNSVLNGYAQLKSGLQF-AWQIFEKMPER----DLISWNSMLHGCVKCG 264
            +   +RN++SW S+++GY Q  +GL   A +IF +M +R    D I+  S+L       
Sbjct: 229 GLD--DRNIVSWTSMISGYGQ--NGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVE 284

Query: 265 KMDDAQALFDKMPKRDVVSWANMIDG----YAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
            ++  +++   + K  +    +++      YAK G+V +AR  FD+M   +V+  NAM+ 
Sbjct: 285 DLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMIS 344

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           GY +NGY+ +A+ +F  M  +  +  D  ++   + A AQ+G +D    +  Y+ K ++ 
Sbjct: 345 GYAKNGYTNEAVGLFQEMISK-NIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYR 403

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
            +     ALIDM++KCGS++ A +VF++  D  V  W+AMI G  +HG G+ A DL   M
Sbjct: 404 NDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAM 463

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500
           ++  + P+D+TF GLL AC H+GLV+EG   F  M+  + +E   QHY C+VD+LGR+GH
Sbjct: 464 KQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMK-YYGIEARHQHYACVVDLLGRSGH 522

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560
           +  A + I  MP+EP   +W  LL AC+ Y ++ +GE  A+ L  +D  N+  YV LSN+
Sbjct: 523 LNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNL 582

Query: 561 FAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +A   +W+   +VR +M+E+ L K  G S IE+ G +  F V DKS  + ++I+  L+++
Sbjct: 583 YASSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESL 642



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 130/288 (45%), Gaps = 21/288 (7%)

Query: 20  LLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +LR    + D+ Q   IH  ++  G      L   L A ++   C  +   AR  F +  
Sbjct: 276 VLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAK--CGQVM-VARSFFDQM- 331

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
              E  +  +WNA+I  Y+      EA+ +F  M+   +  D  +    + AC+++G ++
Sbjct: 332 ---EIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLD 388

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
               +   + K  + +D+F+   LI ++ +CG ++ AR++FD+   +D V +++MI GY 
Sbjct: 389 LAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYG 448

Query: 197 KSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLISW 253
             G  + A +LF +M       N +++  +L   A   SGL +  W++F  M     I  
Sbjct: 449 LHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLT--ACNHSGLVEEGWELFHSMKYYG-IEA 505

Query: 254 NSMLHGCV-----KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR 296
               + CV     + G +++A      MP    VS    + G  K+ R
Sbjct: 506 RHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYR 553


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 215/691 (31%), Positives = 356/691 (51%), Gaps = 93/691 (13%)

Query: 19  LLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAF 78
           +LL  C ++ +++QI   +I  G        TKLV+ FS      + E AR     +   
Sbjct: 54  VLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKY--GSINEAARV----FEPI 107

Query: 79  REKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
            +K D  L++ ++K Y+     + AL   C M  + V    ++ + +LK C     ++ G
Sbjct: 108 DDKLDA-LYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRG 166

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
            +IHG L   +F +++F    ++++Y +C  ++ A ++FD+M  RD VS+N++I G+ ++
Sbjct: 167 KEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQN 226

Query: 199 GNIESARELF----------DSMPI-------RERNLISWNSVLNGYAQLKSG------- 234
           G  + A EL           DS+ +        +  L+     ++GYA +++G       
Sbjct: 227 GFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYA-IRAGFAKLVNI 285

Query: 235 -------------LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR-- 279
                        ++ A  IF+ M ++ ++SWNSM+ G V+ G+ + A A+F+KM +   
Sbjct: 286 STALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGI 345

Query: 280 -------------------------------------DVVSWANMIDGYAKLGRVDIARR 302
                                                D+    ++I  Y+K  RVDIA  
Sbjct: 346 DPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASD 405

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           +F+ +  R  V+ NAM+ GY +NG   +AL  F  M+  L + PD  ++V V+ A+A+L 
Sbjct: 406 IFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMK-SLGMKPDSFTMVSVIPALAELS 464

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
                  IH  + +     N     AL+DMYSKCG+I  A K+F+ I D  V  WNAMI+
Sbjct: 465 VTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMID 524

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
           G   HGLG  A DL  +M++ ++EP+DIT+  +++AC+H+GLV EGL  F+ M++ + LE
Sbjct: 525 GYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLE 584

Query: 483 PELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKH 542
           P + HYG MVD+LGRAG I+ A + IE+MP+ P   ++  +L AC+ ++N+ VGE  AK 
Sbjct: 585 PSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKK 644

Query: 543 LIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
           L  ++      +VLL+N++A    W+    VR  M+++ LKK PGCS +EL   VH F+ 
Sbjct: 645 LFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYS 704

Query: 603 RDKSRLQVRDIYYMLDNM--------WTPDS 625
              +  Q + IY  L+ +        + PD+
Sbjct: 705 GSTTHPQSKRIYAFLEELVYEIKAAGYVPDT 735



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 195/400 (48%), Gaps = 41/400 (10%)

Query: 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQL 176
           V K  A+++L+ C+ +   +E  QI  L+ K    ++   Q  L+SL+ + G +  A ++
Sbjct: 47  VYKHPAAVLLELCTSM---KELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARV 103

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESA-----RELFDSMPIRERNLISWNSVLNGYAQL 231
           F+ +  +    Y++M+ GY K+ ++E+A     R  +D +     N      V    A L
Sbjct: 104 FEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADL 163

Query: 232 KSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGY 291
           K G +   Q+            NS                        +V +   +++ Y
Sbjct: 164 KRGKEIHGQLIT----------NSF---------------------AANVFAMTGVVNMY 192

Query: 292 AKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASL 351
           AK  ++D A ++FD MP+RD+V+ N ++ G+ +NG++ KALE+   MQ E    PD  +L
Sbjct: 193 AKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQ-RPDSITL 251

Query: 352 VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED 411
           V VL A A +G +  G +IH Y  +  F+       AL DMYSKCGS+E A  +F+ ++ 
Sbjct: 252 VTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQ 311

Query: 412 GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC 471
            +V  WN+M++G   +G  E A  +  +M    I+P  +T    L+ACA  G ++ G   
Sbjct: 312 KTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFV 371

Query: 472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM 511
            + + +++ L  ++     ++ +  +   ++ A ++  ++
Sbjct: 372 HKFVDQLN-LGSDISVMNSLISMYSKCKRVDIASDIFNNL 410


>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
 gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 199/603 (33%), Positives = 331/603 (54%), Gaps = 46/603 (7%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           ++ CK L    QIHA+++T+G + +  +T+K++  F++       E+  Y          
Sbjct: 12  IKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFAN-----FVEYGDYACDYLEQGNT 66

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +   F +N++I  Y  G  P+ A+ ++  M+ +G   D F+  ++LKACS      EG Q
Sbjct: 67  RLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQ 126

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +HG++ K+   +D ++QN LI  Y  CG                               +
Sbjct: 127 VHGVVVKLGLLADHYVQNSLIRCYGACG-------------------------------D 155

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMP-ERDLISWNSMLH 258
              A ++FD M +R+  ++SWNS+++G+  +K+G    A  +F +M  E  + +  S+L 
Sbjct: 156 FSCAGKVFDEMLVRD--VVSWNSLISGF--MKAGHFDEAISVFFRMDVEPSMTTLVSVLA 211

Query: 259 GCVKCGKMDDAQALFDKMPKR---DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
            C + G +   + +   + +R   ++V    M+D Y K G    A+ +FDE+P RD+V+ 
Sbjct: 212 ACARNGDLCTGKGIHGVIERRFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSW 271

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
             M+ G V++ +  ++LE+F  M+  L + PD   L  VLSA A LG +D G  +H Y+ 
Sbjct: 272 TIMITGLVQSDHPKQSLELFSMMR-TLGISPDAIILTSVLSACASLGTLDFGTWVHEYIN 330

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           +     +   G A++DMY+KCG IE A+K+F  +   +   WNA++ GLA+HGL   A +
Sbjct: 331 QRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALN 390

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           L   M    ++P++ITF  +L AC H GLV EG   F+ M +++ L P+L+HYGCM+D+ 
Sbjct: 391 LFEVMIISGVKPNEITFLAILTACCHCGLVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLF 450

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
            RAG +E A  L   MPM+P+ +IW  LL+AC    N+ +   +  +++ +D  +S  +V
Sbjct: 451 CRAGLLEEAVELARTMPMKPDVLIWGLLLNACTTVGNIELSHRIQDYILELDHDDSGVFV 510

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY 615
           LLSN+ A    W++  R+R +MK+R ++K PG S IE++G  HEF V D S LQ  +IY 
Sbjct: 511 LLSNISAINQRWSNVTRLRRLMKDRGVRKAPGSSVIEVDGKAHEFVVGDISHLQTEEIYK 570

Query: 616 MLD 618
           +L+
Sbjct: 571 VLN 573


>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 600

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 204/597 (34%), Positives = 326/597 (54%), Gaps = 50/597 (8%)

Query: 27  LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFL 86
           L+ + ++HA+++  G   +    +KL++S++     P +      F   HA       FL
Sbjct: 37  LHHLQELHAQLLKHGLHLDPVAASKLLSSYALHRRLPASRGVFASFPNPHA-----TTFL 91

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
            N +++ Y+    P+EA+ +F  M       D F+ S ++KA S  G+          LR
Sbjct: 92  PNTLLRAYALNALPREAVAVFSAMPHR----DSFTYSFLIKALSSAGVAP--------LR 139

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
            V             S  V+ G +E            D+   N++ID Y K+G    A +
Sbjct: 140 AVH------------SHVVKLGSIE------------DTYVGNALIDAYSKNGGFSDASK 175

Query: 207 LFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGK 265
           +F+ MP   R+++SWNS +   A ++ G ++ A ++F++M E+D +SWN++L G  K G 
Sbjct: 176 VFEEMP--RRDVVSWNSAMA--AMVRQGEVEGARRMFDEMLEKDTVSWNTLLDGYTKAGD 231

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
           +++A  LF  MP+R+VVSW+ ++ GY K G +++AR +FD+MP +++V    M+    +N
Sbjct: 232 VEEAFKLFQCMPERNVVSWSTVVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQN 291

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
           G   +A ++F  M+ E  +  D A++V +L+A A+ G +  G  IHRY+   Q   +   
Sbjct: 292 GLVEEAGKLFTQMK-EASVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHV 350

Query: 386 GVALIDMYSKCGSIENAIKVF--EQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
             ALIDM+ KCG I  A  VF  E +E  SV  WN +I G A+HG G+ A D   +M+  
Sbjct: 351 CNALIDMFCKCGCINRADYVFDTEIVEKDSVS-WNTIIGGFAMHGHGDKALDFFAQMKLQ 409

Query: 444 SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503
              PD +T   +L+AC H G V+EG   F  M R + + P+++HYGCM+D+LGR G I+ 
Sbjct: 410 GFCPDAVTMINVLSACTHMGFVEEGRRYFANMERDYGVVPQIEHYGCMIDLLGRGGLIKE 469

Query: 504 ARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563
           A +LI+ MP +PN+VIW +LLSACR ++N+   E     L  +  SN+ +Y +LS+++A 
Sbjct: 470 AVDLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSSIYAE 529

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            G W+D  + R  MK    +K  G SWIEL+   HEF V D+       I  M+D +
Sbjct: 530 AGKWSDMAKARMQMKGTGSQKSSGSSWIELDEAFHEFTVGDRKHPDSDQISEMVDRL 586


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 217/678 (32%), Positives = 340/678 (50%), Gaps = 84/678 (12%)

Query: 20  LLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+ C  L D     ++H   I  G++    +   +V  ++   C  L   AR +F +  
Sbjct: 186 ILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTK--CNDLNG-ARQLFDR-- 240

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
              EK+D   WN++I  YS      EAL +F  M    ++ + ++    L+AC     I+
Sbjct: 241 -MPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIK 299

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           +G+ IH  + K ++  ++F+ N LI++Y R G +  A  +F  M   D++S+NSM+ G+V
Sbjct: 300 QGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFV 359

Query: 197 KSGNIESARELFDSM--PIRERNLISWNSVLNGYAQ--------------LKSGLQFAWQ 240
           ++G    A + +  M    ++ +L++  S++   A+              +K+GL    Q
Sbjct: 360 QNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQ 419

Query: 241 --------------------IFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR- 279
                               IF+KMP++D++SW +++ G  + G    A  LF ++    
Sbjct: 420 VGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEG 479

Query: 280 -------------------------------------DVVSWANMIDGYAKLGRVDIARR 302
                                                D+V    ++D Y + G VD A R
Sbjct: 480 IDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYAAR 539

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           +F+ +  +DVV+  +M+  YV NG + +ALE+F  M+ E  + PD  SLV +LSA A L 
Sbjct: 540 MFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMK-ETGVEPDSISLVSILSAAASLS 598

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
            + KG  IH +L +  F L G     L+DMY++CG++E +  VF  I +  +  W +MIN
Sbjct: 599 ALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMIN 658

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
              +HG G  A DL   ME  SI PD I F  +L AC+H+GL+ EG    E M+  ++LE
Sbjct: 659 AYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLE 718

Query: 483 PELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKH 542
           P  +HY C+VD+LGRA H+E A   ++ M +EP   +W  LL AC+ + N  +GE  A+ 
Sbjct: 719 PWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQK 778

Query: 543 LIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
           L+ MD  N  +YVL+SN+++    W D   VR  MK   LKK PGCSWIE+   VH F  
Sbjct: 779 LLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTFMA 838

Query: 603 RDKSRLQVRDIYYMLDNM 620
           RDKS  Q  +IY  L  +
Sbjct: 839 RDKSHPQSYEIYSKLSQI 856



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 180/656 (27%), Positives = 294/656 (44%), Gaps = 102/656 (15%)

Query: 16  STLLLLRKCKTLNDVNQIHARMITTGFIKNT-HLTTKLVASFSSSPCTPLTEFARYIFFK 74
           S L L    K L++  Q+HA MIT+  + N+  L+T+LV  +    C    E       K
Sbjct: 83  SVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAE-------K 135

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
                  K  F WNA+I  Y    +P  +L ++  M  +G+ +D  +   +LKAC  L  
Sbjct: 136 LFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKD 195

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMID 193
              G ++HGL  K  + S +F+ N ++ +Y +C  L  ARQLFD+M  + D VS+NSMI 
Sbjct: 196 RRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMIS 255

Query: 194 GYVKSGNIESARELF-----------------------DSMPIRER-------------- 216
            Y  +G    A  LF                       DS  I++               
Sbjct: 256 AYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYI 315

Query: 217 NLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM 276
           N+   N+++  YA+    +  A  IF  M + D ISWNSML G V+ G   +A   + +M
Sbjct: 316 NVFVANALIAMYARFGK-MGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEM 374

Query: 277 ----PKRDVVSWANMI-----------------------------------DGYAKLGRV 297
                K D+V+  ++I                                   D YAK   +
Sbjct: 375 RDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSM 434

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
                +FD+MP +DVV+   ++ G+ +NG   +ALE+F  +Q E  +  D   +  +L A
Sbjct: 435 KYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLE-GIDLDVMMISSILLA 493

Query: 358 IAQLGHIDKGVAIHRYLEKDQFS-LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
            + L  I     IH Y+ +   S L  ++G+  +D+Y +CG+++ A ++FE IE   V  
Sbjct: 494 CSGLKLISSVKEIHSYIIRKGLSDLVLQNGI--VDVYGECGNVDYAARMFELIEFKDVVS 551

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE-LM 475
           W +MI+    +GL   A +L   M+   +EPD I+   +L+A A    +K+G      L+
Sbjct: 552 WTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLI 611

Query: 476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNV 535
           R+   LE  L     +VD+  R G +E +RN+  +     + V+W ++++A   Y     
Sbjct: 612 RKGFVLEGSLA--STLVDMYARCGTLEKSRNVF-NFIRNKDLVLWTSMINA---YGMHGC 665

Query: 536 GEPVAKHLIGMDSSNSS----SYVLLSNMFAGLGMWNDARR-VRSMMKERNLKKLP 586
           G         M+  + +    ++V +    +  G+ N+ RR + SM  E  L+  P
Sbjct: 666 GRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWP 721



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 183/412 (44%), Gaps = 43/412 (10%)

Query: 123 SLVLKACSRLGLIEEGLQIHG-LLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
           S VL+ C     + EG Q+H  ++   A  + +FL   L+ +Y +CG L  A +LFD M 
Sbjct: 82  SSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMP 141

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNL--ISWNSVLNGYAQLKSGLQFAW 239
            +   ++N+MI  YV +G    + EL+  M +    L   ++  +L     LK   ++  
Sbjct: 142 HKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKD-RRYGA 200

Query: 240 QIFEKMPERDLIS----WNSMLHGCVKCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKL 294
           ++     +   +S     NS++    KC  ++ A+ LFD+MP K DVVSW +MI  Y+  
Sbjct: 201 EVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSN 260

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
           G+   A RLF EM K                                  L P+  + V  
Sbjct: 261 GQSIEALRLFGEMQKAS--------------------------------LAPNTYTFVAA 288

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
           L A      I +G+ IH  + K  + +N     ALI MY++ G +  A  +F  ++D   
Sbjct: 289 LQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDT 348

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
             WN+M++G   +GL   A     EM     +PD +    ++ A A +G    G+     
Sbjct: 349 ISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAY 408

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
             + + L+ +LQ    +VD+  +   ++    + + MP + + V W T+++ 
Sbjct: 409 AMK-NGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMP-DKDVVSWTTIIAG 458


>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g44880-like [Glycine max]
          Length = 599

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 203/601 (33%), Positives = 326/601 (54%), Gaps = 48/601 (7%)

Query: 12  NSTQSTLLLLR-KCKTLNDVNQIHARMITTGFIKNTHLTTKLV---ASFSSSPCTPLT-- 65
           N+ ++ L +L+ + K++  + QIHA ++      N +L T  V   AS ++S   PL   
Sbjct: 14  NAERTCLHILQCRTKSIPTLLQIHAFILRHSLHSNLNLLTAFVTTCASLAASAKRPLAII 73

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG--VSVDKFSAS 123
             AR  F   H     +D FL N++I  +       +   +F  +       + D ++ +
Sbjct: 74  NHARRFFNATHT----RDTFLCNSMIAAHFAARQFSQPFTLFRDLRRQAPPFTPDGYTFT 129

Query: 124 LVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183
            ++K C+      EG  +HG++ K     DL++   L+                      
Sbjct: 130 ALVKGCATRVATGEGTLLHGMVLKNGVCFDLYVATALV---------------------- 167

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFE 243
                    D YVK G + SAR++FD M +R +  +SW +V+ GYA+    +  A ++F+
Sbjct: 168 ---------DMYVKFGVLGSARKVFDEMSVRSK--VSWTAVIVGYARCGD-MSEARRLFD 215

Query: 244 KMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRL 303
           +M +RD++++N+M+ G VK G +  A+ LF++M +R+VVSW +M+ GY   G V+ A+ +
Sbjct: 216 EMEDRDIVAFNAMIDGYVKMGCVGLARELFNEMRERNVVSWTSMVSGYCGNGDVENAKLM 275

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           FD MP+++V   NAM+GGY +N  S  ALE+F  MQ    + P++ ++V VL A+A LG 
Sbjct: 276 FDLMPEKNVFTWNAMIGGYCQNRRSHDALELFREMQTA-SVEPNEVTVVCVLPAVADLGA 334

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           +D G  IHR+  + +   + + G ALIDMY+KCG I  A   FE + +     WNA+ING
Sbjct: 335 LDLGRWIHRFALRKKLDRSARIGTALIDMYAKCGEITKAKLAFEGMTERETASWNALING 394

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
            A++G  + A ++   M      P+++T  G+L+AC H GLV+EG   F  M R   + P
Sbjct: 395 FAVNGCAKEALEVFARMIEEGFGPNEVTMIGVLSACNHCGLVEEGRRWFNAMERF-GIAP 453

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
           +++HYGCMVD+LGRAG ++ A NLI+ MP + N +I  + L AC  + ++   E V K +
Sbjct: 454 QVEHYGCMVDLLGRAGCLDEAENLIQTMPYDANGIILSSFLFACGYFNDVLRAERVLKEV 513

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVR 603
           + MD   + +YV+L N++A    W D   V+ MMK+R   K   CS IE+ G   EF   
Sbjct: 514 VKMDEDVAGNYVMLRNLYATRQRWTDVEDVKQMMKKRGTSKEVACSVIEIGGSFIEFAAG 573

Query: 604 D 604
           D
Sbjct: 574 D 574


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 218/691 (31%), Positives = 363/691 (52%), Gaps = 95/691 (13%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           S Q  + L + C     V+Q+H+++  TG + +T   TKL + ++   C  L + AR +F
Sbjct: 3   SRQVLVDLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAK--CASL-QAARKVF 59

Query: 73  FKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLML-DNGVSVDKFSASLVLKAC 129
                  E   P   LWN+ +++Y      +E L +F LM+   G + D F+  + LKAC
Sbjct: 60  ------DETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKAC 113

Query: 130 SRLGLIEEGLQIHGLLRKV-AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY 188
           + L ++E G  IHG  +K    GSD+F+ + L+ LY +CG +  A ++F++    D+V +
Sbjct: 114 AGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLW 173

Query: 189 NSMIDGYVKSGNIESARELFDSM---------PIRERNLISW------------------ 221
            SM+ GY ++ + E A  LF  M         P+   +++S                   
Sbjct: 174 TSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVI 233

Query: 222 -----------NSVLNGYAQLKSGLQ-FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDA 269
                      NS+LN YA  K+G +  A  +F KMPE+D+ISW++M+         ++A
Sbjct: 234 RREFDGDLPLVNSLLNLYA--KTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEA 291

Query: 270 QALFDKMPKR-----------------------------DVVSWAN----------MIDG 290
             LF +M ++                              +  W            +ID 
Sbjct: 292 LNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDM 351

Query: 291 YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
           Y K    D A  LF  +PK+DVV+  A++ GY +NG + K++ +F NM  +  + PD  +
Sbjct: 352 YMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSD-GIQPDAVA 410

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE 410
           +V +L+A ++LG   + + +H Y+ +  F+ N   G +LI++YSKCGS+ +A+K+F+ + 
Sbjct: 411 VVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMI 470

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS-IEPDDITFTGLLNACAHAGLVKEGL 469
              V  W++MI    IHG G  A ++  +M + S + P+++TF  +L+AC+HAGLV+EGL
Sbjct: 471 VRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGL 530

Query: 470 LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRN 529
             F+ M   ++L P+ +H+G MVD+LGR G +  A ++I  MP+     +W  LL ACR 
Sbjct: 531 KIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRI 590

Query: 530 YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCS 589
           + N+ +GE  AK+L  +D S++  Y+LLSN++A  G W++   +R+ +KER LKK+ G S
Sbjct: 591 HHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQS 650

Query: 590 WIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            +E+ G VH F   D+     + IY +L  +
Sbjct: 651 MVEVRGGVHSFLASDRFHPDSQKIYELLRKL 681



 Score =  275 bits (702), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 153/436 (35%), Positives = 245/436 (56%), Gaps = 10/436 (2%)

Query: 195  YVKSGNIESARELFDSMPIRERNLISWNSVLNGYA---QLKSGLQFAWQIFEKMPERDLI 251
            YV    I++A  +F+ +P     L  WN ++ G+A   +  S L+   ++ EK  + D  
Sbjct: 762  YVSFNRIDAASIVFEDIPNPCSFL--WNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKF 819

Query: 252  SWNSMLHGCVKCGKMDDAQALFDKMP----KRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
            ++   L  C     +   + +   +       D+   A ++D YAK G ++ AR +FD+M
Sbjct: 820  AFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKM 879

Query: 308  PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
              RD+V+  +M+ GY  NGY+ + L  FD M+    + P+  S++ VL A   LG + KG
Sbjct: 880  AVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVI-PNRVSILSVLLACGNLGALRKG 938

Query: 368  VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
               H Y+ +  F  +     A++DMYSKCGS++ A  +F++     +  W+AMI    IH
Sbjct: 939  EWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIH 998

Query: 428  GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
            G G  A DL  +M +  + P  +TFT +L+AC+H+GL++EG + F+LM     +  +L +
Sbjct: 999  GHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSN 1058

Query: 488  YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
            Y CMVD+LGRAG +  A +LIE+MP+EP+  IW +LL ACR + NL++ E +A HL  +D
Sbjct: 1059 YACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLD 1118

Query: 548  SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
              ++  +VLLSN++A    WN+  +VR MM  R   K+ G S +E +  VH+F V D+S 
Sbjct: 1119 PVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSH 1178

Query: 608  LQVRDIYYMLDNMWTP 623
             Q   +Y  L+ +  P
Sbjct: 1179 PQWEKLYAKLEELAAP 1194



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 110/416 (26%), Positives = 185/416 (44%), Gaps = 56/416 (13%)

Query: 30   VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDP--FLW 87
            + + HA++   G   ++ + TK    + S        F R I      F +  +P  FLW
Sbjct: 736  LKKTHAKIFAYGLQYDSRILTKFAIMYVS--------FNR-IDAASIVFEDIPNPCSFLW 786

Query: 88   NAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRK 147
            N +I+ ++       +L ++  M++ G+  DKF+    LK+C+ L  ++ G  IH  L  
Sbjct: 787  NVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVC 846

Query: 148  VAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAREL 207
                +DLF+   L+ +Y +CG +E AR +FDKM +RD VS+ SMI GY  +G        
Sbjct: 847  CGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGF 906

Query: 208  FDSMPIRE--RNLISWNSVL---NGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVK 262
            FD M       N +S  SVL        L+ G  F   + +   E D++   +++    K
Sbjct: 907  FDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSK 966

Query: 263  CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGY 322
            CG +D A+ LFD+   +D+V W+ MI  Y   G    A  LFD+M K  V          
Sbjct: 967  CGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGV---------- 1016

Query: 323  VRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN 382
                                   P   +   VLSA +  G +++G  ++  L  ++F + 
Sbjct: 1017 ----------------------RPSHVTFTCVLSACSHSGLLEEG-KMYFQLMTEEFVIA 1053

Query: 383  GK--HGVALIDMYSKCGSIENAIKVFEQI---EDGSVDHWNAMINGLAIHGLGELA 433
             K  +   ++D+  + G +  A+ + E +    D S+  W +++    IH   +LA
Sbjct: 1054 RKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASI--WGSLLGACRIHNNLDLA 1107



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 105/238 (44%), Gaps = 22/238 (9%)

Query: 16   STLLLLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
            S L +L  C  L  + +    H+ +I TGF  +  + T ++  +S   C  L + AR +F
Sbjct: 921  SILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSK--CGSL-DLARCLF 977

Query: 73   FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL 132
             +       KD   W+A+I +Y      ++A+ +F  M+  GV     + + VL ACS  
Sbjct: 978  DE----TAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHS 1033

Query: 133  GLIEEGLQIHGLL-RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNS 190
            GL+EEG     L+  +      L    C++ L  R G L  A  L + M +  D+  + S
Sbjct: 1034 GLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGS 1093

Query: 191  MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFA---WQIFEKM 245
            ++       N++ A ++ D       +L   + V  GY  L S +  A   W   EK+
Sbjct: 1094 LLGACRIHNNLDLAEKIAD-------HLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKV 1144



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 20/144 (13%)

Query: 392 MYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDIT 451
           MY     I+ A  VFE I +     WN MI G A  G    + +L  +M    ++PD   
Sbjct: 761 MYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFA 820

Query: 452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC---------MVDILGRAGHIE 502
           F   L +CA       GL   +  + IH+    L   GC         +VD+  + G IE
Sbjct: 821 FPFALKSCA-------GLSDLQRGKVIHQ---HLVCCGCSNDLFVDAALVDMYAKCGDIE 870

Query: 503 AARNLIEDMPMEPNDVIWRTLLSA 526
           AAR + + M +  + V W +++S 
Sbjct: 871 AARLVFDKMAVR-DLVSWTSMISG 893


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 196/520 (37%), Positives = 301/520 (57%), Gaps = 28/520 (5%)

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY--LEFARQLFDKMGIR 183
           +KAC  +    E  Q+H  L K     D  +   ++ L     +  + +A  +FD++  R
Sbjct: 22  IKACKSM---RELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPER 78

Query: 184 DSVSYNSMIDGYVKSGNIE-SARELFDSM---PIRERNLISWNSVLNG---YAQLKSGLQ 236
           +  ++N++I    ++ +    A  +F  M      E N  ++ SVL      A+L  G Q
Sbjct: 79  NCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQ 138

Query: 237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALF----------------DKMPKRD 280
               + +     D     ++L   V CG M+DA  LF                ++  + +
Sbjct: 139 VHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFN 198

Query: 281 VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQC 340
           VV    M+DGYA++G +  AR LFD M +R VV+ N M+ GY +NG+  +A+EIF  M  
Sbjct: 199 VVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQ 258

Query: 341 ELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE 400
              + P+  +LV VL AI++LG ++ G  +H Y EK++  ++   G AL+DMY+KCGSIE
Sbjct: 259 MGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIE 318

Query: 401 NAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460
            AI+VFE++   +V  WNA+I GLA+HG     F+ L  ME+  I P D+T+  +L+AC+
Sbjct: 319 KAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACS 378

Query: 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIW 520
           HAGLV EG   F  M     L+P+++HYGCMVD+LGRAG++E A  LI +MPM+P+DVIW
Sbjct: 379 HAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIW 438

Query: 521 RTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580
           + LL A + ++N+ +G   A+ L+ M   +S +YV LSNM+A  G W+    VR MMK+ 
Sbjct: 439 KALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMKDM 498

Query: 581 NLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +++K PGCSWIE++GV+HEF V D S  + +DI+ ML+ +
Sbjct: 499 DIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEI 538



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 136/490 (27%), Positives = 245/490 (50%), Gaps = 79/490 (16%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           ++ CK++ ++ Q+HA ++ TG   +  + T+++   ++S      +F R I +    F +
Sbjct: 22  IKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATS------DF-RDIGYALSVFDQ 74

Query: 81  --KKDPFLWNAIIKTYSHGLDPK-EALVMFCLMLDNG-VSVDKFSASLVLKACSRLGLIE 136
             +++ F WN +I+  +   D   +AL++FC ML    V  ++F+   VLKAC+ +  + 
Sbjct: 75  LPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLA 134

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLF--DKMGIRD---------- 184
           EG Q+HGLL K     D F+   L+ +YV CG +E A  LF  +  G+ D          
Sbjct: 135 EGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERG 194

Query: 185 ----SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQ 240
                V  N M+DGY + GN+++ARELFD M   +R+++SWN +++GYAQ     + A +
Sbjct: 195 REFNVVLCNVMVDGYARVGNLKAARELFDRMA--QRSVVSWNVMISGYAQ-NGFYKEAIE 251

Query: 241 IFEKM-------PERDLISWNSMLH-----GCVKCGKMDDAQALFDKMPKRDVVSWANMI 288
           IF +M       P R  ++  S+L      G ++ GK     A  +K+   DV+  A ++
Sbjct: 252 IFHRMMQMGDVLPNR--VTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSA-LV 308

Query: 289 DGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD 348
           D YAK G ++ A ++F+ +P+ +V+  NA++GG   +G +         M+ +  + P D
Sbjct: 309 DMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRME-KCGISPSD 367

Query: 349 ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ 408
            + + +LSA +  G +D+G +                     DM        N++ +  +
Sbjct: 368 VTYIAILSACSHAGLVDEGRSFFN------------------DMV-------NSVGLKPK 402

Query: 409 IEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
           IE     H+  M++ L   G  E A +L++ M    ++PDD+ +  LL A      +K G
Sbjct: 403 IE-----HYGCMVDLLGRAGYLEEAEELILNM---PMKPDDVIWKALLGASKMHKNIKIG 454

Query: 469 LLCFELMRRI 478
           +   E++ ++
Sbjct: 455 MRAAEVLMQM 464


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 197/509 (38%), Positives = 298/509 (58%), Gaps = 11/509 (2%)

Query: 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQL 176
           V++F ASL+ K+ S   L    LQIH  L +     +  L   L   Y   G L+ +  +
Sbjct: 47  VERF-ASLIDKSKSVAHL----LQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFV 101

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPI--RERNLISWNSVLNGYAQLKSG 234
           F+     +  S++++I  +V+S   + A   +  M     E N  +++SVL     L+SG
Sbjct: 102 FNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKS-CSLESG 160

Query: 235 LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKL 294
                Q  +     DL     ++    + G +  A+ LFDKMP+R +VS   M+  Y+K+
Sbjct: 161 KVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKM 220

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
           G +D AR LF+ M +RDVV  N M+GGY ++G   ++L++F  M     + P++ +++ V
Sbjct: 221 GELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAI-PNEVTVLAV 279

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
           LSA  QLG ++ G  IH Y+E     +N   G ALIDMYSKCGS+E+A  VF++I D  V
Sbjct: 280 LSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDV 339

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
             WN+MI G A+HG  + A  L  EM     +P DITF G+L+AC H GLV+EG   F L
Sbjct: 340 VAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRL 399

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534
           MR  + +EP+++HYGCMV++LGRAGH+E A  L+++M +  + V+W TLL  CR + N+ 
Sbjct: 400 MRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIK 459

Query: 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           +GE +AK L+    +NS +YVLLSNM+A  G W    ++R++MKE  ++K  GCS IE++
Sbjct: 460 LGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVD 519

Query: 595 GVVHEFFVRDKSRLQVRDIYYMLD--NMW 621
             VHEF   ++   + ++IY ML+  N W
Sbjct: 520 NKVHEFVAGERKHPKSKEIYVMLNEINSW 548



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/394 (30%), Positives = 206/394 (52%), Gaps = 28/394 (7%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           L+ K K++  + QIHA ++  G   N  L  KL  S+++      + F    F       
Sbjct: 53  LIDKSKSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTF------- 105

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           ++ + F ++AII ++        A   +  ML  GV  + F+ S VLK+CS    +E G 
Sbjct: 106 DEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGK 161

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
            +H    K+  GSDL+++  L+ +Y R G +  ARQLFDKM  R  VS  +M+  Y K G
Sbjct: 162 VLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMG 221

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLISWN---- 254
            ++ AR LF+ M  +ER+++ WN ++ GYAQ  SG+   + ++F +M     I       
Sbjct: 222 ELDKARSLFEGM--KERDVVCWNVMIGGYAQ--SGVPNESLKLFRRMLVAKAIPNEVTVL 277

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
           ++L  C + G ++  + +   +  +    +V     +ID Y+K G ++ AR +FD +  +
Sbjct: 278 AVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDK 337

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
           DVVA N+M+ GY  +G+S  AL++F+ M  E    P D + + +LSA    G +++G + 
Sbjct: 338 DVVAWNSMIVGYAMHGFSQHALQLFEEMT-ETGHKPTDITFIGILSACGHGGLVEEGRSF 396

Query: 371 HRYLEKDQFSLNGK--HGVALIDMYSKCGSIENA 402
            R L +D++ +  K  H   ++++  + G +E A
Sbjct: 397 FR-LMRDKYGIEPKIEHYGCMVNLLGRAGHLEEA 429



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 77/172 (44%), Gaps = 13/172 (7%)

Query: 16  STLLLLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           + L +L  C  L  +     IH+ +   G   N H+ T L+  +S   C  L E AR +F
Sbjct: 275 TVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSK--CGSL-EDARLVF 331

Query: 73  FKYHAFREKKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
            +       KD   WN++I  Y+ HG   + AL +F  M + G      +   +L AC  
Sbjct: 332 DRI----RDKDVVAWNSMIVGYAMHGFS-QHALQLFEEMTETGHKPTDITFIGILSACGH 386

Query: 132 LGLIEEGLQIHGLLR-KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI 182
            GL+EEG     L+R K      +    C+++L  R G+LE A  L   M I
Sbjct: 387 GGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTI 438


>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
          Length = 1198

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 178/463 (38%), Positives = 277/463 (59%), Gaps = 4/463 (0%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN 217
           N +I+  +    ++ A Q F  M  R++ S+N+MI G V+   +E A  LF+ MP   RN
Sbjct: 41  NSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMP--RRN 98

Query: 218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP 277
           +IS+ ++++GYA++   ++ A  +F  MP+++++SW  M+ G V+ GK D+A+ LF++MP
Sbjct: 99  VISYTAMVDGYAKI-GEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMP 157

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
            +++V+   MI GY K G+ D A+ LFD++P RD+ + NAM+ GY +NG   +AL++   
Sbjct: 158 DKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQ 217

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
           M  ++ + PD ++L+ VL+A + L  + +G   H  + K  +        ALI MY KCG
Sbjct: 218 M-LKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCG 276

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
           SI ++   F QI+   V  WNAMI   A HG  + A     EM    +EPD ITF  LL+
Sbjct: 277 SILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLS 336

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
           AC HAG V E L  F  M   +K+ P  +H+ C+VDIL R G +E A  +I++MP E + 
Sbjct: 337 ACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADC 396

Query: 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
            IW  LL+AC  + N+ +GE  AK ++ ++  NS +YV+LSN++A  GMW +  RVR +M
Sbjct: 397 GIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLM 456

Query: 578 KERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +E+ +KK P  SW+E++  VH F   D S  ++  I   L  M
Sbjct: 457 REQGVKKQPAYSWMEIDNKVHFFLGDDASHPEIHRIRLELKGM 499



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 161/361 (44%), Gaps = 83/361 (22%)

Query: 245 MPERDL-------------------------------ISWNSMLHGCVKCGKMDDAQALF 273
           MP RD                                +SWNSM+ GC++  ++D+A   F
Sbjct: 1   MPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYF 60

Query: 274 DKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE 333
             MP+R+  SW  MI G  +  RV+ A RLF+EMP+R+V++  AM+ GY + G   +A  
Sbjct: 61  QAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARA 120

Query: 334 IFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL-EKDQFSLNGKHGVALIDM 392
           +F+ M        +  S  +++S   + G  D+   +   + +K+  ++      A+I  
Sbjct: 121 LFNCMP-----QKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAM-----TAMITG 170

Query: 393 YSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITF 452
           Y K G  + A  +F+QI    +  WNAMI G A +G GE A  L  +M ++ ++PD  T 
Sbjct: 171 YCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTL 230

Query: 453 TGLLNACAHAGLVKEGL----------------LCFELM----------------RRIHK 480
             +L AC+    ++EG                 +C  L+                R+I  
Sbjct: 231 ISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQID- 289

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDM---PMEPNDVIWRTLLSAC----RNYENL 533
             P++  +  M+    R G  + A     +M    +EP+ + + +LLSAC    + +E+L
Sbjct: 290 -HPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESL 348

Query: 534 N 534
           N
Sbjct: 349 N 349



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 109/234 (46%), Gaps = 39/234 (16%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D   WNA+I  Y+     +EAL +   ML  G+  D  +   VL ACS L  ++EG + 
Sbjct: 190 RDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKT 249

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H L+ K  + S + + N LI++Y +CG +  +   F ++   D VS+N+MI  + + G  
Sbjct: 250 HVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHG-- 307

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
                              ++  L  + +++S             E D I++ S+L  C 
Sbjct: 308 ------------------FYDRALASFGEMRSN----------RVEPDGITFLSLLSACG 339

Query: 262 KCGKMDDAQALFDKM-------PKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
             GK+ ++   F+ M       P+ +   +A ++D  ++ G+V+ A ++  EMP
Sbjct: 340 HAGKVHESLNWFNSMIESYKIVPRPE--HFACLVDILSRGGQVEKAYKIIQEMP 391


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 227/693 (32%), Positives = 351/693 (50%), Gaps = 93/693 (13%)

Query: 4   SANYNQPC--NSTQSTLL-----LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASF 56
           SAN  Q C  N  +S  +     L R C  L     +HAR++ +  I+N  ++ KLV  +
Sbjct: 37  SANALQDCWKNGNESKEIDDVHTLFRYCTNLQSAKCLHARLVVSNAIQNVCISAKLVNLY 96

Query: 57  SSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCL-MLDNGV 115
                  L   ARY F   H     +D + WN +I  Y       E +  F L ML +G+
Sbjct: 97  CYLGNVAL---ARYTFDHIH----NRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGL 149

Query: 116 SVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQ 175
             D  +   VLKAC     + +G +IH L  K  F  D+++   LI LY R G +  AR 
Sbjct: 150 QPDYRTFPSVLKACRN---VTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARI 206

Query: 176 LFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD-------------------------- 209
           LFD+M  RD  S+N+MI GY +SGN + A  L D                          
Sbjct: 207 LFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAMDSVTVVSLLSACTEAGDFNRG 266

Query: 210 ----SMPIR---ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVK 262
               S  I+   E  L   N +++ YA+  S L+   ++F++M  RDLISWNS++     
Sbjct: 267 VTIHSYSIKHGLESELFVSNKLIDLYAEFGS-LKDCQKVFDRMYVRDLISWNSIIKAYEL 325

Query: 263 CGKMDDAQALFDKMPKRDV-------VSWANMIDG------------------------- 290
             +   A  LF +M    +       +S A+++                           
Sbjct: 326 NEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDIT 385

Query: 291 --------YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
                   YAKLG VD AR +F+ +P +DV++ N ++ GY +NG++ +A+E+++ M+ E 
Sbjct: 386 IGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEG 445

Query: 343 -YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIEN 401
             +  +  + V VL A +Q G + +G+ +H  L K+   L+   G +L DMY KCG +++
Sbjct: 446 GEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDD 505

Query: 402 AIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461
           A+ +F QI   +   WN +I     HG GE A  L  EM    ++PD ITF  LL+AC+H
Sbjct: 506 ALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSH 565

Query: 462 AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWR 521
           +GLV EG  CFE+M+  + + P L+HYGCMVD+ GRAG +E A N I+ MP++P+  IW 
Sbjct: 566 SGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWG 625

Query: 522 TLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581
            LLSACR + N+++G+  ++HL  ++  +   +VLLSNM+A  G W     +RS+   + 
Sbjct: 626 ALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKG 685

Query: 582 LKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           L+K PG S +E++  V  F+  +++     ++Y
Sbjct: 686 LRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMY 718


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 204/623 (32%), Positives = 329/623 (52%), Gaps = 42/623 (6%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           +H  +   GF  N  +   LVA +S   C  L + +  + F     +   D   WN+I+ 
Sbjct: 171 LHGLICCNGFESNVFVCNALVAMYSR--CGSLEDAS--LVFDEITRKGIDDVISWNSIVA 226

Query: 93  TYSHGLDPKEALVMFCLML------DNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
            +  G +P+ AL +F  M             D  S   +L AC+ L  + +  +IH    
Sbjct: 227 AHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAI 286

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           +    +D F+ N LI  Y +CG +  A ++F+ M  +D VS+N+M+ GY +SGN  +A E
Sbjct: 287 RNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFE 346

Query: 207 LFDSMPIRERNL----ISWNSVLNGYAQLKSGLQFAWQIFEKM----PERDLISWNSMLH 258
           LF++M  R+ N+    I+W++V+ GYAQ +   Q A   F++M     E + ++  S+L 
Sbjct: 347 LFENM--RKENIPLDVITWSAVIAGYAQ-RGCSQEALDAFQQMILDGSEPNSVTIISLLS 403

Query: 259 GCVKCGKMDDAQALFDKMPKRDVVS----------------WANMIDGYAKLGRVDIARR 302
            C   G +     +     K+ ++S                +  +ID Y+K      AR 
Sbjct: 404 ACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARS 463

Query: 303 LFDEMPKRD--VVACNAMMGGYVRNGYSMKALEIFDNMQCELY-LHPDDASLVIVLSAIA 359
           +FD +P+R+  VV    M+GGY + G S  AL+IF  M  + Y + P+  ++  +L A A
Sbjct: 464 IFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACA 523

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVA--LIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
            L  +  G  IH Y+ +        + VA  LIDMYSKCG ++ A  VF+ +   +   W
Sbjct: 524 HLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSW 583

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
            +M++G  +HG G+ A D+  +M++    PDDI+F  LL AC+H+G+V +GL  F++MRR
Sbjct: 584 TSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRR 643

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
            + +    +HY C++D+L R G ++ A   I++MPMEP+ VIW  LLSACR + N+ + E
Sbjct: 644 DYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAE 703

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVV 597
                L+ M + N  SY L+SN++A    W D  R+R +MK+  +KK PGCSW++ +   
Sbjct: 704 YALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGT 763

Query: 598 HEFFVRDKSRLQVRDIYYMLDNM 620
             FFV D+S     +IY +L+ +
Sbjct: 764 ASFFVGDRSHPLSPEIYSLLERL 786



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 170/556 (30%), Positives = 273/556 (49%), Gaps = 52/556 (9%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKL-VASFSSSPCTPLTEFARYIFFKYHAF 78
           LL++C+++N V QIH ++I  G +        + +A   S            +   Y A 
Sbjct: 37  LLKECRSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKSLGTGVVASYLAC 96

Query: 79  REKKDPF------------LWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVL 126
              KD               WN +++ +        A+ + C ML  G   D F+    L
Sbjct: 97  GATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPYAL 156

Query: 127 KACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM---GIR 183
           KAC  L     G  +HGL+    F S++F+ N L+++Y RCG LE A  +FD++   GI 
Sbjct: 157 KACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGID 216

Query: 184 DSVSYNSMIDGYVKSGNIESARELFD--SMPIRER------NLISWNSVLNGYAQLKSGL 235
           D +S+NS++  +VK  N  +A ELF   SM + E+      ++IS  ++L   A LK+  
Sbjct: 217 DVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALP 276

Query: 236 QF----AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGY 291
           Q     ++ I       D    N+++    KCG M+DA  +F+ M  +DVVSW  M+ GY
Sbjct: 277 QIKEIHSYAI-RNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGY 335

Query: 292 AKLGRVDIARRLFDEMPKR----DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD 347
            + G    A  LF+ M K     DV+  +A++ GY + G S +AL+ F  M  +    P+
Sbjct: 336 TQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGS-EPN 394

Query: 348 DASLVIVLSAIAQLGHIDKGVAIHRY-LEKDQFSLNGKHGV-----------ALIDMYSK 395
             +++ +LSA A LG + +G+ IH Y L+K   SL+   G            ALIDMYSK
Sbjct: 395 SVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSK 454

Query: 396 CGSIENAIKVFEQI--EDGSVDHWNAMINGLAIHGLGELAFDLLMEM--ERLSIEPDDIT 451
           C S + A  +F+ I   + +V  W  MI G A +G    A  +  EM  +  ++ P+  T
Sbjct: 455 CRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYT 514

Query: 452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG-CMVDILGRAGHIEAARNLIED 510
            + +L ACAH   ++ G      + R H+ EP +     C++D+  + G ++ ARN+ + 
Sbjct: 515 ISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDS 574

Query: 511 MPMEPNDVIWRTLLSA 526
           MP + N+V W +++S 
Sbjct: 575 MP-KRNEVSWTSMMSG 589


>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 710

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 192/548 (35%), Positives = 313/548 (57%), Gaps = 45/548 (8%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           +  +I  +S      +A+ +F  M + GV  ++ + + ++ A S  G I     +HGL+ 
Sbjct: 166 YTTMIMGFSQNECWNQAVELFKQMRNVGVVPNEVTIATLVSAYSHFGGIWACRMLHGLVI 225

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           K+ F   + +   L+ +Y  C  L  AR LFD+M  ++ VS+N M++GY K+G ++SAR 
Sbjct: 226 KMLFEEFVLVSTNLLRMYCVCSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARV 285

Query: 207 LFDSMPIRERNLISWNSVLNGYAQL----------KSGLQFAWQIFEKMPERDLIS---- 252
           +F+ +P   ++L++W ++++GY ++          +S +   W+  + M   DLIS    
Sbjct: 286 VFERIP--NKDLVTWGTIIDGYVRVERINEALMMYRSMISAGWEPNDVM-MVDLISGCGR 342

Query: 253 -------------------------WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANM 287
                                     ++++H    CG++++A   F    K +V SW  +
Sbjct: 343 TMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRINEACLQFRIGSKENVASWNAL 402

Query: 288 IDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD 347
           I GY +   +D A  LF+EMP+RDV + + M+ GY +N     ALE+F  M     + P+
Sbjct: 403 IAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPNLALELFHKMVAS-GIKPN 461

Query: 348 DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFE 407
           + ++V VLSAIA  G + +G   H Y+  +  +++     A+IDMY+KCGSI NA++VF 
Sbjct: 462 EVTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVSDNLSAAIIDMYAKCGSINNALEVFY 521

Query: 408 QIED--GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLV 465
           +I +   +V  WNA+I GLA+HG   L+  +  ++ER  I+ + ITF G+L AC H GLV
Sbjct: 522 EIREKASTVSPWNAIICGLAVHGHANLSLKIFSDLERRHIKLNAITFIGVLTACCHVGLV 581

Query: 466 KEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLS 525
           + G   F  M+  H ++P+++HYGCMVD+LGRAG +E A  +I  MPM+ + VIW TLL+
Sbjct: 582 ESGKRHFMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEEAEEMIRSMPMKADVVIWGTLLA 641

Query: 526 ACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKL 585
           ACR + N++VGE  A++L  ++ S+ +S VLLSNM+A  G W DA  VR  M+   +++L
Sbjct: 642 ACRTHGNVDVGERAAENLARLEPSHGASRVLLSNMYADAGKWEDAFLVRRAMQSHRMQRL 701

Query: 586 PGCSWIEL 593
           PG S + L
Sbjct: 702 PGYSGVAL 709



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 152/526 (28%), Positives = 250/526 (47%), Gaps = 96/526 (18%)

Query: 52  LVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFL-WNAIIKTYSHGLDPKEALVMFCLM 110
           L+ S  S P + L   +  I      F+++++PFL  N++       L+PK     F   
Sbjct: 14  LITSPFSYPASSLKWVSTEILKIPQIFQQQENPFLHLNSL-------LNPKTGQRHF--- 63

Query: 111 LDNGVSVDKFSASLV--LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCG 168
                    +   LV  LK CS    + +G QIH L+ K   GS+ F+QN LI++Y +CG
Sbjct: 64  --------NYELVLVSALKFCSDHLFLSQGKQIHCLVSKSGLGSNNFIQNSLINMYGKCG 115

Query: 169 YLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGY 228
            L  A+ +FD     D VSYN MI GYVKSG ++ A ELFD MP+  +  +S+ +++ G+
Sbjct: 116 LLVDAKSIFDVCPRSDPVSYNVMISGYVKSGQLDYACELFDEMPV--KGCVSYTTMIMGF 173

Query: 229 AQLKSGLQFAWQIFEKM------PERDLIS------------WN-SMLHGCV-------- 261
           +Q +   Q A ++F++M      P    I+            W   MLHG V        
Sbjct: 174 SQNECWNQ-AVELFKQMRNVGVVPNEVTIATLVSAYSHFGGIWACRMLHGLVIKMLFEEF 232

Query: 262 ------------KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
                        C  + +A+ALFD+MP++++VSW  M++GY+K G VD AR +F+ +P 
Sbjct: 233 VLVSTNLLRMYCVCSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPN 292

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLV----------------I 353
           +D+V    ++ GYVR     +AL ++ +M    +  P+D  +V                 
Sbjct: 293 KDLVTWGTIIDGYVRVERINEALMMYRSMISAGW-EPNDVMMVDLISGCGRTMAMTEGQQ 351

Query: 354 VLSAIAQLGH----IDKGVAIHRYLEKD-------QFSLNGKHGV----ALIDMYSKCGS 398
           +LSA+ ++G       +   IH Y           QF +  K  V    ALI  Y +   
Sbjct: 352 LLSAVVKMGFDCYDFIQSTIIHLYAACGRINEACLQFRIGSKENVASWNALIAGYVRNRM 411

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
           I+ A+++F ++ +  V  W+ MI+G   +    LA +L  +M    I+P+++T   +L+A
Sbjct: 412 IDRAMELFNEMPERDVFSWSTMISGYTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSA 471

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504
            A +G +KEG    E +   + +         ++D+  + G I  A
Sbjct: 472 IATSGTLKEGRWAHEYVHN-NSITVSDNLSAAIIDMYAKCGSINNA 516



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 191/391 (48%), Gaps = 27/391 (6%)

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           AR +F +       KD   W  II  Y       EAL+M+  M+  G   +      ++ 
Sbjct: 283 ARVVFERI----PNKDLVTWGTIIDGYVRVERINEALMMYRSMISAGWEPNDVMMVDLIS 338

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSV- 186
            C R   + EG Q+   + K+ F    F+Q+ +I LY  CG +  A   F ++G +++V 
Sbjct: 339 GCGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRINEACLQF-RIGSKENVA 397

Query: 187 SYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP 246
           S+N++I GYV++  I+ A ELF+ MP  ER++ SW+++++GY Q +     A ++F KM 
Sbjct: 398 SWNALIAGYVRNRMIDRAMELFNEMP--ERDVFSWSTMISGYTQNEQP-NLALELFHKMV 454

Query: 247 ERDL----ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANM----IDGYAKLGRVD 298
              +    ++  S+L      G + + +   + +    +    N+    ID YAK G ++
Sbjct: 455 ASGIKPNEVTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVSDNLSAAIIDMYAKCGSIN 514

Query: 299 IARRLFDEMPKR--DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
            A  +F E+ ++   V   NA++ G   +G++  +L+IF +++   ++  +  + + VL+
Sbjct: 515 NALEVFYEIREKASTVSPWNAIICGLAVHGHANLSLKIFSDLE-RRHIKLNAITFIGVLT 573

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNG--KHGVALIDMYSKCGSIENAIKVFEQIE-DGS 413
           A   +G ++ G   H    K + S++   KH   ++D+  + G +E A ++   +     
Sbjct: 574 ACCHVGLVESG-KRHFMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEEAEEMIRSMPMKAD 632

Query: 414 VDHWNAMINGLAIHG---LGELAFDLLMEME 441
           V  W  ++     HG   +GE A + L  +E
Sbjct: 633 VVIWGTLLAACRTHGNVDVGERAAENLARLE 663


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 212/659 (32%), Positives = 342/659 (51%), Gaps = 88/659 (13%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           +HA ++  G +++  ++T+LV  +++     L+   R  F +      +KD + WN++I 
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLS---RCTFDQI----PQKDVYAWNSMIS 190

Query: 93  TYSHGLDPKEALVMFC-LMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
            Y H     EA+  F  L+L + +  D ++   VLKAC   G + +G +IH    K+ F 
Sbjct: 191 AYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQ 247

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
            ++F+   LI +Y R G+   AR LFD M  RD  S+N+MI G +++GN   A ++ D M
Sbjct: 248 WNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEM 307

Query: 212 PIR--ERNLISWNSVLNGYAQL--------------KSGLQF------------------ 237
            +   + N ++  S+L    QL              K GL+F                  
Sbjct: 308 RLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNL 367

Query: 238 --AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP------------------ 277
             A + F++M   D++SWNS++    +      A   F KM                   
Sbjct: 368 EDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIV 427

Query: 278 ----------------------KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
                                   DVV    ++D YAKLG +D A ++F+ +P +DV++ 
Sbjct: 428 AQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISW 487

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           N ++ GY +NG + +A+E++  M+    + P+  + V +L A A +G + +G+ IH  + 
Sbjct: 488 NTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVI 547

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           K    L+      LID+Y KCG + +A+ +F Q+   S   WNA+I+   IHG  E    
Sbjct: 548 KTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLK 607

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           L  EM    ++PD +TF  LL+AC+H+G V+EG  CF LM+  + ++P L+HYGCMVD+L
Sbjct: 608 LFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLL 666

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           GRAG++E A + I+DMP++P+  IW  LL ACR + N+ +G+  +  L  +DS N   YV
Sbjct: 667 GRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYV 726

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           LLSN++A +G W    +VRS+ +ER LKK PG S IE+   V  F+  ++S  + ++IY
Sbjct: 727 LLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIY 785


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 189/498 (37%), Positives = 288/498 (57%), Gaps = 16/498 (3%)

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSD-----LFLQNCLISLYVRCGYLEFARQLFDKM 180
           L+ CS+    EE  QIH  + K     D      FL  C+ S      +L +A+ +FD  
Sbjct: 21  LQRCSKQ---EELKQIHARMLKTGLMQDSYAITKFLSFCISS--TSSDFLPYAQIVFDGF 75

Query: 181 GIRDSVSYNSMIDGYVKSGNIESARELFDSM--PIRERNLISWNSVLNGYAQLKS---GL 235
              D+  +N MI G+  S   E +  L+  M       N  ++ S+L   + L +     
Sbjct: 76  DRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETT 135

Query: 236 QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG 295
           Q   QI +   E D+ + NS+++     G    A  LFD++P+ D VSW ++I GY K G
Sbjct: 136 QIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAG 195

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
           ++DIA  LF +M +++ ++   M+ GYV+   + +AL++F  MQ    + PD+ SL   L
Sbjct: 196 KMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQ-NSDVEPDNVSLANAL 254

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
           SA AQLG +++G  IH YL K +  ++   G  LIDMY+KCG +E A++VF+ I+  SV 
Sbjct: 255 SACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQ 314

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            W A+I+G A HG G  A    MEM+++ I+P+ ITFT +L AC++ GLV+EG L F  M
Sbjct: 315 AWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSM 374

Query: 476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNV 535
            R + L+P ++HYGC+VD+LGRAG ++ A+  I++MP++PN VIW  LL ACR ++N+ +
Sbjct: 375 ERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIEL 434

Query: 536 GEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG 595
           GE + + LI +D  +   YV  +N+ A    W+ A   R +MKE+ + K+PGCS I LEG
Sbjct: 435 GEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEG 494

Query: 596 VVHEFFVRDKSRLQVRDI 613
             HEF   D+S  ++  I
Sbjct: 495 TTHEFLAGDRSHPEIEKI 512



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/438 (28%), Positives = 234/438 (53%), Gaps = 21/438 (4%)

Query: 17  TLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           T+  L++C    ++ QIHARM+ TG +++++  TK ++   SS  +    +A+ +F  + 
Sbjct: 17  TMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGF- 75

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
              ++ D FLWN +I+ +S   +P+ +L+++  ML +    + ++   +LKACS L   E
Sbjct: 76  ---DRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFE 132

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           E  QIH  + K+ + +D++  N LI+ Y   G  + A  LFD++   D VS+NS+I GYV
Sbjct: 133 ETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYV 192

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLIS 252
           K+G ++ A  LF  M   E+N ISW ++++GY Q     + A Q+F +M     E D +S
Sbjct: 193 KAGKMDIALTLFRKMA--EKNAISWTTMISGYVQADMNKE-ALQLFHEMQNSDVEPDNVS 249

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMP 308
             + L  C + G ++  + +   + K     D V    +ID YAK G ++ A  +F  + 
Sbjct: 250 LANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIK 309

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
           K+ V A  A++ GY  +G+  +A+  F  MQ ++ + P+  +   VL+A +  G +++G 
Sbjct: 310 KKSVQAWTALISGYAYHGHGREAISKFMEMQ-KMGIKPNVITFTAVLTACSYTGLVEEGK 368

Query: 369 AIHRYLEKD-QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAI 426
            I   +E+D       +H   ++D+  + G ++ A +  +++    +   W A++    I
Sbjct: 369 LIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRI 428

Query: 427 HG---LGELAFDLLMEME 441
           H    LGE   ++L+ ++
Sbjct: 429 HKNIELGEEIGEILIAID 446


>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
 gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 184/489 (37%), Positives = 288/489 (58%), Gaps = 9/489 (1%)

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVR-CGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
           +IH  L K     D    + +++      G + +A  +F ++   +   +N++I G+ +S
Sbjct: 14  KIHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWNTIIRGFSQS 73

Query: 199 GNIESARELFDSM----PIRERNLISWNSVLNGYAQL---KSGLQFAWQIFEKMPERDLI 251
               +A  LF  M    P  +   +++ SV   YAQL     G Q   ++ +   E D  
Sbjct: 74  STPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLGLENDQF 133

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
             N++L+  V CG + +AQ +FD     DVV+W  MI G AK G +D +RRLFD+M  R+
Sbjct: 134 IQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRN 193

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
            V+ N+M+ GYVR G   +A+E+F  MQ E  + P + ++V +L+A A LG + +G  IH
Sbjct: 194 TVSWNSMISGYVRKGRFFEAMELFSRMQ-EEGIKPSEFTMVSLLNACACLGALRQGEWIH 252

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
            Y+ K+ F+LN     A+IDMYSKCGSI+ A++VF+      +  WN++I GLA+ G G 
Sbjct: 253 DYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGN 312

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            A  L  ++E  +++PD ++F G+L AC HAG+V      F LM   +K+EP ++HY CM
Sbjct: 313 EAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCM 372

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551
           VD+LGRAG +E A  LI+ MP+ P+ +IW +LLS+CR Y N+ + +  AK +  +D + S
Sbjct: 373 VDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMAKQAAKRVNELDPNES 432

Query: 552 SSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVR 611
           SS++LLSN++A    + +A   R  +KE+ + K PGCS IE+ G VHEF    +   + +
Sbjct: 433 SSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEPGCSLIEVNGEVHEFVAGGRLHPRSK 492

Query: 612 DIYYMLDNM 620
           DIY+ LD++
Sbjct: 493 DIYHALDDL 501



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 144/500 (28%), Positives = 256/500 (51%), Gaps = 63/500 (12%)

Query: 19  LLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAF 78
           +L + C ++ D+ +IHA++I TG  K+T   ++++A F +SP       A  I + Y  F
Sbjct: 1   MLDKNCTSMKDLQKIHAQLIKTGLAKDTIAASRVLA-FCTSP-------AGDINYAYLVF 52

Query: 79  REKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVD--KFSASLVLKACSRLGL 134
            + ++P  F+WN II+ +S    P  A+ +F  M+    +    + +   V KA ++LGL
Sbjct: 53  TQIRNPNLFVWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGL 112

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
             EG Q+HG + K+   +D F+QN ++++YV CG+L  A+++FD     D V++N+MI G
Sbjct: 113 AHEGAQLHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIG 172

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF-AWQIFEKMPERDL--- 250
             K G I+ +R LFD M +  RN +SWNS+++GY  ++ G  F A ++F +M E  +   
Sbjct: 173 LAKCGEIDKSRRLFDKMLL--RNTVSWNSMISGY--VRKGRFFEAMELFSRMQEEGIKPS 228

Query: 251 -ISWNSMLHGCVKCGKMDDAQALFDKMPKRDV----VSWANMIDGYAKLGRVDIARRLFD 305
             +  S+L+ C   G +   + + D + K +     +    +ID Y+K G +D A ++F 
Sbjct: 229 EFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFK 288

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
             PK+ +   N+++ G   +G   +A+ +F  ++    L PD  S + VL+A    G +D
Sbjct: 289 SAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESS-NLKPDHVSFIGVLTACNHAGMVD 347

Query: 366 KGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
           +         KD F L            S+   IE +IK           H++ M++ L 
Sbjct: 348 RA--------KDYFLL-----------MSETYKIEPSIK-----------HYSCMVDVLG 377

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP-E 484
             GL E A +L+  M    + PD I +  LL++C   G ++   +  +  +R+++L+P E
Sbjct: 378 RAGLLEEAEELIKSM---PVNPDAIIWGSLLSSCREYGNIE---MAKQAAKRVNELDPNE 431

Query: 485 LQHYGCMVDILGRAGHIEAA 504
              +  + ++     H E A
Sbjct: 432 SSSFILLSNVYAAHNHFEEA 451


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 211/619 (34%), Positives = 325/619 (52%), Gaps = 69/619 (11%)

Query: 3   VSANYNQPCNSTQSTLL-LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPC 61
           +SA +  P   T++  + L+   KT+  ++QIHA++I      ++ +TT+L++S S    
Sbjct: 69  LSALFIPPTTPTEAHFISLIHGSKTILQLHQIHAQIIIHNLSSSSLITTQLISSSSLRKS 128

Query: 62  TPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFS 121
              +       F +H   + K+ F +NA+I+  +       A+  F LML +G+  D+ +
Sbjct: 129 INHS----LAVFNHH---KPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLT 181

Query: 122 ASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
              VLK+ + L   E G+ IH                C+I   +RCG +E          
Sbjct: 182 YPFVLKSMAGLFSTELGMAIH----------------CMI---LRCG-IEL--------- 212

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQI 241
             DS    S++D YVK   + SA ++FD  P R                  SG       
Sbjct: 213 --DSFVRVSLVDMYVKVEKLGSAFKVFDESPER----------------FDSG------- 247

Query: 242 FEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIAR 301
                    + WN ++ GC K G M  A  LF  MPK++ VSW+ +IDG+AK G +D A 
Sbjct: 248 ------SSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAM 301

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
            LFD+MP+++VV+   M+ G+ RNG S KAL +F  M  E  + P+  ++V  LSA A++
Sbjct: 302 ELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKM-LEEGVRPNAFTIVSALSACAKI 360

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
           G ++ G+ IH+Y++ +   L    G AL+DMY+KCG+IE+A +VF + E  S+  W  MI
Sbjct: 361 GGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMI 420

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
            G AIHG  E A     +M    I+PD++ F  LL AC H+G V  GL  F+ MR  + +
Sbjct: 421 WGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCI 480

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
           EP ++HY  +VD+LGR+G ++ A   IE MPM P+ VIW  L  ACR ++   + +    
Sbjct: 481 EPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALN 540

Query: 542 HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
            L+ ++ +++ +Y+ LSN +A LG W DA RVR +M+ R + K  G S IE+EG VH F 
Sbjct: 541 KLLKLEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKNSGWSCIEVEGQVHRFV 600

Query: 602 VRDKSRLQVRDIYYMLDNM 620
             D      + I   L+ +
Sbjct: 601 SGDHDHKDSKAICLKLEEI 619


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 199/592 (33%), Positives = 326/592 (55%), Gaps = 49/592 (8%)

Query: 30  VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNA 89
           + QIHAR++  G   +  L TKL+   +SS    +T FAR +F        +   F WNA
Sbjct: 37  LRQIHARLLVLGLQFSGFLITKLI--HASSSYGDIT-FARQVFDDL----PRPQVFPWNA 89

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA 149
           II+ YS     ++AL+M+  M    VS D F+   +LKAC  L  ++ G  +H  + ++ 
Sbjct: 90  IIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLG 149

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD 209
           F +D+F+QN LI+LY +C  L                                 AR +F+
Sbjct: 150 FEADVFVQNGLIALYAKCRRLG-------------------------------CARTVFE 178

Query: 210 SMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----ISWNSMLHGCVKCGK 265
            +P+ ER ++SW ++++ YAQ    ++ A +IF +M + D+    ++  S+L+       
Sbjct: 179 GLPLPERTIVSWTAIVSAYAQNGEPVE-ALEIFSQMRKMDVKPDCVALVSVLNAFTCLQD 237

Query: 266 MDDAQALFDKMPKRDVVSWANMIDG----YAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
           ++  +++   + K  + +  +++      YAK G+V  A+ LFD+M   +++  NAM+ G
Sbjct: 238 LEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISG 297

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
           Y +NG++  A+++F  M     + PD  S+   +SA AQ+G +++   +  Y+ +  +  
Sbjct: 298 YAKNGFAKDAIDLFHEM-INKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRD 356

Query: 382 NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEME 441
           +     ALIDM++KCGS+E A  VF++  D  V  W+AMI G  +HG    A  L   ME
Sbjct: 357 DVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAME 416

Query: 442 RLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHI 501
           R  + P+D+TF GLL AC H+G+V+EG   F  M   HK+ P+ QHY C++D+LGRAGH+
Sbjct: 417 RDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMAD-HKINPQQQHYACIIDLLGRAGHL 475

Query: 502 EAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF 561
           + A  +I+ MP++P   +W  LLSAC+ + ++ +G+  A+ L  +D SN+  YV LSN++
Sbjct: 476 DQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLY 535

Query: 562 AGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
           A   +W+    VR  MKE+ L K  GCSW+E+ G +  F V DKS  +  +I
Sbjct: 536 AAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRYEEI 587



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 114/440 (25%), Positives = 200/440 (45%), Gaps = 50/440 (11%)

Query: 20  LLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           LL+ C  L+ +     +HA++   GF  +  +   L+A ++   C  L   AR +F    
Sbjct: 125 LLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAK--CRRLG-CARTVFEGLP 181

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
               ++    W AI+  Y+   +P EAL +F  M    V  D  +   VL A + L  +E
Sbjct: 182 L--PERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLE 239

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           +G  IH  + K+   ++  L   L ++Y +CG +  A+ LFDKM   + + +N+MI GY 
Sbjct: 240 QGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYA 299

Query: 197 KSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQLKSGLQFAW--QIFEKMPERDLIS 252
           K+G  + A +LF  M  ++   + IS  S ++  AQ+ S  Q  W  +   +   RD + 
Sbjct: 300 KNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVF 359

Query: 253 WNS-MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
            +S ++    KCG ++ A+++FD+   RDVV W+ MI GY   G+   A  L+  M +RD
Sbjct: 360 ISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAM-ERD 418

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
            V                               HP+D + + +L A    G + +G    
Sbjct: 419 GV-------------------------------HPNDVTFLGLLIACNHSGMVREGWWFF 447

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFE--QIEDGSVDHWNAMINGLAIHGL 429
             +   + +   +H   +ID+  + G ++ A +V +   ++ G V  W A+++    H  
Sbjct: 448 NRMADHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPG-VTVWGALLSACKKHRH 506

Query: 430 GELAFDLLMEMERLSIEPDD 449
            EL      ++   SI+P +
Sbjct: 507 VELGKYAAQQL--FSIDPSN 524


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 177/455 (38%), Positives = 277/455 (60%), Gaps = 4/455 (0%)

Query: 166 RCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVL 225
           R G ++ ARQLFD++   D  SYN M+  Y+ + ++ESAR  FD MP+++    SWN+++
Sbjct: 49  RRGKIKVARQLFDRIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKD--TASWNTMI 106

Query: 226 NGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWA 285
           +G++Q    +  A ++F  MP R+ +SWN+M+ G V+ G +D A+ LF+  P R VV+W 
Sbjct: 107 SGFSQ-NGMMDQARELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWT 165

Query: 286 NMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLH 345
            MI G+ K G++++A + F+EMP +++V  NAM+ GY+ N  +   L++F  M  E    
Sbjct: 166 AMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRM-VESGFR 224

Query: 346 PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKV 405
           P+ +SL  VL   + L  +  G  +H+ + K   S N   G +L+ MY KCG +E+A K+
Sbjct: 225 PNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKL 284

Query: 406 FEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLV 465
           F  +    V  WNAMI+G A HG GE A  L  +M    ++PD ITF  +L+AC HAG V
Sbjct: 285 FLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFV 344

Query: 466 KEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLS 525
             G+  F  M R + +E +  HY C+VD+LGR G +  A +LI+ MP +P+  I+ TLL 
Sbjct: 345 DLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLG 404

Query: 526 ACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKL 585
           ACR ++NL + E  AK+L+ +D  +++ YV L+N++A +  W+    VR  MK+  + K 
Sbjct: 405 ACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKT 464

Query: 586 PGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           PG SWIE++ VVHEF   D+   ++  I+  L+ +
Sbjct: 465 PGYSWIEVKSVVHEFRSGDRIHPELAFIHEKLNEL 499



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 72/138 (52%)

Query: 74  KYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLG 133
           KY      K+   WNA+I  Y      +  L +F  M+++G   +  S S VL  CS L 
Sbjct: 182 KYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLS 241

Query: 134 LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMID 193
            ++ G Q+H L+ K     ++     L+S+Y +CG LE A +LF  M  +D V++N+MI 
Sbjct: 242 ALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMIS 301

Query: 194 GYVKSGNIESARELFDSM 211
           GY + G  E A  LFD M
Sbjct: 302 GYAQHGAGEKALYLFDKM 319



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 8/182 (4%)

Query: 3   VSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCT 62
           V + +    +S  S LL       L    Q+H  +  +    N    T L++ +    C 
Sbjct: 219 VESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCK--CG 276

Query: 63  PLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSA 122
            L +      +K      +KD   WNA+I  Y+     ++AL +F  M D G+  D  + 
Sbjct: 277 DLEDA-----WKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITF 331

Query: 123 SLVLKACSRLGLIEEGLQ-IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
             VL AC+  G ++ G++  + ++R     +      C++ L  R G L  A  L  KM 
Sbjct: 332 VAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMP 391

Query: 182 IR 183
            +
Sbjct: 392 FK 393


>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 2000

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 198/595 (33%), Positives = 319/595 (53%), Gaps = 51/595 (8%)

Query: 72  FFKYHAFRE-----KKDPFL----WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSA 122
           F KY   RE     +++PF     W A I  Y       EA+ +F  +L++ V  +K + 
Sbjct: 128 FMKYGRVRESMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTF 187

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI 182
           + V++AC+ LG    G+ + GL+ K  +  DL + N LI+L +R G +  AR++FD+M  
Sbjct: 188 TSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEE 247

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ------------ 230
           +D VS+ +++D YV+   +  AR +FD MP  +RN +SW++++  Y Q            
Sbjct: 248 KDVVSWTAILDLYVEMDELGEARRIFDEMP--QRNEVSWSAMIARYCQSGYPEESLRLFC 305

Query: 231 --------------------------LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCG 264
                                     L++G+     + +   E+D+   +S++    KCG
Sbjct: 306 RMIQEGFKPNISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCG 365

Query: 265 KMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVR 324
           +  D + LFD + ++++VSW  M+ GY+  G ++ A+ LF+ MP R+ V+ +A++ G++ 
Sbjct: 366 ETKDGRFLFDTILEKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLD 425

Query: 325 NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK 384
                +  E+F+ M   L   P+ ++   +L A A    +DKG  +H  + K     +  
Sbjct: 426 CEQFDEMFEVFNEMIL-LGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTY 484

Query: 385 HGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS 444
            G AL DMY+K G IE++ KVF ++   +   W AMI GLA  GL E +  L  EME+ S
Sbjct: 485 VGTALTDMYAKSGDIESSKKVFNRMPKKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTS 544

Query: 445 -IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503
            I P+++ F  +L AC+H+GLV +GL  F  M  ++ L+P+ +H+ C+VD+L RAG +  
Sbjct: 545 SIAPNEVMFLAVLFACSHSGLVDKGLWYFNSMEAVYGLKPKGRHFTCVVDMLSRAGRLFE 604

Query: 504 ARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563
           A   I  MP +P    W  LLS C+ Y+N  + E VA  L  M   N + YVLLSN++A 
Sbjct: 605 AEEFIYSMPFQPETNAWAALLSGCKTYKNEELAERVAGKLWEMAEKNCAGYVLLSNIYAS 664

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
            G W D  +VR +MK + LKK  GCSW+E+   VH F+  D +  Q  +IY +L+
Sbjct: 665 AGRWRDVLKVRKLMKAKGLKKSGGCSWVEIRDRVHSFYSEDGAHSQSAEIYEILE 719



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 164/350 (46%), Gaps = 47/350 (13%)

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
           A QI +     DL+  N M+   V+ G +D+A+ LFD+MP+ + +SW  +I G+ K GRV
Sbjct: 75  ADQISKDFDGFDLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRV 134

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
             +   F+  P ++VV+  A + GYV+NG+S++A+++F  +  E  + P+  +   V+ A
Sbjct: 135 RESMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKL-LESEVKPNKVTFTSVVRA 193

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
            A LG    G+++   + K  +  +     +LI +  + G I  A +VF+++E+  V  W
Sbjct: 194 CANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSW 253

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
            A++             DL +EM+ L                       E    F+ M +
Sbjct: 254 TAIL-------------DLYVEMDELG----------------------EARRIFDEMPQ 278

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPME---PNDVIWRTLLSACRNYENLN 534
            +++      +  M+    ++G+ E +  L   M  E   PN   + ++LSA  + E L 
Sbjct: 279 RNEVS-----WSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSALASVEALQ 333

Query: 535 VGEPVAKHL--IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
            G  +  H+  IG +     S  L+ +M+   G   D R +   + E+N+
Sbjct: 334 AGMNIHGHVTKIGFEKDVFVSSSLI-DMYCKCGETKDGRFLFDTILEKNM 382



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 173/408 (42%), Gaps = 53/408 (12%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +LK  +  GLI +G  +H  L K    S+ ++   L+ +Y+       A Q+       D
Sbjct: 27  LLKNLTNQGLIRDGSALHAHLFKTGISSEQYISIKLLIMYLNYRKSAEADQISKDFDGFD 86

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244
            V +N MI   V+ GN++ AR+LFD                                  +
Sbjct: 87  LVVHNCMISANVQRGNLDEARKLFD----------------------------------E 112

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
           MP+ + ISW +++ G +K G++ ++   F++ P ++VVSW   I GY + G    A +LF
Sbjct: 113 MPQTNEISWTALISGFMKYGRVRESMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLF 172

Query: 305 DEMPKRDVVACNAMMGGYVRN-------GYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
            ++ + +V          VR        G  M  L +      E  L   ++ + + L  
Sbjct: 173 IKLLESEVKPNKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCL-- 230

Query: 358 IAQLGHIDKGVAI-HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
             ++G I     +  R  EKD  S       A++D+Y +   +  A ++F+++   +   
Sbjct: 231 --RMGEIHLAREVFDRMEEKDVVSW-----TAILDLYVEMDELGEARRIFDEMPQRNEVS 283

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           W+AMI      G  E +  L   M +   +P+   F+ +L+A A    ++ G+     + 
Sbjct: 284 WSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSALASVEALQAGMNIHGHVT 343

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
           +I   E ++     ++D+  + G  +  R L  D  +E N V W  ++
Sbjct: 344 KI-GFEKDVFVSSSLIDMYCKCGETKDGRFLF-DTILEKNMVSWNAMV 389


>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
 gi|223947871|gb|ACN28019.1| unknown [Zea mays]
 gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
          Length = 651

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 200/643 (31%), Positives = 332/643 (51%), Gaps = 78/643 (12%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L +C +   + QIHA+ + +G + + +  ++L+   +S+    L     +   +      
Sbjct: 11  LSRCCSARHLLQIHAQFLASGLLADAYAASRLLLFTTSATAARLLPHPLHHSLQLFGLVR 70

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
             + F  N ++K       P     ++  M     + D ++  L+  AC+  G + EGLQ
Sbjct: 71  SPNAFTCNTLLKAALRQGFPHLCFPLYASM---PAAPDTYTHPLLAAACAARGDVREGLQ 127

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H    K  F  +L+L+N L+ +Y  CG +  AR++FD   + D+VS+N+++  YV+ G+
Sbjct: 128 VHSHSVKHGFSDNLYLRNALMHMYSACGCVASARRVFDAGPVWDAVSWNTILATYVRDGD 187

Query: 201 IES-------------------------------ARELFDSMPIRERNLISWNSVLNGYA 229
           +E                                AR +FD      R+  +W ++++ + 
Sbjct: 188 VEQAVKVFTRMPERSAAAVSAMVALFARRGMVEEARGVFDG--AEHRDAFTWTAMVSCFE 245

Query: 230 QLKSGLQFAWQIFEKMPER----DLISWNSMLHGCVKCGKMDD----------------- 268
           +    ++ A  +F  M E     D     S++  C K G + +                 
Sbjct: 246 RNDLFME-ALAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGEVCHGLVVRAGLGSRV 304

Query: 269 ------------------AQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
                             A+ LFD     D  SW +MI GY K GRV+ A+ LFD MP +
Sbjct: 305 NVQNVLIHMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYLKNGRVEDAKALFDVMPDK 364

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
           D V+ +AM+ G V N  S +AL +FD+M+    + PDD +LV V+SA + L  +++G  +
Sbjct: 365 DNVSWSAMIAGCVHNNQSSEALNVFDSMRAH-EIKPDDVTLVSVISACSNLSALEQGKLV 423

Query: 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
           H Y+ K Q+++    G +LIDMY KCG +E A++VF+ +E+     WNA+I GLA++GL 
Sbjct: 424 HEYIRKYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMLEEKGTPCWNAVIVGLAMNGLV 483

Query: 431 ELAFDLLMEMERLSIE-PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
             + D+  EME      P++ITFTG+L+AC H GLV+EG   F+LM+  +++ P ++HYG
Sbjct: 484 TRSLDMFSEMEATGTAVPNEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIVPNIRHYG 543

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549
           CMVD+LGRAG++  A ++I+ MPM P+   W  LL AC  + +  VGE V K L+ +D  
Sbjct: 544 CMVDLLGRAGYVREAEDMIQSMPMSPDVPAWGALLGACWKHGDSEVGERVGKKLVKLDPD 603

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           +     +LSN++A  GMW   + +R  MK++++ K+ GCS +E
Sbjct: 604 HDGFQTMLSNIYASEGMWQCVKDLRGSMKQQHVAKVAGCSMVE 646


>gi|215741011|dbj|BAG97506.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 483

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 199/517 (38%), Positives = 290/517 (56%), Gaps = 42/517 (8%)

Query: 115 VSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFAR 174
           V+ D ++   VLKAC        GL +HG   +    +DLF +N LIS Y R        
Sbjct: 6   VAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRI------- 58

Query: 175 QLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG 234
                                   G+  S R++FD      R+L+SWNS++ GY      
Sbjct: 59  ------------------------GDCRSGRKVFDHGV---RDLVSWNSMVAGYVGCGE- 90

Query: 235 LQFAWQIFEKMPERDLISWNSMLHGCVK-CGKMDDAQALFDKMPKRDVVSWANMIDGYAK 293
           +  A  +F++M +RD  SW +M+ G  +  G +D A+ LFD+MP RD+V W +MIDGYA+
Sbjct: 91  VDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYAR 150

Query: 294 LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLV 352
            GR+D AR LF+EMP+R+V++ + ++ GYVR G   +ALE F  M +C +   PD  + V
Sbjct: 151 HGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGI--KPDRVAAV 208

Query: 353 IVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG 412
             ++A AQLG +++G  +H YLEK +   +     ALIDMY KCG ++ A  +FE +   
Sbjct: 209 GAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKK 268

Query: 413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCF 472
           SV  WN MI GL  HG G  A  L  +ME      DD++   +L +C HAGLV EGL  F
Sbjct: 269 SVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSCTHAGLVSEGLGIF 328

Query: 473 ELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYEN 532
             M +   LEP+++HYG ++D+LGRAG ++ ARN IE MPMEP   +W +LL++CR++  
Sbjct: 329 YRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPELWGSLLASCRSHRC 388

Query: 533 LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           + + E   + L  + + +S  YVLLSN++A  GMW+D  R+R +M    +KK  G S IE
Sbjct: 389 VELAELSVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSAEGMKKNIGRSVIE 448

Query: 593 LEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVATS 629
           ++G +HEF     S     +IY  L   W   ++A S
Sbjct: 449 VDGQIHEFVNGGSSHPHKEEIYLTL---WNLSNIAAS 482



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 136/312 (43%), Gaps = 40/312 (12%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           W+ +I  Y    +P EAL  F  ML  G+  D+ +A   + AC++LG +E+G  +H  L 
Sbjct: 172 WSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLE 231

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           K     D+ +Q  LI +YV+CG L+ A+ +F+ M  +  V++N MI G    G    A +
Sbjct: 232 KKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIK 291

Query: 207 LFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKM 266
           LF+ M                               E+ P  DL S  ++L  C   G +
Sbjct: 292 LFNQMET-----------------------------ERAPMDDL-SILAVLTSCTHAGLV 321

Query: 267 DDAQALFDKMPKR-----DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
            +   +F +M K       V  +  +ID   + GRVD AR   + MP         + G 
Sbjct: 322 SEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPME---PTPELWGS 378

Query: 322 YVRNGYSMKALEIFD-NMQCELYLHPDDASLVIVLSAI-AQLGHIDKGVAIHRYLEKDQF 379
            + +  S + +E+ + +++    L  DD+ + ++LS I A  G  D    I + +  +  
Sbjct: 379 LLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSAEGM 438

Query: 380 SLNGKHGVALID 391
             N    V  +D
Sbjct: 439 KKNIGRSVIEVD 450


>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
 gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
          Length = 614

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 189/527 (35%), Positives = 291/527 (55%), Gaps = 45/527 (8%)

Query: 97  GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFL 156
           G  P++AL  F  M       D F+ S ++KA S  G +     +H  + K+    D F+
Sbjct: 111 GGAPRDALAAFSAMPRR----DSFTYSFLIKALSAAG-VAPVRAVHSHVVKLGSVEDTFV 165

Query: 157 QNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRER 216
            N LI                               D Y K+G    AR++FD MP  ER
Sbjct: 166 GNALI-------------------------------DAYSKNGGFSDARKVFDEMP--ER 192

Query: 217 NLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK 275
           +++SWN+ +   A ++ G L    ++F++MPE+D +SWN++L G  K G+++ A  LF +
Sbjct: 193 DVVSWNTAM--AAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQR 250

Query: 276 MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
           MP+R+VVSW+ M+ GY K G +++AR +FD+MP +++V    M+    + G   +A ++F
Sbjct: 251 MPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLF 310

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
             M+ E  +  D A++V +L+A A+ G +  G  IHRY+ K     +     ALIDM+ K
Sbjct: 311 AQMK-EASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCK 369

Query: 396 CGSIENAIKVF--EQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
           CG +  A  VF  E ++  SV  WN++I G A+HG G+ A +L  +M++    PD +T  
Sbjct: 370 CGCVNRADYVFDTETVQKDSVS-WNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMI 428

Query: 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPM 513
            +L+AC H G V EG   F  M R + + P+++HYGCM+D+LGR G I+ A +LI+ MP 
Sbjct: 429 NVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPW 488

Query: 514 EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV 573
           EPN+VIW +LLSACR ++N+   E     L  +  SN+ +Y +LSN++A  G W+D  + 
Sbjct: 489 EPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKA 548

Query: 574 RSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           R  MK    +K  G SW+EL    HEF V D+       I  M+D +
Sbjct: 549 RMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRL 595



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 130/477 (27%), Positives = 238/477 (49%), Gaps = 44/477 (9%)

Query: 45  NTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR--EKKDPFLWNAIIKTYSH-GLDPK 101
           +T   T+     S +PC+  T +         AF    ++D F ++ +IK  S  G+ P 
Sbjct: 88  STRSGTRTPTPSSPTPCSAPTRWGGAPRDALAAFSAMPRRDSFTYSFLIKALSAAGVAPV 147

Query: 102 EALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLI 161
            A+    + L  G   D F  + ++ A S+ G   +  ++   + +     D+   N  +
Sbjct: 148 RAVHSHVVKL--GSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPE----RDVVSWNTAM 201

Query: 162 SLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISW 221
           +  VR G L   R+LFD+M  +D+VS+N+++DGY K+G +E+A ELF  MP  ERN++SW
Sbjct: 202 AAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMP--ERNVVSW 259

Query: 222 NSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR-- 279
           +++++GY + K  L+ A  IF+KMP ++L++W  M+  C + G +D+A  LF +M +   
Sbjct: 260 STMVSGYCK-KGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASV 318

Query: 280 --DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV----ACNAMMGGYVRNGYSMKALE 333
             DV +  +++   A+ G + + +R+   + KR++      CNA++  + + G   +A  
Sbjct: 319 ELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADY 378

Query: 334 IFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMY 393
           +FD       +  D  S   ++   A  GH DK + +   +++  F+ +    V +I++ 
Sbjct: 379 VFDTET----VQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPD---AVTMINVL 431

Query: 394 SKC---GSIENAIKVFEQIEDG-----SVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
           S C   G ++   + F  +E        ++H+  MI+ L   GL + A DL+  M     
Sbjct: 432 SACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMP---W 488

Query: 446 EPDDITFTGLLNACA-HAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGH 500
           EP+++ +  LL+AC  H  +    +   EL     KL+P    +Y  + +I   AG 
Sbjct: 489 EPNEVIWGSLLSACRLHKNVEYAEIAVNEL----SKLQPSNAGNYAVLSNIYAEAGQ 541


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 211/677 (31%), Positives = 345/677 (50%), Gaps = 87/677 (12%)

Query: 20  LLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+ C  L +     +IH   +  G+ +   +   L+A +    C  L   AR +F    
Sbjct: 151 VLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGK--CGDLGG-ARVLFDGI- 206

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
              EK+D   WN+II  +    +  EAL +F  M + GV+ + ++    L+       ++
Sbjct: 207 -MMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVK 265

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G+ IHG + K    +D+++ N LI++Y +CG +E A ++F+ M  RD VS+N+++ G V
Sbjct: 266 LGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLV 325

Query: 197 -----------------------------------KSGNIESARELFDSMPIR---ERNL 218
                                              +SGN+   +E+  +  IR   + N+
Sbjct: 326 QNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEV-HAYAIRNGLDSNM 384

Query: 219 ISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK 278
              N++++ YA+    +++    FE M E+DLISW +++ G  +     +A  LF K+  
Sbjct: 385 QIGNTLVDMYAKC-CCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQV 443

Query: 279 R--------------------------------------DVVSWANMIDGYAKLGRVDIA 300
           +                                      D++    +++ Y ++G +D A
Sbjct: 444 KGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYA 503

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
           RR F+ +  +D+V+  +M+   V NG  ++ALE+F +++ +  + PD  +++  LSA A 
Sbjct: 504 RRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLK-QTNIQPDSIAIISALSATAN 562

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
           L  + KG  IH +L +  F L G    +L+DMY+ CG++EN+ K+F  ++   +  W +M
Sbjct: 563 LSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSM 622

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           IN   +HG G  A  L  +M   ++ PD ITF  LL AC+H+GL+ EG   FE+M+  ++
Sbjct: 623 INANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQ 682

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           LEP  +HY CMVD+L R+  +E A + + +MP++P+  IW  LL AC  + N  +GE  A
Sbjct: 683 LEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAA 742

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
           K L+  D+ NS  Y L+SN+FA  G WND   VR  MK   LKK PGCSWIE++  +H F
Sbjct: 743 KELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTF 802

Query: 601 FVRDKSRLQVRDIYYML 617
             RDKS  Q  DIY  L
Sbjct: 803 MARDKSHPQTDDIYLKL 819



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 161/628 (25%), Positives = 269/628 (42%), Gaps = 108/628 (17%)

Query: 10  PCNSTQSTLLLLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTE 66
           P     +  LLL  C   K L    Q+HA ++ +    +  L TKLV  +    C  L +
Sbjct: 42  PSRLEHAHSLLLDLCVAAKALPQGQQLHALLLKSHL--SAFLATKLVLMYGK--CGSLRD 97

Query: 67  FARYIFFKYHAFRE--KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL 124
             +        F E  ++  F WNA++  +       EA+ ++  M   GV++D  +   
Sbjct: 98  AVK-------VFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPS 150

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK--MGI 182
           VLKAC  LG    G +IHG+  K  +G  +F+ N LI++Y +CG L  AR LFD   M  
Sbjct: 151 VLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEK 210

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSMPI--RERNLISWNSVLNGYAQ---LKSGLQF 237
            D+VS+NS+I  +V  GN   A  LF  M       N  ++ + L G      +K G+  
Sbjct: 211 EDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGI 270

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
              + +     D+   N+++    KCG+M+DA  +F+ M  RD VSW             
Sbjct: 271 HGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSW------------- 317

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
                             N ++ G V+N     AL  F +MQ      PD  S++ +++A
Sbjct: 318 ------------------NTLLSGLVQNELYSDALNYFRDMQ-NSGQKPDQVSVLNLIAA 358

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
             + G++ KG  +H Y  ++    N + G  L+DMY+KC  ++     FE + +  +  W
Sbjct: 359 SGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISW 418

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
             +I G A +     A +L  +++   ++ D +    +L AC+       GL     +R 
Sbjct: 419 TTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACS-------GLKSRNFIRE 471

Query: 478 IHKLE-----PELQHYGCMVDILGRAGHIEAARNLIED--------------------MP 512
           IH         ++     +V++ G  GHI+ AR   E                     +P
Sbjct: 472 IHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLP 531

Query: 513 ME--------------PNDVIWRTLLSACRNYENLNVGEPVAKHLIG----MDSSNSSSY 554
           +E              P+ +   + LSA  N  +L  G+ +   LI     ++   +SS 
Sbjct: 532 VEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSL 591

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNL 582
           V   +M+A  G   ++R++   +K+R+L
Sbjct: 592 V---DMYACCGTVENSRKMFHSVKQRDL 616


>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
          Length = 1984

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 195/582 (33%), Positives = 319/582 (54%), Gaps = 50/582 (8%)

Query: 81  KKDPFL----WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
           +++PF     W A I  +       EAL +F  +L++GV  +  + + V++AC  LG   
Sbjct: 142 ERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFG 201

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G+ I GL+ K  F   L + N LI+L +R G ++ AR++FD+M  RD VS+ +++D YV
Sbjct: 202 LGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYV 261

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPE-------- 247
           ++G++  AR +FD MP  ERN ISW++++  Y+Q  SG  + A ++F KM +        
Sbjct: 262 ETGDLREARRIFDEMP--ERNEISWSAMIARYSQ--SGYAEEALKLFSKMVQEGFKPNIS 317

Query: 248 -------------------------------RDLISWNSMLHGCVKCGKMDDAQALFDKM 276
                                          +D+   +S++    KCGK DD + +FD +
Sbjct: 318 CFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLI 377

Query: 277 PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFD 336
            +++VV W +M+ GY+  GR++    LF+ +P+++ V+   ++ GY+ N    K LE+F+
Sbjct: 378 LEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFN 437

Query: 337 NMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC 396
            +       P+ ++   VL A A +  +DKG+ +H  + K     +   G AL DMY+KC
Sbjct: 438 TLLVSGQT-PNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKC 496

Query: 397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS-IEPDDITFTGL 455
           G I ++ +VFE++ + +   W  MI GLA  G    +  L  EMER S + P+++    +
Sbjct: 497 GDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSV 556

Query: 456 LNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEP 515
           L AC+H GLV +GL  F  M +++ ++P+ +HY C+VD+L R+G +  A   I  +P +P
Sbjct: 557 LFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQP 616

Query: 516 NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRS 575
               W  LLS C+ Y++  + E  AK L  +  +NS+ YVLLSN++A  G W D   +R 
Sbjct: 617 EANAWAALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRK 676

Query: 576 MMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           +M+E+ LKK  GCSW+E+   VH F+  D S  Q  +IY  L
Sbjct: 677 LMREKGLKKSGGCSWVEVRNQVHSFYSEDGSHSQSNEIYGTL 718



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 139/524 (26%), Positives = 246/524 (46%), Gaps = 115/524 (21%)

Query: 109 LMLDNGVSVDKFSASLV--LKACSRLGLIEEGLQIHGLLRKVAF---------------- 150
           L +D   S   ++ + V  LK  S  GLI +G  +H  L K  F                
Sbjct: 9   LAIDPKKSFRAYAQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLN 68

Query: 151 ---------------GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
                          GSDL + NC+IS YV+ G L  AR LFD+M  R+ VS++++I G 
Sbjct: 69  CRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGL 128

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF-AWQIFEKMPERDL---- 250
           +K G +E +   F+  P   +N++SW + ++G+  +++GL F A ++F ++ E  +    
Sbjct: 129 MKYGRVEESMWYFERNPF--QNVVSWTAAISGF--VRNGLNFEALKLFFRLLESGVRPND 184

Query: 251 ISWNSMLHGC-----------------------------------VKCGKMDDAQALFDK 275
           +++ S++  C                                   ++ G++D A+ +FD+
Sbjct: 185 VTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDR 244

Query: 276 MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
           M KRDVVSW  ++D Y + G +  ARR+FDEMP+R+ ++ +AM+  Y ++GY+ +AL++F
Sbjct: 245 MEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLF 304

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
             M  E +  P+ +     LSA+A L  +  G+ IH ++ K     +   G +LID+Y K
Sbjct: 305 SKMVQEGF-KPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCK 363

Query: 396 CGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG------------------------- 430
           CG  ++   VF+ I + +V  WN+M+ G +I+G                           
Sbjct: 364 CGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGY 423

Query: 431 ------ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
                 E   ++   +      P+  TF+ +L ACA    + +G+    +  +I KL  +
Sbjct: 424 LENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGM---NVHGKIIKLGIQ 480

Query: 485 LQHY--GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
              +    + D+  + G I +++ + E MP E N++ W  ++  
Sbjct: 481 YDIFVGTALTDMYAKCGDIGSSKQVFERMP-EKNEISWTVMIQG 523


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 195/569 (34%), Positives = 309/569 (54%), Gaps = 41/569 (7%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           KD F WN ++  Y+     ++A ++F    D+    D  S + +L    R G ++E   +
Sbjct: 93  KDLFSWNLMLTGYARNRRLRDARMLF----DSMPEKDVVSWNAMLSGYVRSGHVDEARDV 148

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
              +       +    N L++ YVR G LE AR+LF+     + +S N ++ GYVK   +
Sbjct: 149 FDRMPH----KNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNML 204

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
             AR+LFD +P+R+  LISWN++++GYAQ    L  A ++FE+ P RD+ +W +M++  V
Sbjct: 205 GDARQLFDQIPVRD--LISWNTMISGYAQ-DGDLSQARRLFEESPVRDVFTWTAMVYAYV 261

Query: 262 KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
           + G +D+A+ +FD+MP++  +S+  MI GYA+  R+D+ R LF+EMP  ++ + N M+ G
Sbjct: 262 QDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISG 321

Query: 322 YVRNGYSMKALEIFDNM----------------QCELY---------LHPDDASL----- 351
           Y +NG   +A  +FD M                Q  LY         +  D  SL     
Sbjct: 322 YCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTF 381

Query: 352 VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED 411
              LSA A +  ++ G  +H  + +  +      G AL+ MY KCG I+ A  VF+ ++ 
Sbjct: 382 CCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQH 441

Query: 412 GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC 471
             +  WN M+ G A HG G  A  +   M    ++PD+IT  G+L+AC+H GL   G   
Sbjct: 442 KDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEY 501

Query: 472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYE 531
           F  M + + + P  +HY CM+D+LGRAG +E A+NLI +MP EP+   W  LL A R + 
Sbjct: 502 FHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHG 561

Query: 532 NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           N+ +GE  A+ +  M+  NS  YVLLSN++A  G W D  ++R  M++  ++K PG SW+
Sbjct: 562 NMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWV 621

Query: 592 ELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           E++  +H F V D    +   IY  L+ +
Sbjct: 622 EVQNKIHTFTVGDCFHPEKGRIYAFLEEL 650



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/393 (30%), Positives = 207/393 (52%), Gaps = 36/393 (9%)

Query: 161 ISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLIS 220
           IS ++R G+ + A  +FD M +R+SVSYN+MI GY+++     AR+LFD MP   ++L S
Sbjct: 40  ISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMP--HKDLFS 97

Query: 221 WNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRD 280
           WN +L GYA+ +  L+ A  +F+ MPE+D++SWN+ML G V+ G +D+A+ +FD+MP ++
Sbjct: 98  WNLMLTGYARNRR-LRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKN 156

Query: 281 VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQC 340
            +SW  ++  Y + GR++ ARRLF+     ++++CN +MGGYV+      A ++FD +  
Sbjct: 157 SISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPV 216

Query: 341 ELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE----KDQFSLNGKHGVALIDMYSKC 396
                 D  S   ++S  AQ G + +     R  E    +D F+       A++  Y + 
Sbjct: 217 R-----DLISWNTMISGYAQDGDLSQA---RRLFEESPVRDVFTW-----TAMVYAYVQD 263

Query: 397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLL 456
           G ++ A +VF+++       +N MI G A +   ++  +L  EM   +I   +I  +G  
Sbjct: 264 GMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGY- 322

Query: 457 NACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA--GHIEAARNLIEDMPME 514
             C +  L +         R +  + P+         I G A  G  E A N++ +M  +
Sbjct: 323 --CQNGDLAQA--------RNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRD 372

Query: 515 PNDVIWRTL---LSACRNYENLNVGEPVAKHLI 544
              +   T    LSAC +   L +G+ V   ++
Sbjct: 373 GESLNRSTFCCALSACADIAALELGKQVHGQVV 405



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 168/346 (48%), Gaps = 54/346 (15%)

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244
           +V     I  ++++G+ + A  +FD+MP+  RN +S+N++++GY +  +    A  +F+K
Sbjct: 33  TVKCTKAISTHMRNGHCDLALCVFDAMPL--RNSVSYNAMISGYLR-NAKFSLARDLFDK 89

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
           MP +DL SWN ML G  +  ++ DA+ LFD MP++DVVSW  M+ GY + G VD AR +F
Sbjct: 90  MPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVF 149

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
           D MP ++ ++ N ++  YVR+G   +A  +F++          D  L+            
Sbjct: 150 DRMPHKNSISWNGLLAAYVRSGRLEEARRLFES--------KSDWELI------------ 189

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
                          S N      L+  Y K   + +A ++F+QI    +  WN MI+G 
Sbjct: 190 ---------------SCN-----CLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGY 229

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
           A  G    A  L  E    S   D  T+T ++ A    G++ E    F+ M +  ++   
Sbjct: 230 AQDGDLSQARRLFEE----SPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMS-- 283

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA-CRN 529
              Y  M+    +   ++  R L E+MP  PN   W  ++S  C+N
Sbjct: 284 ---YNVMIAGYAQYKRMDMGRELFEEMPF-PNIGSWNIMISGYCQN 325



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 15/176 (8%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR--EKKDPFLWNA 89
           Q+H +++ TG+ K   +   LV  +    C         I   Y  F+  + KD   WN 
Sbjct: 399 QVHGQVVRTGYEKGCLVGNALVGMYCKCGC---------IDEAYDVFQGVQHKDIVSWNT 449

Query: 90  IIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ-IHGLLRK 147
           ++  Y+ HG   ++AL +F  M+  GV  D+ +   VL ACS  GL + G +  H + + 
Sbjct: 450 MLAGYARHGFG-RQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKD 508

Query: 148 VAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMIDGYVKSGNIE 202
                +     C+I L  R G LE A+ L   M    D+ ++ +++      GN+E
Sbjct: 509 YGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNME 564


>gi|357447703|ref|XP_003594127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124365519|gb|ABN09753.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355483175|gb|AES64378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  338 bits (866), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 192/529 (36%), Positives = 298/529 (56%), Gaps = 43/529 (8%)

Query: 101 KEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCL 160
           +EAL +F  M   GV  +  +   V+ ACS LG +     +HGL+ K+     + +   L
Sbjct: 167 REALEVFKDMRSCGVVPNDLTLVNVISACSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNL 226

Query: 161 ISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLIS 220
           +  Y  C  +  AR+LFD+M  R+ V++N M++GY K+G ++ ARELFD   I ++++IS
Sbjct: 227 MHAYCLCSGVREARRLFDEMPERNLVTWNVMLNGYAKTGLVDEARELFDG--ICDKDVIS 284

Query: 221 WNSVLNGYAQ---LKSGLQF-------------------------------AWQIFEKMP 246
           W ++++GY Q   L+  L+                                 WQ+   + 
Sbjct: 285 WGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVNLVSACGRGTAIVDGWQLHGTVV 344

Query: 247 ERDLISWN----SMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
           +R    +N    ++++    CG MD A   F+   K  + SW  +  G+ K G +D A +
Sbjct: 345 KRGFDCYNFIQTTIIYFYAACGMMDLACLQFEVGVKDHLESWNALTAGFIKNGMMDHALK 404

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
            FD+M  RDV + + M+ GY ++ +   ALE+F  M     + P++ ++V V SAIA LG
Sbjct: 405 TFDKMHVRDVFSWSTMISGYAQSEHPKMALELFHKMLAG-GIKPNEVTMVSVFSAIATLG 463

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED--GSVDHWNAM 420
            + +G   H Y+  +    N     ALIDMY+KCGSI +A++ F QI D   SV  WNA+
Sbjct: 464 TLQEGKLAHEYMRSESIPFNDNLRAALIDMYAKCGSINSALQFFNQIRDEVSSVSPWNAI 523

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           I GLA HG   +  ++  +M+R  I+P+ ITF G+L+AC HAGLV+ G   F+ M+  + 
Sbjct: 524 ICGLASHGHASMCLEVFSDMQRFHIKPNPITFIGVLSACCHAGLVESGKRIFKTMKSAYN 583

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           +EP+++HYGCM+DILGRAG +E A  +I  MPME + VIW TLL+ACR + N+N+GE  A
Sbjct: 584 VEPDIKHYGCMIDILGRAGLLEEAEEMIRSMPMEADIVIWGTLLAACRTHGNVNIGERAA 643

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCS 589
           ++L  +  S+    VLLSN++A  G W +   VRS+M+ + + + PG S
Sbjct: 644 ENLARLAPSHGGGKVLLSNIYANAGKWEEVSFVRSVMQGQTMDREPGYS 692



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 135/463 (29%), Positives = 222/463 (47%), Gaps = 75/463 (16%)

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           LK+CS L  I +G QIH L+ K+    + F+QN LI++Y +CG ++ A+ LFD     DS
Sbjct: 60  LKSCSSLSFISQGRQIHSLIFKLGLHFNTFIQNSLINMYAKCGDIKNAQLLFDGFATLDS 119

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM 245
           VS N M+ GYV++G I++AR+LFD MP   +  +S+ +++ G+ Q     + A ++F+ M
Sbjct: 120 VSCNIMVSGYVRNGQIDNARKLFDVMP--NKGCVSYTTMIMGFVQ-NGFFREALEVFKDM 176

Query: 246 PE-----RDLISWN--------------SMLHGCVK--------------------CGKM 266
                   DL   N               M+HG V                     C  +
Sbjct: 177 RSCGVVPNDLTLVNVISACSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNLMHAYCLCSGV 236

Query: 267 DDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNG 326
            +A+ LFD+MP+R++V+W  M++GYAK G VD AR LFD +  +DV++   M+ GY++ G
Sbjct: 237 REARRLFDEMPERNLVTWNVMLNGYAKTGLVDEARELFDGICDKDVISWGTMIDGYIQKG 296

Query: 327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG 386
              +ALEI+  M  +    P++  +V ++SA  +   I  G  +H  + K  F       
Sbjct: 297 RLREALEIYRAM-LQTGHGPNEVMIVNLVSACGRGTAIVDGWQLHGTVVKRGFDCYNFIQ 355

Query: 387 VALIDMYSKCGSIENAIKVFEQ----------------IEDGSVDH-------------- 416
             +I  Y+ CG ++ A   FE                 I++G +DH              
Sbjct: 356 TTIIYFYAACGMMDLACLQFEVGVKDHLESWNALTAGFIKNGMMDHALKTFDKMHVRDVF 415

Query: 417 -WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            W+ MI+G A     ++A +L  +M    I+P+++T   + +A A  G ++EG L  E M
Sbjct: 416 SWSTMISGYAQSEHPKMALELFHKMLAGGIKPNEVTMVSVFSAIATLGTLQEGKLAHEYM 475

Query: 476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
           R    +         ++D+  + G I +A      +  E + V
Sbjct: 476 RS-ESIPFNDNLRAALIDMYAKCGSINSALQFFNQIRDEVSSV 517



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 194/379 (51%), Gaps = 29/379 (7%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           KD   W  +I  Y      +EAL ++  ML  G   ++     ++ AC R   I +G Q+
Sbjct: 280 KDVISWGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVNLVSACGRGTAIVDGWQL 339

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSV-SYNSMIDGYVKSGN 200
           HG + K  F    F+Q  +I  Y  CG ++ A   F+ +G++D + S+N++  G++K+G 
Sbjct: 340 HGTVVKRGFDCYNFIQTTIIYFYAACGMMDLACLQFE-VGVKDHLESWNALTAGFIKNGM 398

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM-------PERDLISW 253
           ++ A + FD M +R+  + SW+++++GYAQ +   + A ++F KM        E  ++S 
Sbjct: 399 MDHALKTFDKMHVRD--VFSWSTMISGYAQSEHP-KMALELFHKMLAGGIKPNEVTMVSV 455

Query: 254 NSMLH--GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
            S +   G ++ GK+       + +P  D +  A +ID YAK G ++ A + F+++  RD
Sbjct: 456 FSAIATLGTLQEGKLAHEYMRSESIPFNDNLR-AALIDMYAKCGSINSALQFFNQI--RD 512

Query: 312 VVAC----NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
            V+     NA++ G   +G++   LE+F +MQ   ++ P+  + + VLSA    G ++ G
Sbjct: 513 EVSSVSPWNAIICGLASHGHASMCLEVFSDMQ-RFHIKPNPITFIGVLSACCHAGLVESG 571

Query: 368 VAIHRYLEKDQFSLNG--KHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGL 424
             I + + K  +++    KH   +ID+  + G +E A ++   +  +  +  W  ++   
Sbjct: 572 KRIFKTM-KSAYNVEPDIKHYGCMIDILGRAGLLEEAEEMIRSMPMEADIVIWGTLLAAC 630

Query: 425 AIHG---LGELAFDLLMEM 440
             HG   +GE A + L  +
Sbjct: 631 RTHGNVNIGERAAENLARL 649



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 130/285 (45%), Gaps = 38/285 (13%)

Query: 38  ITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHG 97
           +T GFIKN                  + + A   F K H     +D F W+ +I  Y+  
Sbjct: 389 LTAGFIKNG-----------------MMDHALKTFDKMHV----RDVFSWSTMISGYAQS 427

Query: 98  LDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQ 157
             PK AL +F  ML  G+  ++ +   V  A + LG ++EG   H  +R  +   +  L+
Sbjct: 428 EHPKMALELFHKMLAGGIKPNEVTMVSVFSAIATLGTLQEGKLAHEYMRSESIPFNDNLR 487

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVS----YNSMIDGYVKSGNIESARELFDSMPI 213
             LI +Y +CG +  A Q F++  IRD VS    +N++I G    G+     E+F  M  
Sbjct: 488 AALIDMYAKCGSINSALQFFNQ--IRDEVSSVSPWNAIICGLASHGHASMCLEVFSDMQR 545

Query: 214 R--ERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMP-----ERDLISWNSMLHGCVKCGK 265
              + N I++  VL+  A   +GL +   +IF+ M      E D+  +  M+    + G 
Sbjct: 546 FHIKPNPITFIGVLS--ACCHAGLVESGKRIFKTMKSAYNVEPDIKHYGCMIDILGRAGL 603

Query: 266 MDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
           +++A+ +   MP + D+V W  ++      G V+I  R  + + +
Sbjct: 604 LEEAEEMIRSMPMEADIVIWGTLLAACRTHGNVNIGERAAENLAR 648



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 96/231 (41%), Gaps = 43/231 (18%)

Query: 332 LEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALID 391
           + IF N +     H  + +LV  L + + L  I +G  IH  + K     N     +LI+
Sbjct: 37  IHIFTNARNHQNHHDSELALVSALKSCSSLSFISQGRQIHSLIFKLGLHFNTFIQNSLIN 96

Query: 392 MYSKCGSIENAIKVFEQ----------------IEDGSVDH---------------WNAM 420
           MY+KCG I+NA  +F+                 + +G +D+               +  M
Sbjct: 97  MYAKCGDIKNAQLLFDGFATLDSVSCNIMVSGYVRNGQIDNARKLFDVMPNKGCVSYTTM 156

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLV-----KEGLLCFELM 475
           I G   +G    A ++  +M    + P+D+T   +++AC+H G V       GL+    +
Sbjct: 157 IMGFVQNGFFREALEVFKDMRSCGVVPNDLTLVNVISACSHLGEVLNCRMVHGLVVKMFV 216

Query: 476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
             +  +   L H  C+         +  AR L ++MP E N V W  +L+ 
Sbjct: 217 VGLVIVSTNLMHAYCLCS------GVREARRLFDEMP-ERNLVTWNVMLNG 260


>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 207/656 (31%), Positives = 327/656 (49%), Gaps = 131/656 (19%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ------ 140
           WN +I  Y H    +EA  +F +M +     D FS +L++   +R G +E+  +      
Sbjct: 82  WNTMIAGYLHNNMVEEASELFDVMPER----DNFSWALMITCYTRKGKLEKARELLELVP 137

Query: 141 -----------IHGLLRKVAF-----------GSDLFLQNCLISLYVRCGYLEFARQLFD 178
                      I G  +K  F             DL   N +++ Y + G +  A Q F+
Sbjct: 138 DKLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFE 197

Query: 179 KMGIRDSVSYNSMIDGYVKSGNIESA-------------------------------REL 207
            M  R+ VS+N M+ GYVKSG++ SA                               REL
Sbjct: 198 SMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAKYGKMAEAREL 257

Query: 208 FDSMPIRERNLISWNSVLNGYAQLKSGLQF--AWQIFEKMPERDLISWNSMLHGCVKCGK 265
           FD MP   +N++SWN+++  Y Q    LQ   A ++F+KMP +D +SW ++++G ++ GK
Sbjct: 258 FDRMP--SKNVVSWNAMIATYVQ---DLQVDEAVKLFKKMPHKDSVSWTTIINGYIRVGK 312

Query: 266 MDDAQALFDKMP-------------------------------KRDVVSWANMIDGYAKL 294
           +D+A+ ++++MP                                 DVV W +MI GY++ 
Sbjct: 313 LDEARQVYNQMPCKDITAQTALMSGLIQNGRIDEADQMFSRIGAHDVVCWNSMIAGYSRS 372

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM---------------- 338
           GR+D A  LF +MP ++ V+ N M+ GY + G   +A EIF  M                
Sbjct: 373 GRMDEALNLFRQMPIKNSVSWNTMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFL 432

Query: 339 QCELYL--------------HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK 384
           Q  LYL               PD ++    LSA A L  +  G  +H Y+ K  +  +  
Sbjct: 433 QNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACANLAALQVGNQLHEYILKSGYMNDLF 492

Query: 385 HGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS 444
            G ALI MY+KCG +++A +VF  IE   +  WN++I+G A++G    AF    +M    
Sbjct: 493 VGNALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLISGYALNGYANKAFKAFEQMSSER 552

Query: 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504
           + PD++TF G+L+AC+HAGL  +GL  F+ M     +EP  +HY C+VD+LGR G +E A
Sbjct: 553 VVPDEVTFIGMLSACSHAGLANQGLDIFKCMIEDFAIEPLAEHYSCLVDLLGRVGRLEEA 612

Query: 505 RNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL 564
            N +  M ++ N  +W +LL ACR ++NL +G   A+ L  ++  N+S+Y+ LSNM A  
Sbjct: 613 FNTVRGMKVKANAGLWGSLLGACRVHKNLELGRFAAERLFELEPHNASNYITLSNMHAEA 672

Query: 565 GMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           G W +  RVR +M+ +   K PGCSWIE++  +  F   D ++L+ ++I  +L+ +
Sbjct: 673 GRWEEVERVRMLMRGKRAGKQPGCSWIEVQNQIQHFLSHDPAKLRPKNIQIILNTL 728



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 144/575 (25%), Positives = 260/575 (45%), Gaps = 103/575 (17%)

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
           +LG +EE ++I   +       +L   N +IS+  +   +  ARQLFD+M +R+ VS+N+
Sbjct: 29  KLGKVEEAIRIFFNMTH----KNLVTYNSMISVLAKNARIRDARQLFDQMSLRNLVSWNT 84

Query: 191 MIDGYVKSGNIESARELFDSMPIRE--------------------RNLIS---------- 220
           MI GY+ +  +E A ELFD MP R+                    R L+           
Sbjct: 85  MIAGYLHNNMVEEASELFDVMPERDNFSWALMITCYTRKGKLEKARELLELVPDKLDTAC 144

Query: 221 WNSVLNGYAQ-----------------------------LKSG-LQFAWQIFEKMPERDL 250
           WN+++ GYA+                              ++G +  A Q FE M ER++
Sbjct: 145 WNAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNV 204

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
           +SWN M+ G VK G +  A  LF+K+P  + VSW  M+ G AK G++  AR LFD MP +
Sbjct: 205 VSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAKYGKMAEARELFDRMPSK 264

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
           +VV+ NAM+  YV++    +A+++F  M      H D  S   +++   ++G +D+   +
Sbjct: 265 NVVSWNAMIATYVQDLQVDEAVKLFKKMP-----HKDSVSWTTIINGYIRVGKLDEARQV 319

Query: 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
           +  +     +       AL+    + G I+ A ++F +I    V  WN+MI G +  G  
Sbjct: 320 YNQMPCKDITAQ----TALMSGLIQNGRIDEADQMFSRIGAHDVVCWNSMIAGYSRSGRM 375

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
           + A +L  +M       + +++  +++  A AG +      F+ MR     E  +  +  
Sbjct: 376 DEALNLFRQMPI----KNSVSWNTMISGYAQAGQMDRATEIFQAMR-----EKNIVSWNS 426

Query: 491 MV-DILGRAGHIEAARNLI--EDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
           ++   L    +++A ++L+       +P+   +   LSAC N   L VG  + ++++   
Sbjct: 427 LIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACANLAALQVGNQLHEYIL--- 483

Query: 548 SSNSSSYVLLSNMFAG---LGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
               S Y  ++++F G   + M+    RV+S   E+  + +     I    ++  + +  
Sbjct: 484 ---KSGY--MNDLFVGNALIAMYAKCGRVQS--AEQVFRDIECVDLISWNSLISGYALNG 536

Query: 605 KSRLQVRDIYYMLDNMWTPDSVA-----TSCTHYG 634
            +    +    M      PD V      ++C+H G
Sbjct: 537 YANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAG 571



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 135/516 (26%), Positives = 242/516 (46%), Gaps = 78/516 (15%)

Query: 19  LLLRKCKTLNDVNQIHARMITTGFIKNTHLTT------KLVASFSSSPCTPLTEFARYIF 72
           L L+  +++ + N +   ++  G++K+  L++      K+    + S  T L   A+Y  
Sbjct: 191 LALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAKY-- 248

Query: 73  FKYHAFRE------KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVL 126
            K    RE       K+   WNA+I TY   L   EA+ +F  M       D  S + ++
Sbjct: 249 GKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMPHK----DSVSWTTII 304

Query: 127 KACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSV 186
               R+G ++E  Q++  +       D+  Q  L+S  ++ G ++ A Q+F ++G  D V
Sbjct: 305 NGYIRVGKLDEARQVYNQMP----CKDITAQTALMSGLIQNGRIDEADQMFSRIGAHDVV 360

Query: 187 SYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP 246
            +NSMI GY +SG ++ A  LF  MPI  +N +SWN++++GYAQ    +  A +IF+ M 
Sbjct: 361 CWNSMIAGYSRSGRMDEALNLFRQMPI--KNSVSWNTMISGYAQ-AGQMDRATEIFQAMR 417

Query: 247 ERDLISWNSMLHG-----------------------------------CVKCGKMDDAQA 271
           E++++SWNS++ G                                   C     +     
Sbjct: 418 EKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACANLAALQVGNQ 477

Query: 272 LFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGY 327
           L + + K     D+     +I  YAK GRV  A ++F ++   D+++ N+++ GY  NGY
Sbjct: 478 LHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLISGYALNGY 537

Query: 328 SMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN--GKH 385
           + KA + F+ M  E  + PD+ + + +LSA +  G  ++G+ I + + +D F++    +H
Sbjct: 538 ANKAFKAFEQMSSERVV-PDEVTFIGMLSACSHAGLANQGLDIFKCMIED-FAIEPLAEH 595

Query: 386 GVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHG---LGELAFDLLMEME 441
              L+D+  + G +E A      ++   +   W +++    +H    LG  A + L E  
Sbjct: 596 YSCLVDLLGRVGRLEEAFNTVRGMKVKANAGLWGSLLGACRVHKNLELGRFAAERLFE-- 653

Query: 442 RLSIEPDDIT-FTGLLNACAHAGLVKEGLLCFELMR 476
              +EP + + +  L N  A AG  +E      LMR
Sbjct: 654 ---LEPHNASNYITLSNMHAEAGRWEEVERVRMLMR 686


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 188/545 (34%), Positives = 301/545 (55%), Gaps = 5/545 (0%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   WN +I   S     +EAL +   M   GV +D  + +  L AC+RL  +  G Q
Sbjct: 232 ERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQ 291

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  + +     D ++ + LI LY +CG  + A+++F+ +  R+SVS+  +I G ++   
Sbjct: 292 LHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYEC 351

Query: 201 IESARELFDSM-----PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
              + ELF+ M      I +  L +  S       L  G Q      +    R ++  NS
Sbjct: 352 FSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNS 411

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           ++    KCG + +A+ +F  M +RD+VSW +MI  Y+++G +  AR  FD M  R+ +  
Sbjct: 412 LISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITW 471

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           NAM+G Y+++G     L+++  M  +  + PD  + V +    A +G    G  I  +  
Sbjct: 472 NAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTV 531

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           K    LN     A I MYSKCG I  A K+F+ +    V  WNAMI G + HG+G+ A  
Sbjct: 532 KAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAK 591

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
              +M     +PD I++  +L+ C+H+GLV+EG L F++M R+H + P L+H+ CMVD+L
Sbjct: 592 TFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLL 651

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           GRAGH+  A++LI+ MPM+P   +W  LLSAC+ + N  + E  AKH+  +DS +S SY+
Sbjct: 652 GRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYM 711

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY 615
           LL+ +++  G  +D+ +VR +M+++ +KK PG SW+E+E  VH F   D S  QV  I  
Sbjct: 712 LLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRN 771

Query: 616 MLDNM 620
            LD +
Sbjct: 772 KLDEL 776



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 126/513 (24%), Positives = 227/513 (44%), Gaps = 47/513 (9%)

Query: 14  TQSTLLLLRKCKT---LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY 70
           TQ+    LR C +   L     +H R++T G      L   L+ ++ S  C  L++  R 
Sbjct: 4   TQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFS--CGALSDARRL 61

Query: 71  I------------------FFKYHAFRE---------KKDPFLWNAIIKTYSHGLDPKEA 103
           +                  + K  +  +         ++D   WN ++  Y       + 
Sbjct: 62  LRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDG 121

Query: 104 LVMFCLMLDNGVSV-DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLIS 162
           L  F  M  +G S+ + F+   V+K+C  LG  E   Q+ GL  K  F  D  ++  L+ 
Sbjct: 122 LETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVD 181

Query: 163 LYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWN 222
           ++VRCGY++FA +LF ++        NSM+ GY K   I+ A E F+ M   ER+++SWN
Sbjct: 182 MFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMA--ERDVVSWN 239

Query: 223 SVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK---- 275
            ++   +Q   ++  L    ++  K    D  ++ S L  C +   +   + L  K    
Sbjct: 240 MMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRS 299

Query: 276 MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
           +P+ D    + +I+ YAK G    A+R+F+ +  R+ V+   ++GG ++     K++E+F
Sbjct: 300 LPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELF 359

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
           + M+ EL +  D  +L  ++S       +  G  +H    K   +       +LI +Y+K
Sbjct: 360 NQMRAEL-MAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAK 418

Query: 396 CGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGL 455
           CG ++NA  VF  + +  +  W +MI   +  G    A +    M+      + IT+  +
Sbjct: 419 CGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMD----TRNAITWNAM 474

Query: 456 LNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
           L A    G  ++GL  +  M     + P+   Y
Sbjct: 475 LGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTY 507



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 98/439 (22%), Positives = 160/439 (36%), Gaps = 130/439 (29%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
            L++C   G +     +HG L  V   S +FLQN L+                       
Sbjct: 10  ALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLH---------------------- 47

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244
                     Y   G +  AR L  +  I+E N+I+ N ++N                  
Sbjct: 48  ---------AYFSCGALSDARRLLRA-DIKEPNVITHNIMMN------------------ 79

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
                         G  K G + DA+ LFD+MP+RDV SW  ++ GY +      ARR  
Sbjct: 80  --------------GYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQ------ARRFL 119

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
           D                          LE F +M       P+  +   V+ +   LG  
Sbjct: 120 D-------------------------GLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCR 154

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS----------- 413
           +    +     K  F  +     AL+DM+ +CG ++ A ++F QIE  +           
Sbjct: 155 ELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGY 214

Query: 414 -----VDH---------------WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
                +DH               WN MI  L+  G    A  L++EM R  +  D  T+T
Sbjct: 215 AKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYT 274

Query: 454 GLLNACAHAGLVKEG-LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP 512
             L ACA    +  G  L  +++R + +++P +     ++++  + G  + A+ +   + 
Sbjct: 275 SSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA--SALIELYAKCGSFKEAKRVFNSL- 331

Query: 513 MEPNDVIWRTLLSACRNYE 531
            + N V W  L+     YE
Sbjct: 332 QDRNSVSWTVLIGGSLQYE 350


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 182/503 (36%), Positives = 291/503 (57%), Gaps = 13/503 (2%)

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGY---LEFARQLFDKMGIRDSVSYNSMIDGYV 196
           Q H  + ++   S   L   LI+   R      L +A +LFD +   D+  YN++I G++
Sbjct: 40  QYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAFLYNTIIKGFL 99

Query: 197 KSGNIESARELFDSMPIRERNLISWN----SVLNGYAQLKSGLQFAWQIFEKMPERDLIS 252
            S  + +   L     + + +++  N    S+L    +++ G+Q    +F+       + 
Sbjct: 100 HSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKIQHGMQIHAHLFKFGFGAHSVC 159

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
            NS++H  V    +++A+ +F  +P  D VSW ++I GY+K G +D A  +F  MP+++ 
Sbjct: 160 LNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNS 219

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
            + NAMM  YV+     +A  +FD M+ E     D      +LSA   LG +D+G  IH 
Sbjct: 220 ASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGALDQGKWIHE 279

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS--VDHWNAMINGLAIHGLG 430
           Y++++   L+ K   A++DMY KCG +E A++VF  +      +  WN MI GLA+HG G
Sbjct: 280 YIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNG 339

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
           E A  L  EMER  + PDDITF  LL ACAH+GLV+EG   F  M R++ +EP ++H+GC
Sbjct: 340 EAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGC 399

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           MVD+LGRAG +  AR LI++MP+ P+  +  TLL AC+ + N+ +GE + + +I ++ +N
Sbjct: 400 MVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACKKHRNIELGEEIGRRVIELEPNN 459

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQV 610
           S  YVLL+N++A  G W DA +VR +M +R +KK PG S IEL+G VHEF   +++  Q 
Sbjct: 460 SGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIELQGTVHEFIAGERNHPQA 519

Query: 611 RD----IYYMLDNMWTPDSVATS 629
           ++    +Y ML+++ +   VA +
Sbjct: 520 KELHAKVYEMLEHLKSVGYVADT 542



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 136/507 (26%), Positives = 236/507 (46%), Gaps = 64/507 (12%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
             KC++++ + Q H+++I  G   + HL   L+   + +  +    +A  +F        
Sbjct: 29  FEKCQSMSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSI----P 84

Query: 81  KKDPFLWNAIIKTYSHG--LDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
           + D FL+N IIK + H   L     L+++  ML N V  + F+   +L AC +   I+ G
Sbjct: 85  QPDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRK---IQHG 141

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
           +QIH  L K  FG+     N LI +YV    LE AR++F  +   DSVS+ S+I GY K 
Sbjct: 142 MQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKW 201

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER-----DLISW 253
           G I+ A  +F  MP  ++N  SWN+++  Y Q  +    A+ +F++M        D    
Sbjct: 202 GLIDEAFTIFQLMP--QKNSASWNAMMAAYVQ-TNRFHEAFALFDRMKAENNNVLDKFVA 258

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
            +ML  C   G +D  + + + + +     D      ++D Y K G ++ A ++F  +P 
Sbjct: 259 TTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPL 318

Query: 310 --RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
             R + + N M+GG   +G    A+++F  M+ +  + PDD + + +L+A A  G +++G
Sbjct: 319 PCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQ-RVAPDDITFLNLLTACAHSGLVEEG 377

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
                   ++ FS        +I +Y                 +  ++H+  M++ L   
Sbjct: 378 --------RNYFSY-------MIRVYGI---------------EPRMEHFGCMVDLLGRA 407

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ- 486
           G+   A  L+ EM    + PD      LL AC     ++ G    E+ RR+ +LEP    
Sbjct: 408 GMVPEARKLIDEM---PVSPDVTVLGTLLGACKKHRNIELGE---EIGRRVIELEPNNSG 461

Query: 487 HYGCMVDILGRAGHIEAA---RNLIED 510
            Y  + ++   AG  E A   R L++D
Sbjct: 462 RYVLLANLYANAGKWEDAAKVRKLMDD 488


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 178/467 (38%), Positives = 270/467 (57%), Gaps = 7/467 (1%)

Query: 158 NCLISLYVRCG---YLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR 214
           NCL++ Y +      L  AR+LFD +   D+VSYN+++  +   G+I+ AR +F +MP++
Sbjct: 47  NCLLAGYAKASGLIRLADARRLFDSIPHPDTVSYNTLLSCHFACGDIDGARRVFSTMPVK 106

Query: 215 ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFD 274
           +  + SWN++++G ++     + A  +F  MP R+ +SWN+M+      G M  A+ LF 
Sbjct: 107 D--VTSWNTMVSGLSK-NGASEEAAAMFRIMPVRNAVSWNAMVAALACSGDMGAAEDLFR 163

Query: 275 KMP-KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE 333
             P K D + W  M+ GY   G V  A   F  MP R++V+ NA++ GYV+N  +  AL 
Sbjct: 164 NAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALR 223

Query: 334 IFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMY 393
           +F  M  +  + P+ ++L  VL   + L  +  G  +H++  K   S N   G +L+ MY
Sbjct: 224 VFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMY 283

Query: 394 SKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
            KCG + +A KVF+++    +  WNAMI+G A HG G  A  L  +M+   + PD IT  
Sbjct: 284 CKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLL 343

Query: 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPM 513
            +L AC H GL   G+ CFE M+  +K+EP++ HY CMVD+L RAG +E A N+I  MP 
Sbjct: 344 AVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSMPF 403

Query: 514 EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV 573
           EP+   + TLL+ACR Y+NL   E  A+ LI  D  N+ +YV L+N++A    W D  RV
Sbjct: 404 EPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANKWADVSRV 463

Query: 574 RSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           R  MK+  + K PG SW+E++GV HEF   D+   Q+  I+  LD +
Sbjct: 464 RRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLGLIHDKLDRL 510



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 99/199 (49%), Gaps = 9/199 (4%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLML-DNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
           WNA++  Y       +AL +F  M+ D+ V  +  + S VL  CS L  +  G Q+H   
Sbjct: 205 WNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWC 264

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
            K+    ++ +   L+S+Y +CG L  A ++FD+M  +D V++N+MI GY + G    A 
Sbjct: 265 MKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAI 324

Query: 206 ELFDSMPIRERNLISWNSVLNGY-AQLKSGL-QFAWQIFEKMPERDLIS-----WNSMLH 258
           +LF+ M   E  +  W ++L    A + +GL  F  Q FE M E   I      ++ M+ 
Sbjct: 325 KLFEKMK-DEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVD 383

Query: 259 GCVKCGKMDDAQALFDKMP 277
              + G ++ A  +   MP
Sbjct: 384 LLCRAGLLERAVNMIHSMP 402


>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
          Length = 549

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 204/592 (34%), Positives = 330/592 (55%), Gaps = 76/592 (12%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           +HA++I  G    T    KL+ SF +       ++A+ +F +      + + F++N++I+
Sbjct: 7   LHAQIILHGLTNETLTLGKLI-SFCAVDDAGDLQYAQRMFDQI----PQPNKFMYNSLIR 61

Query: 93  TYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGS 152
            YS+  DP +A+++F  M+ +G+S ++F+   VLKAC       E + +HGL  K+  GS
Sbjct: 62  GYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGS 121

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
            +F+QN LI++                               YV  G I  AR+LFD   
Sbjct: 122 LVFVQNALIAV-------------------------------YVVCGLIHCARKLFDD-- 148

Query: 213 IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
           I ++ LI                             D+I  N+++    KCG +  AQA+
Sbjct: 149 ITDKTLI-----------------------------DIIVRNALVDMYAKCGNLHSAQAI 179

Query: 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
           FD+  +++VVSW +MI  YA+ G +++AR++FD+MP ++VV+ N+M+  Y+R G   +AL
Sbjct: 180 FDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREAL 239

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV----A 388
           ++F+ M+    + PD+A+LV +L+A +QLG +  G  IH Y+     S  G +GV    +
Sbjct: 240 DLFNKMRNSRVV-PDEATLVSILAACSQLGDLVMGKKIHNYI----LSNKGAYGVTLYNS 294

Query: 389 LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD 448
           LIDMY+KCG +  A+ +F ++   ++  WN +I  LA+HG G  A  L  EM+     PD
Sbjct: 295 LIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPD 354

Query: 449 DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLI 508
           +IT TGLL+AC+H+GLV  GL  F+ M  I+++  E++HY CMVD+LGR G +  A  LI
Sbjct: 355 EITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELI 414

Query: 509 EDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWN 568
             MPM+P+ V+W  LL ACR + N+ +G+ + K L+ ++  +   YVL+SN++     W 
Sbjct: 415 GRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWE 474

Query: 569 DARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           D +++R +M +R +KK    S IE++G ++EF V DK       IY MLD +
Sbjct: 475 DVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISSSIYAMLDQL 526


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 214/691 (30%), Positives = 354/691 (51%), Gaps = 93/691 (13%)

Query: 19  LLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAF 78
           +LL  C ++ +++QI   +I  G        TKLV+ FS      + E AR     +   
Sbjct: 54  VLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKY--GSINEAARV----FEPI 107

Query: 79  REKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
            +K D  L++ ++K Y+     + AL   C M  + V    ++ + +LK C     ++ G
Sbjct: 108 DDKLDA-LYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRG 166

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
            +IHG L   +F +++F    ++++Y +C  ++ A ++FD+M  RD VS+N++I G+ ++
Sbjct: 167 KEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQN 226

Query: 199 GNIESARELF----------DSMPI-------RERNLISWNSVLNGYAQLKSG------- 234
           G  + A EL           DS+ +        +  L+     ++GYA +++G       
Sbjct: 227 GFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYA-IRAGFAKLVNI 285

Query: 235 -------------LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR-- 279
                        ++ A  IF+ M ++ ++SWNSM+ G V+ G+ + A A+F+KM +   
Sbjct: 286 STALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGI 345

Query: 280 -------------------------------------DVVSWANMIDGYAKLGRVDIARR 302
                                                D+    ++I  Y+K  RVDIA  
Sbjct: 346 DPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASD 405

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           +F+ +  R  V+ NAM+ GY +NG   +AL  F  M+  L + PD  ++V V+ A+A+L 
Sbjct: 406 IFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMK-SLGMKPDSFTMVSVIPALAELS 464

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
                  IH  + +     N     AL+DMYSKCG+I  A K+F+ I D  V  WNAMI+
Sbjct: 465 VTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMID 524

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
           G   HGLG  A DL  +M++ ++EP+DIT+  +++AC+H+GLV EGL  F+ M++ + LE
Sbjct: 525 GYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLE 584

Query: 483 PELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKH 542
           P + HYG MVD+LGRAG I+ A + IE+MP+ P   ++     AC+ ++N+ VGE  AK 
Sbjct: 585 PSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKK 644

Query: 543 LIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
           L  ++      +VLL+N++A    W+    VR  M+++ LKK PGCS +EL   VH F+ 
Sbjct: 645 LFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYS 704

Query: 603 RDKSRLQVRDIYYMLDNM--------WTPDS 625
              +  Q + IY  L+ +        + PD+
Sbjct: 705 GSTTHPQSKRIYAFLEELVYEIKAAGYVPDT 735



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 195/400 (48%), Gaps = 41/400 (10%)

Query: 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQL 176
           V K  A+++L+ C+ +   +E  QI  L+ K    ++   Q  L+SL+ + G +  A ++
Sbjct: 47  VYKHPAAVLLELCTSM---KELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARV 103

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESA-----RELFDSMPIRERNLISWNSVLNGYAQL 231
           F+ +  +    Y++M+ GY K+ ++E+A     R  +D +     N      V    A L
Sbjct: 104 FEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADL 163

Query: 232 KSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGY 291
           K G +   Q+            NS                        +V +   +++ Y
Sbjct: 164 KRGKEIHGQLIT----------NSF---------------------AANVFAMTGVVNMY 192

Query: 292 AKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASL 351
           AK  ++D A ++FD MP+RD+V+ N ++ G+ +NG++ KALE+   MQ E    PD  +L
Sbjct: 193 AKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQ-RPDSITL 251

Query: 352 VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED 411
           V VL A A +G +  G +IH Y  +  F+       AL DMYSKCGS+E A  +F+ ++ 
Sbjct: 252 VTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQ 311

Query: 412 GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC 471
            +V  WN+M++G   +G  E A  +  +M    I+P  +T    L+ACA  G ++ G   
Sbjct: 312 KTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFV 371

Query: 472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM 511
            + + +++ L  ++     ++ +  +   ++ A ++  ++
Sbjct: 372 HKFVDQLN-LGSDISVMNSLISMYSKCKRVDIASDIFNNL 410


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 199/600 (33%), Positives = 336/600 (56%), Gaps = 23/600 (3%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           QIH  ++  G+ K+  +   LV  ++   C  L + AR +F +      +++   W ++I
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAE--CGEL-DSARKVFDEM----SERNVVSWTSMI 207

Query: 92  KTYSHGLDPKEALVMFCLML-DNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAF 150
             Y+     K+A+ +F  M+ D  V+ +  +   V+ AC++L  +E G +++  +R    
Sbjct: 208 CGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGI 267

Query: 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDS 210
             +  + + L+ +Y++C  ++ A++LFD+ G  +    N+M   YV+ G    A  +F+ 
Sbjct: 268 EVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNL 327

Query: 211 M------PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISW----NSMLHGC 260
           M      P R    IS  S ++  +QL++ L +       +      SW    N+++   
Sbjct: 328 MMDSGVRPDR----ISMLSAISSCSQLRNIL-WGKSCHGYVLRNGFESWDNICNALIDMY 382

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
           +KC + D A  +FD+M  + VV+W +++ GY + G VD A   F+ MP++++V+ N ++ 
Sbjct: 383 MKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIIS 442

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           G V+     +A+E+F +MQ +  ++ D  +++ + SA   LG +D    I+ Y+EK+   
Sbjct: 443 GLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQ 502

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
           L+ + G  L+DM+S+CG  E+A+ +F  + +  V  W A I  +A+ G  E A +L  +M
Sbjct: 503 LDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDM 562

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500
               ++PD + F G L AC+H GLV++G   F  M ++H + PE  HYGCMVD+LGRAG 
Sbjct: 563 IEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGL 622

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560
           +E A  LIEDMPMEPNDVIW +LL+ACR   N+ +    A+ +  +    + SYVLLSN+
Sbjct: 623 LEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNV 682

Query: 561 FAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +A  G WND  +VR  MKE+ L+K PG S I++ G  HEF   D+S  ++ +I  MLD +
Sbjct: 683 YASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEV 742



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 139/534 (26%), Positives = 256/534 (47%), Gaps = 70/534 (13%)

Query: 14  TQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFF 73
           T++T   L+ CKT++++   H  +   G   +    TKLVA            FA+ +F 
Sbjct: 32  TKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFE 91

Query: 74  KYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLG 133
              ++      F++N++I+ Y+      EA+++F  M+++G+S DK++    L AC++  
Sbjct: 92  NSESY---GTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSR 148

Query: 134 LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMID 193
               G+QIHGL+ K+ +  DLF+QN L+  Y  CG L+ AR++FD+M  R+ VS+ SMI 
Sbjct: 149 AKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMIC 208

Query: 194 GYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISW 253
           GY +    + A +LF  M +R+   ++ NSV                           + 
Sbjct: 209 GYARRDFAKDAVDLFFRM-VRDEE-VTPNSV---------------------------TM 239

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDV----VSWANMIDGYAKLGRVDIARRLFDEMPK 309
             ++  C K   ++  + ++  +    +    +  + ++D Y K   +D+A+RLFDE   
Sbjct: 240 VCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGA 299

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
            ++  CNAM   YVR G + +AL +F N+  +  + PD  S++  +S+ +QL +I  G +
Sbjct: 300 SNLDLCNAMASNYVRQGLTREALGVF-NLMMDSGVRPDRISMLSAISSCSQLRNILWGKS 358

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ----------------IEDGS 413
            H Y+ ++ F        ALIDMY KC   + A ++F++                +E+G 
Sbjct: 359 CHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGE 418

Query: 414 VD---------------HWNAMINGLAIHGLGELAFDLLMEME-RLSIEPDDITFTGLLN 457
           VD                WN +I+GL    L E A ++   M+ +  +  D +T   + +
Sbjct: 419 VDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIAS 478

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM 511
           AC H G +      +  + + + ++ +++    +VD+  R G  E+A ++   +
Sbjct: 479 ACGHLGALDLAKWIYYYIEK-NGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSL 531


>gi|357118977|ref|XP_003561223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 604

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 176/455 (38%), Positives = 281/455 (61%), Gaps = 7/455 (1%)

Query: 141 IHGL-LRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           +H L +R     +DL L N L+S+Y+  G    AR+L   +   D+V++N+++   ++SG
Sbjct: 109 LHALAVRAGHLPADLRLANSLLSIYLSLGAASSARRLIADIPRPDTVTWNTLLRACLRSG 168

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
            + SAR LFD MP   R+L+S+NS+L+ YA +   +  A ++F++MPERD+++WN+ML G
Sbjct: 169 LLPSARRLFDQMP--HRDLVSYNSMLSSYAAVGD-MAGAGRLFDEMPERDVVTWNTMLAG 225

Query: 260 CVKCGK-MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
             + G  M  A+A+FD MP+RDVVSW +M+DGYA+ G V +A  +FD MP+R   + N +
Sbjct: 226 YARGGADMASARAVFDAMPERDVVSWNSMLDGYAQAGDVVMAWAMFDGMPRRSAASWNVV 285

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK-- 376
           +  Y R     + L +FD M       P++ + V VL+A   LG +++G  +H  + +  
Sbjct: 286 LALYARRKDWRECLRLFDAMMAVGVSVPNEKTFVSVLTACGSLGDLERGKWVHGLVRERW 345

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
           D+   +     AL+ MY+KCG++E A ++F+ + + SV  WN+MI G  +HG  E A +L
Sbjct: 346 DRLVPDVLLLTALLTMYAKCGAMETAREIFDSMSERSVPSWNSMIIGYGLHGQSEKALEL 405

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
            +EME+    P++ TF  +L++CAH GLV EG  CF+ M R +  EP+ +H+GCM+D+LG
Sbjct: 406 FLEMEKSGPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVRFYGFEPKAEHFGCMMDLLG 465

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556
           RAG ++ + NLI+++  + +  +W  ++SA +   N  +GE V K LI M  +    Y+L
Sbjct: 466 RAGLLKDSENLIQNLQGKASPALWGIMMSASQTQNNYKLGEFVGKKLIEMKPAEFGPYLL 525

Query: 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           LSN++A  G W D  +VR +MKE   +K  G S I
Sbjct: 526 LSNIYASEGRWGDVEKVREVMKENGAEKYVGLSLI 560



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/128 (39%), Positives = 71/128 (55%), Gaps = 3/128 (2%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL-VLKACSRLGLIEEGLQIHGLL 145
           WN ++  Y+   D +E L +F  M+  GVSV      + VL AC  LG +E G  +HGL+
Sbjct: 282 WNVVLALYARRKDWRECLRLFDAMMAVGVSVPNEKTFVSVLTACGSLGDLERGKWVHGLV 341

Query: 146 RKV--AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIES 203
           R+       D+ L   L+++Y +CG +E AR++FD M  R   S+NSMI GY   G  E 
Sbjct: 342 RERWDRLVPDVLLLTALLTMYAKCGAMETAREIFDSMSERSVPSWNSMIIGYGLHGQSEK 401

Query: 204 ARELFDSM 211
           A ELF  M
Sbjct: 402 ALELFLEM 409


>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 195/583 (33%), Positives = 319/583 (54%), Gaps = 50/583 (8%)

Query: 81  KKDPFL----WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
           +++PF     W A I  +       EAL +F  +L++GV  +  + + V++AC  LG   
Sbjct: 142 ERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFG 201

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G+ I GL+ K  F   L + N LI+L +R G ++ AR++FD+M  RD VS+ +++D YV
Sbjct: 202 LGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYV 261

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPE-------- 247
           ++G++  AR +FD MP  ERN ISW++++  Y+Q  SG  + A ++F KM +        
Sbjct: 262 ETGDLREARRIFDEMP--ERNEISWSAMIARYSQ--SGYAEEALKLFSKMVQEGFKPNIS 317

Query: 248 -------------------------------RDLISWNSMLHGCVKCGKMDDAQALFDKM 276
                                          +D+   +S++    KCGK DD + +FD +
Sbjct: 318 CFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLI 377

Query: 277 PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFD 336
            +++VV W +M+ GY+  GR++    LF+ +P+++ V+   ++ GY+ N    K LE+F+
Sbjct: 378 LEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFN 437

Query: 337 NMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC 396
            +       P+ ++   VL A A +  +DKG+ +H  + K     +   G AL DMY+KC
Sbjct: 438 TLLVSGQ-TPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKC 496

Query: 397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS-IEPDDITFTGL 455
           G I ++ +VFE++ + +   W  MI GLA  G    +  L  EMER S + P+++    +
Sbjct: 497 GDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSV 556

Query: 456 LNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEP 515
           L AC+H GLV +GL  F  M +++ ++P+ +HY C+VD+L R+G +  A   I  +P +P
Sbjct: 557 LFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQP 616

Query: 516 NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRS 575
               W  LLS C+ Y++  + E  AK L  +  +NS+ YVLLSN++A  G W D   +R 
Sbjct: 617 EANAWAALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRK 676

Query: 576 MMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           +M+E+ LKK  GCSW+E+   VH F+  D S  Q  +IY  L 
Sbjct: 677 LMREKGLKKSGGCSWVEVRNQVHSFYSEDGSHSQSNEIYGTLQ 719



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 135/506 (26%), Positives = 239/506 (47%), Gaps = 113/506 (22%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAF-------------------------------GSD 153
           +LK  S  GLI +G  +H  L K  F                               GSD
Sbjct: 27  LLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGSD 86

Query: 154 LFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPI 213
           L + NC+IS YV+ G L  AR LFD+M  R+ VS++++I G +K G +E +   F+  P 
Sbjct: 87  LVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPF 146

Query: 214 RERNLISWNSVLNGYAQLKSGLQF-AWQIFEKMPERDL----ISWNSMLHGC-------- 260
             +N++SW + ++G+  +++GL F A ++F ++ E  +    +++ S++  C        
Sbjct: 147 --QNVVSWTAAISGF--VRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGL 202

Query: 261 ---------------------------VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAK 293
                                      ++ G++D A+ +FD+M KRDVVSW  ++D Y +
Sbjct: 203 GMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVE 262

Query: 294 LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI 353
            G +  ARR+FDEMP+R+ ++ +AM+  Y ++GY+ +AL++F  M  E +  P+ +    
Sbjct: 263 TGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGF-KPNISCFAC 321

Query: 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
            LSA+A L  +  G+ IH ++ K     +   G +LID+Y KCG  ++   VF+ I + +
Sbjct: 322 TLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKN 381

Query: 414 VDHWNAMINGLAIHGLG-------------------------------ELAFDLLMEMER 442
           V  WN+M+ G +I+G                                 E   ++   +  
Sbjct: 382 VVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLV 441

Query: 443 LSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY--GCMVDILGRAGH 500
               P+  TF+ +L ACA    + +G+    +  +I KL  +   +    + D+  + G 
Sbjct: 442 SGQTPNKSTFSSVLCACASIASLDKGM---NVHGKIIKLGIQYDIFVGTALTDMYAKCGD 498

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSA 526
           I +++ + E MP E N++ W  ++  
Sbjct: 499 IGSSKQVFERMP-EKNEISWTVMIQG 523


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 197/491 (40%), Positives = 293/491 (59%), Gaps = 18/491 (3%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLI---SLYVRCGYLEFARQLFDKMG 181
           VL  C  L    E  QIH  + K    +  F  + LI   SL    G L++A  +F ++ 
Sbjct: 12  VLDKCKSLC---ELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQ 68

Query: 182 IRDSVSYNSMIDGYVKSGN-IES----ARELFDSMPIRERNLISWNSVLNGYAQL---KS 233
             +S  + ++I G+  + N +ES    AR +   +        S  SVL    +L     
Sbjct: 69  HPNSFIFFALIKGFSDTSNPVESLILYAR-MLSCLNYSSGVEFSIPSVLKACGKLLAFDE 127

Query: 234 GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAK 293
           G Q   Q+ +     D    NSM+   +  G+++ A+ +FD+MP RDVVSW +MI GY K
Sbjct: 128 GRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLK 187

Query: 294 LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI 353
            G +++A+++F+ M  +DVV   +M+  YV+N   MKAL++F  M   L L PD  ++V 
Sbjct: 188 AGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREM-LSLGLRPDGPAIVS 246

Query: 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLN-GKHGVALIDMYSKCGSIENAIKVFEQIEDG 412
           VLSAIA LG +++G  +H Y+  ++  L+ G  G ALIDMYSKCG IENA  VF  I   
Sbjct: 247 VLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHR 306

Query: 413 -SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC 471
            ++  WN+MI+GLAIHGL   A D+ +EMER+ IEP++ITF GLL+ C+H GLV+EG   
Sbjct: 307 RNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFY 366

Query: 472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYE 531
           FE M   +K+ P +QHYGCM+D+ GRAG +E A  +I++MP E + + W+ +LSA   + 
Sbjct: 367 FESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHG 426

Query: 532 NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           ++ +G+  A   I +   +SSSYVLLSN++A  G W+D  ++R MM++R +KK+ GCS +
Sbjct: 427 HIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSM 486

Query: 592 ELEGVVHEFFV 602
            + G VHEF +
Sbjct: 487 LVNGKVHEFLL 497



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 134/466 (28%), Positives = 253/466 (54%), Gaps = 25/466 (5%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           ST   + +L KCK+L ++ QIHA+MI T  + +    ++L+A  S S  +   ++A  +F
Sbjct: 5   STNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVF 64

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLD--NGVSVDKFSASLVLKACS 130
            +     +  + F++ A+IK +S   +P E+L+++  ML   N  S  +FS   VLKAC 
Sbjct: 65  SRI----QHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACG 120

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
           +L   +EG Q+HG + K     D F+ N ++ +Y+  G +E AR++FD+M  RD VS+NS
Sbjct: 121 KLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNS 180

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL 250
           MI GY+K+G IE A+++F++M   ++++++W S+++ Y Q +  ++ A  +F +M    L
Sbjct: 181 MIAGYLKAGEIELAKKVFETMS--DKDVVTWTSMISAYVQNRCPMK-ALDLFREMLSLGL 237

Query: 251 -------ISWNSMLH--GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIAR 301
                  +S  S +   G V+ GK   A    +K+        + +ID Y+K G ++ A 
Sbjct: 238 RPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAY 297

Query: 302 RLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
            +F  +  +R++   N+M+ G   +G + +AL+IF  M+  + + P++ + + +LS  + 
Sbjct: 298 HVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEME-RMDIEPNEITFLGLLSTCSH 356

Query: 361 LGHIDKGVAIHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWN 418
            G +++G      + EK +     +H   +ID++ + G +E+A+ V + +  +  +  W 
Sbjct: 357 GGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWK 416

Query: 419 AMINGLAIHGLGELAFDLLMEMERLSIEPDD-ITFTGLLNACAHAG 463
           A+++    HG  E+       +  + + PDD  ++  L N  A AG
Sbjct: 417 AILSASMKHGHIEIGKS--AALRAIELAPDDSSSYVLLSNIYAKAG 460


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 198/597 (33%), Positives = 337/597 (56%), Gaps = 17/597 (2%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           QIH  ++  G+ K+  +   LV  ++   C  L + AR +F +      +++   W ++I
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAE--CGEL-DSARKVFDEM----SERNVVSWTSMI 207

Query: 92  KTYSHGLDPKEALVMFCLML-DNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAF 150
             Y+     K+A+ +F  M+ D  V+ +  +   V+ AC++L  +E G +++  +R    
Sbjct: 208 CGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGI 267

Query: 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDS 210
             +  + + L+ +Y++C  ++ A++LFD+ G  +    N+M   YV+ G    A  +F+ 
Sbjct: 268 EVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNL 327

Query: 211 M---PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISW----NSMLHGCVKC 263
           M    +R  + IS  S ++  +QL++ L +       +      SW    N+++   +KC
Sbjct: 328 MMDSGVRP-DRISMLSAISSCSQLRNIL-WGKSCHGYVLRNGFESWDNICNALIDMYMKC 385

Query: 264 GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV 323
            + D A  +FD+M  + VV+W +++ GY + G VD A   F+ MP++++V+ N ++ G V
Sbjct: 386 HRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLV 445

Query: 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG 383
           +     +A+E+F +MQ +  ++ D  +++ + SA   LG +D    I+ Y+EK+   L+ 
Sbjct: 446 QGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDV 505

Query: 384 KHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
           + G  L+DM+S+CG  E+A+ +F  + +  V  W A I  +A+ G  E A +L  +M   
Sbjct: 506 RLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQ 565

Query: 444 SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503
            ++PD + F G L AC+H GLV++G   F  M ++H + PE  HYGCMVD+LGRAG +E 
Sbjct: 566 GLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEE 625

Query: 504 ARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563
           A  LIEDMPMEPNDVIW +LL+ACR   N+ +    A+ +  +    + SYVLLSN++A 
Sbjct: 626 AVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYAS 685

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            G WND  +VR  MKE+ L+K PG S I++ G  HEF   D+S  ++ +I  MLD +
Sbjct: 686 AGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEV 742



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 139/534 (26%), Positives = 256/534 (47%), Gaps = 70/534 (13%)

Query: 14  TQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFF 73
           T++T   L+ CKT++++   H  +   G   +    TKLVA            FA+ +F 
Sbjct: 32  TKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFE 91

Query: 74  KYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLG 133
              ++      F++N++I+ Y+      EA+++F  M+++G+S DK++    L AC++  
Sbjct: 92  NSESY---GTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSR 148

Query: 134 LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMID 193
               G+QIHGL+ K+ +  DLF+QN L+  Y  CG L+ AR++FD+M  R+ VS+ SMI 
Sbjct: 149 AKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMIC 208

Query: 194 GYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISW 253
           GY +    + A +LF  M +R+   ++ NSV                           + 
Sbjct: 209 GYARRDFAKDAVDLFFRM-VRDEE-VTPNSV---------------------------TM 239

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDV----VSWANMIDGYAKLGRVDIARRLFDEMPK 309
             ++  C K   ++  + ++  +    +    +  + ++D Y K   +D+A+RLFDE   
Sbjct: 240 VCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGA 299

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
            ++  CNAM   YVR G + +AL +F N+  +  + PD  S++  +S+ +QL +I  G +
Sbjct: 300 SNLDLCNAMASNYVRQGLTREALGVF-NLMMDSGVRPDRISMLSAISSCSQLRNILWGKS 358

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ----------------IEDGS 413
            H Y+ ++ F        ALIDMY KC   + A ++F++                +E+G 
Sbjct: 359 CHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGE 418

Query: 414 VD---------------HWNAMINGLAIHGLGELAFDLLMEME-RLSIEPDDITFTGLLN 457
           VD                WN +I+GL    L E A ++   M+ +  +  D +T   + +
Sbjct: 419 VDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIAS 478

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM 511
           AC H G +      +  + + + ++ +++    +VD+  R G  E+A ++   +
Sbjct: 479 ACGHLGALDLAKWIYYYIEK-NGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSL 531


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 187/545 (34%), Positives = 301/545 (55%), Gaps = 5/545 (0%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   WN +I   S     +EAL +   M   GV +D  + +  L AC+RL  +  G Q
Sbjct: 232 ERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQ 291

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  + +     D ++ + LI LY +CG  + A+++F+ +  R+SVS+  +I G ++   
Sbjct: 292 LHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYEC 351

Query: 201 IESARELFDSM-----PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
              + ELF+ M      I +  L +  S       L  G Q      +    R ++  NS
Sbjct: 352 FSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNS 411

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           ++    KCG + +A+ +F  M +RD+VSW +MI  Y+++G +  AR  FD M  R+ +  
Sbjct: 412 LISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITW 471

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           NAM+G Y+++G     L+++  M  +  + PD  + V +    A +G    G  I  +  
Sbjct: 472 NAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTV 531

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           K    LN     A I MYSKCG I  A K+F+ +    V  WNAMI G + HG+G+ A  
Sbjct: 532 KAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAK 591

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
              +M     +PD I++  +L+ C+H+GLV+EG L F++M R+H + P L+H+ CMVD+L
Sbjct: 592 TFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLL 651

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           GRAGH+  A++LI+ MPM+P   +W  LLSAC+ + N  + E  AKH+  +DS +S SY+
Sbjct: 652 GRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYM 711

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY 615
           LL+ +++  G  +D+ +VR +M+++ +KK PG SW+E+E  VH F   D S  QV  I  
Sbjct: 712 LLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRN 771

Query: 616 MLDNM 620
            +D +
Sbjct: 772 KMDEL 776



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 126/513 (24%), Positives = 226/513 (44%), Gaps = 47/513 (9%)

Query: 14  TQSTLLLLRKCKT---LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY 70
           TQ+    LR C +   L     +H R++T G      L   L+ ++ S  C  L++  R 
Sbjct: 4   TQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLS--CGALSDARRL 61

Query: 71  I------------------FFKYHAFRE---------KKDPFLWNAIIKTYSHGLDPKEA 103
           +                  + K  +  +         ++D   WN ++  Y       + 
Sbjct: 62  LRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDG 121

Query: 104 LVMFCLMLDNGVSV-DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLIS 162
           L  F  M  +G S+ + F+   V+K+C  LG  E   Q+ GL  K  F  D  ++  L+ 
Sbjct: 122 LETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVD 181

Query: 163 LYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWN 222
           ++VRCGY++FA +LF ++        NSM+ GY K   I+ A E F+ M   ER+++SWN
Sbjct: 182 MFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMA--ERDVVSWN 239

Query: 223 SVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK---- 275
            ++   +Q   ++  L    ++  K    D  ++ S L  C +   +   + L  K    
Sbjct: 240 MMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRS 299

Query: 276 MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
           +P+ D    + +I+ YAK G    A+R+F+ +  R+ V+   ++GG ++     K++E+F
Sbjct: 300 LPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELF 359

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
           + M+ EL +  D  +L  ++S       +  G  +H    K   +       +LI +Y+K
Sbjct: 360 NQMRAEL-MAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAK 418

Query: 396 CGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGL 455
           CG ++NA  VF  + +  +  W +MI   +  G    A +    M       + IT+  +
Sbjct: 419 CGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMA----TRNAITWNAM 474

Query: 456 LNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
           L A    G  ++GL  +  M     + P+   Y
Sbjct: 475 LGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTY 507



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 98/439 (22%), Positives = 161/439 (36%), Gaps = 130/439 (29%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
            L++C   G +     +HG L  V   S +FLQN L+                       
Sbjct: 10  ALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLL----------------------- 46

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244
                     Y+  G +  AR L  +  I+E N+I+ N ++N                  
Sbjct: 47  --------HAYLSCGALSDARRLLRA-DIKEPNVITHNIMMN------------------ 79

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
                         G  K G + DA+ LFD+MP+RDV SW  ++ GY +      ARR  
Sbjct: 80  --------------GYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQ------ARRFL 119

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
           D                          LE F +M       P+  +   V+ +   LG  
Sbjct: 120 D-------------------------GLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCR 154

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS----------- 413
           +    +     K  F  +     AL+DM+ +CG ++ A ++F QIE  +           
Sbjct: 155 ELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGY 214

Query: 414 -----VDH---------------WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
                +DH               WN MI  L+  G    A  L++EM R  +  D  T+T
Sbjct: 215 AKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYT 274

Query: 454 GLLNACAHAGLVKEG-LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP 512
             L ACA    +  G  L  +++R + +++P +     ++++  + G  + A+ +   + 
Sbjct: 275 SSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA--SALIELYAKCGSFKEAKRVFNSL- 331

Query: 513 MEPNDVIWRTLLSACRNYE 531
            + N V W  L+     YE
Sbjct: 332 QDRNSVSWTVLIGGSLQYE 350


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 196/557 (35%), Positives = 295/557 (52%), Gaps = 99/557 (17%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN 217
           N ++S Y        A  LFD+M  R++VS+N MI GYVK+G +  AR++FD MP  ERN
Sbjct: 56  NAMVSAYFESHKPRDALLLFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMP--ERN 113

Query: 218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP 277
           ++SW S++ GY Q +  ++ A ++F +MP R+++SW  M+ G +K  ++DDA+ LFD +P
Sbjct: 114 VVSWTSMVRGYVQ-EGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIP 172

Query: 278 KRDVV-------------------------------SWANMIDGYAKLGRVDIARRLFDE 306
           ++DVV                               +W  M+ GYAK GRVD+AR+LF+ 
Sbjct: 173 EKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEV 232

Query: 307 MPKRD-------------------------------VVACN------------------- 316
           MP+R+                               +VACN                   
Sbjct: 233 MPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMF 292

Query: 317 ------------AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
                       AM+  + R G  ++AL +F  MQ E  +  +  S++ VLS  A L  +
Sbjct: 293 EGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQRE-GVALNFPSMISVLSVCASLASL 351

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
           D G  +H  L + +F  +      LI MY KCG +  A  +F +     V  WN+MI G 
Sbjct: 352 DHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGY 411

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
           + HGLGE A ++  +M    ++PD++TF G+L+AC+++G VKEG   FE M+  +++EP 
Sbjct: 412 SQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPG 471

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
           ++HY CMVD+LGRAG ++ A  L+E MPMEP+ ++W  LL ACRN+  L++ E   + L 
Sbjct: 472 IEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLA 531

Query: 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
            ++  N+  YVLLS+M+A  G W D   +R  +  R + K PGCSWIE+E  VH F   D
Sbjct: 532 KLEPKNAGPYVLLSHMYATKGRWRDVEVLRKKINRRVI-KFPGCSWIEVEKKVHMFTGGD 590

Query: 605 -KSRLQVRDIYYMLDNM 620
            KS  +   I  ML+ +
Sbjct: 591 SKSHPEQHMITQMLEKL 607



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 108/326 (33%), Positives = 174/326 (53%), Gaps = 32/326 (9%)

Query: 161 ISLYVRCGYLEFARQLFDKMGI--RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNL 218
           IS Y R G +  AR++FD   +  R   S+N+M+  Y +S     A  LFD MP  +RN 
Sbjct: 26  ISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMP--QRNT 83

Query: 219 ISWNSVLNGYAQLKSGLQF-AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP 277
           +S+N +++GY  +K+G+   A ++F+ MPER+++SW SM+ G V+ G +++A+ LF +MP
Sbjct: 84  VSFNGMISGY--VKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMP 141

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
           +R+VVSW  MI G  K  R+D A++LFD +P++DVV    M+GGY + G   +A E+FD 
Sbjct: 142 RRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDE 201

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
           M+          +   ++S  A+ G +D    + R L +     N     A++  Y++ G
Sbjct: 202 MKVRNVF-----TWTTMVSGYAKNGRVD----VARKLFEVMPERNEVSWTAMLMGYTQSG 252

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI------EPDDIT 451
            ++ A ++FE +    +   N MI          L F L  EM R  +      E D+ T
Sbjct: 253 RMKEAFELFEAMPVKWIVACNEMI----------LQFGLAGEMHRARMMFEGMKERDEGT 302

Query: 452 FTGLLNACAHAGLVKEGLLCFELMRR 477
           +  ++      GL  E L  F  M+R
Sbjct: 303 WNAMIKVFERKGLDLEALGLFARMQR 328



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 186/370 (50%), Gaps = 32/370 (8%)

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIF 242
           R   S  S I  Y + G+I +AR++FD+ P+ +R + SWN++++ Y +       A  +F
Sbjct: 17  RSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRD-ALLLF 75

Query: 243 EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
           ++MP+R+ +S+N M+ G VK G + DA+ +FD MP+R+VVSW +M+ GY + G V+ A +
Sbjct: 76  DQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEK 135

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI--VLSAIAQ 360
           LF EMP+R+VV+   M+GG ++      A ++FD       + P+   +V+  ++    Q
Sbjct: 136 LFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFD-------MIPEKDVVVVTNMIGGYCQ 188

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
           +G +D+     R L  +    N      ++  Y+K G ++ A K+FE + + +   W AM
Sbjct: 189 VGRLDEA----RELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAM 244

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           + G    G  + AF+L   M    I    +    ++     AG +    + FE M+    
Sbjct: 245 LMGYTQSGRMKEAFELFEAMPVKWI----VACNEMILQFGLAGEMHRARMMFEGMK---- 296

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPME------PNDVIWRTLLSACRNYENLN 534
            E +   +  M+ +  R G    A  L   M  E      P+ +   ++LS C +  +L+
Sbjct: 297 -ERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMI---SVLSVCASLASLD 352

Query: 535 VGEPVAKHLI 544
            G  V   L+
Sbjct: 353 HGRQVHARLV 362



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 137/284 (48%), Gaps = 41/284 (14%)

Query: 80  EKKDPFLWNAIIKTYSH-GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
           +++D   WNA+IK +   GLD  EAL +F  M   GV+++  S   VL  C+ L  ++ G
Sbjct: 296 KERDEGTWNAMIKVFERKGLD-LEALGLFARMQREGVALNFPSMISVLSVCASLASLDHG 354

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
            Q+H  L +  F  DL++ + LI++YV+CG L  A+ +F++   +D V +NSMI GY + 
Sbjct: 355 RQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQH 414

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLH 258
           G  E A  +F  M                     SG+Q            D +++  +L 
Sbjct: 415 GLGEEALNVFHDM-------------------CSSGVQ-----------PDEVTFIGVLS 444

Query: 259 GCVKCGKMDDAQALFDKMP-----KRDVVSWANMIDGYAKLGRVDIARRLFDEMP-KRDV 312
            C   GK+ +   +F+ M      +  +  +A M+D   + GRVD A  L ++MP + D 
Sbjct: 445 ACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDA 504

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           +   A++G   RN   +   E+   ++    L P +A   ++LS
Sbjct: 505 IVWGALLGA-CRNHMKLDLAEV--AVEKLAKLEPKNAGPYVLLS 545



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 100/189 (52%), Gaps = 26/189 (13%)

Query: 16  STLLLLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTE----FA 68
           S + +L  C +L  ++   Q+HAR++ + F ++ ++ + L+  +    C  L      F 
Sbjct: 337 SMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVK--CGDLVRAKGIFN 394

Query: 69  RYIFFKYHAFREKKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           R++F         KD  +WN++I  YS HGL  +EAL +F  M  +GV  D+ +   VL 
Sbjct: 395 RFLF---------KDVVMWNSMITGYSQHGLG-EEALNVFHDMCSSGVQPDEVTFIGVLS 444

Query: 128 ACSRLGLIEEGLQIHGLLR---KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR- 183
           ACS  G ++EG +I   ++   +V  G + +   C++ L  R G ++ A +L +KM +  
Sbjct: 445 ACSYSGKVKEGFEIFEAMKCTYQVEPGIEHY--ACMVDLLGRAGRVDEAMELVEKMPMEP 502

Query: 184 DSVSYNSMI 192
           D++ + +++
Sbjct: 503 DAIVWGALL 511


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 178/546 (32%), Positives = 312/546 (57%), Gaps = 7/546 (1%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   WN ++   S     +EAL +   M + GV +D  + +  L AC++L  +  G Q
Sbjct: 256 ERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQ 315

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  + +     D ++ + ++ LY +CG  + AR++F  +  R++VS+  +I G+++ G 
Sbjct: 316 LHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGC 375

Query: 201 IESARELFDSM--PIRERNLISWNSVLNGYAQLKSGLQFAWQI----FEKMPERDLISWN 254
              + ELF+ M   +   +  +  ++++G +  +  +  A Q+     +    R ++  N
Sbjct: 376 FSESLELFNQMRAELMTVDQFALATIISGCSN-RMDMCLARQLHSLSLKSGHTRAVVISN 434

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
           S++    KCG + +A+++F  M +RD+VSW  M+  Y+++G +  AR  FD M  R+V+ 
Sbjct: 435 SLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVIT 494

Query: 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
            NAM+G Y+++G     L+++  M  E  + PD  + V +    A +G    G  I  + 
Sbjct: 495 WNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHT 554

Query: 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
            K    L+     A+I MYSKCG I  A K+F+ +    +  WNAMI G + HG+G+ A 
Sbjct: 555 VKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAI 614

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
           ++  +M +   +PD I++  +L++C+H+GLV+EG   F++++R H + P L+H+ CMVD+
Sbjct: 615 EIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDL 674

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           L RAG++  A+NLI++MPM+P   +W  LLSAC+ + N  + E  AKHL  +DS +S  Y
Sbjct: 675 LARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAAKHLFDLDSPDSGGY 734

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           +LL+ ++A  G   D+ +VR +M+++ +KK PG SW+E++  VH F   D S  QV  I 
Sbjct: 735 MLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNKVHVFKAEDVSHPQVIAIR 794

Query: 615 YMLDNM 620
             LD +
Sbjct: 795 EKLDEL 800



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 138/572 (24%), Positives = 253/572 (44%), Gaps = 69/572 (12%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV-DKFSASLVLKACSRLGLIEEGL 139
           ++D   WN ++  Y       +A+  F  M  +G S+ + F+    +K+C  LG  E  L
Sbjct: 123 RRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVAL 182

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           Q+ GLL K  F  D  +   ++ ++VRCG ++FA + F ++        NSM+ GY KS 
Sbjct: 183 QLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSY 242

Query: 200 NIESARELFDSMPIRERNLISWN---SVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
            ++ A ELF+SMP  ER+++SWN   S L+   + +  L  A  +  +    D  ++ S 
Sbjct: 243 GVDHALELFESMP--ERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSS 300

Query: 257 LHGCVKC-----GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           L  C K      GK   AQ +   +P  D    + M++ YAK G    ARR+F  +  R+
Sbjct: 301 LTACAKLSSLGWGKQLHAQVI-RSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRN 359

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
            V+   ++GG+++ G   ++LE+F+ M+ EL +  D  +L  ++S  +    +     +H
Sbjct: 360 TVSWTVLIGGFLQYGCFSESLELFNQMRAEL-MTVDQFALATIISGCSNRMDMCLARQLH 418

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
               K   +       +LI MY+KCG+++NA  +F  +E+  +  W  M+   +  G   
Sbjct: 419 SLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIG 478

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            A +    M   ++    IT+  +L A    G  ++GL  +  M                
Sbjct: 479 KAREFFDGMSTRNV----ITWNAMLGAYIQHGAEEDGLKMYSAM---------------- 518

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIG----MD 547
                           + +  + P+ V + TL   C +     +G+ +  H +     +D
Sbjct: 519 ----------------LTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILD 562

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
           +S  ++ +    M++  G  ++AR++   +  ++L      SW     ++  +      +
Sbjct: 563 TSVMNAVI---TMYSKCGRISEARKIFDFLSRKDL-----VSW---NAMITGYSQHGMGK 611

Query: 608 LQVRDIYYMLDNMWTPD-----SVATSCTHYG 634
             +     ML     PD     +V +SC+H G
Sbjct: 612 QAIEIFDDMLKKGAKPDYISYVAVLSSCSHSG 643



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 115/535 (21%), Positives = 208/535 (38%), Gaps = 121/535 (22%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFAR---------- 174
            L++C   G +     +HG L  V   S +FLQN L+  Y+ CG L  AR          
Sbjct: 34  ALRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEP 93

Query: 175 ----------------------QLFDKMGIRDSVSYNSMIDGYVKSGNIESARELF---- 208
                                 +LF +M  RD  S+N+++ GY +SG    A E F    
Sbjct: 94  NVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMR 153

Query: 209 ---DSMP--------IRERNLISWNSV------------LNGYAQLKSGL---------- 235
              DS+P        ++    + W+ V              G   + +G+          
Sbjct: 154 RSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAV 213

Query: 236 QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG 295
            FA + F ++    +   NSML G  K   +D A  LF+ MP+RDVVSW  M+   ++ G
Sbjct: 214 DFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSG 273

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
           R   A  +  +M  R V                                  D  +    L
Sbjct: 274 RAREALSVAVDMHNRGV--------------------------------RLDSTTYTSSL 301

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
           +A A+L  +  G  +H  + +    ++     A++++Y+KCG  + A +VF  + D +  
Sbjct: 302 TACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTV 361

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            W  +I G   +G    + +L  +M    +  D      +++ C++        +C  L 
Sbjct: 362 SWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSN-----RMDMC--LA 414

Query: 476 RRIHKLEPELQHY------GCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSACR 528
           R++H L  +  H         ++ +  + G+++ A ++     ME  D++ W  +L+A  
Sbjct: 415 RQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSS--MEERDIVSWTGMLTAYS 472

Query: 529 NYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRS-MMKERNL 582
              N+       +   GM + N  ++  +   +   G   D  ++ S M+ E+++
Sbjct: 473 QVGNIG---KAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDV 524



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 19/188 (10%)

Query: 31  NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAI 90
           +QI    +  G I +T +   ++  +S   C  ++E AR IF     F  +KD   WNA+
Sbjct: 548 DQITGHTVKVGLILDTSVMNAVITMYS--KCGRISE-ARKIF----DFLSRKDLVSWNAM 600

Query: 91  IKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRK-- 147
           I  YS HG+  K+A+ +F  ML  G   D  S   VL +CS  GL++EG     +L++  
Sbjct: 601 ITGYSQHGMG-KQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDH 659

Query: 148 -VAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS-YNSMIDGYVKSGNIE--- 202
            V+ G + F  +C++ L  R G L  A+ L D+M ++ +   + +++      GN E   
Sbjct: 660 NVSPGLEHF--SCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAE 717

Query: 203 -SARELFD 209
            +A+ LFD
Sbjct: 718 LAAKHLFD 725


>gi|356518597|ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g21470-like [Glycine max]
          Length = 535

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 187/514 (36%), Positives = 302/514 (58%), Gaps = 9/514 (1%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           + +P  W   I+ +      + AL+ +      GV  D   A L+ KAC+ L  +     
Sbjct: 9   RNNPSHWFCSIRNHIQQGSLRCALLAYKQTRHEGV-YDSSVAPLLFKACASLPFLHYVKA 67

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H    K    SD+ +   L++ Y +CG +  AR LFD M  R+ V++N+MI GY+++G+
Sbjct: 68  LHAESIKAGSESDVIIGTALLTTYSKCGVVRDARNLFDTMPERNVVTWNAMISGYLRNGD 127

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE--RDLISWNSMLH 258
            ESA  +F+ M  + +  ++W+ ++ G+A+    +  A ++F+++P   +++++W  M+ 
Sbjct: 128 TESAYLVFEKM--QGKTQVTWSQMIGGFAR-NGDIATARRLFDEVPHELKNVVTWTVMVD 184

Query: 259 GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
           G  + G+M+ A+ +F+ MP+R+   W++MI GY K G V  A  +FD +P R++   N+M
Sbjct: 185 GYARIGEMEAAREVFEMMPERNCFVWSSMIHGYFKKGNVTEAAAVFDWVPVRNLEIWNSM 244

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
           + GYV+NG+  KAL  F+ M  E +  PD+ ++V VLSA AQLGH+D G  IH  +E   
Sbjct: 245 IAGYVQNGFGEKALLAFEGMGAEGF-EPDEFTVVSVLSACAQLGHLDVGKQIHHMIEHKG 303

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
             +N      L+DMY+KCG + NA  VFE   + ++  WNAMI+G AI+G      +   
Sbjct: 304 IVVNPFVLSGLVDMYAKCGDLVNARLVFEGFTEKNIFCWNAMISGFAINGKCSEVLEFFG 363

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
            ME  +I PD ITF  +L+ACAH GLV E L     M   +++E  ++HYGCMVD+LGRA
Sbjct: 364 RMEESNIRPDGITFLTVLSACAHRGLVTEALEVISKMEG-YRIEIGIKHYGCMVDLLGRA 422

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY-VLL 557
           G ++ A +LI  MPM+PND +   +L ACR + ++N+ E V K +     + +SS+ VLL
Sbjct: 423 GRLKDAYDLIVRMPMKPNDTVLGAMLGACRIHSDMNMAEQVMKLICEEPVTGASSHNVLL 482

Query: 558 SNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           SN++A    W  A R++ +  +   +++PGCS I
Sbjct: 483 SNIYAASEKWEKAERMKRITVDGGSQRIPGCSSI 516


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 187/545 (34%), Positives = 301/545 (55%), Gaps = 5/545 (0%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   WN +I   S     +EAL +   M   GV +D  + +  L AC+RL  +  G Q
Sbjct: 222 ERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQ 281

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  + +     D ++ + LI LY +CG  + A+++F+ +  R+SVS+  +I G ++   
Sbjct: 282 LHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYEC 341

Query: 201 IESARELFDSM-----PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
              + ELF+ M      I +  L +  S       L  G Q      +    R ++  NS
Sbjct: 342 FSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNS 401

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           ++    KCG + +A+ +F  M +RD+VSW +MI  Y+++G +  AR  FD M  R+ +  
Sbjct: 402 LISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITW 461

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           NAM+G Y+++G     L+++  M  +  + PD  + V +    A +G    G  I  +  
Sbjct: 462 NAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTV 521

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           K    LN     A I MYSKCG I  A K+F+ +    V  WNAMI G + HG+G+ A  
Sbjct: 522 KAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAK 581

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
              +M     +PD I++  +L+ C+H+GLV+EG L F++M R+H + P L+H+ CMVD+L
Sbjct: 582 TFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLL 641

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           GRAGH+  A++LI+ MPM+P   +W  LLSAC+ + N  + E  AKH+  +DS +S SY+
Sbjct: 642 GRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYM 701

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY 615
           LL+ +++  G  +D+ +VR +M+++ +KK PG SW+E+E  VH F   D S  QV  I  
Sbjct: 702 LLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRN 761

Query: 616 MLDNM 620
            +D +
Sbjct: 762 KMDEL 766



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 122/495 (24%), Positives = 219/495 (44%), Gaps = 29/495 (5%)

Query: 10  PCNSTQSTLLLLRKCKT---LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTE 66
           P   TQ+    LR C +   L     +H R++T G      L   L+ ++ S  C  L++
Sbjct: 16  PHAVTQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLS--CGALSD 73

Query: 67  FARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV------DKF 120
             R +     A  ++ +    N ++  Y+      +A  +F  M    V+       D  
Sbjct: 74  ARRLL----RADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTS 129

Query: 121 SASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
             +    +C  LG  E   Q+ GL  K  F  D  ++  L+ ++VRCGY++FA +LF ++
Sbjct: 130 RPAGSWMSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQI 189

Query: 181 GIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQF 237
                   NSM+ GY K   I+ A E F+ M   ER+++SWN ++   +Q   ++  L  
Sbjct: 190 ERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMA--ERDVVSWNMMIAALSQSGRVREALGL 247

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK----MPKRDVVSWANMIDGYAK 293
             ++  K    D  ++ S L  C +   +   + L  K    +P+ D    + +I+ YAK
Sbjct: 248 VVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAK 307

Query: 294 LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI 353
            G    A+R+F+ +  R+ V+   ++GG ++     K++E+F+ M+ EL +  D  +L  
Sbjct: 308 CGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAEL-MAIDQFALAT 366

Query: 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
           ++S       +  G  +H    K   +       +LI +Y+KCG ++NA  VF  + +  
Sbjct: 367 LISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERD 426

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE 473
           +  W +MI   +  G    A +    M       + IT+  +L A    G  ++GL  + 
Sbjct: 427 IVSWTSMITAYSQIGNIIKAREFFDGMA----TRNAITWNAMLGAYIQHGAEEDGLKMYS 482

Query: 474 LMRRIHKLEPELQHY 488
            M     + P+   Y
Sbjct: 483 AMLSQKDVTPDWVTY 497


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 208/589 (35%), Positives = 326/589 (55%), Gaps = 47/589 (7%)

Query: 72  FFKYHAFREKKDPF---------LWNAIIKTYSH------GLDPKEAL-----VMFCLML 111
           + K   FRE K  F          WN+I+  Y+       GL   EA+     V + LM+
Sbjct: 150 YAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMV 209

Query: 112 DNGVSV-DKFSASLVLKACSRLGLIEEGLQIHGLLR--KVAFGSDLFLQ---------NC 159
           D  V V D  SA +  K      ++     + G     ++    +LF +         N 
Sbjct: 210 DGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNA 269

Query: 160 LISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLI 219
           +I  YVR   ++ A +LF +M  +DSVS+ +MI+GYV+ G +  ARE+ + MP +  N+ 
Sbjct: 270 MIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYK--NIA 327

Query: 220 SWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK 278
           +  +++NGY  L+SG +  A +IF ++  RD + WNSM+ G   CG+ D+A  LF +M  
Sbjct: 328 AQTAMINGY--LQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVC 385

Query: 279 RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM 338
           +D+VSW  MI  YA+ G++D A  +F+EM +R+VV+ N+++ GYV+NG   +AL  F  M
Sbjct: 386 KDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILM 445

Query: 339 QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS 398
           + +    PD  ++V  L A A L  ++ GV +H    K  F  +     A++ MY+K G 
Sbjct: 446 K-QQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGR 504

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
           +  A  VF +I++  V  WN++I G A++G G+ A +L   M    I PD++TFTGLL+A
Sbjct: 505 VPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSA 564

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
           C H G V +GL  F+ M   + ++P+ +HY C++++LGR G +E A  +++ M    +  
Sbjct: 565 CNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAK 624

Query: 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578
           IW  LL ACR + NL + +  A+ L+ ++  N+S+YVLLSNM A  G W+   RVR +MK
Sbjct: 625 IWGALLWACRIHHNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMK 684

Query: 579 ERNLKKLPGCSWIELEGVVHEFFVRDKSRLQ---------VRDIYYMLD 618
           E   +K PGCSWIE++  +H F  +    L+         VR+  +MLD
Sbjct: 685 ENKAEKQPGCSWIEIDNQLHCFLSKAPPDLRPEICNILKTVRNTEWMLD 733



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 197/391 (50%), Gaps = 25/391 (6%)

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMIDGYVKSGNIESARELF 208
           F  D++    +I+ Y R G LE AR+LF+ +  + D+V  N++I GY K      A++LF
Sbjct: 104 FKRDIYSWTLMITCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLF 163

Query: 209 DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDD 268
           D M +  +N++SWNS+L+GY +    +Q   Q FE M ER+++SWN M+ G V  G +D 
Sbjct: 164 DEMLV--KNVVSWNSILSGYTK-NGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDS 220

Query: 269 AQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYS 328
           A   F K+P  +VVSW  M+ G+A  GR+  AR LF+EMP +++V+ NAM+G YVR    
Sbjct: 221 AWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQI 280

Query: 329 MKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVA 388
             A ++F  M        D  S   +++   ++G + +   I   +     +       A
Sbjct: 281 DDAYKLFMEMP-----EKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQ----TA 331

Query: 389 LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD 448
           +I+ Y + G ++ A ++F QI       WN+MI G A  G  + A  L  EM    +  D
Sbjct: 332 MINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEM----VCKD 387

Query: 449 DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARN-- 506
            +++  ++ A A AG + + L  F  M+     E  +  +  ++    + G    A N  
Sbjct: 388 MVSWNTMIAAYAQAGQMDKALEMFNEMQ-----ERNVVSWNSLITGYVQNGLYFEALNCF 442

Query: 507 -LIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
            L++    +P+       L A  N   LNVG
Sbjct: 443 ILMKQQGEKPDQTTIVCCLRASANLAALNVG 473



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/440 (28%), Positives = 221/440 (50%), Gaps = 40/440 (9%)

Query: 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDS 210
           GS +F QN  IS   R G +E A  +F +M  R+ V+YNSMI  Y K+G I +ARELFD 
Sbjct: 12  GSYVFTQNLRISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDL 71

Query: 211 MPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQ 270
           MP  +RNL+SWNS++ GY      ++ A ++F++M +RD+ SW  M+    + G+++ A+
Sbjct: 72  MP--QRNLVSWNSMIAGYLH-NELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKAR 128

Query: 271 ALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSM 329
            LF+ +P K+D V    +I GYAK      A++LFDEM  ++VV+ N+++ GY +NG   
Sbjct: 129 ELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQ 188

Query: 330 KALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVAL 389
             L+ F+ M        +  S  +++     +G +D      + +     + N    V +
Sbjct: 189 LGLQFFEAMG-----ERNVVSWNLMVDGYVGVGDLDSAWMFFKKIP----TPNVVSWVTM 239

Query: 390 IDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD 449
           +  ++  G +  A  +F ++   ++  WNAMI         + A+ L MEM     E D 
Sbjct: 240 LSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMP----EKDS 295

Query: 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP--ELQHYGCMVDILGRAGHIEAARNL 507
           +++T ++N     G + +        R I  L P   +     M++   ++G ++ A  +
Sbjct: 296 VSWTAMINGYVRVGKLLQA-------REILNLMPYKNIAAQTAMINGYLQSGRMDEANEI 348

Query: 508 IEDMPMEPNDVIWRTLLSA---C-RNYENLNV-GEPVAKHLIGMDSSNSSSYVLLSNMFA 562
              + +  + V W ++++    C R  E L +  E V K ++  ++   ++Y     M  
Sbjct: 349 FSQISVR-DSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTM-IAAYAQAGQMDK 406

Query: 563 GLGMWNDARRVRSMMKERNL 582
            L M+N+       M+ERN+
Sbjct: 407 ALEMFNE-------MQERNV 419


>gi|354805181|gb|AER41600.1| CRR4 [Oryza glaberrima]
          Length = 540

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 189/518 (36%), Positives = 286/518 (55%), Gaps = 45/518 (8%)

Query: 110 MLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY 169
           M   GV    F+ + +L+AC+ LGL       HG + +  FGSD+F+QN L+ +Y RCG 
Sbjct: 1   MRAQGVPPYGFTFTFLLRACALLGLPRPCGCFHGQIVRCGFGSDVFVQNALMDVYHRCGG 60

Query: 170 LEF-------ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWN 222
                     ARQ+FD+M  RD VS+NS++  Y+ SG+   A   F++MP  ERN++SWN
Sbjct: 61  GGGGGGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMP--ERNVVSWN 118

Query: 223 SVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV 282
           +V+ G+A++   +  AW +F++MP R+ +SWN M+ G    G ++ A+++FD+M ++DVV
Sbjct: 119 TVVAGFARMGD-MVTAWAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVV 177

Query: 283 SWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
           SW  M+  YAK+G +D A  LFD MP +++V+ NAM+ GY  N    +AL  F  M  E 
Sbjct: 178 SWTAMVSAYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEG 237

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENA 402
              PD+A+LV V+SA AQLG ++    I  ++ K    L    G ALIDM++KCG +  A
Sbjct: 238 RFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRA 297

Query: 403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
             +F ++E   +  W  MI+G A +GL   A  +   M R  ++ DD  F   L ACAH 
Sbjct: 298 QSIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHG 357

Query: 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRT 522
           GL++EG   F  M   + ++P ++HYGCMVD+LGRA  IE                    
Sbjct: 358 GLLQEGWSIFNEMVERYNIQPRMEHYGCMVDLLGRAELIEY------------------- 398

Query: 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
                           V+K +  ++  NSS  VL+SN  A  G W+     R+ M+   +
Sbjct: 399 ----------------VSKKITELEPFNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGI 442

Query: 583 KKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +K+PG S I++   VHEF  +D    + ++IY  +D +
Sbjct: 443 EKVPGSSSIQVGSEVHEFLAKDTRHKRRKEIYETVDGL 480



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 88/183 (48%), Gaps = 4/183 (2%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG-VSVDKFSASLVLKACSRLGLIEEGLQ 140
           K+   WNA+I  Y+H     EAL  F LM+  G    D+ +   V+ AC++LG +E    
Sbjct: 205 KNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNW 264

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           I   + K      + L N LI ++ +CG +  A+ +F KM  R  +++ +MI G+  +G 
Sbjct: 265 ISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGL 324

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSG--LQFAWQIFEKMPERDLISWNSMLH 258
              A  ++++M  RE   +     +   A    G  LQ  W IF +M ER  I      +
Sbjct: 325 CRDALLVYNNM-CREGVQLDDTVFIAALAACAHGGLLQEGWSIFNEMVERYNIQPRMEHY 383

Query: 259 GCV 261
           GC+
Sbjct: 384 GCM 386


>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial [Vitis vinifera]
          Length = 694

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 193/531 (36%), Positives = 310/531 (58%), Gaps = 45/531 (8%)

Query: 102 EALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLI 161
           EA+ +F  M   GV  ++ + + V+ A S +G I     +H L  K+   +   +   L+
Sbjct: 167 EAIGVFKDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLV 226

Query: 162 SLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISW 221
            +Y  C  L  AR LFD++  R+ V++N M++GY KSG ++ AR+LF+ +P   ++++SW
Sbjct: 227 HMYCVCSSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIP--AKDVVSW 284

Query: 222 NSVLNGYAQLKSGLQFAWQIFEKM------PER----DLIS------------------- 252
            ++++GY Q++  L  A +++  M      P      DLIS                   
Sbjct: 285 GTIIDGYVQIER-LGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIV 343

Query: 253 ----------WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
                       +++H    CG+++ A   F+   K  V SW  +I G+ + G ++ AR+
Sbjct: 344 RTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQ 403

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           LFDEMP+RDV + ++M+ GY +N     AL++F  M     + P++ ++V V SAIA LG
Sbjct: 404 LFDEMPERDVFSWSSMISGYSQNEQPDLALQLFHEMVAG-GVQPNEITMVSVFSAIATLG 462

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED--GSVDHWNAM 420
            + +G   H Y+  +   LN     ALIDMY+KCGSI  A+++F +I+D   SV  WNA+
Sbjct: 463 TLMEGRWAHEYILSNSIPLNDNLNAALIDMYAKCGSITIALQLFYEIQDRVSSVSPWNAI 522

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           I GLA+HG   ++  L  +++R+ I+P+ ITF G+L+AC HAGLV  G   F+ M+ ++ 
Sbjct: 523 ICGLAMHGHANVSLKLFSQLQRVRIKPNSITFIGVLSACCHAGLVDTGEKYFKGMKNLYN 582

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           +EP ++HYGCM+D+LGRAG ++ A  +I  MPM+ + VIW TLL+ACR + N+ +GE  A
Sbjct: 583 IEPNIKHYGCMIDLLGRAGRLKEAAEMIRKMPMKADVVIWGTLLAACRTHGNVEIGERAA 642

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           ++L  +D S+ +  VLLSN++A  G W+DA  VR  M+ + +KK PGCS +
Sbjct: 643 ENLAKLDISHGAGRVLLSNIYADAGRWDDAFLVRRAMQSQRMKKSPGCSGV 693



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 148/533 (27%), Positives = 244/533 (45%), Gaps = 126/533 (23%)

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           LK+CS L  + +G QIH L+ K    S++F++N LIS YV+C  +  AR LFD   + D 
Sbjct: 59  LKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFDTCSVLDP 118

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ---------LKSGLQ 236
           VS N M+ GYVKSG++++AR LF+ MPI  +  +S+ +++ G AQ         +   ++
Sbjct: 119 VSCNIMLAGYVKSGSLDNARHLFEKMPI--KGCVSYTTMVMGLAQNNCWLEAIGVFKDMR 176

Query: 237 FAWQIFEKMPERDLISWNS---------MLHG---------------------CVKCGKM 266
           FA  I  ++    +IS  S         MLH                      CV C  +
Sbjct: 177 FAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCV-CSSL 235

Query: 267 DDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNG 326
            +A+ LFD++P+R+VV+W  M++GY+K G VD+AR LF+ +P +DVV+   ++ GYV+  
Sbjct: 236 GNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYVQIE 295

Query: 327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG 386
              +AL ++ +M     + P++  +V ++SA  +   + +G   H  + +  F       
Sbjct: 296 RLGEALRMYRSM-LRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQ 354

Query: 387 VALIDMYSKCGSIENAIKVFEQIEDGSVDH---WNAMINGLAIHGLGE------------ 431
             +I  Y+ CG I  A   F Q E GS DH   WNA+I+G   +G+ E            
Sbjct: 355 ATIIHFYAACGEINLA---FLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPER 411

Query: 432 -------------------LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG---- 468
                              LA  L  EM    ++P++IT   + +A A  G + EG    
Sbjct: 412 DVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRWAH 471

Query: 469 --------------------------------LLCFELMRRIHKLEPELQHYGCMVDILG 496
                                            L +E+  R+  + P    +  ++  L 
Sbjct: 472 EYILSNSIPLNDNLNAALIDMYAKCGSITIALQLFYEIQDRVSSVSP----WNAIICGLA 527

Query: 497 RAGHIEAARNL---IEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
             GH   +  L   ++ + ++PN + +  +LSAC +   ++ GE   K+  GM
Sbjct: 528 MHGHANVSLKLFSQLQRVRIKPNSITFIGVLSACCHAGLVDTGE---KYFKGM 577



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 125/262 (47%), Gaps = 21/262 (8%)

Query: 64  LTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSAS 123
           + E AR +F +      ++D F W+++I  YS    P  AL +F  M+  GV  ++ +  
Sbjct: 397 MIEQARQLFDEM----PERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMV 452

Query: 124 LVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183
            V  A + LG + EG   H  +   +   +  L   LI +Y +CG +  A QLF +  I+
Sbjct: 453 SVFSAIATLGTLMEGRWAHEYILSNSIPLNDNLNAALIDMYAKCGSITIALQLFYE--IQ 510

Query: 184 DSVS----YNSMIDGYVKSGNIESARELFDSMP-IR-ERNLISWNSVLNGYAQLKSGL-Q 236
           D VS    +N++I G    G+   + +LF  +  +R + N I++  VL+  A   +GL  
Sbjct: 511 DRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSITFIGVLS--ACCHAGLVD 568

Query: 237 FAWQIFEKMPERDLISWNSMLHGCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDG 290
              + F+ M     I  N   +GC+     + G++ +A  +  KMP K DVV W  ++  
Sbjct: 569 TGEKYFKGMKNLYNIEPNIKHYGCMIDLLGRAGRLKEAAEMIRKMPMKADVVIWGTLLAA 628

Query: 291 YAKLGRVDIARRLFDEMPKRDV 312
               G V+I  R  + + K D+
Sbjct: 629 CRTHGNVEIGERAAENLAKLDI 650


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 175/467 (37%), Positives = 271/467 (58%), Gaps = 7/467 (1%)

Query: 158 NCLISLYVRC---GYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR 214
           NCL++ Y +    G L  AR+LFD +   D+VSYN+++  +   G+I+ A  +F +MP+R
Sbjct: 42  NCLLAGYAKASGPGRLADARRLFDSIPHPDAVSYNTLLSCHFACGDIDGAWRVFSTMPVR 101

Query: 215 ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFD 274
           +  + SWN++++G ++    ++ A  +F  MP R+ +SWN+M+      G M  A+ LF 
Sbjct: 102 D--VTSWNTMVSGLSK-NGAIEEAEAMFRAMPARNAVSWNAMVAARASSGDMGAAENLFR 158

Query: 275 KMP-KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE 333
             P K D + W  M+ GY   G V  A   F  MP R++V+ NA++ GYV+N  +  AL 
Sbjct: 159 NAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALR 218

Query: 334 IFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMY 393
           +F  M  +  + P+ ++L  VL   + L  +  G  +H++  K     +   G +L+ MY
Sbjct: 219 VFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMY 278

Query: 394 SKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
            KCG +++A K+F+++    +  WNAMI+G A HG G  A  L  +M+   + PD IT  
Sbjct: 279 CKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLL 338

Query: 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPM 513
            +L AC H GL   G+ CFE M+  + +EP++ HY CMVD+L RAG +E A N+I  MP 
Sbjct: 339 AVLTACIHTGLCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPF 398

Query: 514 EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV 573
           EP+   + TLL+ACR Y+NL   E  A+ LI  D  N+ +YV L+N++A    W+D  RV
Sbjct: 399 EPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANRWDDVSRV 458

Query: 574 RSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           R  MK+  + K PG SW+E++GV HEF   D+   Q+  I+  LD +
Sbjct: 459 RRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLDLIHDKLDRL 505



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 100/199 (50%), Gaps = 9/199 (4%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNG-VSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
           WNA++  Y       +AL +F  M+++  V  +  + S VL  CS L  +  G Q+H   
Sbjct: 200 WNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWC 259

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
            K+  G  + +   L+S+Y +CG L+ A +LFD+M  +D V++N+MI GY + G    A 
Sbjct: 260 MKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAI 319

Query: 206 ELFDSMPIRERNLISWNSVLNGY-AQLKSGL-QFAWQIFEKMPERDLIS-----WNSMLH 258
           +LF+ M   E  +  W ++L    A + +GL  F  Q FE M E   I      ++ M+ 
Sbjct: 320 KLFEKMK-DEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQVDHYSCMVD 378

Query: 259 GCVKCGKMDDAQALFDKMP 277
              + G ++ A  +   MP
Sbjct: 379 LLCRAGLLERAVNMIHSMP 397


>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 491

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 174/446 (39%), Positives = 271/446 (60%), Gaps = 10/446 (2%)

Query: 179 KMG-IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQ 236
           K+G + D+   N++ID Y K+G    AR++FD MP  ER+++SWN+ +   A ++ G L 
Sbjct: 33  KLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMP--ERDVVSWNTAM--AAMVREGELA 88

Query: 237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR 296
              ++F++MPE+D +SWN++L G  K G+++ A  LF +MP+R+VVSW+ M+ GY K G 
Sbjct: 89  GVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGD 148

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           +++AR +FD+MP +++V    M+    + G   +A ++F  M+ E  +  D A++V +L+
Sbjct: 149 LEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMK-EASVELDVAAVVSILA 207

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVF--EQIEDGSV 414
           A A+ G +  G  IHRY+ K     +     ALIDM+ KCG +  A  VF  E ++  SV
Sbjct: 208 ACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSV 267

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
             WN++I G A+HG G+ A +L  +M++    PD +T   +L+AC H G V EG   F  
Sbjct: 268 S-WNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSN 326

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534
           M R + + P+++HYGCM+D+LGR G I+ A +LI+ MP EPN+VIW +LLSACR ++N+ 
Sbjct: 327 MERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVE 386

Query: 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
             E     L  +  SN+ +Y +LSN++A  G W+D  + R  MK    +K  G SW+EL 
Sbjct: 387 YAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELN 446

Query: 595 GVVHEFFVRDKSRLQVRDIYYMLDNM 620
              HEF V D+       I  M+D +
Sbjct: 447 ETFHEFTVGDRKHQDSDQISEMVDRL 472



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 129/462 (27%), Positives = 227/462 (49%), Gaps = 88/462 (19%)

Query: 81  KKDPFLWNAIIKTYSH-GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           ++D F ++ +IK  S  G+ P  A+    + L  G   D F  + ++ A S+ G   +  
Sbjct: 3   RRDSFTYSFLIKALSAAGVAPVRAVHSHVVKL--GSVEDTFVGNALIDAYSKNGGFSDAR 60

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           ++   + +     D+   N  ++  VR G L   R+LFD+M  +D+VS+N+++DGY K+G
Sbjct: 61  KVFDEMPE----RDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAG 116

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
            +E+A ELF  MP  ERN++SW+++++GY + K  L+ A  IF+KMP ++L++W  M+  
Sbjct: 117 EVEAAFELFQRMP--ERNVVSWSTMVSGYCK-KGDLEMARVIFDKMPSKNLVTWTIMVSA 173

Query: 260 CVKCGKMDDAQALFDKMPKR----DVVSWAN----------------------------- 286
           C + G +D+A  LF +M +     DV +  +                             
Sbjct: 174 CAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRS 233

Query: 287 ------MIDGYAKLGRVDIARRLFD-EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQ 339
                 +ID + K G V+ A  +FD E  ++D V+ N+++GG+  +G+  KALE+F  M+
Sbjct: 234 THVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMK 293

Query: 340 CELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSI 399
            + + +PD  +++ VLSA   +G +D+G        +  FS                 ++
Sbjct: 294 QQGF-NPDAVTMINVLSACTHMGFVDEG--------RRHFS-----------------NM 327

Query: 400 ENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
           E    +  QIE     H+  MI+ L   GL + A DL+  M     EP+++ +  LL+AC
Sbjct: 328 ERDYGIMPQIE-----HYGCMIDLLGRGGLIKEAVDLIKSM---PWEPNEVIWGSLLSAC 379

Query: 460 AHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGH 500
                V+   +    +  + KL+P    +Y  + +I   AG 
Sbjct: 380 RLHKNVEYAEIA---VNELSKLQPSNAGNYAVLSNIYAEAGQ 418


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 202/668 (30%), Positives = 337/668 (50%), Gaps = 88/668 (13%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           L  K   +  + Q H  ++      + +  + L+ +     CT L     Y+   + +  
Sbjct: 7   LASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLIN-----CTRLHAHPAYVDSIFTS-S 60

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
              D  +++ ++K YS      + + +F       +    F    ++K   +      G 
Sbjct: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGK-----SGN 115

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG------------------ 181
             H  + K+    D F++N ++ +Y + G ++ AR LF++M                   
Sbjct: 116 MFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSG 175

Query: 182 -------------IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGY 228
                         R+ +++ SM+ GY K G++ESAR  FD MP  ER+++SWN++ + Y
Sbjct: 176 NETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMP--ERSVVSWNAMQSAY 233

Query: 229 AQL---KSGLQFAWQIFEKMPERDLISWNSMLHGC------------------------- 260
           AQ    K  L    Q+ E+    D  +W   +  C                         
Sbjct: 234 AQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNS 293

Query: 261 ----------VKCGKMDDAQALFDKM-PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
                      K G ++ A+ +FD++  +R+ V+W  MI  Y ++G++ +AR LFD MPK
Sbjct: 294 FVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPK 353

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           RDVV+ N+M+ GY +NG S  ++E+F  M   + + PD+ ++  VLSA   +G +     
Sbjct: 354 RDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYW 413

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
           +   + +    L      +LI MYSKCGS+ +A ++F+ +    V  +N +I+G A +G 
Sbjct: 414 VLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGH 473

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
           G+ A  L++ ME   IEPD +T+ G+L AC+HAGL+ EG   F+ ++      P + HY 
Sbjct: 474 GKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYA 528

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549
           CMVD+LGRAG ++ A+ LI+ MPM+P+  ++ +LL+A R ++ + +GE  A  L  ++  
Sbjct: 529 CMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQ 588

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQ 609
           N  +YVLLSN++A  G W D +RVR MMK+  LKK  G SW+E +G VH+F V D+S  Q
Sbjct: 589 NLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQ 648

Query: 610 VRDIYYML 617
            +DIY +L
Sbjct: 649 SKDIYKLL 656


>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
          Length = 921

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 191/527 (36%), Positives = 295/527 (55%), Gaps = 45/527 (8%)

Query: 97  GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFL 156
           G  P++AL  F  M       D F+ S ++KA S  G+          +R V        
Sbjct: 418 GGAPRDALAAFSAMPRR----DSFTYSFLIKALSAAGVAP--------VRAVH------- 458

Query: 157 QNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRER 216
                S  V+ G +E            D+   N++ID Y K+G    AR++FD MP  ER
Sbjct: 459 -----SHVVKLGSVE------------DTFVGNALIDAYSKNGGFSDARKVFDEMP--ER 499

Query: 217 NLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK 275
           +++SWN+ +   A ++ G L    ++F++MPE+D +SWN++L G  K G+++ A  LF +
Sbjct: 500 DVVSWNTAM--AAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQR 557

Query: 276 MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
           MP+R+VVSW+ M+ GY K G +++AR +FD+MP +++V    M+    + G   +A ++F
Sbjct: 558 MPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLF 617

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
             M+ E  +  D A++V +L+A A+ G +  G  IHRY+ K     +     ALIDM+ K
Sbjct: 618 AQMK-EASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCK 676

Query: 396 CGSIENAIKVF--EQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
           CG +  A  VF  E ++  SV  WN++I G A+HG G+ A +L  +M++    PD +T  
Sbjct: 677 CGCVNRADYVFDTETVQKDSVS-WNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMI 735

Query: 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPM 513
            +L+AC H G V EG   F  M R + + P+++HYGCM+D+LGR G I+ A +LI+ MP 
Sbjct: 736 NVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPW 795

Query: 514 EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV 573
           EPN+VIW +LLSACR ++N+   E     L  +  SN+ +Y +LSN++A  G W+D  + 
Sbjct: 796 EPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKA 855

Query: 574 RSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           R  MK    +K  G SW+EL    HEF V D+       I  M+D +
Sbjct: 856 RMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRL 902



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 131/463 (28%), Positives = 227/463 (49%), Gaps = 90/463 (19%)

Query: 81  KKDPFLWNAIIKTYSH-GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           ++D F ++ +IK  S  G+ P  A+    + L  G   D F  + ++ A S+ G   +  
Sbjct: 433 RRDSFTYSFLIKALSAAGVAPVRAVHSHVVKL--GSVEDTFVGNALIDAYSKNGGFSDAR 490

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           ++   + +     D+   N  ++  VR G L   R+LFD+M  +D+VS+N+++DGY K+G
Sbjct: 491 KVFDEMPE----RDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAG 546

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
            +E+A ELF  MP  ERN++SW+++++GY + K  L+ A  IF+KMP ++L++W  M+  
Sbjct: 547 EVEAAFELFQRMP--ERNVVSWSTMVSGYCK-KGDLEMARVIFDKMPSKNLVTWTIMVSA 603

Query: 260 CVKCGKMDDAQALFDKMPKR----DVVSWAN----------------------------- 286
           C + G +D+A  LF +M +     DV +  +                             
Sbjct: 604 CAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRS 663

Query: 287 ------MIDGYAKLGRVDIARRLFD-EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQ 339
                 +ID + K G V+ A  +FD E  ++D V+ N+++GG+  +G+  KALE+F  M+
Sbjct: 664 THVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMK 723

Query: 340 CELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSI 399
            + + +PD  +++ VLSA   +G +D+G        +  FS                 ++
Sbjct: 724 QQGF-NPDAVTMINVLSACTHMGFVDEG--------RRHFS-----------------NM 757

Query: 400 ENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
           E    +  QIE     H+  MI+ L   GL + A DL+  M     EP+++ +  LL+AC
Sbjct: 758 ERDYGIMPQIE-----HYGCMIDLLGRGGLIKEAVDLIKSM---PWEPNEVIWGSLLSAC 809

Query: 460 A-HAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGH 500
             H  +    +   EL     KL+P    +Y  + +I   AG 
Sbjct: 810 RLHKNVEYAEIAVNEL----SKLQPSNAGNYAVLSNIYAEAGQ 848


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 206/637 (32%), Positives = 324/637 (50%), Gaps = 43/637 (6%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+ C  L      +  H  +   GF  N  +   LVA +S   C  L E +  + F   
Sbjct: 168 VLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSR--CGSLEEAS--MIFDEI 223

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLML------DNGVSVDKFSASLVLKACS 130
             R   D   WN+I+  +    +   AL +F  M             D  S   +L AC 
Sbjct: 224 TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 283

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
            L  + +  ++HG   +     D+F+ N LI  Y +CG +E A ++F+ M  +D VS+N+
Sbjct: 284 SLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 343

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNL----ISWNSVLNGYAQLKSGLQFAWQIFEKM- 245
           M+ GY +SGN E+A ELF +M  R+ N+    ++W +V+ GY+Q     + A  +F +M 
Sbjct: 344 MVAGYSQSGNFEAAFELFKNM--RKENIPLDVVTWTAVIAGYSQRGCSHE-ALNLFRQMI 400

Query: 246 ---PERDLISWNSMLHGCVKCGKMDDAQALFDKMPK--------------RDVVSWANMI 288
                 + ++  S+L  C   G       +     K               D++ +  +I
Sbjct: 401 FSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALI 460

Query: 289 DGYAKLGRVDIARRLFDEMP--KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELY-LH 345
           D Y+K      AR +FD++P  +R+VV    M+GG+ + G S  AL++F  M  E Y + 
Sbjct: 461 DMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVA 520

Query: 346 PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVA--LIDMYSKCGSIENAI 403
           P+  ++  +L A A L  I  G  IH Y+ +     +  + VA  LIDMYSKCG ++ A 
Sbjct: 521 PNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTAR 580

Query: 404 KVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAG 463
            VF+ +   S   W +M+ G  +HG G  A D+  +M +    PDDITF  +L AC+H G
Sbjct: 581 HVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCG 640

Query: 464 LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTL 523
           +V +GL  F+ M   + L P  +HY C +D+L R+G ++ A   ++DMPMEP  V+W  L
Sbjct: 641 MVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVAL 700

Query: 524 LSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583
           LSACR + N+ + E     L+ M++ N  SY L+SN++A  G W D  R+R +MK+  +K
Sbjct: 701 LSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIK 760

Query: 584 KLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           K PGCSW++ +     FFV D+S      IY +L+++
Sbjct: 761 KRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESL 797



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 174/561 (31%), Positives = 273/561 (48%), Gaps = 64/561 (11%)

Query: 20  LLRKCKTLNDVNQIHARMITTG--------------------FIKNTHLTTKLVASFSSS 59
           LL++CK+ N V+QIH ++I +G                    FI    L T +VAS+ + 
Sbjct: 50  LLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVASYLAC 109

Query: 60  PCTPLTEFARYIFFKYHAFREKKDPFLW-NAIIKTYSHGLDPKEALVMFCLMLDNGVSVD 118
             T   ++A  +       R    P +W N +I+ +        A+ + C ML  G   D
Sbjct: 110 GAT---DYALLVLE-----RVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPD 161

Query: 119 KFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD 178
            F+   VLKAC  L     G   HGL+    F S++F+ N L+++Y RCG LE A  +FD
Sbjct: 162 HFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFD 221

Query: 179 KM---GIRDSVSYNSMIDGYVKSGNIESARELFDSM-------PIRER-NLISWNSVLNG 227
           ++   GI D +S+NS++  +VKS N  +A +LF  M       P  ER ++IS  ++L  
Sbjct: 222 EITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPA 281

Query: 228 YAQLKSGLQ---FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSW 284
              LK+  Q               D+   N+++    KCG M++A  +F+ M  +DVVSW
Sbjct: 282 CGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSW 341

Query: 285 ANMIDGYAKLGRVDIARRLFDEMPKR----DVVACNAMMGGYVRNGYSMKALEIFDNMQC 340
             M+ GY++ G  + A  LF  M K     DVV   A++ GY + G S +AL +F  M  
Sbjct: 342 NAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIF 401

Query: 341 ELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY-LEKDQFSLNGKHGV---------ALI 390
              L P+  +++ VLSA A LG   +G  IH Y L+    +L+   G          ALI
Sbjct: 402 SGSL-PNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALI 460

Query: 391 DMYSKCGSIENAIKVFEQI--EDGSVDHWNAMINGLAIHGLGELAFDLLMEM--ERLSIE 446
           DMYSKC S + A  +F+ I  E+ +V  W  MI G A +G    A  L +EM  E   + 
Sbjct: 461 DMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVA 520

Query: 447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG-CMVDILGRAGHIEAAR 505
           P+  T + +L ACAH   ++ G      + R H+ E        C++D+  + G ++ AR
Sbjct: 521 PNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTAR 580

Query: 506 NLIEDMPMEPNDVIWRTLLSA 526
           ++ + M  + + + W ++++ 
Sbjct: 581 HVFDSMS-QKSAISWTSMMTG 600


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 181/545 (33%), Positives = 307/545 (56%), Gaps = 5/545 (0%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   WN ++   S     +EAL M   M   GV +D  + +  L AC+RL  +  G Q
Sbjct: 252 ERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQ 311

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  + +     D ++ + L+ LY + G  + A+ +F+ +  R++V++  +I G+++ G 
Sbjct: 312 LHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGC 371

Query: 201 IESARELFDSMPIRERNL--ISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNS 255
              + ELF+ M      L   +  ++++G      L  G Q      +    + ++  NS
Sbjct: 372 FTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNS 431

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           ++    KC  +  A+A+F  M ++D+VSW +MI  Y+++G V  AR  FD M +++V+  
Sbjct: 432 LISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITW 491

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           NAM+G Y+++G     L ++  M  E Y+ PD  + V +    A LG    G  I     
Sbjct: 492 NAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTV 551

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           K    ++     A+I MYSKCG I  A KVF+ +    +  WNAMI G + HG+G+ A +
Sbjct: 552 KVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIE 611

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           +  ++ +   +PD I++  +L+ C+H+GLV+EG   F++M+R H + P L+H+ CMVD+L
Sbjct: 612 IFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLL 671

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           GRAGH+  A++LI+DMPM+P   +W  LLSAC+ + N  + E  AKH+  +DS +S SY+
Sbjct: 672 GRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYM 731

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY 615
           L++ ++A  G  +D+ ++R +M+++ +KK PG SW+E++  VH F   D S  QV  I  
Sbjct: 732 LMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRK 791

Query: 616 MLDNM 620
            LD +
Sbjct: 792 KLDEL 796



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 123/499 (24%), Positives = 220/499 (44%), Gaps = 83/499 (16%)

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQ-LFDKMGIRD 184
           L++C   G +     +HG L  V   S +FLQN L+  Y+ CG L  AR+ L   +   +
Sbjct: 31  LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPN 90

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ-------------- 230
            +++N M++GY K G +  A ELF  MP   R++ SWN++++GY Q              
Sbjct: 91  VITHNVMLNGYAKLGRLSDAVELFGRMP--ARDVASWNTLMSGYFQSRQYLVSLETFLSM 148

Query: 231 ----------------LKSGLQFAW-----------QIFEKMPERDLISWNSMLHGCVKC 263
                           +KS     W           Q F+   + ++ +  +++   V+C
Sbjct: 149 HRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAA--ALVDMFVRC 206

Query: 264 GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV 323
           G +D A  LF ++ +  +    +M+ GY K   VD A  LFD MP+RDVV+ N M+    
Sbjct: 207 GAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALS 266

Query: 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG 383
           ++G   +AL++  +MQ +  +  D  +    L+A A+L  +  G  +H  + ++   ++ 
Sbjct: 267 QSGRVREALDMVVDMQSK-GVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDP 325

Query: 384 KHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
               AL+++Y+K G  + A  VF  + D +   W  +I+G   +G    + +L  +M   
Sbjct: 326 YVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAE 385

Query: 444 SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503
            +  D      L++ C          LC  L R++H L        C+     ++G I+A
Sbjct: 386 LMTLDQFALATLISGCC-----SRMDLC--LGRQLHSL--------CL-----KSGQIQA 425

Query: 504 ARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563
                         V+  +L+S     +NL   E + +    M+  +  S+  +   ++ 
Sbjct: 426 V-------------VVSNSLISMYAKCDNLQSAEAIFRF---MNEKDIVSWTSMITAYSQ 469

Query: 564 LGMWNDARRVRSMMKERNL 582
           +G    AR     M E+N+
Sbjct: 470 VGNVAKAREFFDGMSEKNV 488



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 197/416 (47%), Gaps = 17/416 (4%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVS-VDKFSASLVLKACSRLGLIEEGLQ 140
           +D   WN ++  Y        +L  F  M  +G S  + F+ +  +K+C  LG     LQ
Sbjct: 120 RDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQ 179

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +  +++K     D  +   L+ ++VRCG ++ A +LF ++        NSM+ GYVK+  
Sbjct: 180 LLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYG 239

Query: 201 IESARELFDSMPIRERNLISWN---SVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
           ++ A ELFDSMP  ER+++SWN   S L+   +++  L     +  K    D  ++ S L
Sbjct: 240 VDHALELFDSMP--ERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSL 297

Query: 258 HGCVKC-----GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
             C +      GK   AQ + + +P  D    + +++ YAK G    A+ +F+ +  R+ 
Sbjct: 298 TACARLSSLRWGKQLHAQVIRN-LPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNN 356

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           VA   ++ G+++ G   +++E+F+ M+ EL +  D  +L  ++S       +  G  +H 
Sbjct: 357 VAWTVLISGFLQYGCFTESVELFNQMRAEL-MTLDQFALATLISGCCSRMDLCLGRQLHS 415

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
              K           +LI MY+KC ++++A  +F  + +  +  W +MI   +  G    
Sbjct: 416 LCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAK 475

Query: 433 AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
           A +    M     E + IT+  +L A    G  ++GL  +++M     + P+   Y
Sbjct: 476 AREFFDGMS----EKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTY 527



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 106/221 (47%), Gaps = 24/221 (10%)

Query: 1   MFVSANYNQPCNSTQSTLLLLRKCKTLND---VNQIHARMITTGFIKNTHLTTKLVASFS 57
           + +S  Y +P   T  TL   + C  L      +QI  R +  G I +T +   ++  +S
Sbjct: 513 VMLSEEYVRPDWVTYVTLF--KGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYS 570

Query: 58  SSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVS 116
              C  + E AR +F     F   KD   WNA+I  YS HG+  K+A+ +F  +L  G  
Sbjct: 571 --KCGRILE-ARKVF----DFLNVKDIVSWNAMITGYSQHGMG-KQAIEIFDDILKRGAK 622

Query: 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRK---VAFGSDLFLQNCLISLYVRCGYLEFA 173
            D  S   VL  CS  GL++EG     ++++   ++ G + F  +C++ L  R G+L  A
Sbjct: 623 PDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHF--SCMVDLLGRAGHLTEA 680

Query: 174 RQLFDKMGIRDSVS-YNSMIDGYVKSGNIE----SARELFD 209
           + L D M ++ +   + +++      GN E    +A+ +F+
Sbjct: 681 KDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFE 721


>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 548

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 204/578 (35%), Positives = 308/578 (53%), Gaps = 77/578 (13%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           L + CK    + QIHA M+  G + N  +  +L+ S S S    L ++A  +F +     
Sbjct: 18  LWQNCKNFRTLMQIHAFMVVNGLMSNLSVVGELIYSASLSVPGAL-KYAHKLFEEI---- 72

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
            K D  + N +++  +  L P++ + ++  M   GVS D+++ + VLKACS+L     G 
Sbjct: 73  PKPDVSICNHVLRGSAQSLKPEKTVALYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGF 132

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
            IHG + +  F         L++ YV+                      N++I  +   G
Sbjct: 133 AIHGKVVRHGF---------LLNEYVK----------------------NALILFHANCG 161

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
           ++  A ELFD      +                                  ++W+SM  G
Sbjct: 162 DLGIASELFDDSAKAHK----------------------------------VAWSSMTSG 187

Query: 260 CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM 319
             K GK+D+A  LFD+MP +D V+W  MI G  K   +D AR LFD   ++DVV  NAM+
Sbjct: 188 YAKRGKIDEAMRLFDEMPDKDQVAWNVMITGCLKCREMDSARELFDRFTEKDVVTWNAMI 247

Query: 320 GGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY-LEKDQ 378
            GYV  GY  +AL IF  M+ +   HPD  +++ +LSA A LG ++ G  +H Y LE   
Sbjct: 248 SGYVNCGYPKEALSIFKEMR-DAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETAS 306

Query: 379 FSLNGKHGV----ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
            S +   G     ALIDMY+KCGSI+ AI+VF  ++D  +  WN +I GLA+H   E + 
Sbjct: 307 VSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGMKDRDLSTWNTLIVGLALHH-AEGSV 365

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
           ++  EM+RL + P+++TF G++ AC+H+G V EG   F LMR ++ +EP ++HYGCMVD+
Sbjct: 366 EMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDM 425

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           LGRAG +E A   +E M +EPN ++WRTLL AC+ Y N+ +G+   + L+ M    S  Y
Sbjct: 426 LGRAGLLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDY 485

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           VLLSN++A  G W+  ++VR M  +  +KK  G S IE
Sbjct: 486 VLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGISLIE 523


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 220/684 (32%), Positives = 359/684 (52%), Gaps = 74/684 (10%)

Query: 8   NQPCNSTQSTLLLLRKCKTLNDV--NQIHARMITTG------FIKNTHLTTKLVASFSSS 59
           N P +S     LL    K+ +      IHAR+I  G      F+ N +L    V + SSS
Sbjct: 7   NPPSHSDACVHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTN-NLLNLYVKTGSSS 65

Query: 60  PC------TPL-TEFARYIFFKYHA-----------FRE--KKDPFLWNAIIKTYSHGLD 99
                    PL T F+       HA           F E  + D   W  +I  Y+H   
Sbjct: 66  DAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGL 125

Query: 100 PKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNC 159
            K A+  F  M+ +G+S  +F+ + VL +C+    ++ G ++H  + K+     + + N 
Sbjct: 126 FKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANS 185

Query: 160 LISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLI 219
           L+++Y +CG    A+ +FD+M ++D+ ++N+MI  +++    + A  LFD M   + +++
Sbjct: 186 LLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMT--DPDIV 243

Query: 220 SWNSVLNGYAQ----LKSGLQFAWQIFEKMPERDLISWNSMLHGC-----VKCGK----- 265
           SWNS++ GY      +++   F++ +     + D  +  S+L  C     +K GK     
Sbjct: 244 SWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAH 303

Query: 266 -----MDDAQALFDKM----------------------PKRDVVSWANMIDGYAKLGRVD 298
                +D A A+ + +                      P  +V+++ +++DGY K+G +D
Sbjct: 304 IVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDID 363

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
            AR +FD +  RDVVA  AM+ GY +NG    AL +F  M  E    P++ +L  VLS I
Sbjct: 364 PARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIRE-GPKPNNYTLAAVLSVI 422

Query: 359 AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI-EDGSVDHW 417
           + L  +D G  +H    + +   +   G ALI MYS+ GSI++A K+F  I        W
Sbjct: 423 SSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTW 482

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
            +MI  LA HGLG  A +L  +M R++++PD IT+ G+L+AC H GLV++G   F LM+ 
Sbjct: 483 TSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKN 542

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
           +H +EP   HY CM+D+LGRAG +E A N I +MP+EP+ V W +LLS+CR ++ +++ +
Sbjct: 543 VHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAK 602

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVV 597
             A+ L+ +D +NS +Y+ L+N  +  G W DA +VR  MK++ +KK  G SW++++  V
Sbjct: 603 VAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKV 662

Query: 598 HEFFVRDKSRLQVRDIYYMLDNMW 621
           H F V D    Q   IY M+  +W
Sbjct: 663 HIFGVEDALHPQRDAIYCMISKIW 686


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 202/668 (30%), Positives = 338/668 (50%), Gaps = 88/668 (13%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           L  K   +  + Q H  ++      + +  + L+ +     CT L     Y+   + +  
Sbjct: 7   LASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLIN-----CTRLHAHPAYVDSIFTS-S 60

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
              D  +++ ++K YS      + + +F       +    F    ++K   + G +    
Sbjct: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNL---- 116

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG------------------ 181
             H  + K+    D F++N ++ +Y + G ++ AR LF++M                   
Sbjct: 117 -FHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSG 175

Query: 182 -------------IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGY 228
                         R+ +++ SM+ GY K G++ESAR  FD MP  ER+++SWN++ + Y
Sbjct: 176 NETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMP--ERSVVSWNAMQSAY 233

Query: 229 AQL---KSGLQFAWQIFEKMPERDLISWNSMLHGC------------------------- 260
           AQ    K  L    Q+ E+    D  +W   +  C                         
Sbjct: 234 AQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNS 293

Query: 261 ----------VKCGKMDDAQALFDKM-PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
                      K G ++ A+ +FD++  +R+ V+W  MI  Y ++G++ +AR LFD MPK
Sbjct: 294 FVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPK 353

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           RDVV+ N+M+ GY +NG S  ++E+F  M   + + PD+ ++  VLSA   +G +     
Sbjct: 354 RDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYW 413

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
           +   + +    L      +LI MYSKCGS+ +A ++F+ +    V  +N +I+G A +G 
Sbjct: 414 VLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGH 473

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
           G+ A  L++ ME   IEPD +T+ G+L AC+HAGL+ EG   F+ ++      P + HY 
Sbjct: 474 GKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYA 528

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549
           CMVD+LGRAG ++ A+ LI+ MPM+P+  ++ +LL+A R ++ + +GE  A  L  ++  
Sbjct: 529 CMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQ 588

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQ 609
           N  +YVLLSN++A  G W D +RVR MMK+  LKK  G SW+E +G VH+F V D+S  Q
Sbjct: 589 NLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQ 648

Query: 610 VRDIYYML 617
            +DIY +L
Sbjct: 649 SKDIYKLL 656


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 181/545 (33%), Positives = 307/545 (56%), Gaps = 5/545 (0%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   WN ++   S     +EAL M   M   GV +D  + +  L AC+RL  +  G Q
Sbjct: 232 ERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQ 291

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  + +     D ++ + L+ LY + G  + A+ +F+ +  R++V++  +I G+++ G 
Sbjct: 292 LHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGC 351

Query: 201 IESARELFDSMPIRERNL--ISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNS 255
              + ELF+ M      L   +  ++++G      L  G Q      +    + ++  NS
Sbjct: 352 FTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNS 411

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           ++    KC  +  A+A+F  M ++D+VSW +MI  Y+++G V  AR  FD M +++V+  
Sbjct: 412 LISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITW 471

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           NAM+G Y+++G     L ++  M  E Y+ PD  + V +    A LG    G  I     
Sbjct: 472 NAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTV 531

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           K    ++     A+I MYSKCG I  A KVF+ +    +  WNAMI G + HG+G+ A +
Sbjct: 532 KVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIE 591

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           +  ++ +   +PD I++  +L+ C+H+GLV+EG   F++M+R H + P L+H+ CMVD+L
Sbjct: 592 IFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLL 651

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           GRAGH+  A++LI+DMPM+P   +W  LLSAC+ + N  + E  AKH+  +DS +S SY+
Sbjct: 652 GRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYM 711

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY 615
           L++ ++A  G  +D+ ++R +M+++ +KK PG SW+E++  VH F   D S  QV  I  
Sbjct: 712 LMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRK 771

Query: 616 MLDNM 620
            LD +
Sbjct: 772 KLDEL 776



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 123/499 (24%), Positives = 220/499 (44%), Gaps = 83/499 (16%)

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQ-LFDKMGIRD 184
           L++C   G +     +HG L  V   S +FLQN L+  Y+ CG L  AR+ L   +   +
Sbjct: 11  LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPN 70

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ-------------- 230
            +++N M++GY K G +  A ELF  MP   R++ SWN++++GY Q              
Sbjct: 71  VITHNVMLNGYAKLGRLSDAVELFGRMP--ARDVASWNTLMSGYFQSRQYLVSLETFLSM 128

Query: 231 ----------------LKSGLQFAW-----------QIFEKMPERDLISWNSMLHGCVKC 263
                           +KS     W           Q F+   + ++ +  +++   V+C
Sbjct: 129 HRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAA--ALVDMFVRC 186

Query: 264 GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV 323
           G +D A  LF ++ +  +    +M+ GY K   VD A  LFD MP+RDVV+ N M+    
Sbjct: 187 GAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALS 246

Query: 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG 383
           ++G   +AL++  +MQ +  +  D  +    L+A A+L  +  G  +H  + ++   ++ 
Sbjct: 247 QSGRVREALDMVVDMQSK-GVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDP 305

Query: 384 KHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
               AL+++Y+K G  + A  VF  + D +   W  +I+G   +G    + +L  +M   
Sbjct: 306 YVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAE 365

Query: 444 SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503
            +  D      L++ C          LC  L R++H L        C+     ++G I+A
Sbjct: 366 LMTLDQFALATLISGCC-----SRMDLC--LGRQLHSL--------CL-----KSGQIQA 405

Query: 504 ARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563
                         V+  +L+S     +NL   E + +    M+  +  S+  +   ++ 
Sbjct: 406 V-------------VVSNSLISMYAKCDNLQSAEAIFRF---MNEKDIVSWTSMITAYSQ 449

Query: 564 LGMWNDARRVRSMMKERNL 582
           +G    AR     M E+N+
Sbjct: 450 VGNVAKAREFFDGMSEKNV 468



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 197/416 (47%), Gaps = 17/416 (4%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVS-VDKFSASLVLKACSRLGLIEEGLQ 140
           +D   WN ++  Y        +L  F  M  +G S  + F+ +  +K+C  LG     LQ
Sbjct: 100 RDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQ 159

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +  +++K     D  +   L+ ++VRCG ++ A +LF ++        NSM+ GYVK+  
Sbjct: 160 LLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYG 219

Query: 201 IESARELFDSMPIRERNLISWN---SVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
           ++ A ELFDSMP  ER+++SWN   S L+   +++  L     +  K    D  ++ S L
Sbjct: 220 VDHALELFDSMP--ERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSL 277

Query: 258 HGCVKC-----GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
             C +      GK   AQ + + +P  D    + +++ YAK G    A+ +F+ +  R+ 
Sbjct: 278 TACARLSSLRWGKQLHAQVIRN-LPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNN 336

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           VA   ++ G+++ G   +++E+F+ M+ EL +  D  +L  ++S       +  G  +H 
Sbjct: 337 VAWTVLISGFLQYGCFTESVELFNQMRAEL-MTLDQFALATLISGCCSRMDLCLGRQLHS 395

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
              K           +LI MY+KC ++++A  +F  + +  +  W +MI   +  G    
Sbjct: 396 LCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAK 455

Query: 433 AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
           A +    M     E + IT+  +L A    G  ++GL  +++M     + P+   Y
Sbjct: 456 AREFFDGMS----EKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTY 507



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 94/188 (50%), Gaps = 19/188 (10%)

Query: 31  NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAI 90
           +QI  R +  G I +T +   ++  +S   C  + E AR +F     F   KD   WNA+
Sbjct: 524 DQIIGRTVKVGLIIDTSVANAVITMYS--KCGRILE-ARKVF----DFLNVKDIVSWNAM 576

Query: 91  IKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRK-- 147
           I  YS HG+  K+A+ +F  +L  G   D  S   VL  CS  GL++EG     ++++  
Sbjct: 577 ITGYSQHGMG-KQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAH 635

Query: 148 -VAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS-YNSMIDGYVKSGNIE--- 202
            ++ G + F  +C++ L  R G+L  A+ L D M ++ +   + +++      GN E   
Sbjct: 636 NISPGLEHF--SCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAE 693

Query: 203 -SARELFD 209
            +A+ +F+
Sbjct: 694 LAAKHVFE 701


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 206/637 (32%), Positives = 324/637 (50%), Gaps = 43/637 (6%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+ C  L      +  H  +   GF  N  +   LVA +S   C  L E +  + F   
Sbjct: 161 VLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSR--CGSLEEAS--MIFDEI 216

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLML------DNGVSVDKFSASLVLKACS 130
             R   D   WN+I+  +    +   AL +F  M             D  S   +L AC 
Sbjct: 217 TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 276

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
            L  + +  ++HG   +     D+F+ N LI  Y +CG +E A ++F+ M  +D VS+N+
Sbjct: 277 SLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 336

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNL----ISWNSVLNGYAQLKSGLQFAWQIFEKM- 245
           M+ GY +SGN E+A ELF +M  R+ N+    ++W +V+ GY+Q     + A  +F +M 
Sbjct: 337 MVAGYSQSGNFEAAFELFKNM--RKENIPLDVVTWTAVIAGYSQRGCSHE-ALNLFRQMI 393

Query: 246 ---PERDLISWNSMLHGCVKCGKMDDAQALFDKMPK--------------RDVVSWANMI 288
                 + ++  S+L  C   G       +     K               D++ +  +I
Sbjct: 394 FSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALI 453

Query: 289 DGYAKLGRVDIARRLFDEMP--KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELY-LH 345
           D Y+K      AR +FD++P  +R+VV    M+GG+ + G S  AL++F  M  E Y + 
Sbjct: 454 DMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVA 513

Query: 346 PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVA--LIDMYSKCGSIENAI 403
           P+  ++  +L A A L  I  G  IH Y+ +     +  + VA  LIDMYSKCG ++ A 
Sbjct: 514 PNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTAR 573

Query: 404 KVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAG 463
            VF+ +   S   W +M+ G  +HG G  A D+  +M +    PDDITF  +L AC+H G
Sbjct: 574 HVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCG 633

Query: 464 LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTL 523
           +V +GL  F+ M   + L P  +HY C +D+L R+G ++ A   ++DMPMEP  V+W  L
Sbjct: 634 MVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVAL 693

Query: 524 LSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583
           LSACR + N+ + E     L+ M++ N  SY L+SN++A  G W D  R+R +MK+  +K
Sbjct: 694 LSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIK 753

Query: 584 KLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           K PGCSW++ +     FFV D+S      IY +L+++
Sbjct: 754 KRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESL 790



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 174/561 (31%), Positives = 273/561 (48%), Gaps = 64/561 (11%)

Query: 20  LLRKCKTLNDVNQIHARMITTG--------------------FIKNTHLTTKLVASFSSS 59
           LL++CK+ N V+QIH ++I +G                    FI    L T +VAS+ + 
Sbjct: 43  LLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVASYLAC 102

Query: 60  PCTPLTEFARYIFFKYHAFREKKDPFLW-NAIIKTYSHGLDPKEALVMFCLMLDNGVSVD 118
             T   ++A  +       R    P +W N +I+ +        A+ + C ML  G   D
Sbjct: 103 GAT---DYALLVLE-----RVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPD 154

Query: 119 KFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD 178
            F+   VLKAC  L     G   HGL+    F S++F+ N L+++Y RCG LE A  +FD
Sbjct: 155 HFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFD 214

Query: 179 KM---GIRDSVSYNSMIDGYVKSGNIESARELFDSM-------PIRER-NLISWNSVLNG 227
           ++   GI D +S+NS++  +VKS N  +A +LF  M       P  ER ++IS  ++L  
Sbjct: 215 EITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPA 274

Query: 228 YAQLKSGLQ---FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSW 284
              LK+  Q               D+   N+++    KCG M++A  +F+ M  +DVVSW
Sbjct: 275 CGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSW 334

Query: 285 ANMIDGYAKLGRVDIARRLFDEMPKR----DVVACNAMMGGYVRNGYSMKALEIFDNMQC 340
             M+ GY++ G  + A  LF  M K     DVV   A++ GY + G S +AL +F  M  
Sbjct: 335 NAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIF 394

Query: 341 ELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY-LEKDQFSLNGKHGV---------ALI 390
              L P+  +++ VLSA A LG   +G  IH Y L+    +L+   G          ALI
Sbjct: 395 SGSL-PNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALI 453

Query: 391 DMYSKCGSIENAIKVFEQI--EDGSVDHWNAMINGLAIHGLGELAFDLLMEM--ERLSIE 446
           DMYSKC S + A  +F+ I  E+ +V  W  MI G A +G    A  L +EM  E   + 
Sbjct: 454 DMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVA 513

Query: 447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG-CMVDILGRAGHIEAAR 505
           P+  T + +L ACAH   ++ G      + R H+ E        C++D+  + G ++ AR
Sbjct: 514 PNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTAR 573

Query: 506 NLIEDMPMEPNDVIWRTLLSA 526
           ++ + M  + + + W ++++ 
Sbjct: 574 HVFDSMS-QKSAISWTSMMTG 593


>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 208/589 (35%), Positives = 325/589 (55%), Gaps = 47/589 (7%)

Query: 72  FFKYHAFREKKDPF---------LWNAIIKTYSH------GLDPKEAL-----VMFCLML 111
           + K   FRE K  F          WN+I+  Y+       GL   EA+     V + LM+
Sbjct: 150 YAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMV 209

Query: 112 DNGVSV-DKFSASLVLKACSRLGLIEEGLQIHGLLR--KVAFGSDLFLQ---------NC 159
           D  V V D  SA +  K      ++     + G     ++    +LF +         N 
Sbjct: 210 DGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNA 269

Query: 160 LISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLI 219
           +I  YVR   ++ A +LF +M  +DSVS+ +MI+GYV+ G +  ARE+ + MP +  N+ 
Sbjct: 270 MIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYK--NIA 327

Query: 220 SWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK 278
           +  +++NGY  L+SG +  A +IF ++  RD + WNSM+ G   CG+ D+A  LF +M  
Sbjct: 328 AQTAMINGY--LQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVC 385

Query: 279 RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM 338
           +D+VSW  MI  YA+ G++D A  +F+EM +R+VV+ N+++ GYV+NG   +AL  F  M
Sbjct: 386 KDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILM 445

Query: 339 QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS 398
           + +    PD  ++V  L A A L  ++ GV +H    K  F  +     A++ MY+K G 
Sbjct: 446 K-QQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGR 504

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
           +  A  VF +I+   V  WN++I G A++G G+ A +L   M    I PD++TFTGLL+A
Sbjct: 505 VPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSA 564

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
           C H G V +GL  F+ M   + ++P+ +HY C++++LGR G +E A  +++ M    +  
Sbjct: 565 CNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAK 624

Query: 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578
           IW  LL ACR + NL + +  A+ L+ ++  N+S+YVLLSNM A  G W+   RVR +MK
Sbjct: 625 IWGALLWACRIHHNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMK 684

Query: 579 ERNLKKLPGCSWIELEGVVHEFFVRDKSRLQ---------VRDIYYMLD 618
           E   +K PGCSWIE++  +H F  +    L+         VR+  +MLD
Sbjct: 685 ENKAEKQPGCSWIEIDNQLHCFLSKAPPDLRPEICNILKTVRNTEWMLD 733



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 197/391 (50%), Gaps = 25/391 (6%)

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMIDGYVKSGNIESARELF 208
           F  D++    +I+ Y R G LE AR+LF+ +  + D+V  N++I GY K      A++LF
Sbjct: 104 FKRDIYSWTLMITCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLF 163

Query: 209 DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDD 268
           D M +  +N++SWNS+L+GY +    +Q   Q FE M ER+++SWN M+ G V  G +D 
Sbjct: 164 DEMLV--KNVVSWNSILSGYTK-NGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDS 220

Query: 269 AQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYS 328
           A   F K+P  +VVSW  M+ G+A  GR+  AR LF+EMP +++V+ NAM+G YVR    
Sbjct: 221 AWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQI 280

Query: 329 MKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVA 388
             A ++F  M        D  S   +++   ++G + +   I   +     +       A
Sbjct: 281 DDAYKLFMEMP-----EKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQ----TA 331

Query: 389 LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD 448
           +I+ Y + G ++ A ++F QI       WN+MI G A  G  + A  L  EM    +  D
Sbjct: 332 MINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEM----VCKD 387

Query: 449 DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARN-- 506
            +++  ++ A A AG + + L  F  M+     E  +  +  ++    + G    A N  
Sbjct: 388 MVSWNTMIAAYAQAGQMDKALEMFNEMQ-----ERNVVSWNSLITGYVQNGLYFEALNCF 442

Query: 507 -LIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
            L++    +P+       L A  N   LNVG
Sbjct: 443 ILMKQQGEKPDQTTIVCCLRASANLAALNVG 473



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 127/440 (28%), Positives = 221/440 (50%), Gaps = 40/440 (9%)

Query: 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDS 210
           GS +F QN  IS   R G +E A  +F KM  R+ V+YNSMI  Y K+G I +ARELFD 
Sbjct: 12  GSYVFTQNLRISQLGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDL 71

Query: 211 MPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQ 270
           MP  +RNL+SWNS++ GY      ++ A ++F++M +RD+ SW  M+    + G+++ A+
Sbjct: 72  MP--QRNLVSWNSMIAGYLH-NELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKAR 128

Query: 271 ALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSM 329
            LF+ +P K+D V    +I GYAK      A++LFDEM  ++VV+ N+++ GY +NG   
Sbjct: 129 ELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQ 188

Query: 330 KALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVAL 389
             L+ F+ M        +  S  +++     +G +D      + +     + N    V +
Sbjct: 189 LGLQFFEAMG-----ERNVVSWNLMVDGYVGVGDLDSAWMFFKKIP----TPNVVSWVTM 239

Query: 390 IDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD 449
           +  ++  G +  A  +F ++   ++  WNAMI         + A+ L MEM     E D 
Sbjct: 240 LSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMP----EKDS 295

Query: 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP--ELQHYGCMVDILGRAGHIEAARNL 507
           +++T ++N     G + +        R I  L P   +     M++   ++G ++ A  +
Sbjct: 296 VSWTAMINGYVRVGKLLQA-------REILNLMPYKNIAAQTAMINGYLQSGRMDEANEI 348

Query: 508 IEDMPMEPNDVIWRTLLSA---C-RNYENLNV-GEPVAKHLIGMDSSNSSSYVLLSNMFA 562
              + +  + V W ++++    C R  E L +  E V K ++  ++   ++Y     M  
Sbjct: 349 FSQISVR-DSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTM-IAAYAQAGQMDK 406

Query: 563 GLGMWNDARRVRSMMKERNL 582
            L M+N+       M+ERN+
Sbjct: 407 ALEMFNE-------MQERNV 419


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 207/597 (34%), Positives = 329/597 (55%), Gaps = 47/597 (7%)

Query: 30  VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNA 89
           +NQI+A+++ TG      L  KLV   S+         AR +F K+       D FLWNA
Sbjct: 91  LNQIYAKLLVTGLQYGGFLIAKLVNKASN---IGEVSCARKLFDKF----PDPDVFLWNA 143

Query: 90  IIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKV 148
           I++ YS HG     A+ M+  M    VS D FS   VLKACS L  +E G ++HG + + 
Sbjct: 144 IVRCYSRHGFF-GHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRH 202

Query: 149 AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELF 208
            F SD+F+QN L++LY +CG +  A  +F ++  R  VS+ S+I GY ++G    A  +F
Sbjct: 203 GFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIF 262

Query: 209 DSMPIRERNL----ISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV-KC 263
             M  R+ N+    I+  SVL  Y  ++                  +     +HGCV K 
Sbjct: 263 SEM--RKTNVRPDWIALVSVLRAYTDVED-----------------LEHGKSIHGCVIKM 303

Query: 264 GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV 323
           G     +  FD +         ++   YAK G V +AR  F+++    ++  NAM+ GYV
Sbjct: 304 G----LECEFDLL--------ISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYV 351

Query: 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG 383
           +NGY+ +A+E+F  M+ +  + PD  ++   ++A AQ+G ++    +  Y+   +F  + 
Sbjct: 352 KNGYAEEAIELFRLMKSK-NIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDV 410

Query: 384 KHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
               +LID Y+KCGS++ A  VF++I D  V  W+AM+ G  +HG G  +  L   M + 
Sbjct: 411 IVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQA 470

Query: 444 SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503
            + P+D+TF GLL AC ++GLV+EG   F  MR  + +EP  QHY C+VD+LGRAGH++ 
Sbjct: 471 GVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRD-YGIEPRHQHYACVVDLLGRAGHLDR 529

Query: 504 ARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563
           A N + +MP+EP   +W  LLSAC+ + ++ +GE  A+ L  +D  N+  YV LSN++A 
Sbjct: 530 AYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYAS 589

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
             +W+   +VR +M+E+ L K  G S IE+ G +  F   DK+  + ++I+  ++++
Sbjct: 590 SCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDL 646


>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
          Length = 728

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 194/583 (33%), Positives = 318/583 (54%), Gaps = 50/583 (8%)

Query: 81  KKDPFL----WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
           +++PF     W A I  +       EAL +F  +L++GV  +  + + V++AC  LG   
Sbjct: 142 ERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFG 201

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G+ I GL+ K  F   L + N LI+L +R G ++ AR++FD+M  RD VS+ +++D YV
Sbjct: 202 LGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYV 261

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPE-------- 247
           ++G++  AR +FD MP  ERN ISW++++  Y+Q  SG  + A ++F KM +        
Sbjct: 262 ETGDLREARRIFDEMP--ERNEISWSAMIARYSQ--SGYAEEALKLFSKMVQEGFKPNIS 317

Query: 248 -------------------------------RDLISWNSMLHGCVKCGKMDDAQALFDKM 276
                                          +D+   +S++    KCGK DD + +FD +
Sbjct: 318 CFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLI 377

Query: 277 PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFD 336
            +++VV W +M+ GY+  GR++    LF+ +P+++  +   ++ GY+ N    K LE+F+
Sbjct: 378 LEKNVVCWNSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFN 437

Query: 337 NMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC 396
            +       P+ ++   VL A A +  +DKG+ +H  + K     +   G AL DMY+KC
Sbjct: 438 TLLVSGQ-TPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKC 496

Query: 397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS-IEPDDITFTGL 455
           G I ++ +VFE++ + +   W  MI GLA  G    +  L  EMER S + P+++    +
Sbjct: 497 GDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSV 556

Query: 456 LNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEP 515
           L AC+H GLV +GL  F  M +++ ++P+ +HY C+VD+L R+G +  A   I  +P +P
Sbjct: 557 LFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQP 616

Query: 516 NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRS 575
               W  LLS C+ Y++  + E  AK L  +  +NS+ YVLLSN++A  G W D   +R 
Sbjct: 617 EANAWAALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRK 676

Query: 576 MMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           +M+E+ LKK  GCSW+E+   VH F+  D S  Q  +IY  L 
Sbjct: 677 LMREKGLKKSGGCSWVEVRNQVHSFYSEDGSHSQSDEIYGTLQ 719



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 135/506 (26%), Positives = 239/506 (47%), Gaps = 113/506 (22%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAF-------------------------------GSD 153
           +LK  S  GLI +G  +H  L K  F                               GSD
Sbjct: 27  LLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGSD 86

Query: 154 LFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPI 213
           L + NC+IS YV+ G L  AR LFD+M  R+ VS++++I G +K G +E +   F+  P 
Sbjct: 87  LVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPF 146

Query: 214 RERNLISWNSVLNGYAQLKSGLQF-AWQIFEKMPERDL----ISWNSMLHGC-------- 260
             +N++SW + ++G+  +++GL F A ++F ++ E  +    +++ S++  C        
Sbjct: 147 --QNVVSWTAAISGF--VRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGL 202

Query: 261 ---------------------------VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAK 293
                                      ++ G++D A+ +FD+M KRDVVSW  ++D Y +
Sbjct: 203 GMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVE 262

Query: 294 LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI 353
            G +  ARR+FDEMP+R+ ++ +AM+  Y ++GY+ +AL++F  M  E +  P+ +    
Sbjct: 263 TGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGF-KPNISCFAC 321

Query: 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
            LSA+A L  +  G+ IH ++ K     +   G +LID+Y KCG  ++   VF+ I + +
Sbjct: 322 TLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKN 381

Query: 414 VDHWNAMINGLAIHGLG-------------------------------ELAFDLLMEMER 442
           V  WN+M+ G +I+G                                 E   ++   +  
Sbjct: 382 VVCWNSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLV 441

Query: 443 LSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY--GCMVDILGRAGH 500
               P+  TF+ +L ACA    + +G+    +  +I KL  +   +    + D+  + G 
Sbjct: 442 SGQTPNKSTFSSVLCACASIASLDKGM---NVHGKIIKLGIQYDIFVGTALTDMYAKCGD 498

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSA 526
           I +++ + E MP E N++ W  ++  
Sbjct: 499 IGSSKQVFERMP-EKNEISWTVMIQG 523


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 191/528 (36%), Positives = 292/528 (55%), Gaps = 11/528 (2%)

Query: 101 KEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCL 160
           ++A+  +  ML  G   D ++   +LKA +R         +H  + K   G +  +   L
Sbjct: 25  EDAVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSL 84

Query: 161 ISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN--------IESARELFDSMP 212
           ++ Y   G    AR L  +      V +N++I G+ +           ++ AR      P
Sbjct: 85  VTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTP 144

Query: 213 IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
           +   +++S  +   G   +  G+Q   ++       DL   N+++    +C  M+ A  L
Sbjct: 145 VTYVSVLS--ACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKL 202

Query: 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
           FD M  R VVSW +++ G  +LGRVD AR LF  MP+RD V+  AM+ GYV+     +AL
Sbjct: 203 FDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREAL 262

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDM 392
           E+F  MQC   +  D+ ++V V++A AQLG ++ G  +  Y+ +    ++   G ALIDM
Sbjct: 263 EMFREMQCS-NVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDM 321

Query: 393 YSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITF 452
           YSKCGSIE A+ VF+ +       W A+I GLA++G GE A ++   M  +S  PD++TF
Sbjct: 322 YSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTF 381

Query: 453 TGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP 512
            G+L AC HAGLV +G   F  MR  + + P + HYGC++D+ GRAG I  A + I+ MP
Sbjct: 382 IGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMP 441

Query: 513 MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARR 572
           M PN  IW TLL+ACR + N  +GE V + L+ MD  NS+ Y LLSN++A    W D RR
Sbjct: 442 MTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRR 501

Query: 573 VRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +R  + E+ +KK PGCS IE+ G++HEF   D+S    ++IY  L+++
Sbjct: 502 LRHTIMEKGIKKEPGCSLIEMNGIIHEFVAGDQSHPMSKEIYCKLESI 549



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 214/442 (48%), Gaps = 30/442 (6%)

Query: 30  VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNA 89
           V  +HA ++  G  +N H+ T LV ++++                  + RE+  P +WNA
Sbjct: 62  VRAVHAHVVKFGMGRNAHVATSLVTAYAAG-------GDGAAARALLSERERDTPVVWNA 114

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR-LGLIEEGLQIHGLLRKV 148
           +I  ++      EA   F  M   G +    +   VL AC +  G +  G+Q+HG +   
Sbjct: 115 LISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGS 174

Query: 149 AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELF 208
               DL ++N L+ +Y  C  +E A +LFD M +R  VS+ S++ G  + G ++ AR+LF
Sbjct: 175 GVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLF 234

Query: 209 DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLISWNSMLHGCVKCG 264
             MP  ER+ +SW ++++GY Q  +  + A ++F +M       D  +  S++  C + G
Sbjct: 235 GRMP--ERDTVSWTAMIDGYVQ-AARFREALEMFREMQCSNVSADEFTMVSVITACAQLG 291

Query: 265 KMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
            ++  + +   M ++    D      +ID Y+K G ++ A  +F +M  RD     A++ 
Sbjct: 292 ALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIIL 351

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL-EKDQF 379
           G   NGY  +A+E+F  M   +   PD+ + + VL+A    G +DKG      + E    
Sbjct: 352 GLAVNGYGEEAIEMFHRM-IGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNI 410

Query: 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHG---LGELAFD 435
           + N  H   +ID++ + G I  A+   +Q+    +   W  ++    +HG   +GEL  +
Sbjct: 411 APNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTE 470

Query: 436 LLMEMERLSIEPDDITFTGLLN 457
            L++M     +P++ T   LL+
Sbjct: 471 RLLQM-----DPENSTVYTLLS 487


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 216/668 (32%), Positives = 346/668 (51%), Gaps = 58/668 (8%)

Query: 1   MFVSANYNQPCNSTQSTLL--LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSS 58
           M +SA      +S Q T+L  L     +L+   Q HA ++ TG   +THL TKL++ +++
Sbjct: 1   MSLSAQALALLDSVQHTILNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYAN 60

Query: 59  SPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVD 118
           + C     FA            + + F ++ +I  +S       AL  F  ML  G+  D
Sbjct: 61  NMC-----FADATLVL--DLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPD 113

Query: 119 KFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD 178
                  +KAC+ L  ++   Q+HG+     F SD F+Q+ L+ +Y++C  +  A ++FD
Sbjct: 114 NRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFD 173

Query: 179 KMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGL- 235
           +M   D VS+++++  Y + G ++ A+ LF  M     + NLISWN ++ G+    SGL 
Sbjct: 174 RMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNH--SGLY 231

Query: 236 QFAWQIFEKM------PERDLIS-------------WNSMLHG-----------CV---- 261
             A  +F  M      P+   IS                ++HG           CV    
Sbjct: 232 SEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSAL 291

Query: 262 -----KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR----DV 312
                KC    +   +FD+M   DV S    I G ++ G+V+ + RLF ++  +    +V
Sbjct: 292 IDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNV 351

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           V+  +M+    +NG  M+ALE+F  MQ    + P+  ++  +L A   +  +  G A H 
Sbjct: 352 VSWTSMIACCSQNGRDMEALELFREMQIA-GVKPNSVTIPCLLPACGNIAALMHGKAAHC 410

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
           +  +   S +   G ALIDMY+KCG I+ +   F+ I   ++  WNA+I G A+HG  + 
Sbjct: 411 FSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKE 470

Query: 433 AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV 492
           A ++   M+R   +PD I+FT +L+AC+ +GL +EG   F  M   + +E  ++HY CMV
Sbjct: 471 AMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMV 530

Query: 493 DILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552
            +L RAG +E A  +I  MP+ P+  +W  LLS+CR + N+++GE  A+ L  ++ SN  
Sbjct: 531 TLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPG 590

Query: 553 SYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRD 612
           +Y+LLSN++A  GMWN+  RVR MMK + L+K PGCSWIE++  VH     DKS  Q+  
Sbjct: 591 NYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQ 650

Query: 613 IYYMLDNM 620
           I   LD +
Sbjct: 651 IIENLDKL 658


>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
 gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
 gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 597

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 193/538 (35%), Positives = 296/538 (55%), Gaps = 45/538 (8%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFG-SDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183
           +L+ C     +++G  IH  L+   F   +  L N LI +Y++CG    A ++FD+M +R
Sbjct: 52  LLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLR 111

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQ 240
           +  S+N+M+ GYVKSG +  AR +FDSMP  ER+++SWN+++ GYAQ   L   L F  +
Sbjct: 112 NLYSWNNMVSGYVKSGMLVRARVVFDSMP--ERDVVSWNTMVIGYAQDGNLHEALWFYKE 169

Query: 241 IFEKMPERDLISWNSMLHGCVK-----------------------------------CGK 265
                 + +  S+  +L  CVK                                   CG+
Sbjct: 170 FRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQ 229

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
           M+ A+  FD+M  +D+  W  +I GYAKLG ++ A +LF EMP+++ V+  A++ GYVR 
Sbjct: 230 MESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQ 289

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
           G   +AL++F  M   L + P+  +    L A A +  +  G  IH Y+ +     N   
Sbjct: 290 GSGNRALDLFRKM-IALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIV 348

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDG-SVDHWNAMINGLAIHGLGELAFDLLMEMERLS 444
             +LIDMYSK GS+E + +VF   +D      WN MI+ LA HGLG  A  +L +M +  
Sbjct: 349 ISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFR 408

Query: 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504
           ++P+  T   +LNAC+H+GLV+EGL  FE M   H + P+ +HY C++D+LGRAG  +  
Sbjct: 409 VQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKEL 468

Query: 505 RNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL 564
              IE+MP EP+  IW  +L  CR + N  +G+  A  LI +D  +S+ Y+LLS+++A  
Sbjct: 469 MRKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYADH 528

Query: 565 GMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVR--DIYYMLDNM 620
           G W    ++R +MK+R + K    SWIE+E  V  F V D S    R  +IY++L N+
Sbjct: 529 GKWELVEKLRGVMKKRRVNKEKAVSWIEIEKKVEAFTVSDGSHAHARKEEIYFILHNL 586



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 204/392 (52%), Gaps = 40/392 (10%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   WN ++  Y+   +  EAL  +     +G+  ++FS + +L AC +   ++   Q
Sbjct: 141 ERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQ 200

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
            HG +    F S++ L   +I  Y +CG +E A++ FD+M ++D   + ++I GY K G+
Sbjct: 201 AHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGD 260

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM------PERDLISWN 254
           +E+A +LF  MP  E+N +SW +++ GY +  SG + A  +F KM      PE+   +++
Sbjct: 261 MEAAEKLFCEMP--EKNPVSWTALIAGYVRQGSGNR-ALDLFRKMIALGVKPEQ--FTFS 315

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKRDV----VSWANMIDGYAKLGRVDIARRLF---DEM 307
           S L        +   + +   M + +V    +  +++ID Y+K G ++ + R+F   D+ 
Sbjct: 316 SCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDD- 374

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
            K D V  N M+    ++G   KAL + D+M  +  + P+  +LV++L+A +  G +++G
Sbjct: 375 -KHDCVFWNTMISALAQHGLGHKALRMLDDM-IKFRVQPNRTTLVVILNACSHSGLVEEG 432

Query: 368 VAIHRYLEKDQFSLNGKHGVA--------LIDMYSKCGSIENAIKVFEQIEDGSVDH-WN 418
           +   R+ E    S+  +HG+         LID+  + G  +  ++  E++      H WN
Sbjct: 433 L---RWFE----SMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWN 485

Query: 419 AMINGLAIHG---LGELAFDLLMEMERLSIEP 447
           A++    IHG   LG+ A D L++++  S  P
Sbjct: 486 AILGVCRIHGNEELGKKAADELIKLDPESSAP 517



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 94/429 (21%), Positives = 173/429 (40%), Gaps = 81/429 (18%)

Query: 23  KCKTLNDVNQIHARMITTGFIKNTHLTTKLVASF-------SSSPC-------------T 62
           K + L    Q H +++  GF+ N  L+  ++ ++       S+  C             T
Sbjct: 191 KSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTT 250

Query: 63  PLTEFARY----IFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVD 118
            ++ +A+        K      +K+P  W A+I  Y        AL +F  M+  GV  +
Sbjct: 251 LISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPE 310

Query: 119 KFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLF- 177
           +F+ S  L A + +  +  G +IHG + +     +  + + LI +Y + G LE + ++F 
Sbjct: 311 QFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFR 370

Query: 178 ---DKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG 234
              DK    D V +N+MI    + G    A  + D M                       
Sbjct: 371 ICDDK---HDCVFWNTMISALAQHGLGHKALRMLDDM----------------------- 404

Query: 235 LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR-----DVVSWANMID 289
           ++F  Q     P R  +    +L+ C   G +++    F+ M  +     D   +A +ID
Sbjct: 405 IKFRVQ-----PNRTTLV--VILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLID 457

Query: 290 GYAKLGRVDIARRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD 348
              + G      R  +EMP + D    NA++G    +G      +  D +   + L P+ 
Sbjct: 458 LLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAADEL---IKLDPES 514

Query: 349 ASLVIVLSAI-AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFE 407
           ++  I+LS+I A  G  +    +   ++K +  +N +  V+ I+       IE  ++ F 
Sbjct: 515 SAPYILLSSIYADHGKWELVEKLRGVMKKRR--VNKEKAVSWIE-------IEKKVEAF- 564

Query: 408 QIEDGSVDH 416
            + DGS  H
Sbjct: 565 TVSDGSHAH 573


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 191/583 (32%), Positives = 322/583 (55%), Gaps = 49/583 (8%)

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           DP  W AII  Y+       A+ MF  M+   V   +F+ S VL +C+    ++ G +IH
Sbjct: 106 DPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIH 165

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
             + K+  GS + +   L+++Y +CG    A+ +FD+M +++  ++N++I  Y++SG  E
Sbjct: 166 SFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFE 225

Query: 203 SARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM---P--ERDLISWNSML 257
            A   F+ MP  +R+++SWNS+++GY+Q    L+ A  IF KM   P  + D  +  S+L
Sbjct: 226 LAASQFEKMP--DRDIVSWNSMISGYSQQGYNLE-ALAIFSKMLNEPSLKPDNFTLASIL 282

Query: 258 HGCVKCGKMDDAQALF-------------------------------------DKMPKRD 280
             C    K++  + +                                      ++    +
Sbjct: 283 SACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLN 342

Query: 281 VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQC 340
           ++++ +++DGY KLG V  AR +F+++  RDVVA  AM+ GYV+NG    ALE+F  M  
Sbjct: 343 IIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVN 402

Query: 341 ELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE 400
           E    P+  +L  +LS  + L  ++ G  IH    K   S       ALI MY+K G+I 
Sbjct: 403 E-GPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNIN 461

Query: 401 NAIKVFEQIEDGS--VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
            A +VF+ + +G   +  W +MI  LA HGLG+ A +L   M  + ++PD IT+ G+L+A
Sbjct: 462 VAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSA 520

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
           C H GLV++G   + +M  +H++EP L HY CM+D+ GRAG ++ A   IE MP+EP+++
Sbjct: 521 CTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNI 580

Query: 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578
            W +LL++C+ ++N ++ +  A+ L+ +D  NS +Y+ L+N+++  G W +A + R +MK
Sbjct: 581 AWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMK 640

Query: 579 ERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMW 621
           +R ++K  G SWI ++  VH F V D    Q  +IY ++  +W
Sbjct: 641 DRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIW 683



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 134/532 (25%), Positives = 242/532 (45%), Gaps = 85/532 (15%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +L+   R+     G  +H  + K      ++L N L++ Y + G L FA  +FD+M ++ 
Sbjct: 16  ILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKS 75

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQL----KSGLQFAWQ 240
           + S+N++I GY K GN E +R L   MP  + + +SW +++ GY Q      +   FA  
Sbjct: 76  TFSWNTLISGYAKQGNFEVSRRLLYEMP--DCDPVSWTAIIVGYNQFGLFDNAIWMFAKM 133

Query: 241 IFEKMPERDLISWN----------------------------------SMLHGCVKCGKM 266
           I E++P       N                                  S+L+   KCG  
Sbjct: 134 ISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDP 193

Query: 267 DDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNG 326
             A+ +FD+M  +++ +W  +I  Y + G+ ++A   F++MP RD+V+ N+M+ GY + G
Sbjct: 194 VIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQG 253

Query: 327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG 386
           Y+++AL IF  M  E  L PD+ +L  +LSA A L  ++ G  IH Y+ + +   +G  G
Sbjct: 254 YNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVG 313

Query: 387 VALIDMYSKCGSIE---------------------------------NAIKVFEQIEDGS 413
            ALI MY+K G +E                                  A ++F ++ D  
Sbjct: 314 NALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRD 373

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG-LLCF 472
           V  W AMI G   +GL   A +L   M     EP+  T   +L+  +   +++ G  +  
Sbjct: 374 VVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHA 433

Query: 473 ELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSACRNY- 530
             ++      P + +   ++ +  + G+I  A+ +  D+P    +++ W +++ A   + 
Sbjct: 434 SAIKAGESSTPSVTN--ALIAMYAKTGNINVAKRVF-DLPNGKKEIVSWTSMIMALAQHG 490

Query: 531 ---ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579
              E +N+ E +    +GM   +  +YV + +    +G+    R+  +MM E
Sbjct: 491 LGKEAINLFERMLS--VGMK-PDHITYVGVLSACTHVGLVEQGRKYYNMMTE 539



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 195/371 (52%), Gaps = 28/371 (7%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDN-GVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +D   WN++I  YS      EAL +F  ML+   +  D F+ + +L AC+ L  +  G Q
Sbjct: 237 RDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQ 296

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD--KMGIRDSVSYNSMIDGYVKS 198
           IH  + +    +   + N LIS+Y + G +E AR + +  +    + +++ S++DGY K 
Sbjct: 297 IHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKL 356

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKM----PERDLISW 253
           GN++ ARE+F+ +  R+R++++W +++ GY Q  +GL   A ++F  M    PE +  + 
Sbjct: 357 GNVKPAREIFNKL--RDRDVVAWTAMIVGYVQ--NGLWNDALELFRLMVNEGPEPNSYTL 412

Query: 254 NSMLH-----GCVKCGKMDDAQALFDKMPKRDVVSWAN-MIDGYAKLGRVDIARRLFDEM 307
            +ML        ++ GK   A A+  K  +    S  N +I  YAK G +++A+R+FD +
Sbjct: 413 AAMLSVSSSLTILEHGKQIHASAI--KAGESSTPSVTNALIAMYAKTGNINVAKRVFD-L 469

Query: 308 P--KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
           P  K+++V+  +M+    ++G   +A+ +F+ M   + + PD  + V VLSA   +G ++
Sbjct: 470 PNGKKEIVSWTSMIMALAQHGLGKEAINLFERM-LSVGMKPDHITYVGVLSACTHVGLVE 528

Query: 366 KGVAIHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ--IEDGSVDHWNAMIN 422
           +G   +  + E  +      H   +ID+Y + G ++ A    E   IE  ++  W +++ 
Sbjct: 529 QGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIA-WGSLLA 587

Query: 423 GLAIHGLGELA 433
              IH   +LA
Sbjct: 588 SCKIHKNADLA 598



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 145/354 (40%), Gaps = 78/354 (22%)

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           AR IF K       +D   W A+I  Y       +AL +F LM++ G   + ++ + +L 
Sbjct: 362 AREIFNKL----RDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLS 417

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD-KMGIRDSV 186
             S L ++E G QIH    K    S   + N LI++Y + G +  A+++FD   G ++ V
Sbjct: 418 VSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIV 477

Query: 187 SYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP 246
           S+ SMI    + G  + A  LF+ M                   L  G++          
Sbjct: 478 SWTSMIMALAQHGLGKEAINLFERM-------------------LSVGMK---------- 508

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS-----WANMIDGYAKLGRVDIAR 301
             D I++  +L  C   G ++  +  ++ M +   +      +A MID Y + G +  A 
Sbjct: 509 -PDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAY 567

Query: 302 RLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
              + MP + D +A  +++                    C+++ + D A +     A  +
Sbjct: 568 LFIESMPIEPDNIAWGSLLA------------------SCKIHKNADLAKV-----AAER 604

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
           L  ID G              N    +AL ++YS CG  ENA +  + ++D  V
Sbjct: 605 LLLIDPG--------------NSGAYLALANVYSACGKWENAAQTRKLMKDRGV 644



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 16/183 (8%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           S  S+L +L   K      QIHA  I  G      +T  L+A ++    T     A+ +F
Sbjct: 417 SVSSSLTILEHGK------QIHASAIKAGESSTPSVTNALIAMYAK---TGNINVAKRVF 467

Query: 73  FKYHAFREKKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
              +    KK+   W ++I   + HGL  KEA+ +F  ML  G+  D  +   VL AC+ 
Sbjct: 468 DLPNG---KKEIVSWTSMIMALAQHGLG-KEAINLFERMLSVGMKPDHITYVGVLSACTH 523

Query: 132 LGLIEEGLQIHGLLRKV-AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYN 189
           +GL+E+G + + ++ +V      L    C+I LY R G L+ A    + M I  D++++ 
Sbjct: 524 VGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWG 583

Query: 190 SMI 192
           S++
Sbjct: 584 SLL 586


>gi|115477124|ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
 gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|42407750|dbj|BAD08896.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113624127|dbj|BAF24072.1| Os08g0500600 [Oryza sativa Japonica Group]
          Length = 429

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 175/458 (38%), Positives = 273/458 (59%), Gaps = 46/458 (10%)

Query: 141 IHGLLRKVA-----FGS-----DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
           ++G LR  A     FGS     D+   N +I  YV+CG +E A+++FD+M  R+ VS+++
Sbjct: 1   MYGALRDAASMREVFGSCAGVADVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWST 60

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL 250
           M+ GY  +G ++ ARE+FD MP   RN+++WNS++ G+A+    L  A ++F++MP R+L
Sbjct: 61  MVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTGFAR-HGLLPLARKMFDEMPVRNL 119

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
           +SWN+ML G      MD A+ LFD MP++DVVSW  MI GYA+ GR              
Sbjct: 120 VSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQ------------ 167

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
                                LE+F  MQ E  + P++ ++V VLSA A L  +++G  +
Sbjct: 168 -------------------DTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWV 208

Query: 371 HRYLEKDQFSLNGKH--GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
           H +++K +  LN ++  G ALIDMY+KCG  + A+K+F  ++  +V  WNA+I  LA++G
Sbjct: 209 HAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNG 268

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
               + D   +M+R   +P+DITF G+L AC+H GLV EG  CF+ M     ++PE++HY
Sbjct: 269 NARDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHY 328

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK--HLIGM 546
           GCMVD+LGRAG +E A  LI  MPM P+ +++  LL ACR ++  +V E V    H + +
Sbjct: 329 GCMVDMLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEIHSLNL 388

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKK 584
           ++  S  +VL+S+++A  G W D    R +++   ++K
Sbjct: 389 NAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRK 426



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 111/239 (46%), Gaps = 14/239 (5%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMF-CLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           +KD   W  +I  Y+     ++ L +F  +  ++ V  ++ +   VL AC+ L  +EEG 
Sbjct: 147 EKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGR 206

Query: 140 QIHGLL--RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
            +H  +   K+   ++  L   LI +Y +CG  + A ++F+ +  ++  ++N++I     
Sbjct: 207 WVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAM 266

Query: 198 SGNIESARELFDSMPI--RERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLISWN 254
           +GN   + + F+ M     + N I++  VL   +    GL     + F+ M     +   
Sbjct: 267 NGNARDSVDAFEQMKRTGEKPNDITFVGVLTACSH--GGLVDEGRRCFQSMASTCGVQPE 324

Query: 255 SMLHGCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
              +GC+     + G +++A+ L   MP   DV+ +  ++       R D+A R+  E+
Sbjct: 325 VKHYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEI 383


>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
          Length = 768

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 195/543 (35%), Positives = 292/543 (53%), Gaps = 38/543 (6%)

Query: 81  KKDPFLWNAIIKTYSHGLDP-KEALVMFCLMLDNG-VSVDKFSASLVLKACSRLGLIEEG 138
           ++D   W  +I  +S   D   +AL MF LM+ +G  + ++F+   V++AC RLG++  G
Sbjct: 232 RRDVVAWTTLISGFSKNGDGCGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVG 291

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
             +HGLL K     D  +   L+  Y  C  ++ A ++   +      + NS+I+G +  
Sbjct: 292 RTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISM 351

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLH 258
           G IE A EL                                 +F  M E + +S+N M+ 
Sbjct: 352 GRIEDA-EL---------------------------------VFNGMTEMNPVSYNLMIK 377

Query: 259 GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP-KRDVVACNA 317
           G    G+MDD++ LF+KMP R + S   MI  Y++ G +D A  LF+E   ++D V  N+
Sbjct: 378 GYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTWNS 437

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           M+ GY+ +G   +AL+++  M   L +    ++   +  A + LG + +G  +H +L K 
Sbjct: 438 MISGYIHSGQPEEALKLYITMH-RLSIQQTRSTFSALFHACSCLGSLQQGQLLHAHLIKT 496

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLL 437
            F  N   G +LIDMYSKCGSI  A   F  I   +V  W A+ING A HGLG  A  L 
Sbjct: 497 PFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLF 556

Query: 438 MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
             M    + P+  TF G+L+AC+ AGLV EG+  F  M R + + P L+HY C+VD+LGR
Sbjct: 557 DXMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGR 616

Query: 498 AGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557
           +GHI  A   I+ MP+E + V+W  LLSAC  + +L VGE VA+ +   D    SSYV+L
Sbjct: 617 SGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLEVGERVAEKMFSFDPKPISSYVIL 676

Query: 558 SNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           SN++AGLG W +   VR +++   +KK PGCSWIEL   +H F + D+S      IY  L
Sbjct: 677 SNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIELNNKIHVFSIEDRSHPYCNMIYATL 736

Query: 618 DNM 620
           +++
Sbjct: 737 EHL 739



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 115/416 (27%), Positives = 183/416 (43%), Gaps = 85/416 (20%)

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
           S++   N  IS Y +   L+ ARQLFD+M  R  VS+N+MI  Y K G    A  L  SM
Sbjct: 70  SEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSM 129

Query: 212 PIRERNL--ISWNSVLNGYAQ--------------LKSG-----------LQF------- 237
                 L   +++SVL+  A+              LKSG           L F       
Sbjct: 130 HRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEI 189

Query: 238 --AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG 295
             A ++F+ +  R+ + W+ ML G V C  MDDA ++F KMP+RDVV+W  +I G++K G
Sbjct: 190 GEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNG 249

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
                              C              KALE+F  M       P++ +   V+
Sbjct: 250 D-----------------GCG-------------KALEMFRLMMRSGETTPNEFTFDCVV 279

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
            A  +LG +  G  +H  L K     +   G AL++ Y +C +I++A++V + + +  ++
Sbjct: 280 RACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLN 339

Query: 416 HWNAMINGLAIHGL---GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCF 472
             N++I GL   G     EL F+ + EM       + +++  ++   A  G + +    F
Sbjct: 340 ALNSLIEGLISMGRIEDAELVFNGMTEM-------NPVSYNLMIKGYAVGGQMDDSKRLF 392

Query: 473 ELM--RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           E M  R I            M+ +  R G I+ A  L E+   E + V W +++S 
Sbjct: 393 EKMPCRTIFS-------SNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISG 441



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 149/338 (44%), Gaps = 43/338 (12%)

Query: 280 DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQ 339
           +++S    I  YAK  ++D+AR+LFD+MP+R VV+ N M+  Y ++G   +AL +  +M 
Sbjct: 71  EIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMH 130

Query: 340 CELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK---DQFSLNGKHGVALIDMYSKC 396
              ++   +++   VLS  A+L  +  G  IH  + K   + F L G    AL+  Y+ C
Sbjct: 131 -RSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGS---ALLYFYASC 186

Query: 397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLL 456
             I  A +VF+ +   +   W+ M+ G     + + A  + ++M R     D + +T L+
Sbjct: 187 FEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPR----RDVVAWTTLI 242

Query: 457 NACAHAG-LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARN---LIEDMP 512
           +  +  G    + L  F LM R  +  P    + C+V   GR G +   R    L+    
Sbjct: 243 SGFSKNGDGCGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCG 302

Query: 513 MEPNDVIWRTL-------------LSACRNYEN--LNVGEPVAKHLI------------- 544
           +E +  I   L             L  C+   N  LN    + + LI             
Sbjct: 303 LEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFN 362

Query: 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
           GM   N  SY L+   +A  G  +D++R+   M  R +
Sbjct: 363 GMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTI 400


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 198/612 (32%), Positives = 326/612 (53%), Gaps = 70/612 (11%)

Query: 10  PCNSTQSTLL-LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFA 68
           P  S ++  + L+    TL  ++QIHA++       N+ + T+L+   SSS      ++A
Sbjct: 35  PSRSPETHFIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLI---SSSCSLKSLDYA 91

Query: 69  RYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA 128
             IF  +    +  + F++NA+I+  +     + ++  F LML   +  D+ +   VLK+
Sbjct: 92  LSIFRCF----DHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKS 147

Query: 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY 188
            + L  +  G  +HG + K+                     LEF           DS   
Sbjct: 148 VAALVDVGLGRCLHGGVMKLG--------------------LEF-----------DSFVR 176

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER 248
            S++D YVK G +    +LFD  P  +RN                               
Sbjct: 177 VSLVDMYVKIGELGFGLQLFDESP--QRN----------------------------KAE 206

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
            ++ WN +++GC K G +  A +LF+ MP+R+  SW ++I+G+ + G +D AR LF +MP
Sbjct: 207 SILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMP 266

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
           +++VV+   M+ G+ +NG   KAL +F  M  E  + P+D ++V  L A  ++G +  G 
Sbjct: 267 EKNVVSWTTMINGFSQNGDHEKALSMFWRM-LEEGVRPNDLTVVSALLACTKIGALQVGE 325

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            IH YL  + F LN   G AL+DMY+KCG+I++A +VF + +   +  W+ MI G AIHG
Sbjct: 326 RIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHG 385

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
             + A    ++M+   I PD++ F  +L AC+H+G V +GL  FE MR  + +EP ++HY
Sbjct: 386 CFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHY 445

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
             +VD+LGRAG ++ A + I+ MP+ P+ VIW  L  ACR ++N+ + E  A+ L+ ++ 
Sbjct: 446 TLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEP 505

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
            +  SYV LSN++A +G W D  RVR++MK R ++K PG S+IE+EG VH F   D + +
Sbjct: 506 KHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHV 565

Query: 609 QVRDIYYMLDNM 620
           +  +I   L+ +
Sbjct: 566 RAEEISLKLEEI 577


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 170/447 (38%), Positives = 272/447 (60%), Gaps = 4/447 (0%)

Query: 168 GYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNG 227
           G L+ A++LF K+   D+VSYN+M+  YV++ N+E A+  F+ MPI++    SWN+++ G
Sbjct: 21  GKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTP--SWNTMITG 78

Query: 228 YAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANM 287
           +AQ +  +  A  +F  MP +++++WN+M+ G V+CG +D A  LF+K P + VV+W  M
Sbjct: 79  FAQNQQ-MDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSALKLFEKAPFKSVVAWTAM 137

Query: 288 IDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD 347
           I GY KLGR+ +A RLF++MP++++V  NAM+ GY+ N  +   +++F  M     + P+
Sbjct: 138 ITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTM-VGFGIQPN 196

Query: 348 DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFE 407
            ++L   L   ++L  +  G  +H+ + K     +   G +LI MY KCG +E+  K+F 
Sbjct: 197 SSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFV 256

Query: 408 QIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKE 467
           Q+    V  WNAMI+G A HG G+ A  L  EM    ++PD ITF  +L AC HAG    
Sbjct: 257 QVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDL 316

Query: 468 GLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSAC 527
           G+  F  M + + L  +  HY CMVD+LGRAG +  A +LIE MP +P+  ++ TLL AC
Sbjct: 317 GVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGAC 376

Query: 528 RNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPG 587
           R ++N  + E  ++ L+ +D ++++ YV L+N++A    W+   RVR  MK   + K PG
Sbjct: 377 RIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATKRWDHVARVRKSMKSCKVVKTPG 436

Query: 588 CSWIELEGVVHEFFVRDKSRLQVRDIY 614
            SWIE++ + H+F   DK   ++  I+
Sbjct: 437 YSWIEVKSMAHQFRSGDKFHPELASIH 463



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 127/266 (47%), Gaps = 47/266 (17%)

Query: 216 RNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK 275
           +  ++WNSVL G ++ +  L+ A ++F K+PE D +S+N+ML   V+   M+ AQA F+ 
Sbjct: 4   KTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFED 63

Query: 276 MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
           MP +D  SW  MI G+A+  ++D AR LF  MP ++VV  NAM+ GYV  G    AL++F
Sbjct: 64  MPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSALKLF 123

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
           +    +              S +A                            A+I  Y K
Sbjct: 124 EKAPFK--------------SVVAW--------------------------TAMITGYMK 143

Query: 396 CGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGL 455
            G I  A ++FE++ + ++  WNAMI G   +   E    L   M    I+P+  T +  
Sbjct: 144 LGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSA 203

Query: 456 LNACAHAGLVKEGLLCFELMRRIHKL 481
           L  C+        L   +L R++H+L
Sbjct: 204 LLGCSE-------LSALQLGRQVHQL 222



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 127/292 (43%), Gaps = 75/292 (25%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN 217
           N +IS YV CG L+ A +LF+K   +  V++ +MI GY+K G I  A  LF+ MP  E+N
Sbjct: 104 NAMISGYVECGDLDSALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMP--EKN 161

Query: 218 LISWNSVLNGYAQLK----------------------------------SGLQFAWQIFE 243
           L++WN+++ GY +                                    S LQ   Q+ +
Sbjct: 162 LVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQ 221

Query: 244 ---KMPE-RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDI 299
              K P   D  +  S++    KCG ++D   LF ++P+RDVV+W  MI GYA+ G    
Sbjct: 222 LVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKK 281

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           A  LFDEM ++                                 + PD  + V VL A  
Sbjct: 282 ALGLFDEMIEKG--------------------------------MKPDWITFVAVLMACN 309

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGK--HGVALIDMYSKCGSIENAIKVFEQI 409
             G  D GV     + KD + L  K  H   ++D+  + G +  A+ + E++
Sbjct: 310 HAGFTDLGVKYFHSMAKD-YGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKM 360



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 107/249 (42%), Gaps = 35/249 (14%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +K+   WNA+I  Y      ++ + +F  M+  G+  +  + S  L  CS L  ++ G Q
Sbjct: 159 EKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQ 218

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H L+ K     D      LIS+Y +CG LE   +LF ++  RD V++N+MI GY + G 
Sbjct: 219 VHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGE 278

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
            + A  LFD M                               EK  + D I++ ++L  C
Sbjct: 279 GKKALGLFDEM------------------------------IEKGMKPDWITFVAVLMAC 308

Query: 261 VKCGKMDDAQALFDKMPK-RDVVS----WANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
              G  D     F  M K   +V+    +  M+D   + G++  A  L ++MP +   A 
Sbjct: 309 NHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAV 368

Query: 316 NAMMGGYVR 324
              + G  R
Sbjct: 369 FGTLLGACR 377


>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
 gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
          Length = 655

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 200/624 (32%), Positives = 329/624 (52%), Gaps = 15/624 (2%)

Query: 6   NYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLT 65
           N N+    T   L LL  C +   + Q+ A +  +G   +    ++L+A F +    P  
Sbjct: 23  NTNRNLVVTHPLLSLLESCASFRRLLQLQALLTVSGLAAHRFPASRLLA-FCALSDPPRL 81

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
             A  +  +     E  + ++   +++ +     P  AL +F  +L + +  D  +    
Sbjct: 82  AHAAAVLAQ---CAEGPNAYMLATMMRGFLRAGKPAHALALFRRVLRDRLPADARTIVFA 138

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAF-GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +KA +      E   IH +  K  F G  + + N L+ +Y     L  AR+LFD+M  RD
Sbjct: 139 VKAATTSSSPAEA--IHCVAFKRGFIGQSVLVGNALVHMYASSMSLPDARKLFDEMADRD 196

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPI------RERNLISWNSVLNGYAQLKSGLQFA 238
            VS+ +++DGY + G  + A  +F  M +       E  L++  S       L  G    
Sbjct: 197 VVSWTTLVDGYARGGLPDEAWRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVH 256

Query: 239 WQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVD 298
             + E      +   N+++    KCG +  A+ +FD MP +DV SW +M+  YAK G ++
Sbjct: 257 QCVVESGVRMSVNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLE 316

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
            A +LF E+P R+ V+ + M+  Y +     +A+ IF++M     + P DA+LV VLSA 
Sbjct: 317 NAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDM-IAAGVEPIDATLVSVLSAC 375

Query: 359 AQLGHIDKGVAIH-RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
           AQLG +D G  ++  Y+   +  L      A IDM++KCG +  A ++F  +ED +V  W
Sbjct: 376 AQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSW 435

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
           N MI   A+HG  E A  L  + + + I PD+IT+ G+L+AC+H+GLV EG   F+ M+ 
Sbjct: 436 NTMIVAHALHGQSEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKI 495

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
           ++ +EP  +HY CM+D+LG+ G +E A  +   MP+  ++  W  LL+ACR + N+ +G+
Sbjct: 496 VYGIEPRAEHYACMIDLLGKVGLLEEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGK 555

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVV 597
             A  L+G+D S+S  YVL+S ++A    W   + +R++M++R +KK PGCS IE++G  
Sbjct: 556 CAADKLVGLDPSDSGIYVLMSQIYASKSKWGQVKMIRTVMRDRGVKKNPGCSSIEVDGKF 615

Query: 598 HEFFVRDKSRLQVRDIYYMLDNMW 621
           HEF   D S     DIY  L+N++
Sbjct: 616 HEFLAADVSHAHSEDIYAALENIY 639


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 198/491 (40%), Positives = 289/491 (58%), Gaps = 30/491 (6%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLI---SLYVRCGYLEFARQLFDKMG 181
           VL  C  L    E  QIH  + K    +  F  + LI   SL    G L++A  +F ++ 
Sbjct: 12  VLDKCKSLC---ELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQ 68

Query: 182 IRDSVSYNSMIDGYVKSGN-IES----ARELFDSMPIRERNLISWNSVLNGYAQL---KS 233
             +S  + ++I G+  + N +ES    AR +   +        S  SVL    +L     
Sbjct: 69  HPNSFIFFALIKGFSDTSNPVESLILYAR-MLSCLNYSSGVEFSIPSVLKACGKLLAFDE 127

Query: 234 GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAK 293
           G Q   Q+ +     D    NSM+   +  G+++ A+ +FD+MP RDVVSW +MI GY K
Sbjct: 128 GRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLK 187

Query: 294 LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI 353
            G +++A  LFDEMP+RD+V+CNAM+ GY +   S             L L PD  ++V 
Sbjct: 188 AGEIELASELFDEMPERDLVSCNAMIDGYGKEMLS-------------LGLRPDGPAIVS 234

Query: 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLN-GKHGVALIDMYSKCGSIENAIKVFEQIEDG 412
           VLSAIA LG +++G  +H Y+  ++  L+ G  G ALIDMYSKCG IENA  VF  I   
Sbjct: 235 VLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHR 294

Query: 413 -SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC 471
            ++  WN+MI+GLAIHGL   A D+ +EMER+ IEP++ITF GLL+ C+H GLV+EG   
Sbjct: 295 RNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFY 354

Query: 472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYE 531
           FE M   +K+ P +QHYGCM+D+ GRAG +E A  +I++MP E + + W+ +LSA   + 
Sbjct: 355 FESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHG 414

Query: 532 NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           ++ +G+  A   I +   +SSSYVLLSN++A  G W+D  ++R MM++R +KK+ GCS +
Sbjct: 415 HIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSM 474

Query: 592 ELEGVVHEFFV 602
            + G VHEF +
Sbjct: 475 LVNGKVHEFLL 485



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 136/463 (29%), Positives = 246/463 (53%), Gaps = 31/463 (6%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           ST   + +L KCK+L ++ QIHA+MI T  + +    ++L+A  S S  +   ++A  +F
Sbjct: 5   STNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVF 64

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLD--NGVSVDKFSASLVLKACS 130
            +     +  + F++ A+IK +S   +P E+L+++  ML   N  S  +FS   VLKAC 
Sbjct: 65  SRI----QHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACG 120

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
           +L   +EG Q+HG + K     D F+ N ++ +Y+  G +E AR++FD+M  RD VS+NS
Sbjct: 121 KLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNS 180

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ--LKSGLQ----FAWQIFEK 244
           MI GY+K+G IE A ELFD MP  ER+L+S N++++GY +  L  GL+        +   
Sbjct: 181 MIAGYLKAGEIELASELFDEMP--ERDLVSCNAMIDGYGKEMLSLGLRPDGPAIVSVLSA 238

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
           + +   +     LH  V   K++ +               + +ID Y+K G ++ A  +F
Sbjct: 239 IADLGFVEEGKWLHAYVSMNKIELSSGFIG----------SALIDMYSKCGYIENAYHVF 288

Query: 305 DEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
             +  +R++   N+M+ G   +G + +AL+IF  M+  + + P++ + + +LS  +  G 
Sbjct: 289 RSISHRRNIGDWNSMISGLAIHGLAREALDIFVEME-RMDIEPNEITFLGLLSTCSHGGL 347

Query: 364 IDKGVAIHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMI 421
           +++G      + EK +     +H   +ID++ + G +E+A+ V + +  +  +  W A++
Sbjct: 348 VEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAIL 407

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDD-ITFTGLLNACAHAG 463
           +    HG  E+       +  + + PDD  ++  L N  A AG
Sbjct: 408 SASMKHGHIEIGKS--AALRAIELAPDDSSSYVLLSNIYAKAG 448


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 207/609 (33%), Positives = 322/609 (52%), Gaps = 47/609 (7%)

Query: 20  LLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           LL  C ++ D+N   Q+H+ ++  G   +  +   L+  +    C  + E A  IF    
Sbjct: 250 LLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVK--CGVIVE-ALEIFKS-- 304

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
              ++ +  LWN ++  Y    D  ++  +FC M+  GV  ++F+   +L+ C+  G I 
Sbjct: 305 --GDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEIN 362

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G QIH L  K  F SD+++   LI +Y + G+L+ AR++ + +  +D VS+ SMI GYV
Sbjct: 363 LGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYV 422

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
           +    + A E F  M                            Q+F   P  D I   S 
Sbjct: 423 QHEFCKEALETFKDM----------------------------QLFGIWP--DNIGLASA 452

Query: 257 LHGCVKCGKMDDAQALFDKMP----KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
           +  C     M   Q +  ++       DV  W  +++ YA+ GR   A  LF+ +  +D 
Sbjct: 453 ISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDK 512

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           +  N M+ G+ ++G   +ALE+F  M  +  +  +  + V  +SA A L  I +G  IH 
Sbjct: 513 ITWNGMVSGFAQSGLYEEALEVFIKMY-QAGVKYNVFTFVSSISASANLADIKQGKQIHA 571

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENA-IKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
            + K   +   +   ALI +Y KCGSIE+A ++ FE  E   V  WN +I   + HG G 
Sbjct: 572 TVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVS-WNTIITSCSQHGWGL 630

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            A DL  +M++  ++P+D+TF G+L AC+H GLV+EGL  F+ M   H + P   HY C+
Sbjct: 631 EALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACV 690

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551
           VDILGRAG ++ AR  +E+MP+  N ++WRTLLSACR ++N+ +GE  AK+L+ ++  +S
Sbjct: 691 VDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDS 750

Query: 552 SSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVR 611
           +SYVLLSN +A  G W     VR MMK+R ++K PG SWIE++ VVH FFV D+      
Sbjct: 751 ASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAH 810

Query: 612 DIYYMLDNM 620
            IY  L ++
Sbjct: 811 QIYKYLADL 819



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 129/516 (25%), Positives = 229/516 (44%), Gaps = 52/516 (10%)

Query: 21  LRKC----KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           LR+C    K    V  IHA+ IT G  ++      L+  ++      L + AR +F +  
Sbjct: 48  LRECRGSVKHWPLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKG---LVQRARRVFEQLS 104

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
           A    +D   W A++  Y+     +EA+ ++  M  +GV    +  S VL AC++  L E
Sbjct: 105 A----RDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFE 160

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           +G  +H  + K    S+  + N LI+LY+R G L  A ++F +M   D V++N++I  + 
Sbjct: 161 QGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHA 220

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
           + GN ESA E+F+ M      L  W                           D ++  S+
Sbjct: 221 QCGNGESALEIFEEM-----RLSGWTP-------------------------DCVTIASL 250

Query: 257 LHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
           L  C   G ++  + L   + K     D +   +++D Y K G +  A  +F    + +V
Sbjct: 251 LAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNV 310

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           V  N M+  Y +     K+ ++F  M     + P++ +   +L      G I+ G  IH 
Sbjct: 311 VLWNLMLVAYGQISDLAKSFDLFCQM-VAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHL 369

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
              K  F  +      LIDMYSK G ++ A ++ E +E   V  W +MI G   H   + 
Sbjct: 370 LSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKE 429

Query: 433 AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH--KLEPELQHYGC 490
           A +   +M+   I PD+I     ++ACA    +++G    ++  R++      ++  +  
Sbjct: 430 ALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQ---QIHSRVYVSGYSADVSIWNA 486

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           +V++  R G  + A +L E +    + + W  ++S 
Sbjct: 487 LVNLYARCGRSKEAFSLFEAIE-HKDKITWNGMVSG 521


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 215/715 (30%), Positives = 349/715 (48%), Gaps = 109/715 (15%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFI--KNTHLTTKLVASFSSSPCTPLTEFARY 70
           +  S+  LL  CKTL ++ Q+H  M+  G +  K      KL+AS          ++AR 
Sbjct: 24  TRNSSSKLLVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARN 83

Query: 71  IFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS 130
            F            F++N +I+ Y+      +A++++  ML  G+  DK++   +L ACS
Sbjct: 84  AFGDDDG--NMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACS 141

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
           ++  + EG+Q+HG + K+    D+F+ N LI  Y  CG ++  R+LFD M  R+ VS+ S
Sbjct: 142 KILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTS 201

Query: 191 MIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKS--------------G 234
           +I+GY      + A  LF  M     E N ++   V++  A+LK               G
Sbjct: 202 LINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELG 261

Query: 235 LQF--------------------AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFD 274
           ++                     A QIF++   ++L+ +N+++   V      D   + D
Sbjct: 262 MELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILD 321

Query: 275 KM----PKRDVVSWANMIDGYAKLGRVDIAR----------------------------- 301
           +M    P+ D V+  + I   A+LG + + +                             
Sbjct: 322 EMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCG 381

Query: 302 ------RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM----------------- 338
                 ++F+ MP + VV  N+++ G VR+G    A  IFD M                 
Sbjct: 382 KREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQ 441

Query: 339 ------QCELY-------LHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
                   EL+       +  D  ++V + SA   LG +D    +  Y+EK+   ++ + 
Sbjct: 442 VSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQL 501

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
           G AL+DM+S+CG   +A+ VF+++E   V  W A I  +A+ G  E A +L  EM    +
Sbjct: 502 GTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKV 561

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR 505
           +PDD+ F  LL AC+H G V +G   F  M + H + P + HYGCMVD+LGRAG +E A 
Sbjct: 562 KPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAV 621

Query: 506 NLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565
           +LI+ MP+EPNDV+W +LL+ACR ++N+ +    A+ L  +       +VLLSN++A  G
Sbjct: 622 DLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAG 681

Query: 566 MWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            W D  RVR  MKE+ ++K+PG S IE++G++HEF   D+S  +   I  ML+ +
Sbjct: 682 KWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLEEI 736


>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1288

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 191/526 (36%), Positives = 301/526 (57%), Gaps = 15/526 (2%)

Query: 78   FREKKDPFL--WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
            FR+   P L  WN +I+ +S    P EA+  + LM    +  +  +   +LKAC+R+  +
Sbjct: 753  FRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFGNNLTYPFLLKACARISNV 812

Query: 136  EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
                 +H  + K+ F SDLF+ N LI  Y     L FAR++FD+M  RD VS+NS+I GY
Sbjct: 813  S-CTTVHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGY 871

Query: 196  VKSGNIESARELFDSMPIRERN--------LISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
             +         +F+ M + +          ++   +VL  +  + + +++   I E   E
Sbjct: 872  GRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEY---IEENKVE 928

Query: 248  RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
             D+   N+++    +   +D A+ +FD+M  R++VSW  MI GY K G +  AR+LFD+M
Sbjct: 929  VDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDM 988

Query: 308  PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
            P RDV++  +M+  Y + G   KA+ +F  M     + PD+ ++  VLSA A +G +D G
Sbjct: 989  PHRDVISWTSMISSYSQAGQFGKAVRLFQEMMV-TKVKPDEITVASVLSACAHIGALDVG 1047

Query: 368  VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
             A+H Y+ K   + +   G ALIDMY KCG++E  + VFE++       W ++I GLA++
Sbjct: 1048 EAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVN 1107

Query: 428  GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
            G  + A +L   M R  + P   TF G+L ACAHAG+V +GL  FE M R++ L PE++H
Sbjct: 1108 GSADSALNLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLEYFESMERVYGLTPEMKH 1167

Query: 488  YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
            YGC+VD+L R+G++  A   I+ MPM+P+ V+WR LLSA + + NL++ E   K L+  D
Sbjct: 1168 YGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQVHGNLHLAEIATKKLLETD 1227

Query: 548  SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
             SNS +Y+L SN +AG   W D  ++R +M+E N+ K    S +E+
Sbjct: 1228 PSNSGNYILSSNTYAGSNRWEDVIKMRRLMEESNVHKPSASSSVEI 1273


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 184/487 (37%), Positives = 282/487 (57%), Gaps = 6/487 (1%)

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
           LQIH +L +        L   L   Y   G L+++  LF +        + ++I G+   
Sbjct: 47  LQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALR 106

Query: 199 GNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
           G  E A   +  M  +  E N  +++S+L     ++ G     Q  +   + DL     +
Sbjct: 107 GLHEQALNFYAQMLTQGVEPNAFTFSSILK-LCPIEPGKALHSQAVKLGFDSDLYVRTGL 165

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
           L    + G +  AQ LFD MP++ +VS   M+  YAK G +D AR LFD M +RD V  N
Sbjct: 166 LDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWN 225

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
            M+ GY +NG   +AL +F  M  +    P++ +++ VLSA  QLG ++ G  +H Y+E 
Sbjct: 226 VMIDGYTQNGMPNEALVLFRRM-LKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIEN 284

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
           +    N   G AL+DMYSKCGS+E+A  VF++I+D  V  WN+MI G A+HG  + A  L
Sbjct: 285 NGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQL 344

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
              M R+ + P +ITF G+L+AC H+G V EG   F  M+  + +EP+++HYGCMV++LG
Sbjct: 345 FKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLG 404

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556
           RAGH+E A  L+++M +EP+ V+W TLL ACR +  + +GE + + L+  + +NS +Y+L
Sbjct: 405 RAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYIL 464

Query: 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYM 616
           LSN++A +G W+   R+R+MMK+  +KK PGCS IE+   VHEF     +  + ++IY M
Sbjct: 465 LSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMM 524

Query: 617 LD--NMW 621
           L+  N W
Sbjct: 525 LEEINGW 531



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 135/472 (28%), Positives = 231/472 (48%), Gaps = 58/472 (12%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           ST    +L+ K KT++ + QIHA +   G   +  L  KL  S++S          R + 
Sbjct: 29  STNRLAVLIDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYAS--------LGR-LD 79

Query: 73  FKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS 130
           +    F   ++P  F W AII  ++     ++AL  +  ML  GV  + F+ S +LK C 
Sbjct: 80  YSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP 139

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
               IE G  +H    K+ F SDL+++  L+ +Y R G +  A+QLFD M  +  VS  +
Sbjct: 140 ----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTA 195

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPE 247
           M+  Y K G +++AR LFD M   ER+ + WN +++GY Q       L    ++ +   +
Sbjct: 196 MLTCYAKHGELDAARVLFDGM--EERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAK 253

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRL 303
            + ++  S+L  C + G ++  + +   +       +V     ++D Y+K G ++ AR +
Sbjct: 254 PNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLV 313

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           FD++  +DVVA N+M+ GY  +G+S +AL++F +M C + LHP + + + +LSA    G 
Sbjct: 314 FDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSM-CRMGLHPTNITFIGILSACGHSGW 372

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           + +G  I   + KD++ +  K                             ++H+  M+N 
Sbjct: 373 VTEGWDIFNKM-KDEYGIEPK-----------------------------IEHYGCMVNL 402

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
           L   G  E A++L+  M   +IEPD + +  LL AC   G +  G    EL+
Sbjct: 403 LGRAGHVEQAYELVKNM---NIEPDPVLWGTLLGACRLHGKIALGEKIVELL 451


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 191/583 (32%), Positives = 322/583 (55%), Gaps = 49/583 (8%)

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           DP  W AII  Y+       A+ MF  M+   V   +F+ S VL +C+    ++ G +IH
Sbjct: 106 DPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIH 165

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
             + K+  GS + +   L+++Y +CG    A+ +FD+M +++  ++N++I  Y++SG  E
Sbjct: 166 SFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFE 225

Query: 203 SARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM---P--ERDLISWNSML 257
            A   F+ MP  +R+++SWNS+++GY+Q    L+ A  IF KM   P  + D  +  S+L
Sbjct: 226 LAASQFEKMP--DRDIVSWNSMISGYSQQGYNLE-ALVIFSKMLNEPSLKPDNFTLASIL 282

Query: 258 HGCVKCGKMDDAQALF-------------------------------------DKMPKRD 280
             C    K++  + +                                      ++    +
Sbjct: 283 SACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLN 342

Query: 281 VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQC 340
           ++++ +++DGY KLG V  AR +F+++  RDVVA  AM+ GYV+NG    ALE+F  M  
Sbjct: 343 IIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVN 402

Query: 341 ELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE 400
           E    P+  +L  +LS  + L  ++ G  IH    K   S       ALI MY+K G+I 
Sbjct: 403 E-GPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNIN 461

Query: 401 NAIKVFEQIEDGS--VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
            A +VF+ + +G   +  W +MI  LA HGLG+ A +L   M  + ++PD IT+ G+L+A
Sbjct: 462 VAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSA 520

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
           C H GLV++G   + +M  +H++EP L HY CM+D+ GRAG ++ A   IE MP+EP+++
Sbjct: 521 CTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNI 580

Query: 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578
            W +LL++C+ ++N ++ +  A+ L+ +D  NS +Y+ L+N+++  G W +A + R +MK
Sbjct: 581 AWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMK 640

Query: 579 ERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMW 621
           +R ++K  G SWI ++  VH F V D    Q  +IY ++  +W
Sbjct: 641 DRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIW 683



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 134/532 (25%), Positives = 242/532 (45%), Gaps = 85/532 (15%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +L+   R+     G  +H  + K      ++L N L++ Y + G L FA  +FD+M ++ 
Sbjct: 16  ILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKS 75

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQL----KSGLQFAWQ 240
           + S+N++I GY K GN E +R L   MP  + + +SW +++ GY Q      +   FA  
Sbjct: 76  TFSWNTLISGYAKQGNFEVSRRLLYEMP--DCDPVSWTAIIVGYNQFGLFDNAIWMFAKM 133

Query: 241 IFEKMPERDLISWN----------------------------------SMLHGCVKCGKM 266
           I E++P       N                                  S+L+   KCG  
Sbjct: 134 ISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDP 193

Query: 267 DDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNG 326
             A+ +FD+M  +++ +W  +I  Y + G+ ++A   F++MP RD+V+ N+M+ GY + G
Sbjct: 194 VIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQG 253

Query: 327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG 386
           Y+++AL IF  M  E  L PD+ +L  +LSA A L  ++ G  IH Y+ + +   +G  G
Sbjct: 254 YNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVG 313

Query: 387 VALIDMYSKCGSIE---------------------------------NAIKVFEQIEDGS 413
            ALI MY+K G +E                                  A ++F ++ D  
Sbjct: 314 NALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRD 373

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG-LLCF 472
           V  W AMI G   +GL   A +L   M     EP+  T   +L+  +   +++ G  +  
Sbjct: 374 VVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHA 433

Query: 473 ELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSACRNY- 530
             ++      P + +   ++ +  + G+I  A+ +  D+P    +++ W +++ A   + 
Sbjct: 434 SAIKAGESSTPSVTN--ALIAMYAKTGNINVAKRVF-DLPNGKKEIVSWTSMIMALAQHG 490

Query: 531 ---ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579
              E +N+ E +    +GM   +  +YV + +    +G+    R+  +MM E
Sbjct: 491 LGKEAINLFERMLS--VGMK-PDHITYVGVLSACTHVGLVEQGRKYYNMMTE 539



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 196/371 (52%), Gaps = 28/371 (7%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDN-GVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +D   WN++I  YS      EALV+F  ML+   +  D F+ + +L AC+ L  +  G Q
Sbjct: 237 RDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQ 296

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD--KMGIRDSVSYNSMIDGYVKS 198
           IH  + +    +   + N LIS+Y + G +E AR + +  +    + +++ S++DGY K 
Sbjct: 297 IHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKL 356

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKM----PERDLISW 253
           GN++ ARE+F+ +  R+R++++W +++ GY Q  +GL   A ++F  M    PE +  + 
Sbjct: 357 GNVKPAREIFNKL--RDRDVVAWTAMIVGYVQ--NGLWNDALELFRLMVNEGPEPNSYTL 412

Query: 254 NSMLH-----GCVKCGKMDDAQALFDKMPKRDVVSWAN-MIDGYAKLGRVDIARRLFDEM 307
            +ML        ++ GK   A A+  K  +    S  N +I  YAK G +++A+R+FD +
Sbjct: 413 AAMLSVSSSLTILEHGKQIHASAI--KAGESSTPSVTNALIAMYAKTGNINVAKRVFD-L 469

Query: 308 P--KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
           P  K+++V+  +M+    ++G   +A+ +F+ M   + + PD  + V VLSA   +G ++
Sbjct: 470 PNGKKEIVSWTSMIMALAQHGLGKEAINLFERM-LSVGMKPDHITYVGVLSACTHVGLVE 528

Query: 366 KGVAIHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ--IEDGSVDHWNAMIN 422
           +G   +  + E  +      H   +ID+Y + G ++ A    E   IE  ++  W +++ 
Sbjct: 529 QGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIA-WGSLLA 587

Query: 423 GLAIHGLGELA 433
              IH   +LA
Sbjct: 588 SCKIHKNADLA 598



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 156/344 (45%), Gaps = 38/344 (11%)

Query: 240 QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDI 299
           QI +K     +   N+++    K G +  A  +FD+MP +   SW  +I GYAK G  ++
Sbjct: 35  QIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEV 94

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           +RRL  EMP  D V+  A++ GY + G    A+ +F  M  E  + P   ++  VLS+ A
Sbjct: 95  SRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISE-RVPPSQFTVSNVLSSCA 153

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
               +D G  IH ++ K           +L++MY+KCG    A  VF+++   ++  WNA
Sbjct: 154 ANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNA 213

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           +I+     G  ELA     +M     + D +++  +++  +  G   E L+ F  M    
Sbjct: 214 LISLYMQSGQFELAASQFEKMP----DRDIVSWNSMISGYSQQGYNLEALVIFSKMLN-- 267

Query: 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPV 539
             EP L+                            P++    ++LSAC N E LN+G+ +
Sbjct: 268 --EPSLK----------------------------PDNFTLASILSACANLEKLNIGKQI 297

Query: 540 AKHLIGMDSSNSSSY-VLLSNMFAGLGMWNDARRVRSMMKERNL 582
             +++  ++  S +    L +M+A  G    AR +    +  NL
Sbjct: 298 HAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNL 341



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 145/354 (40%), Gaps = 78/354 (22%)

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           AR IF K       +D   W A+I  Y       +AL +F LM++ G   + ++ + +L 
Sbjct: 362 AREIFNKL----RDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLS 417

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD-KMGIRDSV 186
             S L ++E G QIH    K    S   + N LI++Y + G +  A+++FD   G ++ V
Sbjct: 418 VSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIV 477

Query: 187 SYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP 246
           S+ SMI    + G  + A  LF+ M                   L  G++          
Sbjct: 478 SWTSMIMALAQHGLGKEAINLFERM-------------------LSVGMK---------- 508

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS-----WANMIDGYAKLGRVDIAR 301
             D I++  +L  C   G ++  +  ++ M +   +      +A MID Y + G +  A 
Sbjct: 509 -PDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAY 567

Query: 302 RLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
              + MP + D +A  +++                    C+++ + D A +     A  +
Sbjct: 568 LFIESMPIEPDNIAWGSLLA------------------SCKIHKNADLAKV-----AAER 604

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
           L  ID G              N    +AL ++YS CG  ENA +  + ++D  V
Sbjct: 605 LLLIDPG--------------NSGAYLALANVYSACGKWENAAQTRKLMKDRGV 644



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 16/183 (8%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           S  S+L +L   K      QIHA  I  G      +T  L+A ++    T     A+ +F
Sbjct: 417 SVSSSLTILEHGK------QIHASAIKAGESSTPSVTNALIAMYAK---TGNINVAKRVF 467

Query: 73  FKYHAFREKKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
              +    KK+   W ++I   + HGL  KEA+ +F  ML  G+  D  +   VL AC+ 
Sbjct: 468 DLPNG---KKEIVSWTSMIMALAQHGLG-KEAINLFERMLSVGMKPDHITYVGVLSACTH 523

Query: 132 LGLIEEGLQIHGLLRKV-AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYN 189
           +GL+E+G + + ++ +V      L    C+I LY R G L+ A    + M I  D++++ 
Sbjct: 524 VGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWG 583

Query: 190 SMI 192
           S++
Sbjct: 584 SLL 586


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  335 bits (858), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 186/494 (37%), Positives = 286/494 (57%), Gaps = 16/494 (3%)

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYV--RCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
           IH  + +     D+F  + LI+  +      L +A ++  ++   +   YN++I G   S
Sbjct: 36  IHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLFIYNALIRGCSTS 95

Query: 199 GNIESAREL------FDSMPIRERNLISWNSVLNGYAQLKS---GLQFAWQIFEKMPERD 249
            N E++         F  +P    + I+   ++   AQL++   G+Q   Q  +   E+D
Sbjct: 96  ENPENSFHYYIKALRFGLLP----DNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQD 151

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
               NS++H     G ++ A+++F +M + DVVSW  MI GY + G    AR LFD MP+
Sbjct: 152 FYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPE 211

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           R++V  + M+ GY RN    KA+E F+ +Q E  +  ++  +V V+S+ A LG +  G  
Sbjct: 212 RNLVTWSTMISGYARNNCFEKAVETFEALQAEGVV-ANETVMVGVISSCAHLGALAMGEK 270

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
            H Y+ +++ SLN   G A++DMY++CG++E A+ VFEQ+ +  V  W A+I GLA+HG 
Sbjct: 271 AHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGY 330

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
            E A     EM +    P DITFT +L AC+HAG+V+ GL  FE M+R H +EP L+HYG
Sbjct: 331 AEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYG 390

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549
           CMVD+LGRAG +  A   +  MP++PN  IWR LL ACR ++N+ VGE V K L+ M   
Sbjct: 391 CMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQPE 450

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQ 609
            S  YVLLSN++A    W D   +R MMK++ ++K PG S IE++G VHEF + DK+  +
Sbjct: 451 YSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTIGDKTHPE 510

Query: 610 VRDIYYMLDNMWTP 623
           +  I  + +++  P
Sbjct: 511 IEKIERIWEDIILP 524



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 225/437 (51%), Gaps = 22/437 (5%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           L+LL  C    D+  IHA M+ T    +    ++L+A F     T L  +A     +  +
Sbjct: 21  LVLLECCSNARDLKIIHAHMLRTHLFFDVFAASRLIA-FCIDSTTNLLHYA----IRVAS 75

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
             +  + F++NA+I+  S   +P+ +   +   L  G+  D  +   ++KAC++L     
Sbjct: 76  QIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPM 135

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G+Q HG   K  F  D ++QN L+ +Y   G +  AR +F +M   D VS+  MI GY +
Sbjct: 136 GMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHR 195

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
            G+ +SARELFD MP  ERNL++W+++++GYA+  +  + A + FE +    +++  +++
Sbjct: 196 CGDAKSARELFDRMP--ERNLVTWSTMISGYAR-NNCFEKAVETFEALQAEGVVANETVM 252

Query: 258 HGCVKCGKMDDAQALFDKMPKR--------DVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
            G +       A A+ +K  +         +++    ++D YA+ G V+ A  +F+++P+
Sbjct: 253 VGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPE 312

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           +DV+   A++ G   +GY+ KAL  F  M  + ++ P D +   VL+A +  G +++G+ 
Sbjct: 313 KDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFV-PRDITFTAVLTACSHAGMVERGLE 371

Query: 370 IHRYLEKDQ-FSLNGKHGVALIDMYSKCGSIENAIK-VFEQIEDGSVDHWNAMINGLAIH 427
           I   +++D       +H   ++D+  + G +  A K V +     +   W A++    IH
Sbjct: 372 IFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIH 431

Query: 428 G---LGELAFDLLMEME 441
               +GE    +L+EM+
Sbjct: 432 KNVEVGERVGKILLEMQ 448


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 186/476 (39%), Positives = 284/476 (59%), Gaps = 26/476 (5%)

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE---LFDSMPIRER---NLISWNS 223
           +++AR +F +M   +   +N+++    ++ +     E   LF +M    R   N  ++ S
Sbjct: 68  IDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPS 127

Query: 224 VLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK----- 275
           VL   A+   L+ G Q    I +     D    ++++   V C  M+DA +LF K     
Sbjct: 128 VLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDF 187

Query: 276 -------MPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVR 324
                  + KR    +VV W  MIDG  +LG +  A+ LFDEMP+R VV+ N M+ GY +
Sbjct: 188 DGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQ 247

Query: 325 NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK 384
           NG+ ++A+ +F  MQ    + P+  +LV VL AIA++G ++ G  IH Y  K++  ++  
Sbjct: 248 NGHFIEAINLFQEMQSS-NIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDV 306

Query: 385 HGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS 444
            G AL+DMYSKCGSI+ A++VFE +   +   W+A+I   A+HG  E A      M +  
Sbjct: 307 LGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAG 366

Query: 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504
           + P+D+ + G+L+AC+HAGLV+EG   F  M ++  L+P ++HYGCMVD+LGRAGH+E A
Sbjct: 367 VTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEA 426

Query: 505 RNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL 564
             LI +MP+EP+DVIW+ LL AC+ ++NL +GE VA+ L+ +   +S SYV LSN++A L
Sbjct: 427 EELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASL 486

Query: 565 GMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           G W    RVR  MK  +++K PGCSWIE+ G++HEF V D S  + ++I  ML  M
Sbjct: 487 GNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEM 542



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 146/489 (29%), Positives = 247/489 (50%), Gaps = 81/489 (16%)

Query: 6   NYNQPCNSTQSTLLLLRK----CKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPC 61
           N N+  N +    L+L K    CKT  D+ Q+HA  I TG I++  LT   V  F +   
Sbjct: 7   NPNRTFNFSPQPPLILSKPFTSCKTPRDLKQLHAIFIKTGQIQDP-LTAAEVIKFCAFS- 64

Query: 62  TPLTEFARYIFFKYHAFREKKDP--FLWNAIIKTYSHGLDP---KEALVMFCLMLDNG-V 115
                 +R I +    FR+  +P  F WN I++  +   D     EAL++F  ML +G V
Sbjct: 65  ------SRDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRV 118

Query: 116 SVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQ 175
             ++F+   VLKAC+R   + EG QIHGL+ K  F  D F+ + L+ +YV C  +E A  
Sbjct: 119 KPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYS 178

Query: 176 LFDKMGIR----------------DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLI 219
           LF K  +                 + V +N MIDG V+ G+I+SA+ LFD MP  +R+++
Sbjct: 179 LFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMP--QRSVV 236

Query: 220 SWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----ISWNSMLH-----GCVKCGKMDDAQ 270
           SWN +++GYAQ    ++ A  +F++M   ++    ++  S+L      G ++ GK     
Sbjct: 237 SWNVMISGYAQNGHFIE-AINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLY 295

Query: 271 ALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMK 330
           A  +K+   DV+  A ++D Y+K G +D A ++F+ +PKR+ +  +A++G +  +G +  
Sbjct: 296 AGKNKIEIDDVLGSA-LVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAED 354

Query: 331 ALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI 390
           A+  F ++  +  + P+D + + +LSA +  G +++G        +  FS    H V ++
Sbjct: 355 AIIHF-HLMGKAGVTPNDVAYIGILSACSHAGLVEEG--------RSFFS----HMVKVV 401

Query: 391 DMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
            +  +                  ++H+  M++ L   G  E A +L+  M    IEPDD+
Sbjct: 402 GLQPR------------------IEHYGCMVDLLGRAGHLEEAEELIRNM---PIEPDDV 440

Query: 451 TFTGLLNAC 459
            +  LL AC
Sbjct: 441 IWKALLGAC 449


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 189/588 (32%), Positives = 325/588 (55%), Gaps = 44/588 (7%)

Query: 37  MITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSH 96
           M+ TGFI +     KL+A   S     +  +A  +F    A   + D   WN++++ + +
Sbjct: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVG-YAYSVF----AHTRELDVLTWNSMLRAFVN 55

Query: 97  GLDPKEALVMFCLMLDNGVSV-DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLF 155
              P+ AL  +  ML+   +V D+F+   +LK C+ L   + G  +HG + K    SDL+
Sbjct: 56  SNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLY 115

Query: 156 LQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR- 214
           ++  L+++Y  CG L+ AR LF++MG R+ V + SMI GY+K+     A  L+  M    
Sbjct: 116 IETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDG 175

Query: 215 -ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----ISWNSMLHGCVKCGKMDDA 269
              + ++  ++++  A+LK  L    ++   + E D+    +  +++++   KCG +  A
Sbjct: 176 FSPDEVTMATLVSACAELKD-LGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTA 234

Query: 270 QALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSM 329
           + +FDK+  +DV +W+ +I GY                               V+N  S 
Sbjct: 235 RQVFDKLSDKDVYAWSALIFGY-------------------------------VKNNRST 263

Query: 330 KALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVAL 389
           +AL++F  +     + P++ +++ V+SA AQLG ++ G  +H Y+ + Q   +     +L
Sbjct: 264 EALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSL 323

Query: 390 IDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD 449
           IDM+SKCG I+ A ++F+ +    +  WN+M+NG A+HGLG  A      M+   ++PD+
Sbjct: 324 IDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDE 383

Query: 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE 509
           ITF G+L AC+HAGLV+EG   F  +  ++ +  + +HYGCMVD+L RAG +  AR  I 
Sbjct: 384 ITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIR 443

Query: 510 DMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWND 569
            MP++P+  IW ++L ACR Y NL +GE  A+ L+ ++ +N   Y+LLSN++A   MWN+
Sbjct: 444 VMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNE 503

Query: 570 ARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
            ++VR +M E+ ++K PGCS + ++ + H F   D S  ++ +I  ML
Sbjct: 504 VKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIML 551



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 104/438 (23%), Positives = 205/438 (46%), Gaps = 57/438 (13%)

Query: 20  LLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           LL+ C  L +      +H +++      + ++ T L+  +++  C  L   AR++F +  
Sbjct: 85  LLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAA--CGDLKS-ARFLFERM- 140

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
                ++  +W ++I  Y     P EAL+++  M ++G S D+ + + ++ AC+ L  + 
Sbjct: 141 ---GHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLG 197

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G+++H  +R++       L + L+++Y +CG L+ ARQ+FDK+  +D  +++++I GYV
Sbjct: 198 VGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYV 257

Query: 197 KSGNIESARELF------DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL 250
           K+     A +LF       +M   E  +++  S       L++G      I        +
Sbjct: 258 KNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSV 317

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
              NS++    KCG +D A+ +FD M  +D++SW +M++G+A                  
Sbjct: 318 SLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFA------------------ 359

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
                         +G   +AL  F  MQ    L PD+ + + VL+A +  G + +G  +
Sbjct: 360 -------------LHGLGREALAQFRLMQTT-DLQPDEITFIGVLTACSHAGLVQEGKKL 405

Query: 371 HRYLEK-DQFSLNGKHGVALIDMYSKCGSIENA---IKVFEQIEDGSVDHWNAMINGLAI 426
              +E      L  +H   ++D+  + G +  A   I+V     DG++  W +M+    +
Sbjct: 406 FYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAI--WGSMLGACRV 463

Query: 427 HG---LGELAFDLLMEME 441
           +    LGE A   L+++E
Sbjct: 464 YNNLELGEEAARFLLKLE 481


>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
 gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
          Length = 531

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 199/582 (34%), Positives = 311/582 (53%), Gaps = 81/582 (13%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           L R+C++L  + Q+HA M+  GF+ +     +L+ + SS      T  AR +F +     
Sbjct: 14  LWRRCRSLRQIKQVHALMVLRGFLSDPSALRELIFA-SSVGVRGGTAHARLVFDRI---- 68

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLML------DNGVSVDKFSASLVLKACSRLG 133
              D F++N +I+  +H   P++A+ ++  M         GV  DK +   VL+AC+ +G
Sbjct: 69  PHPDRFMYNTLIRGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFVLRACAAMG 128

Query: 134 LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMID 193
             E G Q+H  + K    SD F++                               N++I 
Sbjct: 129 ASETGAQVHAHVVKAGCESDAFVR-------------------------------NALIG 157

Query: 194 GYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISW 253
            +   G++ +A  LFD    RE                                 D ++W
Sbjct: 158 MHATCGDLGAAAALFDG-EARE---------------------------------DAVAW 183

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
           ++M+ G  + G +  A+ LFD+ P +D+VSW  MI  YAKLG +  AR LFD  P RDVV
Sbjct: 184 SAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVV 243

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
           + NAM+ GYVR G   +A+E+F+ MQ  +   PD  +++ +LSA A  G +D G  +HR+
Sbjct: 244 SWNAMISGYVRCGSHKQAMELFEQMQA-MGEKPDTVTMLSLLSACADSGDMDAGRRLHRF 302

Query: 374 LEKDQFSLNGKH---GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
           L   +FS  G     G ALIDMY+KCGS+ +A++VF  ++D +V  WN++I GLA+HG  
Sbjct: 303 L-SGRFSRIGPSTVLGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHV 361

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
             A D+  +M + +++PD+ITF  +L AC+H G+V +G   F LM++ + +EP ++HYGC
Sbjct: 362 TEAIDVFQKMLQGNVKPDEITFVAVLVACSHGGMVDKGHEYFNLMQQRYMIEPNVKHYGC 421

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           MVD+L RAG ++ A   I  M +EPN VIWRTLL ACR +  L + E   + L+   S  
Sbjct: 422 MVDMLSRAGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGELELAEHANQELLKARSDA 481

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           S  +VLLSN++A +G W  +  +R +M +  + K  GC+ ++
Sbjct: 482 SGDFVLLSNIYASVGEWLGSENMRKLMDDSGVNKEAGCAVVD 523


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 202/614 (32%), Positives = 330/614 (53%), Gaps = 54/614 (8%)

Query: 21  LRKC-----KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           L+KC     K+L+   Q H  ++  G  ++T+L   L+    SS     T++A  +F   
Sbjct: 5   LKKCFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLL---RSSLHFAATQYATVVF--- 58

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLG-L 134
            A     + FL+N +I+        ++A+ ++  M  +G + D F+   VLKAC+RL   
Sbjct: 59  -AQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHY 117

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
              GL +H L+ K  F  D+F++  L+ LY + G+L                        
Sbjct: 118 FHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLT----------------------- 154

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLI 251
                    AR++FD +P  E+N++SW +++ GY +       L     + E     D  
Sbjct: 155 --------DARKVFDEIP--EKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSF 204

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEM 307
           +   +L+ C + G +   + +   M +     +V    +++D YAK G ++ ARR+FD M
Sbjct: 205 TLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGM 264

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
            ++DVV  +A++ GY  NG   +AL++F  MQ E  + PD  ++V V SA ++LG ++ G
Sbjct: 265 VEKDVVCWSALIQGYASNGMPKEALDVFFEMQRE-NVRPDCYAMVGVFSACSRLGALELG 323

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
                 ++ D+F  N   G ALID Y+KCGS+  A +VF+ +       +NA+I+GLA+ 
Sbjct: 324 NWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMC 383

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           G    AF +  +M ++ ++PD  TF GLL  C HAGLV +G   F  M  +  + P ++H
Sbjct: 384 GHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEH 443

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
           YGCMVD+  RAG +  A++LI  MPME N ++W  LL  CR +++  + E V K LI ++
Sbjct: 444 YGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELE 503

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
             NS  YVLLSN+++    W++A ++RS + ++ ++KLPGCSW+E++GVVHEF V D S 
Sbjct: 504 PWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSH 563

Query: 608 LQVRDIYYMLDNMW 621
                IY  L++++
Sbjct: 564 PLSHKIYEKLESLF 577


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 211/659 (32%), Positives = 340/659 (51%), Gaps = 88/659 (13%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           +HA ++  G +++  ++T+LV  +++     L+   R  F +      +KD + WN++I 
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLS---RCTFDQI----PQKDVYTWNSMIS 190

Query: 93  TYSHGLDPKEALVMFC-LMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
            Y H     EA+  F  L+L + +  D ++   VLKAC   G + +G +IH    K+ F 
Sbjct: 191 AYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRRIHCWAFKLGFQ 247

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
            ++F+   LI +Y R G+   AR LFD M  RD  S+N+MI G +++GN   A ++ D M
Sbjct: 248 WNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEM 307

Query: 212 PIR--ERNLISWNSVLNGYAQL--------------KSGLQF------------------ 237
            +   + N ++  S+L    QL              K GL+F                  
Sbjct: 308 RLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNL 367

Query: 238 --AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP------------------ 277
             A + F++M   D++SWNS++    +      A   F KM                   
Sbjct: 368 EDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIV 427

Query: 278 ----------------------KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
                                   DVV    ++D YAKLG +D A ++F+ +  +DV++ 
Sbjct: 428 AQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISW 487

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           N ++ GY +NG + +A+E++  M+    + P+  + V +L A A +G + +G+ IH  + 
Sbjct: 488 NTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVI 547

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           K    L+      LID+Y KCG + +A+ +F Q+   S   WNA+I+   IHG  E    
Sbjct: 548 KTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLK 607

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           L  EM    ++PD +TF  LL+AC+H+G V+EG  CF LM+  + ++P L+HYGCMVD+L
Sbjct: 608 LFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLL 666

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           GRAG++E A   I+DMP++P+  IW  LL ACR + N+ +G+  +  L  +DS N   YV
Sbjct: 667 GRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYV 726

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           LLSN++A +G W    +VRS+ +ER LKK PG S IE+   V  F+  ++S  + ++IY
Sbjct: 727 LLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIY 785


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 203/632 (32%), Positives = 342/632 (54%), Gaps = 41/632 (6%)

Query: 19  LLLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           ++L+ C +L D     QIH   +  GF  +    + L+  ++   C  L    ++    +
Sbjct: 179 VVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAK--CKKLDCSIQF----F 232

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
           H+  EK +   W+AII       D +  L +F  M   GV V + + + V ++C+ L  +
Sbjct: 233 HSMPEK-NWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSAL 291

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
             G Q+HG   K  FG+D+ +    + +Y++C  L  A++LF+ +   +  SYN++I GY
Sbjct: 292 RLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGY 351

Query: 196 VKS----------------------GNIESARELFDSM-PIRERNLISWNSVLNGYAQLK 232
            +S                      G++E  +    SM  + + N+   N++L+ Y +  
Sbjct: 352 ARSDKGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCG 411

Query: 233 SGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALF--DKMPKR----DVVSWAN 286
           + ++ A  +FE+M  RD +SWN+++    + G  +   +LF  +++ K     D      
Sbjct: 412 ALVE-ACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGIA 470

Query: 287 MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP 346
           +ID Y+K G ++ A +L D + ++ VV+ NA++ G+     S +A + F  M  E+ + P
Sbjct: 471 LIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKM-LEMGVDP 529

Query: 347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVF 406
           D+ +   +L   A L  ++ G  IH  + K +   +      L+DMYSKCG++++   +F
Sbjct: 530 DNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIF 589

Query: 407 EQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVK 466
           E+  +     WNAM+ G A HGLGE A  +   M+  +++P+  TF  +L AC H GLV+
Sbjct: 590 EKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVE 649

Query: 467 EGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           +GL  F  M   + L+P+L+HY C+VDI+GR+G +  A  LIE MP E + VIWRTLLS 
Sbjct: 650 KGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSI 709

Query: 527 CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLP 586
           C+ + N+ V E  A  ++ ++  +S++YVLLSN++A  GMWN+  ++R MM+   LKK P
Sbjct: 710 CKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEP 769

Query: 587 GCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           GCSWIE++  VH F V DK+  + ++IY  LD
Sbjct: 770 GCSWIEIKSEVHAFLVGDKAHPRSKEIYENLD 801



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 149/582 (25%), Positives = 266/582 (45%), Gaps = 84/582 (14%)

Query: 25  KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF------------ 72
           K L    Q HARMI T F     +T  L+  +    C+ L EFA  +F            
Sbjct: 56  KALCPGKQAHARMILTEFKPTVFVTNCLIQMYIK--CSDL-EFAFKVFDGMPQRDTVSWN 112

Query: 73  ---FKYHAFRE------------KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV 117
              F Y    +            ++D   WN++I  Y H  D ++ + +F  M   G   
Sbjct: 113 AMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVF 172

Query: 118 DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLF 177
           D+ + ++VLK+CS L     G+QIHGL  K+ F  D+   + L+ +Y +C  L+ + Q F
Sbjct: 173 DRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFF 232

Query: 178 DKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP-----IRERNLISWNSVLNGYAQLK 232
             M  ++ VS++++I G V++ ++    ELF  M      + +    S      G + L+
Sbjct: 233 HSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALR 292

Query: 233 SGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYA 292
            G Q      +     D++   + L   +KC  + DAQ LF+ +P  ++ S+  +I GYA
Sbjct: 293 LGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYA 352

Query: 293 K------LGRVDIARRL-------------------FDEMPKRDVVACNAMMGGYVRNGY 327
           +      L  V ++                         + + ++   NA++  Y + G 
Sbjct: 353 RSDKGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGA 412

Query: 328 SMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA--IHRYLEKDQFSLNGKH 385
            ++A  +F+ M     +  D  S   +++A  Q G+ +K ++  IH  + K +  L+   
Sbjct: 413 LVEACLVFEEM-----VSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFV 467

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
           G+ALIDMYSKCG +E A K+ +++ + +V  WNA+I+G ++    E A     +M  + +
Sbjct: 468 GIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGV 527

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK--LEPELQH----YGCMVDILGRAG 499
           +PD+ T+  +L+ CA+       L+  EL ++IH   ++ ELQ        +VD+  + G
Sbjct: 528 DPDNFTYATILDTCAN-------LVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCG 580

Query: 500 HIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
           +++  + + E  P   + V W  ++     Y    +GE   K
Sbjct: 581 NMQDFQLIFEKAP-NRDFVTWNAMVCG---YAQHGLGEEALK 618



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 139/523 (26%), Positives = 253/523 (48%), Gaps = 49/523 (9%)

Query: 119 KFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD 178
           K + S + + CS    +  G Q H  +    F   +F+ NCLI +Y++C  LEFA ++FD
Sbjct: 42  KKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFD 101

Query: 179 KMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQF 237
            M  RD+VS+N+M+ GY   G+I  A++LFD+MP  ER+++SWNS+++GY  L +G  + 
Sbjct: 102 GMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMP--ERDVVSWNSLISGY--LHNGDHRK 157

Query: 238 AWQIFEKMPERDLISWNSMLHGCVK-CGKMDD------AQALFDKMP-KRDVVSWANMID 289
              +F +M     +   +     +K C  ++D         L  KM    DVV+ + ++D
Sbjct: 158 VIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLD 217

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
            YAK  ++D + + F  MP+++ V+ +A++ G V+N      LE+F  MQ +  +    +
Sbjct: 218 MYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQ-KAGVGVSQS 276

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           +   V  + A L  +  G  +H +  K  F  +   G A +DMY KC ++ +A K+F  +
Sbjct: 277 TFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSL 336

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
            + ++  +NA+I G A    G              +  D+++ +G   ACA      EGL
Sbjct: 337 PNHNLQSYNAIIVGYARSDKG--------------LGLDEVSLSGAFRACAVIKGDLEGL 382

Query: 470 LCFEL-MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACR 528
               L M+ +   +  +     ++D+ G+ G +  A  + E+M +  + V W  +++A  
Sbjct: 383 QVHGLSMKSL--CQSNICVANAILDMYGKCGALVEACLVFEEM-VSRDAVSWNAIIAAHE 439

Query: 529 NYEN------LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
              N      L +   + K  +G+DS      + L +M++  GM   A ++   + E+ +
Sbjct: 440 QNGNEEKTLSLFIHNRIIKSRLGLDSFVG---IALIDMYSKCGMMEKAEKLHDRLAEQTV 496

Query: 583 KKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDS 625
                 SW     ++  F ++ +S    +    ML+    PD+
Sbjct: 497 -----VSW---NAIISGFSLQKQSEEAQKTFSKMLEMGVDPDN 531


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 194/578 (33%), Positives = 302/578 (52%), Gaps = 78/578 (13%)

Query: 120 FSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK 179
           F A  VLKAC ++   + G +IHG + K     D+F+ N L+ +Y  C  +E+AR +FDK
Sbjct: 95  FMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDK 154

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELF---DSMPIR--ERNLISWNSVLNGYAQLKSG 234
           M  RD VS+++MI    ++   + A EL    + M +R  E  ++S  ++    A ++ G
Sbjct: 155 MMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG 214

Query: 235 ---------------------------------LQFAWQIFEKMPERDLISWNSMLHGCV 261
                                            L  A Q+F  + ++ ++SW +M+ GC+
Sbjct: 215 KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCI 274

Query: 262 KCGKMDDAQALFDKMPKRDV------------------------------------VSWA 285
           +  ++++   LF +M + ++                                    VS A
Sbjct: 275 RSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLA 334

Query: 286 ---NMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
               ++D Y K   +  AR LFD    RDV+   AM+  Y +     +A  +FD M+   
Sbjct: 335 LATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTS- 393

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENA 402
            + P   ++V +LS  A  G +D G  +H Y++K++  ++     AL+DMY+KCG I  A
Sbjct: 394 GVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAA 453

Query: 403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
            ++F +     +  WNA+I G A+HG GE A D+  EMER  ++P+DITF GLL+AC+HA
Sbjct: 454 GRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHA 513

Query: 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRT 522
           GLV EG   FE M     L P+++HYGCMVD+LGRAG ++ A  +I+ MP++PN ++W  
Sbjct: 514 GLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGA 573

Query: 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
           L++ACR ++N  +GE  A  L+ ++  N    VL+SN++A    W+DA  VR  MK   +
Sbjct: 574 LVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGM 633

Query: 583 KKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           KK PG S IE+ G VHEF + D+S  Q+R I  ML  M
Sbjct: 634 KKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEM 671



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 117/282 (41%), Gaps = 42/282 (14%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           Q+HA ++  GF  +  L T LV  +    C+ +   AR +F       + +D  +W A++
Sbjct: 319 QLHAYILRNGFSVSLALATALVDMYGK--CSDIRN-ARALFDS----TQNRDVMIWTAML 371

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
             Y+      +A  +F  M  +GV   K +   +L  C+  G ++ G  +H  + K    
Sbjct: 372 SAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVE 431

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
            D  L   L+ +Y +CG +  A +LF +   RD   +N++I G+   G  E A ++F  M
Sbjct: 432 VDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEM 491

Query: 212 PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQA 271
              ER  +  N                            I++  +LH C   G + + + 
Sbjct: 492 ---ERQGVKPND---------------------------ITFIGLLHACSHAGLVTEGKK 521

Query: 272 LFDKMPKR-----DVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           LF+KM         +  +  M+D   + G +D A  +   MP
Sbjct: 522 LFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMP 563


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 201/615 (32%), Positives = 323/615 (52%), Gaps = 59/615 (9%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLT-------EFARY 70
           LLLL  CK++ ++ QIHA +I     ++T  TT  + S     CT +T         A  
Sbjct: 30  LLLLSSCKSVREIKQIHASIIKANTTRST--TTLPIISL----CTKITSLLQQDVHLADS 83

Query: 71  IFFKYHA-----FREKKDPFLWNAIIKTYSHGLDP-KEALVMFCLMLDNGVSVDKFSASL 124
           I   ++A     F  +   +++NAII++ S   +       ++  ML  G+S D ++   
Sbjct: 84  IQNLWYASSLANFCHQNPVYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTLPY 143

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +LKACS+     E LQIH    K    S+LF++N L+  Y   G+               
Sbjct: 144 LLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGF--------------- 188

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244
                           IE+  ++FD  P    +LISW +++  Y+++    +     F  
Sbjct: 189 ----------------IEAVEKVFDQGP--HWDLISWTTLIQAYSKMGYPSEAIAAFFRM 230

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR------DVVSWANMIDGYAKLGRVD 298
               D ++   +L  C + G     + +   M         DV     ++D Y K G+  
Sbjct: 231 NCTADRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPH 290

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
           +AR+LF  MP +++V+ N+M+ G    G   +AL +F  MQ  + L PD  +LV VL++ 
Sbjct: 291 LARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQ-TMGLKPDSVTLVGVLNSC 349

Query: 359 AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWN 418
           A LG ++ G  +H Y++K+    +G    AL+DMY+KCGSI+ A  VF+ ++   V  + 
Sbjct: 350 ANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYT 409

Query: 419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRI 478
           AMI G A+HG  + A  +  EM R+ + PD +T  G+L+AC+HAGL++EG   F+ M R+
Sbjct: 410 AMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEGRRHFQDMSRL 469

Query: 479 HKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEP 538
           + L+P+ +HYGCMVD+LGRAG I  A      MP+ P+  +W +LL AC+ +  + +GE 
Sbjct: 470 YHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPIVPDASVWGSLLGACKIHAKVELGET 529

Query: 539 VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVH 598
           V + LI M+     +Y+L+SN+++    W DA + R  MK+ N+KK PGCS IE++G+VH
Sbjct: 530 VIQKLIEMEPERDGAYILMSNIYSSANRWRDALKWRKAMKQNNIKKTPGCSSIEVDGMVH 589

Query: 599 EFFVRDKSRLQVRDI 613
           EF   +KS  + R++
Sbjct: 590 EFRKGEKSHPKSREM 604


>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 196/580 (33%), Positives = 320/580 (55%), Gaps = 26/580 (4%)

Query: 16  STLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           S L LL KCKT+ ++ ++H  MITT  I++    ++LV  F +   +    +A+ +F + 
Sbjct: 7   SILSLLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLV-DFCAYSDSGNLNYAKSVFNQI 65

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
               ++   ++WN++IK YS    P EAL M+  M   G + D F+   VLKACS +   
Sbjct: 66  ----DRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGY 121

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
             G  +H  + K  F  D++    L+ +Y  CG +E A ++FD +   + V++ S+I G 
Sbjct: 122 NLGQCVHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGC 181

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
           + +     A  ++  M +       W+   N    +   +  A         RDL +   
Sbjct: 182 ISNDCPSEAVRVYKDMEL-------WSVAPNEITMVNVLVACA-------RSRDLNA-GR 226

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
            +H   + G+M      F      +V+    ++D YAK G +  AR LF++MP R++VA 
Sbjct: 227 WVHD--RTGQM--GLDPFQSNSNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAW 282

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           N+M+G Y + G + +AL++F +M+   +  PD A+ + V+ A A LG +  G A+H Y+ 
Sbjct: 283 NSMIGAYNQYGQANEALDLFSDMRIAGF-DPDKATFLCVIGACAHLGALVSGQALHAYVS 341

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           K   + +   G AL+DMY+K G  E A +VF +++   V  W ++I GLA+HG GE A  
Sbjct: 342 KTNLTDDTAIGTALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALT 401

Query: 436 LLMEM-ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
              +M E  ++ PD+IT+ G+L+AC+H G V++G   F  M+ +H +EP  QHYGCMVD+
Sbjct: 402 FFKKMQEDTALIPDEITYIGVLSACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDL 461

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           L RAG +  A  L+E MP+EPN  IW  LL+ C+ Y+N++V + V + +  ++   S  Y
Sbjct: 462 LSRAGRLGEAERLVEKMPVEPNTAIWSALLNGCKIYQNIDVADRVRRRVRELEVDGSGVY 521

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           VLLSN++AG   W + +  R +MKER ++K  G S +E++
Sbjct: 522 VLLSNIYAGACRWEEVKMARELMKERKIQKSLGHSSVEMK 561


>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 194/543 (35%), Positives = 292/543 (53%), Gaps = 38/543 (6%)

Query: 81  KKDPFLWNAIIKTYSHGLDP-KEALVMFCLMLDNG-VSVDKFSASLVLKACSRLGLIEEG 138
           ++D   W  +I  +S   D   +AL +F LM+ +G  + ++F+   V++AC RLG++  G
Sbjct: 192 RRDVVAWTTLISGFSKNGDGCGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVG 251

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
             +HGLL K     D  +   L+  Y  C  ++ A ++   +      + NS+I+G +  
Sbjct: 252 RTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISM 311

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLH 258
           G IE A EL                                 +F  M E + +S+N M+ 
Sbjct: 312 GRIEDA-EL---------------------------------VFNGMTEMNPVSYNLMIK 337

Query: 259 GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP-KRDVVACNA 317
           G    G+MDD++ LF+KMP R + S   MI  Y++ G +D A  LF+E   ++D V  N+
Sbjct: 338 GYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTWNS 397

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           M+ GY+ +G   +AL+++  M   L +    ++   +  A + LG + +G  +H +L K 
Sbjct: 398 MISGYIHSGQPEEALKLYITMH-RLSIQQTQSTFSALFHACSCLGSLHQGQLLHAHLIKT 456

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLL 437
            F  N   G +LIDMYSKCGSI  A   F  I   +V  W A+ING A HGLG  A  L 
Sbjct: 457 PFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLF 516

Query: 438 MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
             M    + P+  TF G+L+AC+ AGLV EG+  F  M R + + P L+HY C+VD+LGR
Sbjct: 517 DRMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGR 576

Query: 498 AGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557
           +GHI  A   I+ MP+E + V+W  LLSAC  + +L VGE VA+ +   D    SSYV+L
Sbjct: 577 SGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLEVGERVAEKMFSFDPKPISSYVIL 636

Query: 558 SNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           SN++AGLG W +   VR +++   +KK PGCSWIEL   +H F + D+S      IY  L
Sbjct: 637 SNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIELNNKIHVFSIEDRSHPYCNMIYATL 696

Query: 618 DNM 620
           +++
Sbjct: 697 EHL 699



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 183/416 (43%), Gaps = 85/416 (20%)

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
           S++   N  IS Y +   L+ ARQLFD+M  R  VS+N+MI  Y K G    A  L  SM
Sbjct: 30  SEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSM 89

Query: 212 PIRERNL--ISWNSVLNGYAQ--------------LKSG-----------LQF------- 237
                 L   +++SVL+  A+              LKSG           L F       
Sbjct: 90  HRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEI 149

Query: 238 --AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG 295
             A ++F+ +  R+ + W+ ML G V C  MDDA ++F KMP+RDVV+W  +I G++K G
Sbjct: 150 GEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNG 209

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
                              C              KALEIF  M       P++ +   V+
Sbjct: 210 D-----------------GCG-------------KALEIFRLMMRSGETTPNEFTFDCVV 239

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
            A  +LG +  G  +H  L K     +   G AL++ Y +C +I++A++V + + +  ++
Sbjct: 240 RACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLN 299

Query: 416 HWNAMINGLAIHGL---GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCF 472
             N++I GL   G     EL F+ + EM       + +++  ++   A  G + +    F
Sbjct: 300 ALNSLIEGLISMGRIEDAELVFNGMTEM-------NPVSYNLMIKGYAVGGQMDDSKRLF 352

Query: 473 ELM--RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           E M  R I            M+ +  R G I+ A  L E+   E + V W +++S 
Sbjct: 353 EKMPCRTIFS-------SNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISG 401



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 149/338 (44%), Gaps = 43/338 (12%)

Query: 280 DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQ 339
           +++S    I  YAK  ++D+AR+LFD+MP+R VV+ N M+  Y ++G   +AL +  +M 
Sbjct: 31  EIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMH 90

Query: 340 CELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK---DQFSLNGKHGVALIDMYSKC 396
              ++   +++   VLS  A+L  +  G  IH  + K   + F L G    AL+  Y+ C
Sbjct: 91  -RSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGS---ALLYFYASC 146

Query: 397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLL 456
             I  A +VF+ +   +   W+ M+ G     + + A  + ++M R     D + +T L+
Sbjct: 147 FEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPR----RDVVAWTTLI 202

Query: 457 NACAHAG-LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARN---LIEDMP 512
           +  +  G    + L  F LM R  +  P    + C+V   GR G +   R    L+    
Sbjct: 203 SGFSKNGDGCGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCG 262

Query: 513 MEPNDVIWRTL-------------LSACRNYEN--LNVGEPVAKHLI------------- 544
           +E +  I   L             L  C+   N  LN    + + LI             
Sbjct: 263 LEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFN 322

Query: 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
           GM   N  SY L+   +A  G  +D++R+   M  R +
Sbjct: 323 GMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTI 360


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 175/503 (34%), Positives = 294/503 (58%), Gaps = 32/503 (6%)

Query: 148 VAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK-SGNIESARE 206
           V   SD+   N  I+ +VR   LE AR +F+KM +R +V++N+M+ GY K +G ++ A E
Sbjct: 67  VDTASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHE 126

Query: 207 LFDSMP-----------------------------IRERNLISWNSVLNGYAQLKSGLQF 237
           LFD +P                             +  +++ SWN++++G+AQ    +Q 
Sbjct: 127 LFDKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQ-NGQMQK 185

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
           A+ +F  MPE++ +SW++M+ G V+ G ++ A+ L+  +  + VV    M+ GY K G+V
Sbjct: 186 AFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKV 245

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
           ++A R+F  M  +++V  N+M+ GYV N  +   L++F  M  E  + P+  SL  VL  
Sbjct: 246 ELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTM-IESRVRPNPLSLSSVLLG 304

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
            + L  +  G  +H+ + K   S +     +LI MY KCG +++A K+F ++    V  W
Sbjct: 305 CSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISW 364

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
           NAMI+G A HG G  A  L  +M   +++PD ITF  ++ AC HAG V  G+  F+ M++
Sbjct: 365 NAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKK 424

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
              +E +  HY C++D+LGRAG ++ A +LI++MP +P+  I+ TLL ACR ++NL++ E
Sbjct: 425 EFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAE 484

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVV 597
             A++L+ +D ++++ YV L+N++A    W+   +VR MMKE N+ K+PG SWIE++ V 
Sbjct: 485 FAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVT 544

Query: 598 HEFFVRDKSRLQVRDIYYMLDNM 620
           HEF   D+   ++  I+  L+ +
Sbjct: 545 HEFRSSDRLHPELTSIHKKLNEL 567



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 194/401 (48%), Gaps = 62/401 (15%)

Query: 51  KLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSH-GLDPKEALVMFCL 109
           K +ASF  + C    E AR +F K       +    WN ++  Y+      KEA  +F  
Sbjct: 78  KTIASFVRA-CD--LESARNVFEKMSV----RTTVTWNTMLSGYTKVAGKVKEAHELF-- 128

Query: 110 MLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY 169
             D     D  S +++L    R   +E  L       K+    D+   N LIS + + G 
Sbjct: 129 --DKIPEPDSVSYNIMLVCYLRSYGVEAAL---AFFNKMPV-KDIASWNTLISGFAQNGQ 182

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA 229
           ++ A  LF  M  ++ VS+++MI GYV+ G++E+A EL+ ++ +  ++++   ++L GY 
Sbjct: 183 MQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGM--KSVVVETAMLTGYM 240

Query: 230 QLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK----------- 278
           +    ++ A +IF++M  ++L++WNSM+ G V+  + +D   +F  M +           
Sbjct: 241 KF-GKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLS 299

Query: 279 ----------------------------RDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
                                       +D  +  ++I  Y K G +D A +LF EMP++
Sbjct: 300 SVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRK 359

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
           DV++ NAM+ GY ++G   KAL +FD M+    + PD  + V V+ A    G +D GV  
Sbjct: 360 DVISWNAMISGYAQHGAGRKALHLFDKMR-NGTMKPDWITFVAVILACNHAGFVDLGVQY 418

Query: 371 HRYLEKDQFSLNGK--HGVALIDMYSKCGSIENAIKVFEQI 409
            + ++K +F +  K  H   +ID+  + G ++ A+ + +++
Sbjct: 419 FKSMKK-EFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEM 458



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 106/248 (42%), Gaps = 35/248 (14%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           K+   WN++I  Y      ++ L +F  M+++ V  +  S S VL  CS L  +  G Q+
Sbjct: 258 KNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQM 317

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H L+ K     D      LIS+Y +CG L+ A +LF +M  +D +S+N+MI GY + G  
Sbjct: 318 HQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAG 377

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
             A  LFD M              NG  +                  D I++ +++  C 
Sbjct: 378 RKALHLFDKM-------------RNGTMK-----------------PDWITFVAVILACN 407

Query: 262 KCGKMDDAQALFDKMPKR-----DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
             G +D     F  M K        V +  +ID   + GR+D A  L  EMP +   A  
Sbjct: 408 HAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIY 467

Query: 317 AMMGGYVR 324
             + G  R
Sbjct: 468 GTLLGACR 475


>gi|357119066|ref|XP_003561267.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 588

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 203/613 (33%), Positives = 326/613 (53%), Gaps = 53/613 (8%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLV-ASFS-SSPCTPLTEFARYIF 72
           Q  L +LR  K  + + Q HA+++  G   N  L   LV A+FS SSP            
Sbjct: 3   QRLLEILRSLKFRHHLWQTHAQILVRGLAANPRLLPALVSAAFSVSSPSQAAAVLRAASA 62

Query: 73  FKYHAFREKKDPFLWNAIIK--TYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS 130
                          N +I+  T   G  P++AL  +  M    V  + F+ + +L+AC 
Sbjct: 63  AATTVAH--------NTLIERLTKLRGRGPEDALTAYTAMRAVEVPPNGFTFTFLLRACE 114

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRC---GYLEFARQLFDKMGIRDSVS 187
              ++    +IHG + K  FG D+ +QN L+ +Y +C   GY+  ARQ+FD+M  +D +S
Sbjct: 115 FSRILPLCRRIHGQILKCGFGRDVVVQNALLDVYHKCSNPGYVGDARQVFDEMIEKDVIS 174

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
           +NS++  Y+ SG+++ A ELF+ MP  ERN++SWN+V+  +A++   +  A  +F++MP 
Sbjct: 175 WNSIVGVYMSSGDVKGAMELFEVMP--ERNVVSWNTVVASFARV-GDMASAQAVFDRMPT 231

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
           R+ ISWN M+ G    G ++ A+++F +  ++DVVSW  MI  YAK+G +D+A+ LFD+M
Sbjct: 232 RNAISWNLMISGYAAGGDVEAARSIFYQTDQKDVVSWTAMISAYAKIGNLDLAKELFDQM 291

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
           P +++V+ NAM+ GY  N    +AL  F  M  E    PD+A+LV V+SA AQLG  +  
Sbjct: 292 PVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSAEYC 351

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
             +  ++ K+   L    G ALIDM++KCG +  A  +F  ++   V  W  MI+GL  +
Sbjct: 352 SWVSSFIRKNNNDLTVALGNALIDMFAKCGDVGRAQLIFSGMKSRCVITWTTMISGLGFN 411

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           G    A  +  +M R  +  DD  F  +L AC+H G + EG   F  M  +H ++P ++H
Sbjct: 412 GQCREALLVYNDMCREGVGLDDTVFIAVLAACSHGGFLHEGWSIFRQMVELHGIKPRMEH 471

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
           YGC+VD+LGRA  IE                                    V+K ++ ++
Sbjct: 472 YGCIVDLLGRAELIEY-----------------------------------VSKKIVEIE 496

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
             +SS  VL+SN  A    W+     R++M++  ++K+PG S I+++  VHEF  +D   
Sbjct: 497 PFSSSYQVLVSNCGALKERWDCVTDARTIMRDFGMEKVPGSSSIQVDREVHEFLAKDTRH 556

Query: 608 LQVRDIYYMLDNM 620
              ++IY  +D +
Sbjct: 557 HLRKEIYETIDGL 569


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 186/476 (39%), Positives = 283/476 (59%), Gaps = 26/476 (5%)

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE---LFDSMPIRER---NLISWNS 223
           +++AR +F +M   +   +N+++    ++ +     E   LF +M    R   N  ++ S
Sbjct: 68  IDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPS 127

Query: 224 VLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK----- 275
           VL   A+   L+ G Q    I +     D    ++++   V C  M+DA +LF K     
Sbjct: 128 VLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDF 187

Query: 276 -------MPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVR 324
                  + KR    +VV W  MIDG  +LG +  A+ LFDEMP R VV+ N M+ GY +
Sbjct: 188 DGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQ 247

Query: 325 NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK 384
           NG+ ++A+ +F  MQ    + P+  +LV VL AIA++G ++ G  IH Y  K++  ++  
Sbjct: 248 NGHFIEAINLFQEMQSS-NIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDV 306

Query: 385 HGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS 444
            G AL+DMYSKCGSI+ A++VFE +   +   W+A+I   A+HG  E A      M +  
Sbjct: 307 LGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAG 366

Query: 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504
           + P+D+ + G+L+AC+HAGLV+EG   F  M ++  L+P ++HYGCMVD+LGRAGH+E A
Sbjct: 367 VTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEA 426

Query: 505 RNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL 564
             LI +MP+EP+DVIW+ LL AC+ ++NL +GE VA+ L+ +   +S SYV LSN++A L
Sbjct: 427 EELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASL 486

Query: 565 GMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           G W    RVR  MK  +++K PGCSWIE+ G++HEF V D S  + ++I  ML  M
Sbjct: 487 GNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEM 542



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 146/489 (29%), Positives = 246/489 (50%), Gaps = 81/489 (16%)

Query: 6   NYNQPCNSTQSTLLLLRK----CKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPC 61
           N N+  N +    L+L K    CKT  D+ Q+HA  I TG I++  LT   V  F +   
Sbjct: 7   NPNRTLNFSPQPPLILSKPFTSCKTPRDLKQLHAIFIKTGQIQDP-LTAAEVIKFCAFS- 64

Query: 62  TPLTEFARYIFFKYHAFREKKDP--FLWNAIIKTYSHGLDP---KEALVMFCLMLDNG-V 115
                 +R I +    FR+  +P  F WN I++  +   D     EAL++F  ML +G V
Sbjct: 65  ------SRDIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRV 118

Query: 116 SVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQ 175
             ++F+   VLKAC+R   + EG QIHGL+ K  F  D F+ + L+ +YV C  +E A  
Sbjct: 119 KPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYS 178

Query: 176 LFDKMGIR----------------DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLI 219
           LF K  +                 + V +N MIDG V+ G+I+SA+ LFD MP   R+++
Sbjct: 179 LFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMP--PRSVV 236

Query: 220 SWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----ISWNSMLH-----GCVKCGKMDDAQ 270
           SWN +++GYAQ    ++ A  +F++M   ++    ++  S+L      G ++ GK     
Sbjct: 237 SWNVMISGYAQNGHFIE-AINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLY 295

Query: 271 ALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMK 330
           A  +K+   DV+  A ++D Y+K G +D A ++F+ +PKR+ +  +A++G +  +G +  
Sbjct: 296 AGKNKVEIDDVLGSA-LVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAED 354

Query: 331 ALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI 390
           A+  F ++  +  + P+D + + +LSA +  G +++G        +  FS    H V ++
Sbjct: 355 AIIHF-HLMGKAGVTPNDVAYIGILSACSHAGLVEEG--------RSFFS----HMVKVV 401

Query: 391 DMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
            +  +                  ++H+  M++ L   G  E A +L+  M    IEPDD+
Sbjct: 402 GLQPR------------------IEHYGCMVDLLGRAGHLEEAEELIRNM---PIEPDDV 440

Query: 451 TFTGLLNAC 459
            +  LL AC
Sbjct: 441 IWKALLGAC 449


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 208/679 (30%), Positives = 332/679 (48%), Gaps = 86/679 (12%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           LL+ C    D+    Q+H  ++  G   N ++   L+  +    C  + E AR +F K+ 
Sbjct: 50  LLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVH--CGSVNE-ARRLFDKF- 105

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
                K    WN +I  Y+H    +EA  +F LM   G+  DKF+   +L ACS    + 
Sbjct: 106 ---SNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALN 162

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G ++H  + +    ++  + N LIS+Y +CG +  AR++FD M  RD VS+ ++   Y 
Sbjct: 163 WGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYA 222

Query: 197 KSGNIESARELFDSM---PIRERNLISWN--SVLNGYAQLKSGLQF-------------- 237
           +SG  + + + + +M    +R   +   N  S     A L+ G Q               
Sbjct: 223 ESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVR 282

Query: 238 -----------------AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM---- 276
                            A ++FE +P RD+I+WN+M+ G V  G++++A  +F +M    
Sbjct: 283 VSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKEC 342

Query: 277 --PKR---------------------------------DVVSWANMIDGYAKLGRVDIAR 301
             P R                                 DV     +I+ Y+K G +  AR
Sbjct: 343 VAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDAR 402

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
           ++FD MPKRDVV+  A++GGY   G  +++   F  M  +  +  +  + + VL A +  
Sbjct: 403 QVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKM-LQQGVEANKITYMCVLKACSNP 461

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
             +  G  IH  + K     +     AL+ MY KCGS+E+AI+V E +    V  WN +I
Sbjct: 462 VALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLI 521

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
            GLA +G G  A      M+   + P+  TF  +++AC    LV+EG   F  MR+ + +
Sbjct: 522 GGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGI 581

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
            P  +HY CMVDIL RAGH+  A ++I  MP +P+  +W  LL+ACR + N+ +GE  A+
Sbjct: 582 VPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAE 641

Query: 542 HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
             + ++  N+ +YV LS ++A  GMW D  ++R +MKER +KK PG SWIE+ G VH F 
Sbjct: 642 QCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFV 701

Query: 602 VRDKSRLQVRDIYYMLDNM 620
             D+S  +  +IY  L+ +
Sbjct: 702 AGDQSHPRTEEIYSELEAL 720



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 131/515 (25%), Positives = 225/515 (43%), Gaps = 81/515 (15%)

Query: 112 DNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLE 171
             G  VD +    +L++C +   +  G Q+H  + +     ++++ N L+ LYV CG + 
Sbjct: 37  QKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVN 96

Query: 172 FARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELF-----DSMPIRERNLISWNSVLN 226
            AR+LFDK   +  VS+N MI GY   G  + A  LF     + +   +   +S  S  +
Sbjct: 97  EARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACS 156

Query: 227 GYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN 286
             A L  G +   ++ E     +    N+++    KCG + DA+ +FD M  RD VSW  
Sbjct: 157 SPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTT 216

Query: 287 MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP 346
           +                                G Y  +GY+ ++L+ +  M  E  + P
Sbjct: 217 LT-------------------------------GAYAESGYAQESLKTYHAMLQE-GVRP 244

Query: 347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVF 406
              + + VLSA   L  ++KG  IH  + + +   + +   AL  MY KCG++++A +VF
Sbjct: 245 SRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVF 304

Query: 407 EQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVK 466
           E + +  V  WN MI GL   G  E A  +   M +  + PD +T+  +L+ACA  G   
Sbjct: 305 ECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPG--- 361

Query: 467 EGLLCF-ELMRRIHK--LEPELQHYGCMVDILGRAGHIEAARNLIEDMP----------- 512
            GL C  E+  R  K  L  +++    ++++  +AG ++ AR + + MP           
Sbjct: 362 -GLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALV 420

Query: 513 -----------------------MEPNDVIWRTLLSACRNYENLNVGEPVAKHLI--GMD 547
                                  +E N + +  +L AC N   L  G+ +   ++  G+ 
Sbjct: 421 GGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIF 480

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
           +  + +  L+S M+   G   DA RV   M  R++
Sbjct: 481 ADLAVANALMS-MYFKCGSVEDAIRVSEGMSTRDV 514



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 168/401 (41%), Gaps = 60/401 (14%)

Query: 241 IFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM----PKRDVVSWANMIDGYAKLGR 296
           + +K  + D   +  +L  CVK   +   + + + +     K +V     ++  Y   G 
Sbjct: 35  LHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGS 94

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           V+ ARRLFD+   + VV+ N M+ GY   G   +A  +F  MQ E  L PD  + V +LS
Sbjct: 95  VNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQE-GLEPDKFTFVSILS 153

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
           A +    ++ G  +H  + +   + N   G ALI MY+KCGS+ +A +VF+ +       
Sbjct: 154 ACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVS 213

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           W  +    A  G  + +      M +  + P  IT+  +L+AC     +++G       +
Sbjct: 214 WTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKG-------K 266

Query: 477 RIHKLEPELQHYG------CMVDILGRAGHIEAARNLIEDMP------------------ 512
           +IH    E +H+        +  +  + G ++ AR + E +P                  
Sbjct: 267 QIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSG 326

Query: 513 ----------------MEPNDVIWRTLLSACRNYENLNVGEPVAKHLI--GMDSSNSSSY 554
                           + P+ V +  +LSAC     L  G+ +    +  G+ S      
Sbjct: 327 QLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGN 386

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG 595
            L+ NM++  G   DAR+V   M +R++      SW  L G
Sbjct: 387 ALI-NMYSKAGSMKDARQVFDRMPKRDV-----VSWTALVG 421



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 117/286 (40%), Gaps = 53/286 (18%)

Query: 343 YLHP-----DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
           YLH      D    V +L +  +   +  G  +H ++ +     N      L+ +Y  CG
Sbjct: 34  YLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCG 93

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
           S+  A ++F++  + SV  WN MI+G A  GLG+ AF+L   M++  +EPD  TF  +L+
Sbjct: 94  SVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILS 153

Query: 458 ACAHAGLVKEGLLCFELMRRIH--KLEPELQHYG----CMVDILGRAGHIEAARNLIEDM 511
           AC+    +  G       R +H   +E  L +       ++ +  + G +  AR + + M
Sbjct: 154 ACSSPAALNWG-------REVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAM 206

Query: 512 P----------------------------------MEPNDVIWRTLLSACRNYENLNVGE 537
                                              + P+ + +  +LSAC +   L  G+
Sbjct: 207 ASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGK 266

Query: 538 PVAKHLIGMD-SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
            +   ++  +  S+      L+ M+   G   DAR V   +  R++
Sbjct: 267 QIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDV 312


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 188/590 (31%), Positives = 326/590 (55%), Gaps = 48/590 (8%)

Query: 37  MITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKK--DPFLWNAIIKTY 94
           M+ TGFI +     KL+A         L+  +  + + Y  F   +  D   WN++++ +
Sbjct: 1   MVVTGFIHHKPSLNKLIAHV-------LSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAF 53

Query: 95  SHGLDPKEALVMFCLMLDNGVSV-DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSD 153
            +   P+ AL  +  ML+   +V D+F+   +LK C+ L   + G  +HG + K    SD
Sbjct: 54  VNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSD 113

Query: 154 LFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPI 213
           L+++  L+++Y  CG L+ AR LF++MG R+ V + SMI GY+K+     A  L+  M  
Sbjct: 114 LYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEE 173

Query: 214 R--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----ISWNSMLHGCVKCGKMD 267
                + ++  ++++  A+LK  L    ++   + E D+    +  +++++   KCG + 
Sbjct: 174 DGFSPDEVTMATLVSACAELKD-LGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLK 232

Query: 268 DAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGY 327
            A+ +FD++  +DV +W+ +I GY                               V+N  
Sbjct: 233 TARQVFDQLSDKDVYAWSALIFGY-------------------------------VKNNR 261

Query: 328 SMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV 387
           S +AL++F  +     + P++ +++ V+SA AQLG ++ G  +H Y+ + Q   +     
Sbjct: 262 STEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNN 321

Query: 388 ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP 447
           +LIDM+SKCG I+ A ++F+ +    +  WN+M+NGLA+HGLG  A      M+   ++P
Sbjct: 322 SLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQP 381

Query: 448 DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNL 507
           D+ITF G+L AC+HAGLV+EG   F  +  ++ +  + +HYGCMVD+L RAG +  AR  
Sbjct: 382 DEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREF 441

Query: 508 IEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMW 567
           I  MP++P+  IW ++L ACR Y NL +GE  A+ L+ ++ +N   Y+LLSN++A   MW
Sbjct: 442 IRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMW 501

Query: 568 NDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           N+ ++VR +M E+ ++K PGCS + ++ + H F   D S  ++ +I  ML
Sbjct: 502 NEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIML 551



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 104/438 (23%), Positives = 204/438 (46%), Gaps = 57/438 (13%)

Query: 20  LLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           LL+ C  L +      +H +++      + ++ T L+  +++  C  L   AR++F +  
Sbjct: 85  LLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAA--CGDLKS-ARFLFERM- 140

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
                ++  +W ++I  Y     P EAL+++  M ++G S D+ + + ++ AC+ L  + 
Sbjct: 141 ---GHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLG 197

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G+++H  +R++       L + L+++Y +CG L+ ARQ+FD++  +D  +++++I GYV
Sbjct: 198 VGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYV 257

Query: 197 KSGNIESARELF------DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL 250
           K+     A +LF       +M   E  +++  S       L++G      I        +
Sbjct: 258 KNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSV 317

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
              NS++    KCG +D A+ +FD M  +D++SW +M++G A                  
Sbjct: 318 SLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLA------------------ 359

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
                         +G   +AL  F  MQ    L PD+ + + VL+A +  G + +G  +
Sbjct: 360 -------------LHGLGREALAQFHLMQTT-DLQPDEITFIGVLTACSHAGLVQEGKKL 405

Query: 371 HRYLEK-DQFSLNGKHGVALIDMYSKCGSIENA---IKVFEQIEDGSVDHWNAMINGLAI 426
              +E      L  +H   ++D+  + G +  A   I+V     DG++  W +M+    +
Sbjct: 406 FYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAI--WGSMLGACRV 463

Query: 427 HG---LGELAFDLLMEME 441
           +    LGE A   L+E+E
Sbjct: 464 YNNLELGEEAARCLLELE 481


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 217/644 (33%), Positives = 335/644 (52%), Gaps = 92/644 (14%)

Query: 61  CTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKF 120
           C+ L + AR++F K       K+  LWN +I+ Y+     +EA+ ++  ML  G++ ++F
Sbjct: 64  CSEL-KIARHVFDKMP--HRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRF 120

Query: 121 SASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
           +   VLKACS L    EG +IH  ++++   S++++   L+  Y +CG L+ A+++FDKM
Sbjct: 121 TFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKM 180

Query: 181 GIRDSVSYNSMIDGY-VKSGNIESARELFDSMPIRERNLISWNS-----VLNGYAQLKS- 233
             RD V++NSMI G+ +  G+ +    L   M    +N +S NS     VL   AQ+ S 
Sbjct: 181 HKRDVVAWNSMISGFSLHEGSYDEVARLLVQM----QNDVSPNSSTIVGVLPAVAQVNSL 236

Query: 234 ---------------------------------GLQFAWQIFEKMP-ERDLISWNSMLHG 259
                                             + +A +IF+ M   ++ ++W++M+  
Sbjct: 237 RHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGA 296

Query: 260 CVKCGKMDDAQALFDK--MPKRDVVSW------------ANMID---------------- 289
            V C  M +A  LF +  M K DV+              AN+ D                
Sbjct: 297 YVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGF 356

Query: 290 ------------GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
                        YAK G ++ A R F+EM  RD V+  A++ GYV+NG S + L +F  
Sbjct: 357 VLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLE 416

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
           MQ    ++P+ A+L  VL A A L  +  G   H Y     F+ +     ALIDMY+KCG
Sbjct: 417 MQLS-GINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCG 475

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            I+ A KVF+++    +  WN MI    IHG+G  A  L   M+   ++PDD+TF  L++
Sbjct: 476 KIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLIS 535

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
           AC+H+GLV EG   F  M +   + P ++HY CMVD+L RAG  +   + IE MP+EP+ 
Sbjct: 536 ACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDV 595

Query: 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
            +W  LLSACR Y+N+ +GE V+K +  +   ++ ++VLLSNM++ +G W+DA +VR   
Sbjct: 596 RVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQ 655

Query: 578 KERNLKKLPGCSWIELEGVVHEFFVRD-KSRLQVRDIYYMLDNM 620
           KE+  +K PGCSWIE+ GVVH F     +S  Q+  I   LD +
Sbjct: 656 KEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISNKLDEL 699



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 116/450 (25%), Positives = 186/450 (41%), Gaps = 88/450 (19%)

Query: 160 LISLYVRCGYLEFARQLFDKMGIR--DSVSYNSMIDGYVKSGNIESARELFDSMPIR--E 215
           L+ LY+ C  L+ AR +FDKM  R  + V +N +I  Y  +G  E A +L+  M      
Sbjct: 57  LVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGIT 116

Query: 216 RNLISWNSVLNGYAQLK---SGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
            N  ++  VL   + LK    G +    I     E ++    +++    KCG +DDA+ +
Sbjct: 117 PNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEV 176

Query: 273 FDKMPKRDVVSWANMIDGYA-KLGRVDIARRLFDEM-----PKRD--------VVACNAM 318
           FDKM KRDVV+W +MI G++   G  D   RL  +M     P           V   N++
Sbjct: 177 FDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSL 236

Query: 319 MGGYVRNGYSMK------------ALEIFDNMQC-------------------------- 340
             G   +G+ ++             L+++   QC                          
Sbjct: 237 RHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGA 296

Query: 341 ---------------ELYLHPDDASLVIVLSAI---------AQLGHIDKGVAIHRYLEK 376
                          +L +  DD   VIVLSA+         A L  +  G  +H Y  K
Sbjct: 297 YVVCDFMREALELFCQLLMLKDD---VIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIK 353

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
             F L+   G  L+ MY+KCG I  A++ F +++      + A+I+G   +G  E    +
Sbjct: 354 SGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRM 413

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
            +EM+   I P+  T   +L ACAH   +  G  C      I     +      ++D+  
Sbjct: 414 FLEMQLSGINPEKATLASVLPACAHLAGLHYG-SCSHCYAIICGFTADTMICNALIDMYA 472

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           + G I+ AR + + M  +   V W T++ A
Sbjct: 473 KCGKIDTARKVFDRMH-KRGIVSWNTMIIA 501


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 203/643 (31%), Positives = 338/643 (52%), Gaps = 57/643 (8%)

Query: 25  KTLNDVNQIHARMITTGFI----KNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           +++    ++HA ++ +G +      +HL   LV  F+  P  PL    RY    +   R 
Sbjct: 10  RSVRQAAELHAVLVASGRLLHPPSASHLLNSLVNCFT--PTDPL--HLRYALCLFD--RM 63

Query: 81  KKDPFLWNAIIKT-YSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR-LGLIEEG 138
               FL++  ++  +     P+  L+++  M   GV  D F+   + K C+R    +   
Sbjct: 64  PCSTFLFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLLC 123

Query: 139 LQIHGLLRKVAFGSDL-FLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
             +H    +    S +  + N +I +YV  G    AR+ FD + ++D+V++ ++I G  K
Sbjct: 124 QMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAK 183

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM----PERDLISW 253
            G ++ A  L    P   RN+ISW  +++GY++     + A   F  M     E D ++ 
Sbjct: 184 LGLLDDAWCLLRHSP--ARNVISWTGLISGYSRAGRAAE-AVDCFNSMLSDGIEPDEVTV 240

Query: 254 NSMLHGCV-----------------------------------KCGKMDDAQALFDKMPK 278
             +L  C                                    KCG +  A  +FD + +
Sbjct: 241 IGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGR 300

Query: 279 -RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
            R   SW  MIDGY KLG VD+AR LFD+M  RD+V  N+++ GY+  G   +AL +F  
Sbjct: 301 GRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQ 360

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
           M+    L  D+ ++V +L+A A LG + +G A+H  +E+    ++   G AL+DMY KCG
Sbjct: 361 MR-RHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCG 419

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            +E A  VF+ +    V  W+AMI GLA +G+G+ A +    M+    +P+ +T+  +L 
Sbjct: 420 RVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILT 479

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
           AC+H+ L+ EG L FE MR +H + P ++HYGCM+D+LGR+G ++ A +L+  MPM+PN 
Sbjct: 480 ACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNA 539

Query: 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
           VIW ++LSACR +++ N+    A+HL+ ++    + YV L N++     W DA ++R +M
Sbjct: 540 VIWASILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIYIDSRQWEDASQIRRLM 599

Query: 578 KERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +ER +KK  G S I + G VH+F V D++  Q+ +I  M++ +
Sbjct: 600 EERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEITAMMEEI 642


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 202/611 (33%), Positives = 331/611 (54%), Gaps = 60/611 (9%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           + +CKT+  + QIHA +I +G + +  + +K V+ F          F ++I F  +AF  
Sbjct: 12  IHRCKTIRSLKQIHAHLIASGLLHDEFVLSK-VSEF----------FGKHIGFVDYAFDF 60

Query: 81  KKDPFL------WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
                L      +N +I  Y+    PK A +++  ++ NG   D ++  +VLKAC++   
Sbjct: 61  LNQTDLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLG 120

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           ++EG Q+HG+  K+ F  DL++QN L+  Y  CG          K G             
Sbjct: 121 VQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCG----------KWG------------- 157

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPE-RDLIS 252
                    A  +FD M +R+  ++SW  +++GY  +++GL   A  +F KM    ++ +
Sbjct: 158 --------GAGRVFDEMLVRD--VVSWTGLISGY--VRTGLFDEAINLFLKMDVVPNVAT 205

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           + S+L  C + G +   + +   + KR     +V    ++D Y K   +  AR+LFDE+P
Sbjct: 206 FVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELP 265

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            RD+V+  +++ G V+      +LE+F +MQ    + PD   L  VLSA A LG +D G 
Sbjct: 266 DRDIVSWTSIISGLVQCKQPKDSLELFYDMQIS-GVEPDRIILTSVLSACASLGALDYGR 324

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            +  Y+E+     +   G AL+DMY+KCG IE A+ +F  I + ++  WNA++ GLA+HG
Sbjct: 325 WVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHG 384

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCF-ELMRRIHKLEPELQH 487
            G  A      M    I P+++TF  +L AC H+GLV EG   F +++ +     P L+H
Sbjct: 385 HGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEH 444

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
           YGCM+D+L RAG ++ A   I +MP+ P+ +IW  LLSAC+   N+ + + +  HL+ + 
Sbjct: 445 YGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANGNVELSQEILSHLLELK 504

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
           S +S  YVLLSN++A    W+D  RVR +MK++ ++K PG S IE++G  HEF V D + 
Sbjct: 505 SQDSGVYVLLSNIYATNERWDDVTRVRRLMKDKGIRKFPGSSVIEVDGEAHEFLVGDTNH 564

Query: 608 LQVRDIYYMLD 618
            +  DI+ +L+
Sbjct: 565 SRNEDIHILLN 575


>gi|297728297|ref|NP_001176512.1| Os11g0433100 [Oryza sativa Japonica Group]
 gi|62701919|gb|AAX92992.1| hypothetical protein LOC_Os11g24530 [Oryza sativa Japonica Group]
 gi|77550326|gb|ABA93123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125534237|gb|EAY80785.1| hypothetical protein OsI_35965 [Oryza sativa Indica Group]
 gi|125577016|gb|EAZ18238.1| hypothetical protein OsJ_33779 [Oryza sativa Japonica Group]
 gi|255680048|dbj|BAH95240.1| Os11g0433100 [Oryza sativa Japonica Group]
          Length = 622

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 186/527 (35%), Positives = 305/527 (57%), Gaps = 14/527 (2%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D   W A++  Y+     +EA V+F    D   +V  ++A  +L   +R   ++E   +
Sbjct: 70  RDVVSWTAMVAAYARRGMLQEARVLFD-RPDARRNVVTWTA--LLSGYARARRVDEAEAL 126

Query: 142 -HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
             G+  +     ++   N ++  Y   G +E A  LF++M +RD+ S+N ++ G V+SG+
Sbjct: 127 FEGMAER-----NVVSWNTMLEAYTAVGRVEDASALFNRMPVRDAGSWNILLCGLVRSGS 181

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
           +E AR++F+ MP+R+  ++SW ++++G A+    +  AW +F+ MPER+++SWN+M+ G 
Sbjct: 182 LERARKMFERMPVRD--VMSWTTMISGLAR-NGSVDDAWVLFDAMPERNVVSWNAMISGY 238

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
            +  ++++A  LF KMP RDV SW  MI G+ +   +  AR+LFDEMPKR+V+    MM 
Sbjct: 239 ARNHRIEEALDLFTKMPIRDVASWNIMITGFIQNKDLKSARQLFDEMPKRNVITWTTMMN 298

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           GY++   S  AL++F+ M  +  + P+  + +  L A + L  + +G  +H+ + K    
Sbjct: 299 GYLQCMQSEMALKLFNCMLVQ-GIQPNQVTFLGSLDACSNLAALCEGQQVHQMICKTPSQ 357

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
            +      L+++Y+KCG I  A  VF+   +  +  WN +I   A HG G  A  L   M
Sbjct: 358 FDTFVESTLMNLYAKCGEIRLARNVFDFSMEKDLISWNGIIAAYAHHGFGIEAMHLYKNM 417

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500
           +    +P+D T+ GLL+AC+HAGLV EGL  FE M + + +    +HY C+VD+  RAG 
Sbjct: 418 QENGYKPNDATYVGLLSACSHAGLVDEGLKIFESMVKDNSIVVRDEHYTCLVDLCSRAGR 477

Query: 501 IEAARNLIEDMPMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559
           +E A+ LI    ++P +  +W  LL  C ++ N ++G+  AKHL+  +  N+ +Y LL N
Sbjct: 478 LEDAKRLISWFKIKPTSSTVWSALLGGCNSHGNESIGDLAAKHLLEAEPDNAGTYTLLCN 537

Query: 560 MFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           ++A  G W +A  +RS M  R LKK PGCSWIE+   VH F  RDKS
Sbjct: 538 IYASAGKWKEAAEIRSEMNVRGLKKQPGCSWIEVANKVHVFVSRDKS 584



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 132/267 (49%), Gaps = 26/267 (9%)

Query: 264 GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM-PKRDVVACNAMMGGY 322
           G++ DA+ LFD MP RDVVSW  M+  YA+ G +  AR LFD    +R+VV   A++ GY
Sbjct: 55  GRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDRPDARRNVVTWTALLSGY 114

Query: 323 VRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI-HRYLEKDQFSL 381
            R     +A  +F+ M        +  S   +L A   +G ++   A+ +R   +D  S 
Sbjct: 115 ARARRVDEAEALFEGMA-----ERNVVSWNTMLEAYTAVGRVEDASALFNRMPVRDAGSW 169

Query: 382 NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEME 441
           N      L+    + GS+E A K+FE++    V  W  MI+GLA +G  + A+ L   M 
Sbjct: 170 N-----ILLCGLVRSGSLERARKMFERMPVRDVMSWTTMISGLARNGSVDDAWVLFDAMP 224

Query: 442 RLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP--ELQHYGCMVDILGRAG 499
               E + +++  +++  A    ++E L  F  M       P  ++  +  M+    +  
Sbjct: 225 ----ERNVVSWNAMISGYARNHRIEEALDLFTKM-------PIRDVASWNIMITGFIQNK 273

Query: 500 HIEAARNLIEDMPMEPNDVIWRTLLSA 526
            +++AR L ++MP + N + W T+++ 
Sbjct: 274 DLKSARQLFDEMP-KRNVITWTTMMNG 299



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 106/227 (46%), Gaps = 27/227 (11%)

Query: 292 AKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASL 351
           A  GRV  ARRLFD MP RDVV+  AM+  Y R G   +A  +FD         PD    
Sbjct: 52  AAAGRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFD--------RPDARRN 103

Query: 352 VI----VLSAIAQLGHIDKGVAIHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVF 406
           V+    +LS  A+   +D+  A+   + E++  S N      +++ Y+  G +E+A  +F
Sbjct: 104 VVTWTALLSGYARARRVDEAEALFEGMAERNVVSWN-----TMLEAYTAVGRVEDASALF 158

Query: 407 EQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVK 466
            ++       WN ++ GL   G  E A  +    ER+ +  D +++T +++  A  G V 
Sbjct: 159 NRMPVRDAGSWNILLCGLVRSGSLERARKMF---ERMPVR-DVMSWTTMISGLARNGSVD 214

Query: 467 EGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPM 513
           +  + F+ M      E  +  +  M+    R   IE A +L   MP+
Sbjct: 215 DAWVLFDAMP-----ERNVVSWNAMISGYARNHRIEEALDLFTKMPI 256



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 157/369 (42%), Gaps = 68/369 (18%)

Query: 37  MITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSH 96
           ++ TGFI+N  L +                 AR +F +      K++   W  ++  Y  
Sbjct: 264 IMITGFIQNKDLKS-----------------ARQLFDEM----PKRNVITWTTMMNGYLQ 302

Query: 97  GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFL 156
            +  + AL +F  ML  G+  ++ +    L ACS L  + EG Q+H ++ K     D F+
Sbjct: 303 CMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQMICKTPSQFDTFV 362

Query: 157 QNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRER 216
           ++ L++LY +CG +  AR +FD    +D +S+N +I  Y   G    A  L+ +M     
Sbjct: 363 ESTLMNLYAKCGEIRLARNVFDFSMEKDLISWNGIIAAYAHHGFGIEAMHLYKNMQ---- 418

Query: 217 NLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM 276
                    NGY                  + +  ++  +L  C   G +D+   +F+ M
Sbjct: 419 --------ENGY------------------KPNDATYVGLLSACSHAGLVDEGLKIFESM 452

Query: 277 PKRDVV-----SWANMIDGYAKLGRVDIARRL---FDEMPKRDVVACNAMMGGYVRNG-Y 327
            K + +      +  ++D  ++ GR++ A+RL   F   P    V  +A++GG   +G  
Sbjct: 453 VKDNSIVVRDEHYTCLVDLCSRAGRLEDAKRLISWFKIKPTSSTV-WSALLGGCNSHGNE 511

Query: 328 SMKALEIFDNMQCELYLHPDDASLVIVLSAI-AQLGHIDKGVAIHRYLEKDQFSLNGKHG 386
           S+  L     ++ E    PD+A    +L  I A  G   +   I    E +   L  + G
Sbjct: 512 SIGDLAAKHLLEAE----PDNAGTYTLLCNIYASAGKWKEAAEIRS--EMNVRGLKKQPG 565

Query: 387 VALIDMYSK 395
            + I++ +K
Sbjct: 566 CSWIEVANK 574


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 175/503 (34%), Positives = 293/503 (58%), Gaps = 32/503 (6%)

Query: 148 VAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK-SGNIESARE 206
           V   SD+   N  I+ +VR   LE AR +F+KM +R +V++N+M+ GY K +G ++ A E
Sbjct: 67  VDTASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHE 126

Query: 207 LFDSMP-----------------------------IRERNLISWNSVLNGYAQLKSGLQF 237
           LFD +P                             +  +++ SWN++++G+AQ    +Q 
Sbjct: 127 LFDKIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQ-NGQMQK 185

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
           A+ +F  MPE++ +SW++M+ G V+ G ++ A+ L+  +  + VV    M+ GY K G+V
Sbjct: 186 AFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKV 245

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
           ++A R+F  M  +++V  N+M+ GYV N  +   L++F  M  E  + P+  SL  VL  
Sbjct: 246 ELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTM-IESRVRPNPLSLSSVLLG 304

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
            + L  +  G  +H+ + K   S +     +LI MY KCG +++A K+F ++    V  W
Sbjct: 305 CSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITW 364

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
           NAMI+G A HG G  A  L  +M   +++PD ITF  ++ AC HAG V  G+  F+ M++
Sbjct: 365 NAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKK 424

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
              +E +  HY C++D+LGRAG ++ A +LI++MP  P+  I+ TLL ACR ++NL++ E
Sbjct: 425 EFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAE 484

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVV 597
             A++L+ +D ++++ YV L+N++A    W+   +VR MMKE N+ K+PG SWIE++ V 
Sbjct: 485 FAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVT 544

Query: 598 HEFFVRDKSRLQVRDIYYMLDNM 620
           HEF   D+   ++  I+  L+ +
Sbjct: 545 HEFRSSDRLHPELTSIHKKLNEL 567



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 105/208 (50%), Gaps = 18/208 (8%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           K+   WN++I  Y      ++ L +F  M+++ V  +  S S VL  CS L  +  G Q+
Sbjct: 258 KNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQM 317

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H L+ K     D      LIS+Y +CG L+ A +LF +M  +D +++N+MI GY + G  
Sbjct: 318 HQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAG 377

Query: 202 ESARELFDSM--PIRERNLISWNSVL-----NGYAQLKSGLQFAWQIFEKMPERDLISWN 254
             A  LFD M     + + I++ +V+      G+  L  G+Q+    F+ M +   I   
Sbjct: 378 RKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDL--GVQY----FKSMKKEFGIEAK 431

Query: 255 SMLHGCV-----KCGKMDDAQALFDKMP 277
            + + CV     + G++D+A +L  +MP
Sbjct: 432 PVHYTCVIDLLGRAGRLDEAVSLIKEMP 459


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 186/497 (37%), Positives = 284/497 (57%), Gaps = 10/497 (2%)

Query: 120 FSASLVLKACSRLGLIEEGLQI-HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD 178
           F  + ++  C R G I+  L++ HG+  K    + +   + LI +      +  A QLFD
Sbjct: 62  FPLNKIIARCVRSGDIDGALRVFHGMRAK----NTITWNSLLIGISKDPSRMMEAHQLFD 117

Query: 179 KMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFA 238
           ++   D+ SYN M+  YV++ N E A+  FD MP ++    SWN+++ GYA+ +  ++ A
Sbjct: 118 EIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKD--AASWNTMITGYAR-RGEMEKA 174

Query: 239 WQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVD 298
            ++F  M E++ +SWN+M+ G ++CG ++ A   F   P R VV+W  MI GY K  +V+
Sbjct: 175 RELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVE 234

Query: 299 IARRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
           +A  +F +M   +++V  NAM+ GYV N      L++F  M  E  + P+ + L   L  
Sbjct: 235 LAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAM-LEEGIRPNSSGLSSALLG 293

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
            ++L  +  G  IH+ + K     +     +LI MY KCG + +A K+FE ++   V  W
Sbjct: 294 CSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAW 353

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
           NAMI+G A HG  + A  L  EM    I PD ITF  +L AC HAGLV  G+  FE M R
Sbjct: 354 NAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVR 413

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
            +K+EP+  HY CMVD+LGRAG +E A  LI  MP  P+  ++ TLL ACR ++N+ + E
Sbjct: 414 DYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAE 473

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVV 597
             A+ L+ ++S N++ YV L+N++A    W D  RVR  MKE N+ K+PG SWIE+   V
Sbjct: 474 FAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKV 533

Query: 598 HEFFVRDKSRLQVRDIY 614
           H F   D+   ++  I+
Sbjct: 534 HHFRSSDRIHPELDSIH 550



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 109/250 (43%), Gaps = 39/250 (15%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           K+   WNA+I  Y     P++ L +F  ML+ G+  +    S  L  CS L  ++ G QI
Sbjct: 247 KNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQI 306

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H ++ K    +D+     LIS+Y +CG L  A +LF+ M  +D V++N+MI GY + GN 
Sbjct: 307 HQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNA 366

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
           + A  LF  M                               +     D I++ ++L  C 
Sbjct: 367 DKALCLFREM------------------------------IDNKIRPDWITFVAVLLACN 396

Query: 262 KCGKMDDAQALFDKM-------PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
             G ++   A F+ M       P+ D   +  M+D   + G+++ A +L   MP R   A
Sbjct: 397 HAGLVNIGMAYFESMVRDYKVEPQPD--HYTCMVDLLGRAGKLEEALKLIRSMPFRPHAA 454

Query: 315 CNAMMGGYVR 324
               + G  R
Sbjct: 455 VFGTLLGACR 464



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 109/249 (43%), Gaps = 16/249 (6%)

Query: 9   QPCNSTQSTLLLLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLT 65
           +P +S  S+ LL   C  L+ +    QIH  +  +    +    T L++ +    C  L 
Sbjct: 281 RPNSSGLSSALL--GCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCK--CGELG 336

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
           +      +K     +KKD   WNA+I  Y+   +  +AL +F  M+DN +  D  +   V
Sbjct: 337 DA-----WKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAV 391

Query: 126 LKACSRLGLIEEGLQ-IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           L AC+  GL+  G+     ++R            C++ L  R G LE A +L   M  R 
Sbjct: 392 LLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRP 451

Query: 185 SVS-YNSMIDGYVKSGNIESARELFDS-MPIRERNLISWNSVLNGYAQLKSGLQFAWQIF 242
             + + +++       N+E A    +  + +  +N   +  + N YA  K+  +   ++ 
Sbjct: 452 HAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYAS-KNRWEDVARVR 510

Query: 243 EKMPERDLI 251
           ++M E +++
Sbjct: 511 KRMKESNVV 519


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 187/546 (34%), Positives = 302/546 (55%), Gaps = 44/546 (8%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           WN+++  Y   L P++A  +F  M D  +     S + ++    + G I+E  ++  L+ 
Sbjct: 51  WNSMVAGYFANLMPRDARKLFDEMPDRNI----ISWNGLVSGYMKNGEIDEARKVFDLMP 106

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN----------------- 189
           +     ++     L+  YV  G ++ A  LF KM  ++ VS+                  
Sbjct: 107 E----RNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACK 162

Query: 190 --------------SMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL 235
                         SMI G  K G ++ ARE+FD M   ER++I+W +++ GY Q  + +
Sbjct: 163 LYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMS--ERSVITWTTMVTGYGQ-NNRV 219

Query: 236 QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG 295
             A +IF+ MPE+  +SW SML G V+ G+++DA+ LF+ MP + V++   MI G  + G
Sbjct: 220 DDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKG 279

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
            +  ARR+FD M +R+  +   ++  + RNG+ ++AL++F  MQ +  + P   +L+ +L
Sbjct: 280 EIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQ-GVRPTFPTLISIL 338

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
           S  A L  +  G  +H  L + QF ++      L+ MY KCG +  +  +F++     + 
Sbjct: 339 SVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDII 398

Query: 416 HWNAMINGLAIHGLGELAFDLLMEME-RLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
            WN++I+G A HGLGE A  +  EM    S +P+++TF   L+AC++AG+V+EGL  +E 
Sbjct: 399 MWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYES 458

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534
           M  +  ++P   HY CMVD+LGRAG    A  +I+ M +EP+  +W +LL ACR +  L+
Sbjct: 459 MESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLD 518

Query: 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           V E  AK LI ++  NS +Y+LLSNM+A  G W D   +R +MK R ++K PGCSW E+E
Sbjct: 519 VAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVE 578

Query: 595 GVVHEF 600
             VH F
Sbjct: 579 NKVHAF 584



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 174/340 (51%), Gaps = 57/340 (16%)

Query: 187 SYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGY-AQLKSGLQFAWQIFEKM 245
           + N  I    + G I  AR+LFDS     +++ SWNS++ GY A L    + A ++F++M
Sbjct: 19  TANVRITHLSRIGKIHEARKLFDS--CDSKSISSWNSMVAGYFANLMP--RDARKLFDEM 74

Query: 246 PERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFD 305
           P+R++ISWN ++ G +K G++D+A+ +FD MP+R+VVSW  ++ GY   G+VD+A  LF 
Sbjct: 75  PDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFW 134

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELY-LHPDDASLVIVLSAIAQLGHI 364
           +MP+++ V+   M+ G++++G    A        C+LY + PD  +       IA+   I
Sbjct: 135 KMPEKNKVSWTVMLIGFLQDGRIDDA--------CKLYEMIPDKDN-------IARTSMI 179

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
                               HG+       K G ++ A ++F+++ + SV  W  M+ G 
Sbjct: 180 --------------------HGLC------KEGRVDEAREIFDEMSERSVITWTTMVTGY 213

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
             +   + A  +   M     E  ++++T +L      G +++    FE+M     ++P 
Sbjct: 214 GQNNRVDDARKIFDVMP----EKTEVSWTSMLMGYVQNGRIEDAEELFEVM----PVKPV 265

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
           +     M+  LG+ G I  AR + + M  E ND  W+T++
Sbjct: 266 IA-CNAMISGLGQKGEIAKARRVFDSMK-ERNDASWQTVI 303



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 99/194 (51%), Gaps = 18/194 (9%)

Query: 8   NQPCNSTQSTLL-LLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTP 63
            Q    T  TL+ +L  C +L  ++   Q+HA+++   F  + ++ + L+  +    C  
Sbjct: 324 KQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIK--CGE 381

Query: 64  LTEFARYIFFKYHAFREKKDPFLWNAIIKTY-SHGLDPKEALVMFCLM-LDNGVSVDKFS 121
           L + ++ IF ++ +    KD  +WN+II  Y SHGL  +EAL +FC M L      ++ +
Sbjct: 382 LVK-SKLIFDRFPS----KDIIMWNSIISGYASHGLG-EEALKVFCEMPLSGSTKPNEVT 435

Query: 122 ASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQN--CLISLYVRCGYLEFARQLFDK 179
               L ACS  G++EEGL+I+  +  V FG      +  C++ +  R G    A ++ D 
Sbjct: 436 FVATLSACSYAGMVEEGLKIYESMESV-FGVKPITAHYACMVDMLGRAGRFNEAMEMIDS 494

Query: 180 MGIR-DSVSYNSMI 192
           M +  D+  + S++
Sbjct: 495 MTVEPDAAVWGSLL 508


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 214/668 (32%), Positives = 345/668 (51%), Gaps = 58/668 (8%)

Query: 1   MFVSANYNQPCNSTQSTLL--LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSS 58
           M +SA      +S Q T+   L     +L+   Q HA ++ TG   +THL TKL++ +++
Sbjct: 1   MSLSAQALALLDSVQHTIFNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYAN 60

Query: 59  SPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVD 118
           + C     FA            + + F ++ +I  +S       AL  F  ML  G+  D
Sbjct: 61  NMC-----FADATLVL--DLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPD 113

Query: 119 KFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD 178
                  +KAC+ L  ++   Q+HG+     F SD F+Q+ L+ +Y++C  +  A ++FD
Sbjct: 114 NRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFD 173

Query: 179 KMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGL- 235
           +M   D VS+++++  Y + G ++ A+ LF  M     + NLISWN ++ G+    SGL 
Sbjct: 174 RMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNH--SGLY 231

Query: 236 QFAWQIFEKM------PERDLIS-------------WNSMLHG-----------CV---- 261
             A  +F  M      P+   IS                ++HG           CV    
Sbjct: 232 SEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSAL 291

Query: 262 -----KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR----DV 312
                KC    +   +FD+M   DV S    I G ++ G+V+ + RLF ++  +    +V
Sbjct: 292 IDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNV 351

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           V+  +M+    +NG  ++ALE+F  MQ    + P+  ++  +L A   +  +  G A H 
Sbjct: 352 VSWTSMIACCSQNGRDIEALELFREMQIA-GVKPNSVTIPCLLPACGNIAALMHGKAAHC 410

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
           +  +   S +   G ALIDMY+KCG I+ +   F+ I   ++  WNA+I G A+HG  + 
Sbjct: 411 FSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKE 470

Query: 433 AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV 492
           A ++   M+R   +PD I+FT +L+AC+ +GL +EG   F  M   + +E  ++HY CMV
Sbjct: 471 AMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMV 530

Query: 493 DILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552
            +L RAG +E A  +I  MP+ P+  +W  LLS+CR + N+++GE  A+ L  ++ SN  
Sbjct: 531 TLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPG 590

Query: 553 SYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRD 612
           +Y+LLSN++A  GMWN+  RVR MMK + L+K PGCSWIE++  VH     DKS  Q+  
Sbjct: 591 NYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQ 650

Query: 613 IYYMLDNM 620
           I   LD +
Sbjct: 651 IIEKLDKL 658


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 199/601 (33%), Positives = 316/601 (52%), Gaps = 69/601 (11%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           L+    + + + QIH ++       ++ + T+ ++S SS       ++A  IF ++    
Sbjct: 48  LIHASNSTHKLRQIHGQLYRCNVFSSSRVVTQFISSCSSLNSV---DYAISIFQRF---- 100

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           E K+ +L+NA+I+  +     + ++  F LML   +S D+ +   VLK+ + L     G 
Sbjct: 101 ELKNSYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGR 160

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
            +H                        CG L+F  +        DS    S++D YVK  
Sbjct: 161 ALH------------------------CGILKFGLEF-------DSFVRVSLVDMYVKVE 189

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
            + SA ++FD  P          SV NG                      ++ WN ++HG
Sbjct: 190 ELGSALKVFDESP---------ESVKNG---------------------SVLIWNVLIHG 219

Query: 260 CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM 319
             + G +  A  LFD MPK+D  SW ++I+G+ K+G +  A+ LF +MP+++VV+   M+
Sbjct: 220 YCRMGDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMV 279

Query: 320 GGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF 379
            G+ +NG   KALE F  M  E    P+D ++V  LSA A++G +D G+ IH YL  + F
Sbjct: 280 NGFSQNGDPEKALETFFCM-LEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGF 338

Query: 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLME 439
            LN   G AL+DMY+KCG+IE+A KVF + ++  +  W+ MI G AIHG    A      
Sbjct: 339 KLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEW 398

Query: 440 MERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG 499
           M+    +PD + F  +LNAC+H+G V EGL  F+ MRR + +EP ++HY  +VD+LGRAG
Sbjct: 399 MKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAG 458

Query: 500 HIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559
            ++ A   I  MP+ P+ V+W  L  ACR ++N+ + E  +K L+ ++  +  SYV LSN
Sbjct: 459 RLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSN 518

Query: 560 MFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDN 619
            +A +G W+DA RVR  M++    K PG S+IE++  +H F   D +  +  +IY  LD 
Sbjct: 519 AYASVGRWDDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDE 578

Query: 620 M 620
           +
Sbjct: 579 I 579


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 202/650 (31%), Positives = 340/650 (52%), Gaps = 69/650 (10%)

Query: 25  KTLNDVNQIHARMITTGFI-----KNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAF- 78
           +T+    ++HAR+ T+G +        HL   LV      P         ++ +  H F 
Sbjct: 10  RTVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPL--------HLRYALHLFD 61

Query: 79  REKKDPFLWNAIIKTYSH-GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
           R     FL++  ++  S  G DP    ++F  M   GV  D F+   + K CS       
Sbjct: 62  RMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFK-CSSSSSRPH 120

Query: 138 GLQIHGLLRKVAFGSDL-----FLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
            L +  +L      + L     F+ N LI +Y+R G    AR+ FD++ ++D+V++  +I
Sbjct: 121 SLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLI 180

Query: 193 DGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER---- 248
            G  K G +   + L    P+R  ++ISW S++  Y++     + A   F+ M       
Sbjct: 181 SGLAKMGMLCDTQLLLSQAPVR--DVISWTSLIAAYSRANRARE-AVGCFKTMLSHGIAP 237

Query: 249 DLISWNSMLHGCVK-----------------------------------CGKMDDAQALF 273
           D ++  ++L  C K                                   CG    AQ +F
Sbjct: 238 DEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVF 297

Query: 274 DKM---PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMK 330
           D +   P+    SW  +IDGY K G VD+AR LFDEM  RD++  N+MM GY+ +G   +
Sbjct: 298 DALGRGPRPQ--SWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLRE 355

Query: 331 ALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI 390
           AL +F +M+    L  D+ ++V +L+A A LG + +G A+H  +E+     +   G AL+
Sbjct: 356 ALLLFMSMR-RHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALL 414

Query: 391 DMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
           DMY KCG ++ A  VF+++    V  W AMI GLA +G+G+ A +   +M     +P+ +
Sbjct: 415 DMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSV 474

Query: 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIED 510
           ++  +L AC+H+ L+ EG L F+ MR ++ + P+++HYGCM+D+LGR+G ++ A +L++ 
Sbjct: 475 SYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKT 534

Query: 511 MPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDA 570
           MP++PN VIW ++LSACR ++++++ +  A+HL+ ++      YV L N++     W +A
Sbjct: 535 MPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENA 594

Query: 571 RRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            ++R +M+ER +KK  G S I + G VH+F V DKS  ++ +I  ML+ +
Sbjct: 595 SKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEI 644


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 215/683 (31%), Positives = 339/683 (49%), Gaps = 86/683 (12%)

Query: 16  STLLLLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           +T+ LL  CK+ + +    +IH   +    + + ++   ++  ++   C  + E AR +F
Sbjct: 246 TTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYA--KCGSIHE-AREVF 302

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL 132
            K     E K    W  II  Y+     + A  +F  M   GV  ++ +   VL A S  
Sbjct: 303 DKM----ETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGP 358

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
             ++ G  +H  +      SDL +   L+ +Y +CG  +  RQ+F+K+  RD +++N+MI
Sbjct: 359 AALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMI 418

Query: 193 DGYVKSGNIESARELFDSM------PIRERNLISWNSVLNGYA----------QLKSGLQ 236
            G  + GN E A E++  M      P +   +I  N+ +N  A           +K G  
Sbjct: 419 GGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFM 478

Query: 237 F--------------------AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM 276
           F                    A  +F KM  +D+ISW +M+ G  K G   +A A+F  M
Sbjct: 479 FDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDM 538

Query: 277 ------PKR-------------DVVSWA--------------------NMIDGYAKLGRV 297
                 P R               + W                      +++ Y+  G V
Sbjct: 539 QQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSV 598

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
             AR++FD M +RD+VA NAM+GGY  +    +AL++FD +Q E  L PD  + + +L+A
Sbjct: 599 KDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQ-EEGLKPDKVTYINMLNA 657

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
            A  G ++    IH  + KD +  +   G AL+  Y+KCGS  +A+ VF+++   +V  W
Sbjct: 658 CANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISW 717

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
           NA+I G A HG G+    L   M+   I+PD +TF  LL+AC+HAGL++EG   F  M R
Sbjct: 718 NAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSR 777

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
              + P ++HYGCMVD+LGRAG ++    LI+ MP + N  IW  LL ACR + N+ V E
Sbjct: 778 DFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAE 837

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVV 597
             A+  + +D  N++ YV LS+M+A  GMW+ A ++R +M++R + K PG SWIE+   +
Sbjct: 838 RAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKL 897

Query: 598 HEFFVRDKSRLQVRDIYYMLDNM 620
           H F   D+S  +   IY  LD +
Sbjct: 898 HYFVAEDRSHPESEKIYAELDKL 920



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 168/669 (25%), Positives = 295/669 (44%), Gaps = 106/669 (15%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L++C  + D+    ++H  +I    + + +    L+  +    C  + E AR ++ K +
Sbjct: 147 MLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQ--CGSIEE-ARQVWNKLN 203

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
               ++    WNA++  Y      +EAL +   M  +G+++ + +   +L +C     +E
Sbjct: 204 --HTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALE 261

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G +IH    K     D+ + NC++++Y +CG +  AR++FDKM  +  VS+  +I GY 
Sbjct: 262 CGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYA 321

Query: 197 KSGNIESARELFDSMPIRE--RNLISWNSVLN---GYAQLKSGLQFAWQIFEKMPERDLI 251
             G+ E A E+F  M       N I++ +VLN   G A LK G      I     E DL 
Sbjct: 322 DCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLA 381

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
              +++    KCG   D + +F+K+  RD+++W  MI G A+ G  +             
Sbjct: 382 VGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWE------------- 428

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
                             +A EI+  MQ E  + P+  + VI+L+A      +  G  IH
Sbjct: 429 ------------------EASEIYHQMQREGMM-PNKITYVILLNACVNPTALHWGREIH 469

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
             + KD F  +     ALI MY++CGSI++A  +F ++    +  W AMI GLA  GLG 
Sbjct: 470 SRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGA 529

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK------LEPEL 485
            A  +  +M++  ++P+ +T+T +LNAC+    +  G       RRIH+      L  + 
Sbjct: 530 EALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWG-------RRIHQQVIEAGLATDA 582

Query: 486 QHYGCMVDILGRAGHIEAARNLIEDMP--------------------------------- 512
                +V++    G ++ AR + + M                                  
Sbjct: 583 HVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEE 642

Query: 513 -MEPNDVIWRTLLSACRNYENLNVGEPVAKHLI--GMDSSNSSSYVLLSNMFAGLGMWND 569
            ++P+ V +  +L+AC N  +L   + +   ++  G  S  S    L+S  +A  G ++D
Sbjct: 643 GLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVST-YAKCGSFSD 701

Query: 570 ARRVRSMMKERNLKK----LPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDS 625
           A  V   M +RN+      + GC+       V + F R K      DI   +       S
Sbjct: 702 ALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFV-------S 754

Query: 626 VATSCTHYG 634
           + ++C+H G
Sbjct: 755 LLSACSHAG 763


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 202/650 (31%), Positives = 340/650 (52%), Gaps = 69/650 (10%)

Query: 25  KTLNDVNQIHARMITTGFI-----KNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAF- 78
           +T+    ++HAR+ T+G +        HL   LV      P         ++ +  H F 
Sbjct: 10  RTVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPL--------HLRYALHLFD 61

Query: 79  REKKDPFLWNAIIKTYSH-GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
           R     FL++  ++  S  G DP    ++F  M   GV  D F+   + K CS       
Sbjct: 62  RMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFK-CSSSSSRPH 120

Query: 138 GLQIHGLLRKVAFGSDL-----FLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
            L +  +L      + L     F+ N LI +Y+R G    AR+ FD++ ++D+V++  +I
Sbjct: 121 SLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLI 180

Query: 193 DGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER---- 248
            G  K G +   + L    P+R  ++ISW S++  Y++     + A   F+ M       
Sbjct: 181 SGLAKMGMLCDTQLLLSQAPVR--DVISWTSLIAAYSRANRARE-AVGCFKTMLSHGIAP 237

Query: 249 DLISWNSMLHGCVK-----------------------------------CGKMDDAQALF 273
           D ++  ++L  C K                                   CG    AQ +F
Sbjct: 238 DEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVF 297

Query: 274 DKM---PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMK 330
           D +   P+    SW  +IDGY K G VD+AR LFDEM  RD++  N+MM GY+ +G   +
Sbjct: 298 DALGRGPRPQ--SWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLRE 355

Query: 331 ALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI 390
           AL +F +M+    L  D+ ++V +L+A A LG + +G A+H  +E+     +   G AL+
Sbjct: 356 ALLLFMSMR-RHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALL 414

Query: 391 DMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
           DMY KCG ++ A  VF+++    V  W AMI GLA +G+G+ A +   +M     +P+ +
Sbjct: 415 DMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSV 474

Query: 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIED 510
           ++  +L AC+H+ L+ EG L F+ MR ++ + P+++HYGCM+D+LGR+G ++ A +L++ 
Sbjct: 475 SYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKT 534

Query: 511 MPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDA 570
           MP++PN VIW ++LSACR ++++++ +  A+HL+ ++      YV L N++     W +A
Sbjct: 535 MPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENA 594

Query: 571 RRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            ++R +M+ER +KK  G S I + G VH+F V DKS  ++ +I  ML+ +
Sbjct: 595 SKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEI 644


>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 646

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 203/625 (32%), Positives = 326/625 (52%), Gaps = 17/625 (2%)

Query: 7   YNQPCN--STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPL 64
           +N  CN   T   L +L  C +   + Q+ A +  +G   N    ++L+A F +    P 
Sbjct: 22  WNTNCNLVVTHPLLSVLESCASFRRLLQLQALLTVSGLASNRFPASRLLA-FCALSDPPR 80

Query: 65  TEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL 124
              A  +  +     E  + ++   +++ +     P  AL +F  +L + ++VD  +   
Sbjct: 81  LAHAAAVLAQ---CTEGPNAYMLATMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVF 137

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAF-GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183
            +KA +      E   IH +  K  F G  +   N L+ +Y     L  AR+LFD+M  R
Sbjct: 138 AVKAAATSSSPTEA--IHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADR 195

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRER------NLISWNSVLNGYAQLKSGLQF 237
           D VS+ ++IDGY + G  + A  +F  M + E        L++  S       L  G   
Sbjct: 196 DVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTV 255

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
              I E      +   N+++    KCG +  A+ +FD MP +DV SW +M+  YAK G +
Sbjct: 256 HQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDL 315

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
           + A +LF E+P R+VV+ + M+  Y       +A+ IF++M     + P DA+LV VLSA
Sbjct: 316 ENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDM-IAAGVEPIDATLVSVLSA 374

Query: 358 IAQLGHIDKGVAIH-RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
            AQL  +D G  ++  Y+   +  L      A IDM++KCG +  A ++F  +ED +V  
Sbjct: 375 CAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVS 434

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           WN MI    +HG  E A  L  E +   I PD+ T+ G+L+AC+H GLV EG   F+ M+
Sbjct: 435 WNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMK 494

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
            ++ +EP  +HY CM+D+LG+ G ++ A  +   MP+  ++  W  LL+ACR + N+ +G
Sbjct: 495 IVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGNVEIG 554

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
           +  A  L G+D S+S  YVL+S ++A    W   + +R++M++R +KK PGCS IE++G 
Sbjct: 555 KCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIEVDGK 614

Query: 597 VHEFFVRDKSRLQVRDIYYMLDNMW 621
            HEF V D S +   DIY  L N++
Sbjct: 615 CHEFLVADVSHVHSEDIYAALGNIY 639


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 188/504 (37%), Positives = 294/504 (58%), Gaps = 16/504 (3%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +LK C     I E  +IH  + K +     FL   ++ +       E+A  LF ++   +
Sbjct: 20  ILKNCPN---IVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKRVADPN 76

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSM--------PIRERNLISWNSVLNGYAQLKS--- 233
           +  YN+MI  Y  +     A  ++  M        PI      ++  V+   A L     
Sbjct: 77  AFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKF-TFPFVVKSCAGLMCYDL 135

Query: 234 GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAK 293
           G Q    +F+   + + +  NS++   VKC  +DDA  +F++M +RD VSW  +I G+ +
Sbjct: 136 GKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVR 195

Query: 294 LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI 353
           LG++  AR +F+EM  + + +  A++ GY R G    ALE F  MQ  + + PD+ SLV 
Sbjct: 196 LGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQM-VGIEPDEISLVS 254

Query: 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
           VL A AQLG ++ G  IH Y +K  F  N     ALI+MY+KCGSI+   ++F+Q+ +  
Sbjct: 255 VLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERD 314

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE 473
           V  W+ MI GLA HG    A +L  EM++  IEP+ ITF GLL+ACAHAGL+ EGL  FE
Sbjct: 315 VISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFE 374

Query: 474 LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENL 533
            M+R + +EP ++HYGC+V++LG +G ++ A  LI+ MPM+P+  IW +LLS+CR++ NL
Sbjct: 375 SMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNL 434

Query: 534 NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
            +     +HL+ ++ +++ +YVLLSN++A LG W+   R+R +M+ +++KK PGCS IE+
Sbjct: 435 EIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEV 494

Query: 594 EGVVHEFFVRDKSRLQVRDIYYML 617
           + +V EF   D S+   + IY +L
Sbjct: 495 DNMVQEFASGDDSKPFSKAIYRVL 518



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 131/461 (28%), Positives = 244/461 (52%), Gaps = 62/461 (13%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           +L+ C  + ++ +IHA ++     +++ L TK+V   +       TE+A  +F      +
Sbjct: 20  ILKNCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHHA---ETEYANLLF------K 70

Query: 80  EKKDP--FLWNAIIKTYSHGLDPKEALVMFCLML-----DNGVSVDKFSASLVLKACSRL 132
              DP  FL+NA+I+ Y H      A+ ++  ML     +N +  DKF+   V+K+C+ L
Sbjct: 71  RVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGL 130

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
              + G Q+HG + K    S+  ++N L+ +YV+C  L+ A ++F++M  RD+VS+N++I
Sbjct: 131 MCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLI 190

Query: 193 DGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ER 248
            G+V+ G +  AR +F+ M  +++ + SW ++++GYA++      A + F +M     E 
Sbjct: 191 SGHVRLGQMRRARAIFEEM--QDKTIFSWTAIVSGYARIGCYAD-ALEFFRRMQMVGIEP 247

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLF 304
           D IS  S+L  C + G ++  + +     K    R++     +I+ YAK G +D  RRLF
Sbjct: 248 DEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLF 307

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
           D+M +RDV++ + M+ G   +G + +A+E+F  MQ +  + P+  + V +LSA A  G +
Sbjct: 308 DQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQ-KAKIEPNIITFVGLLSACAHAGLL 366

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
           ++G+   RY E  +   N                          IE G V+H+  ++N L
Sbjct: 367 NEGL---RYFESMKRDYN--------------------------IEPG-VEHYGCLVNLL 396

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC-AHAGL 464
            + G  + A +L+   +++ ++PD   +  LL++C +H+ L
Sbjct: 397 GLSGRLDQALELI---KKMPMKPDSAIWGSLLSSCRSHSNL 434


>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
 gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
          Length = 690

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 193/596 (32%), Positives = 315/596 (52%), Gaps = 43/596 (7%)

Query: 27  LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFL 86
           L  V ++HA+++  G  ++    +KL+AS++     P                      L
Sbjct: 117 LRHVQELHAQVLRQGLHRDPRAASKLIASYALLRRVPACRCVFSAAAAPPFAPSTA--LL 174

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
            N +++ Y+    P  AL +F  M       D F+ S ++KA +  G+            
Sbjct: 175 ANTLLRAYALNSLPHAALAVFVDMPLR--QRDTFTYSFLIKALATAGVTP---------- 222

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
                             VR  +      +F    + D+   N++ID Y K+  +  A++
Sbjct: 223 ------------------VRAAHT----HVFKLGSVEDTFVGNALIDAYSKNDGLSDAKK 260

Query: 207 LFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKM 266
           +FD M    R+++SWN+ +    + K  +  A  +F++MPE+D +SWN+ML G  K G+ 
Sbjct: 261 VFDEM--TTRDVVSWNTAMAAMVR-KGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEA 317

Query: 267 DDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNG 326
           ++A  LF +MP R+VVSW+ ++  Y K G +++AR +FD+MP +++V    M+    + G
Sbjct: 318 EEAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKG 377

Query: 327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG 386
              +A  +F  M+ E  +  D  ++V +L+A A+ G +  G  IHR++ + +   +    
Sbjct: 378 LVGEAGRLFTEMK-EAAIELDVVAVVSILAACAESGCLALGKRIHRHVRQRKLGRSTLVC 436

Query: 387 VALIDMYSKCGSIENAIKVF--EQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS 444
            AL+DM+ KCG +  A  +F  E +E  SV  WN +I G A+HG GE A +L  +M++  
Sbjct: 437 NALMDMFCKCGCVNRADYIFDTEIVEKDSVS-WNIIIGGFAMHGHGEKALNLFTQMKQQG 495

Query: 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504
             PD +T   +L+AC H GLV+EG   F  M   + ++PE++HYGCMVD+LGR G I+ A
Sbjct: 496 FHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPEIEHYGCMVDLLGRGGLIKEA 555

Query: 505 RNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL 564
            ++I+ MP EPN+VIW +LLSACR ++N+   E  A  L  +  SN+ +Y +LSN++A  
Sbjct: 556 VDMIKSMPWEPNEVIWGSLLSACRLHKNVEYAELAANELSNLQPSNAGNYAVLSNIYAEA 615

Query: 565 GMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           G W+D  + R  MK    +K  G SWIEL+   HEF V D+   +   I  M+D +
Sbjct: 616 GKWSDMAKARVQMKGTGSQKTAGSSWIELDEAFHEFTVGDRKHPESDQISDMIDRL 671


>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
 gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
          Length = 705

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 207/630 (32%), Positives = 334/630 (53%), Gaps = 55/630 (8%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LLR+C  +    Q+H+  + TG   +  ++ +LV+ +S      L   AR +F     F 
Sbjct: 44  LLRQCNGIQHSKQVHSATVVTGAYCSAFVSARLVSIYSR---YGLVSDARKVFGS-APFE 99

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
              +  LWN+II+   +     EAL ++  M + GV  D F+  L+L+A S LG      
Sbjct: 100 CYSNFLLWNSIIRANVYHGYCIEALQLYGKMRNYGVLGDGFTFPLLLRASSNLGAFNMCK 159

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
            +H  + +  F + L + N LI +Y +   ++ AR++FDKM I+  VS+N+M+ GY  + 
Sbjct: 160 NLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARKVFDKMRIKSVVSWNTMVSGYAYNY 219

Query: 200 NIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER--------- 248
           ++  A  +F  M +   E N ++W S+L+ +A+    L+    +F KM  +         
Sbjct: 220 DVNGASRMFHQMELEGVEPNPVTWTSLLSSHARCGH-LEETMVLFCKMRMKGVGPTAEML 278

Query: 249 --------DLISWNS--MLHGCV--------------------KCGKMDDAQALFDKMPK 278
                   DL + NS  M+HG +                    K G + DA+ LF +M  
Sbjct: 279 AVVLSVCADLATLNSGQMIHGYMVKGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEMKV 338

Query: 279 RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD--------VVACNAMMGGYVRNGYSMK 330
           +++VSW  +I  +A+ G  D A  L  ++ K +        V+  +A++ G+   G   +
Sbjct: 339 KNLVSWNALISSFAESGVYDKALELLSQLEKMEAYPEMKPNVITWSAIICGFASKGLGEE 398

Query: 331 ALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI 390
           +LE+F  MQ    +  +  ++  VLS  A L  ++ G  +H ++ + +   N   G  LI
Sbjct: 399 SLEVFRKMQLA-NVKANSVTIASVLSICAMLAALNLGREMHGHVIRARMDDNVLVGNGLI 457

Query: 391 DMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
           +MY+KCGS +    VFE++E+     WN+MI G   HGLG+ A      M +    PD +
Sbjct: 458 NMYTKCGSFKPGFMVFEKLENRDSISWNSMIAGYGTHGLGKDALATFNHMIKSGYRPDGV 517

Query: 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIED 510
           TF   L+AC+HAGLV EG   F  MR+  K+EPE++HY CMVD+LGRAG +E A N+I+ 
Sbjct: 518 TFIAALSACSHAGLVAEGHWLFSQMRQNFKIEPEIEHYACMVDLLGRAGLVEEASNIIKG 577

Query: 511 MPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDA 570
           MPMEPN  IW +LL++CR +++ ++ E  A  +  ++S  + S++LLSN+FA    W D+
Sbjct: 578 MPMEPNAYIWSSLLNSCRMHKDTDLAEEAAAKISNLNSKITGSHMLLSNIFAASCRWEDS 637

Query: 571 RRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
            RVR   + + LKK+PG SWIE++  V+ F
Sbjct: 638 ARVRISARAKGLKKVPGWSWIEVKKKVYMF 667


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 193/543 (35%), Positives = 294/543 (54%), Gaps = 29/543 (5%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLM----------LDNGVSVDKFSASLVLKACSRLGLIE 136
           +NA+I  Y     P  AL +F  M          L  G+S+ + +      A + + L  
Sbjct: 51  YNALIAGYFRNHLPDAALGLFHRMPSRDLGSYNALIAGLSLRRHTLPDAAAALASIPLPP 110

Query: 137 EGLQIHGLLRK------VAFGSDLFLQ---------NCLISLYVRCGYLEFARQLFDKMG 181
             +    LLR       +A    LF Q           L+  ++  G +  AR+LFD+M 
Sbjct: 111 SVVSFTSLLRGYVRHGLLADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMP 170

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQI 241
            +D V+  +M+ GY ++G I  AR LFD MP  +RN++SW ++++GYAQ    +  A ++
Sbjct: 171 DKDVVARTAMLSGYCQAGRITEARALFDEMP--KRNVVSWTAMISGYAQ-NGKVILARKL 227

Query: 242 FEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIAR 301
           FE MP+R+ +SW +ML G ++ G ++DA+ LF+ MP   V +   M+ G+ + G VD A+
Sbjct: 228 FEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAK 287

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
            +F+ M  RD    +AM+  Y +N + M+AL  F  M C   + P+  S + +L+  A L
Sbjct: 288 AMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCR-GIRPNYTSFISILTVCAAL 346

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
              D G  +H  + +  F  +     ALI MY KCG+++ A +VF   E   V  WN+MI
Sbjct: 347 ATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMI 406

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
            G A HGLGE A  +  ++    + PD IT+ G+L AC++ G VKEG   F  M     +
Sbjct: 407 TGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSI 466

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
                HY CMVD+LGRAG ++ A +LI +MP+EP+ +IW  L+ ACR ++N  + E  AK
Sbjct: 467 RLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMHKNAEIAEVAAK 526

Query: 542 HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
            L+ ++  ++  YVLLS+++   G W DA  +R  +  RNL K PGCSWIE   +VH F 
Sbjct: 527 KLLELEPGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRNLNKSPGCSWIEYNKMVHLFT 586

Query: 602 VRD 604
             D
Sbjct: 587 SGD 589



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 202/421 (47%), Gaps = 66/421 (15%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRE-- 215
           N  I+  VR G +E AR  FD M +R + SYN++I GY ++   ++A  LF  MP R+  
Sbjct: 21  NARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSRDLG 80

Query: 216 -----------------------------RNLISWNSVLNGYAQLKSGLQFAWQIFEKMP 246
                                         +++S+ S+L GY +    L  A ++F +MP
Sbjct: 81  SYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVR-HGLLADAIRLFHQMP 139

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
           ER+ +++  +L G +  G++++A+ LFD+MP +DVV+   M+ GY + GR+  AR LFDE
Sbjct: 140 ERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDE 199

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD--DASLVIVLSAIAQLGHI 364
           MPKR+VV+  AM+ GY +NG  + A ++F+ M       PD  + S   +L    Q GH+
Sbjct: 200 MPKRNVVSWTAMISGYAQNGKVILARKLFEVM-------PDRNEVSWTAMLVGYIQAGHV 252

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDM----YSKCGSIENAIKVFEQI---EDGSVDHW 417
           +          +D F+    H VA  +     + + G ++ A  +FE++   +DG+   W
Sbjct: 253 EDA--------EDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGT---W 301

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
           +AMI     +     A     EM    I P+  +F  +L  CA       G      M R
Sbjct: 302 SAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLR 361

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSACRNYENLNVG 536
               + ++     ++ +  + G+++ A+ +      EP DV+ W ++++    Y    +G
Sbjct: 362 C-SFDTDVFAVSALITMYIKCGNLDKAKRVFN--MFEPKDVVMWNSMIT---GYAQHGLG 415

Query: 537 E 537
           E
Sbjct: 416 E 416



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 143/322 (44%), Gaps = 49/322 (15%)

Query: 18  LLLLRKC-KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF-ARYIFFKY 75
           ++L RK  + + D N++    +  G+I+  H+       F++ P  P+    A  + F  
Sbjct: 221 VILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDA-EDLFNAMPDHPVAACNAMMVGFGQ 279

Query: 76  HAFREK----------KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
           H   +           +D   W+A+IK Y       EAL  F  ML  G+  +  S   +
Sbjct: 280 HGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISI 339

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           L  C+ L   + G ++H  + + +F +D+F  + LI++Y++CG L+ A+++F+    +D 
Sbjct: 340 LTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDV 399

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM 245
           V +NSMI GY + G  E A  +FD +                            ++    
Sbjct: 400 VMWNSMITGYAQHGLGEEALGIFDDL----------------------------RLARMA 431

Query: 246 PERDLISWNSMLHGCVKCGKMDDAQALFDKMP-----KRDVVSWANMIDGYAKLGRVDIA 300
           P  D I++  +L  C   GK+ + + +F+ M      +     ++ M+D   + G VD A
Sbjct: 432 P--DGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEA 489

Query: 301 RRLFDEMP-KRDVVACNAMMGG 321
             L + MP + D +   A+MG 
Sbjct: 490 LDLINNMPVEPDAIIWGALMGA 511



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 123/271 (45%), Gaps = 26/271 (9%)

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
           +++ N+ +   V+ G ++ A+A FD MP R   S+  +I GY +    D A  LF  MP 
Sbjct: 17  VVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPS 76

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQ--CELYLHPDDASLVIVLSAIAQLGHIDKG 367
           RD+ + NA++      G S++   + D       + L P   S   +L    + G +   
Sbjct: 77  RDLGSYNALIA-----GLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADA 131

Query: 368 VAI-HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           + + H+  E++  +        L+  +   G +  A K+F+++ D  V    AM++G   
Sbjct: 132 IRLFHQMPERNHVTYT-----VLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQ 186

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
            G    A  L  EM + ++    +++T +++  A  G V        L R++ ++ P+  
Sbjct: 187 AGRITEARALFDEMPKRNV----VSWTAMISGYAQNGKVI-------LARKLFEVMPDRN 235

Query: 487 HYGCMVDILG--RAGHIEAARNLIEDMPMEP 515
                  ++G  +AGH+E A +L   MP  P
Sbjct: 236 EVSWTAMLVGYIQAGHVEDAEDLFNAMPDHP 266


>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 566

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 202/597 (33%), Positives = 311/597 (52%), Gaps = 80/597 (13%)

Query: 37  MITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSH 96
           M+      +      L+ S++ SP T L   A  +F + H       PF WN +I+ +S 
Sbjct: 1   MVNPNLRTDPSTIYNLIKSYALSPSTILK--AHNLFQQIH---RPTLPF-WNIMIRGWSV 54

Query: 97  GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFL 156
              P EA+ M+ LM   G+  +  +   + KAC+R+  +  G  IH  + K+ F S L++
Sbjct: 55  SDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYV 114

Query: 157 QNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRER 216
            N LI++Y  CG+L  A++                               +FD MP  ER
Sbjct: 115 SNALINMYGSCGHLGLAQK-------------------------------VFDEMP--ER 141

Query: 217 NLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLISWNSMLHGCVKCGKMDDAQAL 272
           +L+SWNS++ GY Q K   +    +FE M     + D ++   ++  C   G+   A A+
Sbjct: 142 DLVSWNSLVCGYGQCKR-FREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAM 200

Query: 273 -----------------------------------FDKMPKRDVVSWANMIDGYAKLGRV 297
                                              FD+M  R++VSW  MI GY K G +
Sbjct: 201 VDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYGKAGNL 260

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
             AR LFD M +RDV++   M+  Y + G   +AL +F  M  E  + PD+ ++  VLSA
Sbjct: 261 VAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMM-ESKVKPDEITVASVLSA 319

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
            A  G +D G A H Y++K     +   G ALIDMY KCG +E A++VF+++       W
Sbjct: 320 CAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSW 379

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
            ++I+GLA++G  + A D    M R  ++P    F G+L ACAHAGLV +GL  FE M +
Sbjct: 380 TSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILLACAHAGLVDKGLEYFESMEK 439

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
           ++ L+PE++HYGC+VD+L R+G+++ A   I++MP+ P+ VIWR LLSA + + N+ + E
Sbjct: 440 VYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRILLSASQVHGNIPLAE 499

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
              K L+ +D SNS +YVL SN +AG   W DA ++R +M++ N++K  G S IE+E
Sbjct: 500 IATKKLLELDPSNSGNYVLSSNTYAGSNRWEDAVKMRELMEKSNVQKPSGSSCIEME 556



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 133/440 (30%), Positives = 228/440 (51%), Gaps = 27/440 (6%)

Query: 18  LLLLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
           L L + C  + DV+    IHAR++  GF  + +++  L+  + S  C  L   A+ +F +
Sbjct: 81  LFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGS--CGHLG-LAQKVFDE 137

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
                 ++D   WN+++  Y      +E L +F  M   GV  D  +   V+ AC+ LG 
Sbjct: 138 M----PERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGE 193

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
                 +   + +     D++L N LI +Y R G +  AR +FD+M  R+ VS+N+MI G
Sbjct: 194 WGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMG 253

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYA---QLKSGLQFAWQIFEKMPERDLI 251
           Y K+GN+ +ARELFD+M   +R++ISW +++  Y+   Q    L+   ++ E   + D I
Sbjct: 254 YGKAGNLVAARELFDAMS--QRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEI 311

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDV---VSWAN-MIDGYAKLGRVDIARRLFDEM 307
           +  S+L  C   G +D  +A  D + K DV   +   N +ID Y K G V+ A  +F EM
Sbjct: 312 TVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEM 371

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
            K+D V+  +++ G   NG++  AL+ F  M  E+ + P   + V +L A A  G +DKG
Sbjct: 372 RKKDSVSWTSIISGLAVNGFADSALDYFSRMLREV-VQPSHGAFVGILLACAHAGLVDKG 430

Query: 368 VAIHRYLEKDQFSLNG--KHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGL 424
           +     +EK  + L    KH   ++D+ S+ G+++ A +  +++     V  W  +++  
Sbjct: 431 LEYFESMEK-VYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRILLSAS 489

Query: 425 AIHG---LGELAFDLLMEME 441
            +HG   L E+A   L+E++
Sbjct: 490 QVHGNIPLAEIATKKLLELD 509


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 213/613 (34%), Positives = 325/613 (53%), Gaps = 43/613 (7%)

Query: 6   NYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLT 65
           N++   NS      L+        ++QIH R++ +G   N  L TKLV   + S      
Sbjct: 48  NHDHCFNSDSFYASLIDNSTHKRHLDQIHNRLVISGLQHNGFLMTKLV---NGSSNLGQI 104

Query: 66  EFARYIF--FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSAS 123
            +AR +F  F Y       D F+WNAII++YS     ++ + M+  M   GV  D F+  
Sbjct: 105 CYARKLFDEFCY------PDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFP 158

Query: 124 LVLKACSRLGLIEEGLQ--IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
            VLKAC+ L  ++ GL   IHG + K  FGSD+F+QN L++LY +CG++  A+ +FD + 
Sbjct: 159 YVLKACTEL--LDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLY 216

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQI 241
            R  VS+ S+I GY ++G    A  +F  M    RN    N V   +  L S       I
Sbjct: 217 HRTIVSWTSIISGYAQNGKAVEALRMFSQM----RN----NGVKPDWIALVS-------I 261

Query: 242 FEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIAR 301
                + D +     +HG V    ++D  AL             ++   YAK G V +A+
Sbjct: 262 LRAYTDVDDLEQGRSIHGFVIKMGLEDEPALL-----------ISLTAFYAKCGLVTVAK 310

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
             FD+M   +V+  NAM+ GY +NG++ +A+ +F  M     + PD  ++   + A AQ+
Sbjct: 311 SFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYM-ISRNIKPDSVTVRSAVLASAQV 369

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
           G ++    +  Y+ K  +  +     +LIDMY+KCGS+E A +VF++  D  V  W+AMI
Sbjct: 370 GSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMI 429

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
            G  +HG G  A +L   M++  + P+D+TF GLL AC H+GLVKEG   F  M+   ++
Sbjct: 430 MGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMKDF-EI 488

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
            P  +HY C+VD+LGRAG++  A   I  +P+EP   +W  LLSAC+ Y  + +GE  A 
Sbjct: 489 VPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAAN 548

Query: 542 HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
            L  +D  N+  YV LSN++A   +W+    VR +M+E+ L K  G S IE+ G +  F 
Sbjct: 549 KLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFH 608

Query: 602 VRDKSRLQVRDIY 614
           V DKS    ++I+
Sbjct: 609 VGDKSHPMAKEIF 621


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 180/444 (40%), Positives = 269/444 (60%), Gaps = 10/444 (2%)

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNL---ISWNSVLNGYAQLKS---GLQFAW 239
           V +N++I G+ +SG  E +   F  M +R   +   +++ SVL+   + K    G+Q   
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDM-VRASAMATAVTYVSVLSACGKGKDLLLGMQVHK 185

Query: 240 QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDI 299
           ++ E     D    N+++    +CG MD A  LF+ M  R + SW ++I G  + G+VD 
Sbjct: 186 RVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDR 245

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQ-CELYLHPDDASLVIVLSAI 358
           AR LFD MP+RD +A  AM+ GYV+ G    ALE F  MQ C++    D+ ++V V++A 
Sbjct: 246 ARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKV--RADEFTMVSVVTAC 303

Query: 359 AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWN 418
           AQLG ++ G     Y+ +    ++   G ALIDMYSKCGSIE A+ VF+ + +     W 
Sbjct: 304 AQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWT 363

Query: 419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRI 478
           A+I GLA++G GE A D+   M R    PD++TF G+L AC HAGLV +G   F  M   
Sbjct: 364 AIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEA 423

Query: 479 HKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEP 538
           + + P + HYGC++D+LGRAG ++ A + I+ MPM+PN  IW TLL++CR Y N  +GE 
Sbjct: 424 YNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGEL 483

Query: 539 VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVH 598
            A+ L+ +D  NS++Y+LLSNM+A    W D RR+R ++ E+ +KK PGCS IE+ G++H
Sbjct: 484 AAERLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIH 543

Query: 599 EFFVRDKSRLQVRDIYYMLDNMWT 622
           EF   D+S    ++IY  L+N+ T
Sbjct: 544 EFVAADRSHPMNKEIYSKLENVLT 567



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 201/438 (45%), Gaps = 25/438 (5%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           IHA ++  G   N H  + L+  +++                         P +WNA+I 
Sbjct: 78  IHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATG---GGAPVMWNALIS 134

Query: 93  TYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGS 152
            ++     + +   F  M+         +   VL AC +   +  G+Q+H  + +     
Sbjct: 135 GHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLP 194

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           D  ++N L+ +Y  CG ++ A  LF+ M +R   S+ S+I G V+SG ++ AR+LFD MP
Sbjct: 195 DQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMP 254

Query: 213 IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLISWNSMLHGCVKCGKMDD 268
             ER+ I+W ++++GY Q+    + A + F  M       D  +  S++  C + G ++ 
Sbjct: 255 --ERDTIAWTAMIDGYVQVGR-FRDALETFRYMQICKVRADEFTMVSVVTACAQLGALET 311

Query: 269 AQALFDKMP----KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVR 324
            +     M     K DV     +ID Y+K G ++ A  +F +M  RD     A++ G   
Sbjct: 312 GEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAV 371

Query: 325 NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL-EKDQFSLNG 383
           NG   +A+++F  M   L   PD+ + V VL+A    G +DKG      + E    S   
Sbjct: 372 NGRGEEAIDMFYRMLRALQT-PDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTV 430

Query: 384 KHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHG---LGELAFDLLME 439
            H   LID+  + G ++ A+   +++    +   W  ++    ++G   +GELA + L+E
Sbjct: 431 VHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLE 490

Query: 440 MERLSIEPDDITFTGLLN 457
           +     +PD+ T   LL+
Sbjct: 491 L-----DPDNSTAYILLS 503


>gi|115476932|ref|NP_001062062.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|42409025|dbj|BAD10278.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113624031|dbj|BAF23976.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|215715342|dbj|BAG95093.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640747|gb|EEE68879.1| hypothetical protein OsJ_27695 [Oryza sativa Japonica Group]
          Length = 563

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 188/528 (35%), Positives = 286/528 (54%), Gaps = 63/528 (11%)

Query: 141 IHGLLRKVAFGSDLFL--QNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
           +H L    A  S   L   N  I+   R G +  AR++FD M  RD+VS+N+++    ++
Sbjct: 1   MHRLRHHAALASSRLLVRDNQRITALARAGDVAAARRVFDAMPRRDAVSWNALLTALWRA 60

Query: 199 G-NIESARELFDSMPIR-----------------------------ERNLISWNSVLNGY 228
           G ++ +AR LFD MP R                              RN+ SWN++L G 
Sbjct: 61  GRDLPAARSLFDDMPSRNVISWNSIIAGCLAHGDLAAASAYFARAPRRNVASWNAMLAGL 120

Query: 229 AQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMI 288
            +L S ++ A  +F++MPER+++S+ +M+ G  +CG++  A+ LFD MP R++VSWA MI
Sbjct: 121 VRLGS-MEDARSLFDQMPERNVVSYTTMVDGLARCGEVASARELFDAMPTRNLVSWAAMI 179

Query: 289 DGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE------- 341
            GY     ++ AR+LF+ MP+++VVAC AM+ GY + G    A  +FD ++ +       
Sbjct: 180 SGYVDNNMLEEARKLFEAMPEKNVVACTAMITGYCKEGDLQNARRLFDGIRAKDVISWNA 239

Query: 342 ---LYLH--------------------PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
               Y+H                    PD A+L+ +L+A + L  + +G + H  + K  
Sbjct: 240 IISGYVHNGLGEEATKLYIIMLREGIKPDQATLIALLTACSSLALLRQGRSTHAVVIKAM 299

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
              +     AL+ MYSKCG+++ +  VF  ++   +  WN +I   A HG  +    L  
Sbjct: 300 LESSISICNALMTMYSKCGNVDESELVFMSLKSQDIVSWNTIIAAYAQHGRYQKVIALFH 359

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
           EME   + P+DITF  +L+AC HAG V E L  F+LM   + + P  +HY C+VDIL RA
Sbjct: 360 EMELCGLIPNDITFLSMLSACGHAGRVDESLKLFDLMFSKYAISPRAEHYACIVDILSRA 419

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           G +E A + I++MP E    +W TLL A + + N+ +GE  AK L+  D  +S +YV+LS
Sbjct: 420 GQLEKACSYIKEMPSEAEKNVWGTLLCASQTHGNVQLGELAAKMLVLSDFESSGAYVMLS 479

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           N++A  GMW +  RVRS MKE+ +KK PG SW E+   VH F   D S
Sbjct: 480 NIYAAAGMWGEVNRVRSQMKEKGVKKQPGHSWTEIADKVHMFVGGDAS 527



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 115/246 (46%), Gaps = 39/246 (15%)

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           AR +F    A    KD   WNAII  Y H    +EA  ++ +ML  G+  D+ +   +L 
Sbjct: 222 ARRLFDGIRA----KDVISWNAIISGYVHNGLGEEATKLYIIMLREGIKPDQATLIALLT 277

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           ACS L L+ +G   H ++ K    S + + N L+++Y +CG ++ +  +F  +  +D VS
Sbjct: 278 ACSSLALLRQGRSTHAVVIKAMLESSISICNALMTMYSKCGNVDESELVFMSLKSQDIVS 337

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
           +N++I  Y + G  +    LF  M +                    GL         +P 
Sbjct: 338 WNTIIAAYAQHGRYQKVIALFHEMEL-------------------CGL---------IPN 369

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS-----WANMIDGYAKLGRVDIARR 302
              I++ SML  C   G++D++  LFD M  +  +S     +A ++D  ++ G+++ A  
Sbjct: 370 D--ITFLSMLSACGHAGRVDESLKLFDLMFSKYAISPRAEHYACIVDILSRAGQLEKACS 427

Query: 303 LFDEMP 308
              EMP
Sbjct: 428 YIKEMP 433


>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 794

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 203/625 (32%), Positives = 326/625 (52%), Gaps = 17/625 (2%)

Query: 7   YNQPCN--STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPL 64
           +N  CN   T   L +L  C +   + Q+ A +  +G   N    ++L+A F +    P 
Sbjct: 22  WNTNCNLVVTHPLLSVLESCASFRRLLQLQALLTVSGLASNRFPASRLLA-FCALSDPPR 80

Query: 65  TEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL 124
              A  +  +     E  + ++   +++ +     P  AL +F  +L + ++VD  +   
Sbjct: 81  LAHAAAVLAQ---CTEGPNAYMLATMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVF 137

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAF-GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183
            +KA +      E   IH +  K  F G  +   N L+ +Y     L  AR+LFD+M  R
Sbjct: 138 AVKAAATSSSPTEA--IHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADR 195

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRER------NLISWNSVLNGYAQLKSGLQF 237
           D VS+ ++IDGY + G  + A  +F  M + E        L++  S       L  G   
Sbjct: 196 DVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTV 255

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
              I E      +   N+++    KCG +  A+ +FD MP +DV SW +M+  YAK G +
Sbjct: 256 HQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDL 315

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
           + A +LF E+P R+VV+ + M+  Y       +A+ IF++M     + P DA+LV VLSA
Sbjct: 316 ENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDM-IAAGVEPIDATLVSVLSA 374

Query: 358 IAQLGHIDKGVAIH-RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
            AQL  +D G  ++  Y+   +  L      A IDM++KCG +  A ++F  +ED +V  
Sbjct: 375 CAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVS 434

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           WN MI    +HG  E A  L  E +   I PD+ T+ G+L+AC+H GLV EG   F+ M+
Sbjct: 435 WNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMK 494

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
            ++ +EP  +HY CM+D+LG+ G ++ A  +   MP+  ++  W  LL+ACR + N+ +G
Sbjct: 495 IVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGNVEIG 554

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
           +  A  L G+D S+S  YVL+S ++A    W   + +R++M++R +KK PGCS IE++G 
Sbjct: 555 KCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIEVDGK 614

Query: 597 VHEFFVRDKSRLQVRDIYYMLDNMW 621
            HEF V D S +   DIY  L N++
Sbjct: 615 CHEFLVADVSHVHSEDIYAALGNIY 639


>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
          Length = 648

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 203/649 (31%), Positives = 340/649 (52%), Gaps = 93/649 (14%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR- 79
           L +C +   + QIHA+ + +G + +    ++L+   +S+   PL          +H+ R 
Sbjct: 11  LARCSSARHLLQIHAQFVASGLLADAFAASRLILFTTSTRLLPLP--------FHHSLRL 62

Query: 80  ----EKKDPFLWNAIIKTY-SHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
                + + F  N ++K    HGL P   L ++  M     + D ++ +++  AC+    
Sbjct: 63  LHVVHRPNAFSCNMVLKAAREHGL-PHLCLPLYASM---SAAPDCYTHTILAAACATRRA 118

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           IEEG Q+H    +  FG +L+L N L+S+Y  CG L  AR++FD   + D+VS+N+++  
Sbjct: 119 IEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNTILAA 178

Query: 195 YVKS-------------------------------GNIESARELFDSMPIRERNLISWNS 223
           YV++                               G ++ AR++FD   +  +++ +W +
Sbjct: 179 YVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDG--VERKDVFTWTA 236

Query: 224 VLNGYAQLKSGLQFAWQIFEKM-----PERDLI--------------------------- 251
           +++ + Q       A  +F  M     P  + +                           
Sbjct: 237 MISCF-QRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRA 295

Query: 252 -------SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
                    N+++H       +  A+ LFD     D  SW +MI GY K G V  A+ LF
Sbjct: 296 GLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELF 355

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
             MP +D V+   M+ G V+N  S +AL IF+NMQ +  + PD+ +LV V+SA   +  +
Sbjct: 356 TVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQ-GIKPDEVTLVSVISACTNMSSL 414

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
           ++G ++H Y+ + Q+++    G +LIDMY KCG +E+A++VF+ +E+     WNA+I GL
Sbjct: 415 EQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGL 474

Query: 425 AIHGLGELAFDLLMEMERLSI-EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
           A++GL   + D+  EME  S   P++ITFTG+L+AC HAGLV+EG   F+LM+  + + P
Sbjct: 475 AMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIP 534

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
            ++HYGCMVD+LGRAG+++ A NLIE MPM P+   W  LL +C  + +  VGE V + L
Sbjct: 535 NIRHYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAWGALLGSCWKHGDNEVGERVGRKL 594

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           + +D  +   + +LSN++A  GMW   + +R  MK+ ++ K+PG S +E
Sbjct: 595 VNLDPHHDGFHTMLSNIYASEGMWQHVKDLRGSMKQWHVPKIPGSSVVE 643


>gi|354805142|gb|AER41563.1| CRR4 [Oryza australiensis]
          Length = 599

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 186/510 (36%), Positives = 283/510 (55%), Gaps = 41/510 (8%)

Query: 114 GVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFA 173
           GV  + F+ + +L+AC+ LGL      +HG + +  FG D+F+QN L+ +Y RCG     
Sbjct: 104 GVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGGDVFVQNALMDVYYRCGGAGGV 163

Query: 174 ---RQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ 230
              RQ+FD+M  +D VS+NS++  Y+ SG+   A  LF++MP  ERN++SWN+V+ G+A+
Sbjct: 164 GAARQVFDQMVEKDVVSWNSIVGVYMSSGDATGAMGLFEAMP--ERNVVSWNTVVAGFAR 221

Query: 231 LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDG 290
               +  A  +F++MP R+ +SWN M+ G    G ++ A ++FD+M ++DVVSW  M+  
Sbjct: 222 -AGDMVTARTVFDRMPSRNAVSWNLMISGYATSGDVEAAHSVFDRMDQKDVVSWTAMVSA 280

Query: 291 YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
           YAK+G +D A++LFD MP +++V+ NAM+ GY  N    +AL  F  M  E    PD+A+
Sbjct: 281 YAKIGDLDNAKQLFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEAT 340

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE 410
           LV V+SA AQLG ++    I  ++ K +  L    G ALIDM++KCG +  A   F +++
Sbjct: 341 LVSVVSACAQLGSVEYCNWIGSFIGKSKIHLTVALGNALIDMFAKCGDVGRAQSFFYEMK 400

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470
              +  W  MI+G A +G    A  +   M R  IE DD  F   L ACAH GL++EG  
Sbjct: 401 TRCIITWTTMISGFAFNGFCREALLVYNNMCREGIELDDTVFIAALAACAHGGLLQEGWS 460

Query: 471 CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNY 530
            F  M + + ++P ++HYGCMVD+LGRA  IE   N I  +                   
Sbjct: 461 IFNEMVKQYNIQPRMEHYGCMVDLLGRAELIEYVSNKITKL------------------- 501

Query: 531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSW 590
                 EP           N S  VL+SN  A  G W+     R+ M+   ++K+PG S 
Sbjct: 502 ------EPF----------NPSYQVLVSNCSALEGRWDGVIGARTSMRNWGIEKVPGSSL 545

Query: 591 IELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           I++   VHEF  +D    + ++IY  +D +
Sbjct: 546 IQVGSEVHEFLAKDTRHERKKEIYETVDGL 575


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 203/625 (32%), Positives = 326/625 (52%), Gaps = 42/625 (6%)

Query: 31  NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAI 90
           +  H  +   GF  N  +   LVA +S S      E A  +F +    +   D   WN+I
Sbjct: 169 SAFHGLICCNGFESNVFVCNALVAMYSRSGSL---EDASLVFDEI-TRKGIDDVISWNSI 224

Query: 91  IKTYSHGLDPKEALVMFCLMLD------NGVSVDKFSASLVLKACSRLGLIEEGLQIHGL 144
           +  +  G +P+ AL +F  M             D  S   +L AC+ L  + +  +IH  
Sbjct: 225 VAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSY 284

Query: 145 LRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESA 204
             +    +D F+ N LI  Y +CG ++ A  +F+ M  +D VS+N+M+ GY +SG   +A
Sbjct: 285 AIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAA 344

Query: 205 RELFDSMPIRERNL----ISWNSVLNGYAQLKSGLQFAWQIFEKM----PERDLISWNSM 256
            ELF +M  R+ N+    I+W++V+ GYAQ   G Q A   F++M     E + ++  S+
Sbjct: 345 FELFKNM--RKENIPLDVITWSAVIAGYAQRGYG-QEALDTFQQMILYGSEPNSVTIISL 401

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVSWAN----------------MIDGYAKLGRVDIA 300
           L  C   G +           K+ ++S  N                +ID Y+K      A
Sbjct: 402 LSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAA 461

Query: 301 RRLFDEMPKRD--VVACNAMMGGYVRNGYSMKALEIFDNMQCELY-LHPDDASLVIVLSA 357
           R +F+ +P+R+  VV    M+GGY + G S  AL++F  M  + Y + P+  ++  +L A
Sbjct: 462 RTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMA 521

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVA--LIDMYSKCGSIENAIKVFEQIEDGSVD 415
            A L  +  G  IH Y+ +     +  + VA  LIDMYSKCG ++ A  VF+ +   +  
Sbjct: 522 CAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEV 581

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            W +M++G  +HG G+ A D+  +M++    PDDI+F  LL AC+H+G+V +GL  F++M
Sbjct: 582 SWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIM 641

Query: 476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNV 535
           R  + +    QHY C++D+L R+G ++ A   I++MPMEP+  IW  LLSACR + N+ +
Sbjct: 642 RSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVEL 701

Query: 536 GEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG 595
            E     L+ M + N  SY L+SN++A    W D  R+R +MK+  +KK PGCSW++ + 
Sbjct: 702 AEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKK 761

Query: 596 VVHEFFVRDKSRLQVRDIYYMLDNM 620
               FFV D+S     +IY +L+ +
Sbjct: 762 GTASFFVGDRSHPLSPEIYSLLERL 786



 Score =  221 bits (564), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 171/558 (30%), Positives = 269/558 (48%), Gaps = 56/558 (10%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIK--NTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           LL++C+++N V QIH ++I  G +    + L+  L    S S  +P       +   Y A
Sbjct: 37  LLKECRSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSP-KSLGTGVVASYLA 95

Query: 78  FREKKDPF------------LWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
                D               WN +++ +        A+ + C ML  G   D F+    
Sbjct: 96  CGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTLPYA 155

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM---GI 182
           LKAC  L     G   HGL+    F S++F+ N L+++Y R G LE A  +FD++   GI
Sbjct: 156 LKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGI 215

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSM-------PIRER-NLISWNSVLNGYAQLKSG 234
            D +S+NS++  +VK  N  +A +LF  M          ER ++IS  ++L   A LK+ 
Sbjct: 216 DDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKAL 275

Query: 235 LQ----FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDG 290
            Q     ++ I       D    N+++    KCG M DA  +F+ M  +DVVSW  M+ G
Sbjct: 276 PQTKEIHSYAI-RNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTG 334

Query: 291 YAKLGRVDIARRLFDEMPKR----DVVACNAMMGGYVRNGYSMKALEIFDNMQCELY-LH 345
           Y + G+   A  LF  M K     DV+  +A++ GY + GY  +AL+ F  M   LY   
Sbjct: 335 YTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMI--LYGSE 392

Query: 346 PDDASLVIVLSAIAQLGHIDKGVAIHRY-LEKDQFSLNGKHGV-----------ALIDMY 393
           P+  +++ +LSA A LG + +G+  H Y L+K   SL+   G            ALIDMY
Sbjct: 393 PNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMY 452

Query: 394 SKCGSIENAIKVFEQI--EDGSVDHWNAMINGLAIHGLGELAFDLLMEM--ERLSIEPDD 449
           SKC S + A  +F  I   + +V  W  MI G A +G    A  L  EM  +  ++ P+ 
Sbjct: 453 SKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNA 512

Query: 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG-CMVDILGRAGHIEAARNLI 508
            T + +L ACAH   ++ G      + R H+ E  +     C++D+  + G ++ ARN+ 
Sbjct: 513 YTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVF 572

Query: 509 EDMPMEPNDVIWRTLLSA 526
           + MP + N+V W +++S 
Sbjct: 573 DSMP-KRNEVSWTSMMSG 589


>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
 gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
 gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
          Length = 648

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 203/649 (31%), Positives = 340/649 (52%), Gaps = 93/649 (14%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR- 79
           L +C +   + QIHA+ + +G + +    ++L+   +S+   PL          +H+ R 
Sbjct: 11  LARCSSARHLLQIHAQFVASGLLADAFAASRLILFTTSTRLLPLP--------FHHSLRL 62

Query: 80  ----EKKDPFLWNAIIKTY-SHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
                + + F  N ++K    HGL P   L ++  M     + D ++ +++  AC+    
Sbjct: 63  LHVVHRPNAFSCNMVLKAAREHGL-PHLCLPLYASM---SAAPDCYTHTILAAACATRRA 118

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           IEEG Q+H    +  FG +L+L N L+S+Y  CG L  AR++FD   + D+VS+N+++  
Sbjct: 119 IEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNTILAA 178

Query: 195 YVKS-------------------------------GNIESARELFDSMPIRERNLISWNS 223
           YV++                               G ++ AR++FD   +  +++ +W +
Sbjct: 179 YVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDV--VERKDVFTWTA 236

Query: 224 VLNGYAQLKSGLQFAWQIFEKM-----PERDLI--------------------------- 251
           +++ + Q       A  +F  M     P  + +                           
Sbjct: 237 MISCF-QRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRA 295

Query: 252 -------SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
                    N+++H       +  A+ LFD     D  SW +MI GY K G V  A+ LF
Sbjct: 296 GLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELF 355

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
             MP +D V+   M+ G V+N  S +AL IF+NMQ +  + PD+ +LV V+SA   +  +
Sbjct: 356 TVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQ-GIKPDEVTLVSVISACTNMSSL 414

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
           ++G ++H Y+ + Q+++    G +LIDMY KCG +E+A++VF+ +E+     WNA+I GL
Sbjct: 415 EQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGL 474

Query: 425 AIHGLGELAFDLLMEMERLSI-EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
           A++GL   + D+  EME  S   P++ITFTG+L+AC HAGLV+EG   F+LM+  + + P
Sbjct: 475 AMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIP 534

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
            ++HYGCMVD+LGRAG+++ A NLIE MPM P+   W  LL +C  + +  VGE V + L
Sbjct: 535 NIRHYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAWGALLGSCWKHGDNEVGERVGRKL 594

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           + +D  +   + +LSN++A  GMW   + +R  MK+ ++ K+PG S +E
Sbjct: 595 VNLDPHHDGFHTMLSNIYASEGMWQHVKDLRGSMKQWHVPKIPGSSVVE 643


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 178/545 (32%), Positives = 307/545 (56%), Gaps = 5/545 (0%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   WN ++   S     +EAL M   M   GV +D  + +  L AC+RL  +  G Q
Sbjct: 232 ERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQ 291

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  + +     D ++ + L+ LY +CG  + A+ +F+ +  R++V++  +I G+++ G 
Sbjct: 292 LHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGC 351

Query: 201 IESARELFDSMPIRERNL--ISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNS 255
              + ELF+ M      L   +  ++++G      L  G Q      +    + ++  NS
Sbjct: 352 FTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNS 411

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           ++    KC  +  A+++F  M ++D+VSW +MI  ++++G +  AR  FD M  ++V+  
Sbjct: 412 LISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITW 471

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           NAM+G Y+++G     L +++ M  E  + PD  + V +    A LG    G  I     
Sbjct: 472 NAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTV 531

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           K    L+     A+I MYSKCG I  A KVF+ +    +  WNAMI G + HG+G+ A +
Sbjct: 532 KVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIE 591

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           +  ++ +   +PD I++  +L+ C+H+GLV+EG   F++M+R+H + P L+H+ CMVD+L
Sbjct: 592 IFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLL 651

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           GRAGH+  A++LI++MPM+P   +W  LLSAC+ + N  + E  AKH+  +DS +S SY+
Sbjct: 652 GRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYM 711

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY 615
           L++ ++A  G  +D+ ++R +M+++ +KK PG SW+E+   VH F   D S  QV  I  
Sbjct: 712 LMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNKVHVFKADDVSHPQVIAIRK 771

Query: 616 MLDNM 620
            LD +
Sbjct: 772 KLDEL 776



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 124/507 (24%), Positives = 231/507 (45%), Gaps = 65/507 (12%)

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQ-LFDKMGIRD 184
           L++C   G +     +HG L  V   S +FLQN L+  Y+ CG L  AR+ L   +   +
Sbjct: 11  LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPN 70

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK------------ 232
            +++N M++GYVK G +  A ELF  MP   R++ SWN++++GY Q +            
Sbjct: 71  VITHNVMLNGYVKLGRLSDAVELFGRMP--ARDVASWNTLMSGYFQSQQYLASLESFVSM 128

Query: 233 --------SGLQFAW---------------------QIFEKMPERDLISWNSMLHGCVKC 263
                   +   FA+                     Q F    + D+ +  +++   V+C
Sbjct: 129 HRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAA--ALVDMFVRC 186

Query: 264 GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV 323
           G +D A  LF ++ +  +    +M+ GY K   VD A  LFD MP+RDVV+ N M+    
Sbjct: 187 GTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALS 246

Query: 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG 383
           ++G   +AL++  +MQ +  +  D  +    L+A A+L  +  G  +H  + ++   ++ 
Sbjct: 247 QSGRVREALDMVVDMQSK-GVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDP 305

Query: 384 KHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
               AL+++Y+KCG  + A  VF  + D +   W  +I G   HG    + +L  +M   
Sbjct: 306 YVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAE 365

Query: 444 SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL---EPELQHY---GCMVDILGR 497
            +  D      L++ C          LC  L R++H L     ++Q       ++ +  +
Sbjct: 366 LMTLDQFALATLISGCC-----SRMDLC--LGRQLHSLCLKSGQIQAVVVSNSLISMYAK 418

Query: 498 AGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557
             ++++A ++   M  E + V W ++++A     N+       +   GM + N  ++  +
Sbjct: 419 CDNLQSAESIFRFMN-EKDIVSWTSMITAHSQVGNI---AKAREFFDGMSTKNVITWNAM 474

Query: 558 SNMFAGLGMWNDARRVRS-MMKERNLK 583
              +   G   D  R+ + M+ E++++
Sbjct: 475 LGAYIQHGAEEDGLRMYNVMLSEKDVR 501



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 198/416 (47%), Gaps = 17/416 (4%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG-VSVDKFSASLVLKACSRLGLIEEGLQ 140
           +D   WN ++  Y        +L  F  M  +G  S + F+ +  +K+C  LG     LQ
Sbjct: 100 RDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQ 159

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           + G+++K     D  +   L+ ++VRCG ++ A +LF ++        NSM+ GYVK+  
Sbjct: 160 LLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYG 219

Query: 201 IESARELFDSMPIRERNLISWN---SVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
           ++ A ELFDSMP  ER+++SWN   S L+   +++  L     +  K    D  ++ S L
Sbjct: 220 VDHALELFDSMP--ERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSL 277

Query: 258 HGCVKC-----GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
             C +      GK   AQ + + +P  D    + +++ YAK G    A+ +F+ +  R+ 
Sbjct: 278 TACARLSSLRWGKQLHAQVIRN-LPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNN 336

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           VA   ++ G++++G   +++E+F+ M+ EL +  D  +L  ++S       +  G  +H 
Sbjct: 337 VAWTVLIAGFLQHGCFTESVELFNQMRAEL-MTLDQFALATLISGCCSRMDLCLGRQLHS 395

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
              K           +LI MY+KC ++++A  +F  + +  +  W +MI   +  G    
Sbjct: 396 LCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAK 455

Query: 433 AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
           A +    M   ++    IT+  +L A    G  ++GL  + +M     + P+   Y
Sbjct: 456 AREFFDGMSTKNV----ITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTY 507



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 19/188 (10%)

Query: 31  NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAI 90
           +QI  R +  G I +T +   ++  +S   C  + E AR +F     F   KD   WNA+
Sbjct: 524 DQIIGRTVKVGLILDTSVANAVITMYSK--CGRILE-ARKVF----DFLNVKDIVSWNAM 576

Query: 91  IKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKV- 148
           I  YS HG+  K+A+ +F  +L  G   D  S   VL  CS  GL++EG     ++++V 
Sbjct: 577 ITGYSQHGMG-KQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVH 635

Query: 149 --AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS-YNSMIDGYVKSGNIE--- 202
             + G + F  +C++ L  R G+L  A+ L D+M ++ +   + +++      GN E   
Sbjct: 636 NISPGLEHF--SCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAE 693

Query: 203 -SARELFD 209
            +A+ +F+
Sbjct: 694 LAAKHVFE 701


>gi|414879404|tpg|DAA56535.1| TPA: pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 544

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 183/524 (34%), Positives = 299/524 (57%), Gaps = 24/524 (4%)

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL--Q 140
           DP  W  ++K Y+     +EA +++   L            ++LKA +     E GL   
Sbjct: 19  DPDKWAHLVKEYASQSLVREAALVYARNLPRRTHHQPL-LPVLLKAAAASSPAELGLGKS 77

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H    K AF  DL +   ++S+Y +CG L  AR+ FD+M  R+ +SYN+++ GY  +G+
Sbjct: 78  LHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAVAGD 137

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE--RDLISWNSMLH 258
           ++ A  LF  M  R    ++W +++ G+A+ K  +  A + FE  P   R +++W  ++ 
Sbjct: 138 MDGALALFGGM--RSWTHVTWATLIRGFAE-KGDMAEARRWFEATPPGMRTVVTWTVLVQ 194

Query: 259 GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
           G V  G M+ A+ +FD+MP R+   W++M+ GY K G  + AR +FD +P R++V  NA+
Sbjct: 195 GYVCAGDMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNAL 254

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH-----RY 373
           + GY + G S +ALE F  M  E  + PD+ ++  +LSA AQLG +++G  +H      +
Sbjct: 255 IAGYAQIGCSEQALEAFHLMLQE-RVKPDEFTMASLLSACAQLGSLEQGKKVHDFINQEH 313

Query: 374 LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
           + K+ F +NG     LIDMY+KCG + +A  +F+ +   + + WN MI+ LA HG  + A
Sbjct: 314 IRKNHFVMNG-----LIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALASHGQSDEA 368

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493
             L  +MER   +P+ IT   +L AC H G V EGL  F  +   + +E  ++HYGC+VD
Sbjct: 369 LHLFFQMERSGRKPNTITVLAVLGACTHGGFVDEGLQIFNKL-DAYGVEAGVEHYGCLVD 427

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD----SS 549
           +LGRAG ++ A  ++ +M  EPN+VIW +LL ACR + +  +   V + ++ +     SS
Sbjct: 428 LLGRAGKLKEAYEIVNNMSEEPNEVIWGSLLGACRVHRDAEMSRLVTEEILRLHSFHASS 487

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
           N + Y++L+N+ A    W  A ++R  M  R ++K PGCS +EL
Sbjct: 488 NDAEYIMLANIMAASERWEQAEQMRRKMARRGVEKTPGCSSLEL 531


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 203/611 (33%), Positives = 329/611 (53%), Gaps = 54/611 (8%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVA-SFSSSPCTPLTEFARYIFFKYHAF 78
           L++    L  +  IHA ++  G  ++T+L  K++  SF+               + +   
Sbjct: 16  LIQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTN----------YSFRIL 65

Query: 79  REKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
            + K+P  FL+N +I+        +E++ ++  M   G+S D F+   VLKAC+R+   E
Sbjct: 66  DQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSE 125

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G+++H L+ K    +D F++  LI+LY +CG+                           
Sbjct: 126 LGVKMHSLVVKAGCEADAFVKISLINLYTKCGF--------------------------- 158

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGY---AQLKSGLQFAWQIFEKMPERDLISW 253
               I++A ++FD +P  ++N  SW + ++GY    + +  +    ++ E     D  S 
Sbjct: 159 ----IDNAFKVFDDIP--DKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSL 212

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
             +L  C + G +   + + + + +    R+V     ++D Y K G ++ AR +FD M +
Sbjct: 213 VEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLE 272

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           +++V+ ++M+ GY  NG   +AL++F  M  E  L PD  ++V VL + A+LG ++ G  
Sbjct: 273 KNIVSWSSMIQGYASNGLPKEALDLFFKMLNE-GLKPDCYAMVGVLCSCARLGALELGDW 331

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
               +  ++F  N   G ALIDMY+KCG ++ A +VF  +       WNA I+GLA+ G 
Sbjct: 332 ASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGH 391

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
            + A  L  +ME+  I+PD  TF GLL AC HAGLV+EG   F  M  +  L PE++HYG
Sbjct: 392 VKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYG 451

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549
           CMVD+LGRAG ++ A  LI+ MPME N ++W  LL  CR + +  + E V K LI ++  
Sbjct: 452 CMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPW 511

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQ 609
           +S +YVLLSN++A    W +A ++RS+M ER +KK+PG SWIE++GVVH+F V D S   
Sbjct: 512 HSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPL 571

Query: 610 VRDIYYMLDNM 620
              IY  L  +
Sbjct: 572 SEKIYAKLGEL 582



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 144/315 (45%), Gaps = 46/315 (14%)

Query: 16  STLLLLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           S + +L  CK   D+     I   +   G ++N  + T LV  +    C  + E AR +F
Sbjct: 211 SLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGK--CGNM-ERARSVF 267

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL 132
                   +K+   W+++I+ Y+    PKEAL +F  ML+ G+  D ++   VL +C+RL
Sbjct: 268 DGML----EKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARL 323

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
           G +E G     L+    F  +  L   LI +Y +CG ++ A ++F  M  +D V +N+ I
Sbjct: 324 GALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAI 383

Query: 193 DGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLIS 252
            G   SG+++ A  LF  M                    KSG++         P+R+  +
Sbjct: 384 SGLAMSGHVKDALGLFGQME-------------------KSGIK---------PDRN--T 413

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMP-----KRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
           +  +L  C   G +++ +  F+ M        ++  +  M+D   + G +D A +L   M
Sbjct: 414 FVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSM 473

Query: 308 P-KRDVVACNAMMGG 321
           P + + +   A++GG
Sbjct: 474 PMEANAIVWGALLGG 488


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 189/628 (30%), Positives = 342/628 (54%), Gaps = 39/628 (6%)

Query: 20  LLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+KC+ L ++    Q+HA+++  G      L ++L+  +  + C    E AR +F K  
Sbjct: 16  ILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCV---EDARRMFDKM- 71

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
               +++ F W AI++ Y    D +E + +F LM++ GV  D F    V KACS L    
Sbjct: 72  ---SERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYR 128

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G  ++  +  + F  +  ++  ++ ++++CG ++ AR+ F+++  +D   +N M+ GY 
Sbjct: 129 VGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYT 188

Query: 197 KSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQL---KSGLQF-AWQIFEKMPERDL 250
             G  + A  +F  M +   + N I+  S ++    L   + G +   + I  +  + DL
Sbjct: 189 SKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDL 248

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANM--IDGYAKLG----------RVD 298
           +  NS++    KC  ++ A+  F  + + D+VSW  M  + G+ + G          R+ 
Sbjct: 249 LVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMH 308

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
           IA  +F E+  RDVV  N+++    ++G S+ AL++   M     +  +  ++V  L A 
Sbjct: 309 IACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLS-NVEVNTVTMVSALPAC 367

Query: 359 AQLGHIDKGVAIHRY-----LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
           ++L  + +G  IH++     L+   F LN     +LIDMY +CGSI+ + ++F+ +    
Sbjct: 368 SKLAALRQGKEIHQFIIRCGLDTCNFILN-----SLIDMYGRCGSIQKSRRIFDLMPQRD 422

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE 473
           +  WN MI+   +HG G  A +L  +   + ++P+ ITFT LL+AC+H+GL++EG   F+
Sbjct: 423 LVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFK 482

Query: 474 LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENL 533
           +M+  + ++P ++ Y CMVD+L RAG        IE MP EPN  +W +LL ACR + N 
Sbjct: 483 MMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNP 542

Query: 534 NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
           ++ E  A++L  ++  +S +YVL++N+++  G W DA ++R +MKER + K PGCSWIE+
Sbjct: 543 DLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEV 602

Query: 594 EGVVHEFFVRDKSRLQVRDIYYMLDNMW 621
           +  +H F V D S   +  I   +++++
Sbjct: 603 KRKLHSFVVGDTSHPLMEQISAKMESLY 630


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 199/643 (30%), Positives = 327/643 (50%), Gaps = 53/643 (8%)

Query: 20  LLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +++ C +L D     Q+HA +   GF   T +   +V  +    C  + + A  +FF   
Sbjct: 152 VMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVK--CGDV-DLAETVFFDI- 207

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEAL-------------------------------V 105
              E+   F WN++I  YS    P +AL                                
Sbjct: 208 ---ERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLA 264

Query: 106 MFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYV 165
           MF  M + G S +  +   VL AC+    ++ G  +H  + ++    DL   N LI +Y 
Sbjct: 265 MFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYA 324

Query: 166 RCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVL 225
           +CG L+ A+++F  +   D +S+NS+I G V  G  E A  LF+ M  R  +++    +L
Sbjct: 325 KCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQM--RRSSVVLDEFIL 382

Query: 226 NGYAQLKSGLQFA--------WQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP 277
                + SG  +A        + I   M     +  N+++    KCG  D A  +F  MP
Sbjct: 383 PTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVG-NAIITMYAKCGDTDKADLVFRLMP 441

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
            R+ +SW  MI  +++ G +  AR  FD MP+R++V  N+M+  YV+NG+S + L+++ +
Sbjct: 442 LRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVS 501

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
           M+    + PD  +    + A A L  +  G+ +  +  K   SLN     +++ MYS+CG
Sbjct: 502 MRSN-GVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCG 560

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            I+ A   F+ I+D  +  WNAM+   A +GLG    D   +M +   +P+ I++  +L+
Sbjct: 561 LIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLS 620

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
            C+H GLV EG   F+ M R+  + P  +H+ CMVD+LGRAG +E A++LIE MP +PN 
Sbjct: 621 GCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNA 680

Query: 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
            +W  LL +CR + +L + E  AK L+ +D   S  YVLLSNM++  G  ++   +R +M
Sbjct: 681 TVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSEGYVLLSNMYSESGELDNVADMRKLM 740

Query: 578 KERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           K + ++   GCSWIE++  VH F V + S  Q++++Y  L+ M
Sbjct: 741 KVKGIRTSRGCSWIEVDNRVHVFTVDETSHPQIKEVYLKLEEM 783



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 128/489 (26%), Positives = 227/489 (46%), Gaps = 51/489 (10%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLML----DNGVSVDKFSASLVLKACSRLGLIEE 137
           KD   W  +I  YS       +   F LM+    D G + D FS + V+KAC  LG    
Sbjct: 105 KDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRL 164

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
            +Q+H L+ K+ FG +  +QN ++ +YV+CG ++ A  +F  +       +NSMI GY +
Sbjct: 165 AIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQ 224

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER----DLISW 253
                 A ++F+ MP  ER+ +SWN++++ ++Q   G+Q    +F +M  +    + +++
Sbjct: 225 MYGPYKALQIFNRMP--ERDEVSWNTLISIFSQHGFGVQ-CLAMFVEMCNQGFSPNFMTY 281

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
            S+L  C     +     L  ++ +     D+V    +ID YAK G +D+A+R+F  + +
Sbjct: 282 GSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLRE 341

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
            D ++ N+++ G V  G    AL +F+ M+    +  D+  L  +L   +   +   G  
Sbjct: 342 HDHISWNSLITGVVHFGLGEDALILFNQMRRSSVV-LDEFILPTILGVCSGPDYASTGEL 400

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKV------------------------ 405
           +H Y  K     +   G A+I MY+KCG  + A  V                        
Sbjct: 401 LHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGD 460

Query: 406 -------FEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
                  F+ + + ++  WN+M++    +G  E    L + M    ++PD ITFT  + A
Sbjct: 461 IGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRA 520

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
           CA   +VK G+       +   L   +     +V +  R G I+ A+N  +   ++  D+
Sbjct: 521 CADLAIVKLGMQVVTHATKF-GLSLNVSVANSIVTMYSRCGLIKEAKNTFDS--IDDKDL 577

Query: 519 I-WRTLLSA 526
           I W  +L+A
Sbjct: 578 ISWNAMLAA 586



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/443 (25%), Positives = 197/443 (44%), Gaps = 88/443 (19%)

Query: 163 LYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWN 222
           +Y  CG    A Q+F +   R+  ++N+MI   V S  +  A +LFD MP+R ++ +SW 
Sbjct: 52  MYSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWT 111

Query: 223 SVLNGYAQLKSGLQF-AWQIFEKM--------PERDLISWNSMLHGC------------- 260
           ++++GY+Q  +G    +++ F  M           D  S+ S++  C             
Sbjct: 112 TMISGYSQ--NGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLH 169

Query: 261 ----------------------VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVD 298
                                 VKCG +D A+ +F  + +  +  W +MI GY+++    
Sbjct: 170 ALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPY 229

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
            A ++F+ MP+RD V+ N ++  + ++G+ ++ L +F  M C     P+  +   VLSA 
Sbjct: 230 KALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEM-CNQGFSPNFMTYGSVLSAC 288

Query: 359 AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWN 418
           A    +  G  +H  + + + SL+   G  LIDMY+KCG ++ A +VF+ + +     WN
Sbjct: 289 ASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWN 348

Query: 419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA-----------HAGLVKE 467
           ++I G+   GLGE A  L  +M R S+  D+     +L  C+           H   +K 
Sbjct: 349 SLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKS 408

Query: 468 GL------------------------LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503
           G+                        L F LM   + +      +  M+    R+G I  
Sbjct: 409 GMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTIS-----WTAMITAFSRSGDIGK 463

Query: 504 ARNLIEDMPMEPNDVIWRTLLSA 526
           AR   + MP E N V W ++LS 
Sbjct: 464 ARGYFDMMP-ERNIVTWNSMLST 485


>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 176/502 (35%), Positives = 290/502 (57%), Gaps = 10/502 (1%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
            L+ C +   I E  +IH  + K++     FL   ++ L     ++++A  +F ++   +
Sbjct: 13  TLRNCPK---IAELKKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENPN 69

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRER---NLISWNSVLNGYAQL---KSGLQFA 238
             SYN++I  Y  +     A  +F+ M   +    +  ++  V+   A L   + G Q  
Sbjct: 70  VFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVH 129

Query: 239 WQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVD 298
             + +  P+   I+ N+++    KCG M  A  ++++M +RD VSW ++I G+ +LG++ 
Sbjct: 130 AHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMK 189

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
            AR +FDEMP R +V+   M+ GY R G    AL IF  MQ  + + PD+ S++ VL A 
Sbjct: 190 SAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQV-VGIEPDEISVISVLPAC 248

Query: 359 AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWN 418
           AQLG ++ G  IH+Y EK  F  N     AL++MY+KCG I+ A  +F Q+ +  V  W+
Sbjct: 249 AQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWS 308

Query: 419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRI 478
            MI GLA HG G  A  +  +M++  + P+ +TF G+L+ACAHAGL  EGL  F++MR  
Sbjct: 309 TMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVD 368

Query: 479 HKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEP 538
           + LEP+++HYGC+VD+LGR+G +E A + I  MPM+P+   W +LLS+CR + NL +   
Sbjct: 369 YHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNLEIAVV 428

Query: 539 VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVH 598
             + L+ ++   S +YVLL+N++A L  W     VR +++ + +KK PGCS IE+  +V 
Sbjct: 429 AMEQLLKLEPEESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCSLIEVNNLVQ 488

Query: 599 EFFVRDKSRLQVRDIYYMLDNM 620
           EF   D S+   ++++++L  +
Sbjct: 489 EFVSGDDSKPFSQEVFWILKGL 510



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 133/443 (30%), Positives = 234/443 (52%), Gaps = 30/443 (6%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLT--EFARYIFFKYHAF 78
           LR C  + ++ +IHA ++     ++  L TK++       C  L+  ++A  IF +    
Sbjct: 14  LRNCPKIAELKKIHAHIVKLSLSQSNFLVTKML-----DLCDNLSHVDYATMIFQQL--- 65

Query: 79  REKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDN-GVSVDKFSASLVLKACSRLGLIEE 137
            E  + F +NAII+TY+H      A+ +F  ML     S DKF+   V+K+C+ L     
Sbjct: 66  -ENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRL 124

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G Q+H  + K    +    +N LI +Y +CG +  A Q++++M  RD+VS+NS+I G+V+
Sbjct: 125 GQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVR 184

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLISW 253
            G ++SARE+FD MP   R ++SW +++NGYA+       A  IF +M     E D IS 
Sbjct: 185 LGQMKSAREVFDEMPC--RTIVSWTTMINGYAR-GGCYADALGIFREMQVVGIEPDEISV 241

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN----MIDGYAKLGRVDIARRLFDEMPK 309
            S+L  C + G ++  + +     K   +  A     +++ YAK G +D A  LF++M +
Sbjct: 242 ISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIE 301

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           +DV++ + M+GG   +G    A+ +F++MQ +  + P+  + V VLSA A  G  ++G+ 
Sbjct: 302 KDVISWSTMIGGLANHGKGYAAIRVFEDMQ-KAGVTPNGVTFVGVLSACAHAGLWNEGLR 360

Query: 370 IHRYLEKD-QFSLNGKHGVALIDMYSKCGSIENAI-KVFEQIEDGSVDHWNAMINGLAIH 427
               +  D       +H   L+D+  + G +E A+  + +         WN++++   IH
Sbjct: 361 YFDVMRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIH 420

Query: 428 GLGELAFDLLMEMER-LSIEPDD 449
              E+A   ++ ME+ L +EP++
Sbjct: 421 HNLEIA---VVAMEQLLKLEPEE 440


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 184/504 (36%), Positives = 288/504 (57%), Gaps = 9/504 (1%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRC--GYLEFARQLFDKMGI 182
           +L+  S    +++  QIH         SD F+ + ++S       G + +AR LF ++  
Sbjct: 38  ILRHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRK 97

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSMP---IRERNLISWNSVLNGYAQLKS---GLQ 236
            D    N++I  Y  S N   A   +  M    +   ++ ++  +L   +++ S   G  
Sbjct: 98  PDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEA 157

Query: 237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR 296
               +F+     ++   N ++     CG ++ A  +FD+ P+ D  SW  MI GY K G 
Sbjct: 158 IHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGV 217

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
              ARR+F+ MP RDVV+ + M+ GYV+     + L +F +M  E  + P+++ LV  LS
Sbjct: 218 FKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGE-KIEPNESVLVNALS 276

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
           A A LG +++G  I RY+E+    L  + G ALIDMYSKCGS+E A++VF ++++ +V  
Sbjct: 277 ACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLA 336

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           W+AMINGLAI+G G+ A +L  +ME   ++P+++TF G+LNAC+H+ LV EG   F  M 
Sbjct: 337 WSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMT 396

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
            I+ L+P   H+ CMVD+ GRAG ++ A+ +I+ MP +PN  IW  LL+ACR + +  +G
Sbjct: 397 SIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELG 456

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
           E V K L+ +D ++   YVLLSN++A  G W+    +R MM+ER + K PGCS+I+L   
Sbjct: 457 EQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDT 516

Query: 597 VHEFFVRDKSRLQVRDIYYMLDNM 620
           +HEF   D S  Q+  IY  L  M
Sbjct: 517 IHEFVAGDSSHPQLEMIYAKLGEM 540



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 131/435 (30%), Positives = 234/435 (53%), Gaps = 23/435 (5%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L  CKTL D+ QIHA+ ITTG   +  + +++++  + SP   +  +AR++F++      
Sbjct: 42  LSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIP-YARFLFYRI----R 96

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV-DKFSASLVLKACSRLGLIEEGL 139
           K D F+ N +I+ Y+   +P +A+V +  M ++ V   D  +  L+LKACS +  +  G 
Sbjct: 97  KPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGE 156

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
            IH  + K+ + S++ + N L+ +Y  CG +E A  +FD+    D  S+N MI GY+K G
Sbjct: 157 AIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCG 216

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQ-FAWQIFEKMPERDLISWNS 255
             +SAR +F++MP  +R+++SW+ ++NGY Q    K GL  F   + EK+   + +  N+
Sbjct: 217 VFKSARRMFEAMP--DRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNA 274

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWAN----MIDGYAKLGRVDIARRLFDEMPKRD 311
            L  C   G M+  Q +   M +++V         +ID Y+K G V+ A  +F +M +++
Sbjct: 275 -LSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKN 333

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA-I 370
           V+A +AM+ G   NG    AL +F  M+ +  + P++ + + +L+A +    +D+G +  
Sbjct: 334 VLAWSAMINGLAINGQGKDALNLFSQMEMQ-GVKPNEVTFIGILNACSHSKLVDEGCSFF 392

Query: 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHG- 428
           H          N  H   ++D+Y + G ++ A  V + +    +   W A++N   IHG 
Sbjct: 393 HSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGD 452

Query: 429 --LGELAFDLLMEME 441
             LGE     L+E++
Sbjct: 453 TELGEQVGKRLLELD 467


>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
            protein [Zea mays]
          Length = 1467

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 182/559 (32%), Positives = 311/559 (55%), Gaps = 22/559 (3%)

Query: 26   TLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDP- 84
             +  V ++HA ++ +G     +  +K++  ++             +   +  F++ + P 
Sbjct: 853  VMEAVKKLHAHLVVSGLHNCQYAMSKVIRLYALHQSD--------LVSAHKVFKQIESPT 904

Query: 85   -FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHG 143
             FLWN +++  +    PK+A+V +    + G+  D  +   VLKAC++    +EG Q+H 
Sbjct: 905  TFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQMHN 964

Query: 144  LLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIES 203
             + K+ F  D+F+ N LI LY  CG L  AR +F++M ++D VS+NS+I GY +   ++ 
Sbjct: 965  HVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGYSQHNRLKE 1024

Query: 204  ARELFDSMPIRERN--------LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
               LF  M   E          +IS  + L  ++     +++   I     E D+   N+
Sbjct: 1025 VLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRY---IEHNHIEVDVYLGNT 1081

Query: 256  MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
            ++    + G++  A+ +F +M  ++ V+   MI  YAK G +  A+++FD++P +D+++ 
Sbjct: 1082 LIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISW 1141

Query: 316  NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
            ++M+  Y +  +   +LE+F  MQ    + PD   +  VLSA A LG +D G  IH Y+ 
Sbjct: 1142 SSMICAYSQASHFSDSLELFRQMQ-RAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVR 1200

Query: 376  KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
            ++    +     +LIDM++KCG ++ A++VF  +E+     WN++I GLA +G  + A D
Sbjct: 1201 RNNIKADTIMENSLIDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILGLANNGFEDEALD 1260

Query: 436  LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
            +   M      P+++TF G+L ACA+  LV+EGL  FE M+ +H LEP+++HYGC+VDIL
Sbjct: 1261 IFHSMLTEGPRPNEVTFLGVLIACANRQLVEEGLDHFERMKSVHNLEPQMKHYGCVVDIL 1320

Query: 496  GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
             RAG +E A + I +MP+ P+ V+WR LL ACR + N+ V E   K L  +D  NS+  +
Sbjct: 1321 SRAGQLEKAVSFISEMPLAPDPVVWRILLGACRTHGNVAVAEMATKKLSELDPGNSADSM 1380

Query: 556  LLSNMFAGLGMWNDARRVR 574
            LLSN++A    W+DA  VR
Sbjct: 1381 LLSNIYASADRWSDAMNVR 1399



 Score =  245 bits (625), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 121/319 (37%), Positives = 202/319 (63%), Gaps = 2/319 (0%)

Query: 268 DAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGY 327
           +A+ +FD+MP ++VVSW  MI G+A  G V+ AR LFD+MP R+VV+   ++ GY R   
Sbjct: 532 EARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACL 591

Query: 328 SMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV 387
             +AL +  +M     + P + +++ V+ AI+ LG I  G  ++ Y EK     + + G 
Sbjct: 592 YAEALTLLRHMMAG-GISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGN 650

Query: 388 ALIDMYSKCGSIENAIKVFEQIEDG-SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE 446
           +LID+Y+K GS++N++KVF+++ D  ++  W ++I+G A+HGL   A +L  EM R  I+
Sbjct: 651 SLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIK 710

Query: 447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARN 506
           P+ ITF  ++NAC+H GLV++GL  F+ M   + ++PE++H+GC++D+LGRAG +  A  
Sbjct: 711 PNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQ 770

Query: 507 LIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGM 566
           +IE +PME N  +WR LL  C  Y  + +GE   K +  ++  +   + +LSN+   LG 
Sbjct: 771 IIEGLPMEVNVTVWRILLGCCSKYGEVAMGERAIKMISDLERESGGDFAVLSNVLTELGR 830

Query: 567 WNDARRVRSMMKERNLKKL 585
           ++DA + R ++ +R + KL
Sbjct: 831 FSDAEQARKLLDQRKIVKL 849



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 121/421 (28%), Positives = 212/421 (50%), Gaps = 51/421 (12%)

Query: 49  TTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFC 108
           T  + A+  SS  TP +  A  +F         + P  W A +K YSHG  P EAL +F 
Sbjct: 420 TAPVPATARSS--TPPSRTALKVF--------DQSPAPWRAFLKAYSHGPFPLEALHLFK 469

Query: 109 LMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCG 168
               + ++ D F  + VLKAC+ LG    G Q+H L+ +  F    ++   LI++YV   
Sbjct: 470 HARQH-LADDTFVFTFVLKACAGLGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSR 528

Query: 169 YLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGY 228
            L  AR++FD+M +++ VS+N MI G+   G +E AR LFD MP   RN++SW  +++GY
Sbjct: 529 CLVEARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPC--RNVVSWTGLIDGY 586

Query: 229 AQ--------------LKSGLQFA----WQIFEKMPERDLISWNSMLHG-CVKCGKMDDA 269
            +              +  G+  +      +   +     I    ML+G C K G M DA
Sbjct: 587 TRACLYAEALTLLRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDA 646

Query: 270 QALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM-PKRDVVACNAMMGGYVRNGYS 328
           +               ++ID YAK+G V  + ++FDEM  +R++V+  +++ G+  +G S
Sbjct: 647 RV------------GNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLS 694

Query: 329 MKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD-QFSLNGKHGV 387
           ++ALE+F  M+    + P+  + + V++A +  G +++G+A  + +  +       KH  
Sbjct: 695 VEALELFAEMR-RAGIKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFG 753

Query: 388 ALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHG---LGELAFDLLMEMERL 443
            +IDM  + G +  A ++ E +  + +V  W  ++   + +G   +GE A  ++ ++ER 
Sbjct: 754 CIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCCSKYGEVAMGERAIKMISDLERE 813

Query: 444 S 444
           S
Sbjct: 814 S 814



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 110/479 (22%), Positives = 207/479 (43%), Gaps = 61/479 (12%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPC----------TPL----------------- 64
           Q+HA ++  GF  + ++ T L+  +  S C           P+                 
Sbjct: 500 QLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAGWG 559

Query: 65  -TEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSAS 123
             E+AR +F +       ++   W  +I  Y+      EAL +   M+  G+S  + +  
Sbjct: 560 EVEYARLLFDQMPC----RNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVL 615

Query: 124 LVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM-GI 182
            V+ A S LG I  G  ++G   K    SD  + N LI LY + G ++ + ++FD+M   
Sbjct: 616 AVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDR 675

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQ---LKSGLQ- 236
           R+ VS+ S+I G+   G    A ELF  M     + N I++ SV+N  +    ++ GL  
Sbjct: 676 RNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLAF 735

Query: 237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLG 295
           F   ++E   + ++  +  ++    + G++ +A+ + + +P + +V  W  ++   +K G
Sbjct: 736 FKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCCSKYG 795

Query: 296 RVDIARR---LFDEMPKR---DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
            V +  R   +  ++ +    D    + ++    R   + +A ++ D  +    +   +A
Sbjct: 796 EVAMGERAIKMISDLERESGGDFAVLSNVLTELGRFSDAEQARKLLDQRK---IVKLQEA 852

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
            +  V    A L  +  G+   +Y       L   H   L+          +A KVF+QI
Sbjct: 853 VMEAVKKLHAHL--VVSGLHNCQYAMSKVIRLYALHQSDLV----------SAHKVFKQI 900

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
           E  +   WN ++ GLA     + A     + +   ++PD++TF  +L ACA     KEG
Sbjct: 901 ESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEG 959


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 186/578 (32%), Positives = 315/578 (54%), Gaps = 57/578 (9%)

Query: 82  KDPFLWNAIIKTYSHGLDPKE-ALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           K+   W  +I  ++      E    +F  M  +G   ++++ S VLK CSR   I+ G  
Sbjct: 96  KNTQTWTILISGFARAAGSSELVFSLFREMQADGACPNQYTLSSVLKCCSRENNIQFGKG 155

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           IH  + +   G D+ L+N ++ LY++C   E+A   F+ M  +D VS+N MI  Y++ G+
Sbjct: 156 IHAWILRNGVGGDVVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGD 215

Query: 201 IESARELFDSMPIRERNLISWNSVLNG--------------YAQLKSGLQFAWQIFEK-- 244
           +E + E+F + P   ++++SWN++++G              Y  +  G +F+   F    
Sbjct: 216 VEKSLEMFRNFP--NKDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIAL 273

Query: 245 --MPERDLISWNSMLHGCV--------------------KCGKMDDAQALFDKMPKRDVV 282
             +    L+     LHG V                    KCG+MD A  +   +P     
Sbjct: 274 ILVSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPL---- 329

Query: 283 SWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
                   + + G   +  +     PK  +V+ ++M+ GYV NG     ++ F +M CEL
Sbjct: 330 -------NFLRKGNFGVTCK----EPKARMVSWSSMVSGYVWNGKYEDGMKTFRSMVCEL 378

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENA 402
            +  D  ++  ++SA A  G ++ G  IH Y++K    ++   G +LIDMYSK GS+++A
Sbjct: 379 IV-VDIRTVATIISACANAGILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDA 437

Query: 403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
           + +FEQI++ +V  W +MI+G A+HG G+ A  L   M  L I P+++TF G+LNAC+H 
Sbjct: 438 LMIFEQIKEPNVVLWTSMISGCALHGQGKEAISLFEGMLNLGIIPNEVTFVGVLNACSHV 497

Query: 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRT 522
           GL++EG   F +M+  + + PE++HY  MV++ GRAGH+  A+N I +  +     +WR+
Sbjct: 498 GLIEEGCRYFRMMKDTYHINPEVEHYTSMVNLYGRAGHLIEAKNFIFENSISHFTSVWRS 557

Query: 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
            LS+CR ++N N+G+ V++ L+    S+  +Y+LLSNM +    W++A  VRS+M +R +
Sbjct: 558 FLSSCRLHKNFNMGKSVSEMLLQSAPSDPDAYILLSNMCSSNHQWDEAAIVRSLMYQRGV 617

Query: 583 KKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           KK PG SW++L+  +H F V D+S  Q ++IY  LD++
Sbjct: 618 KKQPGQSWVQLKDQIHSFTVGDRSHPQDKEIYSYLDSL 655



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 114/455 (25%), Positives = 219/455 (48%), Gaps = 46/455 (10%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK-SGNIESARELFDSMPIRER 216
           N L++LYV+   L+ A +LFD++  +++ ++  +I G+ + +G+ E    LF  M     
Sbjct: 71  NYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARAAGSSELVFSLFREMQADGA 130

Query: 217 --NLISWNSVLNGYAQLKSGLQF-----AWQIFEKMPERDLISWNSMLHGCVKCGKMDDA 269
             N  + +SVL   ++ ++ +QF     AW I       D++  NS+L   +KC + + A
Sbjct: 131 CPNQYTLSSVLKCCSR-ENNIQFGKGIHAW-ILRNGVGGDVVLENSILDLYLKCKEFEYA 188

Query: 270 QALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSM 329
           ++ F+ M ++DVVSW  MI  Y + G V+ +  +F   P +DVV+ N ++ G ++ GY  
Sbjct: 189 ESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYER 248

Query: 330 KALEIFDNMQCELYLHPDDASLV---IVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG 386
            ALE    + C +  H  + S V   I L  ++ L  ++ G  +H  +     + +G   
Sbjct: 249 LALE---QLYC-MVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGRVLTFGLNSDGYIR 304

Query: 387 VALIDMYSKCGSIENAIKVFEQI----------------EDGSVDHWNAMINGLAIHGLG 430
            +L++MY KCG ++ A  + + +                    +  W++M++G   +G  
Sbjct: 305 SSLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGKY 364

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY-- 488
           E        M    I  D  T   +++ACA+AG+++ G    ++   I K+   +  Y  
Sbjct: 365 EDGMKTFRSMVCELIVVDIRTVATIISACANAGILEFGK---QIHAYIQKIGLRIDAYVG 421

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
             ++D+  ++G ++ A  + E +  EPN V+W +++S C  +     G+       GM +
Sbjct: 422 SSLIDMYSKSGSLDDALMIFEQIK-EPNVVLWTSMISGCALHGQ---GKEAISLFEGMLN 477

Query: 549 ----SNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579
                N  ++V + N  + +G+  +  R   MMK+
Sbjct: 478 LGIIPNEVTFVGVLNACSHVGLIEEGCRYFRMMKD 512



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 104/463 (22%), Positives = 191/463 (41%), Gaps = 98/463 (21%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMF--------------------C-----------L 109
           +KD   WN +I  Y    D +++L MF                    C            
Sbjct: 197 EKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERLALEQLYC 256

Query: 110 MLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY 169
           M+ +G      + S+ L   S L L+E G Q+HG +      SD ++++ L+ +Y +CG 
Sbjct: 257 MVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVEMYGKCGR 316

Query: 170 LEFARQLFDKMGIR----------------DSVSYNSMIDGYVKSGNIESARELFDSMPI 213
           ++ A  +   + +                   VS++SM+ GYV +G  E   + F SM +
Sbjct: 317 MDKASTILKDVPLNFLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGKYEDGMKTFRSM-V 375

Query: 214 RERNLISWNSVLNGYAQLKSG--LQFAWQI---FEKMPER-DLISWNSMLHGCVKCGKMD 267
            E  ++   +V    +   +   L+F  QI    +K+  R D    +S++    K G +D
Sbjct: 376 CELIVVDIRTVATIISACANAGILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYSKSGSLD 435

Query: 268 DAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGY 327
           DA  +F+++ + +VV W +MI G A  G+   A  LF+ M    ++              
Sbjct: 436 DALMIFEQIKEPNVVLWTSMISGCALHGQGKEAISLFEGMLNLGII-------------- 481

Query: 328 SMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG--KH 385
                             P++ + V VL+A + +G I++G    R + KD + +N   +H
Sbjct: 482 ------------------PNEVTFVGVLNACSHVGLIEEGCRYFRMM-KDTYHINPEVEH 522

Query: 386 GVALIDMYSKCGS-IENAIKVFEQIEDGSVDHWNAMINGLAIH---GLGELAFDLLMEME 441
             +++++Y + G  IE    +FE         W + ++   +H    +G+   ++L++  
Sbjct: 523 YTSMVNLYGRAGHLIEAKNFIFENSISHFTSVWRSFLSSCRLHKNFNMGKSVSEMLLQ-- 580

Query: 442 RLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM-RRIHKLEP 483
             S   D   +  L N C+      E  +   LM +R  K +P
Sbjct: 581 --SAPSDPDAYILLSNMCSSNHQWDEAAIVRSLMYQRGVKKQP 621


>gi|413925171|gb|AFW65103.1| hypothetical protein ZEAMMB73_773985 [Zea mays]
          Length = 567

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 175/461 (37%), Positives = 272/461 (59%), Gaps = 4/461 (0%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           D+   N +I+  +  G L+ A   F     R+  ++N+M+ G V+ G +  A+ LFD MP
Sbjct: 79  DVVSWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLVRLGRVVDAQRLFDEMP 138

Query: 213 IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
             ERN++S+ ++++  A+ +  ++ A ++F+ MP+R+L+SW +M+ GCV+ G   +A+ L
Sbjct: 139 --ERNVVSYTTMVDWLAR-RGEVERAREVFDSMPDRNLVSWAAMISGCVENGMFVEAREL 195

Query: 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
           F+ MP+++VV+   MI G+ K G VD ARRLFD +  +DV++ NAM+ GYV NG+  +A+
Sbjct: 196 FEAMPEKNVVACTAMITGHCKQGDVDSARRLFDGIRAKDVISWNAMIAGYVHNGHGEEAM 255

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDM 392
            +   M  E  + PD A+L+ VL+A + L  + +G + H    K           AL+ M
Sbjct: 256 RLHALMFRE-GVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALMTM 314

Query: 393 YSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITF 452
           YSKCG++  +  VF  +    +  WN +I   A HG  +    L  EME   + PDDITF
Sbjct: 315 YSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEVTGLIPDDITF 374

Query: 453 TGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP 512
             +L+AC H G+V   L  F+LM   + + P  +HY C+VDIL RAG +E A + I+ MP
Sbjct: 375 LSVLSACGHVGMVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKHMP 434

Query: 513 MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARR 572
           ++    +W +LL AC+ + N+ +GE  AK L+  DS +S  YV+LSN++A  GMW    +
Sbjct: 435 LKAEKNVWGSLLGACQIHGNVQLGELAAKMLVQSDSQSSGPYVILSNIYAAAGMWGQVNQ 494

Query: 573 VRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
           +R  MKER +KK PG SW E+   VH F   D S  ++R I
Sbjct: 495 IRGQMKERGVKKQPGYSWTEIGNEVHMFVGGDASHPEMRKI 535



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 99/283 (34%), Positives = 158/283 (55%), Gaps = 15/283 (5%)

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNG-YAQLKSGLQFAWQIF-EKMP 246
           N  I    ++G++ +AR +FD+M    R+++SWN++L   +   +  L  A ++F E MP
Sbjct: 19  NQRISALARAGDVAAARRVFDAMT--HRDVVSWNALLTALWRAGRHHLPAARRLFDEAMP 76

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
            RD++SWNS++ GC+  G +D A A F   P+R+V +W  M+ G  +LGRV  A+RLFDE
Sbjct: 77  SRDVVSWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLVRLGRVVDAQRLFDE 136

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           MP+R+VV+   M+    R G   +A E+FD+M         D +LV   + I+  G ++ 
Sbjct: 137 MPERNVVSYTTMVDWLARRGEVERAREVFDSM--------PDRNLVSWAAMIS--GCVEN 186

Query: 367 GVAIH-RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
           G+ +  R L +     N     A+I  + K G +++A ++F+ I    V  WNAMI G  
Sbjct: 187 GMFVEARELFEAMPEKNVVACTAMITGHCKQGDVDSARRLFDGIRAKDVISWNAMIAGYV 246

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
            +G GE A  L   M R  ++PD  T   +L AC+   L+++G
Sbjct: 247 HNGHGEEAMRLHALMFREGVKPDHATLIAVLTACSALALLRQG 289



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 35/232 (15%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           KD   WNA+I  Y H    +EA+ +  LM   GV  D  +   VL ACS L L+ +G   
Sbjct: 233 KDVISWNAMIAGYVHNGHGEEAMRLHALMFREGVKPDHATLIAVLTACSALALLRQGKST 292

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H +  K    S +   N L+++Y +CG +  +  +F  +  +D VS+N++I  Y + G  
Sbjct: 293 HAIAIKAMLESGISFSNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKY 352

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
           +    LF  M +                   +GL         +P  D I++ S+L  C 
Sbjct: 353 QKVIALFHEMEV-------------------TGL---------IP--DDITFLSVLSACG 382

Query: 262 KCGKMDDAQALFDKMPKRDVVS-----WANMIDGYAKLGRVDIARRLFDEMP 308
             G +D +  LFD M  +  +S     +A ++D  ++ G+++ A      MP
Sbjct: 383 HVGMVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKHMP 434


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 185/506 (36%), Positives = 291/506 (57%), Gaps = 19/506 (3%)

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSD-----LFLQNCLISLYVRCGYLEFARQLFDKM 180
           L +CS +  ++   Q H  + ++   +D       ++ C IS   + G L +A ++FDK+
Sbjct: 27  LDSCSTMAELK---QYHSQIIRLGLSADNDAMGRVIKFCAIS---KSGDLNYALEVFDKI 80

Query: 181 GIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRE--RNLISWNSVLNG----YAQLKSG 234
              D+  YN++  GY++     +   ++  M  +    N  ++  ++      YA ++ G
Sbjct: 81  PHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYA-IEEG 139

Query: 235 LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKL 294
            Q    + +     D  S N+++H  V    ++ A+ +FD MP+RDVVSW ++I GY++ 
Sbjct: 140 KQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQW 199

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
           G VD AR +F+ MP+R+ V+ NAM+  YV++    +A  +FD M+ E  +  D      +
Sbjct: 200 GFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVV-LDKFVAASM 258

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
           LSA   LG +++G  IH Y+EK    L+ K    +IDMY KCG +E A +VF ++    +
Sbjct: 259 LSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGI 318

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
             WN MI GLA+HG GE A +L  EMER  + PD ITF  +L+ACAH+GLV+EG   F+ 
Sbjct: 319 SSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQY 378

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534
           M  +  L+P ++H+GCMVD+LGRAG +E AR LI +MP+ P+  +   L+ ACR + N  
Sbjct: 379 MTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTE 438

Query: 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           +GE + K +I ++  NS  YVLL+N++A  G W D  +VR +M +R +KK PG S IE E
Sbjct: 439 LGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESE 498

Query: 595 GVVHEFFVRDKSRLQVRDIYYMLDNM 620
             V EF    ++  Q ++IY  LD +
Sbjct: 499 SGVDEFIAGGRAHPQAKEIYAKLDEI 524



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 131/436 (30%), Positives = 222/436 (50%), Gaps = 26/436 (5%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L  C T+ ++ Q H+++I  G   +     +++   + S    L  +A  +F K      
Sbjct: 27  LDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLN-YALEVFDKI----P 81

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
             D +++N I + Y      +  + M+  ML   VS +KF+   +++AC     IEEG Q
Sbjct: 82  HPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQ 141

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           IH  + K  FG+D F  N LI +YV    LE AR++FD M  RD VS+ S+I GY + G 
Sbjct: 142 IHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGF 201

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI----SWNSM 256
           ++ ARE+F+ MP  ERN +SWN+++  Y Q  + L  A+ +F++M   +++       SM
Sbjct: 202 VDKAREVFELMP--ERNSVSWNAMIAAYVQ-SNRLHEAFALFDRMRLENVVLDKFVAASM 258

Query: 257 LHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
           L  C   G ++  + +   + K     D      +ID Y K G ++ A  +F+E+P++ +
Sbjct: 259 LSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGI 318

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
            + N M+GG   +G    A+E+F  M+ E+ + PD  + V VLSA A  G +++G    +
Sbjct: 319 SSWNCMIGGLAMHGKGEAAIELFKEMEREM-VAPDGITFVNVLSACAHSGLVEEGKHYFQ 377

Query: 373 YL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI---EDGSVDHWNAMINGLAIHG 428
           Y+ E        +H   ++D+  + G +E A K+  ++    D  V    A++    IHG
Sbjct: 378 YMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGV--LGALVGACRIHG 435

Query: 429 ---LGELAFDLLMEME 441
              LGE     ++E+E
Sbjct: 436 NTELGEQIGKKVIELE 451


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 196/534 (36%), Positives = 294/534 (55%), Gaps = 13/534 (2%)

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           D   +NA++   +      +AL     M  +   ++ +S +  L AC+       G Q+H
Sbjct: 111 DQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVH 170

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
            L+ K + GSD+++   L+ +Y +C   E A+++FD M  R+ VS+NS+I  Y ++G ++
Sbjct: 171 ALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVD 230

Query: 203 SARELF-----DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER-DLISWNSM 256
            A  LF     D     E  L S  S   G A  + G Q   ++ +    R D++  N++
Sbjct: 231 EALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNAL 290

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
           +    KCG+  +A+ +FD+M  R VVS  +MI GYAK   V  A+ +F +M +++VVA N
Sbjct: 291 VDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWN 350

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
            ++  Y  N    +AL +F  ++ E  + P   +   VL+A A L ++  G   H ++ K
Sbjct: 351 VLIATYAHNSEEEEALRLFVRLKRE-SVWPTHYTYGNVLNACANLANLQLGQQAHVHVLK 409

Query: 377 DQFSLNGKH------GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
           + F  +         G +L+DMY K GSI +  KVFE++       WNAMI G A +G  
Sbjct: 410 EGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRA 469

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
           + A  L   M   +  PD +T  G+L+AC H+GLVKEG   F+ M   H + P   HY C
Sbjct: 470 KDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTC 529

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           M+D+LGRAGH++    LIE+MPMEP+ V+W +LL ACR ++N+++GE  A  L  +D  N
Sbjct: 530 MIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLGACRLHKNIDMGEWAAGKLFELDPDN 589

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
           S  YVLLSNM+A LG W D  RVR  MK R + K PGCSWIE+   V+ F  RD
Sbjct: 590 SGPYVLLSNMYAELGKWADVFRVRRSMKHRGVSKQPGCSWIEIGRKVNVFLARD 643



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 120/426 (28%), Positives = 197/426 (46%), Gaps = 62/426 (14%)

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD 209
           F  + FL N L+S Y R G L  AR++FD M  R++ SYN+++    + G  + A  LF 
Sbjct: 46  FAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFG 105

Query: 210 SMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI----SWNSMLHGCV--KC 263
           ++P  + +  S+N+V+   AQ   G   A +    M   D +    S+ S L  C   K 
Sbjct: 106 AIP--DPDQCSYNAVVAALAQHGRGGD-ALRFLAAMHADDFVLNAYSFASALSACASEKA 162

Query: 264 GKM-DDAQALFDKMPK-RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
            +  +   AL  K     DV     ++D YAK  R + A+++FD MP+R++V+ N+++  
Sbjct: 163 SRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITC 222

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH-RYLEKDQFS 380
           Y +NG   +AL +F  M  + ++ PD+ +L  V+SA A L    +G  +H R ++ D+F 
Sbjct: 223 YEQNGPVDEALALFVRMMKDGFV-PDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFR 281

Query: 381 LNGKHGVALIDMYSKCG-------------------------------SIENAIKVFEQI 409
            +     AL+DMY+KCG                               ++ +A  VF Q+
Sbjct: 282 EDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQM 341

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC---------- 459
            + +V  WN +I   A +   E A  L + ++R S+ P   T+  +LNAC          
Sbjct: 342 VEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQ 401

Query: 460 -AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
            AH  ++KEG       R     E ++     +VD+  + G I     + E M    N V
Sbjct: 402 QAHVHVLKEGF------RFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDN-V 454

Query: 519 IWRTLL 524
            W  ++
Sbjct: 455 SWNAMI 460



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 17/223 (7%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +K+   WN +I TY+H  + +EAL +F  +    V    ++   VL AC+ L  ++ G Q
Sbjct: 343 EKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQ 402

Query: 141 IHGLLRKVAF------GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
            H  + K  F       SD+F+ N L+ +Y++ G +    ++F++M  RD+VS+N+MI G
Sbjct: 403 AHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVG 462

Query: 195 YVKSGNIESARELFDSMPI-RER----NLISWNSVLNGYAQLKSGLQFAWQIFEK---MP 246
           Y ++G  + A  LF+ M    ER     +I   S       +K G ++   + E    +P
Sbjct: 463 YAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIP 522

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMP-KRDVVSWANMI 288
            RD   +  M+    + G + + + L + MP + D V WA+++
Sbjct: 523 TRD--HYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLL 563


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 178/503 (35%), Positives = 287/503 (57%), Gaps = 17/503 (3%)

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           L++C+ L  ++    IH  L +     D+F  +CLIS+ +    L++A Q+F ++   + 
Sbjct: 22  LESCTTLSHLK---IIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNL 78

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWN-------SVLNGYAQLKSGLQFA 238
             YNS I G+  SG+ +  +     +  +   L+  N               L  G+Q  
Sbjct: 79  FIYNSFIRGF--SGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAH 136

Query: 239 WQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVD 298
            QI     + D+   NS++      G +  A  +F ++   DVVSW +M+ GY K G V 
Sbjct: 137 GQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVT 196

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
            AR+LFD+MP++++V  + M+ GY +N +  KA+E++  +Q E  +H ++  +V V+++ 
Sbjct: 197 SARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSE-GVHANETVMVSVIASC 255

Query: 359 AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWN 418
           A LG ++ G   H Y+ +++ ++N   G AL+DMY++CGSI+ AI VF+Q+       W 
Sbjct: 256 AHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWT 315

Query: 419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRI 478
            +I G A+HG  E A +    ME+  + P +ITFT +L+AC+H GLV+ GL  FE M+R 
Sbjct: 316 TLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRD 375

Query: 479 HKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEP 538
           +++EP L+HYGCMVD+LGRAG +  A   + +MPM+PN  IW  LL ACR ++N  + E 
Sbjct: 376 YRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAER 435

Query: 539 VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVH 598
             K LI +   +S  YVLLSN++A    W +   +R MMKER + K PG +  E++G VH
Sbjct: 436 AGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVH 495

Query: 599 EFFVRDKSRLQVRDIYYMLDNMW 621
           +F + DK+  +++ I    + MW
Sbjct: 496 KFTIGDKTHPEIQQI----ERMW 514



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 225/425 (52%), Gaps = 19/425 (4%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           L  L  C TL+ +  IHA +I    I +    + L+   S S    L ++A  +F++   
Sbjct: 19  LSFLESCTTLSHLKIIHAHLIRAHTIFDVFAASCLI---SISINKNLLDYAAQVFYQI-- 73

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
             +  + F++N+ I+ +S   DP ++   +     NG+  D  +   ++KAC++ G ++ 
Sbjct: 74  --QNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDM 131

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G+Q HG + +  F SD+++QN L+++Y   G ++ A  +F ++   D VS+ SM+ GY+K
Sbjct: 132 GIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIK 191

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWN 254
           SG++ SAR+LFD MP  E+NL++W+ +++GYA+       ++  + +  +    +     
Sbjct: 192 SGDVTSARKLFDKMP--EKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMV 249

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
           S++  C   G ++  +   D + +     +++    ++D YA+ G +D A  +FD++P R
Sbjct: 250 SVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGR 309

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
           D ++   ++ G+  +GY+ KALE F  M+ +  L P + +   VLSA +  G +++G+ +
Sbjct: 310 DALSWTTLIAGFAMHGYAEKALEYFSRME-KAGLTPREITFTAVLSACSHGGLVERGLEL 368

Query: 371 HRYLEKD-QFSLNGKHGVALIDMYSKCGSIENAIK-VFEQIEDGSVDHWNAMINGLAIHG 428
              +++D +     +H   ++D+  + G +  A K V E     +   W A++    IH 
Sbjct: 369 FESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHK 428

Query: 429 LGELA 433
             E+A
Sbjct: 429 NSEIA 433


>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
          Length = 446

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 174/451 (38%), Positives = 280/451 (62%), Gaps = 21/451 (4%)

Query: 160 LISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLI 219
           L+ +Y +CG +  +R++FD M  R++V++N+MI GY+ +G+ +SA  LF+ M IR    +
Sbjct: 6   LVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIR--TAV 63

Query: 220 SWNSVLNGYAQLKSGLQFAWQIFEKMPE--RDLISWNSMLHGCVKCGKMDDAQALFDKMP 277
           +W  +++G+A+     + A + F+ +P   R++++W  M+ G  +  +M+ A+ +F+ MP
Sbjct: 64  TWIEMIDGFAR-SGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMP 122

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
           +R+  +W++MI GY K G V  AR +FD +P R++V  N+++ GY +NG+S +ALE F  
Sbjct: 123 QRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGK 182

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI-----HRYLEKDQFSLNGKHGVALIDM 392
           MQ E +  PD+ ++  VLSA +QLG +D G  I     H+ ++ +QF LNG     L+DM
Sbjct: 183 MQAEGF-EPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNG-----LVDM 236

Query: 393 YSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITF 452
           Y+KCG + NA  +FE +   +   WN+MI+G AIHG  + A +    ME     PD+ITF
Sbjct: 237 YAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITF 296

Query: 453 TGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP 512
             +L+ACAH G V  GL  F  M + + L   ++HYGC++D+LGRAG I+ A +LI+ MP
Sbjct: 297 LSVLSACAHGGFVNAGLEIFSRMEK-YGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMP 355

Query: 513 MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS----YVLLSNMFAGLGMWN 568
           ++PNDV+W  LL ACR + ++ + + V + ++ +DS+ SS     YVLLSN++A    W 
Sbjct: 356 VKPNDVVWGALLGACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVLLSNIYAASDRWE 415

Query: 569 DARRVRSMMKERNLKKLPGCSWIELEGVVHE 599
            A ++R  M  +  +K  GCS I      HE
Sbjct: 416 KAEKMRMEMANKGFQKTSGCSSIMPGNNTHE 446



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 178/418 (42%), Gaps = 100/418 (23%)

Query: 74  KYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLM-LDNGVS----VDKFSASLVLKA 128
           K   +  +++   WNA+I  Y    D K A+++F  M +   V+    +D F+ S   + 
Sbjct: 21  KVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTET 80

Query: 129 CSRL---------GLIEEGLQIHGLLRKVAFGS-----------DLFLQNCLISLYVRCG 168
             R           ++   + + G  R     +           + F  + +IS Y + G
Sbjct: 81  ARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKG 140

Query: 169 YLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLN 226
            ++ AR +FD++ +R+ V++NS+I GY ++G  E A E F  M     E + ++  SVL+
Sbjct: 141 NVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLS 200

Query: 227 GYAQLKSGLQFAWQIFEKMPERDLISWNS-MLHGCV----KCGKMDDAQALFDKMPKRDV 281
             +QL  GL  A +    M     I  N  +L+G V    KCG + +A+ +F+ M  R+ 
Sbjct: 201 ACSQL--GLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNR 258

Query: 282 VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
             W +MI G+A                                +G S +ALE F  M+ +
Sbjct: 259 ACWNSMISGFAI-------------------------------HGQSKEALEFFGRME-D 286

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIEN 401
            +  PD+ + + VLSA A  G ++ G+ I   +EK   +   KH   LID+  + G I+ 
Sbjct: 287 SHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKE 346

Query: 402 AIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
                                          A+DL+   +R+ ++P+D+ +  LL AC
Sbjct: 347 -------------------------------AYDLI---KRMPVKPNDVVWGALLGAC 370



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 120/236 (50%), Gaps = 16/236 (6%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           WN++I  Y+     +EAL  F  M   G   D+ + + VL ACS+LGL++ G +IH ++ 
Sbjct: 160 WNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMN 219

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
                 + F+ N L+ +Y +CG L  AR +F+ M  R+   +NSMI G+   G  + A E
Sbjct: 220 HKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALE 279

Query: 207 LFDSMPIRER--NLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
            F  M       + I++ SVL+  A    + +GL    +IF +M +  L +     +GC+
Sbjct: 280 FFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGL----EIFSRMEKYGLTT-GIKHYGCL 334

Query: 262 -----KCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
                + G++ +A  L  +MP K + V W  ++        +++A R+ +E+ K D
Sbjct: 335 IDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLGACRVHLDMEMADRVVEEIVKVD 390



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 16/145 (11%)

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
           G +L+ MY+KCG++ ++ KVF+ + + +   WNAMI G   +G  + A  L    E++SI
Sbjct: 3   GTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLF---EKMSI 59

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP-ELQH---YGCMVDILGRAGHI 501
               +T+  +++  A +G         E  RR     P EL++   +  MVD   R   +
Sbjct: 60  RT-AVTWIEMIDGFARSGDT-------ETARRFFDDVPSELRNVVTWTVMVDGYARNAEM 111

Query: 502 EAARNLIEDMPMEPNDVIWRTLLSA 526
           EAAR + E MP + N   W +++S 
Sbjct: 112 EAAREVFEGMP-QRNFFAWSSMISG 135


>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 593

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 192/577 (33%), Positives = 323/577 (55%), Gaps = 18/577 (3%)

Query: 26  TLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCT-PLTEFARYIFFKYHAFREKKDP 84
           +LN + ++HA+++      +    ++++  ++ SP + P   F          F + + P
Sbjct: 26  SLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSPQSLPKAHFV---------FNQIQRP 76

Query: 85  FL--WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
            L  WN +I   S    P +A+  +  M   G+     +   + K+C+R+  + +G  + 
Sbjct: 77  TLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVR 136

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
               K+ F S LF+ N LI +YV  G L  A+++FD M  RD VS+NS+I GY +    +
Sbjct: 137 VHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFK 196

Query: 203 SARELFDSMP---IRERNLISWNSVLNG--YAQLKSGLQFAWQIFEKMPERDLISWNSML 257
              +LF  M    +R  ++    ++      ++ + G      I E     DL   N+++
Sbjct: 197 KVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLI 256

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNA 317
               + G +D A  +F +M ++++VSW  MI GYAK+G +  A++LF+EMP RDV++  +
Sbjct: 257 DMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTS 316

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           M+ GY       +A+++F  M   + + PD+ ++   LSA A LG +D G A+H Y+ K 
Sbjct: 317 MIIGYSLAKQHAEAVKLFQEMMVSM-VKPDEITVATALSACAHLGSLDAGEAVHDYIRKH 375

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLL 437
               +   G +LIDMY KCG +E A++VF  ++      W ++I+GLA++G  E A ++ 
Sbjct: 376 DIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVF 435

Query: 438 MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
            +M +  I P   TF G+L ACAH GLV +G+  F+ M   ++L PE++HYGC+VD+L R
Sbjct: 436 DQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCR 495

Query: 498 AGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557
           +G+++ A N I+ MP+ P+ VIWR LLSAC+ + NL + E V+K L+ +D SN+ +YVL 
Sbjct: 496 SGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLDPSNNGNYVLS 555

Query: 558 SNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           S+ +AG   W+D  ++R +M+  NL+K    S IE+ 
Sbjct: 556 SSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSIEVR 592


>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Cucumis sativus]
          Length = 542

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 193/523 (36%), Positives = 298/523 (56%), Gaps = 51/523 (9%)

Query: 113 NGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGS--DLFLQNCLISLYVRCGYL 170
           N  S ++F  S + + C+    ++   Q+H  L      S   +  +   +S  V  G +
Sbjct: 7   NDNSFNRFQQSSLWQKCTNFRSLK---QLHAFLIVNGLNSTTSVLRELIFVSAIVVSGTM 63

Query: 171 EFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGY 228
           ++A QLF ++   D   +N+MI G  ++    +A  L+  M  R    +  +++ VL   
Sbjct: 64  DYAHQLFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFVLKAC 123

Query: 229 AQL--------------KSGLQ--------------------FAWQIFEKMPERDLISWN 254
            +L              KSG Q                     A  +F+   +R+++ W+
Sbjct: 124 TKLSWVKLGFGIHGKVLKSGFQSNTFVRNTLIYFHANCGDLATARALFDASAKREVVPWS 183

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
           ++  G  + GK+D A+ LFD+MP +D+VSW  MI  YAK G ++ AR+LFDE+PK+DVV 
Sbjct: 184 ALTAGYARRGKLDVARQLFDEMPMKDLVSWNVMITAYAKHGEMEKARKLFDEVPKKDVVT 243

Query: 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
            NAM+ GYV +  + +ALE+FD M+ +L   PDD +++ +LSA A LG ++ G  IHR +
Sbjct: 244 WNAMIAGYVLSRLNKEALEMFDAMR-DLGQRPDDVTMLSILSASADLGDLEIGKKIHRSI 302

Query: 375 EKDQFSLN-GKHGV----ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
               F +  G   V    ALIDMY+KCGSI NA++VF+ +       WN++I GLA+HG 
Sbjct: 303 ----FDMCCGDLSVLLSNALIDMYAKCGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGH 358

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
            E + +L  EM RL ++P++ITF  +L AC+HAG V+EG + F LM+ + K+EP ++HYG
Sbjct: 359 AEESINLFQEMLRLKMKPNEITFVAVLVACSHAGKVREGRMYFNLMKNVFKIEPNIKHYG 418

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549
           CMVDILGRAG +  A + I+ M +EPN +IWRTLL ACR + ++ +G    + L+ M   
Sbjct: 419 CMVDILGRAGLLIEAFDFIDTMEIEPNAIIWRTLLGACRVHGDVELGRRANEQLLKMRKD 478

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
            S  YVLLSN++A  G W+  ++VR +M +  +KK  G S I+
Sbjct: 479 ESGDYVLLSNIYASQGEWDGVQKVRKLMDDGGVKKKVGHSLID 521



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 146/510 (28%), Positives = 261/510 (51%), Gaps = 39/510 (7%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLT-EFARYIFFKYHAF 78
           L +KC     + Q+HA +I  G    T +  +L+  F S+     T ++A  +F +    
Sbjct: 19  LWQKCTNFRSLKQLHAFLIVNGLNSTTSVLRELI--FVSAIVVSGTMDYAHQLFAQI--- 73

Query: 79  REKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
             + D F+WN +I+  +  L P  A+ ++  M + GV  DKF+ S VLKAC++L  ++ G
Sbjct: 74  -SQPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFVLKACTKLSWVKLG 132

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
             IHG + K  F S+ F++N LI  +  CG L  AR LFD    R+ V ++++  GY + 
Sbjct: 133 FGIHGKVLKSGFQSNTFVRNTLIYFHANCGDLATARALFDASAKREVVPWSALTAGYARR 192

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLH 258
           G ++ AR+LFD MP+++  L+SWN ++  YA+    ++ A ++F+++P++D+++WN+M+ 
Sbjct: 193 GKLDVARQLFDEMPMKD--LVSWNVMITAYAK-HGEMEKARKLFDEVPKKDVVTWNAMIA 249

Query: 259 GCVKCGKMDDAQALFDKM----PKRDVVSWANMIDGYAKLGRVDIARRLFDEM-----PK 309
           G V      +A  +FD M     + D V+  +++   A LG ++I +++   +       
Sbjct: 250 GYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCCGD 309

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
             V+  NA++  Y + G    ALE+F  M+       D +S   ++  +A  GH ++ + 
Sbjct: 310 LSVLLSNALIDMYAKCGSIGNALEVFQGMR-----KKDTSSWNSIIGGLALHGHAEESIN 364

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIE------NAIKVFEQIEDGSVDHWNAMING 423
           + + + + +   N    VA++   S  G +       N +K   +IE  ++ H+  M++ 
Sbjct: 365 LFQEMLRLKMKPNEITFVAVLVACSHAGKVREGRMYFNLMKNVFKIEP-NIKHYGCMVDI 423

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
           L   GL   AFD +  ME   IEP+ I +  LL AC   G V+ G    E + ++ K   
Sbjct: 424 LGRAGLLIEAFDFIDTME---IEPNAIIWRTLLGACRVHGDVELGRRANEQLLKMRK--D 478

Query: 484 ELQHYGCMVDILGRAGH---IEAARNLIED 510
           E   Y  + +I    G    ++  R L++D
Sbjct: 479 ESGDYVLLSNIYASQGEWDGVQKVRKLMDD 508


>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37310-like [Cucumis sativus]
          Length = 635

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 195/605 (32%), Positives = 329/605 (54%), Gaps = 31/605 (5%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE--KKDPFLWNA 89
           Q+HAR++ +  + +  L +KL++ +S S           I   Y+ F +  +K+ F WNA
Sbjct: 24  QLHARLVLSSVVPDNFLGSKLISFYSKSGS---------IRDAYNVFGKIPRKNIFSWNA 74

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNG---VSVDKFSASLVLKACSRL----GLIEEGLQIH 142
           +  +Y+      + L +F  ++++    V  D+F+ +  LKA + L    GL +E   +H
Sbjct: 75  LFISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFSNSGLAKE---VH 131

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
             + +     D+F+ N LI+ Y RC  L  AR +FD+M  RD+VS+N+M+ GY + G+ E
Sbjct: 132 SFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYSQGGSYE 191

Query: 203 SARELF----DSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNS 255
             +ELF     S+ ++  N ++  SVL   AQ   L  G++    + E   + D+  WN+
Sbjct: 192 ECKELFRVMLSSVEVKP-NALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDVSLWNA 250

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           ++    KCG +D A+ LF++MP++D +++ +MI GY   G V+ A  LF E  +  +   
Sbjct: 251 VIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFREQERPRLPTW 310

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           NA++ G V+N     A++IF  MQ      P+  +L  +L   +    +  G  IH Y  
Sbjct: 311 NAVISGLVQNNRQEGAVDIFRAMQSH-GCRPNTVTLASILPVFSHFSTLKGGKEIHGYAI 369

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           ++ +  N     A+ID Y+KCG +  A  VF+QI+  S+  W ++I+  A+HG   +A  
Sbjct: 370 RNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALS 429

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           L  EM    I+PD +TFT +L ACAH+G + E    F ++   + ++P ++HY CMV +L
Sbjct: 430 LFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVL 489

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
            RAG +  A   I  MP+EP   +W  LL+      ++ +G+ V   L  ++  N+ +YV
Sbjct: 490 SRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYV 549

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY 615
           +++N+++  G W DA  +R +MKE  LKK+PG SWIE  G +  F  R  S ++  ++Y 
Sbjct: 550 IMANLYSQSGRWKDADTIRDLMKEVRLKKIPGNSWIETSGGMQRFCXRHSS-VRTPEVYG 608

Query: 616 MLDNM 620
           ML+ +
Sbjct: 609 MLEGL 613


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 185/495 (37%), Positives = 290/495 (58%), Gaps = 17/495 (3%)

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
            +H  L ++    D +L N ++      G   ++ ++F +    +   +N+MI G V + 
Sbjct: 28  HVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLND 87

Query: 200 NIESARELFDSMPIRERNL----ISWNSVLNGYAQL---KSGLQFAWQIFEKMPERDLIS 252
           + + + E++ SM  R+  L     ++  +L   A+L   K G++    + +   E D   
Sbjct: 88  SFQESIEIYHSM--RKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFV 145

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR----VDIARR---LFD 305
             S++    KCG +D+A  +FD +P+++V +W  +I GY  +G+    +D+ RR   +FD
Sbjct: 146 NTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFD 205

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
            M ++D+V+ ++M+ GY  NG   +AL++F  M  E +  PD  ++V VL A A+LG ++
Sbjct: 206 GMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGF-RPDCYAMVGVLCACARLGALE 264

Query: 366 KGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
            G      +++++F  N   G ALIDMY+KCG +++A +VF  +    +  WNA I+GLA
Sbjct: 265 LGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLA 324

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL 485
           + G  + AF L  +ME+  IEPD  TF GLL AC HAGLV EG   F  M R+  L PE+
Sbjct: 325 MSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEI 384

Query: 486 QHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIG 545
           +HYGCMVD+LGRAG ++ A  L++ MPME N ++W  LL  CR + +  + E V K LI 
Sbjct: 385 EHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIA 444

Query: 546 MDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDK 605
           ++ SNS +YVLLSN+++    W DA ++RS+M ER +KK+PG SWIE++GVVHEF V D 
Sbjct: 445 LEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGDT 504

Query: 606 SRLQVRDIYYMLDNM 620
           S      IY  L  +
Sbjct: 505 SHPLSEKIYAKLGEL 519



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/457 (24%), Positives = 227/457 (49%), Gaps = 36/457 (7%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVA-SFSSSPCTPLTEFARYI 71
           S    + L +   +L  +  +HA ++  G  ++++L  K++  SF+              
Sbjct: 9   SAHIKIRLFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTN--------- 59

Query: 72  FFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKAC 129
            + +  F + K+P  FL+N +I         +E++ ++  M   G+S D F+   +LKAC
Sbjct: 60  -YSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKAC 118

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
           +RL   + G+++HGL+ K    SD F+   L+SLY +CG+++ A ++FD +  ++  ++ 
Sbjct: 119 ARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWT 178

Query: 190 SMIDGYVKSGNIESAREL-------FDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAW 239
           ++I GY+  G    A ++       FD M   E++++SW+S++ GYA     K  L   +
Sbjct: 179 AIISGYIGVGKCREAIDMFRRACSVFDGM--LEKDIVSWSSMIQGYASNGLPKEALDLFF 236

Query: 240 QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV----VSWANMIDGYAKLG 295
           ++  +    D  +   +L  C + G ++      + M + +     V    +ID YAK G
Sbjct: 237 KMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCG 296

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
           R+D A  +F  M K+D+V  NA + G   +G+   A  +F  M+ +  + PD  + V +L
Sbjct: 297 RMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQME-KSGIEPDGNTFVGLL 355

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNG--KHGVALIDMYSKCGSIENAIKVFEQIE-DG 412
            A    G +D+G      +E+  F+L    +H   ++D+  + G ++ A ++ + +  + 
Sbjct: 356 CACTHAGLVDEGRQYFNSMER-VFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEA 414

Query: 413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD 449
           +   W A++ G  +H   +L   +L ++  +++EP +
Sbjct: 415 NAIVWGALLGGCRLHRDTQLVEGVLKQL--IALEPSN 449


>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
           Japonica Group]
          Length = 545

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 195/578 (33%), Positives = 310/578 (53%), Gaps = 79/578 (13%)

Query: 22  RKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREK 81
           R+C++L  + Q+HA M   GF+ +     +L+  F+S+          Y+ F       +
Sbjct: 16  RRCRSLRHIKQMHAVMALRGFLSDPSELRELL--FASAVAVRGAIAHAYLVFDQ---IPR 70

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG----VSVDKFSASLVLKACSRLGLIEE 137
            D F++N +I+  +H   P++A+ ++  ML  G    V  DK +   VL+AC+ +G  + 
Sbjct: 71  PDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDT 130

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G+Q+H  + K    SD F++                               N++I  +  
Sbjct: 131 GVQVHAHVVKAGCESDAFVK-------------------------------NALIGMHAS 159

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
            GN+  A  LFD    R R                                D ++W++M+
Sbjct: 160 CGNLGIAAALFDG---RARE-------------------------------DAVAWSAMI 185

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNA 317
            GC + G +  A+ LFD+ P +D+VSW  MI  YAK G + +AR LFD++P+RDVV+ N 
Sbjct: 186 TGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNV 245

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           M+ GYVR G  + ALE+F+ MQ  +   PD  +++ +LSA A  G +D G  +H  L  D
Sbjct: 246 MISGYVRCGSHLHALELFEQMQ-RMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLS-D 303

Query: 378 QFSLNGKH---GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
            FS NG     G ALIDMY+KCGS+++A +VF  + D  V  WN+++ GLA+HG    + 
Sbjct: 304 MFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESI 363

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
           D+  +M +  + PD+ITF  +L AC+H G+V +G   F LM+  +++EP ++HYGCMVD+
Sbjct: 364 DMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDM 423

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           LGRAG ++ A   I+ M  EPN VIWRTLLSACR +  + + +   + L+   +  S  Y
Sbjct: 424 LGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDESGDY 483

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           VLLSN++A +G W  + ++R +M +  + K  G ++++
Sbjct: 484 VLLSNIYASVGEWFGSEKMRKLMDDSGVNKEAGQTFVD 521


>gi|242063912|ref|XP_002453245.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
 gi|241933076|gb|EES06221.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
          Length = 603

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 178/456 (39%), Positives = 256/456 (56%), Gaps = 8/456 (1%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN 217
           N L+S Y   GYL+ A  LF +M   D VS+N+MI GY ++G ++ A+ LFD MP  E++
Sbjct: 152 NALLSGYAEHGYLKDAEDLFGRMQTPDLVSWNAMITGYTRAGMMQVAQRLFDEMP--EKD 209

Query: 218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP 277
            +SW +++ GY Q    +  AW++F+ MP+RD+++WN+M+ G V   ++DDA  LF  MP
Sbjct: 210 TVSWTAIVRGYLQ-NGDVDAAWKVFQDMPDRDVLAWNTMMSGFVVSERLDDALRLFADMP 268

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
            RD+VSW  ++ GY + G +D A   F +MP++D  + N ++ GY   G    AL +   
Sbjct: 269 DRDLVSWNTILQGYVQQGDMDGATAWFRKMPEKDEASWNTLISGYKDEG----ALNLLSE 324

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
           M    Y  PD A+  + +S  + L  +  G  +H    K  F  +     +LI MYSKCG
Sbjct: 325 MTQGGY-RPDQATWSVAISICSSLAALGCGRMVHVCTIKTGFERDALVMSSLISMYSKCG 383

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            I  A +VF+ I       WNAMI   A HGL   A  L   M +    PD  TF  +L+
Sbjct: 384 LITEASQVFDLIVQRDTVTWNAMIATYAYHGLAAEALTLFDRMTKDGFSPDHATFLSVLS 443

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
           ACAH G + EG   F  M++   L P   HY CMVD+LGR+G +  A N    +P +   
Sbjct: 444 ACAHKGYLYEGCHHFRSMQQDWNLIPRSDHYSCMVDLLGRSGFVHQAYNFTRRIPSDLQI 503

Query: 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
             W TL S+C  + ++ +GE VAK+++    S+   Y LLSN++A  GMW+ A  VR +M
Sbjct: 504 NAWETLFSSCNAHGDIQLGELVAKNVLQSRPSDGGMYTLLSNIYAAKGMWSSAASVRGLM 563

Query: 578 KERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
           KE+ LKK  GCSWIEL+G V  F   DK+   +  I
Sbjct: 564 KEQGLKKETGCSWIELKGDVVSFSSNDKAHPLIEQI 599



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 125/425 (29%), Positives = 208/425 (48%), Gaps = 35/425 (8%)

Query: 164 YVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNS 223
           + R G +  AR++FD+M  R+  ++N MI G V++G +  AR +FD+MP   RN +SW +
Sbjct: 3   HFRAGRVGAARRVFDEMSERNVFTWNCMISGLVRNGMLTDARGVFDTMPF--RNSVSWAA 60

Query: 224 VLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS 283
           +L GYA+     + A ++F++MP+R ++SWN+M+ G +  G +D A+ LFD MP R+ VS
Sbjct: 61  LLTGYARCGRVAE-ARELFDRMPDRSVVSWNAMISGYLWNGMVDRARDLFDVMPARNDVS 119

Query: 284 WANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELY 343
           W  MI GY K  RV  AR +FD  P      CNA++ GY  +GY   A ++F  MQ    
Sbjct: 120 WLMMISGYMKRKRVREAREIFDRAPSPTTSVCNALLSGYAEHGYLKDAEDLFGRMQT--- 176

Query: 344 LHPDDASLVIVLSAIAQLGHIDKGVAIHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENA 402
             PD  S   +++   + G +     +   + EKD  S       A++  Y + G ++ A
Sbjct: 177 --PDLVSWNAMITGYTRAGMMQVAQRLFDEMPEKDTVSW-----TAIVRGYLQNGDVDAA 229

Query: 403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
            KVF+ + D  V  WN M++G  +    + A  L  +M     + D +++  +L      
Sbjct: 230 WKVFQDMPDRDVLAWNTMMSGFVVSERLDDALRLFADMP----DRDLVSWNTILQGYVQQ 285

Query: 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPM---EPNDVI 519
           G +      F  M       PE         I G     E A NL+ +M      P+   
Sbjct: 286 GDMDGATAWFRKM-------PEKDEASWNTLISGYKD--EGALNLLSEMTQGGYRPDQAT 336

Query: 520 WRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS---NMFAGLGMWNDARRVRSM 576
           W   +S C +   L  G  V  H+  + +      +++S   +M++  G+  +A +V  +
Sbjct: 337 WSVAISICSSLAALGCGRMV--HVCTIKTGFERDALVMSSLISMYSKCGLITEASQVFDL 394

Query: 577 MKERN 581
           + +R+
Sbjct: 395 IVQRD 399



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 201/408 (49%), Gaps = 57/408 (13%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           ++F  NC+IS  VR G L  AR +FD M  R+SVS+ +++ GY + G +  ARELFD MP
Sbjct: 23  NVFTWNCMISGLVRNGMLTDARGVFDTMPFRNSVSWAALLTGYARCGRVAEARELFDRMP 82

Query: 213 IRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLISW------------------ 253
             +R+++SWN++++GY  L +G+   A  +F+ MP R+ +SW                  
Sbjct: 83  --DRSVVSWNAMISGY--LWNGMVDRARDLFDVMPARNDVSWLMMISGYMKRKRVREARE 138

Query: 254 -------------NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIA 300
                        N++L G  + G + DA+ LF +M   D+VSW  MI GY + G + +A
Sbjct: 139 IFDRAPSPTTSVCNALLSGYAEHGYLKDAEDLFGRMQTPDLVSWNAMITGYTRAGMMQVA 198

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLV--IVLSAI 358
           +RLFDEMP++D V+  A++ GY++NG    A ++F +M       PD   L    ++S  
Sbjct: 199 QRLFDEMPEKDTVSWTAIVRGYLQNGDVDAAWKVFQDM-------PDRDVLAWNTMMSGF 251

Query: 359 AQLGHIDKGVAIHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
                +D  + +   + ++D  S N      ++  Y + G ++ A   F ++ +     W
Sbjct: 252 VVSERLDDALRLFADMPDRDLVSWN-----TILQGYVQQGDMDGATAWFRKMPEKDEASW 306

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
           N +I+G    G    A +LL EM +    PD  T++  ++ C+    +  G +      +
Sbjct: 307 NTLISGYKDEG----ALNLLSEMTQGGYRPDQATWSVAISICSSLAALGCGRMVHVCTIK 362

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLS 525
               E +      ++ +  + G I  A  +  D+ ++ + V W  +++
Sbjct: 363 T-GFERDALVMSSLISMYSKCGLITEASQVF-DLIVQRDTVTWNAMIA 408



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 118/481 (24%), Positives = 223/481 (46%), Gaps = 41/481 (8%)

Query: 20  LLRKCKTLNDV----NQIHARMITTGFIKNTHL-TTKLVASFSSSPCTP-----LTEFAR 69
           ++ + + L DV    N +   M+ +G++K   +   + +   + SP T      L+ +A 
Sbjct: 101 MVDRARDLFDVMPARNDVSWLMMISGYMKRKRVREAREIFDRAPSPTTSVCNALLSGYAE 160

Query: 70  YIFFK--YHAFREKKDPFL--WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
           + + K     F   + P L  WNA+I  Y+     + A  +F  M +     D  S + +
Sbjct: 161 HGYLKDAEDLFGRMQTPDLVSWNAMITGYTRAGMMQVAQRLFDEMPEK----DTVSWTAI 216

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           ++   + G ++   ++   +       D+   N ++S +V    L+ A +LF  M  RD 
Sbjct: 217 VRGYLQNGDVDAAWKVFQDMPD----RDVLAWNTMMSGFVVSERLDDALRLFADMPDRDL 272

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM 245
           VS+N+++ GYV+ G+++ A   F  MP  E++  SWN++++GY   +  L    ++ +  
Sbjct: 273 VSWNTILQGYVQQGDMDGATAWFRKMP--EKDEASWNTLISGYKD-EGALNLLSEMTQGG 329

Query: 246 PERDLISWNSMLHGC-----VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIA 300
              D  +W+  +  C     + CG+M     +     +RD +  +++I  Y+K G +  A
Sbjct: 330 YRPDQATWSVAISICSSLAALGCGRMVHVCTIKTGF-ERDALVMSSLISMYSKCGLITEA 388

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
            ++FD + +RD V  NAM+  Y  +G + +AL +FD M  + +  PD A+ + VLSA A 
Sbjct: 389 SQVFDLIVQRDTVTWNAMIATYAYHGLAAEALTLFDRMTKDGF-SPDHATFLSVLSACAH 447

Query: 361 LGHIDKGVAIHRYLEKD-QFSLNGKHGVALIDMYSKCGSIENAIKVFEQI-EDGSVDHWN 418
            G++ +G    R +++D        H   ++D+  + G +  A     +I  D  ++ W 
Sbjct: 448 KGYLYEGCHHFRSMQQDWNLIPRSDHYSCMVDLLGRSGFVHQAYNFTRRIPSDLQINAWE 507

Query: 419 AMINGLAIHG---LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            + +    HG   LGEL    +++    S   D   +T L N  A  G+         LM
Sbjct: 508 TLFSSCNAHGDIQLGELVAKNVLQ----SRPSDGGMYTLLSNIYAAKGMWSSAASVRGLM 563

Query: 476 R 476
           +
Sbjct: 564 K 564


>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic [Vitis vinifera]
 gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
          Length = 533

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 175/459 (38%), Positives = 275/459 (59%), Gaps = 7/459 (1%)

Query: 168 GYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR---ERNLISWNSV 224
           G + +A  +F ++   +  S+N++I G+ +S     A  LF  M I    + + +++ SV
Sbjct: 72  GDINYAYLVFTQIHSPNLFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSV 131

Query: 225 LNGYAQL---KSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV 281
              YAQL     G Q   ++ +   + D    N++++    CG + +    F +    D+
Sbjct: 132 FKAYAQLGLAHYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDI 191

Query: 282 VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
           V+W +MI G AK G VD +R+LFDEMP R+ V+ N+M+ GYVRNG   +AL++F  MQ E
Sbjct: 192 VAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQ-E 250

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIEN 401
             + P + ++V +L+A A+LG + +G  IH Y+ K+ F LN     ++IDMY KCGSI  
Sbjct: 251 ERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGE 310

Query: 402 AIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461
           A +VFE      +  WN MI GLA++G    A  L   +E  ++ PDD+TF G+L AC +
Sbjct: 311 AFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNY 370

Query: 462 AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWR 521
           +GLV +    F LM + +K+EP ++HY CMVD LGRAG +E A  LI +MP+ P+ +IW 
Sbjct: 371 SGLVDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWS 430

Query: 522 TLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581
           +LLSACR + N+ + +  AKH++ +D ++S  YVLLSN++A    + +A   R  MKE+ 
Sbjct: 431 SLLSACRKHGNVELAKRAAKHIVDLDGNDSCGYVLLSNIYAASDQFEEAMEQRLSMKEKQ 490

Query: 582 LKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           ++K PGCS IE+ G +HEF    +   Q +++Y +L+ +
Sbjct: 491 IEKEPGCSLIEVNGEIHEFVAGGRLHPQAQEVYSLLNEL 529


>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 198/598 (33%), Positives = 322/598 (53%), Gaps = 19/598 (3%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           Q+HAR+I        +L +KLVA +S    T    FARY+F +       K+ F +NA++
Sbjct: 45  QLHARLILFSVTPENYLASKLVALYSK---TNHLAFARYVFDQI----PHKNTFSYNAML 97

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL--IEEGLQIHGLLRKVA 149
            +YS      +AL +F  +  + + V+  S + +LK+ S   L  ++ G ++HG + +  
Sbjct: 98  ISYSLHNRHGDALDLFSSLASSNL-VNNISITCLLKSLSSFTLSDVKLGKEVHGFVLRTG 156

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESA----R 205
           F +D+F++N LI+ Y +C  L+ +R++FD+M  RD VS+NSMI GY + G  E      R
Sbjct: 157 FDADVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYR 216

Query: 206 ELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHGCVK 262
           E+ D    R  N ++  SVL    Q   L  G++    I +   E D+   N+++    K
Sbjct: 217 EMVDFSGFRP-NGVTVVSVLQACGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAK 275

Query: 263 CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGY 322
           CG +D A+ LFD+M ++D V++  +I G    G VD +  LF  M  + +   NA++ G 
Sbjct: 276 CGSLDYARELFDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGL 335

Query: 323 VRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN 382
           V+N      L++   MQ  L   P+  +L  VLS IA    +  G  IH Y  K  +  N
Sbjct: 336 VQNNRHEGVLDLVREMQA-LGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRN 394

Query: 383 GKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMER 442
                A+IDMY+K G +  A +VF+Q +D S+  W A+I+  A+HG   LA  L  EM +
Sbjct: 395 IYVATAIIDMYAKSGYLRGAQRVFDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLK 454

Query: 443 LSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIE 502
             I+PD +TFT +L ACAH G+V +    FE M + + ++P ++HY C+V  LG+A  + 
Sbjct: 455 QGIQPDPVTFTAVLAACAHCGMVDKAWEIFESMFKKYGIQPLVEHYACVVGALGKARRLS 514

Query: 503 AARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA 562
            A+  +  MP+EP+  +W  LL       ++ +G+ V  +L  ++  N+ +YV+++N+++
Sbjct: 515 EAKEFVSKMPIEPSAKVWGALLHGASISSDVELGKSVCDYLFEIEPENTGNYVIMANLYS 574

Query: 563 GLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
             G W +A  VR  M +  L+K+PG SWIE    +  F   D     V +I+ +L  +
Sbjct: 575 QAGRWKEADEVRERMNKVGLQKIPGSSWIETSEGLRSFIATDTCTENVEEIHVILKGL 632



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/457 (23%), Positives = 209/457 (45%), Gaps = 86/457 (18%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +L   + L L  +  Q+H  L   +   + +L + L++LY +  +L FAR +FD++  ++
Sbjct: 30  LLHHLTELRLPLQAKQLHARLILFSVTPENYLASKLVALYSKTNHLAFARYVFDQIPHKN 89

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSV------LNGY--AQLKSGLQ 236
           + SYN+M+  Y        A +LF S+     NL++  S+      L+ +  + +K G +
Sbjct: 90  TFSYNAMLISYSLHNRHGDALDLFSSLA--SSNLVNNISITCLLKSLSSFTLSDVKLGKE 147

Query: 237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR 296
               +     + D+   N+++    KC  +D ++ +FD+M KRDVVSW +MI GY++ G 
Sbjct: 148 VHGFVLRTGFDADVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISGYSQGGL 207

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
            +  + L+ EM             G+                       P+  ++V VL 
Sbjct: 208 YEDCKTLYREMVD---------FSGF----------------------RPNGVTVVSVLQ 236

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED----- 411
           A  Q   +  G+ +H+++  +Q  ++     ALI +Y+KCGS++ A ++F+++ +     
Sbjct: 237 ACGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKDEVT 296

Query: 412 -----------GSVDH---------------WNAMINGLAIHGLGELAFDLLMEMERLSI 445
                      G VD                WNA+I GL  +   E   DL+ EM+ L  
Sbjct: 297 YGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQALGF 356

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY------GCMVDILGRAG 499
            P+ +T + +L+  A+   +K G       + IH    ++ ++        ++D+  ++G
Sbjct: 357 RPNAVTLSSVLSTIAYFSSLKGG-------KEIHSYAIKIGYHRNIYVATAIIDMYAKSG 409

Query: 500 HIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
           ++  A+ +  D   + + VIW  ++SA   + + N+ 
Sbjct: 410 YLRGAQRVF-DQSKDRSLVIWTAIISAYAVHGDANLA 445


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 210/680 (30%), Positives = 337/680 (49%), Gaps = 88/680 (12%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           LL+ C    D+    Q+H  ++  G   N ++T  L+  ++   C  + E AR +F K+ 
Sbjct: 34  LLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAH--CGSVNE-ARQLFDKF- 89

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
                K    WN +I  Y+H    +EA  +F LM    +  DKF+   +L ACS   ++ 
Sbjct: 90  ---SNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLN 146

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G +IH  + +    +D  + N LIS+Y +CG +  AR++FD M  RD VS+ ++   Y 
Sbjct: 147 WGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYA 206

Query: 197 KSGNIESARELFDSMPIRER---NLISWNSVLNG---YAQLKSGLQF------------- 237
           +SG  E + + + +M ++ER   + I++ +VL+     A L+ G Q              
Sbjct: 207 ESGYGEESLKTYHAM-LQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDV 265

Query: 238 ------------------AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM--- 276
                             A ++FE +  RD+I+WN+M+ G V  G++++A   F +M   
Sbjct: 266 RVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEE 325

Query: 277 ---PKR---------------------------------DVVSWANMIDGYAKLGRVDIA 300
              P R                                 DV     +I+ Y+K G +  A
Sbjct: 326 GVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDA 385

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
           R++FD MPKRDVV+   ++G Y      +++   F  M  +  +  +  + + VL A + 
Sbjct: 386 RQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQM-LQQGVKANKITYMCVLKACSN 444

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
              +  G  IH  + K     +     AL+ MY KCGS+E+AI+VFE +    V  WN +
Sbjct: 445 PVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTL 504

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           I GL  +G G  A      M+   + P+  TF  +L+AC    LV+EG   F  M + + 
Sbjct: 505 IGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYG 564

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           + P  +HY CMVDIL RAGH+  A ++I  +P++P+  +W  LL+ACR + N+ +GE  A
Sbjct: 565 IVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAA 624

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
           +H + ++  N+  YV LS ++A  GMW D  ++R  MKER +KK PG SWIE+ G VH F
Sbjct: 625 EHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSF 684

Query: 601 FVRDKSRLQVRDIYYMLDNM 620
             RD+S  + ++IY  L+ +
Sbjct: 685 VARDQSHPRTQEIYAELETL 704



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 192/421 (45%), Gaps = 47/421 (11%)

Query: 113 NGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF 172
            G  VD +    +L++C +   +  G Q+H  + +     ++++ N L+ LY  CG +  
Sbjct: 22  KGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNE 81

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRER------NLISWNSVLN 226
           ARQLFDK   +  VS+N MI GY   G  + A  LF  M  +ER        +S  S  +
Sbjct: 82  ARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQ-QERLEPDKFTFVSILSACS 140

Query: 227 GYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN 286
             A L  G +   ++ E     D    N+++    KCG + DA+ +FD M  RD VSW  
Sbjct: 141 SPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTT 200

Query: 287 MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP 346
           +                                G Y  +GY  ++L+ +  M  E  + P
Sbjct: 201 LT-------------------------------GAYAESGYGEESLKTYHAMLQE-RVRP 228

Query: 347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVF 406
              + + VLSA   L  ++KG  IH ++ + ++  + +   AL  MY KCG+ ++A +VF
Sbjct: 229 SRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVF 288

Query: 407 EQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVK 466
           E +    V  WN MI G    G  E A      M    + PD  T+T +L+ACA  G + 
Sbjct: 289 ECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLA 348

Query: 467 EGLLCFELMRRIHK--LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WRTL 523
            G    E+  R  K  L  +++    ++++  +AG ++ AR + + MP    DV+ W TL
Sbjct: 349 RGK---EIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMP--KRDVVSWTTL 403

Query: 524 L 524
           L
Sbjct: 404 L 404


>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 907

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 167/463 (36%), Positives = 281/463 (60%), Gaps = 4/463 (0%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN 217
           N +I+ YV+   ++ A +LF +   +D VS+ +MI+GYV+ G ++ ARE+++ MP ++  
Sbjct: 270 NAMIAAYVQDLQIDEAVKLFKETPYKDCVSWTTMINGYVRVGKLDEAREVYNQMPYKD-- 327

Query: 218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP 277
           + +  ++++G  Q    +  A Q+F ++ +RD I WNSM+ G  + G+M +A  LF +MP
Sbjct: 328 VAAKTALMSGLIQ-NGRIDEASQVFSQLNKRDAICWNSMIAGYCQSGRMSEALNLFRQMP 386

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
            ++ VSW  MI GYA+ G +D A  +F+ M  R+V++ N+++ G+++NG  + AL+    
Sbjct: 387 VKNAVSWNTMISGYAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNGLYLDALKSLVL 446

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
           M  E    PD ++    LS+ A L  +  G  +H  + K  +  +     ALI MY+KCG
Sbjct: 447 MGQEGK-KPDQSTFACSLSSCANLAALQVGKQLHELILKSGYINDLFVSNALIAMYAKCG 505

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            +++A KVF+ IE   +  WN++I+G A++G    AF    +M      PD++TF G+L+
Sbjct: 506 GVQSAEKVFKDIEGVDLISWNSLISGYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLS 565

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
           AC+HAGL  +G+  F+ M     +EP  +HY C+VD+LGR G +E A N++  M ++ N 
Sbjct: 566 ACSHAGLTNQGVDLFKCMIEGFAIEPLAEHYSCLVDLLGRMGRLEEAFNIVRGMKVKANA 625

Query: 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
            +W +LL+ACR ++N+ +G+  A  L+ ++  N+S+Y+ LSNM A  G W D  R+R +M
Sbjct: 626 GLWGSLLAACRVHKNMELGKIAALRLLELEPHNASNYITLSNMHAEAGRWEDVERLRVLM 685

Query: 578 KERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +ER   KLPGCSWIE++  +  F   D  +L+   I  +L+ +
Sbjct: 686 RERRAGKLPGCSWIEVQNQIQNFVSDDPGKLRTESIKIILNTL 728



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 147/495 (29%), Positives = 255/495 (51%), Gaps = 52/495 (10%)

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           AR +F K      +++   WN +I  Y H    +EA  +F LM +     D FS +L++ 
Sbjct: 67  ARQLFDKM----SQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMAER----DNFSWALMIT 118

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
             +R G++E+  ++  L   V    D    N +I+ Y + G  + A ++F+KM ++D VS
Sbjct: 119 CYTRKGMLEKARELFEL---VPDKLDTACWNAMIAGYAKKGRFDDAEKVFEKMPVKDLVS 175

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
           YNSM+ GY ++G +  A + F+ M   ERN++SWN ++ G+      L  AW++FEK+P+
Sbjct: 176 YNSMLAGYTQNGKMGLAMKFFERMA--ERNVVSWNLMVAGFVN-NCDLGSAWELFEKIPD 232

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
            + +SW +ML G  + GK+ +A+ LFD+MP ++VVSW  MI  Y +  ++D A +LF E 
Sbjct: 233 PNAVSWVTMLCGFARHGKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKET 292

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
           P +D V+   M+ GYVR G   +A E+++ M      + D A+   ++S + Q G ID+ 
Sbjct: 293 PYKDCVSWTTMINGYVRVGKLDEAREVYNQMP-----YKDVAAKTALMSGLIQNGRIDEA 347

Query: 368 VAIHRYLEKDQ----------FSLNGKHGVAL-----------------IDMYSKCGSIE 400
             +   L K            +  +G+   AL                 I  Y++ G ++
Sbjct: 348 SQVFSQLNKRDAICWNSMIAGYCQSGRMSEALNLFRQMPVKNAVSWNTMISGYAQAGEMD 407

Query: 401 NAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460
            A ++FE +   +V  WN++I G   +GL   A   L+ M +   +PD  TF   L++CA
Sbjct: 408 RATEIFEAMGVRNVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCA 467

Query: 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI- 519
           +   ++ G    EL+ +   +  +L     ++ +  + G +++A  + +D  +E  D+I 
Sbjct: 468 NLAALQVGKQLHELILKSGYIN-DLFVSNALIAMYAKCGGVQSAEKVFKD--IEGVDLIS 524

Query: 520 WRTLLS--ACRNYEN 532
           W +L+S  A   Y N
Sbjct: 525 WNSLISGYALNGYAN 539



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 124/428 (28%), Positives = 214/428 (50%), Gaps = 28/428 (6%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN 217
           N +++++ + G +  ARQLFDKM  R+ VS+N+MI GY+ +  +E A +LFD M   ER+
Sbjct: 52  NSMVTVFAKNGRVSDARQLFDKMSQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMA--ERD 109

Query: 218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPER-DLISWNSMLHGCVKCGKMDDAQALFDKM 276
             SW  ++  Y + K  L+ A ++FE +P++ D   WN+M+ G  K G+ DDA+ +F+KM
Sbjct: 110 NFSWALMITCYTR-KGMLEKARELFELVPDKLDTACWNAMIAGYAKKGRFDDAEKVFEKM 168

Query: 277 PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFD 336
           P +D+VS+ +M+ GY + G++ +A + F+ M +R+VV+ N M+ G+V N     A E+F+
Sbjct: 169 PVKDLVSYNSMLAGYTQNGKMGLAMKFFERMAERNVVSWNLMVAGFVNNCDLGSAWELFE 228

Query: 337 NMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI-HRYLEKDQFSLNGKHGVALIDMYSK 395
            +       P+  S V +L   A+ G I +   +  R   K+  S N     A+I  Y +
Sbjct: 229 KIP-----DPNAVSWVTMLCGFARHGKIVEARKLFDRMPCKNVVSWN-----AMIAAYVQ 278

Query: 396 CGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGL 455
              I+ A+K+F++        W  MING    G  + A ++  +M    +       +GL
Sbjct: 279 DLQIDEAVKLFKETPYKDCVSWTTMINGYVRVGKLDEAREVYNQMPYKDVAAKTALMSGL 338

Query: 456 LNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEP 515
           +      G + E    F  + +   +      +  M+    ++G +  A NL   MP++ 
Sbjct: 339 I----QNGRIDEASQVFSQLNKRDAI-----CWNSMIAGYCQSGRMSEALNLFRQMPVK- 388

Query: 516 NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRS 575
           N V W T++S    Y      +   +    M   N  S+  L   F   G++ DA +   
Sbjct: 389 NAVSWNTMISG---YAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNGLYLDALKSLV 445

Query: 576 MMKERNLK 583
           +M +   K
Sbjct: 446 LMGQEGKK 453



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 156/321 (48%), Gaps = 21/321 (6%)

Query: 262 KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
           K GK+D+A+ +F  +  ++  ++ +M+  +AK GRV  AR+LFD+M +R++V+ N M+ G
Sbjct: 29  KQGKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKMSQRNLVSWNTMIAG 88

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
           Y+ N    +A ++FD     L    D+ S  ++++   + G ++K   +   +      L
Sbjct: 89  YLHNNMVEEAHKLFD-----LMAERDNFSWALMITCYTRKGMLEKARELFELVPD---KL 140

Query: 382 NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEME 441
           +     A+I  Y+K G  ++A KVFE++    +  +N+M+ G   +G   LA      M 
Sbjct: 141 DTACWNAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMA 200

Query: 442 RLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHI 501
             ++   ++   G +N C            +EL  +I   +P    +  M+    R G I
Sbjct: 201 ERNVVSWNLMVAGFVNNCDLGS-------AWELFEKIP--DPNAVSWVTMLCGFARHGKI 251

Query: 502 EAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF 561
             AR L + MP + N V W  +++A    ++L + E V K        +  S+  + N +
Sbjct: 252 VEARKLFDRMPCK-NVVSWNAMIAAY--VQDLQIDEAV-KLFKETPYKDCVSWTTMINGY 307

Query: 562 AGLGMWNDARRVRSMMKERNL 582
             +G  ++AR V + M  +++
Sbjct: 308 VRVGKLDEAREVYNQMPYKDV 328



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 122/286 (42%), Gaps = 59/286 (20%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           WN++I  +       +AL    LM   G   D+ + +  L +C+ L  ++ G Q+H L+ 
Sbjct: 424 WNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANLAALQVGKQLHELIL 483

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           K  + +DLF+ N LI++Y +CG ++ A ++F  +   D +S+NS+I GY           
Sbjct: 484 KSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEGVDLISWNSLISGY----------- 532

Query: 207 LFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER----DLISWNSMLHGCVK 262
                             LNGYA        A+  FE+M       D +++  ML  C  
Sbjct: 533 -----------------ALNGYANE------AFWAFEQMSSEGTVPDEVTFIGMLSACSH 569

Query: 263 CGKMDDAQALFDKMPKRDVVS-----WANMIDGYAKLGRVDIARRLFDEMPKRDVVACNA 317
            G  +    LF  M +   +      ++ ++D   ++GR++ A  +   M     V  NA
Sbjct: 570 AGLTNQGVDLFKCMIEGFAIEPLAEHYSCLVDLLGRMGRLEEAFNIVRGMK----VKANA 625

Query: 318 MMGGYVRNGYSMKALEIFDNMQCE-------LYLHPDDASLVIVLS 356
            + G +     + A  +  NM+         L L P +AS  I LS
Sbjct: 626 GLWGSL-----LAACRVHKNMELGKIAALRLLELEPHNASNYITLS 666



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 10/154 (6%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           Q+H  ++ +G+I +  ++  L+A ++        E       K     E  D   WN++I
Sbjct: 477 QLHELILKSGYINDLFVSNALIAMYAKCGGVQSAE-------KVFKDIEGVDLISWNSLI 529

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
             Y+      EA   F  M   G   D+ +   +L ACS  GL  +G+ +   + +  F 
Sbjct: 530 SGYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDLFKCMIE-GFA 588

Query: 152 SDLFLQ--NCLISLYVRCGYLEFARQLFDKMGIR 183
            +   +  +CL+ L  R G LE A  +   M ++
Sbjct: 589 IEPLAEHYSCLVDLLGRMGRLEEAFNIVRGMKVK 622


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 175/480 (36%), Positives = 278/480 (57%), Gaps = 12/480 (2%)

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLI---SLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
           I E  Q H  + K       F  + LI   S       + +A  +F ++   +S  +N++
Sbjct: 20  ISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTI 79

Query: 192 IDGYVKSGNIESARELFDSM------PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM 245
           I  Y  S   E+A  +F  M      P +     +  S    ++ ++ G Q    + +  
Sbjct: 80  IRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSC-GSFSGVEEGRQIHGHVLKTG 138

Query: 246 PERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIA-RRLF 304
              DL   N+++H    CG ++DA+ L D+M +RDVVSW  ++  YA+ G +++A RR+F
Sbjct: 139 LGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRRVF 198

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
            E P ++VV+ NAM+ GY   G   + L +F++MQ    + PD+ +LV VLSA A +G +
Sbjct: 199 GETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQ-HAGVKPDNCTLVSVLSACAHVGAL 257

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
            +G  +H Y++K+  S++G    AL+DMYSKCGSIE A++VF       +  WN++I+GL
Sbjct: 258 SQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGL 317

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
           + HG G+ A  +  EM     +P+++TF  +L+AC+ AGL+ EG   F LM  +H ++P 
Sbjct: 318 STHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPT 377

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
           ++HYGCMVD+LGR G +E A  L++ MP +   V+W +LL ACRN+ N+ + E VA+ L+
Sbjct: 378 IEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLL 437

Query: 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
            +    SSS+V LSNM+A +G W D   VR  M+ + ++K PGCS IE++G V+EF   +
Sbjct: 438 ELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVYEFLAGE 497



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 133/467 (28%), Positives = 243/467 (52%), Gaps = 30/467 (6%)

Query: 26  TLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPF 85
           ++++++Q HA ++ +G I +T   ++L+AS S++       +A  IF +        + +
Sbjct: 19  SISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRI----PNPNSY 74

Query: 86  LWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
           +WN II+ Y++   P+ AL +F  ML   V  DK++ +  LK+C     +EEG QIHG +
Sbjct: 75  MWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHV 134

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE-SA 204
            K   G DLF+QN LI LY  CG +E AR L D+M  RD VS+N+++  Y + G +E ++
Sbjct: 135 LKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELAS 194

Query: 205 RELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLISWNSMLHGC 260
           R +F   P+  +N++SWN+++ GY+           +FE M     + D  +  S+L  C
Sbjct: 195 RRVFGETPV--KNVVSWNAMITGYSH-AGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSAC 251

Query: 261 VKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
              G +   + +   + K     D      ++D Y+K G ++ A  +F+   ++D+   N
Sbjct: 252 AHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWN 311

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
           +++ G   +G    AL+IF  M  E +  P++ + V VLSA ++ G +D+G    R +  
Sbjct: 312 SIISGLSTHGSGQHALQIFSEMLVEGF-KPNEVTFVCVLSACSRAGLLDEG----REMFN 366

Query: 377 DQFSLNG-----KHGVALIDMYSKCGSIENAIKVFEQI--EDGSVDHWNAMINGLAIHGL 429
               ++G     +H   ++D+  + G +E A ++ +++  ++ SV  W +++     HG 
Sbjct: 367 LMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVV-WESLLGACRNHGN 425

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
            ELA  +  ++  LS + +  +F  L N  A  G  K+ +   + MR
Sbjct: 426 VELAERVAQKLLELSPQ-ESSSFVQLSNMYASMGRWKDVMEVRQKMR 471


>gi|15240281|ref|NP_198573.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170664|sp|Q9FHR3.1|PP403_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g37570
 gi|9757967|dbj|BAB08303.1| unnamed protein product [Arabidopsis thaliana]
 gi|332006824|gb|AED94207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 550

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 201/577 (34%), Positives = 318/577 (55%), Gaps = 49/577 (8%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           L + CK+   +NQIHAR+I  G  ++ +L +  ++S SSS  +     +         F 
Sbjct: 16  LFKLCKSEIHLNQIHARIIRKGLEQDQNLISIFISSSSSSSSSLSYSSS--------VFE 67

Query: 80  EKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVS-VDKFSASLVLKACSRLGLIE 136
               P  +LWN +IK YS+     E + +   M+  G++  D+++  LV+K CS  G + 
Sbjct: 68  RVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVR 127

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G  +HGL+ ++ F  D+ +    +  Y +C      + LF                   
Sbjct: 128 VGSSVHGLVLRIGFDKDVVVGTSFVDFYGKC------KDLF------------------- 162

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNS 255
                 SAR++F  MP  ERN +SW +++  Y  +KSG L+ A  +F+ MPER+L SWN+
Sbjct: 163 ------SARKVFGEMP--ERNAVSWTALVVAY--VKSGELEEAKSMFDLMPERNLGSWNA 212

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           ++ G VK G + +A+ LFD+MPKRD++S+ +MIDGYAK G +  AR LF+E    DV A 
Sbjct: 213 LVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYAKGGDMVSARDLFEEARGVDVRAW 272

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           +A++ GY +NG   +A ++F  M C   + PD+  +V ++SA +Q+G  +    +  YL 
Sbjct: 273 SALILGYAQNGQPNEAFKVFSEM-CAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSYLH 331

Query: 376 KDQFSLNGKHGV-ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
           +     +  + V ALIDM +KCG ++ A K+FE++    +  + +M+ G+AIHG G  A 
Sbjct: 332 QRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAI 391

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
            L  +M    I PD++ FT +L  C  + LV+EGL  FELMR+ + +     HY C+V++
Sbjct: 392 RLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLRYFELMRKKYSILASPDHYSCIVNL 451

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           L R G ++ A  LI+ MP E +   W +LL  C  + N  + E VA+HL  ++  ++ SY
Sbjct: 452 LSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIAEVVARHLFELEPQSAGSY 511

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           VLLSN++A L  W D   +R  M E  + K+ G SWI
Sbjct: 512 VLLSNIYAALDRWTDVAHLRDKMNENGITKICGRSWI 548


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 207/689 (30%), Positives = 331/689 (48%), Gaps = 91/689 (13%)

Query: 19  LLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF------ 72
           L LR+  +L     +H  +IT GF  + H+  +L+  +  S      ++AR +F      
Sbjct: 23  LPLRR-TSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSS---ELDYARQLFDEISEP 78

Query: 73  -------------------FKYHAFREK----KDPFLWNAIIKTYSHGLDPKEALVMFCL 109
                                   F E     +D  ++NA+I  +SH  D   A+ +FC 
Sbjct: 79  DKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCK 138

Query: 110 MLDNGVSVDKFSASLVLKACSRLGLI----EEGLQIHGLLRKVAFGSDLFLQNCLISLYV 165
           M   G   D F+ + VL     L L+    ++ +Q H    K   G    + N L+S+Y 
Sbjct: 139 MKHEGFKPDDFTYASVLAG---LALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYS 195

Query: 166 RCG----YLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISW 221
           RC      L  AR++FD +  +D  S+ +M+ GYVK+G  +  +EL   M      L+++
Sbjct: 196 RCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMD-ENMKLVAY 254

Query: 222 NSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHGCV----------------- 261
           N++++GY      +  L+   ++     E D  ++ S++  C                  
Sbjct: 255 NAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLR 314

Query: 262 -----------------KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
                            KCGK ++A+A+F+KMP +D+VSW  ++ GY   G +  A+ +F
Sbjct: 315 REDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIF 374

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
            EM ++++++   M+ G   NG+  + L++F  M+ E +  P D +    + + A LG  
Sbjct: 375 KEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGF-EPCDYAFSGAIKSCAVLGAY 433

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
             G   H  L K  F  +   G ALI MY+KCG +E A +VF  +       WNA+I  L
Sbjct: 434 CNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAAL 493

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
             HG G  A D+  EM +  I PD ITF  +L AC+HAGLV +G   F  M  ++++ P 
Sbjct: 494 GQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPG 553

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
             HY  ++D+L R+G    A ++IE +P +P   IW  LLS CR + N+ +G   A  L 
Sbjct: 554 ADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLF 613

Query: 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
           G+   +  +Y+LLSNM+A  G W +  RVR +M++R +KK   CSWIE+E  VH F V D
Sbjct: 614 GLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDD 673

Query: 605 KSRLQVRDIYYMLDNM--------WTPDS 625
            S  +   +Y  L ++        + PD+
Sbjct: 674 TSHPEAEAVYKYLQDLGKEMRRLGYVPDT 702



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 124/487 (25%), Positives = 211/487 (43%), Gaps = 83/487 (17%)

Query: 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQL 176
            ++++A+L L    R   ++    +HG +    F     + N LI +Y +   L++ARQL
Sbjct: 12  ANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQL 71

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQ 236
           FD++   D ++  +M+ GY  SG+I  AR +F+  P+  R+ + +N+++ G++    G  
Sbjct: 72  FDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYS 131

Query: 237 FAWQIFEKMPER----DLISWNSMLHG----------CV--------------------- 261
            A  +F KM       D  ++ S+L G          CV                     
Sbjct: 132 -AINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNAL 190

Query: 262 -----KCGK----MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR-D 311
                +C      +  A+ +FD +P++D  SW  M+ GY K G  D+ + L   M +   
Sbjct: 191 VSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMK 250

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           +VA NAM+ GYV  G   +ALE+   M     +  D+ +   V+ A A    +  G  +H
Sbjct: 251 LVAYNAMISGYVNCGLYQEALEMVRRMVSS-GIELDEFTYPSVIRACANARLLQLGKQVH 309

Query: 372 RY-LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA----------- 419
            Y L ++ FS +  +  +L+ +Y KCG    A  +FE++    +  WNA           
Sbjct: 310 AYVLRREDFSFHFDN--SLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHI 367

Query: 420 --------------------MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
                               MI+GLA +G GE    L   M+R   EP D  F+G + +C
Sbjct: 368 GEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSC 427

Query: 460 AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI 519
           A  G    G      + +I   +  L     ++ +  + G +E A+ +   MP   + V 
Sbjct: 428 AVLGAYCNGQQFHAQLVKI-GFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPC-LDSVS 485

Query: 520 WRTLLSA 526
           W  L++A
Sbjct: 486 WNALIAA 492



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 127/300 (42%), Gaps = 50/300 (16%)

Query: 16  STLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           S + L  KC   N+   I  +M     +    L +  V+S            A+ IF + 
Sbjct: 325 SLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGE-------AKLIFKEM 377

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
               ++K+   W  +I   +     +E L +F  M   G     ++ S  +K+C+ LG  
Sbjct: 378 ----KEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAY 433

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
             G Q H  L K+ F S L   N LI++Y +CG +E A+Q+F  M   DSVS+N++I   
Sbjct: 434 CNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAAL 493

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
            + G+   A ++++ M                   LK G++         P+R  I++ +
Sbjct: 494 GQHGHGVEAVDVYEEM-------------------LKKGIR---------PDR--ITFLT 523

Query: 256 MLHGCVKCGKMDDAQALFDKM-------PKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           +L  C   G +D  +  F+ M       P  D   +A +ID   + G+   A  + + +P
Sbjct: 524 VLTACSHAGLVDQGRKYFNSMETVYRIPPGAD--HYARLIDLLCRSGKFSEAESIIESLP 581


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 200/641 (31%), Positives = 335/641 (52%), Gaps = 53/641 (8%)

Query: 25  KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDP 84
           +++   +Q+HA + T+G I +      L++S +++   P     RY+   +         
Sbjct: 10  RSVRQASQLHALLTTSGRIAHRPSAEHLLSSLTNTISAP--RHLRYVLSLFDRLPHSTT- 66

Query: 85  FLWNAIIKT---YSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL-- 139
           FL++  ++     S G D    +++   M   GV    F+   V + C+       GL  
Sbjct: 67  FLFDTALRACLQASAGAD--HPVLLLRRMRSGGVRTGAFTFHFVFRCCAAGARARAGLCL 124

Query: 140 QIHGL-LRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
            +H   LR +   +   + N LI +Y   G  + AR+ FD++  +D+V + ++I G V+ 
Sbjct: 125 MLHAACLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRW 184

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQ---IFEKMPERDLISWNS 255
           G ++ AR L    P  ERN++SW S++ GY++        +    +       D ++   
Sbjct: 185 GLLDEARRLLVQAP--ERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIG 242

Query: 256 MLHGC-----------------------------------VKCGKMDDAQALFDKMPK-R 279
            L  C                                    KCG +  AQA+FD + + +
Sbjct: 243 ALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQ 302

Query: 280 DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQ 339
               W  +IDGY KLG VD+AR LFD+M  RDV+  N+M+ GY+ +G    AL++F  M+
Sbjct: 303 KPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMR 362

Query: 340 CELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSI 399
               +  D+ ++V +L+A A LG +  G A+H  +E+     +   G AL+DMY KCG +
Sbjct: 363 -RHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRV 421

Query: 400 ENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
           + A  VF ++ +  V  W AMI GLA +G+G+ A +   +M+R   +P  +T+  +L AC
Sbjct: 422 DEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTAC 481

Query: 460 AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI 519
           +H+ L+ EG L F  MR +HKL P+++HYGCM+D+L R+G ++ A +L++ MPM+PN VI
Sbjct: 482 SHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVI 541

Query: 520 WRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579
           W ++LSACR ++N+++    A+HL+ +     + YV L N++     W DA+RVR +M+E
Sbjct: 542 WGSILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWADAKRVRMLMEE 601

Query: 580 RNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           R +KK  G S I + G VH+F   D+S     +I  M++ +
Sbjct: 602 RGVKKTAGYSSITVAGQVHKFVANDQSHPWTLEIMAMMEEI 642


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 206/639 (32%), Positives = 333/639 (52%), Gaps = 69/639 (10%)

Query: 6   NYNQPCNSTQSTLLLLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCT 62
           NY  P         ++R C+ L ++     IH  +   G   +  +   LV  +    C 
Sbjct: 30  NYTLP--------FVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVK--CR 79

Query: 63  PLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSA 122
            + E AR++F K     +++D   W  +I  Y+      E+LV+F  M + GV  DK + 
Sbjct: 80  EI-EDARFLFDKM----QERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAM 134

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI 182
             V+ AC++LG + +   I   +++  F  D+ L                          
Sbjct: 135 VTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGT------------------------ 170

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIF 242
                  +MID Y K G +ESARE+FD M   E+N+ISW++++  Y     G + A  +F
Sbjct: 171 -------AMIDMYAKCGCVESAREIFDRM--EEKNVISWSAMIAAYGYHGQGRK-ALDLF 220

Query: 243 EKMPER----DLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKL 294
             M       D I+  S+L+ C     +   + +   + K     D    A ++D Y K 
Sbjct: 221 RMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKC 280

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
             ++ AR LFD+MP+RD+V    M+GGY   G + ++L +FD M+ E  + PD  ++V V
Sbjct: 281 REIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVV-PDKVAMVTV 339

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
           + A A+LG + K   I  Y+++ +F L+   G A+IDM++KCG +E+A ++F+++E+ +V
Sbjct: 340 VFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNV 399

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
             W+AMI     HG G  A DL   M R  I P+ IT   LL AC+HAGLV+EGL  F L
Sbjct: 400 ISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSL 459

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534
           M   + +  +++HY C+VD+LGRAG ++ A  LIE M +E ++ +W   L ACR ++++ 
Sbjct: 460 MWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVV 519

Query: 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           + E  A  L+ +   N   Y+LLSN++A  G W D  + R +M +R LKK+PG +WIE++
Sbjct: 520 LAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVD 579

Query: 595 GVVHEFFVRDKSRLQVRDIYYMLDNM--------WTPDS 625
              H+F V D +  + ++IY ML ++        + PD+
Sbjct: 580 NKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDT 618



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 120/422 (28%), Positives = 200/422 (47%), Gaps = 47/422 (11%)

Query: 114 GVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFA 173
           G   D ++   V++AC  L  ++ G  IH ++ K     D F+   L+ +YV+C  +E A
Sbjct: 25  GARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDA 84

Query: 174 RQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLI--SWNSVLNGYAQL 231
           R LFDKM  RD V++  MI GY + G    +  LF+ M  RE  ++      V   +A  
Sbjct: 85  RFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKM--REEGVVPDKVAMVTVVFACA 142

Query: 232 KSGLQFAWQIFEKMPER-----DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN 286
           K G     +I +   +R     D+I   +M+    KCG ++ A+ +FD+M +++V+SW+ 
Sbjct: 143 KLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSA 202

Query: 287 MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP 346
           MI  Y                             GY  +G   KAL++F  M     L P
Sbjct: 203 MIAAY-----------------------------GY--HGQGRKALDLFRMMLSSGML-P 230

Query: 347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV--ALIDMYSKCGSIENAIK 404
           D  +L  +L A + L ++  G  IH  + K  F L+  H V  AL+DMY KC  IE+A  
Sbjct: 231 DKITLASLLYACSDLKNLQMGRLIHHIVYK--FGLDLDHFVCAALVDMYGKCREIEDARF 288

Query: 405 VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL 464
           +F+++ +  +  W  MI G A  G    +  L  +M    + PD +    ++ ACA  G 
Sbjct: 289 LFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGA 348

Query: 465 VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
           + +     + ++R  K + ++     M+D+  + G +E+AR + + M  E N + W  ++
Sbjct: 349 MHKARTIDDYIQR-KKFQLDVILGTAMIDMHAKCGCVESAREIFDRME-EKNVISWSAMI 406

Query: 525 SA 526
           +A
Sbjct: 407 AA 408


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 200/601 (33%), Positives = 322/601 (53%), Gaps = 51/601 (8%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LL  C +L D+++IHA ++T G  +N  L+TKL+   ++    P  ++AR +F +     
Sbjct: 35  LLNCCSSLPDLSRIHALVVTNGCGQNLLLSTKLI--ITACCLAPTMDYARKMFDQM---- 88

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
            K+D FLWN +I+ Y+     +EAL ++  M   G+  D ++   V+++C+ L  + EG 
Sbjct: 89  PKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGK 148

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           ++H  + K  F SD+F+Q+ L+++Y + G       +F +M +R                
Sbjct: 149 EVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVR---------------- 192

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSM 256
                            N++SW +V+ GY Q    K GL    ++     + + ++  S+
Sbjct: 193 -----------------NIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSV 235

Query: 257 LHGC-----VKCGKMDDAQALFDKMPKRDVVSWAN-MIDGYAKLGRVDIARRLFDEMPKR 310
           L  C     +  GK+     +  K+     VS  N +I  Y K G V+ AR LFD M  +
Sbjct: 236 LPACAGLEFLNLGKLIHGYGI--KLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQ 293

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
           ++V+ NAM+  Y +N     A+++F  MQ E  +  D  ++V V+SA A LG ++ G  +
Sbjct: 294 NLVSWNAMIAAYEQNNAGANAVKLFRRMQAE-KVDFDYITMVSVISACASLGALNTGRWM 352

Query: 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
           H  +++    +N     ALIDMY+KCG+I+ A +VFE++   SV  W +MI   A HG G
Sbjct: 353 HELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHG 412

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
           E A  L   M+   ++P+  TF  +  AC H+GLV+EG   FE M R + + P ++H  C
Sbjct: 413 EDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCAC 472

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           MVD+LGRAG +  A   I+ MP+EP+  +W  LL +CR + NL + E VA+ L  +D   
Sbjct: 473 MVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIHSNLELAELVAEKLFLLDPQT 532

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQV 610
            + YVL+SN++A  G W DA R+R +M+ER LKK+PG S +E+    H F    +S+  +
Sbjct: 533 VTFYVLMSNIYAEAGRWEDAARLRKLMEERELKKIPGHSLVEVNRRFHTFLSGSRSQSSL 592

Query: 611 R 611
           R
Sbjct: 593 R 593


>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Glycine max]
          Length = 696

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 206/654 (31%), Positives = 338/654 (51%), Gaps = 61/654 (9%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
             ++C TL    Q+H++++ T   +   L  +L+A ++          AR +F       
Sbjct: 37  FFQRCFTLQQARQLHSQLVLTTAHRLPFLAARLIAVYAR---FAFLSHARKVFDAI-PLE 92

Query: 80  EKKDPFLWNAIIKT-YSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
                 LWN+II+   SHG   + AL ++  M   G   D F+  LV++ACS LG     
Sbjct: 93  SLHHLLLWNSIIRANVSHGYH-QHALELYVEMRKLGFLPDGFTLPLVIRACSSLGSSYLC 151

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
             +H    ++ F + L + N L+ +Y + G +E ARQLFD M +R  VS+N+M+ GY  +
Sbjct: 152 RIVHCHALQMGFRNHLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYALN 211

Query: 199 GNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDL----- 250
            +   A  +F  M +   + N ++W S+L+ +A  + GL     ++F+ M  R +     
Sbjct: 212 RDSLGASRVFKRMELEGLQPNSVTWTSLLSSHA--RCGLYDETLELFKVMRTRGIEIGAE 269

Query: 251 --------------ISWNSMLHGCVKCG--------------------KMDDAQALFDKM 276
                         + W   +HG V  G                     M DA  +F ++
Sbjct: 270 ALAVVLSVCADMAEVDWGKEIHGYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEI 329

Query: 277 PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD----------VVACNAMMGGYVRNG 326
             +++VSW  +I  YA+ G  D A   F  M K D          V++ +A++ G+   G
Sbjct: 330 KNKNLVSWNALISSYAESGLCDEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKG 389

Query: 327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG 386
              K+LE+F  MQ    +  +  ++  VLS  A+L  ++ G  +H Y  ++  S N   G
Sbjct: 390 RGEKSLELFRQMQLAKVM-ANCVTISSVLSVCAELAALNLGRELHGYAIRNMMSDNILVG 448

Query: 387 VALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE 446
             LI+MY KCG  +    VF+ IE   +  WN++I G  +HGLGE A     EM R  ++
Sbjct: 449 NGLINMYMKCGDFKEGHLVFDNIEGRDLISWNSLIGGYGMHGLGENALRTFNEMIRARMK 508

Query: 447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARN 506
           PD+ITF  +L+AC+HAGLV  G   F+ M    ++EP ++HY CMVD+LGRAG ++ A +
Sbjct: 509 PDNITFVAILSACSHAGLVAAGRNLFDQMVTEFRIEPNVEHYACMVDLLGRAGLLKEATD 568

Query: 507 LIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGM 566
           ++ +MP+EPN+ +W  LL++CR Y+++++ E  A  ++ + S  + S++LLSN++A  G 
Sbjct: 569 IVRNMPIEPNEYVWGALLNSCRMYKDMDIVEETASQILTLKSKITGSFMLLSNIYAANGR 628

Query: 567 WNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           W+D+ RVR   + + LKK+PG SWIE+   V+ F   +     + DIY +L+ +
Sbjct: 629 WDDSARVRVSARTKGLKKIPGQSWIEVRKKVYTFSAGNLVHFGLEDIYVILEEL 682


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 220/692 (31%), Positives = 349/692 (50%), Gaps = 92/692 (13%)

Query: 4   SANYNQPC--NSTQSTLL-----LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASF 56
           SAN  Q C  N  +S  +     L R C  L     +HAR++ +  I+N  ++ KLV  +
Sbjct: 37  SANALQDCWKNGNESKEIDDVHTLFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLY 96

Query: 57  SSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCL-MLDNGV 115
                  L   AR+ F       + +D + WN +I  Y    +  E +  F L ML +G+
Sbjct: 97  CYLGNVAL---ARHTFDHI----QNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGL 149

Query: 116 SVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQ 175
           + D  +   VLKAC     + +G +IH L  K  F  D+++   LI LY R   +  AR 
Sbjct: 150 TPDYRTFPSVLKACRT---VIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARI 206

Query: 176 LFDKMGIRDSVSYNSMIDGYVKSGNIESAREL------FDSMPI---------------- 213
           LFD+M +RD  S+N+MI GY +SGN + A  L       DS+ +                
Sbjct: 207 LFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRG 266

Query: 214 -----------RERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVK 262
                       E  L   N +++ YA+    L+   ++F++M  RDLISWNS++     
Sbjct: 267 VTIHSYSIKHGLESELFVSNKLIDLYAEFGR-LRDCQKVFDRMYVRDLISWNSIIKAYEL 325

Query: 263 CGKMDDAQALFDKMPKRDV-------VSWANMIDG------------------------- 290
             +   A +LF +M    +       +S A+++                           
Sbjct: 326 NEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDIT 385

Query: 291 --------YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
                   YAKLG VD AR +F+ +P  DV++ N ++ GY +NG++ +A+E+++ M+ E 
Sbjct: 386 IGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEG 445

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENA 402
            +  +  + V VL A +Q G + +G+ +H  L K+   L+     +L DMY KCG +E+A
Sbjct: 446 EIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDA 505

Query: 403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
           + +F QI   +   WN +I     HG GE A  L  EM    ++PD ITF  LL+AC+H+
Sbjct: 506 LSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHS 565

Query: 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRT 522
           GLV EG  CFE+M+  + + P L+HYGCMVD+ GRAG +E A   I+ M ++P+  IW  
Sbjct: 566 GLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGA 625

Query: 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
           LLSACR + N+++G+  ++HL  ++  +   +VLLSNM+A  G W     +RS+   + L
Sbjct: 626 LLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGL 685

Query: 583 KKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           +K PG S +E++  V  F+  +++     ++Y
Sbjct: 686 RKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMY 717



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 143/314 (45%), Gaps = 16/314 (5%)

Query: 216 RNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC--VKCGKMDDAQALF 273
           R L S  SV+  ++   + LQ  W+   +  E D +  +++   C  ++  K   A+ + 
Sbjct: 22  RVLQSIGSVIREFSASANALQDCWKNGNESKEIDDV--HTLFRYCTNLQSAKCLHARLVV 79

Query: 274 DKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE 333
            K  +   +S A +++ Y  LG V +AR  FD +  RDV A N M+ GY R G S + + 
Sbjct: 80  SKQIQNVCIS-AKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIR 138

Query: 334 IFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMY 393
            F        L PD  +   VL A   +  ID G  IH    K  F  +     +LI +Y
Sbjct: 139 CFSLFMLSSGLTPDYRTFPSVLKACRTV--ID-GNKIHCLALKFGFMWDVYVAASLIHLY 195

Query: 394 SKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
           S+  ++ NA  +F+++    +  WNAMI+G    G  + A  L   +  +    D +T  
Sbjct: 196 SRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM----DSVTVV 251

Query: 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPM 513
            LL+AC  AG    G+       + H LE EL     ++D+    G +   + + + M +
Sbjct: 252 SLLSACTEAGDFNRGVTIHSYSIK-HGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYV 310

Query: 514 EPNDVI-WRTLLSA 526
              D+I W +++ A
Sbjct: 311 R--DLISWNSIIKA 322


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 197/597 (32%), Positives = 332/597 (55%), Gaps = 17/597 (2%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           QIH  +I   + K+  +   LV  ++   C  L + AR +F +      +++   W ++I
Sbjct: 154 QIHGLIIKMDYAKDLFVQNSLVHFYAE--CGEL-DCARKVFDEM----SERNVVSWTSMI 206

Query: 92  KTYSHGLDPKEALVMFCLML-DNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAF 150
             Y+     K+A+ +F  M+ D  V  +  +   V+ AC++L  +E G +++  +R    
Sbjct: 207 CGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGI 266

Query: 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDS 210
             +  + + L+ +Y++C  ++ A++LFD+ G  +    N+M   YV+ G  + A  + + 
Sbjct: 267 EVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNL 326

Query: 211 M---PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISW----NSMLHGCVKC 263
           M    IR  + IS  S ++  +QL++ L +       +      SW    N+++   +KC
Sbjct: 327 MMDSGIRP-DRISMLSAISSCSQLRNIL-WGKSCHGYVLRNGFESWDNICNALIDMYMKC 384

Query: 264 GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV 323
            + D A  +FD+M  + VV+W +++ GY + G VD A   F+ MP++++V+ N ++   V
Sbjct: 385 HRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALV 444

Query: 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG 383
           +     +A+E+F  MQ +  ++ D  +++ + SA   LG +D    I+ Y+EK++  L+ 
Sbjct: 445 QENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDV 504

Query: 384 KHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
           + G  L+DM+S+CG  E+A+ +F  + +  V  W A I  +A+ G  E A +L  EM   
Sbjct: 505 RLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQ 564

Query: 444 SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503
            ++PD + F G L AC H GLV++G   F  M ++H + PE  HYGCMVD+LGRAG +E 
Sbjct: 565 GLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEE 624

Query: 504 ARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563
           A  LI+DMP EPNDVIW +LL+ACR   N+ +    A+ +  +    + SYVLLSN++A 
Sbjct: 625 ALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPERTGSYVLLSNVYAS 684

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            G WND  +VR  MKE+ L+K PG S I++ G  HEF   D+S  ++R I  MLD +
Sbjct: 685 AGRWNDMAKVRLSMKEKGLRKPPGTSVIQIRGKTHEFTSGDESHPEMRKIEAMLDEL 741



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 140/534 (26%), Positives = 257/534 (48%), Gaps = 70/534 (13%)

Query: 14  TQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFF 73
           T++T   L+ CKT++++   H  +   G   +    TKLVA            FA+ +F 
Sbjct: 31  TKATPSSLKNCKTIDELKMFHLSLTKQGLDDDVSAITKLVARSCELGTRESLSFAKEVFE 90

Query: 74  KYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLG 133
              ++      F++N++I+ Y+     KEA+++F  M+++G+S DK++    L  C++  
Sbjct: 91  NGESY---GTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSR 147

Query: 134 LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMID 193
               G+QIHGL+ K+ +  DLF+QN L+  Y  CG L+ AR++FD+M  R+ VS+ SMI 
Sbjct: 148 DKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMIC 207

Query: 194 GYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISW 253
           GY +    + A +LF  M +R+ ++I  NSV                           + 
Sbjct: 208 GYARREFAKDAVDLFFRM-VRDEDVIP-NSV---------------------------TM 238

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDV----VSWANMIDGYAKLGRVDIARRLFDEMPK 309
             ++  C K   ++  + ++D +    +    +  + ++D Y K   +DIA+RLFDE   
Sbjct: 239 VCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGA 298

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
            ++  CNAM   YVR G + +AL +  N+  +  + PD  S++  +S+ +QL +I  G +
Sbjct: 299 SNLDLCNAMASNYVRQGLTKEALGVL-NLMMDSGIRPDRISMLSAISSCSQLRNILWGKS 357

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ----------------IEDGS 413
            H Y+ ++ F        ALIDMY KC   + A ++F++                IE+G 
Sbjct: 358 CHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGE 417

Query: 414 VD---------------HWNAMINGLAIHGLGELAFDLLMEME-RLSIEPDDITFTGLLN 457
           VD                WN +I+ L    + E A ++   M+ +  +  D +T   + +
Sbjct: 418 VDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIAS 477

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM 511
           AC H G +      +  + + ++++ +++    +VD+  R G  E+A ++   +
Sbjct: 478 ACGHLGALDLAKWIYYYIEK-NRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSL 530


>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 599

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 189/540 (35%), Positives = 295/540 (54%), Gaps = 47/540 (8%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFG-SDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183
           +L+ C     +++G  IH  L+   F   +  L N LI +Y++CG    A ++FD+M +R
Sbjct: 52  LLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLR 111

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQ 240
           +  S+N+M+ G+VKSG +  AR +FDSMP  ER+++SWN+++ GYAQ   L   L F  +
Sbjct: 112 NLYSWNNMVSGFVKSGMLVRARVVFDSMP--ERDVVSWNTMVIGYAQDGNLHEALWFFKE 169

Query: 241 IFEKMPERDLISWNSMLHGCVK-----------------------------------CGK 265
           +     + +  S+  +L  CVK                                   CG+
Sbjct: 170 LRRSGIKFNEFSFAGLLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQ 229

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
           M+ A+  FD+M  +D+  W  +I GYAKLG ++ A +LF EMP+++ V+  A++ GYVR 
Sbjct: 230 MESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQ 289

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
           G    AL++F  M   + + P+  +    L A A +  +  G  IH Y+ +     N   
Sbjct: 290 GSGDLALDLFRKM-IAMRVKPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIV 348

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGS-VDHWNAMINGLAIHGLGELAFDLLMEMERLS 444
             +LIDMYSK GS+E + +VF    D      WN MI+ LA HGLG  A  +L +M +  
Sbjct: 349 TSSLIDMYSKSGSLEASERVFRICYDKQDCVLWNTMISALAQHGLGHKALQMLDDMIKFR 408

Query: 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504
           + P+  T   +LNAC+H+GLV+EG+  FE M   H + P+ +HY C++D+LGRAG  +  
Sbjct: 409 VHPNRTTLVVILNACSHSGLVEEGVRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKEL 468

Query: 505 RNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL 564
            + IE+MP EP+  IW  +L  CR + N  +G+  A+ LI +D  +S+ Y+LLS+++A  
Sbjct: 469 MSKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAAEELIKLDPESSAPYILLSSIYADH 528

Query: 565 GMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQV----RDIYYMLDNM 620
           G W    ++R +MK+R + K    SWIE+E  V  F V D S         +IY++L N+
Sbjct: 529 GKWELVEKLRGIMKKRRVNKEKAVSWIEIENKVKAFTVSDGSHAHAHARKEEIYFILHNL 588



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 204/390 (52%), Gaps = 36/390 (9%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   WN ++  Y+   +  EAL  F  +  +G+  ++FS + +L AC +   ++   Q
Sbjct: 141 ERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIKFNEFSFAGLLTACVKSRQLQLNQQ 200

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
            HG +    F S++ L   +I  Y +CG +E A++ FD+M ++D   + ++I GY K G+
Sbjct: 201 AHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGD 260

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM------PERDLISWN 254
           +E+A +LF  MP  E+N +SW +++ GY +  SG   A  +F KM      PE+   +++
Sbjct: 261 MEAADKLFREMP--EKNPVSWTALIAGYVRQGSG-DLALDLFRKMIAMRVKPEQ--FTFS 315

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKRDV----VSWANMIDGYAKLGRVDIARRLFDE-MPK 309
           S L        +   + +   M + +V    +  +++ID Y+K G ++ + R+F     K
Sbjct: 316 SCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEASERVFRICYDK 375

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           +D V  N M+    ++G   KAL++ D+M  +  +HP+  +LV++L+A +  G +++GV 
Sbjct: 376 QDCVLWNTMISALAQHGLGHKALQMLDDM-IKFRVHPNRTTLVVILNACSHSGLVEEGV- 433

Query: 370 IHRYLEKDQFSLNGKHGVA--------LIDMYSKCGSIENAIKVFEQIEDGSVDH-WNAM 420
             R+ E    S+  +HG+         LID+  + G  +  +   E++      H WNA+
Sbjct: 434 --RWFE----SMTVQHGIVPDQEHYACLIDLLGRAGCFKELMSKIEEMPFEPDKHIWNAI 487

Query: 421 INGLAIHG---LGELAFDLLMEMERLSIEP 447
           +    IHG   LG+ A + L++++  S  P
Sbjct: 488 LGVCRIHGNEELGKKAAEELIKLDPESSAP 517



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 97/432 (22%), Positives = 178/432 (41%), Gaps = 81/432 (18%)

Query: 23  KCKTLNDVNQIHARMITTGFIKNTHLTTKLVASF-------SSSPC-------------T 62
           K + L    Q H +++  GF+ N  L+  ++ ++       S+  C             T
Sbjct: 191 KSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTT 250

Query: 63  PLTEFARY--IFFKYHAFRE--KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVD 118
            ++ +A+   +      FRE  +K+P  W A+I  Y        AL +F  M+   V  +
Sbjct: 251 LISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRVKPE 310

Query: 119 KFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLF- 177
           +F+ S  L A + +  +  G QIHG + +     +  + + LI +Y + G LE + ++F 
Sbjct: 311 QFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEASERVFR 370

Query: 178 ---DKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG 234
              DK   +D V +N+MI    + G    A ++ D M I+                    
Sbjct: 371 ICYDK---QDCVLWNTMISALAQHGLGHKALQMLDDM-IK-------------------- 406

Query: 235 LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR-----DVVSWANMID 289
                  F   P R  +    +L+ C   G +++    F+ M  +     D   +A +ID
Sbjct: 407 -------FRVHPNRTTLV--VILNACSHSGLVEEGVRWFESMTVQHGIVPDQEHYACLID 457

Query: 290 GYAKLGRVDIARRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD 348
              + G         +EMP + D    NA++G    +G      +  + +   + L P+ 
Sbjct: 458 LLGRAGCFKELMSKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAAEEL---IKLDPES 514

Query: 349 ASLVIVLSAI-AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFE 407
           ++  I+LS+I A  G  +    +   ++K +  +N +  V+ I+       IEN +K F 
Sbjct: 515 SAPYILLSSIYADHGKWELVEKLRGIMKKRR--VNKEKAVSWIE-------IENKVKAF- 564

Query: 408 QIEDGSVDHWNA 419
            + DGS  H +A
Sbjct: 565 TVSDGSHAHAHA 576


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 199/588 (33%), Positives = 299/588 (50%), Gaps = 73/588 (12%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LL KC +L    QIHA++  TG   +  +  KL+   + +    +++   Y    +H F 
Sbjct: 8   LLSKCSSLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAIT----ISDALHYALRLFHHF- 62

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFC-LMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
              D F+ N +I++ S    P  +L  F  L     +S D F+ +  LKA +    +  G
Sbjct: 63  PNPDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPG 122

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
           +Q+H    +  F + +F+   LIS+                               Y + 
Sbjct: 123 IQLHSQAFRHGFDAHIFVGTTLISM-------------------------------YAEC 151

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLH 258
           G+  SAR +FD                                  +M E ++++WN++L 
Sbjct: 152 GDSGSARRVFD----------------------------------EMSEPNVVTWNAVLT 177

Query: 259 GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
              +CG ++ AQ +F  MP R++ SW  M+ GYAK G + +ARR+F EMP RD V+ + M
Sbjct: 178 AAFRCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTM 237

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
           + G+  NG   +A   F  +  E  +  ++ SL  VLSA AQ G  + G  +H ++EK  
Sbjct: 238 IVGFAHNGCFDEAFGFFRELLRE-EIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAG 296

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG-SVDHWNAMINGLAIHGLGELAFDLL 437
           F   G    ALID YSKCG++  A  VF+ +    S+  W ++I GLA+HG GE A  L 
Sbjct: 297 FLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLF 356

Query: 438 MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
            EME   + PD ITF  LL AC+H+GLV+EG   F  M+ ++ +EP ++HYGCMVD+ GR
Sbjct: 357 HEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGR 416

Query: 498 AGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557
           A  ++ A   I +MP+ PN +IWRTLL AC  + N+ + E V   L  MD  NS  +VLL
Sbjct: 417 AARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLL 476

Query: 558 SNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDK 605
           SN++A  G W D   +R  M E ++KK PG S IE++ V++ F   +K
Sbjct: 477 SNVYAVAGKWKDVSSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVAGEK 524


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 212/682 (31%), Positives = 343/682 (50%), Gaps = 90/682 (13%)

Query: 14  TQSTLLLLRKCKTLNDVNQIHARMITTGFI---KNTHLTTKLV-------------ASFS 57
           T S+ L   +C        +HAR++T+  +    + HLT +L+               F 
Sbjct: 32  TSSSFLRALRC--------LHARLLTSALLHAPPHPHLTLRLIHLYTLSGDLPAAATLFR 83

Query: 58  SSPC--TPLTEFARY---------IFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVM 106
           + PC     +  A Y         + F     + ++D  L NA+I  Y+       A+ +
Sbjct: 84  ADPCPVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAV 143

Query: 107 FCLMLDNG-VSVDKFSASLVLKACSRLGLI--EEGLQIHGLLRKVAFGSDLFLQNCLISL 163
           F  +L +G +  D +S + +L A   L  I      Q+   + K   G  L + N L++L
Sbjct: 144 FRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVAL 203

Query: 164 YVRCGYLEF---ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLIS 220
           Y++C  LE    AR++ D+M  +D++++ +M+ GYV+ G++ +AR +F+ + ++    + 
Sbjct: 204 YMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFD--VV 261

Query: 221 WNSVLNGYAQLKSGLQF-AWQIFEKMP-ER---DLISWNSMLHGCV-------------- 261
           WN++++GY  + SG+   A+++F +M  ER   D  ++ S+L  C               
Sbjct: 262 WNAMISGY--VHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQ 319

Query: 262 -------------------------KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR 296
                                    KCG +  A+ +FD M  +DVVSW  ++ GY +   
Sbjct: 320 ITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSC 379

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           +D A  +F+EMP ++ ++   M+ GYV  G+S  AL++F+ M+ E  + P D +    +S
Sbjct: 380 LDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAE-DVKPCDYTYAGAIS 438

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
           A  +LG +  G  +H +L +  F  +   G ALI MY++CG+++ A  +F  + +     
Sbjct: 439 ACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVS 498

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           WNAMI+ L  HG G  A +L   M    I PD I+F  +L AC H+GLV EG   FE M+
Sbjct: 499 WNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMK 558

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
           R   + P   HY  ++D+LGRAG I  AR+LI+ MP EP   IW  +LS CR   ++ +G
Sbjct: 559 RDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELG 618

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
              A  L  M   +  +Y+LLSN ++  G W DA RVR +M++R +KK PGCSWIE    
Sbjct: 619 AHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNK 678

Query: 597 VHEFFVRDKSRLQVRDIYYMLD 618
           VH F V D    +   +Y  L+
Sbjct: 679 VHVFVVGDTKHPEAHKVYKFLE 700


>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
 gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
          Length = 427

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 165/407 (40%), Positives = 252/407 (61%), Gaps = 4/407 (0%)

Query: 215 ERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALF 273
           ER+++SWNS++ G   LK G L  A ++F++MP +D +SWN++L G VK G+M+ A  LF
Sbjct: 9   ERDVVSWNSMIRGL--LKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNKAFGLF 66

Query: 274 DKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE 333
           + MP+R+VVSW+ M+ GY K G +++AR LFD MP +++V+   ++ GY   G +  A+ 
Sbjct: 67  ESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIR 126

Query: 334 IFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMY 393
            F+ M+ E  L PDD +++ +L++ A+ G +  G  +H  +E+ ++  +     AL+DMY
Sbjct: 127 SFEQME-EAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMY 185

Query: 394 SKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
           +KCG ++ A+ VF  +    +  WN M+ GLA+HG GE A  L   M +    PD +T  
Sbjct: 186 AKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVTLV 245

Query: 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPM 513
            +L AC HAG V EG+  F  M R + + P ++HYGCMVD+LGR G ++ A  L++ MP+
Sbjct: 246 AVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPV 305

Query: 514 EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV 573
           EPN VIW TLL ACR +  + + E V   L  ++ S+  +Y LLSN+FA  G W+    V
Sbjct: 306 EPNVVIWGTLLGACRMHNAVGLAEEVLDCLFKLEPSDPGNYSLLSNIFASAGDWSSVANV 365

Query: 574 RSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           R  MK   ++K  G S IE++  VHEF V DKS  +   IY M++ +
Sbjct: 366 RLQMKNFGIQKPSGASSIEVDDEVHEFTVFDKSHPKSDKIYQMINRL 412



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 187/363 (51%), Gaps = 52/363 (14%)

Query: 145 LRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESA 204
           L KV    D+   N +I   ++ G L  A +LFD+M ++D+VS+N+++DGYVK+G +  A
Sbjct: 3   LFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNKA 62

Query: 205 RELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCG 264
             LF+SMP  ERN++SW+++++GY +    ++ A  +F++MP ++L+SW  ++ G    G
Sbjct: 63  FGLFESMP--ERNVVSWSTMVSGYCK-AGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKG 119

Query: 265 KMDDAQALFDKMPKRDV--------------------------------------VSWAN 286
              DA   F++M +  +                                      V+ +N
Sbjct: 120 LAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSN 179

Query: 287 -MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLH 345
            ++D YAK G+VD A  +F+ M K+D+V+ N M+ G   +G+  KAL++F  M+ E +  
Sbjct: 180 ALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGF-R 238

Query: 346 PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD-QFSLNGKHGVALIDMYSKCGSIENAIK 404
           PD  +LV VL A    G +D+G+     +E+D     + +H   ++D+  + G ++ A +
Sbjct: 239 PDKVTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYR 298

Query: 405 VFEQIE-DGSVDHWNAMINGLAIH---GLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460
           + + +  + +V  W  ++    +H   GL E   D L ++E      D   ++ L N  A
Sbjct: 299 LVQSMPVEPNVVIWGTLLGACRMHNAVGLAEEVLDCLFKLE----PSDPGNYSLLSNIFA 354

Query: 461 HAG 463
            AG
Sbjct: 355 SAG 357



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 128/300 (42%), Gaps = 45/300 (15%)

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
           E AR +F +       K+   W  I+  Y+     K+A+  F  M + G+  D  +   +
Sbjct: 91  EMARMLFDRMPV----KNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISI 146

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           L +C+  GL+  G ++H  + ++ +   + + N L+ +Y +CG ++ A  +F+ M  +D 
Sbjct: 147 LASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDL 206

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM 245
           VS+N M+ G    G+ E A +LF  M  R+                              
Sbjct: 207 VSWNCMLQGLAMHGHGEKALQLFSIM--RQEGF--------------------------- 237

Query: 246 PERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRD------VVSWANMIDGYAKLGRVDI 299
              D ++  ++L  CV  G +D+    F+ M +RD      +  +  M+D   + GR+  
Sbjct: 238 -RPDKVTLVAVLCACVHAGFVDEGIRYFNNM-ERDYGIVPHIEHYGCMVDLLGRGGRLKE 295

Query: 300 ARRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
           A RL   MP + +VV    ++G    +     A E+ D   C   L P D     +LS I
Sbjct: 296 AYRLVQSMPVEPNVVIWGTLLGACRMHNAVGLAEEVLD---CLFKLEPSDPGNYSLLSNI 352



 Score = 45.4 bits (106), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 17/173 (9%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           KKD   WN +++  +     ++AL +F +M   G   DK +   VL AC   G ++EG++
Sbjct: 203 KKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIR 262

Query: 141 -IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
             + + R       +    C++ L  R G L+ A +L   M +  +V     + G  +  
Sbjct: 263 YFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVEPNVVIWGTLLGACRMH 322

Query: 200 N-IESARELFDSM----PIRERN--LIS--------WNSVLNGYAQLKS-GLQ 236
           N +  A E+ D +    P    N  L+S        W+SV N   Q+K+ G+Q
Sbjct: 323 NAVGLAEEVLDCLFKLEPSDPGNYSLLSNIFASAGDWSSVANVRLQMKNFGIQ 375


>gi|125548358|gb|EAY94180.1| hypothetical protein OsI_15952 [Oryza sativa Indica Group]
          Length = 655

 Score =  328 bits (840), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 177/463 (38%), Positives = 257/463 (55%), Gaps = 8/463 (1%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN 217
           N L+S YV  GY+  A  LF +M  R+ VS+N MI GY ++G++  A+ LFD MP  E++
Sbjct: 193 NALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMP--EKD 250

Query: 218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP 277
           ++S  +++ GY Q    +  AW++F+ MP RD ++WN+M+ G V+  ++DDA  LF +MP
Sbjct: 251 VLSRTAIMRGYLQ-NGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMP 309

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
            RD +SW  ++ GY + G +D A   F   P +D ++ N ++ GY   G    AL +   
Sbjct: 310 DRDQISWHAILQGYVQQGDMDSANVWFPRAPNKDAISWNTLISGYKDEG----ALSLLSE 365

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
           M     L PD A+L +V+S  A L  +  G  +H +  K  F  +     +LI MYSKCG
Sbjct: 366 M-IRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCG 424

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            I  A +VFE I       WNAMI   A HGL + A  +   M +    PD  TF  +L+
Sbjct: 425 LISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILS 484

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
           ACAH G + EG   F  M+    L P   HY CMVD+LGR+G I  A +    +P +   
Sbjct: 485 ACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYDFTRRIPSDHRT 544

Query: 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
             W TL SAC ++  + +GE +A++++    S+   Y LLSN++A   MW+ A  VR  M
Sbjct: 545 TAWETLFSACNSHGEIQLGEIIARNVLKARPSDGGMYTLLSNIYAAKEMWSSAASVRGFM 604

Query: 578 KERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           KER LKK  GCSWIEL+G V  F   D +   +  I   +D++
Sbjct: 605 KERGLKKETGCSWIELKGEVVTFSSNDSNHPLIEQICQEVDSI 647



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 138/496 (27%), Positives = 242/496 (48%), Gaps = 52/496 (10%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           D+F  N  I+ + R G +  AR++FD+M  R+  ++N M+ G +++  +  AR++FD+MP
Sbjct: 33  DVFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMP 92

Query: 213 IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
           +  RN +SW ++L GYA+     + A ++F ++P+R+++SWN+M+ G  + G +  A+ L
Sbjct: 93  V--RNSVSWAALLTGYARCGRVAE-ARELFNRIPDRNVVSWNAMVSGYARNGMVKRAREL 149

Query: 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
           FD MP RD VSW  MI GY K   V  AR LFD MP      CNA++ GYV  GY   A 
Sbjct: 150 FDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAE 209

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY---LEKDQFSLNGKHGVAL 389
            +F  MQ       +  S  ++++  A+ G +  G+A   +    EKD  S       A+
Sbjct: 210 VLFGQMQTR-----NPVSWNVMITGYARAGSM--GIAQRLFDEMPEKDVLSR-----TAI 257

Query: 390 IDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD 449
           +  Y + GS++ A KVF+ +       WN M++G   +   + A  L  EM     + D 
Sbjct: 258 MRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMP----DRDQ 313

Query: 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE 509
           I++  +L      G +    + F          P          I G     E A +L+ 
Sbjct: 314 ISWHAILQGYVQQGDMDSANVWF-------PRAPNKDAISWNTLISGYKD--EGALSLLS 364

Query: 510 DM---PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS---NMFAG 563
           +M    ++P+      ++S C +  +L  G+ V  HL  + +      +++S   +M++ 
Sbjct: 365 EMIRGGLKPDQATLSVVISICASLVSLGCGKMV--HLWAIKTGFEHDALVMSSLISMYSK 422

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTP 623
            G+ ++A +V  ++ +R+       +W  +        + D++ L+V D+  M    + P
Sbjct: 423 CGLISEASQVFELILQRDT-----VTWNAMIATYAYHGLADEA-LKVFDM--MTKAGFRP 474

Query: 624 D-----SVATSCTHYG 634
           D     S+ ++C H G
Sbjct: 475 DHATFLSILSACAHKG 490



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 4/130 (3%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           KD   WN +I  Y      + AL +   M+  G+  D+ + S+V+  C+ L  +  G  +
Sbjct: 342 KDAISWNTLISGYKD----EGALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMV 397

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H    K  F  D  + + LIS+Y +CG +  A Q+F+ +  RD+V++N+MI  Y   G  
Sbjct: 398 HLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLA 457

Query: 202 ESARELFDSM 211
           + A ++FD M
Sbjct: 458 DEALKVFDMM 467



 Score = 45.4 bits (106), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 86/174 (49%), Gaps = 22/174 (12%)

Query: 15  QSTL-LLLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY 70
           Q+TL +++  C +L  +     +H   I TGF  +  + + L++ +S   C  ++E A  
Sbjct: 375 QATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSK--CGLISE-ASQ 431

Query: 71  IFFKYHAFREKKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKAC 129
           +F        ++D   WNA+I TY+ HGL   EAL +F +M   G   D  +   +L AC
Sbjct: 432 VF----ELILQRDTVTWNAMIATYAYHGL-ADEALKVFDMMTKAGFRPDHATFLSILSAC 486

Query: 130 SRLGLIEEGLQIHGLLRK---VAFGSDLFLQNCLISLYVRCGYL----EFARQL 176
           +  G + EG      +++   +   SD +  +C++ L  R G++    +F R++
Sbjct: 487 AHKGYLYEGCYHFRSMQEDWNLVPRSDHY--SCMVDLLGRSGFIHQAYDFTRRI 538


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  328 bits (840), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 195/640 (30%), Positives = 336/640 (52%), Gaps = 53/640 (8%)

Query: 26  TLNDVNQIHARMITTGFIKNTHLTTKLVASFSS--SPCTPLTEFARYIFFKYHAFREKKD 83
           ++    ++HA + T+G + +      L+ S +S  SP  PL    RY    +   R    
Sbjct: 11  SVRQATELHALVTTSGRLLHPPSAAHLLNSLTSCISPSDPL--HLRYALSLFD--RMPCS 66

Query: 84  PFLWNAIIKT-YSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL-IEEGLQI 141
            FL++  ++  +     P   ++++  M    V  D F+   + K C+R G  +  G  +
Sbjct: 67  TFLFDTALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFKCCARGGAHVLLGRML 126

Query: 142 HGLLRKVAFGSDL-FLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           H    +    S +  + + +I +Y   G    AR+ FD+  ++D V++ ++I G  K G 
Sbjct: 127 HAACFRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGL 186

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE----RDLISWNSM 256
           ++ AR L    P+R  N+++W  +++GY++     + A   F  M       D ++   M
Sbjct: 187 LDDARRLLARAPVR--NVVTWTGLISGYSRAGRAAE-AVDCFNSMLSDGIAPDEVTVIGM 243

Query: 257 LHGC-----------------------------------VKCGKMDDAQALFDKMPK-RD 280
           L  C                                    KCG    A+ +FD + + R 
Sbjct: 244 LSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRG 303

Query: 281 VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQC 340
              W  MIDGY K+G VDIAR LFD+M   DV+  N+++ GY+  G   +AL +F  M+ 
Sbjct: 304 PQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMR- 362

Query: 341 ELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE 400
              L  D+ ++V +L+A A LG + +G A+H  +E+     +   G AL+DMY KCG +E
Sbjct: 363 RHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRLVERDVYLGTALLDMYMKCGRVE 422

Query: 401 NAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460
            A+  F+Q+    V  W+AMI GLA +G+G+ A +    M+      + +T+  +L AC+
Sbjct: 423 EAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLTACS 482

Query: 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIW 520
           H+ L+ EG L F+ MR +H + P+++HYGCM+D+LGR+G ++ A +L++ MPM+PN VIW
Sbjct: 483 HSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQTMPMQPNAVIW 542

Query: 521 RTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580
            ++LSACR ++N+++ +  A HL+ ++ +  + YV + N++     W DA ++R +M++R
Sbjct: 543 ASILSACRVHKNVDLAQNAAHHLLKLEPAEDAVYVQMYNIYIDSRQWEDASKIRRLMEKR 602

Query: 581 NLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            +KK  G S I + G VH+F V D+S  Q+ +I  M++ +
Sbjct: 603 GVKKTAGYSSIAVAGQVHKFIVGDRSHPQIAEIVVMMEEI 642


>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
 gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
          Length = 623

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 184/542 (33%), Positives = 296/542 (54%), Gaps = 37/542 (6%)

Query: 110 MLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY 169
           + D     D  S + ++ A +R G++ +  +   L  +     ++     L+S Y R   
Sbjct: 64  LFDGTPDWDVVSWTALVSAYARRGMLRDARE---LFDRPDARRNVVTWTALLSGYARARL 120

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA 229
           ++ A  LF +M  R+ VS+N+M++ Y  +G +  A  LFD MP+R+    SWN +L    
Sbjct: 121 VDEAEALFQRMPQRNVVSWNTMLEAYAAAGRVGDACALFDRMPVRDAG--SWNILLATLV 178

Query: 230 QLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMID 289
           +  S +  A ++F +MPERD+++W +M+ G  + GK+D+A+ LFD MP+R+VVSW  MI 
Sbjct: 179 RSGS-VDKARELFGRMPERDVMAWTTMVDGVARSGKVDEARVLFDSMPERNVVSWNAMIS 237

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM----------- 338
           GY +  R+D A  LF +MP+RD+ +CN M+ G+++N    +A E+FD M           
Sbjct: 238 GYTRNHRIDEALDLFMKMPERDIASCNIMVTGFIQNKDLKRARELFDEMPERNVVTWTTM 297

Query: 339 --------QCELYL-----------HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF 379
                   Q EL L            P+  + +  L A + L  + +G  +H+ + K  F
Sbjct: 298 MNGYLKGKQSELALGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTF 357

Query: 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLME 439
             +     AL+++Y+KCG I  A K+F+   +  +  WN +I   A HG+G  A  L  +
Sbjct: 358 QFDAFVESALMNVYAKCGEIGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAILLYEK 417

Query: 440 MERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG 499
           M+     P+D+T+  LL+AC+H+GLV EGL  FE M     +    +HY C++D+  RAG
Sbjct: 418 MQENGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAG 477

Query: 500 HIEAARNLIEDMPMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
            ++ A+ LI  + ++P +  +W  LL  C  + N ++G   A++L+  +  N+ +Y LLS
Sbjct: 478 RLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLLQAEPDNAGTYTLLS 537

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           N++A  G W +A  +RS M  R LKK PGCSWIE+   VH F  RDKS  +   IY +L 
Sbjct: 538 NIYASAGKWKEAAEIRSEMNNRGLKKQPGCSWIEVANKVHVFVARDKSHSESDLIYGLLQ 597

Query: 619 NM 620
           N+
Sbjct: 598 NI 599



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 173/424 (40%), Gaps = 71/424 (16%)

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFD-------- 305
           N ++      G++ DA+ LFD  P  DVVSW  ++  YA+ G +  AR LFD        
Sbjct: 46  NRLIAELAAAGRVWDARKLFDGTPDWDVVSWTALVSAYARRGMLRDARELFDRPDARRNV 105

Query: 306 ------------------------EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
                                    MP+R+VV+ N M+  Y   G    A  +FD M   
Sbjct: 106 VTWTALLSGYARARLVDEAEALFQRMPQRNVVSWNTMLEAYAAAGRVGDACALFDRMPVR 165

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIH-RYLEKDQFSLNGKHGVALIDMYSKCGSIE 400
                D  S  I+L+ + + G +DK   +  R  E+D  +        ++D  ++ G ++
Sbjct: 166 -----DAGSWNILLATLVRSGSVDKARELFGRMPERDVMAW-----TTMVDGVARSGKVD 215

Query: 401 NAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460
            A  +F+ + + +V  WNAMI+G   +   + A DL M+M    I   +I  TG +    
Sbjct: 216 EARVLFDSMPERNVVSWNAMISGYTRNHRIDEALDLFMKMPERDIASCNIMVTGFI---- 271

Query: 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPM---EPND 517
               +K     F+ M      E  +  +  M++   +    E A  L   M M    PN 
Sbjct: 272 QNKDLKRARELFDEMP-----ERNVVTWTTMMNGYLKGKQSELALGLFSGMLMAGTRPNQ 326

Query: 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV--LLSNMFAGLGMWNDARRVRS 575
           V +   L AC +   L  G+ V   +I   +    ++V   L N++A  G    AR++  
Sbjct: 327 VTFLGALDACSDLAALCEGKQV-HQMICKTTFQFDAFVESALMNVYAKCGEIGLARKLFD 385

Query: 576 MMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVA-----TSC 630
           + +E++L        I   G++  +         +     M +N + P+ V      ++C
Sbjct: 386 LSREKDL--------ISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVTYVVLLSAC 437

Query: 631 THYG 634
           +H G
Sbjct: 438 SHSG 441



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 158/368 (42%), Gaps = 66/368 (17%)

Query: 37  MITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSH 96
           ++ TGFI+N  L                 + AR +F +      +++   W  ++  Y  
Sbjct: 265 IMVTGFIQNKDL-----------------KRARELFDEM----PERNVVTWTTMMNGYLK 303

Query: 97  GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFL 156
           G   + AL +F  ML  G   ++ +    L ACS L  + EG Q+H ++ K  F  D F+
Sbjct: 304 GKQSELALGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQFDAFV 363

Query: 157 QNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRER 216
           ++ L+++Y +CG +  AR+LFD    +D +S+N +I  Y   G    A  L++ M     
Sbjct: 364 ESALMNVYAKCGEIGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQ---- 419

Query: 217 NLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM 276
                    NGY                    + +++  +L  C   G +D+   +F+ M
Sbjct: 420 --------ENGY------------------RPNDVTYVVLLSACSHSGLVDEGLKIFESM 453

Query: 277 PKRDVVS-----WANMIDGYAKLGRVDIARRLFDEMPKRDVVAC--NAMMGGYVRNG-YS 328
                ++     +  +ID  ++ GR+D A+RL   +  +       +A++GG   +G  S
Sbjct: 454 VNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNES 513

Query: 329 MKALEIFDNMQCELYLHPDDASLVIVLSAI-AQLGHIDKGVAIHRYLEKDQFSLNGKHGV 387
           +  L   + +Q E    PD+A    +LS I A  G   +   I    E +   L  + G 
Sbjct: 514 IGNLAARNLLQAE----PDNAGTYTLLSNIYASAGKWKEAAEIRS--EMNNRGLKKQPGC 567

Query: 388 ALIDMYSK 395
           + I++ +K
Sbjct: 568 SWIEVANK 575


>gi|195651797|gb|ACG45366.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 544

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 182/524 (34%), Positives = 298/524 (56%), Gaps = 24/524 (4%)

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL--Q 140
           DP  W  ++K Y+     +EA +++   L            ++LKA +     E GL   
Sbjct: 19  DPDKWAHLVKEYASQSLLREAALVYARNLPRRTHHQPL-LPVLLKAAAASSPTELGLGKS 77

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H    K AF  DL +   ++S+Y +CG L  AR+ FD+M  R+ +SYN+++ GY  +G+
Sbjct: 78  LHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAVAGD 137

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE--RDLISWNSMLH 258
           ++ A  LF  M  R    ++W +++ G+A+ K  +  A + FE  P   R +++W  ++ 
Sbjct: 138 MDGALALFGGM--RSWTHVTWATLIRGFAE-KGDMAEARRWFEATPPGMRTVVTWTVLVQ 194

Query: 259 GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
           G V  G M+ A+ +FD+MP R+   W++M+ GY K G  + AR +FD +P R++V  NA+
Sbjct: 195 GYVCAGDMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNAL 254

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH-----RY 373
           + GY + G S +ALE F  M  E  + PD+ ++  +LSA AQLG +++G  +H      +
Sbjct: 255 IAGYAQIGCSEQALEAFHLMLQE-RVKPDEFTMASLLSACAQLGSLEQGKKVHDFINQEH 313

Query: 374 LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
           + K+ F +NG     LIDMY+KCG + +A  +F+ +   + + WN MI+ LA HG  + A
Sbjct: 314 IRKNHFVMNG-----LIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALASHGQSDEA 368

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493
             L  +MER   +P+ IT   +L AC H G V EGL  F  +   + +   ++HYGC+VD
Sbjct: 369 LHLFFQMERSGRKPNTITVLAVLGACTHGGFVDEGLQIFNKL-DAYGVGAGVEHYGCLVD 427

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD----SS 549
           +LGRAG ++ A  ++ +M  EPN+VIW +LL ACR + +  +   V + ++ +     SS
Sbjct: 428 LLGRAGKLKEAYEIVNNMSEEPNEVIWGSLLGACRVHRDAEMSRLVTEEILRLHSFHASS 487

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
           N + Y++L+N+ A    W  A ++R  M  R ++K PGCS +EL
Sbjct: 488 NDAEYIMLANIMAASERWEQAEQMRRKMARRGVEKTPGCSSLEL 531


>gi|115479089|ref|NP_001063138.1| Os09g0407800 [Oryza sativa Japonica Group]
 gi|51091508|dbj|BAD36246.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|51091564|dbj|BAD36301.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113631371|dbj|BAF25052.1| Os09g0407800 [Oryza sativa Japonica Group]
 gi|215740507|dbj|BAG97163.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 612

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 175/442 (39%), Positives = 282/442 (63%), Gaps = 5/442 (1%)

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
           SDL + N L+SLY+  G    AR+L   +   D+V++N+++   ++ G + +AR LFD M
Sbjct: 124 SDLRIANSLLSLYLSLGSPASARRLLADIPRPDAVTWNTLLRACLRLGLLPAARRLFDEM 183

Query: 212 PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQA 271
           P  ER+++S+NS++ GY   +  L  A  +F+ M  RD+++WNSM+ G  + G M++A+ 
Sbjct: 184 P--ERDVVSYNSMVAGYVA-EGDLAGARNLFDGMARRDVVTWNSMISGYSRHGDMENARK 240

Query: 272 LFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKA 331
           +FD MP+RDVVSW +M+DGYA+ G V++AR +FD MPKR +V+ N ++  Y +     + 
Sbjct: 241 MFDAMPERDVVSWNSMLDGYAQAGDVEMARLVFDGMPKRSIVSWNVILALYAKLRDWREC 300

Query: 332 LEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK--DQFSLNGKHGVAL 389
           L +FD M  E    P++ + V VL+A A LG ++KG  +H  +++  D+   +      L
Sbjct: 301 LGLFDVMIAEGNTVPNEKTFVSVLTACANLGDLEKGRWVHDLVQERWDRLVPDVLLLTTL 360

Query: 390 IDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD 449
           + MY+KCG +E A ++F  + + SV  WN+MI G  +HG  E A +L +EMER    P++
Sbjct: 361 LTMYAKCGVMETAREIFNSMGEKSVPSWNSMIIGYGLHGQSEKALELFLEMERDGPRPNE 420

Query: 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE 509
            TF  +L++CAH GLV EG  CF+ M R + +EP+ +H+GCM+D+LGRAG +E + NLIE
Sbjct: 421 TTFICVLSSCAHGGLVLEGWWCFDRMVRFYSIEPKSEHFGCMMDLLGRAGLLEQSENLIE 480

Query: 510 DMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWND 569
           ++  + ++ +W  L+SA +   N+ +GE V K LI M  +    Y+LLSN++A  G W+D
Sbjct: 481 NLQGKVSEALWGILMSASQTQNNIKLGEFVGKKLIEMRPTEVGPYILLSNIYAAEGRWDD 540

Query: 570 ARRVRSMMKERNLKKLPGCSWI 591
             +VR +M+E+ ++K  G S +
Sbjct: 541 VEKVRKVMEEKGVEKDAGLSLV 562



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 188/378 (49%), Gaps = 57/378 (15%)

Query: 118 DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLF 177
           D  + + +L+AC RLGL+    ++   + +     D+   N +++ YV  G L  AR LF
Sbjct: 156 DAVTWNTLLRACLRLGLLPAARRLFDEMPE----RDVVSYNSMVAGYVAEGDLAGARNLF 211

Query: 178 DKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF 237
           D M  RD V++NSMI GY + G++E+AR++FD+MP  ER+++SWNS+L+GYAQ    ++ 
Sbjct: 212 DGMARRDVVTWNSMISGYSRHGDMENARKMFDAMP--ERDVVSWNSMLDGYAQ-AGDVEM 268

Query: 238 AWQIFEKMPERDLISWN------------------------------------SMLHGCV 261
           A  +F+ MP+R ++SWN                                    S+L  C 
Sbjct: 269 ARLVFDGMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACA 328

Query: 262 KCGKMDDAQALFDKMPKR------DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
             G ++  + + D + +R      DV+    ++  YAK G ++ AR +F+ M ++ V + 
Sbjct: 329 NLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFNSMGEKSVPSW 388

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG-VAIHRYL 374
           N+M+ GY  +G S KALE+F  M+ +    P++ + + VLS+ A  G + +G     R +
Sbjct: 389 NSMIIGYGLHGQSEKALELFLEMERD-GPRPNETTFICVLSSCAHGGLVLEGWWCFDRMV 447

Query: 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH--WNAMINGLAIHG---L 429
                    +H   ++D+  + G +E +  + E ++ G V    W  +++         L
Sbjct: 448 RFYSIEPKSEHFGCMMDLLGRAGLLEQSENLIENLQ-GKVSEALWGILMSASQTQNNIKL 506

Query: 430 GELAFDLLMEMERLSIEP 447
           GE     L+EM    + P
Sbjct: 507 GEFVGKKLIEMRPTEVGP 524



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 80/150 (53%), Gaps = 7/150 (4%)

Query: 65  TEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL 124
            E AR +F        K+    WN I+  Y+   D +E L +F +M+  G +V      +
Sbjct: 266 VEMARLVFDGM----PKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFV 321

Query: 125 -VLKACSRLGLIEEGLQIHGLLRKV--AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
            VL AC+ LG +E+G  +H L+++       D+ L   L+++Y +CG +E AR++F+ MG
Sbjct: 322 SVLTACANLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFNSMG 381

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSM 211
            +   S+NSMI GY   G  E A ELF  M
Sbjct: 382 EKSVPSWNSMIIGYGLHGQSEKALELFLEM 411


>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 542

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 192/500 (38%), Positives = 287/500 (57%), Gaps = 17/500 (3%)

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLF-----LQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +R   + E  QIH  L K    SD       L  C  S   R     +A  +F ++  ++
Sbjct: 33  TRCSTMRELKQIHANLIKTGLISDTVAASRVLAFCCASPSDR----NYAYLVFTRINHKN 88

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSM----PIRERNLISWNSVLNGYAQL---KSGLQF 237
              +N++I G+ +S   E A  +F  M    P  +   +++ SV   YA L   + G Q 
Sbjct: 89  PFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYASLGLARDGRQL 148

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
             ++ ++  E D    N+MLH  V CG + +A  LF  M   DVV+W ++I G AK G +
Sbjct: 149 HGRVIKEGLEDDSFIRNTMLHMYVTCGCLVEAWRLFVGMMGFDVVAWNSIIMGLAKCGLI 208

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
           D A++LFDEMP+R+ V+ N+M+ G+VRNG    ALE+F  MQ E  + PD  ++V +L+A
Sbjct: 209 DQAQKLFDEMPQRNGVSWNSMISGFVRNGRFKDALEMFREMQ-ERDVKPDGFTMVSLLNA 267

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
            A LG  ++G  IH+Y+ +++F LN     ALIDMY KCG  E  +KVFE      +  W
Sbjct: 268 CAYLGASEQGRWIHKYIVRNRFELNSIVITALIDMYCKCGCFEEGLKVFECAPTKQLSCW 327

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
           N+MI GLA +G  E A DL +E+ER  +EPD ++F G+L ACAH+G V +    F LMR 
Sbjct: 328 NSMILGLANNGCEERAMDLFLELERTGLEPDSVSFIGVLTACAHSGEVHKAGEFFRLMRE 387

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
            + +EP ++HY CMV++LG AG ++ A  LI+ MP+E + +IW +LL+ACR   N+ + +
Sbjct: 388 KYMIEPSIKHYTCMVNVLGGAGLLDEAEALIKKMPVEGDTIIWSSLLAACRKNGNVEMAK 447

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVV 597
             A  L  +D   +  YVL+SN +A  G++ +A   R +MKER ++K  GCS IE++  V
Sbjct: 448 RAANCLKNLDPDETCGYVLMSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEV 507

Query: 598 HEFFVRDKSRLQVRDIYYML 617
           HEF    K   +  +IY +L
Sbjct: 508 HEFVSCGKKHPKSTEIYSLL 527



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 138/485 (28%), Positives = 251/485 (51%), Gaps = 29/485 (5%)

Query: 19  LLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAF 78
           L+  +C T+ ++ QIHA +I TG I +T   ++++A   +SP      +A  +F + +  
Sbjct: 30  LIDTRCSTMRELKQIHANLIKTGLISDTVAASRVLAFCCASPSD--RNYAYLVFTRIN-- 85

Query: 79  REKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV--DKFSASLVLKACSRLGLIE 136
              K+PF+WN II+ +S    P+ A+ +F  ML +  SV   + +   V KA + LGL  
Sbjct: 86  --HKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYASLGLAR 143

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           +G Q+HG + K     D F++N ++ +YV CG L  A +LF  M   D V++NS+I G  
Sbjct: 144 DGRQLHGRVIKEGLEDDSFIRNTMLHMYVTCGCLVEAWRLFVGMMGFDVVAWNSIIMGLA 203

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----IS 252
           K G I+ A++LFD MP  +RN +SWNS+++G+ +     + A ++F +M ERD+     +
Sbjct: 204 KCGLIDQAQKLFDEMP--QRNGVSWNSMISGFVR-NGRFKDALEMFREMQERDVKPDGFT 260

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMP 308
             S+L+ C   G  +  + +   + +     + +    +ID Y K G  +   ++F+  P
Sbjct: 261 MVSLLNACAYLGASEQGRWIHKYIVRNRFELNSIVITALIDMYCKCGCFEEGLKVFECAP 320

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            + +   N+M+ G   NG   +A+++F  ++    L PD  S + VL+A A  G + K  
Sbjct: 321 TKQLSCWNSMILGLANNGCEERAMDLFLELE-RTGLEPDSVSFIGVLTACAHSGEVHKAG 379

Query: 369 AIHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAI 426
              R + EK     + KH   ++++    G ++ A  + +++  +G    W++++     
Sbjct: 380 EFFRLMREKYMIEPSIKHYTCMVNVLGGAGLLDEAEALIKKMPVEGDTIIWSSLLAACRK 439

Query: 427 HGLGELAFDLLMEMERLSIEPDDIT-FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL 485
           +G  E+A      ++ L  +PD+   +  + NA A  GL +E +    LM+   ++E E+
Sbjct: 440 NGNVEMAKRAANCLKNL--DPDETCGYVLMSNAYASYGLFEEAVEQRLLMKE-RQMEKEV 496

Query: 486 QHYGC 490
              GC
Sbjct: 497 ---GC 498


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 203/632 (32%), Positives = 332/632 (52%), Gaps = 23/632 (3%)

Query: 6   NYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVA--SFSSSPCTP 63
           N N+    T   L LL  C +   + Q+HA +  TG   +    ++L+A  + S+ P   
Sbjct: 27  NTNRNLVVTHPLLSLLESCASFRRLLQLHALLTVTGLAAHRFPASRLLAFCALSTPP--- 83

Query: 64  LTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSAS 123
                 +            + ++   +++ +     P  AL +F  ++ + +  D  +  
Sbjct: 84  ---RLAHAAAILARASPGPNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFV 140

Query: 124 LVLKACSRL------GLIEEGLQIHGLLRKVAF-GSDLFLQNCLISLYVRCGYLEFARQL 176
             +KA +        G    G  IH    K  F G  + + N L+  Y     L+ A ++
Sbjct: 141 FAVKAAAAAAESEHGGTPSGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKV 200

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPI------RERNLISWNSVLNGYAQ 230
           FD+M  RD VS+ +++DGY ++G  + A  LF  M +          L++  S +     
Sbjct: 201 FDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGL 260

Query: 231 LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDG 290
           L  G+     + E    R +   N+++    KCG +  A+ +FD M  +DV SW +M++ 
Sbjct: 261 LAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNA 320

Query: 291 YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
           YAK G ++ A +LF +MP+R+VV+ + M+  Y +     +A+ +F  M     + P DA+
Sbjct: 321 YAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREM-IAAGVDPIDAT 379

Query: 351 LVIVLSAIAQLGHIDKGVAIHR-YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           LV VLSA AQLG +D G  I+  Y+  ++  L    G ALIDM++KCG +  A K+F+++
Sbjct: 380 LVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEM 439

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
            + +V  WN MI   A+HG  E A  L  +++  +I PD ITF GLL +C+H+GLV EG 
Sbjct: 440 AERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGR 499

Query: 470 LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRN 529
             F+ M   +++EP ++HY CM+D+LG+ G +E A  +   MPME ++  W  LL+ACR 
Sbjct: 500 RYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRM 559

Query: 530 YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCS 589
           + N+ +G  VA  L+ +D S+S  YVL+S ++A    W+  + +R  M++R +KK PGCS
Sbjct: 560 HGNVEIGACVADKLVELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKNPGCS 619

Query: 590 WIELEGVVHEFFVRDKSRLQVRDIYYMLDNMW 621
            IE+EG  H+F V D S     +IY  L N++
Sbjct: 620 SIEVEGKFHDFLVADVSHACSEEIYSALKNIY 651


>gi|125605648|gb|EAZ44684.1| hypothetical protein OsJ_29310 [Oryza sativa Japonica Group]
          Length = 612

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 175/442 (39%), Positives = 282/442 (63%), Gaps = 5/442 (1%)

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
           SDL + N L+SLY+  G    AR+L   +   D+V++N+++   ++ G + +AR LFD M
Sbjct: 124 SDLRIANSLLSLYLSLGSPASARRLLADIPRPDAVTWNTLLRACLRLGLLPAARRLFDEM 183

Query: 212 PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQA 271
           P  ER+++S+NS++ GY   +  L  A  +F+ M  RD+++WNSM+ G  + G M++A+ 
Sbjct: 184 P--ERDVVSYNSMVAGYVA-EGDLAGARNLFDGMARRDVVTWNSMISGYSRHGDMENARK 240

Query: 272 LFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKA 331
           +FD MP+RDVVSW +M+DGYA+ G V++AR +FD MPKR +V+ N ++  Y +     + 
Sbjct: 241 MFDAMPERDVVSWNSMLDGYAQAGDVEMARLVFDGMPKRSIVSWNVILALYAKLRDWREC 300

Query: 332 LEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK--DQFSLNGKHGVAL 389
           L +FD M  E    P++ + V VL+A A LG ++KG  +H  +++  D+   +      L
Sbjct: 301 LGLFDVMIAEGNTVPNEKTFVSVLTACANLGDLEKGRWVHDLVQERWDRLVPDVLLLTTL 360

Query: 390 IDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD 449
           + MY+KCG +E A ++F  + + SV  WN+MI G  +HG  E A +L +EMER    P++
Sbjct: 361 LTMYAKCGVMETAREIFNSMGEKSVPSWNSMIIGYGLHGQSEKALELFLEMERDGPRPNE 420

Query: 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE 509
            TF  +L++CAH GLV EG  CF+ M R + +EP+ +H+GCM+D+LGRAG +E + NLIE
Sbjct: 421 TTFICVLSSCAHGGLVLEGWWCFDRMVRFYSIEPKSEHFGCMMDLLGRAGLLEQSENLIE 480

Query: 510 DMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWND 569
           ++  + ++ +W  L+SA +   N+ +GE V K LI M  +    Y+LLSN++A  G W+D
Sbjct: 481 NLQGKVSEALWGILMSASQTQNNIKLGEFVGKKLIEMRPTEVGPYILLSNIYAAEGRWDD 540

Query: 570 ARRVRSMMKERNLKKLPGCSWI 591
             +VR +M+E+ ++K  G S +
Sbjct: 541 VEKVRKVMEEKGVEKDAGLSLV 562



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 188/378 (49%), Gaps = 57/378 (15%)

Query: 118 DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLF 177
           D  + + +L+AC RLGL+    ++   + +     D+   N +++ YV  G L  AR LF
Sbjct: 156 DAVTWNTLLRACLRLGLLPAARRLFDEMPE----RDVVSYNSMVAGYVAEGDLAGARNLF 211

Query: 178 DKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF 237
           D M  RD V++NSMI GY + G++E+AR++FD+MP  ER+++SWNS+L+GYAQ    ++ 
Sbjct: 212 DGMARRDVVTWNSMISGYSRHGDMENARKMFDAMP--ERDVVSWNSMLDGYAQ-AGDVEM 268

Query: 238 AWQIFEKMPERDLISWN------------------------------------SMLHGCV 261
           A  +F+ MP+R ++SWN                                    S+L  C 
Sbjct: 269 ARLVFDGMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACA 328

Query: 262 KCGKMDDAQALFDKMPKR------DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
             G ++  + + D + +R      DV+    ++  YAK G ++ AR +F+ M ++ V + 
Sbjct: 329 NLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFNSMGEKSVPSW 388

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG-VAIHRYL 374
           N+M+ GY  +G S KALE+F  M+ +    P++ + + VLS+ A  G + +G     R +
Sbjct: 389 NSMIIGYGLHGQSEKALELFLEMERD-GPRPNETTFICVLSSCAHGGLVLEGWWCFDRMV 447

Query: 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH--WNAMINGLAIHG---L 429
                    +H   ++D+  + G +E +  + E ++ G V    W  +++         L
Sbjct: 448 RFYSIEPKSEHFGCMMDLLGRAGLLEQSENLIENLQ-GKVSEALWGILMSASQTQNNIKL 506

Query: 430 GELAFDLLMEMERLSIEP 447
           GE     L+EM    + P
Sbjct: 507 GEFVGKKLIEMRPTEVGP 524



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 80/150 (53%), Gaps = 7/150 (4%)

Query: 65  TEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL 124
            E AR +F        K+    WN I+  Y+   D +E L +F +M+  G +V      +
Sbjct: 266 VEMARLVFDGM----PKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFV 321

Query: 125 -VLKACSRLGLIEEGLQIHGLLRKV--AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
            VL AC+ LG +E+G  +H L+++       D+ L   L+++Y +CG +E AR++F+ MG
Sbjct: 322 SVLTACANLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFNSMG 381

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSM 211
            +   S+NSMI GY   G  E A ELF  M
Sbjct: 382 EKSVPSWNSMIIGYGLHGQSEKALELFLEM 411


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 191/609 (31%), Positives = 333/609 (54%), Gaps = 23/609 (3%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           Q+H  ++  G +K+  +   L+  +++  C  + +  R +F +      +++   W ++I
Sbjct: 143 QVHGVVVKMGLVKDLFVANSLIHFYAA--CGKV-DLGRKVFDEML----ERNVVSWTSLI 195

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
             YS     KEA+ +F  M++ GV  +  +    + AC++L  +E G ++  L+ ++   
Sbjct: 196 NGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVK 255

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
           S+  + N L+ +Y++CG +   R++FD+   ++ V YN+++  YV+ G       + D M
Sbjct: 256 SNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEM 315

Query: 212 PIRER--NLISWNSVLNGYAQL---KSGLQFAWQIFEKMPER-DLISWNSMLHGCVKCGK 265
             + +  + ++  S +   AQL     G      +F    ER D IS N+++   +KCGK
Sbjct: 316 LQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNIS-NAIIDMYMKCGK 374

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
            + A  +FD M  + VV+W ++I G  + G +++A R+F EMP+ ++V+ N M+G  V+ 
Sbjct: 375 REAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQA 434

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
               +A+++   MQ +  +  D  ++V + SA   LG +D    I+ Y+EK+   ++ + 
Sbjct: 435 SMFEEAIDLLREMQNQ-GIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQL 493

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
           G AL+DM+S+CG   NA++VFE +E   V  W A I   A+ G  + A +L  EM +  +
Sbjct: 494 GTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDV 553

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR 505
           + DD  F  LL A +H G V +G   F  M +IH + P++ HYGCMVD+LGRAG +E A 
Sbjct: 554 KADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAF 613

Query: 506 NLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565
           +L++ MP++PNDVIW + L+ACR ++N+       + +  +       +VLLSN++A  G
Sbjct: 614 DLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPEKVGIHVLLSNIYASAG 673

Query: 566 MWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM----- 620
            WND  RVR  MKE+  +K+ G S IE+ G++ EF   D+S  +   I  ML  +     
Sbjct: 674 KWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESHTENAQIGLMLQEINCRIS 733

Query: 621 ---WTPDSV 626
              + PD+ 
Sbjct: 734 QVGYVPDTT 742



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 144/560 (25%), Positives = 255/560 (45%), Gaps = 94/560 (16%)

Query: 1   MFVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP 60
           + +     +P NS+      L+ CKTL ++ Q+H  M+  G         KL+A+     
Sbjct: 15  LLLPTTTQKPKNSS------LQTCKTLIELKQLHCNMLKKGVFN----INKLIAA----- 59

Query: 61  CTPLTEFARYIFFKYHAFRE----KKDPFLWNAIIKTYSHGLDPKEALVMFC-LMLDNGV 115
           C  +      + +  +AF+E    K   +  N +I+ Y+     KEA+ ++  +++  G+
Sbjct: 60  CVQMGTH-ESLNYALNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGI 118

Query: 116 SVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQ 175
             D F+   +L ACS++    EG+Q+HG++ K+    DLF+ N LI  Y  CG ++  R+
Sbjct: 119 VPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRK 178

Query: 176 LFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPI--RERNLISWNSVLNGYAQLKS 233
           +FD+M  R+ VS+ S+I+GY      + A  LF  M     E N ++    ++  A+LK 
Sbjct: 179 VFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKD 238

Query: 234 GLQFAWQIFEKMPE----RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMID 289
            L+   ++   M E     + +  N++L   +KCG M   + +FD+   +++V +     
Sbjct: 239 -LELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMY----- 292

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
                                     N +M  YV++G + + L + D M  +    PD  
Sbjct: 293 --------------------------NTIMSNYVQHGLAGEVLVVLDEM-LQKGQRPDKV 325

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           +++  ++A AQLG +  G + H Y+ ++          A+IDMY KCG  E A KVF+ +
Sbjct: 326 TMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSM 385

Query: 410 EDGSVDHWNAMING--------LAIHGLGEL-----------------------AFDLLM 438
            + +V  WN++I G        LA+   GE+                       A DLL 
Sbjct: 386 SNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLR 445

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
           EM+   I+ D +T  G+ +AC + G +      +  + + + +  ++Q    +VD+  R 
Sbjct: 446 EMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEK-NDIHIDMQLGTALVDMFSRC 504

Query: 499 GHIEAARNLIEDMPMEPNDV 518
           G    A  + E+  ME  DV
Sbjct: 505 GDPLNAMRVFEN--MEKRDV 522


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 165/396 (41%), Positives = 249/396 (62%), Gaps = 4/396 (1%)

Query: 228 YAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANM 287
           YA L   L ++  +F +     +  W +++HG    G +  AQ LFD MP++ +VS   M
Sbjct: 72  YASLGR-LDYSVALFGRTQNPSVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAM 130

Query: 288 IDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD 347
           +  YAK G +D AR LFD M +RD V  N M+ GY +NG   +AL +F  M  +    P+
Sbjct: 131 LTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM-LKAKAKPN 189

Query: 348 DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFE 407
           + +++ VLSA  QLG ++ G  +H Y+E +    N   G AL+DMYSKCGS+E+A  VF+
Sbjct: 190 EVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFD 249

Query: 408 QIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKE 467
           +I+D  V  WN+MI G A+HG  + A  L   M R+ + P +ITF G+L+AC H+G V E
Sbjct: 250 KIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTE 309

Query: 468 GLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSAC 527
           G   F  M+  + +EP+++HYGCMV++LGRAGH+E A  L+++M +EP+ V+W TLL AC
Sbjct: 310 GWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGAC 369

Query: 528 RNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPG 587
           R +  + +GE + + L+  + +NS +Y+LLSN++A +G W+   R+R+MMK+  +KK PG
Sbjct: 370 RLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPG 429

Query: 588 CSWIELEGVVHEFFVRDKSRLQVRDIYYMLD--NMW 621
           CS IE+   VHEF     +  + ++IY ML+  N W
Sbjct: 430 CSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGW 465



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 175/376 (46%), Gaps = 76/376 (20%)

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
           LQIH +L +        L   L   Y   G L+++  LF +        + ++I G+   
Sbjct: 47  LQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALR 106

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLH 258
           G++ SA++LFD+MP  E++L+S  ++L  YA+    L  A  +F+ M ERD + WN M+ 
Sbjct: 107 GDVVSAQQLFDTMP--EKSLVSLTAMLTCYAK-HGELDAARVLFDGMEERDGVCWNVMID 163

Query: 259 GCVKCGKMDDAQALFDKMPKR----------DVVS------------WAN---------- 286
           G  + G  ++A  LF +M K            V+S            W +          
Sbjct: 164 GYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQF 223

Query: 287 -------MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQ 339
                  ++D Y+K G ++ AR +FD++  +DVVA N+M+ GY  +G+S +AL++F +M 
Sbjct: 224 NVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSM- 282

Query: 340 CELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSI 399
           C + LHP + + + +LSA    G + +G  I   + KD++ +  K               
Sbjct: 283 CRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKM-KDEYGIEPK--------------- 326

Query: 400 ENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
                         ++H+  M+N L   G  E A++L+  M   +IEPD + +  LL AC
Sbjct: 327 --------------IEHYGCMVNLLGRAGHVEQAYELVKNM---NIEPDPVLWGTLLGAC 369

Query: 460 AHAGLVKEGLLCFELM 475
              G +  G    EL+
Sbjct: 370 RLHGKIALGEKIVELL 385



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 113/235 (48%), Gaps = 11/235 (4%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           E++D   WN +I  Y+    P EALV+F  ML      ++ +   VL AC +LG +E G 
Sbjct: 151 EERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGR 210

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
            +H  +       ++ +   L+ +Y +CG LE AR +FDK+  +D V++NSMI GY   G
Sbjct: 211 WVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHG 270

Query: 200 NIESARELFDS---MPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
             + A +LF S   M +   N I++  +L+        +   W IF KM +   I     
Sbjct: 271 FSQEALQLFKSMCRMGLHPTN-ITFIGILSACGH-SGWVTEGWDIFNKMKDEYGIEPKIE 328

Query: 257 LHGCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRLFD 305
            +GC+     + G ++ A  L   M  + D V W  ++      G++ +  ++ +
Sbjct: 329 HYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVE 383


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 195/626 (31%), Positives = 323/626 (51%), Gaps = 59/626 (9%)

Query: 18   LLLLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
            L LL  C      +D   IH  ++ +G   N HL   L+  +    C  + E A+ +F  
Sbjct: 490  LHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRR--CGSIME-AQNVFEG 546

Query: 75   YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
              A    +D   WN++I  ++     + A  +F  M   G+  DK + + VL  C     
Sbjct: 547  TRA----RDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEA 602

Query: 135  IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
            +E G QIH L+ +     D+ L N LI++Y                              
Sbjct: 603  LELGRQIHMLIIESGLQLDVNLGNALINMY------------------------------ 632

Query: 195  YVKSGNIESARELFDSMPIRERNLISWNSVLNGYA---QLKSGLQFAWQIFEKMPERDLI 251
             ++ G+++ A E+F S+  R RN++SW +++ G+A   + +   +  WQ+     +    
Sbjct: 633  -IRCGSLQDAYEVFHSL--RHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKS 689

Query: 252  SWNSMLHGCVKCGKMDDAQA----LFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
            +++S+L  C+    +D+ +     + +   + D      +I  Y+K G +  AR++FD+M
Sbjct: 690  TFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKM 749

Query: 308  PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
            P RD+++ N M+ GY +NG    AL+    MQ E  +  +  S V +L+A +    +++G
Sbjct: 750  PNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQ-EQGVVLNKFSFVSILNACSSFSALEEG 808

Query: 368  VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
              +H  + K +   + + G ALI MY+KCGS+E A +VF+   + +V  WNAMIN  A H
Sbjct: 809  KRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQH 868

Query: 428  GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
            GL   A D    M++  I+PD  TFT +L+AC H+GLV EG   F  +   H L P ++H
Sbjct: 869  GLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEH 928

Query: 488  YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
            YGC+V +LGRAG  + A  LI  MP  P+  +W TLL ACR + N+ + E  A + + ++
Sbjct: 929  YGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLN 988

Query: 548  SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
            + N + YVLLSN++A  G W+D  ++R +M+ R ++K PG SWIE++ ++HEF   D+S 
Sbjct: 989  ARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSH 1048

Query: 608  LQVRDIYYMLDNM--------WTPDS 625
             +  +IY  L  +        ++PD+
Sbjct: 1049 PETAEIYEELKRLSLEMERAGYSPDT 1074



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 177/717 (24%), Positives = 304/717 (42%), Gaps = 141/717 (19%)

Query: 9   QPCNSTQSTLL-LLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPL 64
           +P  + ++  + L++ C   ++L +  +IHA+M+  G   +  L+  L+  +    C  +
Sbjct: 76  RPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVK--CRSV 133

Query: 65  TEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL 124
           ++ A  +F K      ++D   WN++I  Y+     K+A  +F  M   G    K +   
Sbjct: 134 SD-AHQVFLKM----PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYIS 188

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +L AC     +E G +IH  + +  +  D  +QN L+++Y +C  L  ARQ+F  +  RD
Sbjct: 189 ILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRD 248

Query: 185 SVSYNSMIDGYVKSGNIESARELF-----DSMPIRERNLISW------------------ 221
            VSYN+M+  Y +   +E    LF     + +P  +   I+                   
Sbjct: 249 VVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHK 308

Query: 222 ---NSVLNGYAQLKSGLQF----------AWQIFEKMPERDLISWNSMLHGCVKCGKMDD 268
              N  LN   ++ + L            A Q  E   +RD++ +N+++    + G  ++
Sbjct: 309 LAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEE 368

Query: 269 AQALFDKMPK---------------------------------------RDVVSWANMID 289
           A   + +M                                          DV    ++I 
Sbjct: 369 AFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLIS 428

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
            YA+ G +  AR LF+ MPKRD+++ NA++ GY R     +A++++  MQ E  + P   
Sbjct: 429 MYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSE-GVKPGRV 487

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           + + +LSA         G  IH  + +     NG    AL++MY +CGSI  A  VFE  
Sbjct: 488 TFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGT 547

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
               +  WN+MI G A HG  E A+ L +EM++  +EPD ITF  +L  C +     E L
Sbjct: 548 RARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNP----EAL 603

Query: 470 LCFELMRRIHKL--EPELQ---HYG-CMVDILGRAGHIEAA---------RNLIEDMPM- 513
              EL R+IH L  E  LQ   + G  ++++  R G ++ A         RN++    M 
Sbjct: 604 ---ELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMI 660

Query: 514 ------------------------EPNDVIWRTLLSACRNYENLNVGEPVAKHLI--GMD 547
                                   +P    + ++L AC +   L+ G+ V  H++  G +
Sbjct: 661 GGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYE 720

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL----KKLPGCSWIELEGVVHEF 600
                   L+S  ++  G   DAR+V   M  R++    K + G +   L G   +F
Sbjct: 721 LDTGVGNALIS-AYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQF 776



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 133/571 (23%), Positives = 262/571 (45%), Gaps = 63/571 (11%)

Query: 27  LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFL 86
           L++  +IH   +  G   +  + T L   F    C  +    + +     AF ++ D  +
Sbjct: 300 LDEGKRIHKLAVNEGLNSDIRVGTALATMFVR--CGDVAGAKQAL----EAFADR-DVVV 352

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           +NA+I   +     +EA   +  M  +GV +++ +   VL ACS    +  G  IH  + 
Sbjct: 353 YNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHIS 412

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           +V   SD+ + N LIS+Y RC                               G++  ARE
Sbjct: 413 EVGHSSDVQIGNSLISMYARC-------------------------------GDLPRARE 441

Query: 207 LFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----ISWNSMLHGCVK 262
           LF++MP  +R+LISWN+++ GYA+ +   + A +++++M    +    +++  +L  C  
Sbjct: 442 LFNTMP--KRDLISWNAIIAGYARREDRGE-AMKLYKQMQSEGVKPGRVTFLHLLSACTN 498

Query: 263 CGKMDDAQALFDKMPKRDVVSWANMIDG----YAKLGRVDIARRLFDEMPKRDVVACNAM 318
                D + + + + +  + S  ++ +     Y + G +  A+ +F+    RD+++ N+M
Sbjct: 499 SSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSM 558

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
           + G+ ++G    A ++F  M+ E  L PD  +   VL        ++ G  IH  + +  
Sbjct: 559 IAGHAQHGSYEAAYKLFLEMKKE-GLEPDKITFASVLVGCKNPEALELGRQIHMLIIESG 617

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
             L+   G ALI+MY +CGS+++A +VF  +   +V  W AMI G A  G    AF+L  
Sbjct: 618 LQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFW 677

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEG-LLCFELMRRIHKLEPELQHYGCMVDILGR 497
           +M+    +P   TF+ +L AC  +  + EG  +   ++   ++L+  + +   ++    +
Sbjct: 678 QMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGN--ALISAYSK 735

Query: 498 AGHIEAARNLIEDMPMEPNDVI-WRTLLSACRNYENLNVGEPVAKHLIGMDSS----NSS 552
           +G +  AR + + MP    D++ W  +++    Y    +G    +    M       N  
Sbjct: 736 SGSMTDARKVFDKMP--NRDIMSWNKMIAG---YAQNGLGGTALQFAYQMQEQGVVLNKF 790

Query: 553 SYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583
           S+V + N  +      + +RV + + +R ++
Sbjct: 791 SFVSILNACSSFSALEEGKRVHAEIVKRKMQ 821



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/429 (24%), Positives = 198/429 (46%), Gaps = 54/429 (12%)

Query: 16  STLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           S L+  +  + L    QIH  +I +G   + +L   L+  +    C  L +     +  +
Sbjct: 592 SVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIR--CGSLQD----AYEVF 645

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
           H+ R + +   W A+I  ++   + ++A  +F  M ++G    K + S +LKAC     +
Sbjct: 646 HSLRHR-NVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACL 704

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
           +EG ++   +    +  D  + N LIS Y + G +  AR++FDKM  RD +S+N MI GY
Sbjct: 705 DEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGY 764

Query: 196 VKSGNIESARELFDSMPIRERNLI----SWNSVLNG---YAQLKSGLQFAWQIFEKMPER 248
            ++G   +A +    M  +E+ ++    S+ S+LN    ++ L+ G +   +I ++  + 
Sbjct: 765 AQNGLGGTALQFAYQM--QEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQG 822

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           D+    +++    KCG +++AQ +FD   +++VV+W  MI+ YA+               
Sbjct: 823 DVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQ--------------- 867

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
                           +G + KAL+ F+ M  E  + PD ++   +LSA    G + +G 
Sbjct: 868 ----------------HGLASKALDFFNCMDKE-GIKPDGSTFTSILSACNHSGLVMEGN 910

Query: 369 AIHRYLEKDQ-FSLNGKHGVALIDMYSKCGSIENAIKVFEQI---EDGSVDHWNAMINGL 424
            I   LE     S   +H   L+ +  + G  + A  +  Q+    D +V  W  ++   
Sbjct: 911 RIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAV--WETLLGAC 968

Query: 425 AIHGLGELA 433
            IHG   LA
Sbjct: 969 RIHGNVALA 977



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 152/304 (50%), Gaps = 23/304 (7%)

Query: 9   QPCNSTQSTLLLLRKCKT---LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLT 65
           +P  ST S++L  + C +   L++  ++ A ++ +G+  +T +   L++++S S    +T
Sbjct: 685 KPVKSTFSSIL--KACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKS--GSMT 740

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
           + AR +F K       +D   WN +I  Y+       AL     M + GV ++KFS   +
Sbjct: 741 D-ARKVFDKM----PNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSI 795

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           L ACS    +EEG ++H  + K     D+ +   LIS+Y +CG LE A+++FD    ++ 
Sbjct: 796 LNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNV 855

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAW-QIF 242
           V++N+MI+ Y + G    A + F+ M     + +  ++ S+L+  A   SGL     +IF
Sbjct: 856 VTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILS--ACNHSGLVMEGNRIF 913

Query: 243 EKMPERDLISWNSMLHGCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGR 296
             +  +  +S     +GC+     + G+  +A+ L ++MP   D   W  ++      G 
Sbjct: 914 SSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGN 973

Query: 297 VDIA 300
           V +A
Sbjct: 974 VALA 977


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 197/605 (32%), Positives = 328/605 (54%), Gaps = 53/605 (8%)

Query: 20  LLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L++C   K L    Q+H  +I +   +N H+   L+  +    C  L E AR +F    
Sbjct: 34  VLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIE--CGRLQE-ARCVFDAL- 89

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
               KK    WNA+I  Y      ++A+ +F  M   GV  +  +  ++LKAC+ L  ++
Sbjct: 90  ---VKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALK 146

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G ++H  +R     SD+ +   L+ +Y +CG                            
Sbjct: 147 WGKEVHACIRHGGLESDVRVGTALLRMYGKCG---------------------------- 178

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER----DLIS 252
              +I  AR +FD++     ++ISW  ++  YAQ  +G + A+++  +M +     + I+
Sbjct: 179 ---SINEARRIFDNL--MNHDIISWTVMIGAYAQSGNGKE-AYRLMLQMEQEGFKPNAIT 232

Query: 253 WNSMLHGCVKCGKMDDAQAL----FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           + S+L+ C   G +   + +     D   + DV     ++  YAK G +D AR +FD M 
Sbjct: 233 YVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMK 292

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            RDVV+ N M+G +  +G   +A ++F  MQ E    PD    + +L+A A  G ++   
Sbjct: 293 VRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTE-GCKPDAIMFLSILNACASAGALEWVK 351

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            IHR+       ++ + G AL+ MYSK GSI++A  VF++++  +V  WNAMI+GLA HG
Sbjct: 352 KIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHG 411

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
           LG+ A ++   M    ++PD +TF  +L+AC+HAGLV EG   +  M +++ +EP++ H 
Sbjct: 412 LGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHC 471

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
            CMVD+LGRAG +  A+  I++M ++P++  W  LL +CR Y N+ +GE VAK  + +D 
Sbjct: 472 NCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDP 531

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
            N+++YVLLSN++A  G W+    VR+MM+ER ++K PG SWIE++  +H+F V D S  
Sbjct: 532 KNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHP 591

Query: 609 QVRDI 613
           + ++I
Sbjct: 592 ECKEI 596


>gi|116310106|emb|CAH67125.1| H0315E07.3 [Oryza sativa Indica Group]
 gi|222628896|gb|EEE61028.1| hypothetical protein OsJ_14863 [Oryza sativa Japonica Group]
          Length = 655

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 176/463 (38%), Positives = 256/463 (55%), Gaps = 8/463 (1%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN 217
           N L+S YV  GY+  A  LF +M  R+ VS+N MI GY ++G++  A+ LFD MP  E++
Sbjct: 193 NALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMP--EKD 250

Query: 218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP 277
           ++S  +++ GY Q    +  AW++F+ MP RD ++WN+M+ G V+  ++DDA  LF +MP
Sbjct: 251 VLSRTAIMRGYLQ-NGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMP 309

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
            RD +SW  ++ GY + G +D A   F   P +D ++ N ++ GY   G    AL +   
Sbjct: 310 DRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGYKDEG----ALSLLSE 365

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
           M     L PD A+L +V+S  A L  +  G  +H +  K  F  +     +LI MYSKCG
Sbjct: 366 M-IRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCG 424

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            I  A +VFE I       WNAMI   A HGL + A  +   M +    PD  TF  +L+
Sbjct: 425 LISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILS 484

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
           ACAH G + EG   F  M+    L P   HY CMVD+LGR+G I  A +    +P +   
Sbjct: 485 ACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYDFTRRIPSDHRT 544

Query: 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
             W TL S C ++  + +GE +A++++    S+   Y LLSN++A   MW+ A  VR  M
Sbjct: 545 TAWETLFSVCNSHGEIQLGEIIARNVLKARPSDGGMYTLLSNIYAAKEMWSSAASVRGFM 604

Query: 578 KERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           KER LKK  GCSWIEL+G V  F   D +   +  I   +D++
Sbjct: 605 KERGLKKETGCSWIELKGEVVTFSSNDSNHPLIEQICQEVDSI 647



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 138/496 (27%), Positives = 242/496 (48%), Gaps = 52/496 (10%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           D+F  N  I+ + R G +  AR++FD+M  R+  ++N M+ G +++  +  AR++FD+MP
Sbjct: 33  DVFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMP 92

Query: 213 IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
           +  RN +SW ++L GYA+     + A ++F ++P+R+++SWN+M+ G  + G +  A+ L
Sbjct: 93  V--RNSVSWAALLTGYARCGRVAE-ARELFNRIPDRNVVSWNAMVSGYARNGMVKRAREL 149

Query: 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
           FD MP RD VSW  MI GY K   V  AR LFD MP      CNA++ GYV  GY   A 
Sbjct: 150 FDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAE 209

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY---LEKDQFSLNGKHGVAL 389
            +F  MQ       +  S  ++++  A+ G +  G+A   +    EKD  S       A+
Sbjct: 210 VLFGQMQTR-----NPVSWNVMITGYARAGSM--GIAQRLFDEMPEKDVLSR-----TAI 257

Query: 390 IDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD 449
           +  Y + GS++ A KVF+ +       WN M++G   +   + A  L  EM     + D 
Sbjct: 258 MRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMP----DRDQ 313

Query: 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE 509
           I++  +L      G +      F       +  P          I G     E A +L+ 
Sbjct: 314 ISWNAILQGYVQQGDMDSANAWF-------RRAPNKDAISWNTLISGYKD--EGALSLLS 364

Query: 510 DM---PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS---NMFAG 563
           +M    ++P+      ++S C +  +L  G+ V  HL  + +      +++S   +M++ 
Sbjct: 365 EMIRGGLKPDQATLSVVISICASLVSLGCGKMV--HLWAIKTGFEHDALVMSSLISMYSK 422

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTP 623
            G+ ++A +V  ++ +R+       +W  +        + D++ L+V D+  M    + P
Sbjct: 423 CGLISEASQVFELILQRDT-----VTWNAMIATYAYHGLADEA-LKVFDM--MTKAGFRP 474

Query: 624 D-----SVATSCTHYG 634
           D     S+ ++C H G
Sbjct: 475 DHATFLSILSACAHKG 490



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 4/130 (3%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           KD   WN +I  Y      + AL +   M+  G+  D+ + S+V+  C+ L  +  G  +
Sbjct: 342 KDAISWNTLISGYKD----EGALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMV 397

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H    K  F  D  + + LIS+Y +CG +  A Q+F+ +  RD+V++N+MI  Y   G  
Sbjct: 398 HLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLA 457

Query: 202 ESARELFDSM 211
           + A ++FD M
Sbjct: 458 DEALKVFDMM 467



 Score = 45.8 bits (107), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 86/174 (49%), Gaps = 22/174 (12%)

Query: 15  QSTL-LLLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY 70
           Q+TL +++  C +L  +     +H   I TGF  +  + + L++ +S   C  ++E A  
Sbjct: 375 QATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSK--CGLISE-ASQ 431

Query: 71  IFFKYHAFREKKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKAC 129
           +F        ++D   WNA+I TY+ HGL   EAL +F +M   G   D  +   +L AC
Sbjct: 432 VF----ELILQRDTVTWNAMIATYAYHGL-ADEALKVFDMMTKAGFRPDHATFLSILSAC 486

Query: 130 SRLGLIEEGLQIHGLLRK---VAFGSDLFLQNCLISLYVRCGYL----EFARQL 176
           +  G + EG      +++   +   SD +  +C++ L  R G++    +F R++
Sbjct: 487 AHKGYLYEGCYHFRSMQEDWNLVPRSDHY--SCMVDLLGRSGFIHQAYDFTRRI 538


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 203/615 (33%), Positives = 331/615 (53%), Gaps = 50/615 (8%)

Query: 14  TQSTLL-LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFAR 69
           +QST   + R C  L+ +   +Q+H   + T F  +  + T  +  +    C  L++ A+
Sbjct: 274 SQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMK--CNNLSD-AQ 330

Query: 70  YIF--FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
            +F     H  +       +NAII  Y+      EAL MF L+  +G+ +D+ S S   +
Sbjct: 331 KLFNSLPNHNLQS------YNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFR 384

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           AC+ +    EGLQ+HGL  K    S++ + N ++ +Y +CG L  A  +F++M  RD+VS
Sbjct: 385 ACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVS 444

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
           +N++I  + ++GN E    LF  M                   L+SG+           E
Sbjct: 445 WNAIIAAHEQNGNEEKTLSLFVWM-------------------LQSGM-----------E 474

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRL 303
            D  ++ S+L  C     ++    + +++ K     D      +ID Y+K G ++ A +L
Sbjct: 475 PDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKL 534

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
            D + ++ VV+ NA++ G+     S +A + F  M  E+ + PD+ +   +L   A L  
Sbjct: 535 HDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKM-LEMGVDPDNFTYATILDTCANLVT 593

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           ++ G  IH  + K +   +      L+DMYSKCG++++   +FE+  +     WNAM+ G
Sbjct: 594 VELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCG 653

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
            A HGLGE A  +   M+  +++P+  TF  +L AC H GLV++GL  F  M   + L+P
Sbjct: 654 YAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDP 713

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
           +L+HY C+VDI+GR+G +  A  LIE MP E + VIWRTLLS C+ + N+ V E  A  +
Sbjct: 714 QLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSI 773

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVR 603
           + ++  +S++YVLLSN++A  GMWN+  ++R MM+   LKK PGCSWIE++  VH F V 
Sbjct: 774 LQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVG 833

Query: 604 DKSRLQVRDIYYMLD 618
           DK+  + ++IY  LD
Sbjct: 834 DKAHPRSKEIYENLD 848



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 144/555 (25%), Positives = 263/555 (47%), Gaps = 66/555 (11%)

Query: 119 KFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD 178
           K + S + + CS    +  G Q H  +    F   +F+ NCLI +Y++C  LEFA ++FD
Sbjct: 42  KKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFD 101

Query: 179 KMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQF 237
            M  RD+VS+N+M+ GY   G+I  A++LFD+MP  ER+++SWNS+++GY  L +G  + 
Sbjct: 102 GMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMP--ERDVVSWNSLISGY--LHNGDHRK 157

Query: 238 AWQIFEKMPERDLISWNSMLHGCVK-CGKMDD------AQALFDKMP-KRDVVSWANMID 289
              +F +M     +   +     +K C  ++D         L  KM    DVV+ + ++D
Sbjct: 158 VIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLD 217

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
            YAK  ++D + + F  MP+++ V+ +A++ G V+N      LE+F  MQ +  +    +
Sbjct: 218 MYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQ-KAGVGVSQS 276

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           +   V  + A L  +  G  +H +  K  F  +   G A +DMY KC ++ +A K+F  +
Sbjct: 277 TFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSL 336

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
            + ++  +NA+I G A    G  A  +   +++  +  D+++ +G   ACA      EGL
Sbjct: 337 PNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGL 396

Query: 470 LCFEL-MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM----------------- 511
               L M+ +   +  +     ++D+ G+ G +  A  + E+M                 
Sbjct: 397 QVHGLSMKSL--CQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQ 454

Query: 512 -----------------PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI----GMDSSN 550
                             MEP++  + ++L AC  ++ LN G  +   +I    G+DS  
Sbjct: 455 NGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFV 514

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQV 610
               + L +M++  GM   A ++   + E+ +      SW     ++  F ++ +S    
Sbjct: 515 G---IALIDMYSKCGMMEKAEKLHDRLAEQTV-----VSW---NAIISGFSLQKQSEEAQ 563

Query: 611 RDIYYMLDNMWTPDS 625
           +    ML+    PD+
Sbjct: 564 KTFSKMLEMGVDPDN 578



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 152/629 (24%), Positives = 268/629 (42%), Gaps = 131/629 (20%)

Query: 25  KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF------------ 72
           K L    Q HARMI T F     +T  L+  +    C+ L EFA  +F            
Sbjct: 56  KALCPGKQAHARMILTEFKPTVFVTNCLIQMYIK--CSDL-EFAFKVFDGMPQRDTVSWN 112

Query: 73  ---FKYHAFRE------------KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV 117
              F Y    +            ++D   WN++I  Y H  D ++ + +F  M   G   
Sbjct: 113 AMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVF 172

Query: 118 DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLF 177
           D+ + ++VLK+CS L     G+QIHGL  K+ F  D+   + L+ +Y +C  L+ + Q F
Sbjct: 173 DRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFF 232

Query: 178 DKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP-----IRERNLISWNSVLNGYAQLK 232
             M  ++ VS++++I G V++ ++    ELF  M      + +    S      G + L+
Sbjct: 233 HSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALR 292

Query: 233 SGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYA 292
            G Q      +     D++   + L   +KC  + DAQ LF+ +P  ++ S+  +I GYA
Sbjct: 293 LGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYA 352

Query: 293 KLGRVDIARRLF----------DEMP-----------------------------KRDVV 313
           +  +   A  +F          DE+                              + ++ 
Sbjct: 353 RSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNIC 412

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK------- 366
             NA++  Y + G  ++A  +F+ M     +  D  S   +++A  Q G+ +K       
Sbjct: 413 VANAILDMYGKCGALVEACLVFEEM-----VSRDAVSWNAIIAAHEQNGNEEKTLSLFVW 467

Query: 367 ----------------------------GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS 398
                                       G+ IH  + K +  L+   G+ALIDMYSKCG 
Sbjct: 468 MLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGM 527

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
           +E A K+ +++ + +V  WNA+I+G ++    E A     +M  + ++PD+ T+  +L+ 
Sbjct: 528 MEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDT 587

Query: 459 CAHAGLVKEGLLCFELMRRIHK--LEPELQH----YGCMVDILGRAGHIEAARNLIEDMP 512
           CA+       L+  EL ++IH   ++ ELQ        +VD+  + G+++  + + E  P
Sbjct: 588 CAN-------LVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAP 640

Query: 513 MEPNDVIWRTLLSACRNYENLNVGEPVAK 541
              + V W  ++     Y    +GE   K
Sbjct: 641 -NRDFVTWNAMVCG---YAQHGLGEEALK 665


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 188/540 (34%), Positives = 303/540 (56%), Gaps = 9/540 (1%)

Query: 88  NAIIKTYSHGLDPKEALVMF-CLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           N +++  S    P++ + ++  L   N  ++D+FS   +LKA S++     GL+IHGL  
Sbjct: 89  NQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNHGLEIHGLAS 148

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           K+ F  D F+Q  LI++Y  C  +  AR LFDKM   D+V++N +IDGY ++G+ + A  
Sbjct: 149 KLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALR 208

Query: 207 LFDSMPIRER--NLISWNSVLNGYAQLKSGLQFAWQIFEKMPER----DLISWNSMLHGC 260
           LF+ M   +   + +   +VL+        L +   I E + +     D     ++++  
Sbjct: 209 LFEDMRSSDMKPDSVILCTVLSACGH-AGNLSYGRTIHEFVKDNGYAIDSHLQTALINMY 267

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
             CG MD A+ ++D +  + ++    M+ GYAKLG V  AR +FD+M +RD+V  +AM+ 
Sbjct: 268 ANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMIS 327

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           GY  +    +AL++FD M  +  + PD  +++ V+SA + +G + +   IH Y+++  F 
Sbjct: 328 GYAESDQPQEALKLFDEMLQKRSV-PDQITMLSVISACSHVGALAQANWIHTYVDRSGFG 386

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
                  ALIDMY+KCG++  A +VFE +   +V  W++MIN  A+HG  + A  L   M
Sbjct: 387 RALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRM 446

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500
           + ++IEP+ +TF G+L AC HAGLV+EG   F  M   H + P  +HYGCMVD+  RA  
Sbjct: 447 KEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANF 506

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560
           +  A  LIE MP  PN +IW +L+SAC+ +    +GE  AK L+ ++  +  + V+LSN+
Sbjct: 507 LRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNI 566

Query: 561 FAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +A    WND   +R  M  + + K    S IE+   VH F + D+   Q  +IY  LD +
Sbjct: 567 YAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEIYEKLDEV 626



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 122/448 (27%), Positives = 221/448 (49%), Gaps = 36/448 (8%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           S  S L  + K    N   +IH      GF+ +  + T L+A ++S  C  + + AR +F
Sbjct: 123 SFPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYAS--CRRIMD-ARLLF 179

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL 132
            K        D   WN II  Y       +AL +F  M  + +  D      VL AC   
Sbjct: 180 DKMC----HPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHA 235

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
           G +  G  IH  ++   +  D  LQ  LI++Y  CG ++ AR+++D +  +  +   +M+
Sbjct: 236 GNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAML 295

Query: 193 DGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA---QLKSGLQFAWQIFEKMPERD 249
            GY K G ++ AR +FD M   ER+L+ W+++++GYA   Q +  L+   ++ +K    D
Sbjct: 296 SGYAKLGMVKDARFIFDQMI--ERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPD 353

Query: 250 LISWNSMLHGCVKCGKMDDA---QALFDKMPKRDVVSWAN-MIDGYAKLGRVDIARRLFD 305
            I+  S++  C   G +  A       D+      +S  N +ID YAK G +  AR +F+
Sbjct: 354 QITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFE 413

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
            MP+++V++ ++M+  +  +G +  A+++F  M+ E+ + P+  + + VL A    G ++
Sbjct: 414 NMPRKNVISWSSMINAFAMHGNADSAIKLFRRMK-EVNIEPNGVTFIGVLYACGHAGLVE 472

Query: 366 KGVAIHRYLEKDQFSLNGKHGVA--------LIDMYSKCGSIENAIKVFEQIEDG-SVDH 416
           +G       EK   S+  +HG++        ++D+Y +   +  AI++ E +    +V  
Sbjct: 473 EG-------EKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVII 525

Query: 417 WNAMINGLAIHG---LGELAFDLLMEME 441
           W ++++   +HG   LGE A   L+E+E
Sbjct: 526 WGSLMSACQVHGEAELGEFAAKRLLELE 553


>gi|413935435|gb|AFW69986.1| hypothetical protein ZEAMMB73_442164 [Zea mays]
          Length = 658

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 180/463 (38%), Positives = 257/463 (55%), Gaps = 8/463 (1%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN 217
           N L+S Y   GYL+ A +LF +M   D VS+N+MI GY ++G ++ AR LFD MP   ++
Sbjct: 196 NALLSGYAGYGYLKDAEELFGRMQRPDRVSWNAMITGYTRAGMMQVARRLFDEMP--GKD 253

Query: 218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP 277
            +SW +++ GY Q    +  AW++F+ MP+RD+++WN+M+ G V   ++DDA  LF  MP
Sbjct: 254 TVSWTAIVRGYLQ-NGDVDAAWEVFQDMPDRDVLAWNTMMGGFVVSDRLDDALRLFADMP 312

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
            RD+VSW  ++ GY + G +D A   F  M ++D  + N ++ GY   G    AL +   
Sbjct: 313 DRDLVSWNTILQGYIQQGDMDSATTWFRSMLEKDETSWNTVISGYKDEG----ALSLLSE 368

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
           M    Y  PD A+  +V+S  A L  +  G  +H    K  F  +     +LI MYSKCG
Sbjct: 369 MTRGGY-RPDQATWSVVISVCASLAALGCGRMVHICTIKTGFEHDALVMSSLISMYSKCG 427

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            I  A +VF+ I       WNAMI   A HGL   A  L   M +    PD  TF  +L+
Sbjct: 428 LITEASQVFDLIVQRDTVTWNAMIATYAYHGLAAEALALFDRMTKDRFSPDHATFLSVLS 487

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
           ACAH G + EG   F  M++   L P   HY CMVD+LGR+G +  A N    +P     
Sbjct: 488 ACAHKGYLYEGCHYFRSMQQDWNLVPRSDHYSCMVDLLGRSGFVHQAYNFTRKIPSNLQI 547

Query: 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
             W TL S+C  + ++ +GE VAK+++    S+   Y LLSN++A  GMW+ A  VR +M
Sbjct: 548 NAWETLFSSCNAHGDIQLGELVAKNVLQSRPSDGGMYTLLSNIYAAKGMWSSAATVRGLM 607

Query: 578 KERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           KE+ LKK  GCSWIEL+G V  F   D +   +  I   +DN+
Sbjct: 608 KEQGLKKETGCSWIELKGDVVSFSSNDNAHPLIEQICQEVDNL 650



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 216/444 (48%), Gaps = 36/444 (8%)

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
           R      D+   N  I  + R G +  AR++FD+M  R+  ++N M+ G  ++G +  AR
Sbjct: 28  RAPRHAGDVGRWNSDIMAHFRAGRVGAARRVFDEMRERNVFTWNCMVSGLARNGLLADAR 87

Query: 206 ELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGK 265
            +FD+MP   RN +SW ++L GYA+ +  +  A  +F++MP R+++SWN+M+ G ++ G 
Sbjct: 88  GVFDAMP--SRNSVSWAALLTGYAR-RGRVAEARDLFDRMPHRNVVSWNAMVSGYLRNGM 144

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA-CNAMMGGYVR 324
           +D A+ LFD MP RD VSW  M+ GY +  R   AR +FD  P     + CNA++ GY  
Sbjct: 145 VDRARELFDAMPARDDVSWLMMVSGYMRRKRFREAREIFDRAPSPPPTSVCNALLSGYAG 204

Query: 325 NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK 384
            GY   A E+F  MQ      PD  S   +++   + G +     + R L  +    +  
Sbjct: 205 YGYLKDAEELFGRMQ-----RPDRVSWNAMITGYTRAGMMQ----VARRLFDEMPGKDTV 255

Query: 385 HGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS 444
              A++  Y + G ++ A +VF+ + D  V  WN M+ G  +    + A  L  +M    
Sbjct: 256 SWTAIVRGYLQNGDVDAAWEVFQDMPDRDVLAWNTMMGGFVVSDRLDDALRLFADMP--- 312

Query: 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHI-EA 503
            + D +++  +L      G +      F  M     LE +   +  ++     +G+  E 
Sbjct: 313 -DRDLVSWNTILQGYIQQGDMDSATTWFRSM-----LEKDETSWNTVI-----SGYKDEG 361

Query: 504 ARNLIEDMP---MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS-- 558
           A +L+ +M      P+   W  ++S C +   L  G  V  H+  + +      +++S  
Sbjct: 362 ALSLLSEMTRGGYRPDQATWSVVISVCASLAALGCGRMV--HICTIKTGFEHDALVMSSL 419

Query: 559 -NMFAGLGMWNDARRVRSMMKERN 581
            +M++  G+  +A +V  ++ +R+
Sbjct: 420 ISMYSKCGLITEASQVFDLIVQRD 443



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/375 (29%), Positives = 192/375 (51%), Gaps = 33/375 (8%)

Query: 159 CLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNL 218
            L++ Y R G +  AR LFD+M  R+ VS+N+M+ GY+++G ++ ARELFD+MP R+   
Sbjct: 103 ALLTGYARRGRVAEARDLFDRMPHRNVVSWNAMVSGYLRNGMVDRARELFDAMPARDD-- 160

Query: 219 ISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLIS-WNSMLHGCVKCGKMDDAQALFDKMP 277
           +SW  +++GY + K   + A +IF++ P     S  N++L G    G + DA+ LF +M 
Sbjct: 161 VSWLMMVSGYMRRKR-FREAREIFDRAPSPPPTSVCNALLSGYAGYGYLKDAEELFGRMQ 219

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
           + D VSW  MI GY + G + +ARRLFDEMP +D V+  A++ GY++NG    A E+F +
Sbjct: 220 RPDRVSWNAMITGYTRAGMMQVARRLFDEMPGKDTVSWTAIVRGYLQNGDVDAAWEVFQD 279

Query: 338 MQCELYLHPDDASLV--IVLSAIAQLGHIDKGVAIHRYL-EKDQFSLNGKHGVALIDMYS 394
           M       PD   L    ++        +D  + +   + ++D  S N      ++  Y 
Sbjct: 280 M-------PDRDVLAWNTMMGGFVVSDRLDDALRLFADMPDRDLVSWN-----TILQGYI 327

Query: 395 KCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTG 454
           + G +++A   F  + +     WN +I+G    G    A  LL EM R    PD  T++ 
Sbjct: 328 QQGDMDSATTWFRSMLEKDETSWNTVISGYKDEG----ALSLLSEMTRGGYRPDQATWSV 383

Query: 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQH----YGCMVDILGRAGHIEAARNLIED 510
           +++ CA    +  G      M  I  ++   +H       ++ +  + G I  A  +  D
Sbjct: 384 VISVCASLAALGCG-----RMVHICTIKTGFEHDALVMSSLISMYSKCGLITEASQVF-D 437

Query: 511 MPMEPNDVIWRTLLS 525
           + ++ + V W  +++
Sbjct: 438 LIVQRDTVTWNAMIA 452



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/455 (24%), Positives = 199/455 (43%), Gaps = 66/455 (14%)

Query: 72  FFKYHAFREKKDPF----------LWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFS 121
           + +   FRE ++ F          + NA++  Y+     K+A  +F  M       D+ S
Sbjct: 170 YMRRKRFREAREIFDRAPSPPPTSVCNALLSGYAGYGYLKDAEELFGRMQ----RPDRVS 225

Query: 122 ASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
            + ++   +R G+    +Q+   L     G D      ++  Y++ G ++ A ++F  M 
Sbjct: 226 WNAMITGYTRAGM----MQVARRLFDEMPGKDTVSWTAIVRGYLQNGDVDAAWEVFQDMP 281

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQI 241
            RD +++N+M+ G+V S  ++ A  LF  MP  +R+L+SWN++L GY Q +  +  A   
Sbjct: 282 DRDVLAWNTMMGGFVVSDRLDDALRLFADMP--DRDLVSWNTILQGYIQ-QGDMDSATTW 338

Query: 242 FEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSW----------------- 284
           F  M E+D  SWN+++ G    G +     +     + D  +W                 
Sbjct: 339 FRSMLEKDETSWNTVISGYKDEGALSLLSEMTRGGYRPDQATWSVVISVCASLAALGCGR 398

Query: 285 ------------------ANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNG 326
                             +++I  Y+K G +  A ++FD + +RD V  NAM+  Y  +G
Sbjct: 399 MVHICTIKTGFEHDALVMSSLISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYHG 458

Query: 327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD-QFSLNGKH 385
            + +AL +FD M  + +  PD A+ + VLSA A  G++ +G    R +++D        H
Sbjct: 459 LAAEALALFDRMTKDRF-SPDHATFLSVLSACAHKGYLYEGCHYFRSMQQDWNLVPRSDH 517

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDG-SVDHWNAMINGLAIHG---LGELAFDLLMEME 441
              ++D+  + G +  A     +I     ++ W  + +    HG   LGEL    +++  
Sbjct: 518 YSCMVDLLGRSGFVHQAYNFTRKIPSNLQINAWETLFSSCNAHGDIQLGELVAKNVLQ-- 575

Query: 442 RLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
             S   D   +T L N  A  G+         LM+
Sbjct: 576 --SRPSDGGMYTLLSNIYAAKGMWSSAATVRGLMK 608



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 19/179 (10%)

Query: 9   QPCNSTQSTLLLLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLT 65
           +P  +T S ++ +  C +L  +     +H   I TGF  +  + + L++ +S   C  +T
Sbjct: 375 RPDQATWSVVISV--CASLAALGCGRMVHICTIKTGFEHDALVMSSLISMYSK--CGLIT 430

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASL 124
           E A  +F        ++D   WNA+I TY+ HGL   EAL +F  M  +  S D  +   
Sbjct: 431 E-ASQVF----DLIVQRDTVTWNAMIATYAYHGL-AAEALALFDRMTKDRFSPDHATFLS 484

Query: 125 VLKACSRLGLIEEGLQIHGLLRK---VAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
           VL AC+  G + EG      +++   +   SD +  +C++ L  R G++  A     K+
Sbjct: 485 VLSACAHKGYLYEGCHYFRSMQQDWNLVPRSDHY--SCMVDLLGRSGFVHQAYNFTRKI 541


>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
          Length = 620

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 184/542 (33%), Positives = 295/542 (54%), Gaps = 37/542 (6%)

Query: 110 MLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY 169
           + D     D  S + ++ A +R G++ +      L  +     ++     L+S Y R G 
Sbjct: 62  LFDGTPERDVVSWTALVSAYARRGMLRDA---RSLFDRSDARRNVVTWTALLSGYARAGL 118

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA 229
           ++ A  LF +M  R+ VS+N+M++ Y  +G    A  LFD MP+R+    SWN +L    
Sbjct: 119 VDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRMPVRDAG--SWNILLAMLV 176

Query: 230 QLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMID 289
           +  S +  A ++F +MPERD+++W +M+ G  + G +D+A+ LFD MP+R+VVSW  MI 
Sbjct: 177 RSGS-VDKARELFGRMPERDVMAWTTMVDGVARSGNVDEARLLFDSMPERNVVSWNAMIS 235

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM----------- 338
           GY +  R+D A  LF +MP RD+ +CN M+ G+++N    +A ++FD M           
Sbjct: 236 GYTRNHRLDEALDLFTKMPHRDIASCNIMITGFIQNKDLKRARKLFDEMPERNVVTWTTM 295

Query: 339 --------QCELYL-----------HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF 379
                   Q EL L            P+  + +  L A + L  + +G  +H+ + K  F
Sbjct: 296 MNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCEGKQVHQMICKTAF 355

Query: 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLME 439
            ++   G AL+++Y+KCG +  A K+F+   +  +  WN +I   A HG+G  A  L  +
Sbjct: 356 QVDTFVGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAIHLYEK 415

Query: 440 MERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG 499
           M+     P+D+T+  LL+AC+H+GLV EGL  FE M     +    +HY C++D+  RAG
Sbjct: 416 MQGNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAG 475

Query: 500 HIEAARNLIEDMPMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
            ++ A+ LI  + ++P +  +W  LL  C  + N ++G   A++LI  +  N+ +Y LLS
Sbjct: 476 RLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLIQAEPDNAGTYTLLS 535

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           N++A  G W +A  +RS M  R LKK PGCSWIE+   VH F  RDKS  +   IY +L 
Sbjct: 536 NIYASAGKWKEAAEIRSEMNNRGLKKQPGCSWIEVANKVHVFVARDKSHSESDLIYGLLQ 595

Query: 619 NM 620
           N+
Sbjct: 596 NI 597



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 145/505 (28%), Positives = 229/505 (45%), Gaps = 113/505 (22%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN 217
           N LI      G +  AR+LFD    RD VS+ +++  Y + G +  AR LFD    R RN
Sbjct: 44  NRLIVDLAAAGRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLFDRSDAR-RN 102

Query: 218 LISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLISWNSMLHG----------------- 259
           +++W ++L+GYA  ++GL   A  +F++MP+R+++SWN+ML                   
Sbjct: 103 VVTWTALLSGYA--RAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRM 160

Query: 260 --------------CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFD 305
                          V+ G +D A+ LF +MP+RDV++W  M+DG A+ G VD AR LFD
Sbjct: 161 PVRDAGSWNILLAMLVRSGSVDKARELFGRMPERDVMAWTTMVDGVARSGNVDEARLLFD 220

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
            MP+R+VV+ NAM+ GY RN    +AL++F  M      H D AS  I+++   Q     
Sbjct: 221 SMPERNVVSWNAMISGYTRNHRLDEALDLFTKMP-----HRDIASCNIMITGFIQ----- 270

Query: 366 KGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
                     KD                     ++ A K+F+++ + +V  W  M+NG  
Sbjct: 271 ---------NKD---------------------LKRARKLFDEMPERNVVTWTTMMNGYL 300

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG-----LLC---FE---- 473
                EL+  L   M    I P+ +TF G L+AC+    + EG     ++C   F+    
Sbjct: 301 KGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCEGKQVHQMICKTAFQVDTF 360

Query: 474 ----------------LMRRIHKL--EPELQHYGCMVDILGRAGHIEAARNLIEDMP--- 512
                           L R++  L  E +L  +  ++      G    A +L E M    
Sbjct: 361 VGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAIHLYEKMQGNG 420

Query: 513 MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS--SNSSSYVLLSNMFAGLGMWNDA 570
             PNDV +  LLSAC +   ++ G  + + ++   S       Y  L ++ +  G  +DA
Sbjct: 421 YRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDA 480

Query: 571 RRVRSMMKERNLKKLPGCSWIELEG 595
           +R+   +K   +K   G  W  L G
Sbjct: 481 KRLIHYLK---IKPASGSVWSALLG 502



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 191/414 (46%), Gaps = 50/414 (12%)

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM-PKRDVVSWANMIDGYAKLGR 296
           A ++F+  PERD++SW +++    + G + DA++LFD+   +R+VV+W  ++ GYA+ G 
Sbjct: 59  ARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLFDRSDARRNVVTWTALLSGYARAGL 118

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           VD A  LF  MP+R+VV+ N M+  Y   G +  A  +FD M        D  S  I+L+
Sbjct: 119 VDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRMPVR-----DAGSWNILLA 173

Query: 357 AIAQLGHIDKGVAIH-RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
            + + G +DK   +  R  E+D  +        ++D  ++ G+++ A  +F+ + + +V 
Sbjct: 174 MLVRSGSVDKARELFGRMPERDVMAW-----TTMVDGVARSGNVDEARLLFDSMPERNVV 228

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            WNAMI+G   +   + A DL  +M    I   +I  TG +                + +
Sbjct: 229 SWNAMISGYTRNHRLDEALDLFTKMPHRDIASCNIMITGFIQN--------------KDL 274

Query: 476 RRIHKLEPELQH-----YGCMVDILGRAGHIEAARNLIEDMPM---EPNDVIWRTLLSAC 527
           +R  KL  E+       +  M++   +    E +  L   M M    PN V +   L AC
Sbjct: 275 KRARKLFDEMPERNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDAC 334

Query: 528 RNYENLNVGEPVAKHLIGMDSSNSSSYV--LLSNMFAGLGMWNDARRVRSMMKERNLKKL 585
            +   L  G+ V   +I   +    ++V   L N++A  G    AR++  + +E++L   
Sbjct: 335 SDLATLCEGKQV-HQMICKTAFQVDTFVGSALMNVYAKCGEVGLARKLFDLSREKDL--- 390

Query: 586 PGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVA-----TSCTHYG 634
              SW    G++  +         +     M  N + P+ V      ++C+H G
Sbjct: 391 --ISW---NGIIAAYAHHGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACSHSG 439


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 185/538 (34%), Positives = 294/538 (54%), Gaps = 29/538 (5%)

Query: 87  WNAIIKTY-SHGLDPKEALVMFCLMLD------NGVSVDKFSASLVLKACSRLGLIEE-- 137
           WN+I+  Y S+GL PKEA  +F  M +      NG+        ++++A +   L+ E  
Sbjct: 51  WNSIVSGYFSNGL-PKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERN 109

Query: 138 ----GLQIHGLLRK--VAFGSDLFLQ---------NCLISLYVRCGYLEFARQLFDKMGI 182
                  + G +++  V     LF +           +    +  G ++ AR+L+D M +
Sbjct: 110 VVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPV 169

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIF 242
           +D V+  +MI G  + G ++ AR +FD M  RERN+++W +++ GY Q  + +  A ++F
Sbjct: 170 KDVVASTNMIGGLCREGRVDEARLIFDEM--RERNVVTWTTMITGYRQ-NNRVDVARKLF 226

Query: 243 EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
           E MPE+  +SW SML G    G+++DA+  F+ MP + V++   MI G+ ++G +  ARR
Sbjct: 227 EVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARR 286

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           +FD M  RD      M+  Y R G+ ++AL++F  MQ +  + P   SL+ +LS  A L 
Sbjct: 287 VFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQ-GVRPSFPSLISILSVCATLA 345

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
            +  G  +H +L + QF  +      L+ MY KCG +  A  VF++     +  WN++I+
Sbjct: 346 SLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIIS 405

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
           G A HGLGE A  +  EM      P+ +T   +L AC++AG ++EGL  FE M     + 
Sbjct: 406 GYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVT 465

Query: 483 PELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKH 542
           P ++HY C VD+LGRAG ++ A  LIE M ++P+  +W  LL AC+ +  L++ E  AK 
Sbjct: 466 PTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKK 525

Query: 543 LIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
           L   +  N+ +YVLLS++ A    W D   VR  M+  N+ K PGCSWIE+   VH F
Sbjct: 526 LFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMF 583



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 129/436 (29%), Positives = 214/436 (49%), Gaps = 35/436 (8%)

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI 182
           S  +   SR+G I E  +    L+  A GS     N ++S Y   G  + ARQLFD+M  
Sbjct: 21  SFEISRLSRIGKINEARKFFDSLQFKAIGS----WNSIVSGYFSNGLPKEARQLFDEMSE 76

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIF 242
           R+ VS+N ++ GY+K+  I  AR +F+ MP  ERN++SW +++ GY Q +  +  A  +F
Sbjct: 77  RNVVSWNGLVSGYIKNRMIVEARNVFELMP--ERNVVSWTAMVKGYMQ-EGMVGEAESLF 133

Query: 243 EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
            +MPER+ +SW  M  G +  G++D A+ L+D MP +DVV+  NMI G  + GRVD AR 
Sbjct: 134 WRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARL 193

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           +FDEM +R+VV    M+ GY +N     A ++F+ M         + S   +L      G
Sbjct: 194 IFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMP-----EKTEVSWTSMLLGYTLSG 248

Query: 363 HIDKGVAIHRYLE-KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
            I+        +  K   + N     A+I  + + G I  A +VF+ +ED     W  MI
Sbjct: 249 RIEDAEEFFEVMPMKPVIACN-----AMIVGFGEVGEISKARRVFDLMEDRDNATWRGMI 303

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH-- 479
                 G    A DL  +M++  + P   +   +L+ CA    ++ G       R++H  
Sbjct: 304 KAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYG-------RQVHAH 356

Query: 480 ----KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNV 535
               + + ++     ++ +  + G +  A+ L+ D     + ++W +++S    Y +  +
Sbjct: 357 LVRCQFDDDVYVASVLMTMYVKCGELVKAK-LVFDRFSSKDIIMWNSIISG---YASHGL 412

Query: 536 GEPVAKHLIGMDSSNS 551
           GE   K    M SS +
Sbjct: 413 GEEALKIFHEMPSSGT 428



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 116/244 (47%), Gaps = 19/244 (7%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           E +D   W  +IK Y       EAL +F  M   GV     S   +L  C+ L  ++ G 
Sbjct: 292 EDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGR 351

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           Q+H  L +  F  D+++ + L+++YV+CG L  A+ +FD+   +D + +NS+I GY   G
Sbjct: 352 QVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHG 411

Query: 200 NIESARELFDSMP-----IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN 254
             E A ++F  MP       +  LI+  +  +   +L+ GL    +IFE M  +  ++  
Sbjct: 412 LGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGL----EIFESMESKFCVTPT 467

Query: 255 SMLHGCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDI----ARRLF 304
              + C      + G++D A  L + M  K D   W  ++       R+D+    A++LF
Sbjct: 468 VEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLF 527

Query: 305 DEMP 308
           +  P
Sbjct: 528 ENEP 531


>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g42920, chloroplastic; Flags: Precursor
 gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
 gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
 gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
 gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 196/521 (37%), Positives = 296/521 (56%), Gaps = 16/521 (3%)

Query: 113 NGVSVDKFSASLVLKACSRLGLIE-------EGLQIHGLLRKVAFGSDLFLQNCLISLYV 165
           +GV+V    +S  L   + L LI+       E  QIH  L K    SD    + +++   
Sbjct: 9   SGVTVPAMPSSGSLSGNTYLRLIDTQCSTMRELKQIHASLIKTGLISDTVTASRVLAFCC 68

Query: 166 RCGY-LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM----PIRERNLIS 220
                + +A  +F ++  ++   +N++I G+ +S   E A  +F  M    P  +   ++
Sbjct: 69  ASPSDMNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLT 128

Query: 221 WNSVLNGYAQL---KSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP 277
           + SV   Y +L   + G Q    + ++  E D    N+MLH  V CG + +A  +F  M 
Sbjct: 129 YPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMI 188

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
             DVV+W +MI G+AK G +D A+ LFDEMP+R+ V+ N+M+ G+VRNG    AL++F  
Sbjct: 189 GFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFRE 248

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
           MQ E  + PD  ++V +L+A A LG  ++G  IH Y+ +++F LN     ALIDMY KCG
Sbjct: 249 MQ-EKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCG 307

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            IE  + VFE      +  WN+MI GLA +G  E A DL  E+ER  +EPD ++F G+L 
Sbjct: 308 CIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLT 367

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
           ACAH+G V      F LM+  + +EP ++HY  MV++LG AG +E A  LI++MP+E + 
Sbjct: 368 ACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDT 427

Query: 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
           VIW +LLSACR   N+ + +  AK L  +D   +  YVLLSN +A  G++ +A   R +M
Sbjct: 428 VIWSSLLSACRKIGNVEMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLM 487

Query: 578 KERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           KER ++K  GCS IE++  VHEF     +  +  +IY +LD
Sbjct: 488 KERQMEKEVGCSSIEVDFEVHEFISCGGTHPKSAEIYSLLD 528



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 140/486 (28%), Positives = 255/486 (52%), Gaps = 31/486 (6%)

Query: 19  LLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAF 78
           L+  +C T+ ++ QIHA +I TG I +T   ++++A   +SP      +A  +F + +  
Sbjct: 30  LIDTQCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSD--MNYAYLVFTRIN-- 85

Query: 79  REKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV--DKFSASLVLKACSRLGLIE 136
              K+PF+WN II+ +S    P+ A+ +F  ML +  SV   + +   V KA  RLG   
Sbjct: 86  --HKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQAR 143

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           +G Q+HG++ K     D F++N ++ +YV CG L  A ++F  M   D V++NSMI G+ 
Sbjct: 144 DGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFA 203

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----IS 252
           K G I+ A+ LFD MP  +RN +SWNS+++G+ +     + A  +F +M E+D+     +
Sbjct: 204 KCGLIDQAQNLFDEMP--QRNGVSWNSMISGFVR-NGRFKDALDMFREMQEKDVKPDGFT 260

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMP 308
             S+L+ C   G  +  + + + + +     + +    +ID Y K G ++    +F+  P
Sbjct: 261 MVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAP 320

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
           K+ +   N+M+ G   NG+  +A+++F  ++    L PD  S + VL+A A  G + +  
Sbjct: 321 KKQLSCWNSMILGLANNGFEERAMDLFSELE-RSGLEPDSVSFIGVLTACAHSGEVHRAD 379

Query: 369 AIHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ--IEDGSVDHWNAMINGLA 425
              R + EK     + KH   ++++    G +E A  + +   +E+ +V  W+++++   
Sbjct: 380 EFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTV-IWSSLLSACR 438

Query: 426 IHGLGELAFDLLMEMERLSIEPDDIT-FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
             G  E+A      +++L  +PD+   +  L NA A  GL +E +    LM+   ++E E
Sbjct: 439 KIGNVEMAKRAAKCLKKL--DPDETCGYVLLSNAYASYGLFEEAVEQRLLMKE-RQMEKE 495

Query: 485 LQHYGC 490
           +   GC
Sbjct: 496 V---GC 498


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 203/619 (32%), Positives = 326/619 (52%), Gaps = 54/619 (8%)

Query: 12  NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
           +  Q    L+    T+N + QIH  +I      +T L   L+           T F R  
Sbjct: 11  SKVQQIKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKR---------TLFFRQT 61

Query: 72  FFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKAC 129
            + Y  F   + P  FL+N++I  + +     E L +F  +  +G+ +  F+  LVLKAC
Sbjct: 62  KYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKAC 121

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
           +R    + G+ +H                   SL V+CG+              D  +  
Sbjct: 122 TRASSRKLGIDLH-------------------SLVVKCGF------------NHDVAAMT 150

Query: 190 SMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER- 248
           S++  Y  SG +  A +LFD +P  +R++++W ++ +GY       + A  +F+KM E  
Sbjct: 151 SLLSIYSGSGRLNDAHKLFDEIP--DRSVVTWTALFSGYTTSGRHRE-AIDLFKKMVEMG 207

Query: 249 ---DLISWNSMLHGCVKCGKMDDAQALFDKMP----KRDVVSWANMIDGYAKLGRVDIAR 301
              D      +L  CV  G +D  + +   M     +++      +++ YAK G+++ AR
Sbjct: 208 VKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKAR 267

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
            +FD M ++D+V  + M+ GY  N +  + +E+F  M  E  L PD  S+V  LS+ A L
Sbjct: 268 SVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQE-NLKPDQFSIVGFLSSCASL 326

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
           G +D G      +++ +F  N     ALIDMY+KCG++    +VF+++++  +   NA I
Sbjct: 327 GALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAI 386

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
           +GLA +G  +L+F +  + E+L I PD  TF GLL  C HAGL+++GL  F  +  ++ L
Sbjct: 387 SGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYAL 446

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
           +  ++HYGCMVD+ GRAG ++ A  LI DMPM PN ++W  LLS CR  ++  + E V K
Sbjct: 447 KRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLK 506

Query: 542 HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
            LI ++  N+ +YV LSN+++  G W++A  VR MM ++ +KK+PG SWIELEG VHEF 
Sbjct: 507 ELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFL 566

Query: 602 VRDKSRLQVRDIYYMLDNM 620
             DKS      IY  L+++
Sbjct: 567 ADDKSHPLSDKIYAKLEDL 585


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 210/627 (33%), Positives = 324/627 (51%), Gaps = 45/627 (7%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF------- 72
           LLR    L+     HAR++ +     T L   LV++++          AR +F       
Sbjct: 26  LLRSAPNLSGARAAHARILKSPVAGETFLLNTLVSTYAR---LGRLRDARRVFDEIPLRN 82

Query: 73  -FKYHA-----------------FREKKDP--FLWNAIIKTYS-HGL-DPKEALVMFCLM 110
            F Y+A                 F    DP    +NA++   + HG     +AL     M
Sbjct: 83  TFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAM 142

Query: 111 LDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYL 170
             +   ++ +S +  L AC+       G Q+HGL+ +     D+ +++ L+ +Y +C   
Sbjct: 143 HADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERP 202

Query: 171 EFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM-----PIRERNLISWNSVL 225
           E AR++FD M  R+ VS+NS+I  Y ++G +  A  LF  M        E  L S  S  
Sbjct: 203 EDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSAC 262

Query: 226 NGYAQLKSGLQFAWQIFEKMPERD-LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSW 284
            G A  + G Q    + +    RD ++  N+++    KCG+  +A+ +FD MP R +VS 
Sbjct: 263 AGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSE 322

Query: 285 ANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYL 344
            +++ GYAK   V+ A+ +F +M +++V+A N ++  Y +NG   +A+ +F  ++ +  +
Sbjct: 323 TSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRD-SI 381

Query: 345 HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN-GKH-----GVALIDMYSKCGS 398
            P   +   VL+A   +  +  G   H ++ K+ F  + G       G +L+DMY K GS
Sbjct: 382 WPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGS 441

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
           I++  KVFE++       WNAMI G A +G  + A  L   M   +  PD +T  G+L+A
Sbjct: 442 IDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSA 501

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
           C H+GLV EG   F  M   H + P   HY CMVD+LGRAGH++ A  LI DMPMEP+ V
Sbjct: 502 CGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSV 561

Query: 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578
           +W +LL ACR ++N+ +GE  A  L  +D  NS  YVLLSNM+A +G W +  RVR  MK
Sbjct: 562 LWASLLGACRLHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMK 621

Query: 579 ERNLKKLPGCSWIELEGVVHEFFVRDK 605
           +R + K PGCSWIE+   ++ F  RDK
Sbjct: 622 DRGVSKQPGCSWIEIGRKMNVFLARDK 648


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 196/596 (32%), Positives = 320/596 (53%), Gaps = 50/596 (8%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           +H+R++  G   +T + T LV  ++   C    +  R +F K       +D   WN +I 
Sbjct: 249 VHSRILNAGHESDTAVGTALVKMYAK--CGSYKD-CRQVFEKL----VNRDLIAWNTMIG 301

Query: 93  TYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGS 152
             + G   +EA  ++  M   GV  +K +  ++L AC     +  G +IH  + K  F S
Sbjct: 302 GLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTS 361

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           D+ +QN LIS+Y RCG                               +I+ AR +FD M 
Sbjct: 362 DIGVQNALISMYSRCG-------------------------------SIKDARLVFDKMV 390

Query: 213 IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLISWNSMLHGCVKCGKMDD 268
              +++ISW +++ G A+   G + A  ++++M     E + +++ S+L+ C     ++ 
Sbjct: 391 --RKDVISWTAMIGGLAKSGFGAE-ALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEW 447

Query: 269 AQALFDKMPKRDVVSWAN----MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVR 324
            + +  ++ +  + + A+    +++ Y+  G V  AR++FD M +RD+VA NAM+GGY  
Sbjct: 448 GRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAA 507

Query: 325 NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK 384
           +    +AL++FD +Q E  L PD  + + +L+A A  G ++    IH  + K  F  +  
Sbjct: 508 HNLGKEALKLFDRLQ-EEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTS 566

Query: 385 HGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS 444
            G AL+  Y+KCGS  +A  VFE++   +V  WNA+I G A HG G+ A  L   M+   
Sbjct: 567 VGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEG 626

Query: 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504
           ++PD +TF  LL+AC+HAGL++EG   F  M +   + P ++HYGCMVD+LGRAG ++ A
Sbjct: 627 VKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEA 686

Query: 505 RNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL 564
             LI+ MP + N  IW  LL ACR + N+ V E  A+  + +D  N+  YV LS+M+A  
Sbjct: 687 EALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAA 746

Query: 565 GMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           GMW+ A ++R +M++R + K PG SWI++   +H F   D+S  Q   IY  LD +
Sbjct: 747 GMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRL 802



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 163/615 (26%), Positives = 276/615 (44%), Gaps = 99/615 (16%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L++C  + D+    Q+H  +I    + + +    L+  +    C  + E AR ++ K  
Sbjct: 29  MLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQ--CGSIEE-ARQVWKKLS 85

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
               ++    WNA++  Y      ++AL +   M  +G++ D+ +    L +C   G +E
Sbjct: 86  YM--ERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALE 143

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G +IH    +     D+ + NC++++Y +CG +E AR++FDKM  +  VS+   I GY 
Sbjct: 144 WGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYA 203

Query: 197 KSGNIESARELFDSMPIRE--RNLISWNSVLNGY---AQLKSGLQFAWQIFEKMPERDLI 251
             G  E+A E+F  M       N I++ SVLN +   A LK G     +I     E D  
Sbjct: 204 DCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTA 263

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
              +++    KCG   D + +F+K+  RD+++W  MI G A+                  
Sbjct: 264 VGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE------------------ 305

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
                         GY  +A E+++ MQ E  + P+  + VI+L+A      +  G  IH
Sbjct: 306 -------------GGYWEEASEVYNQMQREGVM-PNKITYVILLNACVNSAALHWGKEIH 351

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
             + K  F+ +     ALI MYS+CGSI++A  VF+++    V  W AMI GLA  G G 
Sbjct: 352 SRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGA 411

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL-----Q 486
            A  +  EM++  +EP+ +T+T +LNAC+    ++ G       RRIH+   E       
Sbjct: 412 EALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWG-------RRIHQQVVEAGLATDA 464

Query: 487 HYG-CMVDILGRAGHIEAARNLIEDM---------------------------------- 511
           H G  +V++    G ++ AR + + M                                  
Sbjct: 465 HVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEE 524

Query: 512 PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI----GMDSSNSSSYVLLSNMFAGLGMW 567
            ++P+ V +  +L+AC N  +L     +  H +    G  S  S    L+S  +A  G +
Sbjct: 525 GLKPDKVTYINMLNACANSGSLEWAREI--HTLVRKGGFFSDTSVGNALVST-YAKCGSF 581

Query: 568 NDARRVRSMMKERNL 582
           +DA  V   M +RN+
Sbjct: 582 SDASIVFEKMTKRNV 596


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 201/676 (29%), Positives = 341/676 (50%), Gaps = 92/676 (13%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           L   C  +N   ++HA ++  G  +N  L+TKL+  + +     L+   R  F   H   
Sbjct: 28  LFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLS---RSTFDYIH--- 81

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEAL----VMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
            KK+ F WN+II  Y       EA+     +F +     +  D ++   +LKAC  L   
Sbjct: 82  -KKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSL--- 137

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
            +G ++H  + K+ F  D+F+   L+ LY R G L+ A ++F  M ++D  S+N+MI G+
Sbjct: 138 VDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGF 197

Query: 196 VKSGNIESARELFDSM----------------PI---------------------RERNL 218
            ++GN   A  + + M                P+                      + ++
Sbjct: 198 CQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDV 257

Query: 219 ISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP- 277
              N+++N Y++    LQ A  +F++M  RDL+SWNS++    +      A   F  M  
Sbjct: 258 FVSNALINMYSKFGR-LQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQL 316

Query: 278 ---------------------------------------KRDVVSWANMIDGYAKLGRVD 298
                                                   +DVV    +++ YAKLG ++
Sbjct: 317 GGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMN 376

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
            A  +FD++P++D ++ N ++ GY +NG + +A++ ++ M+      P+  + V ++ A 
Sbjct: 377 CAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAY 436

Query: 359 AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWN 418
           + +G + +G+ IH  L K+   L+      LID+Y KCG +E+A+ +F +I   +   WN
Sbjct: 437 SHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWN 496

Query: 419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRI 478
           A+I  L IHG GE A  L  +M    ++ D ITF  LL+AC+H+GLV EG  CF++M++ 
Sbjct: 497 AIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKE 556

Query: 479 HKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEP 538
           + ++P L+HYGCMVD+LGRAG++E A  L+ +MP++P+  IW  LLSAC+ Y N  +G  
Sbjct: 557 YGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTL 616

Query: 539 VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVH 598
            +  L+ +DS N   YVLLSN++A    W    +VRS+ ++R L+K PG S + +     
Sbjct: 617 ASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAE 676

Query: 599 EFFVRDKSRLQVRDIY 614
            F+  +++  +  +IY
Sbjct: 677 VFYTGNQTHPKYTEIY 692



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 159/334 (47%), Gaps = 21/334 (6%)

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPK-RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           +N++ + CV         AL     K +++V    +I+ Y   G + ++R  FD + K++
Sbjct: 25  FNALFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKN 84

Query: 312 VVACNAMMGGYVRNGYSMKALEIFD---NMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
           + + N+++  YVR G   +A+   +   +M    +L PD  +   +L A   L  +D G 
Sbjct: 85  IFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSL--VD-GK 141

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            +H  + K  F  +     +L+ +YS+ G ++ A KVF  +    V  WNAMI+G   +G
Sbjct: 142 KVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNG 201

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
               A  +L  M+   ++ D IT   +L  CA +  V  G+L   L    H L+ ++   
Sbjct: 202 NAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVL-IHLHVLKHGLDSDVFVS 260

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSACRNYENLNVGEPVAKHLIGMD 547
             ++++  + G ++ A+ + +   ME  D++ W ++++A   YE  N      +   GM 
Sbjct: 261 NALINMYSKFGRLQDAQMVFDQ--MEVRDLVSWNSIIAA---YEQNNDPSTALRFFKGMQ 315

Query: 548 ----SSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
                 +  + V L+++F+ L   +D R  RS++
Sbjct: 316 LGGIRPDLLTVVSLTSIFSQL---SDQRISRSIL 346


>gi|296082839|emb|CBI22140.3| unnamed protein product [Vitis vinifera]
          Length = 428

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 169/406 (41%), Positives = 255/406 (62%), Gaps = 7/406 (1%)

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPE 247
            +++D Y K G++E AR++FD M   ERN++SWNS+L GY  LK+G ++ A  +F++MPE
Sbjct: 26  TALVDFYCKLGDMEIARKMFDEMA--ERNVVSWNSMLAGY--LKAGDMEKASSLFQQMPE 81

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
           R+  SWN+M+ G V+ G +D A++ FD MP+++ VSW  MI GY+K G VD A  LFD++
Sbjct: 82  RNFASWNAMISGHVEFGDIDSARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQV 141

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDK 366
             +D++  NAM+  Y +N    +AL +F+NM    + + PD+ +L  V+SA +QLG +  
Sbjct: 142 GGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRF 201

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G  I  Y+ +    ++G    AL+D+Y+KCGSI+ A ++F  +    +  + AMI G  I
Sbjct: 202 GPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGI 261

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           +G    A  L  EM    I P+ ITF GLL A  HAGLV+EG  CF  M++ + L P + 
Sbjct: 262 NGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYRCFTSMKK-YNLVPSVD 320

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HYG MVD+ GRAG ++ A  LI+ MPM+P+  +W  LL ACR + N+  GE  A+H   +
Sbjct: 321 HYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFEL 380

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           +   +    LLSN++A    W+D +R+R + KE+   K+PGCSW+E
Sbjct: 381 EPDTTGYRSLLSNIYASGERWDDVKRLRKVTKEKGFSKIPGCSWME 426



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 11/205 (5%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV--DKFSASLVLKACSRLGLIEEGL 139
           KD  L+NA+I  Y+    P EAL +F  ML+  V+V  D+ + + V+ ACS+LG +  G 
Sbjct: 144 KDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGP 203

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
            I   +R++    D  L   L+ LY +CG ++ A +LF  +  +D V+Y +MI G   +G
Sbjct: 204 WIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGING 263

Query: 200 NIESARELFDSMPIRE--RNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLIS---- 252
               A +LFD M   +   N I++  +L  Y    +GL +  ++ F  M + +L+     
Sbjct: 264 KAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNH--AGLVEEGYRCFTSMKKYNLVPSVDH 321

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMP 277
           +  M+    + G++ +A  L   MP
Sbjct: 322 YGIMVDLFGRAGRLQEALELIKSMP 346


>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
 gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
          Length = 580

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 191/552 (34%), Positives = 309/552 (55%), Gaps = 16/552 (2%)

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
           ++ F    + F++N +I  +S  L   E+  ++ ++L +G   DK +   +L+A   +  
Sbjct: 23  FNHFTPNPNLFIYNTLISAFS-SLKKIESFYLYNVLLSSGECPDKQTLLYLLQA---VNF 78

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           I +  QIH         S  +LQN LI +Y+  G +  A Q+F+KM   D VS+N MI G
Sbjct: 79  ISQVKQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVG 138

Query: 195 YVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER---- 248
           Y K G    A  LF  M     E +  +   +L    QL + ++F   +   M  R    
Sbjct: 139 YAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGN-VKFGKAVHGWMERRKPTI 197

Query: 249 --DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
             +LI  N++L   VKC K++ A   F  + ++D+VSW  ++ G AK+G ++ AR  F +
Sbjct: 198 SSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQ 257

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           MP RD+V+ N+++ GY   G      E+  +M  E  + PD  +++ ++SA  + G +D+
Sbjct: 258 MPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVI-PDTVTMISLVSAATESGALDQ 316

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G   H ++ + Q  L+   G ALIDMY KCGSIE A +VF++I    V  W  MI GLA 
Sbjct: 317 GRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWTTMITGLAF 376

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           HG G  A +L  EM+   + PDD+TF  +L+AC+H+GLV +G+  F  M   + +EP ++
Sbjct: 377 HGYGSKALELFSEMQE-DVSPDDVTFVSVLSACSHSGLVDQGIKVFSSMTD-YGIEPGVE 434

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HYGC+VD+L R+G +  A+++I+ MPM+P+  IW  +L+AC+   ++ + E  ++ L+ +
Sbjct: 435 HYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQGDVELAEIASRELLNL 494

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           D      Y LLSN++A  G W+ ++++R  M+ R +KK  GCS + ++GVVH F   DK 
Sbjct: 495 DPEEEGGYTLLSNIYAASGRWSYSKKIRETMESRGVKKTAGCSSVVVDGVVHNFISADKC 554

Query: 607 RLQVRDIYYMLD 618
                DI  +L+
Sbjct: 555 HPGWVDISSILN 566



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 137/464 (29%), Positives = 228/464 (49%), Gaps = 24/464 (5%)

Query: 11  CNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY 70
           C   Q+ L LL+    ++ V QIH + I TG     +L   L+  +  +    L   A  
Sbjct: 63  CPDKQTLLYLLQAVNFISQVKQIHCQAIVTGLFSFGYLQNTLIKVYLEN---GLVRLAHQ 119

Query: 71  IFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS 130
           +F K  +     D   +N +I  Y+      EA+ +F  M+  G+  D+F+   +L +C 
Sbjct: 120 VFEKMPS----PDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCG 175

Query: 131 RLGLIEEGLQIHGLL--RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY 188
           +LG ++ G  +HG +  RK    S+L L N L+ +YV+C  +E A + F  +  +D VS+
Sbjct: 176 QLGNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSW 235

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER 248
           N ++ G  K G +E AR  F  MP R+  ++SWNS++ GYA           I + + E+
Sbjct: 236 NMIVAGCAKVGELEQARLFFYQMPCRD--IVSWNSLVTGYACRGDFASVKELIVDMVMEK 293

Query: 249 ---DLISWNSMLHGCVKCGKMDD---AQALFDKMP-KRDVVSWANMIDGYAKLGRVDIAR 301
              D ++  S++    + G +D    A     +M  K D    + +ID Y K G ++ A 
Sbjct: 294 VIPDTVTMISLVSAATESGALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERAS 353

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
           R+F E+ K+DV     M+ G   +GY  KALE+F  MQ +  + PDD + V VLSA +  
Sbjct: 354 RVFKEINKKDVTVWTTMITGLAFHGYGSKALELFSEMQED--VSPDDVTFVSVLSACSHS 411

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAM 420
           G +D+G+ +   +         +H   L+D+ ++ G +  A  + +Q+    S   W AM
Sbjct: 412 GLVDQGIKVFSSMTDYGIEPGVEHYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAM 471

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAG 463
           +N     G  ELA   +   E L+++P++   +T L N  A +G
Sbjct: 472 LNACQAQGDVELA--EIASRELLNLDPEEEGGYTLLSNIYAASG 513


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 201/676 (29%), Positives = 341/676 (50%), Gaps = 92/676 (13%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           L   C  +N   ++HA ++  G  +N  L+TKL+  + +     L+   R  F   H   
Sbjct: 28  LFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLS---RSTFDYIH--- 81

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEAL----VMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
            KK+ F WN+II  Y       EA+     +F +     +  D ++   +LKAC  L   
Sbjct: 82  -KKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSL--- 137

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
            +G ++H  + K+ F  D+F+   L+ LY R G L+ A ++F  M ++D  S+N+MI G+
Sbjct: 138 VDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGF 197

Query: 196 VKSGNIESARELFDSM----------------PI---------------------RERNL 218
            ++GN   A  + + M                P+                      + ++
Sbjct: 198 CQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDV 257

Query: 219 ISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP- 277
              N+++N Y++    LQ A  +F++M  RDL+SWNS++    +      A   F  M  
Sbjct: 258 FVSNALINMYSKFGR-LQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQL 316

Query: 278 ---------------------------------------KRDVVSWANMIDGYAKLGRVD 298
                                                   +DVV    +++ YAKLG ++
Sbjct: 317 GGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMN 376

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
            A  +FD++P++D ++ N ++ GY +NG + +A++ ++ M+      P+  + V ++ A 
Sbjct: 377 CAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAY 436

Query: 359 AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWN 418
           + +G + +G+ IH  L K+   L+      LID+Y KCG +E+A+ +F +I   +   WN
Sbjct: 437 SHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWN 496

Query: 419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRI 478
           A+I  L IHG GE A  L  +M    ++ D ITF  LL+AC+H+GLV EG  CF++M++ 
Sbjct: 497 AIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKE 556

Query: 479 HKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEP 538
           + ++P L+HYGCMVD+LGRAG++E A  L+ +MP++P+  IW  LLSAC+ Y N  +G  
Sbjct: 557 YGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTL 616

Query: 539 VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVH 598
            +  L+ +DS N   YVLLSN++A    W    +VRS+ ++R L+K PG S + +     
Sbjct: 617 ASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAE 676

Query: 599 EFFVRDKSRLQVRDIY 614
            F+  +++  +  +IY
Sbjct: 677 VFYTGNQTHPKYTEIY 692



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 159/334 (47%), Gaps = 21/334 (6%)

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPK-RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           +N++ + CV         AL     K +++V    +I+ Y   G + ++R  FD + K++
Sbjct: 25  FNALFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKN 84

Query: 312 VVACNAMMGGYVRNGYSMKALEIFD---NMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
           + + N+++  YVR G   +A+   +   +M    +L PD  +   +L A   L  +D G 
Sbjct: 85  IFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSL--VD-GK 141

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            +H  + K  F  +     +L+ +YS+ G ++ A KVF  +    V  WNAMI+G   +G
Sbjct: 142 KVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNG 201

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
               A  +L  M+   ++ D IT   +L  CA +  V  G+L   L    H L+ ++   
Sbjct: 202 NAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVL-IHLHVLKHGLDSDVFVS 260

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSACRNYENLNVGEPVAKHLIGMD 547
             ++++  + G ++ A+ + +   ME  D++ W ++++A   YE  N      +   GM 
Sbjct: 261 NALINMYSKFGRLQDAQMVFDQ--MEVRDLVSWNSIIAA---YEQNNDPSTALRFFKGMQ 315

Query: 548 ----SSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
                 +  + V L+++F+ L   +D R  RS++
Sbjct: 316 LGGIRPDLLTVVSLTSIFSQL---SDQRISRSIL 346


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 185/614 (30%), Positives = 328/614 (53%), Gaps = 77/614 (12%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D   W ++I   +     K+A  +F  M + GV  DK +   +L+AC+    +E+G ++
Sbjct: 275 RDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKV 334

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H  +++V + +++++   ++S+Y +CG +E A ++FD +  R+ VS+ +MI G+ + G I
Sbjct: 335 HARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRI 394

Query: 202 ESARELFDSMPIR--ERNLISWNSVLNGYAQ---LKSGLQF------------------- 237
           + A   F+ M     E N +++ S+L   +    LK G Q                    
Sbjct: 395 DEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTAL 454

Query: 238 ------------AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV--- 282
                       A ++FEK+ ++++++WN+M+   V+  + D+A A F  + K  +    
Sbjct: 455 LSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNS 514

Query: 283 -------------------SWAN-----------------MIDGYAKLGRVDIARRLFDE 306
                               W +                 ++  +   G +  A+ LF++
Sbjct: 515 STFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFND 574

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           MPKRD+V+ N ++ G+V++G +  A + F  MQ E  + PD  +   +L+A A    + +
Sbjct: 575 MPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQ-ESGIKPDKITFTGLLNACASPEALTE 633

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G  +H  + +  F  +   G  LI MY+KCGSIE+A +VF ++   +V  W +MI G A 
Sbjct: 634 GRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQ 693

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           HG G+ A +L  +M++  ++PD ITF G L+ACAHAGL++EGL  F+ M+  + +EP ++
Sbjct: 694 HGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFN-IEPRME 752

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HYGCMVD+ GRAG +  A   I  M +EP+  +W  LL AC+ + N+ + E  A+  + +
Sbjct: 753 HYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLEL 812

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           D +++  +V+LSN++A  GMW +  ++R +M +R + K PG SWIE++G VH F+  DK+
Sbjct: 813 DPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKT 872

Query: 607 RLQVRDIYYMLDNM 620
             Q  +I+  L+ +
Sbjct: 873 HPQTEEIHAELERL 886



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 131/523 (25%), Positives = 233/523 (44%), Gaps = 76/523 (14%)

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
           F + KD    NA++   S      EA+ +   +  + + + + + S +L+ C +   + +
Sbjct: 69  FADIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGD 128

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G +I+  ++K     D+F+ N LI++Y +CG    A+Q+FD M  +D  S+N ++ GYV+
Sbjct: 129 GERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQ 188

Query: 198 SGNIESARELF-----DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLIS 252
            G  E A +L      DS+   +R  +S  +       +  G +    I +   + DL  
Sbjct: 189 HGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFV 248

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
             ++++  +KCG + DA  +FD +P RD+V+W +MI G A+ GR   A  LF  M +  V
Sbjct: 249 GTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGV 308

Query: 313 V-----------ACN----------------------------AMMGGYVRNGYSMKALE 333
                       ACN                            A++  Y + G    ALE
Sbjct: 309 QPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALE 368

Query: 334 IFD------------------------------NMQCELYLHPDDASLVIVLSAIAQLGH 363
           +FD                              N   E  + P+  + + +L A +    
Sbjct: 369 VFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSA 428

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           + +G  I  ++ +  +  + +   AL+ MY+KCGS+++A +VFE+I   +V  WNAMI  
Sbjct: 429 LKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITA 488

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
              H   + A      + +  I+P+  TFT +LN C  +  ++ G     L+ +   LE 
Sbjct: 489 YVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKA-GLES 547

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           +L     +V +    G + +A+NL  DMP + + V W T+++ 
Sbjct: 548 DLHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAG 589



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 129/492 (26%), Positives = 240/492 (48%), Gaps = 41/492 (8%)

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA 149
           ++ T   G  PK   V+F  + D         A+ VL   S+ G   E +Q+  L R  +
Sbjct: 52  MLTTSFSGRCPKGRCVVFADIKDTQ------KANAVLNRLSKAGQFNEAMQV--LERVDS 103

Query: 150 FGSDLFLQ--NCLISLYVRCGYLEFARQLFD---KMGIR-DSVSYNSMIDGYVKSGNIES 203
               ++ Q  + L+ L ++   L    ++++   K G++ D   +N++I+ Y K GN  S
Sbjct: 104 SHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTIS 163

Query: 204 ARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
           A+++FD M  RE+++ SWN +L GY Q    +   +   Q+ +   + D  ++ SML+ C
Sbjct: 164 AKQIFDDM--REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNAC 221

Query: 261 VKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
                +D  + L++ + K     D+     +I+ + K G +  A ++FD +P RD+V   
Sbjct: 222 ADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWT 281

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
           +M+ G  R+G   +A  +F  M+ E  + PD  + V +L A      +++G  +H  +++
Sbjct: 282 SMITGLARHGRFKQACNLFQRME-EEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKE 340

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
             +      G A++ MY+KCGS+E+A++VF+ ++  +V  W AMI G A HG  + AF  
Sbjct: 341 VGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLF 400

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG------- 489
             +M    IEP+ +TF  +L AC+    +K G    +     H +E     YG       
Sbjct: 401 FNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQD-----HIIEAG---YGSDDRVRT 452

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD-S 548
            ++ +  + G ++ A  + E +  + N V W  +++A   +E  +      + L+     
Sbjct: 453 ALLSMYAKCGSLKDAHRVFEKISKQ-NVVAWNAMITAYVQHEQYDNALATFQALLKEGIK 511

Query: 549 SNSSSYVLLSNM 560
            NSS++  + N+
Sbjct: 512 PNSSTFTSILNV 523



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 126/447 (28%), Positives = 211/447 (47%), Gaps = 54/447 (12%)

Query: 31  NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAI 90
            QI   +I  G+  +  + T L++ ++   C  L + A  +F K      K++   WNA+
Sbjct: 433 QQIQDHIIEAGYGSDDRVRTALLSMYAK--CGSLKD-AHRVFEKI----SKQNVVAWNAM 485

Query: 91  IKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAF 150
           I  Y        AL  F  +L  G+  +  + + +L  C     +E G  +H L+ K   
Sbjct: 486 ITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGL 545

Query: 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDS 210
            SDL + N L+S++V CG L  A+ LF+ M  RD VS+N++I G+V+ G  + A + F  
Sbjct: 546 ESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKM 605

Query: 211 MPIR--ERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGK 265
           M     + + I++  +LN  A    L  G +    I E   + D++    ++    KCG 
Sbjct: 606 MQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGS 665

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
           ++DA  +F K+PK++V SW +MI GYA+ GR                             
Sbjct: 666 IEDAHQVFHKLPKKNVYSWTSMITGYAQHGR----------------------------- 696

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK- 384
               +ALE+F  MQ E  + PD  + V  LSA A  G I++G  +H +    +F++  + 
Sbjct: 697 --GKEALELFYQMQQE-GVKPDWITFVGALSACAHAGLIEEG--LHHFQSMKEFNIEPRM 751

Query: 385 -HGVALIDMYSKCGSIENAIK--VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEME 441
            H   ++D++ + G +  A++  +  Q+E  S   W A++    +H   ELA       +
Sbjct: 752 EHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDS-RVWGALLGACQVHLNVELAEK--AAQK 808

Query: 442 RLSIEPDDI-TFTGLLNACAHAGLVKE 467
           +L ++P+D   F  L N  A AG+ KE
Sbjct: 809 KLELDPNDNGVFVILSNIYAAAGMWKE 835



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 108/449 (24%), Positives = 194/449 (43%), Gaps = 70/449 (15%)

Query: 9   QPCNSTQSTLL-LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF 67
           +P +ST +++L + +   +L     +H  ++  G   + H++  LV+ F +  C  L   
Sbjct: 511 KPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVN--CGDLMS- 567

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           A+ +F        K+D   WN II  +      + A   F +M ++G+  DK + + +L 
Sbjct: 568 AKNLFNDM----PKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLN 623

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           AC+    + EG ++H L+ + AF  D+ +   LIS+Y +CG +E A Q+F K+  ++  S
Sbjct: 624 ACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYS 683

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
           + SMI GY + G  + A ELF                   Y   + G++  W        
Sbjct: 684 WTSMITGYAQHGRGKEALELF-------------------YQMQQEGVKPDW-------- 716

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS----WANMIDGYAKLGRVDIARRL 303
              I++   L  C   G +++    F  M + ++      +  M+D + + G ++ A   
Sbjct: 717 ---ITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEF 773

Query: 304 FDEMP-KRDVVACNAMMGG---YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
             +M  + D     A++G    ++    + KA       Q +L L P+D  + ++LS I 
Sbjct: 774 IIKMQVEPDSRVWGALLGACQVHLNVELAEKA------AQKKLELDPNDNGVFVILSNIY 827

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
               + K VA  R +  D+  +  K G + I++  K  +  +  K   Q E+        
Sbjct: 828 AAAGMWKEVAKMRKVMLDR-GVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEE-------- 878

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPD 448
                 IH   E    L MEM +L   PD
Sbjct: 879 ------IHAELE---RLHMEMRQLGYVPD 898


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 204/627 (32%), Positives = 328/627 (52%), Gaps = 34/627 (5%)

Query: 19  LLLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
            +L+ C    +L     +HA +   G   N  +   +VA +    C  L +   +  F  
Sbjct: 132 FVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGR--CGALDD--AHQMFDE 187

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV----DKFSASLVLKACSR 131
              R+ +D   WN+I+  Y  G   + AL +    + N  S+    D  +   +L AC+ 
Sbjct: 188 VLERKIEDIVSWNSILAAYVQGGQSRTALRI-AFRMGNHYSLKLRPDAITLVNILPACAS 246

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
           +  ++ G Q+HG   +     D+F+ N L+S+Y +C  +  A ++F+ +  +D VS+N+M
Sbjct: 247 VFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAM 306

Query: 192 IDGYVKSGNIESARELFDSMPIRERNL--ISWNSVLNGYAQLKSGLQFAWQIFEKMP--- 246
           + GY + G+ +SA  LF  M   +  L  I+W++V+ GYAQ   G + A  +F +M    
Sbjct: 307 VTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFE-ALDVFRQMQLYG 365

Query: 247 -ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR-----------DVVSWANMIDGYAKL 294
            E ++++  S+L GC   G +   +     + K            D++    +ID YAK 
Sbjct: 366 LEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKC 425

Query: 295 GRVDIARRLFDEMPKRD--VVACNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASL 351
               +AR +FD +  +D  VV    M+GGY ++G +  AL++F  + + +  L P+  +L
Sbjct: 426 KSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTL 485

Query: 352 VIVLSAIAQLGHIDKGVAIHRY-LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE 410
              L A A+LG +  G  +H Y L  +  S     G  LIDMYSK G I+ A  VF+ ++
Sbjct: 486 SCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMK 545

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470
             +V  W +++ G  +HG GE A  L  +M++L    D ITF  +L AC+H+G+V +G++
Sbjct: 546 LRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMI 605

Query: 471 CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNY 530
            F  M +   + P  +HY CMVD+LGRAG +  A  LI++M MEP  V+W  LLSA R +
Sbjct: 606 YFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIH 665

Query: 531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSW 590
            N+ +GE  A  L  + + N  SY LLSN++A    W D  R+RS+MK   ++K PGCSW
Sbjct: 666 ANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSW 725

Query: 591 IELEGVVHEFFVRDKSRLQVRDIYYML 617
           I+ +     FFV D+S  +   IY +L
Sbjct: 726 IQGKKSTTTFFVGDRSHPESEQIYNLL 752



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 162/542 (29%), Positives = 268/542 (49%), Gaps = 54/542 (9%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LLR+CKTL +    H ++   GF   T + +  V ++     +     A  +        
Sbjct: 36  LLRQCKTLINAKLAHQQIFVHGF---TEMFSYAVGAYIECGAS-----AEAVSLLQRLIP 87

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
                F WNA+I+         + L  +C M   G   D ++   VLKAC  +  +  G 
Sbjct: 88  SHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGA 147

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM---GIRDSVSYNSMIDGYV 196
            +H ++     GS++F+ N ++++Y RCG L+ A Q+FD++    I D VS+NS++  YV
Sbjct: 148 SVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYV 207

Query: 197 KSGNIESA-RELFD-----SMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPE 247
           + G   +A R  F      S+ +R  + I+  ++L   A    L+ G Q           
Sbjct: 208 QGGQSRTALRIAFRMGNHYSLKLRP-DAITLVNILPACASVFALQHGKQVHGFSVRNGLV 266

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
            D+   N+++    KC KM++A  +F+ + K+DVVSW  M+ GY+++G  D A  LF  M
Sbjct: 267 DDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMM 326

Query: 308 P----KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELY-LHPDDASLVIVLSAIAQLG 362
                K DV+  +A++ GY + G+  +AL++F  MQ  LY L P+  +L  +LS  A +G
Sbjct: 327 QEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQ--LYGLEPNVVTLASLLSGCASVG 384

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGV-------ALIDMYSKCGSIENAIKVFEQIE--DGS 413
            +  G   H Y+ K+  +LN             LIDMY+KC S   A  +F+ IE  D +
Sbjct: 385 ALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKN 444

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEM--ERLSIEPDDITFTGLLNACAHAGLVKEGLLC 471
           V  W  MI G A HG    A  L  ++  ++ S++P+  T +  L ACA  G ++ G   
Sbjct: 445 VVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLG--- 501

Query: 472 FELMRRIHKL------EPELQHYG-CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
               R++H        E E+ + G C++D+  ++G I+AAR + ++M +  N V W +L+
Sbjct: 502 ----RQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLR-NVVSWTSLM 556

Query: 525 SA 526
           + 
Sbjct: 557 TG 558


>gi|413925246|gb|AFW65178.1| hypothetical protein ZEAMMB73_703358 [Zea mays]
          Length = 572

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 186/515 (36%), Positives = 284/515 (55%), Gaps = 20/515 (3%)

Query: 85  FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL-GLIEEGLQIHG 143
           FL N +I+  +    P+ +   F  +L +G   D F+   + K+ S+       G Q+H 
Sbjct: 58  FLHNLLIRASAASPSPRLSFAAFSSLLRSGHLPDHFTFPPLAKSASKFPSFPRTGAQVHA 117

Query: 144 LLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG-IRDSVSYNSMIDGYVKSGNIE 202
              +    +D F  N L+++Y         R + +      D VS+N+++ GY + G + 
Sbjct: 118 QAARRGLLADAFAVNSLLAMYAALRDAASMRGVLESCAEAADVVSWNTVVAGYARCGELG 177

Query: 203 SARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE--RDLISWNSMLHGC 260
           +AR  FD MP   RN  SW++++  YA     L  A  +F++ P   R +++WNSM+ G 
Sbjct: 178 NARRAFDGMP--RRNGASWSAMVGAYAAAGQ-LDVARDMFDRAPAAGRSVVTWNSMVAGL 234

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
            + G +  A+ +FD+MP R++VSW  M+ GYA  G VD AR LFD MP++DVV+   M+ 
Sbjct: 235 ARHGLLPLARKMFDEMPARNLVSWNAMVRGYAVNGDVDGARELFDAMPEKDVVSWTCMVS 294

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK---- 376
           GY R G   +ALE+F  MQ    + P++ ++V V SA A+L  + +G   H ++ K    
Sbjct: 295 GYARAGRHAQALELFRTMQSG-DVRPNEVTMVSVFSACARLAALKEGRWAHAFIGKRGMV 353

Query: 377 --DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
             D F+L    G ALIDMY+KCG  + A KVF  ++  +V  WNA+I GLA +G      
Sbjct: 354 LDDGFNL----GAALIDMYAKCGRPDVAAKVFRSLDRKNVSAWNALIAGLAANGDARRCI 409

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
           D+  +M+    +PD +TF  +L ACA AGLV EG  CF  M     ++PEL+HYGCMVD+
Sbjct: 410 DVFEQMKVSDEKPDSVTFVSVLAACARAGLVDEGRRCFRSMSSGFGVQPELKHYGCMVDL 469

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS-- 552
           LGRAG ++ A  L+  MPM P+D +  TLL ACR     +V E V + +  +++   S  
Sbjct: 470 LGRAGLVDEAEELVRGMPMAPDDKVLATLLGACRVRRRPDVAERVRRRIQSLNTKQPSRE 529

Query: 553 SYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPG 587
           SY ++S++ A    W  A + +  M + N+ KL G
Sbjct: 530 SYFMISDVRATADRWAVALKAKGFMHKYNIMKLDG 564



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 99/235 (42%), Gaps = 37/235 (15%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +KD   W  ++  Y+      +AL +F  M    V  ++ +   V  AC+RL  ++EG  
Sbjct: 283 EKDVVSWTCMVSGYARAGRHAQALELFRTMQSGDVRPNEVTMVSVFSACARLAALKEGRW 342

Query: 141 IHGLL--RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
            H  +  R +       L   LI +Y +CG  + A ++F  +  ++  ++N++I G   +
Sbjct: 343 AHAFIGKRGMVLDDGFNLGAALIDMYAKCGRPDVAAKVFRSLDRKNVSAWNALIAGLAAN 402

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLH 258
           G+     ++F+ M                            ++ ++ P  D +++ S+L 
Sbjct: 403 GDARRCIDVFEQM----------------------------KVSDEKP--DSVTFVSVLA 432

Query: 259 GCVKCGKMDDAQALFDKMP-----KRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
            C + G +D+ +  F  M      + ++  +  M+D   + G VD A  L   MP
Sbjct: 433 ACARAGLVDEGRRCFRSMSSGFGVQPELKHYGCMVDLLGRAGLVDEAEELVRGMP 487



 Score = 39.7 bits (91), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 3/103 (2%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           ++K+   WNA+I   +   D +  + +F  M  +    D  +   VL AC+R GL++EG 
Sbjct: 385 DRKNVSAWNALIAGLAANGDARRCIDVFEQMKVSDEKPDSVTFVSVLAACARAGLVDEGR 444

Query: 140 QIHGLLRKVAFGSDLFLQN--CLISLYVRCGYLEFARQLFDKM 180
           +    +    FG    L++  C++ L  R G ++ A +L   M
Sbjct: 445 RCFRSMSS-GFGVQPELKHYGCMVDLLGRAGLVDEAEELVRGM 486


>gi|68611229|emb|CAE03043.3| OSJNBa0084A10.18 [Oryza sativa Japonica Group]
          Length = 729

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 176/456 (38%), Positives = 253/456 (55%), Gaps = 8/456 (1%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN 217
           N L+S YV  GY+  A  LF +M  R+ VS+N MI GY ++G++  A+ LFD MP  E++
Sbjct: 193 NALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMP--EKD 250

Query: 218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP 277
           ++S  +++ GY Q  S +  AW++F+ MP RD ++WN+M+ G V+  ++DDA  LF +MP
Sbjct: 251 VLSRTAIMRGYLQNGS-VDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMP 309

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
            RD +SW  ++ GY + G +D A   F   P +D ++ N ++ GY   G    AL +   
Sbjct: 310 DRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGYKDEG----ALSLLSE 365

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
           M     L PD A+L +V+S  A L  +  G  +H +  K  F  +     +LI MYSKCG
Sbjct: 366 M-IRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCG 424

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            I  A +VFE I       WNAMI   A HGL + A  +   M +    PD  TF  +L+
Sbjct: 425 LISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILS 484

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
           ACAH G + EG   F  M+    L P   HY CMVD+LGR+G I  A +    +P +   
Sbjct: 485 ACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYDFTRRIPSDHRT 544

Query: 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
             W TL S C ++  + +GE +A++++    S+   Y LLSN++A   MW+ A  VR  M
Sbjct: 545 TAWETLFSVCNSHGEIQLGEIIARNVLKARPSDGGMYTLLSNIYAAKEMWSSAASVRGFM 604

Query: 578 KERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
           KER LKK  GCSWIEL+G V  F   D +   +  I
Sbjct: 605 KERGLKKETGCSWIELKGEVVTFSSNDSNHPLIEQI 640



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 138/496 (27%), Positives = 242/496 (48%), Gaps = 52/496 (10%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           D+F  N  I+ + R G +  AR++FD+M  R+  ++N M+ G +++  +  AR++FD+MP
Sbjct: 33  DVFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMP 92

Query: 213 IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
           +  RN +SW ++L GYA+     + A ++F ++P+R+++SWN+M+ G  + G +  A+ L
Sbjct: 93  V--RNSVSWAALLTGYARCGRVAE-ARELFNRIPDRNVVSWNAMVSGYARNGMVKRAREL 149

Query: 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
           FD MP RD VSW  MI GY K   V  AR LFD MP      CNA++ GYV  GY   A 
Sbjct: 150 FDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAE 209

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY---LEKDQFSLNGKHGVAL 389
            +F  MQ       +  S  ++++  A+ G +  G+A   +    EKD  S       A+
Sbjct: 210 VLFGQMQTR-----NPVSWNVMITGYARAGSM--GIAQRLFDEMPEKDVLSR-----TAI 257

Query: 390 IDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD 449
           +  Y + GS++ A KVF+ +       WN M++G   +   + A  L  EM     + D 
Sbjct: 258 MRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMP----DRDQ 313

Query: 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE 509
           I++  +L      G +      F       +  P          I G     E A +L+ 
Sbjct: 314 ISWNAILQGYVQQGDMDSANAWF-------RRAPNKDAISWNTLISGYKD--EGALSLLS 364

Query: 510 DM---PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS---NMFAG 563
           +M    ++P+      ++S C +  +L  G+ V  HL  + +      +++S   +M++ 
Sbjct: 365 EMIRGGLKPDQATLSVVISICASLVSLGCGKMV--HLWAIKTGFEHDALVMSSLISMYSK 422

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTP 623
            G+ ++A +V  ++ +R+       +W  +        + D++ L+V D+  M    + P
Sbjct: 423 CGLISEASQVFELILQRDT-----VTWNAMIATYAYHGLADEA-LKVFDM--MTKAGFRP 474

Query: 624 D-----SVATSCTHYG 634
           D     S+ ++C H G
Sbjct: 475 DHATFLSILSACAHKG 490



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 4/130 (3%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           KD   WN +I  Y      + AL +   M+  G+  D+ + S+V+  C+ L  +  G  +
Sbjct: 342 KDAISWNTLISGYKD----EGALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMV 397

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H    K  F  D  + + LIS+Y +CG +  A Q+F+ +  RD+V++N+MI  Y   G  
Sbjct: 398 HLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLA 457

Query: 202 ESARELFDSM 211
           + A ++FD M
Sbjct: 458 DEALKVFDMM 467



 Score = 45.8 bits (107), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 86/174 (49%), Gaps = 22/174 (12%)

Query: 15  QSTL-LLLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY 70
           Q+TL +++  C +L  +     +H   I TGF  +  + + L++ +S   C  ++E A  
Sbjct: 375 QATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSK--CGLISE-ASQ 431

Query: 71  IFFKYHAFREKKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKAC 129
           +F        ++D   WNA+I TY+ HGL   EAL +F +M   G   D  +   +L AC
Sbjct: 432 VF----ELILQRDTVTWNAMIATYAYHGL-ADEALKVFDMMTKAGFRPDHATFLSILSAC 486

Query: 130 SRLGLIEEGLQIHGLLRK---VAFGSDLFLQNCLISLYVRCGYL----EFARQL 176
           +  G + EG      +++   +   SD +  +C++ L  R G++    +F R++
Sbjct: 487 AHKGYLYEGCYHFRSMQEDWNLVPRSDHY--SCMVDLLGRSGFIHQAYDFTRRI 538


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 203/637 (31%), Positives = 322/637 (50%), Gaps = 43/637 (6%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+ C  L      +  H  +   GF  N  +   LVA +S   C  L E +  + F   
Sbjct: 16  VLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSR--CGSLEEAS--MIFDEI 71

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLML------DNGVSVDKFSASLVLKACS 130
             R   D   WN+I+  +    +   AL +F  M             D  S   +L AC 
Sbjct: 72  TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 131

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
            L  + +  ++HG   +     D+F+ N LI  Y +CG +E A ++F+ M  +D VS+N+
Sbjct: 132 SLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 191

Query: 191 MIDGYVKSGNIESARELFDSMPIRERN----LISWNSVLNGYAQLKSGLQFAWQIFEKM- 245
           M+ GY +SGN ++A ELF +M  R+ N    +++W +V+ GY+Q     + A  +F +M 
Sbjct: 192 MVAGYSQSGNFKAAFELFKNM--RKENIPLDMVTWTAVIAGYSQRGCSHE-ALNVFRQMI 248

Query: 246 ---PERDLISWNSMLHGCVKCGKMDDAQALFDKMPK--------------RDVVSWANMI 288
                 + ++  S+L  C   G       +     K               D++ +  +I
Sbjct: 249 FSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALI 308

Query: 289 DGYAKLGRVDIARRLFDEMP--KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELY-LH 345
           D Y+K      AR +FD++P  +R+VV    M+GG+ + G S  AL++F  M  E Y + 
Sbjct: 309 DMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVA 368

Query: 346 PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVA--LIDMYSKCGSIENAI 403
           P+  ++  +L A A L  I  G  IH Y+ +     +  + VA  LI+MYSKCG ++ A 
Sbjct: 369 PNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTAR 428

Query: 404 KVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAG 463
            VF+ +   S   W +M+ G  +HG G  A D+  +M +    PDDITF  +L AC+H G
Sbjct: 429 HVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCG 488

Query: 464 LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTL 523
           +V +GL  F+ M   + L P  +HY   +D+L R G ++ A   ++DMPMEP  V+W  L
Sbjct: 489 MVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVAL 548

Query: 524 LSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583
           LSACR + N+ + E     L+ M++ N  SY L+SN++A  G W D  R+R +MK+  +K
Sbjct: 549 LSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIK 608

Query: 584 KLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           K PGCSW++ +     FFV D+S      IY +L+++
Sbjct: 609 KRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESL 645



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 144/450 (32%), Positives = 228/450 (50%), Gaps = 35/450 (7%)

Query: 110 MLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY 169
           ML  G  +D F+   VLKAC  L     G   HGL+    F S++F+ N L+++Y RCG 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 170 LEFARQLFDKM---GIRDSVSYNSMIDGYVKSGNIESARELFDSM-------PIRER-NL 218
           LE A  +FD++   GI D +S+NS++  +VKS N  +A +LF  M       P  ER ++
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 219 ISWNSVLNGYAQLKSGLQ---FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK 275
           IS  ++L     LK+  Q               D+   N+++    KCG M++A  +F+ 
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 180

Query: 276 MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR----DVVACNAMMGGYVRNGYSMKA 331
           M  +DVVSW  M+ GY++ G    A  LF  M K     D+V   A++ GY + G S +A
Sbjct: 181 MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEA 240

Query: 332 LEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY-LEKDQFSLNGKHGV--- 387
           L +F  M     L P+  +++ VLSA A LG   +G+ IH Y L+    +L+   G    
Sbjct: 241 LNVFRQMIFSGSL-PNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDE 299

Query: 388 ------ALIDMYSKCGSIENAIKVFEQI--EDGSVDHWNAMINGLAIHGLGELAFDLLME 439
                 ALIDMYSKC S + A  +F+ I  E+ +V  W  MI G A +G    A  L +E
Sbjct: 300 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 359

Query: 440 M--ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG-CMVDILG 496
           M  E   + P+  T + +L ACAH   ++ G      + R H+ +        C++++  
Sbjct: 360 MISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYS 419

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           + G ++ AR++ + M  + + + W ++++ 
Sbjct: 420 KCGDVDTARHVFDSMS-QKSAISWTSMMTG 448


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 200/619 (32%), Positives = 323/619 (52%), Gaps = 54/619 (8%)

Query: 12  NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
           +  Q    L+    T N + Q+H  +I      +T L   L+           T F R  
Sbjct: 11  SKVQQIKTLISVASTFNHLKQVHVSLIHHHLHHDTFLVNLLLKR---------TLFFRQT 61

Query: 72  FFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKAC 129
            + +  F   + P  FL+N +I  + +     E L +F  +  +G+++  F+  LVLKAC
Sbjct: 62  HYSFLLFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKAC 121

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
           +R    + G+ +H                   SL V+CG+              D  +  
Sbjct: 122 TRASNRKLGIDLH-------------------SLVVKCGF------------NHDVAAMT 150

Query: 190 SMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER- 248
           S++  Y  SG +  A ++F+ +P  ER++++W ++ +GY       + A  +F+KM E  
Sbjct: 151 SLLSIYSGSGRLNDAHKVFEEIP--ERSVVTWTALFSGYTTAGKHRE-AIDLFKKMVEMG 207

Query: 249 ---DLISWNSMLHGCVKCGKMDDAQALFDKMP----KRDVVSWANMIDGYAKLGRVDIAR 301
              D      +L  CV  G +D  + +   M     +++      +++ YAK G+++ AR
Sbjct: 208 VRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKAR 267

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
            +FD M ++D+V  + M+ GY  N +  + +E F  M  E  L PD  S+V  LS+ A L
Sbjct: 268 SVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQE-NLKPDQFSIVGFLSSCASL 326

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
           G +D G      +++ +F  N     ALIDMY+KCG++    +VF+++++  +   NA I
Sbjct: 327 GALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAI 386

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
           +GLA +G  +L+F +  + E+L I PD  TF GLL  C HAGL+++GL  F  +  ++ L
Sbjct: 387 SGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYAL 446

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
           +  ++HYGCMVD+ GRAG ++ A  LI DMPM PN ++W  LLS CR  ++  + E V K
Sbjct: 447 KRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLK 506

Query: 542 HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
            LI ++  N+ +YV LSN+++  G W++A  VR MM  + +KK+PG SWIELEG VHEF 
Sbjct: 507 ELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGTVHEFL 566

Query: 602 VRDKSRLQVRDIYYMLDNM 620
             DKS      IY  L+++
Sbjct: 567 ADDKSHPLSDKIYAKLEDL 585


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 178/514 (34%), Positives = 292/514 (56%), Gaps = 29/514 (5%)

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYV--RCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           QIH    K     +  +QN ++S       G + +ARQLFD +      S+N M  GY +
Sbjct: 32  QIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYSR 91

Query: 198 SGNIESARELFDSMPIRERNL----ISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDL 250
               +    L+  + + ERN+     ++  +  G+ +   L+ G +    + +   + ++
Sbjct: 92  IACPKLGVSLY--LEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNV 149

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKL---------------- 294
            + N++++    CG +D A+ +FD   K DVV+W  MI GY ++                
Sbjct: 150 FAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVN 209

Query: 295 -GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI 353
            G+VD AR+ F +MP+RD V+  AM+ GY+R     +AL +F  MQ    + PD+ ++V 
Sbjct: 210 TGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTS-KIKPDEFTMVS 268

Query: 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
           VL+A AQLG ++ G  I  Y++K++   +   G ALIDMY KCG++E A+ +F  +    
Sbjct: 269 VLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRD 328

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE 473
              W AM+ GLAI+G GE A ++  +M + S+ PD++T+ G+L+AC H G+V EG   F 
Sbjct: 329 KFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFA 388

Query: 474 LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENL 533
            M   H +EP + HYGCMVD+LG+AGH++ A  +I++MPM+PN ++W  LL ACR +++ 
Sbjct: 389 SMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDA 448

Query: 534 NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
            + E   + ++ ++ +N + YVL  N++A    W+  R +R +M +R +KK PGCS IE+
Sbjct: 449 EMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEM 508

Query: 594 EGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVA 627
            G+VHEF   D+S  Q ++IY  L+ M +   +A
Sbjct: 509 NGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIA 542


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 203/637 (31%), Positives = 322/637 (50%), Gaps = 43/637 (6%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+ C  L      +  H  +   GF  N  +   LVA +S   C  L E +  + F   
Sbjct: 123 VLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSR--CGSLEEAS--MIFDEI 178

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLML------DNGVSVDKFSASLVLKACS 130
             R   D   WN+I+  +    +   AL +F  M             D  S   +L AC 
Sbjct: 179 TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 238

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
            L  + +  ++HG   +     D+F+ N LI  Y +CG +E A ++F+ M  +D VS+N+
Sbjct: 239 SLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 298

Query: 191 MIDGYVKSGNIESARELFDSMPIRERN----LISWNSVLNGYAQLKSGLQFAWQIFEKM- 245
           M+ GY +SGN ++A ELF +M  R+ N    +++W +V+ GY+Q     + A  +F +M 
Sbjct: 299 MVAGYSQSGNFKAAFELFKNM--RKENIPLDMVTWTAVIAGYSQRGCSHE-ALNVFRQMI 355

Query: 246 ---PERDLISWNSMLHGCVKCGKMDDAQALFDKMPK--------------RDVVSWANMI 288
                 + ++  S+L  C   G       +     K               D++ +  +I
Sbjct: 356 FSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALI 415

Query: 289 DGYAKLGRVDIARRLFDEMP--KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELY-LH 345
           D Y+K      AR +FD++P  +R+VV    M+GG+ + G S  AL++F  M  E Y + 
Sbjct: 416 DMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVA 475

Query: 346 PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVA--LIDMYSKCGSIENAI 403
           P+  ++  +L A A L  I  G  IH Y+ +     +  + VA  LI+MYSKCG ++ A 
Sbjct: 476 PNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTAR 535

Query: 404 KVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAG 463
            VF+ +   S   W +M+ G  +HG G  A D+  +M +    PDDITF  +L AC+H G
Sbjct: 536 HVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCG 595

Query: 464 LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTL 523
           +V +GL  F+ M   + L P  +HY   +D+L R G ++ A   ++DMPMEP  V+W  L
Sbjct: 596 MVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVAL 655

Query: 524 LSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583
           LSACR + N+ + E     L+ M++ N  SY L+SN++A  G W D  R+R +MK+  +K
Sbjct: 656 LSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIK 715

Query: 584 KLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           K PGCSW++ +     FFV D+S      IY +L+++
Sbjct: 716 KRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESL 752



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 160/519 (30%), Positives = 256/519 (49%), Gaps = 44/519 (8%)

Query: 42  FIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLW-NAIIKTYSHGLDP 100
           FI    L T +VAS+ +   T   ++A  +       R    P +W N +I+ +      
Sbjct: 47  FISPRSLGTGVVASYLACGAT---DYALLVLE-----RVTPSPAVWWNLLIREHIKQGRL 98

Query: 101 KEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCL 160
             A+ + C ML  G  +D F+   VLKAC  L     G   HGL+    F S++F+ N L
Sbjct: 99  DSAINVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNAL 158

Query: 161 ISLYVRCGYLEFARQLFDKM---GIRDSVSYNSMIDGYVKSGNIESARELFDSM------ 211
           +++Y RCG LE A  +FD++   GI D +S+NS++  +VKS N  +A +LF  M      
Sbjct: 159 VAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHE 218

Query: 212 -PIRER-NLISWNSVLNGYAQLKSGLQ---FAWQIFEKMPERDLISWNSMLHGCVKCGKM 266
            P  ER ++IS  ++L     LK+  Q               D+   N+++    KCG M
Sbjct: 219 KPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLM 278

Query: 267 DDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR----DVVACNAMMGGY 322
           ++A  +F+ M  +DVVSW  M+ GY++ G    A  LF  M K     D+V   A++ GY
Sbjct: 279 ENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGY 338

Query: 323 VRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY-LEKDQFSL 381
            + G S +AL +F  M     L P+  +++ VLSA A LG   +G+ IH Y L+    +L
Sbjct: 339 SQRGCSHEALNVFRQMIFSGSL-PNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTL 397

Query: 382 NGKHGV---------ALIDMYSKCGSIENAIKVFEQI--EDGSVDHWNAMINGLAIHGLG 430
           +   G          ALIDMYSKC S + A  +F+ I  E+ +V  W  MI G A +G  
Sbjct: 398 DNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDS 457

Query: 431 ELAFDLLMEM--ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
             A  L +EM  E   + P+  T + +L ACAH   ++ G      + R H+ +      
Sbjct: 458 NDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFV 517

Query: 489 G-CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
             C++++  + G ++ AR++ + M  + + + W ++++ 
Sbjct: 518 ANCLINMYSKCGDVDTARHVFDSMS-QKSAISWTSMMTG 555


>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
 gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 548

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 174/483 (36%), Positives = 277/483 (57%), Gaps = 6/483 (1%)

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           QIHG +   A   D    +  I      G   +A  +F      D   YN+ I    K+ 
Sbjct: 42  QIHGFMLHRALDQDNLFLSQFIDACTSLGLSSYAFSIFSNKTHPDLRLYNTAIKALSKTS 101

Query: 200 NIESARELFDSMPIRERNLISWN--SVLNGYAQLKS---GLQFAWQIFEKMPERDLISWN 254
           +  +A  L+  + I      S++  SVL    +L +   G Q   Q      + D+    
Sbjct: 102 SPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMDVNVAT 161

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
           S++     CG + DA+ LFD +  +DV  W  M+ GY K+G +  AR++F+EMP+R+V++
Sbjct: 162 SLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVIS 221

Query: 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
              ++ GY +     +A+E+F  MQ E  + PD+ +++ VLSA A LG ++ G  IH Y+
Sbjct: 222 WTTLIAGYAQTNRPHEAIELFRKMQLE-EVEPDEIAMLAVLSACADLGALELGEWIHNYI 280

Query: 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
           EK           ALIDMY+K G+I  A++VFE ++  SV  W+ +I  LA+HGLG  A 
Sbjct: 281 EKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHGLGGEAI 340

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
           D+ + ME+  + P+++TF  +L+AC+H G+V  G   F+ M+ ++K+EP+++HYGCM+D+
Sbjct: 341 DMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKIEHYGCMIDL 400

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           L RAG+++ A+ L+ DMP E N +IW +LL+A   + +  + +   KHL  ++  NS +Y
Sbjct: 401 LARAGYLQEAQKLLHDMPFEANAMIWGSLLAASNTHRDAELAQLALKHLAKLEPGNSGNY 460

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           VLLSN +A LG WN++  VR +M+   +KK PG S IE+  +V+EF   D S  QV +IY
Sbjct: 461 VLLSNTYAALGKWNESGTVRKLMRNAGVKKAPGGSVIEINNIVYEFLAGDMSDSQVHEIY 520

Query: 615 YML 617
           ++L
Sbjct: 521 HVL 523



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 130/471 (27%), Positives = 235/471 (49%), Gaps = 30/471 (6%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LL  C+    + QIH  M+     ++    ++ + + +S     L+ +A  IF    + +
Sbjct: 30  LLSNCRHHLHLYQIHGFMLHRALDQDNLFLSQFIDACTS---LGLSSYAFSIF----SNK 82

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
              D  L+N  IK  S    P  A+ ++  +  +G+  D +S   VLKA  +L  +E G 
Sbjct: 83  THPDLRLYNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGR 142

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           QIH      A   D+ +   LI +Y  CG++  AR+LFD +G +D   +N+M+ GYVK G
Sbjct: 143 QIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVG 202

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLISWNS 255
            ++SAR++F+ MP  +RN+ISW +++ GYAQ     + A ++F KM     E D I+  +
Sbjct: 203 ELKSARKVFNEMP--QRNVISWTTLIAGYAQTNRPHE-AIELFRKMQLEEVEPDEIAMLA 259

Query: 256 MLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           +L  C   G ++  + + + + K    R V  +  +ID YAK G +  A  +F+ M ++ 
Sbjct: 260 VLSACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKS 319

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           V+  + ++     +G   +A+++F  M+ +  + P++ + V +LSA + +G +D G    
Sbjct: 320 VITWSTVIAALALHGLGGEAIDMFLRME-KAKVRPNEVTFVAILSACSHVGMVDVG---R 375

Query: 372 RYLEKDQ--FSLNGK--HGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAI 426
            Y ++ Q  + +  K  H   +ID+ ++ G ++ A K+   +  + +   W +++     
Sbjct: 376 YYFDQMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHDMPFEANAMIWGSLLAASNT 435

Query: 427 HGLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGLVKEGLLCFELMR 476
           H   ELA   L  + +L  EP +   +  L N  A  G   E     +LMR
Sbjct: 436 HRDAELAQLALKHLAKL--EPGNSGNYVLLSNTYAALGKWNESGTVRKLMR 484


>gi|357148182|ref|XP_003574661.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 553

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 191/523 (36%), Positives = 275/523 (52%), Gaps = 67/523 (12%)

Query: 154 LFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG-NIESARELFDSMP 212
           L   N  I+   R G +  AR++FD M  RD VS+N+++    ++G ++ +AR LFD MP
Sbjct: 7   LVRDNQRITALARAGDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARRLFDDMP 66

Query: 213 IRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQA 271
              RN+ISWNSV+ G   L  G L  A   F + P R++ SWN+ML G V+ G+MDDA A
Sbjct: 67  --SRNVISWNSVVAGC--LAHGDLDAASAYFARAPRRNVASWNAMLAGLVRLGRMDDAWA 122

Query: 272 LFDKMPKRDVVSWANMIDGYAKLGRV-------------------------------DIA 300
           LF +MP+R+VVS+  M+DG A+ G V                               D A
Sbjct: 123 LFGEMPQRNVVSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVENAMFDEA 182

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFD----------NMQCELYLH----- 345
           R+LF+ MP ++VVAC AM+ GY ++G    A  +FD          N     Y+H     
Sbjct: 183 RKLFEAMPDKNVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGHGE 242

Query: 346 ---------------PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI 390
                          PD A+L+ +L+A + L  + +G + H    K     +     AL+
Sbjct: 243 EAMKLHIIMFREGVKPDHATLIAILTACSALALLRQGRSTHAVATKTMLESSTSFCNALM 302

Query: 391 DMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
            MYSKCG++  +  VF  ++   +  WN +I   A HG  + A  L  EME   + P+DI
Sbjct: 303 TMYSKCGNVGESELVFMNLKIQDIVSWNTIIAAYAQHGKYQKAIALFHEMETRGLIPNDI 362

Query: 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIED 510
           T   +L+AC H G V + L  F+LM   + + P  +HY C+VDILGRAG +E A + I+ 
Sbjct: 363 TILSMLSACGHVGRVNDSLELFDLMSSKYAISPSAEHYACVVDILGRAGQLEKACSYIKK 422

Query: 511 MPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDA 570
           MP E    +W  LL A + + N+ +GE  AK L+  DS +S  YV+LSN++A  GMW + 
Sbjct: 423 MPFEAERNVWGALLGASKTHGNVQLGELAAKMLVQSDSVSSGPYVMLSNIYAAAGMWGEV 482

Query: 571 RRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
            RVR  MKE+ +KK PG SW E+   V+ F   D S  ++  I
Sbjct: 483 NRVRGQMKEKGVKKQPGYSWTEIANKVNMFVGGDASHPEMNKI 525



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 145/336 (43%), Gaps = 56/336 (16%)

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR-VDIARRL 303
           +  R L+  N  +    + G +  A+ +FD MP+RDVVSW  ++    + GR +  ARRL
Sbjct: 2   LATRLLVRDNQRITALARAGDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARRL 61

Query: 304 FDEMPKRDVVA-------C------------------------NAMMGGYVRNGYSMKAL 332
           FD+MP R+V++       C                        NAM+ G VR G    A 
Sbjct: 62  FDDMPSRNVISWNSVVAGCLAHGDLDAASAYFARAPRRNVASWNAMLAGLVRLGRMDDAW 121

Query: 333 EIFDNMQCE-----------LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF-- 379
            +F  M              L    + A    V  A+ +   +     I  Y+E   F  
Sbjct: 122 ALFGEMPQRNVVSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVENAMFDE 181

Query: 380 ------SLNGKHGV---ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
                 ++  K+ V   A+I  Y K G +E+A ++F+ I    V  WNAMI G   +G G
Sbjct: 182 ARKLFEAMPDKNVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGHG 241

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
           E A  L + M R  ++PD  T   +L AC+   L+++G     +  +   LE        
Sbjct: 242 EEAMKLHIIMFREGVKPDHATLIAILTACSALALLRQGRSTHAVATKT-MLESSTSFCNA 300

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           ++ +  + G++  +  +  ++ ++ + V W T+++A
Sbjct: 301 LMTMYSKCGNVGESELVFMNLKIQ-DIVSWNTIIAA 335



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 118/252 (46%), Gaps = 17/252 (6%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           KD   WNA+I  Y H    +EA+ +  +M   GV  D  +   +L ACS L L+ +G   
Sbjct: 223 KDVISWNAMITGYVHNGHGEEAMKLHIIMFREGVKPDHATLIAILTACSALALLRQGRST 282

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H +  K    S     N L+++Y +CG +  +  +F  + I+D VS+N++I  Y + G  
Sbjct: 283 HAVATKTMLESSTSFCNALMTMYSKCGNVGESELVFMNLKIQDIVSWNTIIAAYAQHGKY 342

Query: 202 ESARELFDSMPIRE--RNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
           + A  LF  M  R    N I+  S+L+    +   +  + ++F+ M  +  IS ++  + 
Sbjct: 343 QKAIALFHEMETRGLIPNDITILSMLSACGHVGR-VNDSLELFDLMSSKYAISPSAEHYA 401

Query: 260 CV-----KCGKMDDAQALFDKMP---KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           CV     + G+++ A +   KMP   +R+V  W  ++      G V +       + + D
Sbjct: 402 CVVDILGRAGQLEKACSYIKKMPFEAERNV--WGALLGASKTHGNVQLGELAAKMLVQSD 459

Query: 312 VVACNAMMGGYV 323
            V+     G YV
Sbjct: 460 SVSS----GPYV 467


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 203/624 (32%), Positives = 328/624 (52%), Gaps = 59/624 (9%)

Query: 12  NSTQSTLLLLRKCKTLNDVNQIHARMITTGFI--KNTHLTTKLVASFSSSPCTPLTEFAR 69
           ++ +  + L ++C +   + Q+H +M+    I   N HL +K +          L  F  
Sbjct: 22  HTAECLVFLAKQCSSTKTLQQVHTQMVVNSSIHTPNNHLLSKAIH---------LKNFPY 72

Query: 70  YIFFKYHAFREKKDPFLWNAIIKTYSHGL-DPKEALVMFCLMLDNGVSVDKFSASLVLKA 128
                 H      D + +N +I+  +    +   AL +F  M+   ++ D F+      +
Sbjct: 73  SSLLFSHIAPHPND-YAFNIMIRALTTTWHNYPLALSLFHRMMSLSLTPDNFTFPFFFLS 131

Query: 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY 188
           C+ L  +      H LL K+A  SD    + LI+ Y RC                     
Sbjct: 132 CANLASLSHACAAHSLLFKLALHSDPHTAHSLITAYARC--------------------- 170

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER 248
                     G + SAR++FD +P   R+ +SWNS++ GYA+     + A ++F +M  R
Sbjct: 171 ----------GLVASARKVFDEIP--HRDSVSWNSMIAGYAKAGCARE-AVEVFREMGRR 217

Query: 249 D-----LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV--SW--ANMIDGYAKLGRVDI 299
           D      +S  S+L  C + G ++  + +   + +R +   S+  + +I  YAK G ++ 
Sbjct: 218 DGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELES 277

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           ARR+FD M  RDV+  NA++ GY +NG + +A+ +F  M+ E  +  +  +L  VLSA A
Sbjct: 278 ARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMK-EDCVTANKITLTAVLSACA 336

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
            +G +D G  I  Y  +  F  +     ALIDMY+K GS++NA +VF+ +   +   WNA
Sbjct: 337 TIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNA 396

Query: 420 MINGLAIHGLGELAFDLLMEM--ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
           MI+ LA HG  + A  L   M  E     P+DITF GLL+AC HAGLV EG   F++M  
Sbjct: 397 MISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEGYRLFDMMST 456

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
           +  L P+++HY CMVD+L RAGH+  A +LI  MP +P+ V    LL ACR+ +N+++GE
Sbjct: 457 LFGLVPKIEHYSCMVDLLARAGHLYEAWDLIRKMPEKPDKVTLGALLGACRSKKNVDIGE 516

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVV 597
            V + ++ +D SNS +Y++ S ++A L MW D+ R+R +M+++ + K PGCSWIE+E  +
Sbjct: 517 RVMRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTPGCSWIEVENHL 576

Query: 598 HEFFVRDKSRLQVRDIYYMLDNMW 621
           HEF   D   L   D+  ++D ++
Sbjct: 577 HEFHAGDGLCLDSIDLSNIIDLLY 600


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 199/594 (33%), Positives = 320/594 (53%), Gaps = 47/594 (7%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF--FKYHAFREKKDPFLWNA 89
           Q+H   + T F  +  + T  +  +    C  L++ +  +F     H  +       +NA
Sbjct: 232 QLHGHALKTDFGTDVVIGTATLDMYMK--CNNLSDCSNQLFNSLPNHNLQS------YNA 283

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA 149
           II  Y+      EAL MF L+  +G+ +D+ S S   +AC+ +    EGLQ+HGL  K  
Sbjct: 284 IIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSL 343

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD 209
             S++ + N ++ +Y +CG L  A  +F++M  RD+VS+N++I  + ++GN E    LF 
Sbjct: 344 CQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFV 403

Query: 210 SMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC-----VKCG 264
            M                   L+SG+           E D  ++ S+L  C     + CG
Sbjct: 404 WM-------------------LQSGM-----------EPDEFTYGSVLKACAGWQALNCG 433

Query: 265 KMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVR 324
                + +  +M     V  A +ID Y+K G ++ A +L D + ++ VV+ NA++ G+  
Sbjct: 434 MEIHNRIIKSRMGLDSFVGIA-LIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSL 492

Query: 325 NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK 384
              S +A + F  M  E+ + PD+ +   +L   A L  ++ G  IH  + K +   +  
Sbjct: 493 QKQSEEAQKTFSKM-LEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAY 551

Query: 385 HGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS 444
               L+DMYSKCG++++   +FE+  +     WNAM+ G A HGLGE A  +   M+  +
Sbjct: 552 ISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLEN 611

Query: 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504
           ++P+  TF  +L AC H GLV++GL  F  M   + L+P+L+HY C+VDI+GR+G +  A
Sbjct: 612 VKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKA 671

Query: 505 RNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL 564
             LIE MP E + VIWRTLLS C+ + N+ V E  A  ++ ++  +S++YVLLSN++A  
Sbjct: 672 LELIEGMPFEADAVIWRTLLSXCKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANA 731

Query: 565 GMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           GMWN+  ++R MM+   LKK PGCSWIE++  VH F V DK+  + ++IY  LD
Sbjct: 732 GMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLD 785



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 162/570 (28%), Positives = 270/570 (47%), Gaps = 76/570 (13%)

Query: 25  KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDP 84
           K L    Q HARMI T F     +T  L+  +    C+ L  FA    FK      ++D 
Sbjct: 56  KALCPGKQAHARMILTEFKPTVFVTNCLIQMYIK--CSDLG-FA----FKVFDGMPQRDT 108

Query: 85  FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV---------------DKFSASLVLKAC 129
             WNA++  Y+   D   A  +F  M   G  V               D+ + ++VLK+C
Sbjct: 109 VSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSC 168

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRC--------GYLEFARQLFDKMG 181
           S L     G+QIHGL  K+ F  D+   + L+ +Y +C        G LE  +++  K G
Sbjct: 169 SSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEM-QKAG 227

Query: 182 I---------------RDSVSYNSMIDGYVKSGNI-ESARELFDSMPIRERNLISWNSVL 225
           +                D V   + +D Y+K  N+ + + +LF+S+P    NL S+N+++
Sbjct: 228 VGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLP--NHNLQSYNAII 285

Query: 226 NGYAQLKSGLQFAWQIFEKMPER----DLISWNSMLHGC-VKCGKMDDAQ--ALFDKMPK 278
            GYA+   G++ A  +F  + +     D +S +     C V  G ++  Q   L  K   
Sbjct: 286 VGYARSDKGIE-ALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLC 344

Query: 279 RDVVSWANMI-DGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
           +  +  AN I D Y K G +  A  +F+EM  RD V+ NA++  + +NG   K L +F  
Sbjct: 345 QSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVW 404

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
           M  +  + PD+ +   VL A A    ++ G+ IH  + K +  L+   G+ALIDMYSKCG
Sbjct: 405 M-LQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCG 463

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            +E A K+ +++ + +V  WNA+I+G ++    E A     +M  + ++PD+ T+  +L+
Sbjct: 464 MMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILD 523

Query: 458 ACAHAGLVKEGLLCFELMRRIHK--LEPELQH----YGCMVDILGRAGHIEAARNLIEDM 511
            CA+       L+  EL ++IH   ++ ELQ        +VD+  + G+++  + + E  
Sbjct: 524 TCAN-------LVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKA 576

Query: 512 PMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
           P   + V W  ++     Y    +GE   K
Sbjct: 577 P-NRDFVTWNAMVCG---YAQHGLGEEALK 602



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 133/545 (24%), Positives = 237/545 (43%), Gaps = 86/545 (15%)

Query: 119 KFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD 178
           K + S + + CS    +  G Q H  +    F   +F+ NCLI +Y++C  L FA ++FD
Sbjct: 42  KKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFD 101

Query: 179 KMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLI-----------------SW 221
            M  RD+VS+N+M+ GY   G+I  A++LFD+MP     ++                 ++
Sbjct: 102 GMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTF 161

Query: 222 NSVLNGYAQLK---SGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDD----AQALFD 274
             VL   + L+    G+Q      +   + D+++ +++L    KC   +D       LF 
Sbjct: 162 AVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFK 221

Query: 275 KMPK------------------RDVVSWANMIDGYAKLGRV-DIARRLFDEMPKRDVVAC 315
           +M K                   DVV     +D Y K   + D + +LF+ +P  ++ + 
Sbjct: 222 EMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSY 281

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           NA++ GY R+   ++AL +F  +Q +  L  D+ SL     A A +    +G+ +H    
Sbjct: 282 NAIIVGYARSDKGIEALGMFRLLQ-KSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSM 340

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           K     N     A++DMY KCG++  A  VFE++       WNA+I     +G  E    
Sbjct: 341 KSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLS 400

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG--CMVD 493
           L + M +  +EPD+ T+  +L ACA    +  G+   E+  RI K    L  +    ++D
Sbjct: 401 LFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGM---EIHNRIIKSRMGLDSFVGIALID 457

Query: 494 ILGRAGHIEAARNLIE----------------------------------DMPMEPNDVI 519
           +  + G +E A  L +                                  +M ++P++  
Sbjct: 458 MYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFT 517

Query: 520 WRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV--LLSNMFAGLGMWNDARRVRSMM 577
           + T+L  C N   + +G+ +   +I  +   S +Y+   L +M++  G   D + +    
Sbjct: 518 YATILDTCANLVTVELGKQIHAQIIKKE-LQSDAYISSTLVDMYSKCGNMQDFQLIFEKA 576

Query: 578 KERNL 582
             R+ 
Sbjct: 577 PNRDF 581



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 138/297 (46%), Gaps = 25/297 (8%)

Query: 20  LLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+ C   + LN   +IH R+I +    ++ +   L+  +S        E       K H
Sbjct: 420 VLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAE-------KLH 472

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
               ++    WNAII  +S     +EA   F  ML+ GV  D F+ + +L  C+ L  +E
Sbjct: 473 DRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVE 532

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G QIH  + K    SD ++ + L+ +Y +CG ++  + +F+K   RD V++N+M+ GY 
Sbjct: 533 LGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYA 592

Query: 197 KSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQL---KSGLQFAWQIFEKMPERDLI 251
           + G  E A ++F+ M +   + N  ++ +VL     +   + GL +    F  M     +
Sbjct: 593 QHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHY----FHSMLSNYGL 648

Query: 252 SWNSMLHGCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIARR 302
                 + CV     + G++  A  L + MP + D V W  ++      G V++A +
Sbjct: 649 DPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXCKIHGNVEVAEK 705


>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
 gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 179/504 (35%), Positives = 281/504 (55%), Gaps = 25/504 (4%)

Query: 86  LWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
           +WNA+I+ Y+     +E + MF  M   G+    F+   V+ +C  L     G ++H  +
Sbjct: 21  IWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYVINSCCELEWYGRGKRVHCEI 80

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
            K  F S   + N L ++Y++          FD               G   +  ++ AR
Sbjct: 81  VKSGFESSYAVANSLFNMYLK------MPASFDV--------------GLASNCKLDYAR 120

Query: 206 ELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGK 265
           ++FD M +R   L  WN ++  Y  +   ++ A ++F+ MPERD++SWNSM+ G  K GK
Sbjct: 121 KIFDDMCVRPVEL--WNQMIGKYVNI-GDVKSARELFDIMPERDIVSWNSMILGYAKGGK 177

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
           + +A+ LF+KMP+++V+SW +MI  YA    ++ AR  F+ MP+R+VV+ N+M+  Y ++
Sbjct: 178 VANARGLFEKMPEKNVISWTSMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAKH 237

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
           G  +++L +F  MQ E  + PD  + V VLSA + LG ++ G  IH YL  D        
Sbjct: 238 GKFVESLNLFVQMQSE-GVTPDGYTFVSVLSACSNLGDLEFGKYIH-YLSGDLSQSEVMV 295

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
           G AL +MY++CG ++ A  VF +I    V  WN +I  LA+HG  E A  + + M +  +
Sbjct: 296 GTALTEMYAQCGDVDKAFAVFIKIGKRDVFCWNVIIKALALHGRSEEAIKIFLLMRKTGL 355

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR 505
           +P+D TFT  L AC+H GLV+EG + F  M + +K+ P++ HYGC++D+L R G +E A 
Sbjct: 356 KPNDFTFTSALFACSHGGLVEEGHIIFNSMEKDYKIIPKITHYGCLIDMLCRNGQLEEAM 415

Query: 506 NLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565
            L+EDMP +P+  IW  LL  CR   +L + E V +    M+++ S  YVLLSN+ A  G
Sbjct: 416 LLVEDMPFQPDVAIWGALLGGCRVTGDLKLAEKVVEKATEMETNESGVYVLLSNIHASAG 475

Query: 566 MWNDARRVRSMMKERNLKKLPGCS 589
            W +A   R  M E+ + K  G S
Sbjct: 476 QWIEAADARKKMDEKKISKKTGSS 499



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 124/306 (40%), Gaps = 71/306 (23%)

Query: 241 IFEKM---PERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV---------------- 281
           IF +M      +++ WN+M+ G    G   +   +FD+MP+R +                
Sbjct: 7   IFSQMGHDSSAEIVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYVINSCCE 66

Query: 282 VSW----------------------------------ANMIDGYAKLGRVDIARRLFDEM 307
           + W                                  A+   G A   ++D AR++FD+M
Sbjct: 67  LEWYGRGKRVHCEIVKSGFESSYAVANSLFNMYLKMPASFDVGLASNCKLDYARKIFDDM 126

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
             R V   N M+G YV  G    A E+FD M         +  +V   S I  LG+   G
Sbjct: 127 CVRPVELWNQMIGKYVNIGDVKSARELFDIMP--------ERDIVSWNSMI--LGYAKGG 176

Query: 368 -VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
            VA  R L +     N     ++I  Y+    +E A   FE +   +V  WN+MI+  A 
Sbjct: 177 KVANARGLFEKMPEKNVISWTSMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAK 236

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           HG    + +L ++M+   + PD  TF  +L+AC++ G ++ G       + IH L  +L 
Sbjct: 237 HGKFVESLNLFVQMQSEGVTPDGYTFVSVLSACSNLGDLEFG-------KYIHYLSGDLS 289

Query: 487 HYGCMV 492
               MV
Sbjct: 290 QSEVMV 295



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 140/335 (41%), Gaps = 29/335 (8%)

Query: 266 MDDAQALFDKM---PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGY 322
           MD +  +F +M      ++V W  MI GYA  G      R+FDEMP+R +   N      
Sbjct: 1   MDYSNLIFSQMGHDSSAEIVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYV 60

Query: 323 VRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA----IAQLGHIDKGVAIH------R 372
           + +   ++       + CE+     ++S  +  S     +      D G+A +      R
Sbjct: 61  INSCCELEWYGRGKRVHCEIVKSGFESSYAVANSLFNMYLKMPASFDVGLASNCKLDYAR 120

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
            +  D      +    +I  Y   G +++A ++F+ + +  +  WN+MI G A  G    
Sbjct: 121 KIFDDMCVRPVELWNQMIGKYVNIGDVKSARELFDIMPERDIVSWNSMILGYAKGGKVAN 180

Query: 433 AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV 492
           A  L  +M     E + I++T ++ A A    ++     FE M      +  +  +  M+
Sbjct: 181 ARGLFEKMP----EKNVISWTSMIGAYADTDDLETARSFFETMP-----QRNVVSWNSMI 231

Query: 493 DILGRAGHIEAARNLIEDMPME---PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549
               + G    + NL   M  E   P+   + ++LSAC N  +L  G+ +  H +  D S
Sbjct: 232 SSYAKHGKFVESLNLFVQMQSEGVTPDGYTFVSVLSACSNLGDLEFGKYI--HYLSGDLS 289

Query: 550 NSSSYV--LLSNMFAGLGMWNDARRVRSMMKERNL 582
            S   V   L+ M+A  G  + A  V   + +R++
Sbjct: 290 QSEVMVGTALTEMYAQCGDVDKAFAVFIKIGKRDV 324



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 2/139 (1%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           K+D F WN IIK  +     +EA+ +F LM   G+  + F+ +  L ACS  GL+EEG  
Sbjct: 321 KRDVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLKPNDFTFTSALFACSHGGLVEEGHI 380

Query: 141 IHGLLRK-VAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS-YNSMIDGYVKS 198
           I   + K       +    CLI +  R G LE A  L + M  +  V+ + +++ G   +
Sbjct: 381 IFNSMEKDYKIIPKITHYGCLIDMLCRNGQLEEAMLLVEDMPFQPDVAIWGALLGGCRVT 440

Query: 199 GNIESARELFDSMPIRERN 217
           G+++ A ++ +     E N
Sbjct: 441 GDLKLAEKVVEKATEMETN 459


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 208/670 (31%), Positives = 339/670 (50%), Gaps = 83/670 (12%)

Query: 27  LNDVNQIHARMITTGFIKNT---HLTTKLVASFSSSP--CTPLTEF--------ARYIFF 73
           L  +  +HAR++T   + +    HLT +L+  ++ SP   TP   F        A  +  
Sbjct: 38  LRTLRCLHARLLTAALLHDPSHPHLTLRLLHLYTLSPDLATPAVLFRADPGPVAATSLVS 97

Query: 74  KYH---------AFRE-----KKDPFLWNAIIKTYSHGLDPKEALVMFCLML--DNGVSV 117
            Y          AF +     ++D  L NA+I  ++       A+ +F  +L  D+ +  
Sbjct: 98  AYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDSLRP 157

Query: 118 DKFSASLVLKACSRLG--LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRC---GYLEF 172
           D +S + +L A  ++    +    Q+H  + K+  G+ L + N LI+LY++C   G    
Sbjct: 158 DDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRD 217

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK 232
           AR++ D+M  +D +++ +++ G+V+ G++ +AR  F+   I     + WN++++GY Q  
Sbjct: 218 ARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEE--IDGEFDVVWNAMISGYVQ-- 273

Query: 233 SGL-QFAWQIFEKMPER----DLISWNSMLHGCV-------------------------- 261
           SG+   A+++F +M  +    D  ++ S+L  C                           
Sbjct: 274 SGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEA 333

Query: 262 -------------KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
                        K GK+  A  +FD M  +DVVSW  ++ GY + G +D A R+F EMP
Sbjct: 334 ALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMP 393

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            +  ++   M+ GYV  G +  AL++F+ M+ E  + P D +    ++A  +LG +  G 
Sbjct: 394 YKSELSWMVMVSGYVHGGLAEDALKLFNQMRSE-DVKPCDYTYAGAVAACGELGALKHGK 452

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            +H +L +  F  +   G AL+ MY++CG++++A  VF  + +     WNAMI+ L  HG
Sbjct: 453 QLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHG 512

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
            G  A +L  +M    I PD I+F  +L AC HAGLV +G   FE M R   + P   HY
Sbjct: 513 HGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHY 572

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
             ++D+LGRAG I  AR+LI+ MP EP   IW  +LS CR   ++ +G   A  L  M  
Sbjct: 573 ARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVP 632

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
            +  +Y+LLSN ++  G W DA RVR +M++R +KK PGCSWIE+   VH F V D    
Sbjct: 633 EHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDTKHP 692

Query: 609 QVRDIYYMLD 618
              ++Y  L+
Sbjct: 693 DAHEVYRFLE 702


>gi|414587316|tpg|DAA37887.1| TPA: hypothetical protein ZEAMMB73_488455 [Zea mays]
          Length = 622

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 191/589 (32%), Positives = 307/589 (52%), Gaps = 43/589 (7%)

Query: 2   FVSANYNQPCNSTQSTLL--LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSS 59
             S + N    S  S  L  LL +C T+  + Q+HAR+I  G   +  L  +   +  + 
Sbjct: 68  LASPSRNAAAASRPSVALATLLGRCCTVRCLAQLHARIILLGLHNHHALLARFTTACDAL 127

Query: 60  PCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDK 119
            C  +           HA   +    L NA++ + +       AL  F L+    +  D 
Sbjct: 128 ECPSVAASFIAALTDSHAAPLR----LRNAVLASLARHAPLHAALTEFNLLRQAALP-DS 182

Query: 120 FSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK 179
           FS   +L+AC+R+  +  G  +H    ++   +DLF++  LI  Y RCG  + AR LF +
Sbjct: 183 FSFPCLLRACARVSCLPAGRALHAAAIRLGVHADLFIRTALIQFYGRCGVADAARALFYQ 242

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAW 239
           + I   VS+ ++I  YV +G I  AR                                  
Sbjct: 243 IDIPSEVSWTAIIVAYVNNGGIIDARA--------------------------------- 269

Query: 240 QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDI 299
            +F+ MP+R+++ WN M+ G VKCG ++ A+ LFD+MP+R   +  ++I GYAK G ++ 
Sbjct: 270 -LFDTMPQRNVVHWNVMVDGYVKCGDLEGARRLFDEMPERTATACTSLIGGYAKAGNMEA 328

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           AR LFD++  RDV + +AM+ GY +NGY  +AL  FD  Q +  +HPD+  +V ++SA +
Sbjct: 329 ARLLFDKLEDRDVFSWSAMISGYAQNGYPGEALRTFDEFQGQ-GIHPDELVVVGLMSACS 387

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVA-LIDMYSKCGSIENAIKVFEQIEDGSVDHWN 418
           QLG+I     I  Y+ K    +N  H +A L++M +KCG++E A  +FE +    V  + 
Sbjct: 388 QLGNIRLASWIEDYITKYSIDMNNAHVLAGLVNMNAKCGNLERATFLFESMPVRDVFSYC 447

Query: 419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRI 478
           +++ G  +HG  + A  L   M    + PD+  FT +L AC HAGLV+EG   F++M+ +
Sbjct: 448 SLMQGYCLHGSADKAVKLFSRMLLEGLTPDNAVFTIVLTACCHAGLVEEGKKFFDIMKNV 507

Query: 479 HKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEP 538
           + + P  +HY C+V++LGR G +E A  LI  MP +P+   W  LL  C+ + N+ +G+ 
Sbjct: 508 YLMVPSGEHYACLVNLLGRCGMLEDAYWLIMSMPGKPHPGAWGALLGGCKLHCNIELGKI 567

Query: 539 VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPG 587
            AK L  ++  N+ +YV LSNM+A +  W D   VR+ M  + + K+ G
Sbjct: 568 AAKKLFEIEPDNAGNYVSLSNMYANIDRWGDVSEVRAEMTGKRITKIAG 616


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 191/532 (35%), Positives = 298/532 (56%), Gaps = 17/532 (3%)

Query: 101 KEALVMFCLMLDNGVSVDKFSASLVLKACSRL----GLIEEGLQIHGLLRKVAFGSDLFL 156
           ++A+  +  ML  G   D ++   +LKA +R     G       +H  + ++  G +  +
Sbjct: 1   EDAVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHV 60

Query: 157 QNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN--------IESARELF 208
            + L++ Y   G    AR L  +      V++N++I G+ + G         ++ AR   
Sbjct: 61  ASSLVAAYTAGGDGAAARALVGECDT--PVAWNALISGHNRGGRFGESCGSFVDMARAGA 118

Query: 209 DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDD 268
              P+   +++S  +   G   +  G+Q   ++       DL   N+++    +C  M  
Sbjct: 119 APTPVTYVSVLS--ACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGS 176

Query: 269 AQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYS 328
           A  +FD M  R VVSW +++ G A+LG+VD AR LFD MP+RD V+  AM+ GYV     
Sbjct: 177 AWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARF 236

Query: 329 MKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVA 388
            +ALE+F  MQ    +  D+ ++V V++A AQLG ++ G  +  Y+ +    ++   G A
Sbjct: 237 REALEMFREMQYS-NVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNA 295

Query: 389 LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD 448
           LIDMYSKCGSIE A+ VF+ +       W A+I GLA++G  E A ++   M R+S  PD
Sbjct: 296 LIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPD 355

Query: 449 DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLI 508
           ++TF G+L AC HAGLV +G   F  M   + + P + HYGC++D+LGRAG I  A + I
Sbjct: 356 EVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTI 415

Query: 509 EDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWN 568
           + MPM PN  IW TLL+ACR + N  +GE VA+ L+ +D  NS  Y+LLSN++A    W 
Sbjct: 416 DQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENSMVYILLSNIYAKCNRWE 475

Query: 569 DARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           D RR+R  + E+ +KK PGCS IE++G++HEF   D+S    ++IY  L+++
Sbjct: 476 DVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQSHPMSKEIYSKLESI 527



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 109/422 (25%), Positives = 199/422 (47%), Gaps = 25/422 (5%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           +HA ++  G  +N H+ + LVA++++                     E   P  WNA+I 
Sbjct: 45  VHAHVVRLGMGRNAHVASSLVAAYTAGGDGAAARA---------LVGECDTPVAWNALIS 95

Query: 93  TYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL-IEEGLQIHGLLRKVAFG 151
            ++ G    E+   F  M   G +    +   VL AC +    +  G+Q+HG +      
Sbjct: 96  GHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVL 155

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
            DL ++N L+ +Y  C  +  A ++FD M +R  VS+ S++ G  + G ++ AR+LFD M
Sbjct: 156 PDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRM 215

Query: 212 PIRERNLISWNSVLNGY---AQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDD 268
           P  ER+ +SW ++++GY   A+ +  L+   ++       D  +  S++  C + G ++ 
Sbjct: 216 P--ERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEM 273

Query: 269 AQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVR 324
            + +   M ++    D      +ID Y+K G ++ A  +F  M  RD     A++ G   
Sbjct: 274 GEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAV 333

Query: 325 NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH-RYLEKDQFSLNG 383
           NGY  +A+E+F  M   +   PD+ + + VL+A    G +DKG       +E    + N 
Sbjct: 334 NGYEEEAIEMFHRM-IRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNV 392

Query: 384 KHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHG---LGELAFDLLME 439
            H   +ID+  + G I  A+   +Q+    +   W  ++    +HG   +GEL  + L+E
Sbjct: 393 VHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLE 452

Query: 440 ME 441
           ++
Sbjct: 453 LD 454



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 118/250 (47%), Gaps = 23/250 (9%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   W A+I  Y      +EAL MF  M  + VS D+F+   V+ AC++LG +E G  
Sbjct: 217 ERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEW 276

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +   + +     D F+ N LI +Y +CG +E A  +F  M  RD  ++ ++I G   +G 
Sbjct: 277 VRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGY 336

Query: 201 IESARELFDSMPIR------ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN 254
            E A E+F  M IR      E   I   +       +  G +F    F  M E   I+ N
Sbjct: 337 EEEAIEMFHRM-IRVSETPDEVTFIGVLTACTHAGLVDKGREF----FLSMIEAYNIAPN 391

Query: 255 SMLHGCV-----KCGKMDDAQALFDKMP-KRDVVSWANM-----IDGYAKLGRVDIARRL 303
            + +GC+     + GK+ +A    D+MP   +   W  +     + G +++G + +A RL
Sbjct: 392 VVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGEL-VAERL 450

Query: 304 FDEMPKRDVV 313
            +  P+  +V
Sbjct: 451 LELDPENSMV 460


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 185/614 (30%), Positives = 328/614 (53%), Gaps = 77/614 (12%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D   W ++I   +     K+A  +F  M + GV  DK +   +L+AC+    +E+G ++
Sbjct: 275 RDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKV 334

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H  +++V + +++++   ++S+Y +CG +E A ++FD +  R+ VS+ +MI G+ + G I
Sbjct: 335 HARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRI 394

Query: 202 ESARELFDSMPIR--ERNLISWNSVLNGYAQ---LKSGLQF------------------- 237
           + A   F+ M     E N +++ S+L   +    LK G Q                    
Sbjct: 395 DEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTAL 454

Query: 238 ------------AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV--- 282
                       A ++FEK+ ++++++WN+M+   V+  + D+A A F  + K  +    
Sbjct: 455 LSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNS 514

Query: 283 -------------------SWAN-----------------MIDGYAKLGRVDIARRLFDE 306
                               W +                 ++  +   G +  A+ LF++
Sbjct: 515 STFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFND 574

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           MPKRD+V+ N ++ G+V++G +  A + F  MQ E  + PD  +   +L+A A    + +
Sbjct: 575 MPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQ-ESGIKPDKITFTGLLNACASPEALTE 633

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G  +H  + +  F  +   G  LI MY+KCGSIE+A +VF ++   +V  W +MI G A 
Sbjct: 634 GRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQ 693

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           HG G+ A +L  +M++  ++PD ITF G L+ACAHAGL++EGL  F+ M+  + +EP ++
Sbjct: 694 HGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFN-IEPRME 752

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HYGCMVD+ GRAG +  A   I  M +EP+  +W  LL AC+ + N+ + E  A+  + +
Sbjct: 753 HYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLEL 812

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           D +++  +V+LSN++A  GMW +  ++R +M +R + K PG SWIE++G VH F+  DK+
Sbjct: 813 DPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKT 872

Query: 607 RLQVRDIYYMLDNM 620
             Q  +I+  L+ +
Sbjct: 873 HPQTEEIHAELERL 886



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 131/523 (25%), Positives = 234/523 (44%), Gaps = 76/523 (14%)

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
           F + KD    NA++   S      EA+ +   +  + + + + + S +L+ C +   + +
Sbjct: 69  FADIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGD 128

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G +I+  ++K     D+F++N LI++Y +CG    A+Q+FD M  +D  S+N ++ GYV+
Sbjct: 129 GERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQ 188

Query: 198 SGNIESARELF-----DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLIS 252
            G  E A +L      DS+   +R  +S  +       +  G +    I +   + DL  
Sbjct: 189 HGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFV 248

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
             ++++  +KCG + DA  +FD +P RD+V+W +MI G A+ GR   A  LF  M +  V
Sbjct: 249 GTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGV 308

Query: 313 V-----------ACN----------------------------AMMGGYVRNGYSMKALE 333
                       ACN                            A++  Y + G    ALE
Sbjct: 309 QPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALE 368

Query: 334 IFD------------------------------NMQCELYLHPDDASLVIVLSAIAQLGH 363
           +FD                              N   E  + P+  + + +L A +    
Sbjct: 369 VFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSA 428

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           + +G  I  ++ +  +  + +   AL+ MY+KCGS+++A +VFE+I   +V  WNAMI  
Sbjct: 429 LKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITA 488

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
              H   + A      + +  I+P+  TFT +LN C  +  ++ G     L+ +   LE 
Sbjct: 489 YVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKA-GLES 547

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           +L     +V +    G + +A+NL  DMP + + V W T+++ 
Sbjct: 548 DLHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAG 589



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 126/447 (28%), Positives = 211/447 (47%), Gaps = 54/447 (12%)

Query: 31  NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAI 90
            QI   +I  G+  +  + T L++ ++   C  L + A  +F K      K++   WNA+
Sbjct: 433 QQIQDHIIEAGYGSDDRVRTALLSMYAK--CGSLKD-AHRVFEKI----SKQNVVAWNAM 485

Query: 91  IKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAF 150
           I  Y        AL  F  +L  G+  +  + + +L  C     +E G  +H L+ K   
Sbjct: 486 ITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGL 545

Query: 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDS 210
            SDL + N L+S++V CG L  A+ LF+ M  RD VS+N++I G+V+ G  + A + F  
Sbjct: 546 ESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKM 605

Query: 211 MPIR--ERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGK 265
           M     + + I++  +LN  A    L  G +    I E   + D++    ++    KCG 
Sbjct: 606 MQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGS 665

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
           ++DA  +F K+PK++V SW +MI GYA+ GR                             
Sbjct: 666 IEDAHQVFHKLPKKNVYSWTSMIAGYAQHGR----------------------------- 696

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK- 384
               +ALE+F  MQ E  + PD  + V  LSA A  G I++G  +H +    +F++  + 
Sbjct: 697 --GKEALELFYQMQQE-GVKPDWITFVGALSACAHAGLIEEG--LHHFQSMKEFNIEPRM 751

Query: 385 -HGVALIDMYSKCGSIENAIK--VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEME 441
            H   ++D++ + G +  A++  +  Q+E  S   W A++    +H   ELA       +
Sbjct: 752 EHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDS-RVWGALLGACQVHLNVELAEK--AAQK 808

Query: 442 RLSIEPDDI-TFTGLLNACAHAGLVKE 467
           +L ++P+D   F  L N  A AG+ KE
Sbjct: 809 KLELDPNDNGVFVILSNIYAAAGMWKE 835



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 108/449 (24%), Positives = 194/449 (43%), Gaps = 70/449 (15%)

Query: 9   QPCNSTQSTLL-LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF 67
           +P +ST +++L + +   +L     +H  ++  G   + H++  LV+ F +  C  L   
Sbjct: 511 KPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVN--CGDLMS- 567

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           A+ +F        K+D   WN II  +      + A   F +M ++G+  DK + + +L 
Sbjct: 568 AKNLFNDM----PKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLN 623

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           AC+    + EG ++H L+ + AF  D+ +   LIS+Y +CG +E A Q+F K+  ++  S
Sbjct: 624 ACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYS 683

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
           + SMI GY + G  + A ELF                   Y   + G++  W        
Sbjct: 684 WTSMIAGYAQHGRGKEALELF-------------------YQMQQEGVKPDW-------- 716

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS----WANMIDGYAKLGRVDIARRL 303
              I++   L  C   G +++    F  M + ++      +  M+D + + G ++ A   
Sbjct: 717 ---ITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEF 773

Query: 304 FDEMP-KRDVVACNAMMGG---YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
             +M  + D     A++G    ++    + KA       Q +L L P+D  + ++LS I 
Sbjct: 774 IIKMQVEPDSRVWGALLGACQVHLNVELAEKA------AQKKLELDPNDNGVFVILSNIY 827

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
               + K VA  R +  D+  +  K G + I++  K  +  +  K   Q E+        
Sbjct: 828 AAAGMWKEVAKMRKVMLDR-GVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEE-------- 878

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPD 448
                 IH   E    L MEM +L   PD
Sbjct: 879 ------IHAELE---RLHMEMRQLGYVPD 898


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 213/685 (31%), Positives = 345/685 (50%), Gaps = 94/685 (13%)

Query: 20  LLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCT-PLTEFARYIFFKY 75
           LL+ C+T  + +    IHA  +  G + +T+L   L+A ++S   +      AR +F   
Sbjct: 215 LLQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDI 274

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLD----------------------- 112
              R  ++ F WN+++  Y+      +A V+F  M D                       
Sbjct: 275 PYAR--RNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAV 332

Query: 113 --------NGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLY 164
                    G +  +F+ + VL +C+ +     G ++H  + K+   S + + N ++ +Y
Sbjct: 333 KTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMY 392

Query: 165 VRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSV 224
            +CG  E AR +F++M +R   S+N M+  Y   G +E A  +F++M   ER+++SWN++
Sbjct: 393 GKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMV--ERSIVSWNTI 450

Query: 225 LNGYAQLKSGLQ-FAWQIFEKM-----PERDLISWNSMLHGCV----------------- 261
           + GY Q  +GL   A + F +M      E D  +  S+L  C                  
Sbjct: 451 IAGYNQ--NGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILR 508

Query: 262 ------------------KCGKMDDAQALFDKMPKRD--VVSWANMIDGYAKLGRVDIAR 301
                             K G ++ A+ + D+    D  V+S+  +++GY KLG    AR
Sbjct: 509 TGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAR 568

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
            +FD M  RDV+A  AM+ GY +NG + +A+E+F +M   +   P+  +L  VLSA A L
Sbjct: 569 EIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMIL-IGPEPNSHTLAAVLSACASL 627

Query: 362 GHIDKGVAIH----RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI-EDGSVDH 416
            ++D G  IH    R L++   S++     A+I +Y++ GS+  A +VF+QI        
Sbjct: 628 AYLDYGKQIHCKAIRSLQEQSVSVSN----AIITVYARSGSVPLARRVFDQICWRKETIT 683

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           W +MI  +A HGLGE A  L  EM R+ ++PD IT+ G+L+ACAHAG V +G   +E M+
Sbjct: 684 WTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQ 743

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
             H + P++ HY CMVD+  RAG +  A   I+ MP+ P+ V+W +LL+ACR  +N ++ 
Sbjct: 744 NEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLA 803

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
           E  A  L+ +D  NS +Y  L+N+++  G WNDA R+  + K++ +KK  G SW  + G 
Sbjct: 804 ELAAGKLLSIDPHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGK 863

Query: 597 VHEFFVRDKSRLQVRDIYYMLDNMW 621
           VH F   D    Q   IY     MW
Sbjct: 864 VHVFGADDVLHPQRDSIYRKAAEMW 888


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 206/683 (30%), Positives = 325/683 (47%), Gaps = 110/683 (16%)

Query: 27  LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFL 86
           LN+  Q+H   I T    +  +    + S+SS+                H+F        
Sbjct: 56  LNETQQLHGHFIKTSSNCSYRVPLAALESYSSNAAI-------------HSF-------- 94

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
              +I +Y     P +A  ++  M      VD F    VLKAC  +     G ++HG + 
Sbjct: 95  ---LITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVV 151

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           K  F  D+F+ N LI +Y   G L  AR LFDK+  +D VS+++MI  Y +SG ++ A +
Sbjct: 152 KNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALD 211

Query: 207 LFDSMPI-----RERNLISWNSVLNGYAQLKSG--------------------------- 234
           L   M +      E  +IS   VL   A LK G                           
Sbjct: 212 LLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDM 271

Query: 235 ------LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM------PKR--- 279
                 L +A ++F+ + +  +ISW +M+   + C  +++   LF KM      P     
Sbjct: 272 YVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITM 331

Query: 280 ------------------------------DVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
                                          +V     ID Y K G V  AR +FD    
Sbjct: 332 LSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKS 391

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           +D++  +AM+  Y +N    +A +IF +M     + P++ ++V +L   A+ G ++ G  
Sbjct: 392 KDLMMWSAMISSYAQNNCIDEAFDIFVHMT-GCGIRPNERTMVSLLMICAKAGSLEMGKW 450

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
           IH Y++K     +     + +DMY+ CG I+ A ++F +  D  +  WNAMI+G A+HG 
Sbjct: 451 IHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGH 510

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
           GE A +L  EME L + P+DITF G L+AC+H+GL++EG   F  M       P+++HYG
Sbjct: 511 GEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYG 570

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549
           CMVD+LGRAG ++ A  LI+ MPM PN  ++ + L+AC+ ++N+ +GE  AK  + ++  
Sbjct: 571 CMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPH 630

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQ 609
            S   VL+SN++A    W D   +R  MK+  + K PG S IE+ G++HEF + D+    
Sbjct: 631 KSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPD 690

Query: 610 VRDIYYMLDNM--------WTPD 624
            + +Y M+D M        +TPD
Sbjct: 691 AKKVYEMIDEMREKLEDAGYTPD 713



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 133/309 (43%), Gaps = 49/309 (15%)

Query: 16  STLLLLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           + L L+++C T   +     +HA  +  GF  +  L T  +  +    C  +   AR +F
Sbjct: 330 TMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGK--CGDVRS-ARSVF 386

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL 132
             +    + KD  +W+A+I +Y+      EA  +F  M   G+  ++ +   +L  C++ 
Sbjct: 387 DSF----KSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKA 442

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
           G +E G  IH  + K     D+ L+   + +Y  CG ++ A +LF +   RD   +N+MI
Sbjct: 443 GSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMI 502

Query: 193 DGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLIS 252
            G+   G+ E+A ELF+ M   E   ++ N                            I+
Sbjct: 503 SGFAMHGHGEAALELFEEM---EALGVTPND---------------------------IT 532

Query: 253 WNSMLHGCVKCGKMDDAQALFDKM-------PKRDVVSWANMIDGYAKLGRVDIARRLFD 305
           +   LH C   G + + + LF KM       PK  V  +  M+D   + G +D A  L  
Sbjct: 533 FIGALHACSHSGLLQEGKRLFHKMVHEFGFTPK--VEHYGCMVDLLGRAGLLDEAHELIK 590

Query: 306 EMPKRDVVA 314
            MP R  +A
Sbjct: 591 SMPMRPNIA 599


>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
 gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
          Length = 650

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 202/644 (31%), Positives = 333/644 (51%), Gaps = 81/644 (12%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L +C++   + +IHA+ + +G + + +  ++L+   +S+    L    + +      FR 
Sbjct: 11  LSRCRSARHLLEIHAQFLASGLLADAYAASRLLLFTTSATAARL--LPQPLHHSLQLFRL 68

Query: 81  KKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
            + P  F  N +I+       P    + F L      + D ++  L+  AC+  G   EG
Sbjct: 69  VRSPNAFTCNTLIRAALRQGLPH---LCFPLYASMPAAPDTYTHPLLAAACAARGDAREG 125

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
            Q+H    K  FG +L+L+N L+ +Y  CG +  AR++FD   + D+VS+N+++  YV+ 
Sbjct: 126 RQVHSHAVKHGFGDNLYLRNALMHMYSACGCVAGARRVFDAGPVWDAVSWNTILATYVRD 185

Query: 199 GNI-------------------------------ESARELFDSMPIRERNLISWNSVLNG 227
           G++                               E AR +FD      R+  +W ++++ 
Sbjct: 186 GDVEQAVGVFARMPERSAAAVSSMVALFARTGMVEEARGVFDGA--EHRDAFTWTAMISC 243

Query: 228 Y----------AQLKSGLQFAWQIFEKM--------PERDLISWNSMLHGCV-------- 261
           +          A      +  W + E +         + ++I    + HG V        
Sbjct: 244 FERNDLFVEALAVFSDMREEGWPVDEAVMVSVVAACAKSEVIQNGEVCHGLVVRAGLGSR 303

Query: 262 ------------KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
                        C  +  A+ LFD     D  SW +MI GY K GRV+ A+ LF+ MP 
Sbjct: 304 VNVQNALIHMYSSCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPD 363

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           +D V+ +AM+ G V+N  S +AL +FDNM+    + PD+ +LV V+SA   L  +++G  
Sbjct: 364 KDNVSWSAMIAGCVQNNQSSEALTVFDNMRAH-EIKPDEVTLVSVISACTNLCALEQGKL 422

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
           +H Y+ + Q+++    G +LIDMY KCG +E A++VF+ +E+     WNA+I GLA++GL
Sbjct: 423 VHEYIRQYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMVEEKGTPCWNAVIVGLAMNGL 482

Query: 430 GELAFDLLMEMERLSIE-PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
              + D+  EME   I  P +ITFTG+L+AC H GLV+EG   F+LM+  +++ P ++HY
Sbjct: 483 VTRSLDMFSEMETSGIAVPSEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIIPNIRHY 542

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
           GCMVD+LGRAG++  A +LI+ MPM P+   W  LL AC  + +  VGE V K L+ +D 
Sbjct: 543 GCMVDLLGRAGYVREAEDLIQSMPMSPDVPAWGALLGACWKHSDSEVGERVGKKLVKLDP 602

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
            +     +LSN++A  GMW   + +R  MK+ ++ K+ GCS +E
Sbjct: 603 HHDGFQTMLSNIYASEGMWQCVKDLRGSMKQ-HVAKVAGCSVVE 645


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 193/533 (36%), Positives = 301/533 (56%), Gaps = 20/533 (3%)

Query: 104 LVMFCLMLDNGVSVDKFSASLVLKACS---RLGLIEEGLQIHGLLRKVAFGSDL--FLQN 158
           L ++  ML  G   D ++   +LKA +     G + + +  H     V FG +L   + +
Sbjct: 3   LRVYVGMLARGARPDAYTFPPLLKAVTAAAERGAVGDAVHAH----VVKFGMELNAHVAS 58

Query: 159 CLISLYVRCGYLEFARQLFDKMGIRDS---VSYNSMIDGYVKSGNIESARELFDSMPIRE 215
            L+ +Y   G    AR L D    R     V +N++I G+ +S     +   F  M +R 
Sbjct: 59  SLVLMYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDM-VRT 117

Query: 216 RNL---ISWNSVLNGYAQLKS---GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDA 269
             +   +++ +VL+   + K    G+Q    +       DL   N+++    +C +MD A
Sbjct: 118 GVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAA 177

Query: 270 QALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSM 329
             LF+ M  R+ VSW ++I G+ +LG+VD AR LFD MP+RD V+  AM+ GYV+ G   
Sbjct: 178 WELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFR 237

Query: 330 KALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVAL 389
           +ALE+F  MQ    +  D+ ++V V++A AQLG ++ G     Y+ +    ++   G AL
Sbjct: 238 EALEMFREMQFS-KVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFVGNAL 296

Query: 390 IDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD 449
           +DMYSKCGSI+ A+ VF+++       W A+I GLA++G GE A ++   M R+   PD+
Sbjct: 297 VDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDE 356

Query: 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE 509
           +TF G+L AC HAGLV +G   F  M   + + P + H+GC++D+LGRAG ++ A   I 
Sbjct: 357 VTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIG 416

Query: 510 DMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWND 569
           +MPM PN  IW TLL+ACR + N  +G+  A+HL+ +D+ N   Y+LLSN++A    W D
Sbjct: 417 NMPMRPNSAIWGTLLAACRVHGNSEIGQLAAEHLLELDTENGMVYILLSNLYAKSNRWED 476

Query: 570 ARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWT 622
            RR+R ++ E+ +KK PGCS IE+ G +HEF   D+S    ++IY  LD + T
Sbjct: 477 VRRLRQVIMEKGIKKEPGCSLIEMNGTIHEFIAGDRSHPMSKEIYSKLDKVLT 529



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 115/432 (26%), Positives = 210/432 (48%), Gaps = 37/432 (8%)

Query: 31  NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAI 90
           + +HA ++  G   N H+ + LV  +++     +   AR +   + A R    P +WNA+
Sbjct: 39  DAVHAHVVKFGMELNAHVASSLVLMYAARGDGAV---ARTLLDAWPA-RGGDTPVVWNAL 94

Query: 91  IKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAF 150
           I  +      + +   F  M+  GV     +   VL AC +   I  G+Q+H  +     
Sbjct: 95  ISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGV 154

Query: 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDS 210
             DL + N LI +Y  C  ++ A +LF+ M +R++VS+ S+I G+++ G ++ AR LFD 
Sbjct: 155 LPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDC 214

Query: 211 MPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLISWNSMLHGCVKCGKM 266
           MP  ER+ +SW ++++GY Q     + A ++F +M       D  +  S++  C + G +
Sbjct: 215 MP--ERDTVSWTAMIDGYVQAGQ-FREALEMFREMQFSKVRADEFTMVSVVTACAQLGAL 271

Query: 267 DDAQALFDKMP----KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGY 322
           +  +     M     K D      ++D Y+K G +  A  +F EM  RD     A++ G 
Sbjct: 272 ETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGL 331

Query: 323 VRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF-SL 381
             NG+  +A+ +F  M   ++  PD+ + + VL+A    G +DKG        +D F S+
Sbjct: 332 AVNGHGEEAINMFYRM-LRVFEAPDEVTFIGVLTACTHAGLVDKG--------RDFFLSM 382

Query: 382 NGKHGVA--------LIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHG---L 429
            G +G+A        LID+  + G ++ A++    +    +   W  ++    +HG   +
Sbjct: 383 TGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPMRPNSAIWGTLLAACRVHGNSEI 442

Query: 430 GELAFDLLMEME 441
           G+LA + L+E++
Sbjct: 443 GQLAAEHLLELD 454


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 176/462 (38%), Positives = 272/462 (58%), Gaps = 6/462 (1%)

Query: 164 YVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISW 221
           Y   G L+++  LF +        + ++I G+   G  E A   +  M  +  E N  ++
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78

Query: 222 NSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV 281
           +S+L     ++ G     Q  +   + DL     +L    + G +  AQ LFD MP++ +
Sbjct: 79  SSILK-LCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSL 137

Query: 282 VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
           VS   M+  YAK G +D AR LFD M +RD V  N M+ GY +NG   +AL +F  M  +
Sbjct: 138 VSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM-LK 196

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIEN 401
               P++ +++ VLSA  QLG ++ G  +H Y+E +    N   G AL+DMYSKCGS+E+
Sbjct: 197 AKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLED 256

Query: 402 AIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461
           A  VF++I+D  V  WN+MI G A+ G  + A  L   M R+ + P +ITF G+L+AC H
Sbjct: 257 ARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGH 316

Query: 462 AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWR 521
           +G V EG   F  M+  + +EP+++HYGCMV++LGRAGH+E A  L+++M +EP+ V+W 
Sbjct: 317 SGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWG 376

Query: 522 TLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581
           TLL ACR +  + +GE + + L+  + +NS +Y+LLSN++A +G W+   R+R+MMK+  
Sbjct: 377 TLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSG 436

Query: 582 LKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD--NMW 621
           +KK PGCS IE+   VHEF     +  + ++IY ML+  N W
Sbjct: 437 VKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGW 478



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 118/407 (28%), Positives = 202/407 (49%), Gaps = 49/407 (12%)

Query: 78  FREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
           F   ++P  F W AII  ++     ++AL  +  ML  GV  + F+ S +LK C     I
Sbjct: 32  FGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----I 87

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
           E G  +H    K+ F SDL+++  L+ +Y R G +  A+QLFD M  +  VS  +M+  Y
Sbjct: 88  EPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCY 147

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLIS 252
            K G +++AR LFD M   ER+ + WN +++GY Q       L    ++ +   + + ++
Sbjct: 148 AKHGELDAARVLFDGM--EERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVT 205

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMP 308
             S+L  C + G ++  + +   +       +V     ++D Y+K G ++ AR +FD++ 
Sbjct: 206 VLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKID 265

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            +DVVA N+M+ GY   G+S +AL++F +M C + LHP + + + +LSA    G + +G 
Sbjct: 266 DKDVVAWNSMIVGYAMXGFSQEALQLFKSM-CRMGLHPTNITFIGILSACGHSGWVTEGW 324

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            I   + KD++ +  K                             ++H+  M+N L   G
Sbjct: 325 DIFNKM-KDEYGIEPK-----------------------------IEHYGCMVNLLGRAG 354

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
             E A++L+  M   +IEPD + +  LL AC   G +  G    EL+
Sbjct: 355 HVEQAYELVKNM---NIEPDPVLWGTLLGACRLHGKIALGEKIVELL 398


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  325 bits (832), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 167/446 (37%), Positives = 259/446 (58%), Gaps = 2/446 (0%)

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK 232
           AR LFD++   D+VSYN+++  +  +G++  AR+LF +MP   RN+ SWN++L+G ++  
Sbjct: 70  ARHLFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLSR-S 128

Query: 233 SGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP-KRDVVSWANMIDGY 291
             +  A  +F  MP R+ ISWN+M+      G M  A+  F+  P K + V W  M+ GY
Sbjct: 129 GAVGEARAVFLAMPARNSISWNAMVSCFAHAGDMCAAEECFEDAPDKENAVLWTAMVSGY 188

Query: 292 AKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASL 351
              G V+ A + F+ MP R +V+ NA++ GYV+N  +  AL +F  M  +  + P++++L
Sbjct: 189 MDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTL 248

Query: 352 VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED 411
             VL   + L  +  G  +H++  K   S     G +L+ MY KCG ++ A K+F ++  
Sbjct: 249 SSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRI 308

Query: 412 GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC 471
             V  WNAMI+G A HG G  A +L  +M+   +EP+ ITF  +L AC H G+   G+ C
Sbjct: 309 RDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQC 368

Query: 472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYE 531
           FE M+ ++ +E  + HY CMVD+L RAG +E A +LI  MP +P+   + TLL+A R Y+
Sbjct: 369 FERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSAYGTLLNASRVYK 428

Query: 532 NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           N+   E  A  LI  +  N+ +YV L+N++A    W D  RVR  MK+  + K PG SW+
Sbjct: 429 NMEFAEFAAGKLIEQNPQNAGAYVQLANIYAVANQWADVSRVRRWMKDNAVVKTPGYSWV 488

Query: 592 ELEGVVHEFFVRDKSRLQVRDIYYML 617
           E+ GV+H F   D+   Q+  I+  L
Sbjct: 489 EINGVIHVFRSNDRLHPQLSLIHERL 514



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 144/294 (48%), Gaps = 46/294 (15%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN 217
           N ++S   R G +  AR +F  M  R+S+S+N+M+  +  +G++ +A E F+  P +E N
Sbjct: 119 NTMLSGLSRSGAVGEARAVFLAMPARNSISWNAMVSCFAHAGDMCAAEECFEDAPDKE-N 177

Query: 218 LISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM 276
            + W ++++GY  + SG ++ A Q FE MP R L+SWN+++ G VK  + +DA  +F  M
Sbjct: 178 AVLWTAMVSGY--MDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTM 235

Query: 277 PK----------------------------------------RDVVSWANMIDGYAKLGR 296
            +                                        R V +  +++  Y K G 
Sbjct: 236 VRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGD 295

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           +D A +LF EM  RDV+A NAM+ GY  +G   +A+E+F+ M+ +  + P+  + V VL+
Sbjct: 296 LDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQ-GVEPNWITFVAVLT 354

Query: 357 AIAQLGHIDKGV-AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           A    G  D G+    R  E         H   ++D+  + GS+E A+ +   +
Sbjct: 355 ACIHTGMCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSM 408



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 104/200 (52%), Gaps = 11/200 (5%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLML-DNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
           WNA++  Y      ++AL +F  M+ D  V  ++ + S VL  CS L  +  G Q+H   
Sbjct: 212 WNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWC 271

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
            K+     +     L+S+Y +CG L+ A +LF +M IRD +++N+MI GY   G+   A 
Sbjct: 272 TKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAI 331

Query: 206 ELFDSMPIR--ERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLIS-----WNSML 257
           ELF+ M  +  E N I++ +VL   A + +G+  F  Q FE+M E   I      ++ M+
Sbjct: 332 ELFEKMKSQGVEPNWITFVAVLT--ACIHTGMCDFGMQCFERMQEVYGIEARVDHYSCMV 389

Query: 258 HGCVKCGKMDDAQALFDKMP 277
               + G ++ A +L   MP
Sbjct: 390 DLLCRAGSLERAVSLIRSMP 409



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 131/304 (43%), Gaps = 36/304 (11%)

Query: 241 IFEKMPERDLIS-WNSMLHGCVKCGK--------MDDAQALFDKMPKRDVVSWANMIDGY 291
           +    P+R   + +N +L G  +  +        + DA+ LFD++P+ D VS+  ++  +
Sbjct: 33  VASTTPQRKTTADYNRLLAGYARAARPGGRRDRLLADARHLFDRIPRPDAVSYNTLLSCH 92

Query: 292 AKLGRVDIARRLFDEMP--KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
              G V  AR LF  MP   R+V + N M+ G  R+G   +A  +F  M        +  
Sbjct: 93  FAAGDVRGARDLFAAMPATARNVTSWNTMLSGLSRSGAVGEARAVFLAMPAR-----NSI 147

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           S   ++S  A  G +    A     E      N     A++  Y   G +E A++ FE +
Sbjct: 148 SWNAMVSCFAHAGDM---CAAEECFEDAPDKENAVLWTAMVSGYMDSGHVEKAMQFFEAM 204

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMER-LSIEPDDITFTGLLNACAHAGLVKEG 468
              S+  WNA++ G   +   E A  +   M R   + P++ T + +L  C++   +  G
Sbjct: 205 PVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCSNLSALGFG 264

Query: 469 LLCFELMRRIHK------LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WR 521
                  R++H+      L   +     +V +  + G ++ A  L  +M +   DVI W 
Sbjct: 265 -------RQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIR--DVIAWN 315

Query: 522 TLLS 525
            ++S
Sbjct: 316 AMIS 319



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 4/126 (3%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D   WNA+I  Y+H  D +EA+ +F  M   GV  +  +   VL AC   G+ + G+Q 
Sbjct: 309 RDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQC 368

Query: 142 HGLLRKVAFGSDLFLQ--NCLISLYVRCGYLEFARQLFDKMGIRDSVS-YNSMIDGYVKS 198
              +++V +G +  +   +C++ L  R G LE A  L   M  +   S Y ++++     
Sbjct: 369 FERMQEV-YGIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSAYGTLLNASRVY 427

Query: 199 GNIESA 204
            N+E A
Sbjct: 428 KNMEFA 433


>gi|242092962|ref|XP_002436971.1| hypothetical protein SORBIDRAFT_10g012871 [Sorghum bicolor]
 gi|241915194|gb|EER88338.1| hypothetical protein SORBIDRAFT_10g012871 [Sorghum bicolor]
          Length = 726

 Score =  325 bits (832), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 185/544 (34%), Positives = 295/544 (54%), Gaps = 40/544 (7%)

Query: 81  KKDPFLWNAIIKTYSHGLDP--KEALVMFC-LMLDNGVSVDKFSASLVLKACSRLGLIEE 137
           ++D F W A+I  Y+ G D    +AL +F  L+ D+G   ++++   VL+AC RLG ++ 
Sbjct: 210 RRDVFAWTAVISGYAKGTDQCCGKALQLFVKLLADDGAMPNEYTYDCVLRACVRLGALDF 269

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G  +HG L +  F  +  + + L+ LY     L+ A  +++ +     ++ N++I G + 
Sbjct: 270 GRSVHGCLIRCGFWCEQLITSALVDLYCTSDALDDALLVYNDLDRPPLITSNTLIAGLIS 329

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
            G  E A+                                   +F +MPE+D  S+N M+
Sbjct: 330 IGRTEDAK----------------------------------MVFSQMPEQDSGSYNLMI 355

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP-KRDVVACN 316
                 GK++  + +F+KMPKR++VS  +M+    + GR++   +LF ++  +RD V  N
Sbjct: 356 KAYAMEGKLEHCRRMFEKMPKRNMVSLNSMMSVLLQNGRLEEGLKLFKQIKDERDTVTWN 415

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
           +M+ GY++N    +AL++F  M C LY+    ++   +L A A +G +++G  IH +L K
Sbjct: 416 SMISGYIQNDEPSEALKLFVVM-CRLYIGCSPSTFSALLHACATIGTLEQGRMIHAHLCK 474

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
             F  NG  G AL DMY KCG + +A   F  +   +V  W  ++NGLA +GL   A   
Sbjct: 475 TSFDSNGHVGTALADMYFKCGCVIDARSAFTYVTSPNVASWTCLVNGLAQNGLWLEALLQ 534

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
              M +  + P++ITF GLL A A AGLV +G+  F  M     L P +QHY C VD+LG
Sbjct: 535 FGRMLKHHVSPNEITFLGLLMASARAGLVNKGMKIFYSMENF-GLVPTVQHYTCAVDLLG 593

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556
           R GH   A   I +MP+  + +IW  LL+AC    +L +GE VA+ L  M + + S+YV 
Sbjct: 594 RTGHTREAEKFIYEMPLPADGIIWEALLTACWYSVDLEMGEKVAQRLFLMGTKHRSAYVA 653

Query: 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYM 616
           +SN++A LG W D  +VR+ M+  N KK PGCSWIE++ +VH F V D++  +   +Y M
Sbjct: 654 MSNIYAKLGKWEDVVKVRTQMRSLNEKKEPGCSWIEIKDIVHIFLVDDQNHPERDHVYSM 713

Query: 617 LDNM 620
           L+ +
Sbjct: 714 LEGL 717



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 162/361 (44%), Gaps = 17/361 (4%)

Query: 174 RQLFDKMGIRDSVSYNSMIDGYVKSGNIE-----SARELFDSMPIRERNLISWNSVLNGY 228
           R LFD    RD+VS+N+M+ G+ + GN+      +AR      P  E    S        
Sbjct: 69  RYLFDGTRHRDAVSWNAMVSGHARRGNVPDALGTAARMHSSGQPFTEATFASVVGACARG 128

Query: 229 AQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMI 288
              ++G Q   Q+ +   E   +   S+L     C  +   +ALF+ + +R+ + W+ M+
Sbjct: 129 RMFRAGTQAHGQVIKSGCEGSAVIGASLLDFYSSCFDLRATRALFESLHQRNELLWSPMV 188

Query: 289 DGYAKLGRVDIARRLFDEMP-KRDVVACNAMMGGYVRNGYSM--KALEIFDNMQCELYLH 345
               + G +  A  L    P +RDV A  A++ GY +       KAL++F  +  +    
Sbjct: 189 VALVRFGLLAEALDLLQITPARRDVFAWTAVISGYAKGTDQCCGKALQLFVKLLADDGAM 248

Query: 346 PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKV 405
           P++ +   VL A  +LG +D G ++H  L +  F        AL+D+Y    ++++A+ V
Sbjct: 249 PNEYTYDCVLRACVRLGALDFGRSVHGCLIRCGFWCEQLITSALVDLYCTSDALDDALLV 308

Query: 406 FEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLV 465
           +  ++   +   N +I GL   G  E A  +  +M     E D  ++  ++ A A  G +
Sbjct: 309 YNDLDRPPLITSNTLIAGLISIGRTEDAKMVFSQMP----EQDSGSYNLMIKAYAMEGKL 364

Query: 466 KEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLS 525
           +     FE M + + +         M+ +L + G +E    L + +  E + V W +++S
Sbjct: 365 EHCRRMFEKMPKRNMVS-----LNSMMSVLLQNGRLEEGLKLFKQIKDERDTVTWNSMIS 419

Query: 526 A 526
            
Sbjct: 420 G 420



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 46/244 (18%)

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLM--LDNGVSVDKFSASLVLKACSRL 132
           +   ++++D   WN++I  Y    +P EAL +F +M  L  G S   FSA  +L AC+ +
Sbjct: 402 FKQIKDERDTVTWNSMISGYIQNDEPSEALKLFVVMCRLYIGCSPSTFSA--LLHACATI 459

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
           G +E+G  IH  L K +F S+  +   L  +Y +CG +  AR  F               
Sbjct: 460 GTLEQGRMIHAHLCKTSFDSNGHVGTALADMYFKCGCVIDARSAFT-------------- 505

Query: 193 DGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ----LKSGLQFAWQIFEKMPER 248
             YV S N+                  SW  ++NG AQ    L++ LQF  ++ +     
Sbjct: 506 --YVTSPNVA-----------------SWTCLVNGLAQNGLWLEALLQFG-RMLKHHVSP 545

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS----WANMIDGYAKLGRVDIARRLF 304
           + I++  +L    + G ++    +F  M    +V     +   +D   + G    A +  
Sbjct: 546 NEITFLGLLMASARAGLVNKGMKIFYSMENFGLVPTVQHYTCAVDLLGRTGHTREAEKFI 605

Query: 305 DEMP 308
            EMP
Sbjct: 606 YEMP 609



 Score = 46.2 bits (108), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 22/222 (9%)

Query: 20  LLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           LL  C T+  + Q   IHA +  T F  N H+ T L   +    C         +     
Sbjct: 452 LLHACATIGTLEQGRMIHAHLCKTSFDSNGHVGTALADMYFKCGC---------VIDARS 502

Query: 77  AFREKKDPFL--WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
           AF     P +  W  ++   +      EAL+ F  ML + VS ++ +   +L A +R GL
Sbjct: 503 AFTYVTSPNVASWTCLVNGLAQNGLWLEALLQFGRMLKHHVSPNEITFLGLLMASARAGL 562

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI-RDSVSYNSMID 193
           + +G++I   +        +    C + L  R G+   A +   +M +  D + + +++ 
Sbjct: 563 VNKGMKIFYSMENFGLVPTVQHYTCAVDLLGRTGHTREAEKFIYEMPLPADGIIWEALLT 622

Query: 194 GYVKSGNIE----SARELFDSMPIRERNLISWNSVLNGYAQL 231
               S ++E     A+ LF  M  + R+  ++ ++ N YA+L
Sbjct: 623 ACWYSVDLEMGEKVAQRLF-LMGTKHRS--AYVAMSNIYAKL 661


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 198/644 (30%), Positives = 339/644 (52%), Gaps = 73/644 (11%)

Query: 20  LLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           LL++C  L  + Q   +HA ++ +G   N +L   L++ ++   C  LT+ AR +F    
Sbjct: 102 LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAK--CGSLTD-ARRVF---D 155

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
             R++ +   W A+I+ +  G    EA   +  M   G   DK +   +L A +   L++
Sbjct: 156 GIRDR-NIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQ 214

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G ++H  + K     +  +   L+ +Y +CG                            
Sbjct: 215 VGQKVHMEIAKAGLELEPRVGTSLVGMYAKCG---------------------------- 246

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----IS 252
              +I  A+ +FD +P  E+N+++W  ++ GYAQ +  +  A ++ EKM + ++    I+
Sbjct: 247 ---DISKAQVIFDKLP--EKNVVTWTLLIAGYAQ-QGQVDVALELLEKMQQAEVAPNKIT 300

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           + S+L GC     ++  + +   + +    R++     +I  Y K G +  AR+LF ++P
Sbjct: 301 YTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLP 360

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            RDVV   AM+ GY + G+  +A+++F  MQ +  + PD  +    L++ +    + +G 
Sbjct: 361 HRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQ-QQGIKPDKMTFTSALTSCSSPAFLQEGK 419

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
           +IH+ L    +SL+     AL+ MY+KCGS+++A  VF Q+ + +V  W AMI G A HG
Sbjct: 420 SIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHG 479

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
               A +   +M++  I+PD +TFT +L+AC H GLV+EG   F  M   + ++P ++HY
Sbjct: 480 RCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHY 539

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
            C VD+LGRAGH+E A N+I  MP +P   +W  LLSACR + ++  GE  A++++ +D 
Sbjct: 540 SCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDP 599

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
            +  +YV LSN++A  G + DA +VR +M++R++ K PG SWIE++G VH F V DKS  
Sbjct: 600 DDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHP 659

Query: 609 QVRDIYYMLDNM--------WTPDS------------VATSCTH 632
           + ++IY  L  +        + PD+            V T C+H
Sbjct: 660 EAKEIYAELGKLTEQIKEQGYVPDTRFVLHDVDEEQKVQTLCSH 703


>gi|224066751|ref|XP_002302197.1| predicted protein [Populus trichocarpa]
 gi|222843923|gb|EEE81470.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 174/438 (39%), Positives = 272/438 (62%), Gaps = 11/438 (2%)

Query: 163 LYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWN 222
           +Y +CG +  +R+LF+ M  R+ V++N+MI GY K+G+++SA  LFD M  R  N +SW 
Sbjct: 1   MYAKCGDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTR--NAVSWI 58

Query: 223 SVLNGYAQLKSGLQFAWQIFEKMP--ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRD 280
            +++G+A+    +  A + F ++P   +++++W  M+ G    G+M+ A+ LF+ MP+R+
Sbjct: 59  EMIDGFAR-SGDMVAARRTFNEVPFELKNVVTWTVMIDGYASKGEMEAARLLFEDMPQRN 117

Query: 281 VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQC 340
              W++MI GY K+G V  AR +FD +P R++V  N+++ GY +NG+  +AL+ F  MQ 
Sbjct: 118 FFVWSSMISGYCKIGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQN 177

Query: 341 ELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE 400
           E Y  PD+ ++V VLSA AQL  +D G  +H+ +      LN     AL+DMY+KCG + 
Sbjct: 178 EGY-EPDEVTVVGVLSACAQLSLLDVGKDVHKMICAKGMKLNEFVVNALVDMYAKCGDLT 236

Query: 401 NAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460
            A  +FE++ + +   WN+MI+G A+HG  + A +    ME  + +PD+ITF  +L+AC 
Sbjct: 237 GARLIFERMTNKNNACWNSMISGFAVHGKTKEALEFFGRMEESNEKPDEITFLSVLSACV 296

Query: 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIW 520
           H G V+ GL  F  M R + L   ++HYGC+VD+LGRAG I+ A +LI+ MPM+PND +W
Sbjct: 297 HGGFVEVGLEIFSKMER-YGLSASIKHYGCLVDLLGRAGRIQDAYHLIKSMPMKPNDTVW 355

Query: 521 RTLLSACRNYENLNVGEPVAKHLIGMDSS----NSSSYVLLSNMFAGLGMWNDARRVRSM 576
              L ACR + + ++ E V + +   DSS    N   Y LL N++AG G W  A RV  +
Sbjct: 356 GAFLGACRIHMDNDMVEQVVEDVCTSDSSVDSGNDPHYALLLNIYAGSGSWEKAGRVSMV 415

Query: 577 MKERNLKKLPGCSWIELE 594
           M +R L+K  G S + LE
Sbjct: 416 MADRGLQKTSGRSSLMLE 433



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 167/385 (43%), Gaps = 63/385 (16%)

Query: 74  KYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLM-LDNGVS----VDKFSASLVLKA 128
           K   +  +++   WNA+I  Y    D K A V+F  M   N VS    +D F+ S  + A
Sbjct: 13  KLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMIDGFARSGDMVA 72

Query: 129 CSRL-------------------GLIEEG-LQIHGLLRKVAFGSDLFLQNCLISLYVRCG 168
             R                    G   +G ++   LL +     + F+ + +IS Y + G
Sbjct: 73  ARRTFNEVPFELKNVVTWTVMIDGYASKGEMEAARLLFEDMPQRNFFVWSSMISGYCKIG 132

Query: 169 YLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLN 226
            ++ AR +FD++ +R+ V++NS+I GY ++G  E A + F  M     E + ++   VL+
Sbjct: 133 NVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGVLS 192

Query: 227 GYAQLK---SGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS 283
             AQL     G      I  K  + +    N+++    KCG +  A+ +F++M  ++   
Sbjct: 193 ACAQLSLLDVGKDVHKMICAKGMKLNEFVVNALVDMYAKCGDLTGARLIFERMTNKNNAC 252

Query: 284 WANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELY 343
           W +MI G+A  G+                               + +ALE F  M+ E  
Sbjct: 253 WNSMISGFAVHGK-------------------------------TKEALEFFGRME-ESN 280

Query: 344 LHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAI 403
             PD+ + + VLSA    G ++ G+ I   +E+   S + KH   L+D+  + G I++A 
Sbjct: 281 EKPDEITFLSVLSACVHGGFVEVGLEIFSKMERYGLSASIKHYGCLVDLLGRAGRIQDAY 340

Query: 404 KVFEQIEDGSVDH-WNAMINGLAIH 427
            + + +     D  W A +    IH
Sbjct: 341 HLIKSMPMKPNDTVWGAFLGACRIH 365



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 10/167 (5%)

Query: 20  LLRKCKTLN--DVNQ-IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L  C  L+  DV + +H  +   G   N  +   LV  ++   C  LT  AR IF +  
Sbjct: 190 VLSACAQLSLLDVGKDVHKMICAKGMKLNEFVVNALVDMYAK--CGDLTG-ARLIFERM- 245

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
                K+   WN++I  ++     KEAL  F  M ++    D+ +   VL AC   G +E
Sbjct: 246 ---TNKNNACWNSMISGFAVHGKTKEALEFFGRMEESNEKPDEITFLSVLSACVHGGFVE 302

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183
            GL+I   + +    + +    CL+ L  R G ++ A  L   M ++
Sbjct: 303 VGLEIFSKMERYGLSASIKHYGCLVDLLGRAGRIQDAYHLIKSMPMK 349


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 199/603 (33%), Positives = 324/603 (53%), Gaps = 52/603 (8%)

Query: 27  LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFL 86
           ++ + QIHA+M+ TG   +    +K+VA F S   +   ++AR +F +          + 
Sbjct: 1   MSQLKQIHAQMLRTGLFFDPFTASKIVA-FCSLQESGSLQYARLVFSQI----PNPTSYT 55

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
            N+II+  +     +EAL+ +  M+  G+  D+++   + K+C       EG QIH    
Sbjct: 56  CNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSS---EGKQIHCHST 112

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           K+ F SD + QN L+++Y  C                               G + SAR+
Sbjct: 113 KLGFASDTYAQNTLMNMYSNC-------------------------------GCLVSARK 141

Query: 207 LFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN-----SMLHGCV 261
           +FD M   ++ ++SW +++  +AQ     + A ++F++M + + +  N     ++L  C 
Sbjct: 142 VFDKM--EDKTVVSWATMIGVHAQWDQPNE-AVRLFDRMMKSENVKPNEVTLVNVLTACA 198

Query: 262 KCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNA 317
           +   +   + + + + +    R VV    ++D Y K G V +AR LFD+  ++++ + N 
Sbjct: 199 RARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNI 258

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           M+ G+V +    +AL +F  MQ +  +  D  ++  +L A   LG ++ G  +H Y++K 
Sbjct: 259 MINGHVEDSNYEEALLLFREMQTK-GIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQ 317

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLL 437
           +  ++   G AL+DMY+KCGSIE AI+VF ++ +  V  W A+I GLA+ G  E A    
Sbjct: 318 RIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYF 377

Query: 438 MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
            EM    ++PD ITF G+L AC+HAG V EG+  F  M   + ++P ++HYG +VDILGR
Sbjct: 378 DEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGR 437

Query: 498 AGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557
           AG I  A  LI+ MPM P+  +   LL ACR + NL   E  AK L+ +D  +S +YVLL
Sbjct: 438 AGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLL 497

Query: 558 SNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           SN++     W +A+R R +M ER ++K PGCS IE+ GVVHEF   D S  Q  +I  ML
Sbjct: 498 SNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEINEML 557

Query: 618 DNM 620
           ++M
Sbjct: 558 EDM 560



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 131/291 (45%), Gaps = 42/291 (14%)

Query: 23  KCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKK 82
           + + L  V +IH  +   GF ++  L T L+  +    C  L   AR +F K     ++K
Sbjct: 199 RARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQL---ARDLFDK----AQEK 251

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           + F WN +I  +    + +EAL++F  M   G+  DK + + +L AC+ LG +E G  +H
Sbjct: 252 NLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLH 311

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
             ++K     D+ L   L+ +Y +CG +E A Q+F +M  +D +++ ++I G    G  E
Sbjct: 312 AYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAE 371

Query: 203 SARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVK 262
           +A + FD M I                              K  + D I++  +L  C  
Sbjct: 372 NALQYFDEMHI------------------------------KGVKPDAITFVGVLAACSH 401

Query: 263 CGKMDDAQALFDKMP-----KRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
            G +D+  + F+ M      +  +  +  ++D   + GR+  A  L   MP
Sbjct: 402 AGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMP 452


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 212/709 (29%), Positives = 348/709 (49%), Gaps = 94/709 (13%)

Query: 2   FVSANYNQPCNSTQ-STLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP 60
           F+S     P N  +    LLL +C +L ++  I   +   G  +     TKLV+ F    
Sbjct: 24  FLSQRNYIPANVYEHPAALLLERCSSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRY- 82

Query: 61  CTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKF 120
              + E AR +F       +KK   L+  ++K ++   D  +AL  F  M D+ V    +
Sbjct: 83  -GSVDEAAR-VFEPI----DKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVY 136

Query: 121 SASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
           + + +LK C     +  G +IHGLL K  F  DLF    L ++Y +C  +  AR++FD+M
Sbjct: 137 NFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRM 196

Query: 181 GIRDSVSYNSMIDGYVKSGNIESARELFDSM-----------------PIRERNLISWNS 223
             RD VS+N+++ GY ++G    A E+ + M                  +    LI    
Sbjct: 197 PERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGK 256

Query: 224 VLNGYAQLKSG--------------------LQFAWQIFEKMPERDLISWNSMLHGCVKC 263
            ++GYA +++G                    L+ A  +F+ M ER+++SWNSM+   V+ 
Sbjct: 257 EIHGYA-MRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQN 315

Query: 264 GKMDDAQALFDKM------PK---------------------------------RDVVSW 284
               +A  +F KM      P                                  R+V   
Sbjct: 316 ENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVV 375

Query: 285 ANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYL 344
            ++I  Y K   VD A  +F ++  R +V+ NAM+ G+ +NG  ++AL  F  MQ    +
Sbjct: 376 NSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQART-V 434

Query: 345 HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIK 404
            PD  + V V++AIA+L        IH  + ++    N     AL+DMY+KCG+I  A  
Sbjct: 435 KPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARL 494

Query: 405 VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL 464
           +F+ + +  V  WNAMI+G   HG+G+ A +L  EM++ +I P+ +TF  +++AC+H+GL
Sbjct: 495 IFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGL 554

Query: 465 VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
           V+ GL CF +M+  + +EP + HYG MVD+LGRAG +  A + I  MP++P   ++  +L
Sbjct: 555 VEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAML 614

Query: 525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKK 584
            AC+ ++N+N  E VA+ L  ++  +   +VLL+N++    MW    +VR  M  + L+K
Sbjct: 615 GACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRK 674

Query: 585 LPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM--------WTPDS 625
            PGCS +E++  VH FF    +    + IY  L+ +        + PD+
Sbjct: 675 TPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPDT 723


>gi|354805213|gb|AER41630.1| CRR4 [Oryza nivara]
          Length = 748

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 212/621 (34%), Positives = 326/621 (52%), Gaps = 61/621 (9%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLV-ASFSS-SPCTPLTEFARYIF 72
           Q+ L +LR   +   + Q HAR++  G   +  L   LV A+FS+ SP        RY  
Sbjct: 3   QALLRILRTLGSTAHLTQAHARLLAAGLAASPRLLPALVAAAFSAHSP--------RYAA 54

Query: 73  FKYHAFREKKDPFLWNAIIK----------TYSHGLDPKEALVMFCLMLDNGVSVDKFSA 122
               A          N +++            +    P +AL  +  M   GV  + F+ 
Sbjct: 55  AALRAAGPAASTVSHNTLVERLAGARPRGRRPAPAPAPADALAAYAAMRAQGVPPNGFTF 114

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF---ARQLFDK 179
           + +L+AC+ LGL      +HG + +  FGSD+F+QN L+ +Y RCG       ARQ+FD+
Sbjct: 115 TFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGGVGAARQVFDE 174

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAW 239
           M  RD VS+NS++  Y+ SG+   A   F++MP  ERN++SWN+V+ G+A++   +  A 
Sbjct: 175 MVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMP--ERNVVSWNTVVAGFARMGD-MVTAR 231

Query: 240 QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDI 299
            +F++MP R+ +SWN M+ G    G ++ A+++FD+M ++DVVSW  M+  YAK+G +D 
Sbjct: 232 AVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGDLDT 291

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           A  LFD MP +++V+ NAM+ GY  N    +AL  F  M  E    PD+A+LV V+SA A
Sbjct: 292 ANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACA 351

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
           QLG ++    I  ++ K    L    G ALIDM++KCG +  A  +F ++E   +  W  
Sbjct: 352 QLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAQSIFYKMETRCIITWTT 411

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           MI+G A +GL   A  +   M R  ++ DD  F   L ACAH GL++EG   F  M   +
Sbjct: 412 MISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFNEMVERY 471

Query: 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPV 539
            ++P ++HYGCMVD+LGRA  IE                                    V
Sbjct: 472 NIQPRMEHYGCMVDLLGRAELIEY-----------------------------------V 496

Query: 540 AKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHE 599
           +K +  ++  NSS  VL+SN  A  G W+     R+ M+   ++K+PG S I++   VHE
Sbjct: 497 SKKITELEPFNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGIEKVPGSSSIQVGSEVHE 556

Query: 600 FFVRDKSRLQVRDIYYMLDNM 620
           F  +D    + ++IY  +D +
Sbjct: 557 FLAKDTRHKRRKEIYETVDGL 577


>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
          Length = 602

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 191/545 (35%), Positives = 312/545 (57%), Gaps = 12/545 (2%)

Query: 85  FLWNAII-KTYSHGLDPKEALVMFCLM-LDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           F+WN +I K   +GL  ++  +++ +  L  G+  +  +   +LKA      ++EG ++H
Sbjct: 55  FVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVH 114

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
             + +  F    F+   L+  YV CG +   RQ+FD+M     V +  +I  YV     E
Sbjct: 115 ASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPE 174

Query: 203 SARELFDSMPIRE----RNLISWNSVLNGYAQLKS-GLQFAWQIF-EKMP-ERDLISWNS 255
            A ELF +M  RE     ++++ ++V++    L   G+  A   F EK   E D    ++
Sbjct: 175 KALELFRTM--REVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSST 232

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           ++    +CG +D A   F + P +++V W  MI    +   +++ ++LF  MP RDVV+ 
Sbjct: 233 LISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSW 292

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           N+M+GG+ R G   +AL  F  M+    + P+  +L+  LSA A  G +D G  IH Y++
Sbjct: 293 NSMIGGFARIGQYQEALTWFHEMEFS-GVSPNALTLLSTLSACASHGALDTGAWIHAYVD 351

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           K+  + +G    +LIDMYSKCG I+ A+++FE+     +  W +++ GLA+HG GE A  
Sbjct: 352 KNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALH 411

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
              +M+   ++PDD+T  G+L+ACAHAGL+ +G   F+ M ++  L P+++HYGCMVD+L
Sbjct: 412 YFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGCMVDLL 471

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           GR G ++ A +LI  MPME N++IW   LSACR + N+ +GE  A+ L+G+D  +  + V
Sbjct: 472 GRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLDPRDPWARV 531

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY 615
           +LSNM+A    W+ +  +R  +K++ LKK PGCS IE+ G VH F V D S     +I  
Sbjct: 532 MLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSIEVNGSVHGFLVGDNSHPCYTEINS 591

Query: 616 MLDNM 620
           M++ +
Sbjct: 592 MVEKI 596



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 91/232 (39%), Gaps = 35/232 (15%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D   WN++I  ++     +EAL  F  M  +GVS +  +    L AC+  G ++ G  I
Sbjct: 287 RDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWI 346

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H  + K     D  L + LI +Y +CG ++ A Q+F++   RD  ++ S++ G    G  
Sbjct: 347 HAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRG 406

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
           E A   F  M                               E   + D ++   +L  C 
Sbjct: 407 EKALHYFSKMK------------------------------EAQVQPDDVTMVGVLSACA 436

Query: 262 KCGKMDDAQALFDKMPK-----RDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
             G +D     F  M K       V  +  M+D   ++G +  A  L   MP
Sbjct: 437 HAGLLDQGWWYFQSMEKVFGLVPKVEHYGCMVDLLGRMGCLKEAYDLIMGMP 488


>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 179/509 (35%), Positives = 269/509 (52%), Gaps = 67/509 (13%)

Query: 110 MLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY 169
           M+   VS   F+ S ++KACS +  +  G  +HG + K  F S +F+Q  L+        
Sbjct: 1   MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALV-------- 52

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA 229
                                  D Y  +G I  AR +FD                    
Sbjct: 53  -----------------------DFYGNAGKIVEARRVFD-------------------- 69

Query: 230 QLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMID 289
                         +M ERD+ +W +M+    + G M  A+ LFD+MP R+  SW  MID
Sbjct: 70  --------------EMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMID 115

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
           GY++L  V+ A  LF +MP RD+++   M+  Y +N    +AL +F+ MQ    + PD+ 
Sbjct: 116 GYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTN-GIDPDEV 174

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           ++  ++SA A LG +D G  IH Y  +  F L+   G ALIDMY+KCGS++ ++ VF ++
Sbjct: 175 TMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKL 234

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
              ++  WN++I GLA+HG  E A  +   M+R  I+P+ +TF  +L AC HAGLV+EG 
Sbjct: 235 RKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGR 294

Query: 470 LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRN 529
             F  M R   + PE++HYGCMVD+LG+AG +E A  L+  M MEPN VIW  LL  C+ 
Sbjct: 295 KRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKL 354

Query: 530 YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKL-PGC 588
           + NL + +        ++ +NS  Y LL NM+A +  W++   +R+ MKE  ++K  PG 
Sbjct: 355 HRNLKIAQVAVNESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGS 414

Query: 589 SWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           SWIE++  +H+F   DKS L   +IY +L
Sbjct: 415 SWIEMDRKIHQFAASDKSHLASDEIYTLL 443



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 13/219 (5%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D   W  +I  YS     +EAL +F  M  NG+  D+ + + ++ AC+ LG ++ G +I
Sbjct: 136 RDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGALDLGKEI 195

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H    ++ F  D+++ + LI +Y +CG L+ +  +F K+  ++   +NS+I+G    G  
Sbjct: 196 HLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYA 255

Query: 202 ESARELFDSMPIRER---NLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLISWNSML 257
           E A  +F  M  RE+   N +++ SVL   A   +GL +   + F  M     I      
Sbjct: 256 EEALAMFSRMQ-REKIKPNGVTFISVLG--ACTHAGLVEEGRKRFLSMSRDFSIPPEIEH 312

Query: 258 HGCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDG 290
           +GC+     K G ++DA  L   M  + + V W  ++ G
Sbjct: 313 YGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGG 351



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 111/229 (48%), Gaps = 17/229 (7%)

Query: 10  PCNSTQSTLLLLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTE 66
           P   T +T++    C  L  ++   +IH   +  GF  + ++ + L+  ++   C  L +
Sbjct: 171 PDEVTMATII--SACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAK--CGSLDK 226

Query: 67  FARYIFFKYHAFREKKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
            +  +FFK      KK+ F WN+II+  + HG   +EAL MF  M    +  +  +   V
Sbjct: 227 -SLVVFFKLR----KKNLFCWNSIIEGLAVHGY-AEEALAMFSRMQREKIKPNGVTFISV 280

Query: 126 LKACSRLGLIEEGLQ-IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR- 183
           L AC+  GL+EEG +    + R  +   ++    C++ L  + G LE A +L   M +  
Sbjct: 281 LGACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEP 340

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVL-NGYAQL 231
           +SV + +++ G     N++ A+   +   + E N   + ++L N YA++
Sbjct: 341 NSVIWGALLGGCKLHRNLKIAQVAVNESKVLEPNNSGYYTLLVNMYAEV 389


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 200/585 (34%), Positives = 301/585 (51%), Gaps = 80/585 (13%)

Query: 109 LMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG-SDLFLQNCLISLYVRC 167
           L+     +  +    LVL+ C R   I +  ++   +    F  +D FL N L+ LY + 
Sbjct: 13  LLCSRSTATSEAYTQLVLE-CVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKF 71

Query: 168 GYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWN----- 222
           G L  A+ LFDKM  RD  S+N+++  Y KSG+I++ +  FD MP R+   +S+N     
Sbjct: 72  GKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDS--VSYNTTIAG 129

Query: 223 ------------------------------SVLNGYAQLKSGLQFAWQIFEKMPERDLIS 252
                                         S+LN  AQL S L++  QI   +  R+ + 
Sbjct: 130 FSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQL-SDLRYGKQIHGSIIVRNFLG 188

Query: 253 ----WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAK--------------- 293
               WN++     KCG+++ A+ LFD + K+++VSW  MI GYAK               
Sbjct: 189 NVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMR 248

Query: 294 --------------------LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE 333
                                GRVD ARR+F E  ++D+V   AMM GY +NG    AL 
Sbjct: 249 LSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALL 308

Query: 334 IFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMY 393
           +F+ M  E ++ PD  +L  V+S+ A+L  +  G A+H        + N     ALIDMY
Sbjct: 309 LFNEMLLE-HIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMY 367

Query: 394 SKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
           SKCG I++A  VF  +   +V  WNAMI G A +G  + A +L   M +   +PD++TF 
Sbjct: 368 SKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFI 427

Query: 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPM 513
           G+L+AC H   +++G   F+ +   H + P L HY CMV++LGR G IE A  LI++M  
Sbjct: 428 GILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAH 487

Query: 514 EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV 573
           +P+ +IW TLLS C    ++   E  A+HL  +D + +  Y++LSNM+A +G W D   V
Sbjct: 488 DPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASV 547

Query: 574 RSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           R++MK +N+KK  G SWIE++  VH F   D++  +  DIY  L+
Sbjct: 548 RNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLN 592


>gi|357150678|ref|XP_003575540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 491

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 154/357 (43%), Positives = 229/357 (64%), Gaps = 1/357 (0%)

Query: 264 GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV 323
           G++ DA+ +FD MP+  VVSW  ++DG+ + G +D A  LF EM +R+VV+ N +M G+ 
Sbjct: 117 GRLADARKVFDGMPETTVVSWNVLLDGFVRAGDLDAAWELFVEMTERNVVSWNTVMVGFA 176

Query: 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG 383
           R G + +A+E+F  M     L PD+A++V  +SA+  +G +  G + H Y+ + +FSL+G
Sbjct: 177 RLGRAQEAVELFVEMTTVYGLVPDEATMVGFVSAVRNIGLLGLGRSAHGYVIRREFSLDG 236

Query: 384 KHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
             GV LI+MY++CGS+  A   F  +   +V+HW + I G A HG  ++A  L  EM  L
Sbjct: 237 ALGVGLINMYTRCGSMTAAYLCFSSVTSKNVEHWTSAIGGFAAHGHPDMALRLFAEMREL 296

Query: 444 SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503
            IEP+D+TF  +LNAC+H GLV EG   F +MR++  + P +QHYGC+VD+LGRAG +E 
Sbjct: 297 GIEPNDVTFVAVLNACSHGGLVDEGFKYFNMMRKM-GIRPSIQHYGCLVDLLGRAGFLEE 355

Query: 504 ARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563
           A NL   +P +P  V W +LL+AC+ + N+++ E  A+ L   + ++ SSYVLLSN +A 
Sbjct: 356 AFNLASSLPKDPGFVTWSSLLAACQTHGNVDMAEVAAQKLADAEPNHGSSYVLLSNAYAR 415

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            G W D +R RS M+     K PG SWIE++G VH F   DKS  + + IY ML+N+
Sbjct: 416 AGQWEDLKRTRSRMEAHRAVKKPGLSWIEVDGSVHSFGTADKSHTENKGIYQMLENL 472



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 118/437 (27%), Positives = 201/437 (45%), Gaps = 45/437 (10%)

Query: 48  LTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEA-LVM 106
           L   L++  +SSP  P          K    +   DP    A I+  +    P +A L  
Sbjct: 5   LDCTLLSPATSSPFPP----------KPRPSKRAPDP----AAIRCRAAPSGPGDAALRA 50

Query: 107 FCLMLDNGVSVDKFSASL-VLKACSRL-GLIEEGLQIHGLLRKVAFG---SDLFLQNCLI 161
           F      G ++D   A +  L AC RL     E  QIH LL K       S ++    L 
Sbjct: 51  FRAYHVAGRALDANPALMPALAACGRLLTAAAEAEQIHTLLVKSGLPRSVSGVYASTSLA 110

Query: 162 SLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISW 221
            +Y R G L  AR++FD M     VS+N ++DG+V++G++++A ELF  M   ERN++SW
Sbjct: 111 RVYARHGRLADARKVFDGMPETTVVSWNVLLDGFVRAGDLDAAWELFVEM--TERNVVSW 168

Query: 222 NSVLNGYAQLKSGLQFAWQIFEKMP--------ERDLISWNSMLH--GCVKCGKMDDAQA 271
           N+V+ G+A+L    Q A ++F +M         E  ++ + S +   G +  G+      
Sbjct: 169 NTVMVGFARLGRA-QEAVELFVEMTTVYGLVPDEATMVGFVSAVRNIGLLGLGRSAHGYV 227

Query: 272 LFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKA 331
           +  +    D      +I+ Y + G +  A   F  +  ++V    + +GG+  +G+   A
Sbjct: 228 IRREF-SLDGALGVGLINMYTRCGSMTAAYLCFSSVTSKNVEHWTSAIGGFAAHGHPDMA 286

Query: 332 LEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALID 391
           L +F  M+ EL + P+D + V VL+A +  G +D+G      + K     + +H   L+D
Sbjct: 287 LRLFAEMR-ELGIEPNDVTFVAVLNACSHGGLVDEGFKYFNMMRKMGIRPSIQHYGCLVD 345

Query: 392 MYSKCGSIENAIKVFEQI-EDGSVDHWNAMINGLAIHG---LGELAFDLLMEMERLSIEP 447
           +  + G +E A  +   + +D     W++++     HG   + E+A   L +      EP
Sbjct: 346 LLGRAGFLEEAFNLASSLPKDPGFVTWSSLLAACQTHGNVDMAEVAAQKLAD-----AEP 400

Query: 448 D-DITFTGLLNACAHAG 463
           +   ++  L NA A AG
Sbjct: 401 NHGSSYVLLSNAYARAG 417



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 127/299 (42%), Gaps = 28/299 (9%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLD-NGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
           WN ++  ++     +EA+ +F  M    G+  D+ +    + A   +GL+  G   HG +
Sbjct: 168 WNTVMVGFARLGRAQEAVELFVEMTTVYGLVPDEATMVGFVSAVRNIGLLGLGRSAHGYV 227

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
            +  F  D  L   LI++Y RCG +  A   F  +  ++   + S I G+   G+ + A 
Sbjct: 228 IRREFSLDGALGVGLINMYTRCGSMTAAYLCFSSVTSKNVEHWTSAIGGFAAHGHPDMAL 287

Query: 206 ELFDSMPIR--ERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
            LF  M     E N +++ +VLN  +    +  G ++ + +  KM  R  I      +GC
Sbjct: 288 RLFAEMRELGIEPNDVTFVAVLNACSHGGLVDEGFKY-FNMMRKMGIRPSIQH----YGC 342

Query: 261 V-----KCGKMDDAQALFDKMPK-RDVVSWANMIDGYAKLGRVDI----ARRLFDEMPKR 310
           +     + G +++A  L   +PK    V+W++++      G VD+    A++L D  P  
Sbjct: 343 LVDLLGRAGFLEEAFNLASSLPKDPGFVTWSSLLAACQTHGNVDMAEVAAQKLADAEPNH 402

Query: 311 D---VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
               V+  NA    Y R G           M+    +     S + V  ++   G  DK
Sbjct: 403 GSSYVLLSNA----YARAGQWEDLKRTRSRMEAHRAVKKPGLSWIEVDGSVHSFGTADK 457


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 202/593 (34%), Positives = 303/593 (51%), Gaps = 49/593 (8%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           QIHA ++ +G + + ++   LVA +      P    A  IF       E KD   WN+++
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYVRFGKMPE---AAVIFGNL----EGKDIVTWNSML 233

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
             +       EAL  F  + +  +  D+ S   ++ A  RLG +  G +IH    K  F 
Sbjct: 234 TGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFD 293

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
           S++ + N LI +Y +C  + +  + FD M                               
Sbjct: 294 SNILVGNTLIDMYAKCCCMSYGGRAFDLMA------------------------------ 323

Query: 212 PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLISWNSMLHGC--VKC-G 264
               ++LISW +   GYAQ K  LQ A ++  ++     + D     S+L  C  + C G
Sbjct: 324 ---HKDLISWTTAAAGYAQNKCYLQ-ALELLRQLQMEGMDVDATMIGSILLACRGLNCLG 379

Query: 265 KMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVR 324
           K+ +      +    D V    +ID Y + G +D A R+F+ +  +DVV+  +M+  YV 
Sbjct: 380 KIKEIHGYTIRGGLSDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVH 439

Query: 325 NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK 384
           NG + KALE+F +M+ E  L PD  +LV +LSA+  L  + KG  IH ++ +  F L G 
Sbjct: 440 NGLANKALEVFSSMK-ETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGS 498

Query: 385 HGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS 444
               L+DMY++CGS+E+A K+F   ++ ++  W AMI+   +HG GE A +L M M+   
Sbjct: 499 ISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEK 558

Query: 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504
           I PD ITF  LL AC+H+GLV EG    E+M+  ++LEP  +HY C+VD+LGR   +E A
Sbjct: 559 IIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEA 618

Query: 505 RNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL 564
             +++ M  EP   +W  LL ACR + N  +GE  A+ L+ +D  N  +YVL+SN+FA  
Sbjct: 619 YQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAAN 678

Query: 565 GMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           G W D   VR  MK   L K PGCSWIE+   +H F  RDK   +   IY  L
Sbjct: 679 GRWKDVEEVRMRMKGSGLTKNPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKL 731



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 155/611 (25%), Positives = 259/611 (42%), Gaps = 110/611 (18%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE--- 137
           ++  F WNA++  Y    +   AL M+  M   GVS D ++  ++LKAC   G++E+   
Sbjct: 20  ERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKAC---GIVEDLFC 76

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMIDGYV 196
           G +IHGL  K    S +F+ N L++LY +C  +  AR+LFD+M +R D VS+NS+I  Y 
Sbjct: 77  GAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYS 136

Query: 197 KSGNIESARELFDSM--PIRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLI 251
            +G    A  LF  M       N  ++ + L        +K G+Q    I +     D+ 
Sbjct: 137 GNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVY 196

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
             N+++   V+ GKM +A  +F  +  +D+V+W +M+                       
Sbjct: 197 VANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLT---------------------- 234

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
                    G+++NG   +ALE F ++Q    L PD  S++ ++ A  +LG++  G  IH
Sbjct: 235 ---------GFIQNGLYSEALEFFYDLQ-NADLKPDQVSIISIIVASGRLGYLLNGKEIH 284

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
            Y  K+ F  N   G  LIDMY+KC  +    + F+ +    +  W     G A +    
Sbjct: 285 AYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYL 344

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL-------EPE 484
            A +LL +++   ++ D      +L AC        GL C   ++ IH         +P 
Sbjct: 345 QALELLRQLQMEGMDVDATMIGSILLAC-------RGLNCLGKIKEIHGYTIRGGLSDPV 397

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMP-------------------------------- 512
           LQ+   ++D+ G  G I+ A  + E +                                 
Sbjct: 398 LQN--TIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKE 455

Query: 513 --MEPNDVIWRTLLSACRNYENLNVGEPVAKHLI--GMDSSNSSSYVLLSNMFAGLGMWN 568
             +EP+ V   ++LSA  +   L  G+ +   +I  G     S S  L+ +M+A  G   
Sbjct: 456 TGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLV-DMYARCGSVE 514

Query: 569 DARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVA- 627
           DA ++ +  K RNL        I    ++  + +       V     M D    PD +  
Sbjct: 515 DAYKIFTCTKNRNL--------ILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITF 566

Query: 628 ----TSCTHYG 634
                +C+H G
Sbjct: 567 LALLYACSHSG 577



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 92/183 (50%), Gaps = 8/183 (4%)

Query: 291 YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
           Y K G V  A  +FD+M +R +   NAMMGGYV NG ++ ALE++  M+  L +  D  +
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMR-HLGVSFDSYT 60

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEK---DQFSLNGKHGVALIDMYSKCGSIENAIKVFE 407
             ++L A   +  +  G  IH    K   D F        +L+ +Y+KC  I  A K+F+
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVN---SLVALYAKCNDINGARKLFD 117

Query: 408 QIE-DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVK 466
           ++     V  WN++I+  + +G+   A  L  EM +  +  +  TF   L AC  +  +K
Sbjct: 118 RMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIK 177

Query: 467 EGL 469
            G+
Sbjct: 178 LGM 180



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 19/144 (13%)

Query: 392 MYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDIT 451
           MY KCGS+ +A  +F+++ + S+  WNAM+ G   +G    A ++  EM  L +  D  T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC---------MVDILGRAGHIE 502
           F  LL AC     + E L C      IH L  +   YGC         +V +  +   I 
Sbjct: 61  FPVLLKACG----IVEDLFC---GAEIHGLAIK---YGCDSFVFVVNSLVALYAKCNDIN 110

Query: 503 AARNLIEDMPMEPNDVIWRTLLSA 526
            AR L + M +  + V W +++SA
Sbjct: 111 GARKLFDRMYVRNDVVSWNSIISA 134



 Score = 42.7 bits (99), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 10/157 (6%)

Query: 26  TLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPF 85
           TL    +IH  +I  GFI    ++  LV  ++   C  + +      +K     + ++  
Sbjct: 477 TLKKGKEIHGFIIRKGFILEGSISNTLVDMYAR--CGSVED-----AYKIFTCTKNRNLI 529

Query: 86  LWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
           LW A+I  Y      + A+ +F  M D  +  D  +   +L ACS  GL+ EG     ++
Sbjct: 530 LWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIM 589

Query: 146 RKVAFGSDLFLQN--CLISLYVRCGYLEFARQLFDKM 180
            K  +  + + ++  CL+ L  R   LE A Q+   M
Sbjct: 590 -KCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSM 625


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 190/593 (32%), Positives = 316/593 (53%), Gaps = 53/593 (8%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTT-KLVASFSSSPCTPLTEFARYIFFKYHAF 78
           LLR  +      Q+HA  +  G ++     +  LV ++          F R +   Y AF
Sbjct: 77  LLRAAQGPGTAAQLHACALRLGLLRGDAFASGALVHAY--------LRFGR-VRDAYRAF 127

Query: 79  RE--KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
            E   +D   WNA++          EA+ +F  M+  GV+ D  + S VL  C  LG   
Sbjct: 128 DEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRA 187

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
             L +H    K     +LF+          C                     N+MID Y 
Sbjct: 188 LALAMHLYAVKHGLDDELFV----------C---------------------NAMIDVYG 216

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGY---AQLKSGLQFAWQIFEKMPERDLISW 253
           K G +E  R++FD M    R+L++WNS+++G+    Q+ S ++    + +     D+++ 
Sbjct: 217 KLGMLEEVRKVFDGM--SSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTL 274

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKR-----DVVSWANMIDGYAKLGRVDIARRLFDEMP 308
            S+     +CG +   +++   M +R     D+++   ++D YAKL +++ A+R+FD MP
Sbjct: 275 LSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMP 334

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            RD V+ N ++ GY++NG + +A+ ++D+MQ    L P   + V VL A + LG + +G 
Sbjct: 335 VRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGT 394

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            +H    K   +L+   G  +ID+Y+KCG ++ A+ +FEQ    S   WNA+I+G+ +HG
Sbjct: 395 RMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHG 454

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
            G  A  L  +M++  I PD +TF  LL AC+HAGLV +G   F +M+  + ++P  +HY
Sbjct: 455 HGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHY 514

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
            CMVD+ GRAG ++ A + I +MP++P+  IW  LL ACR + N+ +G+  +++L  +D 
Sbjct: 515 ACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDP 574

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
            N   YVL+SNM+A +G W+    VRS+++ +NL+K PG S IE++  V+ F+
Sbjct: 575 KNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFY 627


>gi|297734691|emb|CBI16742.3| unnamed protein product [Vitis vinifera]
          Length = 674

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 190/573 (33%), Positives = 313/573 (54%), Gaps = 47/573 (8%)

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           D   + A+I  Y    + ++A  +F  M D  +  +    S ++   ++ GL++   ++ 
Sbjct: 99  DNVSYTAMITAYLKNNELRKAEKLFQTMPDRTIVAE----SAMIDGYAKAGLMDSAQKVF 154

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
             +      +++F    LIS Y R G +  A QLFD+M  ++ VS+ +M+ GY ++G I+
Sbjct: 155 DAM----IDTNVFSWTSLISGYFRDGQVAKACQLFDQMPAKNVVSWTTMVLGYARNGLID 210

Query: 203 SARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVK 262
            AR +F+ MP  E+N ISW +++  Y         A ++F +MP+R+L SWN+M+ GC+ 
Sbjct: 211 QARSVFNQMP--EKNTISWTAMMKSYVD-NGRTDEALKLFHEMPQRNLYSWNTMISGCLD 267

Query: 263 CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGY 322
             ++++A  LF  MP R+ VSW  M+ G A+ G   +AR  FD+MP +D+ A NAM+  Y
Sbjct: 268 GKRVNEAFKLFHLMPLRNAVSWTIMVSGLARNGFTKLAREYFDQMPNKDIAAWNAMITAY 327

Query: 323 VRNGYSMKALEIFD----------NMQCELY--------------------LHPDDASLV 352
           V     ++A E+F+          N   + Y                    + P++ ++ 
Sbjct: 328 VDECLIVEASELFNLMTERNIVTWNAMIDGYARHRPDGEAMKHLILMLRSCIRPNETTMT 387

Query: 353 IVLSAIAQLGHIDKGVAIHRYLEKD-QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED 411
           I+L++   +  + +  A+   +  + + SL+     ALI MYS+ G I ++   FE ++ 
Sbjct: 388 IILTSCWGMLELMQAHALAIVVGCECETSLSN----ALITMYSRIGDISSSRIAFESLKA 443

Query: 412 GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC 471
             V  W AM+     HG G+ A  +   M +   +PD+ITF G+L+AC+HAGLVK+G   
Sbjct: 444 KDVVSWTAMLLAFTYHGHGDHALHVFGHMLKSGTKPDEITFVGVLSACSHAGLVKKGQKL 503

Query: 472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP-MEPNDVIWRTLLSACRNY 530
           F+ M R + LEP  +HY C+VDILGRAG +  A +++  MP  E +  +   LL ACR +
Sbjct: 504 FDSMSRAYGLEPRAEHYSCLVDILGRAGQVHEAMDVVWKMPECERDGAVLGALLGACRLH 563

Query: 531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSW 590
            N+ + + + + LI +  ++S  YVLL+N+FA  G W++   VR  MK+RN++K+PG S 
Sbjct: 564 GNVEMADYIGQKLIELQPNSSGGYVLLANVFAARGNWDEFAEVRKKMKDRNVRKVPGFSQ 623

Query: 591 IELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTP 623
           IE++G  H FF  DKS  QV +IY +L     P
Sbjct: 624 IEVKGKCHAFFAGDKSHPQVEEIYELLREKLLP 656



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 126/411 (30%), Positives = 207/411 (50%), Gaps = 60/411 (14%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           D++  N  IS   RCG +  AR+LFD+M   D+VSY +MI  Y+K+  +  A +LF +MP
Sbjct: 68  DIYNCNIKISQLGRCGNVRGARKLFDEMPHHDNVSYTAMITAYLKNNELRKAEKLFQTMP 127

Query: 213 IRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQA 271
             +R +++ +++++GYA  K+GL   A ++F+ M + ++ SW S++ G  + G++  A  
Sbjct: 128 --DRTIVAESAMIDGYA--KAGLMDSAQKVFDAMIDTNVFSWTSLISGYFRDGQVAKACQ 183

Query: 272 LFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKA 331
           LFD+MP ++VVSW  M+ GYA+ G +D AR +F++MP+++ ++  AMM  YV NG + +A
Sbjct: 184 LFDQMPAKNVVSWTTMVLGYARNGLIDQARSVFNQMPEKNTISWTAMMKSYVDNGRTDEA 243

Query: 332 LEIFDNM-QCELY-----------------------LHP--DDASLVIVLSAIAQLGHID 365
           L++F  M Q  LY                       L P  +  S  I++S +A+ G   
Sbjct: 244 LKLFHEMPQRNLYSWNTMISGCLDGKRVNEAFKLFHLMPLRNAVSWTIMVSGLARNGFTK 303

Query: 366 KGVAIHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
                   +  KD  + N     A+I  Y     I  A ++F  + + ++  WNAMI+G 
Sbjct: 304 LAREYFDQMPNKDIAAWN-----AMITAYVDECLIVEASELFNLMTERNIVTWNAMIDGY 358

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC--------AHAGLVKEGLLCFELMR 476
           A H     A   L+ M R  I P++ T T +L +C        AHA  +  G  C     
Sbjct: 359 ARHRPDGEAMKHLILMLRSCIRPNETTMTIILTSCWGMLELMQAHALAIVVGCEC----- 413

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSA 526
                  E      ++ +  R G I ++R   E   ++  DV+ W  +L A
Sbjct: 414 -------ETSLSNALITMYSRIGDISSSRIAFES--LKAKDVVSWTAMLLA 455



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 119/467 (25%), Positives = 218/467 (46%), Gaps = 51/467 (10%)

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQI 241
           + D  + N  I    + GN+  AR+LFD MP  +   +S+ +++  Y +  + L+ A ++
Sbjct: 66  VLDIYNCNIKISQLGRCGNVRGARKLFDEMPHHDN--VSYTAMITAYLK-NNELRKAEKL 122

Query: 242 FEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIAR 301
           F+ MP+R +++ ++M+ G  K G MD AQ +FD M   +V SW ++I GY + G+V  A 
Sbjct: 123 FQTMPDRTIVAESAMIDGYAKAGLMDSAQKVFDAMIDTNVFSWTSLISGYFRDGQVAKAC 182

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
           +LFD+MP ++VV+   M+ GY RNG   +A  +F+ M        +  S   ++ +    
Sbjct: 183 QLFDQMPAKNVVSWTTMVLGYARNGLIDQARSVFNQMP-----EKNTISWTAMMKSYVDN 237

Query: 362 GHIDKGVAI-HRYLEKDQFSLNGKHGVALIDMYSKC---GSIENAIKVFEQIEDGSVDHW 417
           G  D+ + + H   +++ +S N         M S C     +  A K+F  +   +   W
Sbjct: 238 GRTDEALKLFHEMPQRNLYSWN--------TMISGCLDGKRVNEAFKLFHLMPLRNAVSW 289

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
             M++GLA +G  +LA +   +M    I   +   T  ++ C    L+ E    F LM  
Sbjct: 290 TIMVSGLARNGFTKLAREYFDQMPNKDIAAWNAMITAYVDEC----LIVEASELFNLM-- 343

Query: 478 IHKLEPELQHYGCMVDILGRAGHI---EAARNLIEDMP--MEPNDVIWRTLLSACRNYEN 532
               E  +  +  M+D  G A H    EA ++LI  +   + PN+     +L++C     
Sbjct: 344 ---TERNIVTWNAMID--GYARHRPDGEAMKHLILMLRSCIRPNETTMTIILTSCWGMLE 398

Query: 533 LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           L     +A  ++G +   S S  L++ M++ +G  + +R     +K +++      SW  
Sbjct: 399 LMQAHALAI-VVGCECETSLSNALIT-MYSRIGDISSSRIAFESLKAKDV-----VSWTA 451

Query: 593 LEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVA-----TSCTHYG 634
           +   +  F         +    +ML +   PD +      ++C+H G
Sbjct: 452 M---LLAFTYHGHGDHALHVFGHMLKSGTKPDEITFVGVLSACSHAG 495



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 178/379 (46%), Gaps = 26/379 (6%)

Query: 64  LTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSAS 123
           L + AR +F +      +K+   W A++K+Y       EAL +F  M    +    +S +
Sbjct: 208 LIDQARSVFNQM----PEKNTISWTAMMKSYVDNGRTDEALKLFHEMPQRNL----YSWN 259

Query: 124 LVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183
            ++  C     + E  ++  L+       +      ++S   R G+ + AR+ FD+M  +
Sbjct: 260 TMISGCLDGKRVNEAFKLFHLMPL----RNAVSWTIMVSGLARNGFTKLAREYFDQMPNK 315

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK---SGLQFAWQ 240
           D  ++N+MI  YV    I  A ELF+ M   ERN+++WN++++GYA+ +     ++    
Sbjct: 316 DIAAWNAMITAYVDECLIVEASELFNLMT--ERNIVTWNAMIDGYARHRPDGEAMKHLIL 373

Query: 241 IFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN-MIDGYAKLGRVDI 299
           +       +  +   +L  C    ++  A AL   +      S +N +I  Y+++G +  
Sbjct: 374 MLRSCIRPNETTMTIILTSCWGMLELMQAHALAIVVGCECETSLSNALITMYSRIGDISS 433

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           +R  F+ +  +DVV+  AM+  +  +G+   AL +F +M  +    PD+ + V VLSA +
Sbjct: 434 SRIAFESLKAKDVVSWTAMLLAFTYHGHGDHALHVFGHM-LKSGTKPDEITFVGVLSACS 492

Query: 360 QLGHIDKGVAIHRYLEKDQ-FSLNGKHGVALIDMYSKCGSIENAIKVFEQI----EDGSV 414
             G + KG  +   + +        +H   L+D+  + G +  A+ V  ++     DG+V
Sbjct: 493 HAGLVKKGQKLFDSMSRAYGLEPRAEHYSCLVDILGRAGQVHEAMDVVWKMPECERDGAV 552

Query: 415 DHWNAMINGLAIHGLGELA 433
               A++    +HG  E+A
Sbjct: 553 --LGALLGACRLHGNVEMA 569



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 13/197 (6%)

Query: 12  NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
           N T  T++L   C  + ++ Q HA  I  G    T L+  L+  +S          +R  
Sbjct: 382 NETTMTIILT-SCWGMLELMQAHALAIVVGCECETSLSNALITMYSR---IGDISSSRIA 437

Query: 72  FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
           F    A    KD   W A++  +++      AL +F  ML +G   D+ +   VL ACS 
Sbjct: 438 FESLKA----KDVVSWTAMLLAFTYHGHGDHALHVFGHMLKSGTKPDEITFVGVLSACSH 493

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQ--NCLISLYVRCGYLEFARQLFDKMG--IRDSVS 187
            GL+++G ++   + + A+G +   +  +CL+ +  R G +  A  +  KM    RD   
Sbjct: 494 AGLVKKGQKLFDSMSR-AYGLEPRAEHYSCLVDILGRAGQVHEAMDVVWKMPECERDGAV 552

Query: 188 YNSMIDGYVKSGNIESA 204
             +++      GN+E A
Sbjct: 553 LGALLGACRLHGNVEMA 569


>gi|357138593|ref|XP_003570875.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 664

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 191/566 (33%), Positives = 297/566 (52%), Gaps = 39/566 (6%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           ++P  W A++  Y+      EA  +F  M D  V     S + ++    R G++E   ++
Sbjct: 103 RNPVSWAALLTGYARCGRVAEARELFDRMPDRNV----VSWNAMMSGYLRNGMVERAREL 158

Query: 142 HGLL------------------RKVAFGSDLF---------LQNCLISLYVRCGYLEFAR 174
             ++                  R++    +LF         + N L+S YV    L+ A 
Sbjct: 159 FDMMPSRNDVSWLTMISGYIKKRRLREARELFDLSPSHPTSVCNALLSGYVALSCLKDAE 218

Query: 175 QLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG 234
           +LF +M  RD VS+N MI GY ++G ++ A+ LFD MP  +++ ISW +V+ GY Q    
Sbjct: 219 ELFGRMQRRDPVSWNVMITGYARAGRMQVAQSLFDEMP--QKDTISWTAVMRGYLQ-NGD 275

Query: 235 LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKL 294
           +  +W++F+ +P+RD+++WN+M+ G V+  ++DDA  LF +MP+RD+VSW  ++ G+ + 
Sbjct: 276 VDASWKVFQDIPDRDVVAWNTMMGGFVQSERLDDALRLFAEMPERDLVSWNTILQGHVQQ 335

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
           G +  A   F  MP++D  + N ++ G+   G    AL +   M     L PD+A+L +V
Sbjct: 336 GDMATANTWFRGMPEKDETSWNTLISGHKDEG----ALALLSEM-IRGGLRPDEATLSVV 390

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
           +S  A L  +  G  +H Y  K  F  +     +LI MYSKCG I  A +VF+ +     
Sbjct: 391 ISICASLVALGYGKMVHLYAVKTGFEHDALVMSSLISMYSKCGLIAEASQVFKLLVQRDT 450

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
             WNAMI   A HG+   A  L  +M +    PD  TF  +L+ACAH G + EG   F  
Sbjct: 451 VTWNAMIATYAYHGMASEALKLFNKMTKDGFRPDHATFLSVLSACAHKGDLYEGCRYFRS 510

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534
           M+    L P   HY CMVD+LGR G I  A +    +P +     W TL SAC  + ++ 
Sbjct: 511 MQEDWNLTPRSDHYSCMVDLLGRLGFIYQAYDFTRKIPSDLQINAWETLFSACNAHGDVQ 570

Query: 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           +GE +AK ++    S+   Y LL+N++A   MW+ A  VR +MKE+ LKK  GCSW+EL+
Sbjct: 571 LGEVIAKDVLQARPSDGGMYTLLANIYASKEMWSSAASVRGVMKEQGLKKETGCSWVELK 630

Query: 595 GVVHEFFVRDKSRLQVRDIYYMLDNM 620
           G V  F   D +   +  I   +DN+
Sbjct: 631 GEVVSFSSNDNAHPLIEWICQEVDNL 656



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 207/411 (50%), Gaps = 61/411 (14%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           ++F  NC+IS  V    L  AR++FD M +R+ VS+ +++ GY + G +  ARELFD MP
Sbjct: 73  NVFTWNCMISGLVGNRMLADARRVFDAMPVRNPVSWAALLTGYARCGRVAEARELFDRMP 132

Query: 213 IRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLISW------------------ 253
             +RN++SWN++++GY  L++G+ + A ++F+ MP R+ +SW                  
Sbjct: 133 --DRNVVSWNAMMSGY--LRNGMVERARELFDMMPSRNDVSWLTMISGYIKKRRLREARE 188

Query: 254 -------------NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIA 300
                        N++L G V    + DA+ LF +M +RD VSW  MI GYA+ GR+ +A
Sbjct: 189 LFDLSPSHPTSVCNALLSGYVALSCLKDAEELFGRMQRRDPVSWNVMITGYARAGRMQVA 248

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
           + LFDEMP++D ++  A+M GY++NG    + ++F ++        D  +   ++    Q
Sbjct: 249 QSLFDEMPQKDTISWTAVMRGYLQNGDVDASWKVFQDIP-----DRDVVAWNTMMGGFVQ 303

Query: 361 LGHIDKGVAIHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
              +D  + +   + E+D  S N      ++  + + G +  A   F  + +     WN 
Sbjct: 304 SERLDDALRLFAEMPERDLVSWN-----TILQGHVQQGDMATANTWFRGMPEKDETSWNT 358

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           +I+G    G    A  LL EM R  + PD+ T + +++ C  A LV  G   +  M  ++
Sbjct: 359 LISGHKDEG----ALALLSEMIRGGLRPDEATLSVVISIC--ASLVALG---YGKMVHLY 409

Query: 480 KLEPELQH----YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
            ++   +H       ++ +  + G I  A  + + + ++ + V W  +++ 
Sbjct: 410 AVKTGFEHDALVMSSLISMYSKCGLIAEASQVFK-LLVQRDTVTWNAMIAT 459



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 127/436 (29%), Positives = 217/436 (49%), Gaps = 35/436 (8%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           D+F  N +I+ ++R G +  AR++FD+M  R+  ++N MI G V +  +  AR +FD+MP
Sbjct: 42  DIFQWNAVITAHLRAGRVAAARRVFDEMPERNVFTWNCMISGLVGNRMLADARRVFDAMP 101

Query: 213 IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
           +  RN +SW ++L GYA+     + A ++F++MP+R+++SWN+M+ G ++ G ++ A+ L
Sbjct: 102 V--RNPVSWAALLTGYARCGRVAE-ARELFDRMPDRNVVSWNAMMSGYLRNGMVERAREL 158

Query: 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
           FD MP R+ VSW  MI GY K  R+  AR LFD  P      CNA++ GYV       A 
Sbjct: 159 FDMMPSRNDVSWLTMISGYIKKRRLREARELFDLSPSHPTSVCNALLSGYVALSCLKDAE 218

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL-EKDQFSLNGKHGVALID 391
           E+F  MQ       D  S  ++++  A+ G +    ++   + +KD  S       A++ 
Sbjct: 219 ELFGRMQ-----RRDPVSWNVMITGYARAGRMQVAQSLFDEMPQKDTISW-----TAVMR 268

Query: 392 MYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDIT 451
            Y + G ++ + KVF+ I D  V  WN M+ G       + A  L  EM     E D ++
Sbjct: 269 GYLQNGDVDASWKVFQDIPDRDVVAWNTMMGGFVQSERLDDALRLFAEMP----ERDLVS 324

Query: 452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM 511
           +  +L      G +      F  M       PE         I G     E A  L+ +M
Sbjct: 325 WNTILQGHVQQGDMATANTWFRGM-------PEKDETSWNTLISGHKD--EGALALLSEM 375

Query: 512 ---PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS---NMFAGLG 565
               + P++     ++S C +   L  G+ V  HL  + +      +++S   +M++  G
Sbjct: 376 IRGGLRPDEATLSVVISICASLVALGYGKMV--HLYAVKTGFEHDALVMSSLISMYSKCG 433

Query: 566 MWNDARRVRSMMKERN 581
           +  +A +V  ++ +R+
Sbjct: 434 LIAEASQVFKLLVQRD 449



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 179/399 (44%), Gaps = 84/399 (21%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           +++DP  WN +I  Y+     + A  +F    D     D  S + V++            
Sbjct: 225 QRRDPVSWNVMITGYARAGRMQVAQSLF----DEMPQKDTISWTAVMRG----------- 269

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
                          +LQN         G ++ + ++F  +  RD V++N+M+ G+V+S 
Sbjct: 270 ---------------YLQN---------GDVDASWKVFQDIPDRDVVAWNTMMGGFVQSE 305

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
            ++ A  LF  MP  ER+L+SWN++L G+ Q +  +  A   F  MPE+D  SWN+++ G
Sbjct: 306 RLDDALRLFAEMP--ERDLVSWNTILQGHVQ-QGDMATANTWFRGMPEKDETSWNTLISG 362

Query: 260 ------------CVKCGKMDDAQAL--------------FDKMP---------KRDVVSW 284
                        ++ G   D   L              + KM          + D +  
Sbjct: 363 HKDEGALALLSEMIRGGLRPDEATLSVVISICASLVALGYGKMVHLYAVKTGFEHDALVM 422

Query: 285 ANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYL 344
           +++I  Y+K G +  A ++F  + +RD V  NAM+  Y  +G + +AL++F+ M  + + 
Sbjct: 423 SSLISMYSKCGLIAEASQVFKLLVQRDTVTWNAMIATYAYHGMASEALKLFNKMTKDGF- 481

Query: 345 HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD-QFSLNGKHGVALIDMYSKCGSIENAI 403
            PD A+ + VLSA A  G + +G    R +++D   +    H   ++D+  + G I  A 
Sbjct: 482 RPDHATFLSVLSACAHKGDLYEGCRYFRSMQEDWNLTPRSDHYSCMVDLLGRLGFIYQAY 541

Query: 404 KVFEQI-EDGSVDHWNAMINGLAIHG---LGE-LAFDLL 437
               +I  D  ++ W  + +    HG   LGE +A D+L
Sbjct: 542 DFTRKIPSDLQINAWETLFSACNAHGDVQLGEVIAKDVL 580



 Score = 46.6 bits (109), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 16/157 (10%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           +H   + TGF  +  + + L++ +S   C  + E ++   FK      ++D   WNA+I 
Sbjct: 406 VHLYAVKTGFEHDALVMSSLISMYSK--CGLIAEASQ--VFKLLV---QRDTVTWNAMIA 458

Query: 93  TYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRK---VA 149
           TY++     EAL +F  M  +G   D  +   VL AC+  G + EG +    +++   + 
Sbjct: 459 TYAYHGMASEALKLFNKMTKDGFRPDHATFLSVLSACAHKGDLYEGCRYFRSMQEDWNLT 518

Query: 150 FGSDLFLQNCLISLYVRCGYL----EFARQLFDKMGI 182
             SD +  +C++ L  R G++    +F R++   + I
Sbjct: 519 PRSDHY--SCMVDLLGRLGFIYQAYDFTRKIPSDLQI 553


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 183/493 (37%), Positives = 287/493 (58%), Gaps = 14/493 (2%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +LK C     I E  +IH  + K +     FL   ++ +    G  E+A  LF  +   +
Sbjct: 20  ILKDCPN---IVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPN 76

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSM---PIRERNLI----SWNSVLNGYAQLKS---G 234
           +  YN+MI  Y  +     A  ++  M   P  E  +     ++  V+   A L     G
Sbjct: 77  AFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLG 136

Query: 235 LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKL 294
            Q    +F+   + + +  NS++   VKC  +DDA  +F++M +RD VSW  +I G+ +L
Sbjct: 137 KQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRL 196

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
           G++  AR +F+EM  + + +  A++ GY R G    ALE F  MQ  + + PD+ SLV V
Sbjct: 197 GQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQM-VGIEPDEISLVSV 255

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
           L   AQLG ++ G  IH Y +K  F  N     ALI+MY+KCGSI+   ++F+Q+++  V
Sbjct: 256 LPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDV 315

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
             W+ MI GLA HG    A +L  EM++  IEP  ITF GLL ACAHAGL+ EGL  FE 
Sbjct: 316 ISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFES 375

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534
           M+R + +EP ++HYGC+V++LG +G ++ A  L++ MP +P+  IW +LLS+CR++ NL 
Sbjct: 376 MKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLK 435

Query: 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           +     +HL+ ++ +++ +YVLLSN++A LG W+   R+R +M+ +++KK PGCS IE++
Sbjct: 436 IAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVD 495

Query: 595 GVVHEFFVRDKSR 607
            +V EF   D S+
Sbjct: 496 NMVQEFASGDDSK 508



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 137/481 (28%), Positives = 249/481 (51%), Gaps = 68/481 (14%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPL--TEFARYIFFKYHA 77
           +L+ C  + ++ +IHA ++     +++ L TK+V       C     TE+A  +F     
Sbjct: 20  ILKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMV-----DVCNHYGETEYANLLF----- 69

Query: 78  FREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLML-----DNGVSVDKFSASLVLKACS 130
            +   DP  FL+NA+I+ Y H      A+ ++  ML     +N +  DKF+   V+K+C+
Sbjct: 70  -KGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCA 128

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
            L   + G Q+HG + K    S+  ++N L+ +YV+C  L+ A ++F++M  RD+VS+N+
Sbjct: 129 GLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNT 188

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP---- 246
           +I G+V+ G +  AR +F+ M  +++ + SW ++++GYA++      A + F +M     
Sbjct: 189 LISGHVRLGQMRRARAIFEEM--QDKTIFSWTAIVSGYARIGCYAD-ALEFFRRMQMVGI 245

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARR 302
           E D IS  S+L  C + G ++  + +     K    R++     +I+ YAK G +D  RR
Sbjct: 246 EPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRR 305

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           LFD+M +RDV++ + M+ G   +G + +A+E+F  MQ +  + P   + V +L+A A  G
Sbjct: 306 LFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQ-KAKIEPSIITFVGLLTACAHAG 364

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
            +++G+   RY E  +   N                          IE G V+H+  ++N
Sbjct: 365 LLNEGL---RYFESMKRDYN--------------------------IEPG-VEHYGCLVN 394

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
            L + G  + A +L+ +M R   +PD   +  LL++C   G +K  ++    M  + +LE
Sbjct: 395 LLGLSGRLDQALELVKKMPR---KPDSPIWGSLLSSCRSHGNLKIAVIA---MEHLLELE 448

Query: 483 P 483
           P
Sbjct: 449 P 449


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 213/637 (33%), Positives = 328/637 (51%), Gaps = 43/637 (6%)

Query: 20   LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF------- 72
            LLR    L      HAR + + F+  T L   LV++++     P    AR +F       
Sbjct: 769  LLRSAPNLPAARAAHARALKSPFVAETFLLNTLVSAYARLGRLP---DARRVFDEIPHPN 825

Query: 73   -FKYHA-----------------FREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLD 112
             F Y+A                 F    DP    +NA+I   +      +AL+    M  
Sbjct: 826  TFSYNALLSAHARLGRPADARALFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHA 885

Query: 113  NGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF 172
            +   ++ +S +  L AC+       G+Q+H L+ K     D+++ + L+ +Y +C + E 
Sbjct: 886  DDFVLNAYSFASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEE 945

Query: 173  ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM-----PIRERNLISWNSVLNG 227
            AR++F+ M  R+ VS+NS+I  Y ++G +  A  LF SM        E  L S  S   G
Sbjct: 946  ARRVFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAG 1005

Query: 228  YAQLKSGLQFAWQIFEKMPER-DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN 286
             A  + G Q   ++ +    R D++  N+++    KCG+   A+ +FD+M  R VVS  +
Sbjct: 1006 LAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETS 1065

Query: 287  MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP 346
            +I GYA+   V+ A+ +F +M +++V+A N ++  Y +NG   +AL +F  ++ E  + P
Sbjct: 1066 LITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRE-SVWP 1124

Query: 347  DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN-GKH-----GVALIDMYSKCGSIE 400
               +   VL+A   +  +  G   H ++ K+ F  + G       G +L+DMY K GSI+
Sbjct: 1125 THYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSID 1184

Query: 401  NAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460
            +  KVFE++       WNAMI G A +G  + A  L   M      PD +T  G+L+AC 
Sbjct: 1185 DGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACG 1244

Query: 461  HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIW 520
            H+GLV+EG   F  M   H + P   HY CM+D+LGRAGH++    LI++M MEP+ V+W
Sbjct: 1245 HSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLW 1304

Query: 521  RTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580
             +LL +CR ++N+ +GE  A  L  +D  NS  YVLLSNM+A LG W D  RVRS MK R
Sbjct: 1305 ASLLGSCRLHKNVEMGEWAAGKLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHR 1364

Query: 581  NLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
             + K PGCSWIE+   V  F  RD       +I+ +L
Sbjct: 1365 GVSKQPGCSWIEIGRKVSVFLARDNGHPCKNEIHAIL 1401



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 163/545 (29%), Positives = 268/545 (49%), Gaps = 26/545 (4%)

Query: 9   QPCNSTQSTLL-LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF 67
           +P ++T +++L    +C  L    Q+H  +    F  N  L T LV  + +  C  L + 
Sbjct: 148 RPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGN--CFLLADA 205

Query: 68  ARYIFFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
            R       AF +  +P    WN I++ Y        A+ MF  ML  GV    ++ S  
Sbjct: 206 RR-------AFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHA 258

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           + AC     +EEG  IH  + +  +   + +++ ++ +Y +CG ++ A+ LF+   ++D 
Sbjct: 259 VLACRDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDM 318

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQIF 242
           V   S++ G    G I  A+ +F+ M  +ERNL+SWN++L GY +   L   L    Q+ 
Sbjct: 319 VMSTSIVSGLASCGRIADAKRVFEGM--KERNLVSWNAMLTGYIRSMDLTGALLLFQQMR 376

Query: 243 EKMPERDLISWNSMLHGC---VKCGKMDDAQALFDKMPKRDVVSWAN-MIDGYAKLGRVD 298
           ++  E D I+  S+L  C   +  GK ++  A   K          N ++  Y+K G + 
Sbjct: 377 QETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLR 436

Query: 299 IARRL--FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
            A RL  F+   +RD  + N+++ GY R+  S  AL     MQ E+   P+ ++    L+
Sbjct: 437 SAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQSEVT--PNQSTFSSALA 494

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
           A A +  + +G+ IH Y+ +  + ++      LIDMY KC   + +I++FE      V  
Sbjct: 495 ACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVIL 554

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           WN+MI G A  G GE   DL  EM++  I+ D +TF G L +C   G V+ G   F LM 
Sbjct: 555 WNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMM 614

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
               + P ++HY CM+++LG+ G +    + +E MP EP   +W  +   CR Y N  +G
Sbjct: 615 D-ESIIPRIEHYECMIELLGKHGCMVELEDFVEHMPFEPTTAMWLRIFDCCREYGNRKLG 673

Query: 537 EPVAK 541
           E  AK
Sbjct: 674 ERAAK 678



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 129/454 (28%), Positives = 226/454 (49%), Gaps = 13/454 (2%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D   WNAII   S    P EAL +F  M   G+     + + VL  C+    +    Q+
Sbjct: 114 RDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVLSCCAECLDLCGARQL 173

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           HG + K  F S++ L   L+ +Y  C  L  AR+ FD +   +++S+N ++  Y  +G  
Sbjct: 174 HGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYHLAGMG 233

Query: 202 ESARELFDSM---PIRERNLISWNSVL--NGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
           + A ++F  M    +R       ++VL       L+ G      +     E  +   +S+
Sbjct: 234 DMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVRSSV 293

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
           +    KCG MD AQ+LF+  P +D+V   +++ G A  GR+  A+R+F+ M +R++V+ N
Sbjct: 294 VDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWN 353

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
           AM+ GY+R+     AL +F  M+ E     D  +L  VLSA   +  I KG  +H +  K
Sbjct: 354 AMLTGYIRSMDLTGALLLFQQMRQETR-EFDAITLGSVLSACTGILDIGKGEEVHAFAIK 412

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIK--VFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
             F  +     AL+ MYSKCG + +A +  +FE   +     WN++I+G   H + E A 
Sbjct: 413 CGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAAL 472

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM-RRIHKLEPELQHYGCMVD 493
             L +M+   + P+  TF+  L ACA+  L+K+G+     M R+ ++++  L+    ++D
Sbjct: 473 YALTKMQS-EVTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILR--SVLID 529

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSAC 527
           +  +    + +  + E  P   + ++W +++  C
Sbjct: 530 MYCKCRQFDYSIRIFEARPSR-DVILWNSMIFGC 562



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 131/295 (44%), Gaps = 37/295 (12%)

Query: 288 IDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD 347
           I+  A  G V  AR LFD MP RD  + NA++    R G+  +AL +F NM   L + P 
Sbjct: 92  IESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMN-SLGIRPK 150

Query: 348 DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFE 407
           DA++  VLS  A+   +     +H ++ K  F  N   G AL+D+Y  C  + +A + F+
Sbjct: 151 DATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFD 210

Query: 408 QIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKE 467
            I + +   WN ++    + G+G++A D+   M    + P   T +  + AC     ++E
Sbjct: 211 DILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEE 270

Query: 468 GLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSAC 527
           G      + R H  E  +     +VD+  + G ++AA++L    PM+             
Sbjct: 271 GRCIHAFVLR-HGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMK------------- 316

Query: 528 RNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
                              D   S+S V   +  A  G   DA+RV   MKERNL
Sbjct: 317 -------------------DMVMSTSIV---SGLASCGRIADAKRVFEGMKERNL 349



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 99/430 (23%), Positives = 182/430 (42%), Gaps = 41/430 (9%)

Query: 155 FLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELF---DSM 211
           FL N  I     CG +  AR+LFD M +RD  S+N++I    ++G+   A  LF   +S+
Sbjct: 86  FLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSL 145

Query: 212 PIRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDD 268
            IR ++  +  SVL+  A+   L    Q    I ++  + ++I   +++     C  + D
Sbjct: 146 GIRPKD-ATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLAD 204

Query: 269 AQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYS 328
           A+  FD + + + +SW  ++  Y   G  D+A  +F  M    V      +   V     
Sbjct: 205 ARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRD 264

Query: 329 MKALEIFDNMQCELYLHPDDASLVI---VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
             ALE    +   +  H  +  + +   V+   A+ G +D   ++          ++   
Sbjct: 265 NNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMS--- 321

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
             +++   + CG I +A +VFE +++ ++  WNAM+ G         A  L  +M + + 
Sbjct: 322 -TSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETR 380

Query: 446 EPDDITFTGLLNACA-----------HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
           E D IT   +L+AC            HA  +K G     +++              +V +
Sbjct: 381 EFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILK------------NALVRM 428

Query: 495 LGRAGHIEAA-RNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS 553
             + G + +A R L+ +M  E +   W +L+S    YE  ++ E     L  M S  + +
Sbjct: 429 YSKCGCLRSAERLLLFEMGSERDSYSWNSLIS---GYERHSMSEAALYALTKMQSEVTPN 485

Query: 554 YVLLSNMFAG 563
               S+  A 
Sbjct: 486 QSTFSSALAA 495


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 207/681 (30%), Positives = 335/681 (49%), Gaps = 87/681 (12%)

Query: 14  TQSTLLLLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY 70
           T   L LL+ C   K L     IH ++++ G   N  L   L+  + S     L + A+ 
Sbjct: 3   TTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFS---CHLFQSAKL 59

Query: 71  IFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLD-NGVSVDKFSASLVLKAC 129
           +F          D  LWN ++   +      E L +F  +L    +  D F+   VLKAC
Sbjct: 60  VF---QTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKAC 116

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
           S LG +  G  +H  + K  F  D+ + +  + +Y +C   E A +LFD+M  RD  S+N
Sbjct: 117 SGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWN 176

Query: 190 SMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQL--------------KS 233
           ++I  Y + G  E A ELF+ M +   + + ++  +V++  A+L              +S
Sbjct: 177 NVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRS 236

Query: 234 G--------------------LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALF 273
           G                    L+ A ++FE++  ++++SWNSM+ G    G       LF
Sbjct: 237 GFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELF 296

Query: 274 DKMPKR---------------------------------------DVVSWANMIDGYAKL 294
            +M +                                        D+   +++ID Y K 
Sbjct: 297 RRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKC 356

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
           G +  A  +F  MPK +VV+ N M+ GYV+ G  ++AL IF +M+ +  + PD  +   V
Sbjct: 357 GNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMR-KAGVKPDAITFTSV 415

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
           L A +QL  ++KG  IH ++ + +  +N     AL+DMY+KCG+++ A+ +F Q+ +   
Sbjct: 416 LPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDF 475

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
             W +MI     HG    A  L  +M++   +PD +TF  +L+AC+HAGLV EG   F  
Sbjct: 476 VSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQ 535

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV-IWRTLLSACRNYENL 533
           M   +  +P ++HY C++D+LGR G +  A  +++  P    DV +  TL SAC  ++ L
Sbjct: 536 MIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKL 595

Query: 534 NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
           ++GE + + LI  D  + S+Y++LSNM+A +  W++ R+VR  +KE  LKK PGCSWIE+
Sbjct: 596 DLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEV 655

Query: 594 EGVVHEFFVRDKSRLQVRDIY 614
              +H F V DKS  Q   IY
Sbjct: 656 GKRIHPFVVEDKSHPQADMIY 676


>gi|225444117|ref|XP_002266487.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 553

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 182/516 (35%), Positives = 303/516 (58%), Gaps = 12/516 (2%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNG-VSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
           WN +I+ +S    P  A++++   +    V  DK++   +LKAC R+G + +G ++H  +
Sbjct: 41  WNCLIRAFSRSPTPITAILIYNHFIKGRFVFPDKYTYPAMLKACWRMGSLSKGKEVHAHV 100

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
            K    SD+++ N L+ LY   G +  AR+LFD M  RD  S+N+++  Y  + N     
Sbjct: 101 TKTGLDSDVYVGNALLHLYGSTGQVTDARRLFDGMPHRDLASWNTLLGAY--NDNAVEVL 158

Query: 206 ELFDSMPIRE--RNLISWNSVLNGYAQLKSGLQFAWQIFE---KMPERDLISWNSMLHGC 260
            LF  M       + IS   V +   ++  G +F  ++     K+  R  +S ++ L G 
Sbjct: 159 VLFKRMMYEGIGGDHISMVIVFSACGKI-GGTEFGKEVHGYVIKVGIRPALSLSNALLGV 217

Query: 261 -VKCGKMDDAQALFDKMPK-RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
             KCG+MD AQ+LF +M   RDVVS   + +GY  +G +D+AR +FD+M  +D+V+ N+M
Sbjct: 218 YTKCGEMDAAQSLFVEMAAMRDVVSHTILFNGYVDMGSIDLARGIFDQMSVKDLVSWNSM 277

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
           +  YV+  +  KA+E+F  M+ E+ + PD+ ++V VL+A A L  +  G   HR++ ++ 
Sbjct: 278 IHAYVKAKHPKKAIELFRKMENEM-VEPDETTMVSVLAACASLADLQNGRLAHRFIIQNN 336

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
              +   G ALIDMY+KCGS+E A+  F +++   V  W   I GLA HG G+ A  L  
Sbjct: 337 PRQDLFVGTALIDMYAKCGSLEEAMVTFYKMDSRDVFTWTTAIEGLANHGHGDKALSLFT 396

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
           EME+  I+P+  TF  +L AC+ +GLVKEG L F+ M   ++++P+++H GC++DIL RA
Sbjct: 397 EMEKQGIKPNQATFVSVLMACSRSGLVKEGCLLFKRMVEAYQIQPKIEHLGCLLDILSRA 456

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           G +  A   I+ MP +   +  +TLLSAC N+   ++GE +A  L  + S + ++++LLS
Sbjct: 457 GLLHQAEEFIKLMPPKEKIIANKTLLSACMNHLEYDLGEKIANGLTELSSQSHATHILLS 516

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           N +A  G W +  + R +MKE +++K+PG S ++++
Sbjct: 517 NFYALAGQWAEVAKTRRVMKEIDIRKVPGISSVDIK 552



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 122/445 (27%), Positives = 205/445 (46%), Gaps = 78/445 (17%)

Query: 31  NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF--------ARYIF---FKY---- 75
           +Q+  + ITT FI  T     L+ +FS SP TP+T           R++F   + Y    
Sbjct: 23  DQVLTQTITTAFIHATPTWNCLIRAFSRSP-TPITAILIYNHFIKGRFVFPDKYTYPAML 81

Query: 76  ---------------HAFREK----KDPFLWNAIIKTY---------------------- 94
                          HA   K     D ++ NA++  Y                      
Sbjct: 82  KACWRMGSLSKGKEVHAHVTKTGLDSDVYVGNALLHLYGSTGQVTDARRLFDGMPHRDLA 141

Query: 95  -------SHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRK 147
                  ++  +  E LV+F  M+  G+  D  S  +V  AC ++G  E G ++HG + K
Sbjct: 142 SWNTLLGAYNDNAVEVLVLFKRMMYEGIGGDHISMVIVFSACGKIGGTEFGKEVHGYVIK 201

Query: 148 VAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM-GIRDSVSYNSMIDGYVKSGNIESARE 206
           V     L L N L+ +Y +CG ++ A+ LF +M  +RD VS+  + +GYV  G+I+ AR 
Sbjct: 202 VGIRPALSLSNALLGVYTKCGEMDAAQSLFVEMAAMRDVVSHTILFNGYVDMGSIDLARG 261

Query: 207 LFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLISWNSMLHGCVK 262
           +FD M +++  L+SWNS+++ Y + K   + A ++F KM     E D  +  S+L  C  
Sbjct: 262 IFDQMSVKD--LVSWNSMIHAYVKAKHPKK-AIELFRKMENEMVEPDETTMVSVLAACAS 318

Query: 263 CGKMDDAQA----LFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
              + + +     +    P++D+     +ID YAK G ++ A   F +M  RDV      
Sbjct: 319 LADLQNGRLAHRFIIQNNPRQDLFVGTALIDMYAKCGSLEEAMVTFYKMDSRDVFTWTTA 378

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG-VAIHRYLEKD 377
           + G   +G+  KAL +F  M+ +  + P+ A+ V VL A ++ G + +G +   R +E  
Sbjct: 379 IEGLANHGHGDKALSLFTEMEKQ-GIKPNQATFVSVLMACSRSGLVKEGCLLFKRMVEAY 437

Query: 378 QFSLNGKHGVALIDMYSKCGSIENA 402
           Q     +H   L+D+ S+ G +  A
Sbjct: 438 QIQPKIEHLGCLLDILSRAGLLHQA 462



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 14/225 (6%)

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
           + AR IF +       KD   WN++I  Y     PK+A+ +F  M +  V  D+ +   V
Sbjct: 257 DLARGIFDQMSV----KDLVSWNSMIHAYVKAKHPKKAIELFRKMENEMVEPDETTMVSV 312

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           L AC+ L  ++ G   H  + +     DLF+   LI +Y +CG LE A   F KM  RD 
Sbjct: 313 LAACASLADLQNGRLAHRFIIQNNPRQDLFVGTALIDMYAKCGSLEEAMVTFYKMDSRDV 372

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGL-QFAWQIF 242
            ++ + I+G    G+ + A  LF  M  +  + N  ++ SVL   A  +SGL +    +F
Sbjct: 373 FTWTTAIEGLANHGHGDKALSLFTEMEKQGIKPNQATFVSVL--MACSRSGLVKEGCLLF 430

Query: 243 EKMPERDLISWNSMLHGCV-----KCGKMDDAQALFDKMPKRDVV 282
           ++M E   I       GC+     + G +  A+     MP ++ +
Sbjct: 431 KRMVEAYQIQPKIEHLGCLLDILSRAGLLHQAEEFIKLMPPKEKI 475



 Score = 46.2 bits (108), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 12/190 (6%)

Query: 8   NQPCNSTQSTLL-LLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTP 63
           N+     ++T++ +L  C +L D+      H  +I     ++  + T L+  ++   C  
Sbjct: 299 NEMVEPDETTMVSVLAACASLADLQNGRLAHRFIIQNNPRQDLFVGTALIDMYAK--CGS 356

Query: 64  LTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSAS 123
           L E A   F+K     + +D F W   I+  ++     +AL +F  M   G+  ++ +  
Sbjct: 357 LEE-AMVTFYKM----DSRDVFTWTTAIEGLANHGHGDKALSLFTEMEKQGIKPNQATFV 411

Query: 124 LVLKACSRLGLIEEG-LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI 182
            VL ACSR GL++EG L    ++        +    CL+ +  R G L  A +    M  
Sbjct: 412 SVLMACSRSGLVKEGCLLFKRMVEAYQIQPKIEHLGCLLDILSRAGLLHQAEEFIKLMPP 471

Query: 183 RDSVSYNSMI 192
           ++ +  N  +
Sbjct: 472 KEKIIANKTL 481


>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 661

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 201/628 (32%), Positives = 330/628 (52%), Gaps = 19/628 (3%)

Query: 6   NYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLT 65
           N N+    T   L LL  C +     Q+HA +  +G   +    ++L+A F +    P  
Sbjct: 29  NTNRNLVVTHPLLALLESCASFPRFLQLHALLTVSGLAAHRFPASRLLA-FCALSTPPRV 87

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
           + A        A     + ++   +++ +     P  A  +F  ++   +  D  +    
Sbjct: 88  DHAA----AILARASAPNAYMLATMMRAFLRARLPSRASALFRRVIRESLPADARTLVFA 143

Query: 126 LKACS---RLGLIEEGLQIHGLLRKVA-FGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
           +KA +          G  +H +  K       + + N L+  Y     L  AR LFD+M 
Sbjct: 144 IKAAASEHEHHSPSGGEGVHCVALKWGHVAQSVLVGNALVHFYANHRSLAHARNLFDEMP 203

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSMPIR---ERNLISWNSVLNGYAQLKSGLQFA 238
            RD VS+ +++DGY + G  + A  +F  M +    + N ++  +V++   Q+   L F 
Sbjct: 204 DRDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGL-LAFG 262

Query: 239 WQIFEKMPE----RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKL 294
             ++  + +    R +   N+++    K G    A+ +FD M  +DV SW  M++ YAK 
Sbjct: 263 RMVYRYVADGGVGRSVNLENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAKC 322

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
           G ++ A RLFD+MP+R+ V+ + M+  Y +     +A+ +F  M  E  + P +A LV V
Sbjct: 323 GDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAM-IEEGVEPINAGLVSV 381

Query: 355 LSAIAQLGHIDKGVAIH-RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
           LSA AQLG +D G  I+  Y+   +  L    G A ID+Y+KCG  + A K+F ++ + +
Sbjct: 382 LSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMAERN 441

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE 473
           V  WN+MI   A+HG  E    L  +++   I PD+ITF GLL+AC+H+GLV EG   F+
Sbjct: 442 VVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEITFLGLLSACSHSGLVSEGRRYFK 501

Query: 474 LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENL 533
            M+ I+ +EP+ +HY CM+D+LG+ G +E A  + + MPME ++  W  LL+ACR Y N+
Sbjct: 502 EMKLIYGIEPKSEHYACMIDLLGKIGLLEEAFEVAKGMPMETDEAGWGALLNACRMYGNV 561

Query: 534 NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
            +GE  A  L+ ++  +S  YVL+S ++A    W+  + +R +M+ER +KK PGCS IE+
Sbjct: 562 EIGEFAADKLVQLNPLDSGIYVLMSQIYASKNKWDQVKILRVLMRERGVKKNPGCSSIEV 621

Query: 594 EGVVHEFFVRDKSRLQVRDIYYMLDNMW 621
           +G  HEF V D S +   DIY  L N++
Sbjct: 622 DGKFHEFLVADVSHVHSEDIYAALKNIY 649


>gi|242082435|ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
 gi|241942336|gb|EES15481.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
          Length = 567

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 184/494 (37%), Positives = 272/494 (55%), Gaps = 36/494 (7%)

Query: 153 DLFLQNCLISLYVRCG--YLEFARQLFDK-MGIRDSVSYNSMIDGYVKSGNIESARELFD 209
           D+   N L++   R G  +L  AR+LFD+ M  RD VS+NS+I G +  G++++A   F 
Sbjct: 45  DVVSWNALLTALWRAGRHHLPAARRLFDEAMPSRDVVSWNSIIAGCLAHGDLDAASAYFA 104

Query: 210 SMPIRERNLISWNSVLNG------------------------YAQLKSGLQF------AW 239
             P  +RN+ +WN++L G                        Y  +  GL        A 
Sbjct: 105 GAP--KRNVATWNAMLAGLLRLGRADDADRLFGEMPKRNVVSYTTMVDGLARRGEVARAR 162

Query: 240 QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDI 299
           ++F+ MP+R+L+SW +M+ G V+ G   +A  LF+ MP+++VV+   MI  Y K G V+ 
Sbjct: 163 EVFDAMPDRNLVSWAAMISGYVENGMFVEATKLFEAMPEKNVVACTAMITSYCKQGDVES 222

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           ARRLFD +  +DV++ N M+ GYV NG+  +A+ +   M  E  + PD A+L+ VL+A +
Sbjct: 223 ARRLFDGIRAKDVISWNTMIAGYVHNGHGEEAMRLHAVMFRE-GVKPDHATLIAVLTACS 281

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
            L  + +G + H    K           AL+ MYSKCG++  +  VF  +    +  WN 
Sbjct: 282 ALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGESELVFINLRTKDIVSWNT 341

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           +I   A HG  +    L  EME   + PDDITF  +L+AC H G V   L  F+LM   +
Sbjct: 342 IIAAYAQHGKYQKVIALFHEMEMTGLIPDDITFLSVLSACGHVGKVDASLKLFDLMSSKY 401

Query: 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPV 539
            + P  +HY C+VDIL RAG +E A + I+DMP+E    +W +LL AC+ + N+ +GE  
Sbjct: 402 AISPRAEHYACIVDILSRAGQLEKASSYIKDMPLEAEKNVWGSLLGACQMHGNVQLGELA 461

Query: 540 AKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHE 599
           AK L+  DS +S  YV+LSN++A  GMW    +VR  MKER +KK PG SW E+   VH 
Sbjct: 462 AKMLVQSDSESSGPYVILSNIYAAAGMWGQVNQVRGQMKERGVKKQPGYSWTEIANEVHM 521

Query: 600 FFVRDKSRLQVRDI 613
           F   D S  ++R I
Sbjct: 522 FVGGDASHPEMRKI 535



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/283 (36%), Positives = 156/283 (55%), Gaps = 15/283 (5%)

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNG-YAQLKSGLQFAWQIF-EKMP 246
           N  I    ++G++ +AR +FD+MP   R+++SWN++L   +   +  L  A ++F E MP
Sbjct: 19  NQRISALARAGDVAAARRVFDAMP--HRDVVSWNALLTALWRAGRHHLPAARRLFDEAMP 76

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
            RD++SWNS++ GC+  G +D A A F   PKR+V +W  M+ G  +LGR D A RLF E
Sbjct: 77  SRDVVSWNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNAMLAGLLRLGRADDADRLFGE 136

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           MPKR+VV+   M+ G  R G   +A E+FD M         D +LV   + I+  G+++ 
Sbjct: 137 MPKRNVVSYTTMVDGLARRGEVARAREVFDAMP--------DRNLVSWAAMIS--GYVEN 186

Query: 367 GVAIHRY-LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
           G+ +    L +     N     A+I  Y K G +E+A ++F+ I    V  WN MI G  
Sbjct: 187 GMFVEATKLFEAMPEKNVVACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYV 246

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
            +G GE A  L   M R  ++PD  T   +L AC+   L+++G
Sbjct: 247 HNGHGEEAMRLHAVMFREGVKPDHATLIAVLTACSALALLRQG 289



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 131/305 (42%), Gaps = 59/305 (19%)

Query: 26  TLNDVNQIHARMITTGFIKNTHL--TTKLVASFSSSP------CTPL---------TEFA 68
            + D N +    + +G+++N      TKL   F + P      CT +          E A
Sbjct: 167 AMPDRNLVSWAAMISGYVENGMFVEATKL---FEAMPEKNVVACTAMITSYCKQGDVESA 223

Query: 69  RYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA 128
           R +F    A    KD   WN +I  Y H    +EA+ +  +M   GV  D  +   VL A
Sbjct: 224 RRLFDGIRA----KDVISWNTMIAGYVHNGHGEEAMRLHAVMFREGVKPDHATLIAVLTA 279

Query: 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY 188
           CS L L+ +G   H +  K    S +   N L+++Y +CG +  +  +F  +  +D VS+
Sbjct: 280 CSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGESELVFINLRTKDIVSW 339

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER 248
           N++I  Y + G  +    LF  M +                   +GL         +P  
Sbjct: 340 NTIIAAYAQHGKYQKVIALFHEMEM-------------------TGL---------IP-- 369

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS-----WANMIDGYAKLGRVDIARRL 303
           D I++ S+L  C   GK+D +  LFD M  +  +S     +A ++D  ++ G+++ A   
Sbjct: 370 DDITFLSVLSACGHVGKVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSY 429

Query: 304 FDEMP 308
             +MP
Sbjct: 430 IKDMP 434


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 211/680 (31%), Positives = 348/680 (51%), Gaps = 88/680 (12%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+ C    D+    Q+H  ++ TGF  +  +   LV  ++   C    + AR +F    
Sbjct: 16  VLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAK--CGGFGD-ARSLFDAI- 71

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
                +    WNA+   Y H     EA+ +F  M+ +G+  ++FS S ++  C+ L    
Sbjct: 72  ---PDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSV 128

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           +G +IHG L K+ + SD F  N L+ +Y + G LE A  +FD++   D VS+N++I G V
Sbjct: 129 QGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCV 188

Query: 197 ----------------KSG------NIESARELFDSMPIRE------RNLISWN------ 222
                           KSG       + SA +    M +RE       +LI  +      
Sbjct: 189 LHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSF 248

Query: 223 ---SVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR 279
               +++ Y++  S +  A  +F+ MPERD+I+WN+++ G  +  + ++A +LF  M   
Sbjct: 249 LGVGLIDMYSKCNS-MDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTE 307

Query: 280 DV---------------VSWAN------------------------MIDGYAKLGRVDIA 300
            +                  AN                        +ID Y K G V+ A
Sbjct: 308 GIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDA 367

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
            R+F+E P  D+V   +++  Y ++G   +AL ++  MQ +  + PD      +L+A A 
Sbjct: 368 TRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQ-DRGIKPDSFVCSSLLNACAS 426

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
           L   ++G  +H ++ K  F  +   G +L++MY+KCGSIE+A   F +I    +  W+AM
Sbjct: 427 LSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAM 486

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           I GLA HG G+ A  L  +M ++ + P+ IT   +L AC HAGLV E    F  M+ +  
Sbjct: 487 IGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFG 546

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           +EP  +HY CM+D+LGRAG +EAA  L+  MP + N ++W  LL A R ++N+++GE  A
Sbjct: 547 IEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAA 606

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
           + L+ ++   S ++VLL+N++A +GMW+   RVR +MK+  +KK PG SW+E++  V+ F
Sbjct: 607 EMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTF 666

Query: 601 FVRDKSRLQVRDIYYMLDNM 620
            V D+S  +  +IY  LD +
Sbjct: 667 IVGDRSHSRSTEIYAKLDEL 686



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 130/500 (26%), Positives = 217/500 (43%), Gaps = 92/500 (18%)

Query: 114 GVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFA 173
           G+  ++F+   VLKAC+    +  G Q+HG++    F SD F+ N L+ LY +CG    A
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64

Query: 174 RQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPI-----RERNLISWNSVLNGY 228
           R LFD +  R  VS+N++   YV S     A  LF  M +      E +L S  +V  G 
Sbjct: 65  RSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGL 124

Query: 229 AQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMI 288
                G +    + +   + D  S N+++    K G ++DA ++FD++ K D+VSW    
Sbjct: 125 EDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSW---- 180

Query: 289 DGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD 348
                                      NA++ G V + Y  +ALE+   M  +  + P+ 
Sbjct: 181 ---------------------------NAIIAGCVLHEYHHRALELLREMN-KSGMCPNM 212

Query: 349 ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ 408
            +L   L A A +   + G  +H  L K     +   GV LIDMYSKC S+++A  VF+ 
Sbjct: 213 FTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKL 272

Query: 409 IEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
           + +  +  WNA+I+G + +   E A  L   M    I  +  T + +L + A    ++  
Sbjct: 273 MPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIA---ALQAN 329

Query: 469 LLCFELMRRIHKLEP----ELQHY--GCMVDILGRAGHIEAARNLIEDMP---------- 512
            +C    R+IH L      E  +Y    ++D  G+ GH+E A  + E+ P          
Sbjct: 330 YMC----RQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSL 385

Query: 513 ------------------------MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
                                   ++P+  +  +LL+AC +      G+ V  H++    
Sbjct: 386 VTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHIL---- 441

Query: 549 SNSSSYVLLSNMFAGLGMWN 568
                +  +S++FAG  + N
Sbjct: 442 ----KFGFMSDIFAGNSLVN 457


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 204/624 (32%), Positives = 333/624 (53%), Gaps = 58/624 (9%)

Query: 12  NSTQSTLLL--LRKCKTLNDVNQIHARMITTGFIK-NTHLTTKLVASFSSSPCTPLTEFA 68
           +S Q   LL  L   K+L    Q+HA + T G ++ NT+L TKL A ++     P   +A
Sbjct: 21  DSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMP---YA 77

Query: 69  RYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA 128
           ++IF +       K+ FLWN++I+ Y+    P  AL ++  ML  G   D F+   VLKA
Sbjct: 78  QHIFDQIVL----KNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKA 133

Query: 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY 188
           C  L L E G ++H L+       D+++ N ++S+Y                        
Sbjct: 134 CGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYF----------------------- 170

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPE 247
                   K G++E+AR +FD M +R+  L SWN++++G+  +K+G  + A+++F  M  
Sbjct: 171 --------KFGDVEAARVVFDRMLVRD--LTSWNTMMSGF--VKNGEARGAFEVFGDMRR 218

Query: 248 R----DLISWNSMLHGC-----VKCGKMDDAQALFDKMPKRDVVSWA--NMIDGYAKLGR 296
                D  +  ++L  C     +K GK      + +    R    +   ++ID Y     
Sbjct: 219 DGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCES 278

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           V  AR+LF+ +  +DVV+ N+++ GY + G + +ALE+F  M   +   PD+ +++ VL+
Sbjct: 279 VSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVV-VGAVPDEVTVISVLA 337

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
           A  Q+  +  G  +  Y+ K  + +N   G ALI MY+ CGS+  A +VF+++ + ++  
Sbjct: 338 ACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPA 397

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
              M+ G  IHG G  A  +  EM    + PD+  FT +L+AC+H+GLV EG   F  M 
Sbjct: 398 CTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMT 457

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
           R + +EP   HY C+VD+LGRAG+++ A  +IE+M ++PN+ +W  LLSACR + N+ + 
Sbjct: 458 RDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLA 517

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
              A+ L  ++    S YV LSN++A    W D   VR+++ +R L+K P  S++EL  +
Sbjct: 518 VISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKM 577

Query: 597 VHEFFVRDKSRLQVRDIYYMLDNM 620
           VH+FFV D S  Q  DIY  L ++
Sbjct: 578 VHQFFVGDTSHEQSDDIYAKLKDL 601


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 188/552 (34%), Positives = 314/552 (56%), Gaps = 18/552 (3%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLML--DNGVSVDKFSASLVLKACSRLGLIEEG 138
           ++D   WN++I  Y+      +++  + LML  D   ++++ + S +L   S+ G ++ G
Sbjct: 103 RRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLG 162

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
            QIHG + K  F S +F+ + L+ +Y + G +  AR++FD++  ++ V YN++I G ++ 
Sbjct: 163 RQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRC 222

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMP----ERDLISW 253
           G +E ++ LF  M  RER+ ISW S++ G+ Q  +GL + A  IF +M     + D  ++
Sbjct: 223 GRVEDSKRLFFEM--RERDSISWTSMITGFTQ--NGLDRDAIDIFREMKLENLQMDQYTF 278

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRD----VVSWANMIDGYAKLGRVDIARRLFDEMPK 309
            S+L  C     + + + +   + + D    +   + ++D Y K   +  A  +F +M  
Sbjct: 279 GSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTC 338

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           ++VV+  AM+ GY +NGYS +A++ F +MQ +  + PDD +L  V+S+ A L  +++G  
Sbjct: 339 KNVVSWTAMLVGYGQNGYSEEAVKTFSDMQ-KYGIEPDDFTLGSVISSCANLASLEEGAQ 397

Query: 370 IH-RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            H R L     S       AL+ +Y KCGSIE++ ++F +I       W A+++G A  G
Sbjct: 398 FHARALTSGLISFITVSN-ALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFG 456

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
                  L   M    ++PD +TF G+L+AC+ AGLV++G   FE M   H + P   HY
Sbjct: 457 KANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHY 516

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
            CM+D+  RAG IE ARN I  MP  P+ + W TLLS+CR Y N+++G+  A+ L+ +D 
Sbjct: 517 TCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDP 576

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
            N++SYVLLS+++A  G W +  R+R  M+++ L+K PGCSWI+ +  VH F   DKS  
Sbjct: 577 HNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNP 636

Query: 609 QVRDIYYMLDNM 620
               IY  L+ +
Sbjct: 637 FSDQIYSELEKL 648



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 125/452 (27%), Positives = 224/452 (49%), Gaps = 49/452 (10%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +LK C       +   +H  + K     + FL N LIS Y + G + +A ++FD+M   +
Sbjct: 15  LLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPN 74

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF-AWQIFE 243
             S+N+++  Y K G +     LFD+MP   R+ +SWNS+++GYA    GL + + + + 
Sbjct: 75  LYSWNTILSAYSKLGRVSEMEYLFDAMP--RRDGVSWNSLISGYA--GCGLIYQSVKAYN 130

Query: 244 KMPERD------LISWNSML-----HGCVKCGK--------------------------- 265
            M + D       I+++++L      GCVK G+                           
Sbjct: 131 LMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSK 190

Query: 266 ---MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGY 322
              +  A+ +FD++P+++VV +  +I G  + GRV+ ++RLF EM +RD ++  +M+ G+
Sbjct: 191 MGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGF 250

Query: 323 VRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN 382
            +NG    A++IF  M+ E  L  D  +   VL+A   +  + +G  +H Y+ +  +  N
Sbjct: 251 TQNGLDRDAIDIFREMKLE-NLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDN 309

Query: 383 GKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMER 442
                AL+DMY KC +I++A  VF+++   +V  W AM+ G   +G  E A     +M++
Sbjct: 310 IFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQK 369

Query: 443 LSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIE 502
             IEPDD T   ++++CA+   ++EG   F        L   +     +V + G+ G IE
Sbjct: 370 YGIEPDDFTLGSVISSCANLASLEEGAQ-FHARALTSGLISFITVSNALVTLYGKCGSIE 428

Query: 503 AARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534
            +  L  ++  + ++V W  L+S    +   N
Sbjct: 429 DSHRLFNEISFK-DEVTWTALVSGYAQFGKAN 459



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 115/478 (24%), Positives = 215/478 (44%), Gaps = 97/478 (20%)

Query: 14  TQSTLLLL---RKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY 70
           T STLL+L   R C  L    QIH  ++  GF+    + + LV  +S      +   AR 
Sbjct: 145 TFSTLLILASKRGCVKLG--RQIHGHVVKFGFMSYVFVGSPLVDMYSK---MGMISCARK 199

Query: 71  IFFK----------------------------YHAFREKKDPFLWNAIIKTYSH-GLDPK 101
           +F +                            +   RE +D   W ++I  ++  GLD +
Sbjct: 200 VFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRE-RDSISWTSMITGFTQNGLD-R 257

Query: 102 EALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLI 161
           +A+ +F  M    + +D+++   VL AC  +  ++EG Q+H  + +  +  ++F+ + L+
Sbjct: 258 DAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALV 317

Query: 162 SLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLI 219
            +Y +C  ++ A  +F KM  ++ VS+ +M+ GY ++G  E A + F  M     E +  
Sbjct: 318 DMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDF 377

Query: 220 SWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV----KCGKMDDAQALFDK 275
           +  SV++  A L S L+   Q   +     LIS+ ++ +  V    KCG ++D+  LF++
Sbjct: 378 TLGSVISSCANLAS-LEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNE 436

Query: 276 MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
           +  +D V+W  ++ GYA+ G+ +    LF+ M               + +G         
Sbjct: 437 ISFKDEVTWTALVSGYAQFGKANETIGLFESM---------------LAHG--------- 472

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVA------- 388
                   L PD  + + VLSA ++ G ++KG  I         S+  +HG+        
Sbjct: 473 --------LKPDKVTFIGVLSACSRAGLVEKGNQIFE-------SMINEHGIVPIQDHYT 517

Query: 389 -LIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHG---LGELAFDLLMEME 441
            +ID++S+ G IE A     ++        W  +++    +G   +G+ A + LME++
Sbjct: 518 CMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELD 575


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 194/595 (32%), Positives = 313/595 (52%), Gaps = 63/595 (10%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL-Q 140
           +D   +NA+I  YSH  D   A+ +F  M       D F+ + VL A + +   E    Q
Sbjct: 110 RDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQ 169

Query: 141 IHGLLRKVAFGSDLF--LQNCLISLYVRCGY---------LEFARQLFDKMGIRDSVSYN 189
           +HG +  V FG ++F  + N L+S+YV+C           +  AR+LFD+M  R+   + 
Sbjct: 170 MHGTV--VKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWT 227

Query: 190 SMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKM--- 245
           ++I GYV++G++  ARE+ D+M   E+  I+WN++++GY  L  GL + A  +F KM   
Sbjct: 228 TLITGYVRNGDLTGAREILDTMT--EQPGIAWNAMISGY--LHHGLFEDALTLFRKMRLL 283

Query: 246 --------------------------------------PERDLI--SWNSMLHGCVKCGK 265
                                                 P+RD +    N+++    K GK
Sbjct: 284 GVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGK 343

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
           +D A+ +F +MP +D+++W  ++ GY   GR++ A+  F +MP+++++    M+ G  +N
Sbjct: 344 VDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQN 403

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
           G+  +AL++F+ M+ + Y  P+D +    ++A + LG ++ G  +H  +           
Sbjct: 404 GFGEQALKLFNQMKLDGY-EPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSV 462

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
           G A+I MY++CG +E A  +F  +       WN+MI  L  HG G  A +L  +M +  I
Sbjct: 463 GNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGI 522

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR 505
            PD  TF  +L+AC+HAGLV+EG   F  M   + + P   HY  M+D+  RAG    A+
Sbjct: 523 LPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAK 582

Query: 506 NLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565
           N+I+ MP E    IW  LL+ CR + N+++G   A+ L  +   +  +YVLLSNM+A LG
Sbjct: 583 NVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLG 642

Query: 566 MWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            WND  R R +M++R +KK P CSW E+E  VH F V D    +V  IY  L+ +
Sbjct: 643 RWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVHPEVLSIYNYLEKL 697



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 132/507 (26%), Positives = 222/507 (43%), Gaps = 100/507 (19%)

Query: 110 MLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY 169
           +LD  V  +++ A L L     L        +HG +    F     + N LI +Y +   
Sbjct: 4   VLDVRVLANRYFAQLNLCCPQNLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSD 63

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA 229
             +AR+LFD++   D ++  ++I  Y   GN++ ARE+F+  P+  R+ + +N+++ GY+
Sbjct: 64  FVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYS 123

Query: 230 QLKSGLQFAWQIFEKMP----ERDLISWNSML----------------HGCV-------- 261
            +  G   A ++F  M     + D  ++ S+L                HG V        
Sbjct: 124 HMNDG-HSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIF 182

Query: 262 ------------KCGK---------MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIA 300
                       KC           M  A+ LFD+MPKR+   W  +I GY + G +  A
Sbjct: 183 PAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGA 242

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
           R + D M ++  +A NAM+ GY+ +G    AL +F  M+  L +  D+++   V+SA A 
Sbjct: 243 REILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRL-LGVQVDESTYTSVISACAD 301

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKH----GVALIDMYSKCGSIENAIKV----------- 405
            G    G  +H Y+ K++ + +       G  LI +Y K G ++ A K+           
Sbjct: 302 GGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIIT 361

Query: 406 --------------------FEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
                               F Q+ + ++  W  MI+GLA +G GE A  L  +M+    
Sbjct: 362 WNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGY 421

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH------YGCMVDILGRAG 499
           EP+D  F G + AC+  G ++ G       R++H     L H         M+ +  R G
Sbjct: 422 EPNDYAFAGAITACSVLGALENG-------RQLHAQIVHLGHDSTLSVGNAMITMYARCG 474

Query: 500 HIEAARNLIEDMPMEPNDVIWRTLLSA 526
            +EAAR +   MP   + V W ++++A
Sbjct: 475 IVEAARTMFLTMPF-VDPVSWNSMIAA 500



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 17/245 (6%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +K+   W  +I   +     ++AL +F  M  +G   + ++ +  + ACS LG +E G Q
Sbjct: 387 EKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQ 446

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  +  +   S L + N +I++Y RCG +E AR +F  M   D VS+NSMI    + G+
Sbjct: 447 LHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGH 506

Query: 201 IESARELFDSM------PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK---MPERDLI 251
              A EL++ M      P R R  ++  S  +    ++ G ++   + E     P  D  
Sbjct: 507 GVKAIELYEQMLKEGILPDR-RTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGED-- 563

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDI----ARRLFDE 306
            +  M+    + GK  DA+ + D MP +     W  ++ G    G +D+    A +LF  
Sbjct: 564 HYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKL 623

Query: 307 MPKRD 311
           +P+ D
Sbjct: 624 IPQHD 628


>gi|297805312|ref|XP_002870540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316376|gb|EFH46799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 195/571 (34%), Positives = 314/571 (54%), Gaps = 48/571 (8%)

Query: 24  CKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKD 83
           CK+   +NQIHAR+I  G  ++ +L +  ++S SSS     + F R  +           
Sbjct: 20  CKSEIHLNQIHARIIRKGLEQDQNLISIFISSSSSSLSYSSSVFERVPY---------PG 70

Query: 84  PFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVS-VDKFSASLVLKACSRLGLIEEGLQIH 142
            +LWN +IK YS+     E + +   M+  G +  D+++  LV+K CS       G  +H
Sbjct: 71  TYLWNHLIKGYSNKFLFFETVSLLMRMMRTGFARPDEYTFPLVMKVCSNNAEFRVGSTVH 130

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
           GL+ ++ F  D+ L    +  Y +C                                ++ 
Sbjct: 131 GLVLRIGFDKDVVLGTSFVDFYGKCK-------------------------------DLC 159

Query: 203 SARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCV 261
           SAR++F  MP  ERN++SW +++  Y  +KSG L+ A ++F+ MPER+L +WN+++ G V
Sbjct: 160 SARKVFGEMP--ERNVVSWTALIVAY--VKSGELEEAKRMFDLMPERNLGTWNALVDGLV 215

Query: 262 KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
           K G + +A+ LFD+MPKRD++S+ +MIDGYAK G +  AR LF+     DV A +A++ G
Sbjct: 216 KSGDLVNARKLFDEMPKRDIISYTSMIDGYAKGGDMVSARDLFENARGVDVRAWSALILG 275

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
           Y +NG   +A ++F  M C   + PD+  +V ++SA +Q+G  +    +  YL +     
Sbjct: 276 YAQNGQPNEAFKVFSEM-CAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSYLHQSMNKF 334

Query: 382 NGKHGV-ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
           +  + + ALIDM +KCG ++ A K+FE++    +  + +M+ G+AIHG G  A  L  +M
Sbjct: 335 SSHYVIPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAVRLFEKM 394

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500
               I PD++ FT +L  C+ + LV+EGL  FELMR+ + +     HY C+V++L R G 
Sbjct: 395 VDEGIVPDEVAFTVILKVCSQSRLVEEGLRYFELMRKEYSILASPDHYSCIVNLLSRTGK 454

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560
           ++ A  LI+ MP E +   W +LL  C  + N  + E VA+ L  ++  ++ SYVLLSN+
Sbjct: 455 LKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIAEVVARQLFELEPQSAGSYVLLSNI 514

Query: 561 FAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           +A L  W D   +R  M E  +KK+ G SWI
Sbjct: 515 YAALDRWADLAHLRDKMNENGIKKICGRSWI 545


>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 701

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 211/683 (30%), Positives = 346/683 (50%), Gaps = 99/683 (14%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY--IFFKYHA 77
           LL  C +   + Q+H++ +  G   ++ + TKL              +ARY  +   +  
Sbjct: 10  LLETCCSKISITQLHSQCLKVGLALDSFVVTKLN-----------VLYARYASLCHAHKL 58

Query: 78  FREK--KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVS---VDKFSASLVLKACSRL 132
           F E   K  +LWNA++++Y       E L +F  M  + V+    D ++ S+ LK+CS L
Sbjct: 59  FEETPCKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGL 118

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
             +E G  IHG L+K    SD+F+ + LI LY +CG +  A ++F +    D V + S+I
Sbjct: 119 QKLELGKMIHGFLKK-KIDSDMFVGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSII 177

Query: 193 DGYVKSGNIESARELFDSMPIRER------NLIS-------------------------- 220
            GY ++G+ E A   F  M + E+       L+S                          
Sbjct: 178 TGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGF 237

Query: 221 ------WNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFD 274
                  NS+LN Y +  S ++ A  +F +MP +D+ISW+SM+      G   +A  LF+
Sbjct: 238 DTKLCLANSILNLYGKTGS-IRIAANLFREMPYKDIISWSSMVACYADNGAETNALNLFN 296

Query: 275 KMPKR---------------------------------------DVVSWANMIDGYAKLG 295
           +M  +                                       D+     ++D Y K  
Sbjct: 297 EMIDKRIELNRVTVISALRACASSSNLEEGKQIHKLAVNYGFELDITVSTALMDMYLKCF 356

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
             + A  LF+ MPK+DVV+   +  GY   G + K+L +F NM       PD  +LV +L
Sbjct: 357 SPENAIELFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSN-GTRPDAIALVKIL 415

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
           +A ++LG + + + +H ++ K  F  N   G +LI++Y+KC SI+NA KVF+ +    V 
Sbjct: 416 AASSELGIVQQALCLHAFVTKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGLRHTDVV 475

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLS-IEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
            W+++I     HG GE A  L  +M   S ++P+D+TF  +L+AC+HAGL++EG+  F +
Sbjct: 476 TWSSIIAAYGFHGQGEEALKLSHQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHV 535

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534
           M   ++L P ++HYG MVD+LGR G ++ A ++I +MPM+    +W  LL ACR ++N+ 
Sbjct: 536 MVNEYQLMPNIEHYGIMVDLLGRMGELDKALDMINNMPMQAGPHVWGALLGACRIHQNIK 595

Query: 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           +GE  A +L  +D +++  Y LLSN++     W+DA ++R+++KE  LKK+ G S +E++
Sbjct: 596 IGELAALNLFLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENRLKKIVGQSMVEIK 655

Query: 595 GVVHEFFVRDKSRLQVRDIYYML 617
             VH F   D+   +   IY ML
Sbjct: 656 NEVHSFIASDRFHGESDQIYEML 678


>gi|357112521|ref|XP_003558057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 656

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 199/645 (30%), Positives = 331/645 (51%), Gaps = 85/645 (13%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR- 79
           L +C +   + QIHA+ I +G + +    ++L+   S+S   PL          +H+ R 
Sbjct: 11  LARCCSARHLLQIHAQFIASGLLADAFAASRLLLFTSASRLLPLP--------FHHSLRL 62

Query: 80  ----EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
                  + F  N ++K+   G  P   L ++  +       D ++  ++  AC+    +
Sbjct: 63  LRLVRYPNAFSCNTLLKSALIGGMPHLCLPLYASL---PAPPDSYTHPILAAACASRKDV 119

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
            EG Q+H       FG +L+L+N LI +Y  CG L  AR++FD   + D+VS+N+++  Y
Sbjct: 120 IEGRQVHAHAVSHGFGDNLYLRNALIFMYSACGCLWDARRVFDAGPVWDAVSWNTILAAY 179

Query: 196 VKSGNIESARELFDSMPIRE-----------------------------RNLISWNSVLN 226
           V +G+++ A E+F  MP R                              R++ +W ++++
Sbjct: 180 VHAGDVDQAVEVFAQMPKRNATAVSSMVSLFGRRGMVDEARRVFDAAECRDIFTWTAMIS 239

Query: 227 GYAQ---LKSGLQF-------AWQIFEKM--------PERDLISWNSMLHGCV------- 261
            + +       L          W + E +         + ++I    M HG V       
Sbjct: 240 CFERNDMFAEALHVFSCMRRERWHVDEPLMVSVVSACAQSEVIQNGQMCHGLVIRAGLCS 299

Query: 262 -------------KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
                         C  +  A+ LFD     D  SW +MI GY K G V  A  LF  MP
Sbjct: 300 QVNVQNALIHMYSSCLDVFAARRLFDSGECLDQYSWNSMIAGYLKNGHVKDAMALFSAMP 359

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            +D V+ + ++ G V+N  S  AL +FDNMQ +  + PD+ ++V V+SA   L  ++KG 
Sbjct: 360 NKDNVSWSTVISGCVQNNQSSDALTVFDNMQAQ-GIRPDEVTIVSVISACTNLSALEKGK 418

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
           ++H Y++++Q+ ++   G +LI+MY KCG +E A++ F  +E+     WNA+I GLA++G
Sbjct: 419 SVHEYIKQNQYYVSLVLGTSLINMYMKCGCLEAALEAFNIMEEKGTPCWNAVIVGLAMNG 478

Query: 429 LGELAFDLLMEMERL-SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           L   + D+  EME   +  P++ITFTG+L+AC HAGLV EG   F+LM+  +++ P ++H
Sbjct: 479 LVMKSLDMFSEMEASDTATPNEITFTGVLSACRHAGLVDEGRHFFKLMQHRYQIVPNIRH 538

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
           YGCMVD+LGRAG+++ A ++I+ MPM P+   W  LL AC  +    VGE V + L+  D
Sbjct: 539 YGCMVDLLGRAGYVKEAEDMIQSMPMSPDVPAWGALLGACWKHGEYEVGERVGRKLVNRD 598

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
             +     +LSN++A  GMW     +R  MK+R+++K+ G S ++
Sbjct: 599 PLHDGFQTMLSNIYAKEGMWQSVDDLRGSMKQRHVQKVSGHSVVK 643


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 187/470 (39%), Positives = 277/470 (58%), Gaps = 23/470 (4%)

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIES--ARELFDSM---PIRERNLISWNSV 224
           L++A ++F++M  R+  S+N++I G+ +S   ++  A  LF  M      E N  ++ SV
Sbjct: 75  LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSV 134

Query: 225 LNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK------ 275
           L   A+   ++ G Q      +     D    ++++   V CG M DA+ LF K      
Sbjct: 135 LKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKD 194

Query: 276 ------MPKRD--VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGY 327
                   KRD  +V W  MIDGY +LG    AR LFD+M +R VV+ N M+ GY  NG+
Sbjct: 195 MVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGF 254

Query: 328 SMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV 387
              A+E+F  M+ +  + P+  +LV VL AI++LG ++ G  +H Y E     ++   G 
Sbjct: 255 FKDAVEVFREMK-KGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGS 313

Query: 388 ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP 447
           ALIDMYSKCG IE AI VFE++   +V  W+AMING AIHG    A D   +M +  + P
Sbjct: 314 ALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRP 373

Query: 448 DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNL 507
            D+ +  LL AC+H GLV+EG   F  M  +  LEP ++HYGCMVD+LGR+G ++ A   
Sbjct: 374 SDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEF 433

Query: 508 IEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMW 567
           I +MP++P+DVIW+ LL ACR   N+ +G+ VA  L+ M   +S +YV LSNM+A  G W
Sbjct: 434 ILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNW 493

Query: 568 NDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           ++   +R  MKE++++K PGCS I+++GV+HEF V D S  + ++I  ML
Sbjct: 494 SEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSML 543



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 138/476 (28%), Positives = 248/476 (52%), Gaps = 71/476 (14%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           +  C+T+ D++QIHA  I +G +++T     L A+     C       R + + +  F +
Sbjct: 30  INNCRTIRDLSQIHAVFIKSGQMRDT-----LAAAEILRFCATSDLHHRDLDYAHKIFNQ 84

Query: 81  --KKDPFLWNAIIKTYSHGLDPKEALVMFCL----MLDNGVSVDKFSASLVLKACSRLGL 134
             +++ F WN II+ +S   D  +AL+   L    M D  V  ++F+   VLKAC++ G 
Sbjct: 85  MPQRNCFSWNTIIRGFSES-DEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGK 143

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI------------ 182
           I+EG QIHGL  K  FG D F+ + L+ +YV CG+++ AR LF K  I            
Sbjct: 144 IQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRK 203

Query: 183 RDS--VSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQ 240
           RD   V +N MIDGY++ G+ ++AR LFD M  R+R+++SWN++++GY+ L    + A +
Sbjct: 204 RDGEIVLWNVMIDGYMRLGDCKAARMLFDKM--RQRSVVSWNTMISGYS-LNGFFKDAVE 260

Query: 241 IFEKMPERDL----ISWNSMLHGCVKCGKMDDAQALF----DKMPKRDVVSWANMIDGYA 292
           +F +M + D+    ++  S+L    + G ++  + L     D   + D V  + +ID Y+
Sbjct: 261 VFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYS 320

Query: 293 KLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLV 352
           K G ++ A  +F+ +P+ +V+  +AM+ G+  +G +  A++ F  M+ +  + P D + +
Sbjct: 321 KCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMR-QAGVRPSDVAYI 379

Query: 353 IVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG 412
            +L+A +  G +++G    RY                   +S+  S++          + 
Sbjct: 380 NLLTACSHGGLVEEG---RRY-------------------FSQMVSVDGL--------EP 409

Query: 413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
            ++H+  M++ L   GL + A + ++ M    I+PDD+ +  LL AC   G V+ G
Sbjct: 410 RIEHYGCMVDLLGRSGLLDEAEEFILNM---PIKPDDVIWKALLGACRMQGNVEMG 462


>gi|125589995|gb|EAZ30345.1| hypothetical protein OsJ_14392 [Oryza sativa Japonica Group]
          Length = 704

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 181/543 (33%), Positives = 305/543 (56%), Gaps = 40/543 (7%)

Query: 82  KDPFLWNAIIKTYSHGLDPK--EALVMFC-LMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
           +D F W AII  Y+ G +    ++L +F  L+ ++GV  ++F+   VL+AC ++G +E G
Sbjct: 163 RDLFAWTAIISGYARGANEYCCKSLELFVQLLAEDGVMPNEFTYDSVLRACVKMGALEFG 222

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
             IHG L +  F S+  + + L+ LY R G ++ A  +++ + +   ++ N++I G++  
Sbjct: 223 RSIHGCLIQSGFESEQLITSALVDLYCRSGAVDDAVMVYNGLQMPSLITSNTLIAGFISM 282

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLH 258
           G  E A+                                   +F +M E D  S+N M+ 
Sbjct: 283 GRTEDAK----------------------------------LVFSQMTEHDSGSYNLMIK 308

Query: 259 GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP-KRDVVACNA 317
                G+++D + +F+ MP+R++V+  +M+    + G+++  R+LF+++  +R+ V  N+
Sbjct: 309 AYADEGRLEDCRRMFEMMPRRNMVTLNSMMSVLLQNGKLEEGRKLFEQIKDERNTVTWNS 368

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           M+ GYV+N  S +AL++F  M C L +    ++   +L A A +G I++G  +H  L K 
Sbjct: 369 MISGYVQNDQSSEALKLFAVM-CRLSIECSASTFPALLHACATIGTIEQGKMVHALLCKT 427

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLL 437
            F  NG  G AL+DMYSKCG + +A   F  I   +V  W ++INGLA +G    A    
Sbjct: 428 PFESNGYVGTALVDMYSKCGCVSDARAAFSCIMSPNVASWTSLINGLAQNGHWMEAIVQF 487

Query: 438 MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
             M + +++P++ITF G+L A A AGLV +G+  F  M   + + P ++HY C VD+LGR
Sbjct: 488 ARMLKNNVKPNEITFLGILMASARAGLVNKGMRFFHSMES-YGVVPTVEHYTCAVDLLGR 546

Query: 498 AGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557
           A  +  A   I  MP+  + V+W  LL+AC    +L +GE VA+ L  M + + S+YV +
Sbjct: 547 ARRVREAEKFISKMPIPADGVVWGALLTACWYTMDLEMGEKVAEKLFYMGTKHISAYVAM 606

Query: 558 SNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           SN++A LG W D  +VR+ ++  N KK PGCSWIE++ +VH F V D++  +  +IY ML
Sbjct: 607 SNIYAKLGKWEDVVKVRTRLRSINAKKEPGCSWIEVKDMVHVFLVEDRNHPEREEIYLML 666

Query: 618 DNM 620
           +++
Sbjct: 667 EDL 669



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 162/354 (45%), Gaps = 17/354 (4%)

Query: 181 GIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNL--ISWNSVLNGYAQ---LKSGL 235
           G    +S+N+ +  + + G +  A      M      L   ++ S L   A+   L+ G 
Sbjct: 28  GAGPRLSWNATVAAHARRGRVRDALGTAARMHRSAAGLDEATYASALGACARGRCLRMGW 87

Query: 236 QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG 295
           Q   Q+ +   +   +   S+L     C  +D A+ LFD +   + + W+ M+    +  
Sbjct: 88  QVHCQVVKSGSDDFPVVGASLLDFYSSCLDLDAARTLFDTLHANNELLWSPMVVALVRFN 147

Query: 296 RVDIARRLFDEM-PKRDVVACNAMMGGYVR--NGYSMKALEIFDNMQCELYLHPDDASLV 352
            +  A  L   M P RD+ A  A++ GY R  N Y  K+LE+F  +  E  + P++ +  
Sbjct: 148 LLSDALDLLQRMPPSRDLFAWTAIISGYARGANEYCCKSLELFVQLLAEDGVMPNEFTYD 207

Query: 353 IVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG 412
            VL A  ++G ++ G +IH  L +  F        AL+D+Y + G++++A+ V+  ++  
Sbjct: 208 SVLRACVKMGALEFGRSIHGCLIQSGFESEQLITSALVDLYCRSGAVDDAVMVYNGLQMP 267

Query: 413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCF 472
           S+   N +I G    G  E A  +  +M     E D  ++  ++ A A  G +++    F
Sbjct: 268 SLITSNTLIAGFISMGRTEDAKLVFSQM----TEHDSGSYNLMIKAYADEGRLEDCRRMF 323

Query: 473 ELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           E+M R + +         M+ +L + G +E  R L E +  E N V W +++S 
Sbjct: 324 EMMPRRNMVT-----LNSMMSVLLQNGKLEEGRKLFEQIKDERNTVTWNSMISG 372


>gi|38347497|emb|CAE05845.2| OSJNBa0091C07.7 [Oryza sativa Japonica Group]
          Length = 749

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 181/543 (33%), Positives = 305/543 (56%), Gaps = 40/543 (7%)

Query: 82  KDPFLWNAIIKTYSHGLDPK--EALVMFC-LMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
           +D F W AII  Y+ G +    ++L +F  L+ ++GV  ++F+   VL+AC ++G +E G
Sbjct: 208 RDLFAWTAIISGYARGANEYCCKSLELFVQLLAEDGVMPNEFTYDSVLRACVKMGALEFG 267

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
             IHG L +  F S+  + + L+ LY R G ++ A  +++ + +   ++ N++I G++  
Sbjct: 268 RSIHGCLIQSGFESEQLITSALVDLYCRSGAVDDAVMVYNGLQMPSLITSNTLIAGFISM 327

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLH 258
           G  E A+                                   +F +M E D  S+N M+ 
Sbjct: 328 GRTEDAK----------------------------------LVFSQMTEHDSGSYNLMIK 353

Query: 259 GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP-KRDVVACNA 317
                G+++D + +F+ MP+R++V+  +M+    + G+++  R+LF+++  +R+ V  N+
Sbjct: 354 AYADEGRLEDCRRMFEMMPRRNMVTLNSMMSVLLQNGKLEEGRKLFEQIKDERNTVTWNS 413

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           M+ GYV+N  S +AL++F  M C L +    ++   +L A A +G I++G  +H  L K 
Sbjct: 414 MISGYVQNDQSSEALKLFAVM-CRLSIECSASTFPALLHACATIGTIEQGKMVHALLCKT 472

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLL 437
            F  NG  G AL+DMYSKCG + +A   F  I   +V  W ++INGLA +G    A    
Sbjct: 473 PFESNGYVGTALVDMYSKCGCVSDARAAFSCIMSPNVASWTSLINGLAQNGHWMEAIVQF 532

Query: 438 MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
             M + +++P++ITF G+L A A AGLV +G+  F  M   + + P ++HY C VD+LGR
Sbjct: 533 ARMLKNNVKPNEITFLGILMASARAGLVNKGMRFFHSMES-YGVVPTVEHYTCAVDLLGR 591

Query: 498 AGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557
           A  +  A   I  MP+  + V+W  LL+AC    +L +GE VA+ L  M + + S+YV +
Sbjct: 592 ARRVREAEKFISKMPIPADGVVWGALLTACWYTMDLEMGEKVAEKLFYMGTKHISAYVAM 651

Query: 558 SNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           SN++A LG W D  +VR+ ++  N KK PGCSWIE++ +VH F V D++  +  +IY ML
Sbjct: 652 SNIYAKLGKWEDVVKVRTRLRSINAKKEPGCSWIEVKDMVHVFLVEDRNHPEREEIYLML 711

Query: 618 DNM 620
           +++
Sbjct: 712 EDL 714



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 169/361 (46%), Gaps = 17/361 (4%)

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNL--ISWNSVLNGYAQ 230
           AR +FD M  R ++S+N+ +  + + G +  A      M      L   ++ S L   A+
Sbjct: 65  ARGVFDGMRRRAALSWNATVAAHARRGRVRDALGTAARMHRSAAGLDEATYASALGACAR 124

Query: 231 ---LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANM 287
              L+ G Q   Q+ +   +   +   S+L     C  +D A+ LFD +   + + W+ M
Sbjct: 125 GRCLRMGWQVHCQVVKSGSDDFPVVGASLLDFYSSCLDLDAARTLFDTLHANNELLWSPM 184

Query: 288 IDGYAKLGRVDIARRLFDEM-PKRDVVACNAMMGGYVR--NGYSMKALEIFDNMQCELYL 344
           +    +   +  A  L   M P RD+ A  A++ GY R  N Y  K+LE+F  +  E  +
Sbjct: 185 VVALVRFNLLSDALDLLQRMPPSRDLFAWTAIISGYARGANEYCCKSLELFVQLLAEDGV 244

Query: 345 HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIK 404
            P++ +   VL A  ++G ++ G +IH  L +  F        AL+D+Y + G++++A+ 
Sbjct: 245 MPNEFTYDSVLRACVKMGALEFGRSIHGCLIQSGFESEQLITSALVDLYCRSGAVDDAVM 304

Query: 405 VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL 464
           V+  ++  S+   N +I G    G  E A  +  +M     E D  ++  ++ A A  G 
Sbjct: 305 VYNGLQMPSLITSNTLIAGFISMGRTEDAKLVFSQM----TEHDSGSYNLMIKAYADEGR 360

Query: 465 VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
           +++    FE+M R + +         M+ +L + G +E  R L E +  E N V W +++
Sbjct: 361 LEDCRRMFEMMPRRNMVT-----LNSMMSVLLQNGKLEEGRKLFEQIKDERNTVTWNSMI 415

Query: 525 S 525
           S
Sbjct: 416 S 416


>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 474

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 168/422 (39%), Positives = 265/422 (62%), Gaps = 8/422 (1%)

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLH 258
           G I SA ++F  M   E+N++ W S++NGY  L   L  A + F+  PERD++ WN+M+ 
Sbjct: 42  GVIASANKVFCEMV--EKNVVLWTSMINGYL-LNKDLVSARRYFDLSPERDIVLWNTMIS 98

Query: 259 GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
           G ++ G M +A++LFD+MP RDV+SW  +++GYA +G ++   R+FD+MP+R+V + N +
Sbjct: 99  GYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGL 158

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK-- 376
           + GY +NG   + L  F  M  E  + P+DA++ +VLSA A+LG  D G  +H+Y E   
Sbjct: 159 IKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLG 218

Query: 377 -DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
            ++  +N K+  ALIDMY KCG+IE A++VF+ I+   +  WN MINGLA HG G  A +
Sbjct: 219 YNKVDVNVKN--ALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALN 276

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           L  EM+   I PD +TF G+L AC H GLV++GL  F  M     + PE++H GC+VD+L
Sbjct: 277 LFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLL 336

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
            RAG +  A   I  MP++ + VIW TLL A + Y+ +++GE   + LI ++  N +++V
Sbjct: 337 SRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFV 396

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY 615
           +LSN++   G ++DA R++  M++   KK  G SWIE +  + +F+   +   +  ++  
Sbjct: 397 MLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGVSWIETDDGLVKFYSSGEKHPRTEELQR 456

Query: 616 ML 617
           +L
Sbjct: 457 IL 458



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 163/336 (48%), Gaps = 52/336 (15%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           ++ L   +I+ Y+    L  AR+ FD    RD V +N+MI GY++ GN+  AR LFD MP
Sbjct: 58  NVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLFDQMP 117

Query: 213 IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
            R+  ++SWN+VL GYA +   ++   ++F+ MPER++ SWN ++ G  + G++ +    
Sbjct: 118 CRD--VMSWNTVLEGYANI-GDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGS 174

Query: 273 FDKM-----------------------------------------PKRDVVSWANMIDGY 291
           F +M                                          K DV     +ID Y
Sbjct: 175 FKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMY 234

Query: 292 AKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASL 351
            K G ++IA  +F  + +RD+++ N M+ G   +G+  +AL +F  M+    + PD  + 
Sbjct: 235 GKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNS-GISPDKVTF 293

Query: 352 VIVLSAIAQLGHIDKGVAIHRYLEKDQFSL--NGKHGVALIDMYSKCGSIENAIKVFEQI 409
           V VL A   +G ++ G+A    +  D FS+    +H   ++D+ S+ G +  A++   ++
Sbjct: 294 VGVLCACKHMGLVEDGLAYFNSMFTD-FSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKM 352

Query: 410 E-DGSVDHWNAMINGLAIH---GLGELAFDLLMEME 441
                   W  ++    ++    +GE+A + L+++E
Sbjct: 353 PVKADAVIWATLLGASKVYKKVDIGEVALEELIKLE 388



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 116/245 (47%), Gaps = 23/245 (9%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV-DKFSASLVLKACSRLGLIEEGL 139
           +++ F WN +IK Y+      E L  F  M+D G  V +  + +LVL AC++LG  + G 
Sbjct: 149 ERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGK 208

Query: 140 QIHGLLRKVAFGS-DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
            +H     + +   D+ ++N LI +Y +CG +E A ++F  +  RD +S+N+MI+G    
Sbjct: 209 WVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAH 268

Query: 199 GNIESARELFDSMPIR--ERNLISWNSVLNGYAQL---KSGLQFAWQIFEK---MPERDL 250
           G+   A  LF  M       + +++  VL     +   + GL +   +F     MPE + 
Sbjct: 269 GHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEH 328

Query: 251 ISWNSMLHGCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRLF 304
                   GCV     + G +  A    +KMP K D V WA ++       +VDI     
Sbjct: 329 C-------GCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVAL 381

Query: 305 DEMPK 309
           +E+ K
Sbjct: 382 EELIK 386



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 62/115 (53%), Gaps = 2/115 (1%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           +++D   WN +I   +      EAL +F  M ++G+S DK +   VL AC  +GL+E+GL
Sbjct: 251 KRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGL 310

Query: 140 Q-IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMI 192
              + +    +   ++    C++ L  R G+L  A +  +KM ++ D+V + +++
Sbjct: 311 AYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLL 365


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 205/664 (30%), Positives = 333/664 (50%), Gaps = 83/664 (12%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           Q+H  ++  G    T +   LV  +S        E    IF K H    ++D   +N++I
Sbjct: 234 QLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAE---QIFSKMH----RRDRISYNSLI 286

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
              +       AL +F  M  + +  D  + + +L AC+ +G   +G Q+H  + K+   
Sbjct: 287 SGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMS 346

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
           SDL ++  L+ LYV+C  +E A + F      + V +N M+  Y + GN+  +  +F  M
Sbjct: 347 SDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQM 406

Query: 212 PIRE--RNLISWNSVLNGYAQL--------------KSGLQF------------------ 237
            I     N  ++ S+L     L              KSG QF                  
Sbjct: 407 QIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGEL 466

Query: 238 --AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP----KRDVVSWANMIDG- 290
             A  I +++ E D++SW +M+ G  +     +A  LF +M     + D + +++ I   
Sbjct: 467 DTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISAC 526

Query: 291 ----------------------------------YAKLGRVDIARRLFDEMPKRDVVACN 316
                                             YA+ GR   A   F+++  +D ++ N
Sbjct: 527 AGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWN 586

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
           A++ G+ ++G+  +AL++F  M  +  +  +  +    +SA A   +I +G  IH  + K
Sbjct: 587 ALISGFAQSGHCEEALQVFSQMN-QAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIK 645

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
             +    +    LI +YSKCGSIE+A + F ++ + +V  WNAMI G + HG G  A  L
Sbjct: 646 TGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSL 705

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
             EM++L + P+ +TF G+L+AC+H GLV EGL  F  M + H L P+ +HY C+VD+LG
Sbjct: 706 FEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLG 765

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556
           RA  +  AR  IE+MP+EP+ +IWRTLLSAC  ++N+ +GE  A+HL+ ++  +S++YVL
Sbjct: 766 RAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVL 825

Query: 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYM 616
           LSNM+A  G W+   R R MMK+R +KK PG SWIE++  +H FFV D+       IY  
Sbjct: 826 LSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEY 885

Query: 617 LDNM 620
           +D++
Sbjct: 886 IDDL 889



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 167/622 (26%), Positives = 267/622 (42%), Gaps = 96/622 (15%)

Query: 10  PCNSTQSTLLLLRKCK----TLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLT 65
           P  ST +++L  R C           QIHA++I  GF  +  +   L+  +S +    L 
Sbjct: 109 PDESTFASVL--RACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDL- 165

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
             A+ +F +       KD   W A+I   S      EA+++FC M  + V    +  S V
Sbjct: 166 --AKLVFERLFL----KDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSV 219

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           L AC+++ L + G Q+HG + K    S+ F+ N L++LY R G L  A Q+F KM  RD 
Sbjct: 220 LSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDR 279

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPI--RERNLISWNSVLNGYAQLKSGL---QFAWQ 240
           +SYNS+I G  + G  + A +LF+ M +   + + ++  S+L+  A + +G    Q    
Sbjct: 280 ISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSY 339

Query: 241 IFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIA 300
           + +     DLI   S+L   VKC  ++ A   F      +VV W  M+  Y +LG +   
Sbjct: 340 VIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLS-- 397

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
                                        ++  IF  MQ E  L P+  +   +L     
Sbjct: 398 -----------------------------ESYWIFLQMQIE-GLMPNQYTYPSILRTCTS 427

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
           LG +D G  IH  + K  F  N      LIDMY+K G ++ A  + +++ +  V  W AM
Sbjct: 428 LGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAM 487

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA-----------HA------- 462
           I G   H L   A  L  EME   I  D+I F+  ++ACA           HA       
Sbjct: 488 IAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGY 547

Query: 463 -----------------GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR 505
                            G  ++  L FE +     +      +  ++    ++GH E A 
Sbjct: 548 SEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNIS-----WNALISGFAQSGHCEEAL 602

Query: 506 NLIEDM---PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI--GMDSSNSSSYVLLSNM 560
            +   M    +E N   + + +SA  N  N+  G+ +   +I  G DS   +S VL++ +
Sbjct: 603 QVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLIT-L 661

Query: 561 FAGLGMWNDARRVRSMMKERNL 582
           ++  G   DA+R    M E+N+
Sbjct: 662 YSKCGSIEDAKREFFEMPEKNV 683



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 139/542 (25%), Positives = 251/542 (46%), Gaps = 91/542 (16%)

Query: 20  LLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +LR C +L  ++   QIH ++I +GF  N ++ + L+  ++        + AR I  +  
Sbjct: 421 ILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHG---ELDTARGILQR-- 475

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
             RE+ D   W A+I  Y+      EAL +F  M + G+  D    S  + AC+ +  + 
Sbjct: 476 -LREE-DVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALN 533

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           +G QIH       +  DL + N L+SLY RCG  + A   F+K+  +D++S+N++I G+ 
Sbjct: 534 QGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFA 593

Query: 197 KSGNIESARELFDSMPIR--ERNLISWNSVLNG---YAQLKSGLQFAWQIFEKMPERDLI 251
           +SG+ E A ++F  M     E NL ++ S ++     A +K G Q    + +   + +  
Sbjct: 594 QSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETE 653

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           + N ++    KCG ++DA+  F +MP+++VVSW  MI GY++                  
Sbjct: 654 ASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQ------------------ 695

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
                        +GY  +A+ +F+ M+ +L L P+  + V VLSA + +G +++G++  
Sbjct: 696 -------------HGYGSEAVSLFEEMK-QLGLMPNHVTFVGVLSACSHVGLVNEGLSYF 741

Query: 372 RYLEKDQ-FSLNGKHGVALIDMYSKCGSIENAIKVFEQ--IEDGSVDHWNAMINGLAIHG 428
           R + K+       +H V ++D+  +   +  A +  E+  IE  ++  W  +++   +H 
Sbjct: 742 RSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMI-WRTLLSACTVHK 800

Query: 429 ---LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL--------------------- 464
              +GE A   L+E+E      D  T+  L N  A +G                      
Sbjct: 801 NIEIGEFAARHLLELE----PEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPG 856

Query: 465 -----VKEGLLCFELMRRIHKLEPELQHYGCMVDIL----GRAGHIEAARNLIEDMPMEP 515
                VK  +  F +  R+H L  ++  Y   +D L    G  G+++   NL+ D+  E 
Sbjct: 857 RSWIEVKNSIHAFFVGDRLHPLAEQIYEY---IDDLNERAGEIGYVQDRYNLLNDVEQEQ 913

Query: 516 ND 517
            D
Sbjct: 914 KD 915



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 115/498 (23%), Positives = 211/498 (42%), Gaps = 89/498 (17%)

Query: 110 MLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY 169
           M + G+  +  +   + + C   G + +  ++H  + K  F  +  L + LI +Y+  G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRER---NLISWNSVLN 226
           ++ A +LFD +   +   +N +I G +          LF S+ I E    +  ++ SVL 
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLF-SLMITENVTPDESTFASVLR 119

Query: 227 GYAQLKSGLQFAWQIFEKMPERDLIS----WNSMLHGCVKCGKMDDAQALFDKMPKRDVV 282
             +  K+  Q   QI  K+      S     N ++    K G +D A+ +F+++  +D V
Sbjct: 120 ACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSV 179

Query: 283 SWANMIDGYAKLGRVDIARRLFDEMPKRDVV----------------------------- 313
           SW  MI G ++ GR D A  LF +M K  V+                             
Sbjct: 180 SWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFI 239

Query: 314 ----------ACNAMMGGYVRNG-------------------------------YSMKAL 332
                      CNA++  Y R G                               +S +AL
Sbjct: 240 VKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRAL 299

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDM 392
           ++F+ MQ +  + PD  ++  +LSA A +G   KG  +H Y+ K   S +     +L+D+
Sbjct: 300 QLFEKMQLDC-MKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDL 358

Query: 393 YSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL--AFDLLMEMERLSIEPDDI 450
           Y KC  IE A + F   E  +V  WN M+  +A   LG L  ++ + ++M+   + P+  
Sbjct: 359 YVKCFDIETAHEYFLTTETENVVLWNVML--VAYGQLGNLSESYWIFLQMQIEGLMPNQY 416

Query: 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC--MVDILGRAGHIEAARNLI 508
           T+  +L  C   G +  G    ++  ++ K   +   Y C  ++D+  + G ++ AR ++
Sbjct: 417 TYPSILRTCTSLGALDLGE---QIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGIL 473

Query: 509 EDMPMEPNDVIWRTLLSA 526
           + +  E + V W  +++ 
Sbjct: 474 QRL-REEDVVSWTAMIAG 490



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 147/344 (42%), Gaps = 61/344 (17%)

Query: 256 MLHGCVKCGKMDDAQALFDKMPK-----RDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
           +  GC   G + DA+ L  ++ K      DV+  + +ID Y   G VD A +LFD++P  
Sbjct: 16  LFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLG-SRLIDIYLAHGEVDNAIKLFDDIPSS 74

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA------QLGHI 364
           +V   N ++ G +    + + L +F  M  E  + PD+++   VL A +      Q+   
Sbjct: 75  NVSFWNKVISGLLAKKLASQVLGLFSLMITE-NVTPDESTFASVLRACSGGKAPFQVTEQ 133

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
                IH          N      LID+YSK G ++ A  VFE++       W AMI+GL
Sbjct: 134 IHAKIIHHGFGSSPLVCN-----PLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGL 188

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA-----------HAGLVKEGL---- 469
           + +G  + A  L  +M + ++ P    F+ +L+AC            H  +VK GL    
Sbjct: 189 SQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSET 248

Query: 470 -LC-------------------FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE 509
            +C                   F  M R  ++      Y  ++  L + G  + A  L E
Sbjct: 249 FVCNALVTLYSRWGNLIAAEQIFSKMHRRDRIS-----YNSLISGLAQRGFSDRALQLFE 303

Query: 510 DMP---MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
            M    M+P+ V   +LLSAC +      G+ +  ++I M  S+
Sbjct: 304 KMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSS 347


>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Vitis vinifera]
          Length = 518

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 175/444 (39%), Positives = 272/444 (61%), Gaps = 9/444 (2%)

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLK-SGLQFAWQIF 242
           VS+ S I  + ++G +  A   F  M I     N I++ ++L+        GL+F   I 
Sbjct: 55  VSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRFGGSIH 114

Query: 243 EKMPERDLISWNSMLHGCV-----KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
             + +  L + N M+   +     KCG++D A  +FD+M  R+ VSW  MIDG  + G V
Sbjct: 115 AYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEV 174

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
             A  LFD+M +RD ++  +M+GG+V+ G   +ALE F  MQ    + PD  +++ VL+A
Sbjct: 175 GEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLA-GVEPDYVTIISVLAA 233

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
            A LG +  G+ I+R++ K  F  N K   +LIDMYS+CG I  A +VFEQ+   S+  W
Sbjct: 234 CANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSW 293

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
           N+MI G A++G  E A +    M +    PD ++FTG L AC+H+GLV EGL  F++M+R
Sbjct: 294 NSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQFFDIMKR 353

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
             K+ P ++HYGC+VD+  RAG +E A N+I +MPM+PN+V+  +LL+ACR + ++ + E
Sbjct: 354 TRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHGDVGLAE 413

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVV 597
            + K+L  +D  + S+YVLLSN++A +G W+ A +VR  MK   + K PG S IE++G +
Sbjct: 414 RLMKYLCEVDPGSDSNYVLLSNIYAAVGRWDGASKVRKKMKALGIHKKPGFSSIEMDGSI 473

Query: 598 HEFFVRDKSRLQVRDIYYMLDNMW 621
           HEF   DK+ ++ ++IY MLD+++
Sbjct: 474 HEFVAGDKTHVETQNIYAMLDHLF 497



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 118/383 (30%), Positives = 202/383 (52%), Gaps = 26/383 (6%)

Query: 46  THLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKK----DPFL-WNAIIKTYSHGLDP 100
           + L T   +S +S P  P T  +R    KYH  R       DP + W + I  +      
Sbjct: 12  SSLVTHPNSSPNSKPNQP-TFPSRPHSTKYHLTRSHTHSPIDPIVSWTSSIALHCRNGQL 70

Query: 101 KEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ----IHGLLRKVAFGSD-LF 155
            EA   F  M   GV  +  +   +L AC+   L  EGL+    IH  +RK+   ++ + 
Sbjct: 71  PEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPL--EGLRFGGSIHAYVRKLGLDTENVM 128

Query: 156 LQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRE 215
           +   L+ +Y +CG L+ A  +FD+M +R+SVS+N+MIDG +++G +  A  LFD M   E
Sbjct: 129 VGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQM--SE 186

Query: 216 RNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLISWNSMLHGCVKCGKMDDA-- 269
           R+ ISW S++ G+ + K   + A + F +M     E D ++  S+L  C   G +     
Sbjct: 187 RDAISWTSMIGGFVK-KGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLW 245

Query: 270 -QALFDKMPKRDVVSWAN-MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGY 327
                 K   +D +  +N +ID Y++ G + +AR++F++MPKR +V+ N+M+ G+  NG+
Sbjct: 246 INRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGH 305

Query: 328 SMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD-QFSLNGKHG 386
           + +ALE F+ M+ E +  PD  S    L+A +  G +D+G+     +++  + S   +H 
Sbjct: 306 AEEALEFFNLMRKEGF-RPDGVSFTGALTACSHSGLVDEGLQFFDIMKRTRKISPRIEHY 364

Query: 387 VALIDMYSKCGSIENAIKVFEQI 409
             L+D+YS+ G +E+A+ V   +
Sbjct: 365 GCLVDLYSRAGRLEDALNVIANM 387



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 142/319 (44%), Gaps = 42/319 (13%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   W ++I  +      ++AL  F  M   GV  D  +   VL AC+ LG +  GL 
Sbjct: 186 ERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLW 245

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           I+  + K  F  ++ + N LI +Y RCG +  ARQ+F++M  R  VS+NSMI G+  +G+
Sbjct: 246 INRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGH 305

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
            E A E F+ M                    K G +            D +S+   L  C
Sbjct: 306 AEEALEFFNLM-------------------RKEGFR-----------PDGVSFTGALTAC 335

Query: 261 VKCGKMDDAQALFDKMPKRDVVS-----WANMIDGYAKLGRVDIARRLFDEMP-KRDVVA 314
              G +D+    FD M +   +S     +  ++D Y++ GR++ A  +   MP K + V 
Sbjct: 336 SHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVV 395

Query: 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI-AQLGHIDKGVAIHRY 373
             +++     +G  +   E      CE  + P   S  ++LS I A +G  D    + + 
Sbjct: 396 LGSLLAACRTHG-DVGLAERLMKYLCE--VDPGSDSNYVLLSNIYAAVGRWDGASKVRKK 452

Query: 374 LEKDQFSLNGKHGVALIDM 392
           ++     ++ K G + I+M
Sbjct: 453 MKA--LGIHKKPGFSSIEM 469


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 183/543 (33%), Positives = 296/543 (54%), Gaps = 8/543 (1%)

Query: 81  KKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           ++D   WN +I   S HG    E L  F  M + G   +  + + VL AC+ +  +E G 
Sbjct: 208 ERDTVSWNTMISILSQHGFGA-ETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGA 266

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
            +H  + ++    D++    LI +Y +CG LE ARQ+FD +   ++VS+ S+I G  ++G
Sbjct: 267 HLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAG 326

Query: 200 NIESARELFDSM---PIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN 254
             E A  LF+ M   P+   +  L +   V      +  G Q       +  +  +   N
Sbjct: 327 FQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVAN 386

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
           +++    KCG +  A   F+ MP RD++SW  MI  +++ G V+ AR  FD+MP+R+V++
Sbjct: 387 ALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVIS 446

Query: 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
            N+M+  Y++ GY  + L+++  M  E  +  D  +    +SA A L  +  G  I    
Sbjct: 447 WNSMLATYMQRGYWEEGLKVYIQMLRE-GVKTDWITFSTSISACADLAVLILGNQILAQA 505

Query: 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
           EK  FS N     +++ MYS+CG IE A K+F  I   ++  WNAM+ G A +G G    
Sbjct: 506 EKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVI 565

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
           ++  +M  +   PD I++  +L+ C+H+G V EG   F  M + H + P  +H+ CMVD+
Sbjct: 566 EIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQYYFLSMTKDHGISPMSEHFVCMVDL 625

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           LGRAG +E A+NLI  MP +PN  IW  LL+ACR + N  + E   K+L+ +D+    SY
Sbjct: 626 LGRAGQLEQAKNLINQMPFKPNAAIWGALLAACRIHGNTKLAELAVKNLLELDAEGPGSY 685

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
            LL+N+++  G       VR +M+++ ++K PGCSWIE++  VH F V D +  Q++D++
Sbjct: 686 CLLANIYSESGKIQGVTNVRKLMRDKGVRKNPGCSWIEVDNRVHVFTVDDTNHPQIKDVH 745

Query: 615 YML 617
            ML
Sbjct: 746 RML 748



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 142/590 (24%), Positives = 274/590 (46%), Gaps = 71/590 (12%)

Query: 21  LRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           +++C +L  +    ++HA++I  G   +  L   L+  +S+  C  +++        Y  
Sbjct: 11  MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSN--CGLISD-------AYRV 61

Query: 78  FREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLD-NGVSVDKFSASL--------VL 126
           F     P  + WN +I  ++     +EA  +F  M + + VS +   +           +
Sbjct: 62  FGGIMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATI 121

Query: 127 KACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSV 186
           KA   LG ++  LQ+HG   K  FG D  ++  ++ +Y++CG ++FA+++F +       
Sbjct: 122 KASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLF 181

Query: 187 SYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG---LQFAWQIFE 243
            +NSMI GY K G+++ A ELF  MP  ER+ +SWN++++  +Q   G   L    +++ 
Sbjct: 182 CWNSMIYGYSKYGSVKKALELFAKMP--ERDTVSWNTMISILSQHGFGAETLNTFLEMWN 239

Query: 244 KMPERDLISWNSMLHGCVKCGKMDDAQALFDKM----PKRDVVSWANMIDGYAKLGRVDI 299
           +    + +++ S+L  C     ++    L  ++    P  DV +   +ID YAK GR++ 
Sbjct: 240 QGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLES 299

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           AR++FD + + + V+  +++GG  + G+  +AL +F+ M+ E+ +  D  +L  VL    
Sbjct: 300 ARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMR-EVPVASDQFTLATVLGVCL 358

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC----------------------- 396
               I  G  +H +        +     AL+ MY+KC                       
Sbjct: 359 SQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTA 418

Query: 397 --------GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD 448
                   G +E A + F+++ + +V  WN+M+      G  E    + ++M R  ++ D
Sbjct: 419 MITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTD 478

Query: 449 DITFTGLLNACAHAGLVKEGLLCFELMRRIHKL--EPELQHYGCMVDILGRAGHIEAARN 506
            ITF+  ++ACA   ++   +L  +++ +  KL     +     +V +  R G IE A+ 
Sbjct: 479 WITFSTSISACADLAVL---ILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQK 535

Query: 507 LIEDMPMEPNDVIWRTLLSA-CRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           +   + M+ N V W  +++   +N +   V E   K L   +  +  SYV
Sbjct: 536 MFSSIVMK-NLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYV 584


>gi|359491277|ref|XP_003634255.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g22760-like [Vitis vinifera]
          Length = 583

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 188/560 (33%), Positives = 310/560 (55%), Gaps = 20/560 (3%)

Query: 45  NTHLTTKLVAS--FSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKE 102
           + HL   LV     S+S C+     A Y+    H   +  D F W   I+ ++     K 
Sbjct: 20  DCHLEPILVRQIILSASNCS--ATIAHYVHSILH-HSKSPDSFSWACTIRFFTQHGQFKG 76

Query: 103 ALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAF---GSDLFLQNC 159
           A  ++  M   G+    F+ S  LKAC R+      L IHG ++K  F   G  ++++  
Sbjct: 77  AFALYVQMQRWGLCPTTFALSSALKACDRIVYRMGVLSIHGQVQKFGFCGGGDGIYMETA 136

Query: 160 LISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLI 219
           L+    + G +E + ++FD+ G      ++SM+ G +KSG++  A+ +FD +P  ++++I
Sbjct: 137 LVDFDCKLGDMEISSKMFDEXG------WHSMLAGCLKSGDLAVAQRVFDEIP--QKDVI 188

Query: 220 SWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR 279
           SWNS+ + YA+    L+ A  +F++MPER+  SWN+M++G V+ G ++ A++ FD MP+R
Sbjct: 189 SWNSMFSXYAR-SGDLEKASSLFQQMPERNFASWNAMINGYVEFGDLESARSFFDAMPQR 247

Query: 280 DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM- 338
           +  SW  MI GY+K G VD A  LFD++  +D++  NA++  Y +N    +AL++F+ M 
Sbjct: 248 NSASWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAVIACYAQNSKLKEALKLFNMML 307

Query: 339 QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS 398
              + + PD+ +L  V+S  +Q G    G  I  Y+ +    ++G+ G AL+D+Y+ CGS
Sbjct: 308 HPNVNVQPDEMTLASVISPCSQFGDFRFGPWIESYMRRLGVEMDGRLGTALLDLYAXCGS 367

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
           I+ A ++F  +    +  + AMI G  ++G    A  L  EM    I P+ I FTGLL  
Sbjct: 368 IDKAYELFHGLRKKDLVAYTAMILGCGMNGKAIDAIKLFDEMVDAQICPNLIMFTGLLTT 427

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
             H+GLV+EG  CF  M++ + L P + HYG MVD+ GRAG ++ A  LI+ MPM+P+  
Sbjct: 428 YNHSGLVEEGYHCFTTMKK-YNLVPLVDHYGIMVDLFGRAGWLQEALELIKSMPMQPHAG 486

Query: 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578
           +W  LL ACR + N ++GE  A+H   ++   +    L  N++      +D RR+R + K
Sbjct: 487 VWGALLFACRLHNNADLGEIAAQHFFELEPDTTGYCSLPCNIYVSGERLDDVRRLRKIRK 546

Query: 579 ERNLKK-LPGCSWIELEGVV 597
           E+   K L    W  L+ ++
Sbjct: 547 EKTFSKYLVAVGWNSLDSLL 566


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 199/585 (34%), Positives = 300/585 (51%), Gaps = 80/585 (13%)

Query: 109 LMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG-SDLFLQNCLISLYVRC 167
           L+     +  +    LVL+ C R   I +  ++   +    F  +D FL N L+ LY + 
Sbjct: 13  LLCSRSTATSEAYTQLVLE-CVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKF 71

Query: 168 GYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWN----- 222
           G L  A+ LFDKM  RD  S+N+++  Y KSG+I++ +  FD MP R+   +S+N     
Sbjct: 72  GKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDS--VSYNTTIAG 129

Query: 223 ------------------------------SVLNGYAQLKSGLQFAWQIFEKMPERDLIS 252
                                         S+LN  AQL   L++  QI   +  R+ + 
Sbjct: 130 FSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLD-LRYGKQIHGSIIVRNFLG 188

Query: 253 ----WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAK--------------- 293
               WN++     KCG+++ A+ LFD + K+++VSW  MI GYAK               
Sbjct: 189 NVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMR 248

Query: 294 --------------------LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE 333
                                GRVD ARR+F E  ++D+V   AMM GY +NG    AL 
Sbjct: 249 LSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALL 308

Query: 334 IFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMY 393
           +F+ M  E ++ PD  +L  V+S+ A+L  +  G A+H        + N     ALIDMY
Sbjct: 309 LFNEMLLE-HIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMY 367

Query: 394 SKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
           SKCG I++A  VF  +   +V  WNAMI G A +G  + A +L   M +   +PD++TF 
Sbjct: 368 SKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFI 427

Query: 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPM 513
           G+L+AC H   +++G   F+ +   H + P L HY CMV++LGR G IE A  LI++M  
Sbjct: 428 GILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAH 487

Query: 514 EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV 573
           +P+ +IW TLLS C    ++   E  A+HL  +D + +  Y++LSNM+A +G W D   V
Sbjct: 488 DPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASV 547

Query: 574 RSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           R++MK +N+KK  G SWIE++  VH F   D++  +  DIY  L+
Sbjct: 548 RNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLN 592


>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
          Length = 1349

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 203/646 (31%), Positives = 336/646 (52%), Gaps = 60/646 (9%)

Query: 25  KTLNDVNQIHARMITTGFIKNT----HLTTKLVASFSSSPCTPLTEFARYIFFKYHAF-R 79
           +T+    ++HA + T+G + +     HL   LV      P  PL     ++ +  H F R
Sbjct: 10  RTVRQAAELHAHLTTSGRLLHPPSAHHLLNSLVNCLP--PSDPL-----HLRYALHLFDR 62

Query: 80  EKKDPFLWN----AIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK--ACSRLG 133
                FL++    A  +  +   DP    V+F  M    V  D F+   + K  + SR  
Sbjct: 63  MPASTFLFDTALRACFRAGTSSGDPDIPFVLFRRMRRAAVRPDGFTFHFLFKCSSSSRPR 122

Query: 134 LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMID 193
            +   +     LR +   +  F+ N LI +Y   G     R+ FD++ ++D+VS+  +I 
Sbjct: 123 ALLCTMLHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVIS 182

Query: 194 GYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQ----FAWQIFEKMPERD 249
           G  K G +  AR L    P+R+  +ISW S++  Y++     +    F   + E +   D
Sbjct: 183 GLAKMGMLSDARLLLAQAPVRD--VISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDD 240

Query: 250 L-----ISWNSMLH----GC-------------------------VKCGKMDDAQALFDK 275
           +     +S  S L     GC                          KCG    A+ +FD 
Sbjct: 241 VTVIGVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDA 300

Query: 276 MPK-RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEI 334
           + + R   SW  +IDGY K G VD+AR LFD+M  RD++  N+M+ GY+ +G   +AL +
Sbjct: 301 VGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLL 360

Query: 335 FDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYS 394
           F NM+    L  D+ ++V +LSA A LG + +G A+H  +E      +   G AL+DMY 
Sbjct: 361 FMNMR-RHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYM 419

Query: 395 KCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTG 454
           KCG +  A  VF+++    V  W AMI GLA +G+G+   +   +M     +P+ +++  
Sbjct: 420 KCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIA 479

Query: 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPME 514
           +L AC+H+ L+ EG L F+ MR ++ + P+++HYGCM+D+LGR+G ++ A +L++ MPM+
Sbjct: 480 VLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQ 539

Query: 515 PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVR 574
           PN VIW ++LSACR ++ +++ +  A+HL+ ++    + YV L N+      W DA ++R
Sbjct: 540 PNSVIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKIR 599

Query: 575 SMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            +M+ER +KK  G S + + G VH+F V DKS  ++ +I  ML+ +
Sbjct: 600 MLMEERQVKKTAGYSSVTVAGQVHKFVVSDKSHPRILEIIAMLEEI 645



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 151/590 (25%), Positives = 268/590 (45%), Gaps = 63/590 (10%)

Query: 20   LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASF--SSSPCTPLTEFARYIFFKYHA 77
            +L  C T   + Q+H R++  G   N  + + LV  +    SP   L+ F          
Sbjct: 803  ILGVCSTYEAL-QLHGRVLALGLCCNPFVGSALVNHYMHVESPHASLSLFRELPL----- 856

Query: 78   FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLG-LIE 136
                ++  + N +++   +    +E +  F  M    + ++  S    +K C + G  +E
Sbjct: 857  ----QNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLE 912

Query: 137  EGLQIHGLLRKVAF-GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
            +G Q+HG++ K  +  S++FL N L+ LY   G               DSV         
Sbjct: 913  QGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIG---------------DSV--------- 948

Query: 196  VKSGNIESARELFDSMPIRERNLISWNSVLNGYA---QLKSGLQFAWQIF--EKMPERDL 250
                  ++ + L D   I   ++ISWNS+L+ YA    +K  + +  Q+    KMP   +
Sbjct: 949  ------DTVKALND---ILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPS--I 997

Query: 251  ISWNSMLHGCVKCGKMDDAQALFDKMPK-----RDVVSWANMIDGYAKLGRVDIARRLFD 305
             S+ S+L    K G       +   + K       V     +ID Y K    D +  +F+
Sbjct: 998  RSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFN 1057

Query: 306  EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH-- 363
            E+P   +  CN+++   +R      ALEI   M  E  + PDD +    + AI+      
Sbjct: 1058 EIPSIALECCNSLITSSLRCNMFDAALEILHCMIVE-GVTPDDVTFSATMKAISLSASPS 1116

Query: 364  IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
            +     +H  L K  F ++     +LI  Y+  G + ++  +FE + D +V  + A+I+ 
Sbjct: 1117 LTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISA 1176

Query: 424  LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
             A +G G  A +L  +M    ++PD++TF   +  C  AG+ +EG L  ELMR   +L+P
Sbjct: 1177 CARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDP 1236

Query: 484  ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
            + +H+ CMV++L R G ++ A  ++E  P+      W +LL +C+ +    +G+  A  L
Sbjct: 1237 DERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANML 1296

Query: 544  IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
            I +   + ++ + +SN F  +G    A R++ M   + +KK  G S IE+
Sbjct: 1297 IDVGRKDPATTLQVSNFFNDIGDRETALRIKEMTNVKEVKK-SGHSLIEV 1345


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 214/691 (30%), Positives = 341/691 (49%), Gaps = 91/691 (13%)

Query: 14  TQSTLLLLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY 70
           T+  L LLR C   K+L     IH +++T G   +  L   L+  + S     L + A+ 
Sbjct: 3   TRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLS---CHLYDHAKC 59

Query: 71  IFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG-VSVDKFSASLVLKAC 129
           +F          +  LWN ++  Y+      EAL +F  +L    +  D ++   VLKAC
Sbjct: 60  VF---DNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKAC 116

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
             L     G  IH  L K     D+ + + L+ +Y +C   E A  LF++M  +D   +N
Sbjct: 117 GGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWN 176

Query: 190 SMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQL---------------- 231
           ++I  Y +SGN + A E F  M     E N ++  + ++  A+L                
Sbjct: 177 TVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINS 236

Query: 232 -----------------KSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALF 273
                            K G L+ A ++FE+MP++ +++WNSM+ G    G       LF
Sbjct: 237 GFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLF 296

Query: 274 DKM---------------------------------------PKRDVVSWANMIDGYAKL 294
            +M                                        + DV   ++++D Y K 
Sbjct: 297 KRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKC 356

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
           G+V++A  +F  +PK  VV+ N M+ GYV  G   +AL +F  M+ + Y+ PD  +   V
Sbjct: 357 GKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMR-KSYVEPDAITFTSV 415

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
           L+A +QL  ++KG  IH  + + +   N     AL+DMY+KCG+++ A  VF+ +    +
Sbjct: 416 LTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDL 475

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
             W +MI     HG   +A +L  EM + +++PD +TF  +L+AC HAGLV EG   F  
Sbjct: 476 VSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQ 535

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV-IWRTLLSACRNYENL 533
           M  ++ + P ++HY C++D+LGRAG +  A  +++  P   +DV +  TL SACR + N+
Sbjct: 536 MVNVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNI 595

Query: 534 NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
           ++G  +A+ LI  D  +SS+Y+LLSNM+A    W++ R VRS MKE  LKK PGCSWIE+
Sbjct: 596 DLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEI 655

Query: 594 EGVVHEFFVRDKSRLQVRDIY----YMLDNM 620
              +  FFV D S L +  ++    Y+ D+M
Sbjct: 656 NQKILPFFVEDNSHLHLELVFKCLSYLSDHM 686


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 209/685 (30%), Positives = 342/685 (49%), Gaps = 93/685 (13%)

Query: 20  LLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF--ARYIFFK 74
           LL++C+T  +      IHAR +  G + + +L   L++ ++         F  AR +F +
Sbjct: 29  LLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDE 88

Query: 75  YHAFREKKDPFLWNAIIKTYSHG---------------LDP----------------KEA 103
             A   +++ F WN+++  Y+                  DP                 EA
Sbjct: 89  IPA--AQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEA 146

Query: 104 LVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISL 163
           + MF  M+ +G+S  +F+ + VL +C+       G ++H  + K+   S + + N ++++
Sbjct: 147 IKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNM 206

Query: 164 YVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNS 223
           Y +CG  E AR +F++M  R   S+N+M+      G ++ A  LF++MP  +R ++SWN+
Sbjct: 207 YGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMP--DRTIVSWNA 264

Query: 224 VLNGYAQLKSGLQFAWQIFEKMPE-----RDLISWNSMLHGC-----VKCGKMDDAQALF 273
           V+ GY Q     +  W  F +M        D  +  S+L  C     V  GK   A  L 
Sbjct: 265 VIAGYNQNGLNAKALW-FFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILR 323

Query: 274 DKMP--------------------------------KRDVVSWANMIDGYAKLGRVDIAR 301
            +MP                                  +V+S+  +++GY KLG +  AR
Sbjct: 324 SRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAR 383

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
            +FD M  RDVVA  AM+ GY +NG++ +A+E+F  +       P+  ++  VLS  A L
Sbjct: 384 EMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELF-RLMIRSGPEPNSYTVAAVLSVCASL 442

Query: 362 GHIDKGVAIH----RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDH 416
             ++ G  IH    R L++   S++     +++ MY++ GS+  A +VF+++        
Sbjct: 443 ACLEYGKQIHCKAIRSLQEQSSSVSN----SIVTMYARSGSLPWARRVFDRVHWRKETVT 498

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           W +MI  LA HGLGE A  L  EM R+ ++PD ITF G+L+AC H G V EG   F+ ++
Sbjct: 499 WTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQ 558

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
             H + PE+ HY CMVD+L RAG    A+  I+ MP+EP+ + W +LLSACR ++N ++ 
Sbjct: 559 DKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLA 618

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
           E  A+ L+ +D  NS +Y  LSN+++  G WNDA ++    K++++KK  G SW  +   
Sbjct: 619 ELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNR 678

Query: 597 VHEFFVRDKSRLQVRDIYYMLDNMW 621
           VH F   D    Q   +Y     MW
Sbjct: 679 VHVFGADDVLHPQRDTVYRTAAKMW 703


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 213/679 (31%), Positives = 333/679 (49%), Gaps = 101/679 (14%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK------------YHAFRE 80
           +HA ++T+GF  NT +  +L+  +  S       +AR +F K              A+  
Sbjct: 27  VHAHILTSGFKPNTFILNRLINIYCKSSNI---TYARKLFDKIPKPDIVARTTLLSAYSS 83

Query: 81  K-----------------KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSAS 123
                             +D   +NA+I  YSHG D   AL +F  M   G   D F+ S
Sbjct: 84  SGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFS 143

Query: 124 LVLKACSRLGLIEEGLQ-IHGLLRKVAFGSDLFLQNCLISLYVRCG---------YLEFA 173
            VL A S +   E   Q +H  + K+       + N L+S YV C           +  A
Sbjct: 144 SVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASA 203

Query: 174 RQLFDKMGIRD--SVSYNSMIDGYVKSGNIESARELFDSM--PIRERNLISWNSVLNGYA 229
           R++FD+         S+ +MI GYV++ ++ +AREL D +  PI     ++WN++++GY 
Sbjct: 204 RKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPID----VAWNAMISGY- 258

Query: 230 QLKSGL-QFAWQIFEKMP----ERDLISWNSMLHGCVKCG-------------------- 264
            ++ GL + A+  F +M     + D  ++ S++  C  C                     
Sbjct: 259 -VRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTV 317

Query: 265 -----------------------KMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIAR 301
                                  +M +A+ +FDKMP RD++SW  ++ GY    R++ A 
Sbjct: 318 VEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEAN 377

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
            +F EMP+R+V+    M+ G  +NG+  + L++F+ M+ E  L P D +    ++A + L
Sbjct: 378 SIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSE-GLEPCDYAFAGAITACSVL 436

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
           G +D G  IH  + +         G ALI MYS+CG +E+A  VF  +       WNAMI
Sbjct: 437 GSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMI 496

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
             LA HG G  A +L  +M +  I PD ITF  +L AC HAGL+KEG   F+ M   + +
Sbjct: 497 AALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGI 556

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
            P   HY  ++D+L RAG    A+++I+ MP E    IW  LL+ CR + N+ +G   A 
Sbjct: 557 TPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAAD 616

Query: 542 HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
            L+ +      +Y++LSNM+A LG W++  RVR +M+ER +KK PGCSW+E+E +VH F 
Sbjct: 617 RLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVFL 676

Query: 602 VRDKSRLQVRDIYYMLDNM 620
           V D    +V+ +Y  L  +
Sbjct: 677 VDDARHPEVQAVYTYLQQL 695


>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 700

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 208/683 (30%), Positives = 344/683 (50%), Gaps = 98/683 (14%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY--IFFKYHA 77
           LL  C +   + Q+H++ +  G   ++ + TKL              +ARY  +   +  
Sbjct: 10  LLETCCSKISIPQLHSQCLKVGLAHDSFVVTKLN-----------VLYARYASLCHAHKL 58

Query: 78  FREK--KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVS---VDKFSASLVLKACSRL 132
           F E   K  +LWNA++++Y       E L +F  M  + ++    D ++ S+ LK+CS L
Sbjct: 59  FEETPCKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGL 118

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
             +E G  IHG L+K    +D+F+ + LI LY +CG +  A ++F +   +D V + S+I
Sbjct: 119 QKLELGKMIHGFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSII 178

Query: 193 DGYVKSGNIESARELFDSMPIRER------NLISW------------------------- 221
            GY ++G+ E A   F  M + E+       L+S                          
Sbjct: 179 TGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGF 238

Query: 222 -------NSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFD 274
                  NS+LN Y +  S ++ A  +F +MP +D+ISW+SM+      G   +A  LF+
Sbjct: 239 DTKLCLANSILNLYGKTGS-IRSAANLFREMPYKDIISWSSMVACYADNGAETNALNLFN 297

Query: 275 KMPKR---------------------------------------DVVSWANMIDGYAKLG 295
           +M  +                                       D+     ++D Y K  
Sbjct: 298 EMIDKRIELNRVTVISALRACASSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCF 357

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
               A  LF+ MPK+DVV+   +  GY   G + K+L +F NM       PD  +LV +L
Sbjct: 358 SPKNAIDLFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNM-LSYGTRPDAIALVKIL 416

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
           +A ++LG + + + +H ++ K  F  N   G +LI++Y+KC SI+NA KVF+ +    V 
Sbjct: 417 AASSELGIVQQALCLHAFVSKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGMRRKDVV 476

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLS-IEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
            W+++I     HG GE A  L  +M   S ++P+D+TF  +L+AC+HAGL++EG+  F +
Sbjct: 477 TWSSIIAAYGFHGQGEEALKLFYQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHV 536

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534
           M   ++L P  +HYG MVD+LGR G ++ A ++I +MPM+    +W  LL ACR ++N+ 
Sbjct: 537 MVNEYQLMPNTEHYGIMVDLLGRMGELDKALDMINEMPMQAGPHVWGALLGACRIHQNIK 596

Query: 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           +GE  A +L  +D +++  Y LLSN++     W+DA ++R+++KE   KK+ G S +E++
Sbjct: 597 IGELAALNLFLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENRFKKIVGQSMVEIK 656

Query: 595 GVVHEFFVRDKSRLQVRDIYYML 617
             VH F   D+   +   IY ML
Sbjct: 657 NEVHSFIASDRFHGESDQIYGML 679


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 200/612 (32%), Positives = 323/612 (52%), Gaps = 41/612 (6%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
            IH  +I  GF  N  +   +++ +    C  +   AR +F +   +R   D   WN+I+
Sbjct: 147 SIHGCVIRLGFESNVFVCNAVISMYGK--CKAVVH-ARKVFDEL-CYRGICDSVTWNSIV 202

Query: 92  KTYSHGLDPKEALVMFCLM-LDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAF 150
             YSH   P  A+ +F  M +  G+  D      +L  C  LGL   G Q+HG   +   
Sbjct: 203 SVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGL 262

Query: 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDS 210
             D+F+ N L+ +Y +CG +E A ++F++M  +D V++N+M+ GY ++G  E A  LF  
Sbjct: 263 VEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGK 322

Query: 211 MPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLISWNSMLHGCVKCG 264
           M     E ++++W+SV++GYAQ   G + A  +F +M       ++++  S+L  C   G
Sbjct: 323 MREEKIESDVVTWSSVISGYAQRGFGCE-AMDVFRQMCGCRCRPNVVTLMSLLSACASVG 381

Query: 265 KMDDAQALFDKMPK-----------RDVVSWANMIDGYAKLGRVDIARRLFDEM-PK-RD 311
            +   +       K            D+     +ID YAK   +++AR +FDE+ PK RD
Sbjct: 382 ALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRD 441

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
           VV    M+GGY ++G +  AL++F  M + +  + P+D ++  VL A A+L  +  G  I
Sbjct: 442 VVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQI 501

Query: 371 HRYLEKDQFSLNGKHGVA--LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
           H Y+ +     +    VA  LIDMYSK G ++ A  VF+ +   +   W +++ G  +HG
Sbjct: 502 HAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHG 561

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
             E AF +  EM + ++  D ITF  +L AC+H+G+                ++P ++HY
Sbjct: 562 RSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGM-------------DFGVDPGVEHY 608

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
            CMVD+LGRAG +  A  LI DMP+EP  V+W  LLSACR + N  + E  AK L+ + +
Sbjct: 609 ACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLSACRIHSNEELAEFAAKKLLELKA 668

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
            N  +Y LLSN++A    W D  R+  +MK   +KK+PG SW++    +  F+V D++ L
Sbjct: 669 DNDGTYTLLSNIYANARRWKDVARIGYLMKRTGIKKIPGWSWVKGRKGMETFYVGDRTHL 728

Query: 609 QVRDIYYMLDNM 620
           Q + IY  L ++
Sbjct: 729 QSQKIYETLADL 740



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 161/540 (29%), Positives = 269/540 (49%), Gaps = 36/540 (6%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHL-TTKLVASFSSSPCTPLTEFARYIFF 73
            S+ +  ++CKTL     +H + I  G + N++   T L+ ++ SS    +T     +  
Sbjct: 25  HSSTISKQQCKTLTQAKLLHQQYIINGHLLNSYTNVTNLIYTYISS--NSITN--AILLL 80

Query: 74  KYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLG 133
           + +        + WN +I+   H   P  AL +F  M     + D ++   V KAC  + 
Sbjct: 81  EKNVTPSHSSVYWWNQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACGEIS 140

Query: 134 LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM---GIRDSVSYNS 190
             E G  IHG + ++ F S++F+ N +IS+Y +C  +  AR++FD++   GI DSV++NS
Sbjct: 141 NFELGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNS 200

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLN-----GYAQLK-SGLQFAWQIFEK 244
           ++  Y        A  LF  M +    L     V+N     GY  L   G Q        
Sbjct: 201 IVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRS 260

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
               D+   N+++    KCGKM+DA  +F++M  +DVV+W  M+ GY++ GR + A  LF
Sbjct: 261 GLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLF 320

Query: 305 DEMPKR----DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
            +M +     DVV  ++++ GY + G+  +A+++F  M C     P+  +L+ +LSA A 
Sbjct: 321 GKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQM-CGCRCRPNVVTLMSLLSACAS 379

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHG---------VALIDMYSKCGSIENAIKVFEQI-- 409
           +G +  G   H Y  K  F L G+H           ALIDMY+KC S+E A  +F++I  
Sbjct: 380 VGALLHGKETHCYSVK--FILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICP 437

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS--IEPDDITFTGLLNACAHAGLVKE 467
           +D  V  W  MI G A HG    A  L  EM ++   I P+D T + +L ACA    +K 
Sbjct: 438 KDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKF 497

Query: 468 GLLCFELMRRIHKLEPELQHYG-CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           G      + R  +++ ++     C++D+  ++G ++ A+ + + M  + N V W +LL+ 
Sbjct: 498 GKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMS-KRNAVSWTSLLTG 556


>gi|414589212|tpg|DAA39783.1| TPA: hypothetical protein ZEAMMB73_012385 [Zea mays]
          Length = 590

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 202/604 (33%), Positives = 307/604 (50%), Gaps = 55/604 (9%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLV-ASFSSSPCTPLTEFARYIFF 73
           Q  L +LR  K+   + Q HA+++  G   +  L   LV A+FS SP +P    A     
Sbjct: 3   QELLQILRGLKSPRHLLQTHAQLLARGLSASPRLLPVLVSAAFSVSPSSPRQAAAAA--- 59

Query: 74  KYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFC----------LMLDNGVSVDKFSAS 123
              A          N +I+  +            C           M   GV  + F+ +
Sbjct: 60  ILGAAGSGASTVAHNTLIERLAGIGGGGGGGGRGCSAADALAAYAAMRAAGVYPNGFTFT 119

Query: 124 LVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRC---GYLEFARQLFDKM 180
            +L+AC  L  +     +HG + +  FGSD+ +QN L+++Y +C   G +  ARQ+FD+M
Sbjct: 120 FLLRACESLRRLFLCRCVHGQIVRCGFGSDVVVQNALLNVYYKCSDPGDVGIARQVFDEM 179

Query: 181 GIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQ 240
             RD VS+NS++  Y+ +G+   A ELF++MP  ERN++SWN+++  + +    +  A  
Sbjct: 180 ANRDVVSWNSIVGVYMSNGDAAGAMELFEAMP--ERNVVSWNTIVAAFTR-AGDMVSARA 236

Query: 241 IFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIA 300
           +F++MP RD ISWN M+ G    G ++ A +LFD M ++DVVSW  M+  YAK+G +D A
Sbjct: 237 VFDRMPIRDAISWNLMISGYATSGNVESAWSLFDIMDRKDVVSWTAMVSAYAKIGELDSA 296

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
           R LFD+MP +++V+ NAM+ GY  N     AL  F  M  E    PD+A+LV V+SA AQ
Sbjct: 297 RVLFDQMPDKNLVSWNAMITGYNHNLRYDDALCTFQQMMLEGRFMPDEATLVSVVSACAQ 356

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
           LG ++    I  Y+ K    +    G AL+DM++KCG +  A  VF +++      W  M
Sbjct: 357 LGSVEYCNWISSYISKSNTHITVALGNALVDMFAKCGDVGRAHLVFNKMKTRCTITWTTM 416

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           I+G A +G    A  +  +M R  +  DD  F   L ACAH GL++EG   F  M    +
Sbjct: 417 ISGFAYNGQFREALLVYNDMCREGVTLDDTVFVAALGACAHGGLLQEGWSIFNQMVEYCR 476

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           + P ++HYGC+VD+LGRA                                    + E V+
Sbjct: 477 IVPRMEHYGCIVDLLGRA-----------------------------------ELSEYVS 501

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
             ++ M+  NSS  VL+SN  A  G W+     R  M++  ++K PG S I++   VHEF
Sbjct: 502 TKIVEMEPFNSSYQVLVSNCSALEGRWDSVMDARRTMRDCGVEKTPGSSLIQVGNEVHEF 561

Query: 601 FVRD 604
             +D
Sbjct: 562 LAKD 565


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 203/672 (30%), Positives = 325/672 (48%), Gaps = 75/672 (11%)

Query: 19  LLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP------------------ 60
           L LR+  +L     +H  +IT GF    H+  +L+  +  S                   
Sbjct: 23  LPLRR-TSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKI 81

Query: 61  ----------CTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLM 110
                      +     AR +F K  A    +D  ++NA+I  +SH  D   A+ +FC M
Sbjct: 82  ARTTMVSGYCASGDITLARGVFEK--APVCMRDTVMYNAMITGFSHNNDGYSAINLFCKM 139

Query: 111 LDNGVSVDKFSASLVLKACSRLGLIE-EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCG- 168
              G   D F+ + VL   + +   E + +Q H    K   G    + N L+S+Y +C  
Sbjct: 140 KHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCAS 199

Query: 169 ---YLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVL 225
               L  AR++FD++  +D  S+ +M+ GYVK+G  +   EL + M    + L+++N+++
Sbjct: 200 SPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMK-LVAYNAMI 258

Query: 226 NGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHGCV--------------------- 261
           +GY      +  L+   ++     E D  ++ S++  C                      
Sbjct: 259 SGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDF 318

Query: 262 -------------KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
                        KCGK D+A+A+F+KMP +D+VSW  ++ GY   G +  A+ +F EM 
Sbjct: 319 SFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMK 378

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
           ++++++   M+ G   NG+  + L++F  M+ E +  P D +    + + A LG    G 
Sbjct: 379 EKNILSWMIMISGLAENGFGEEGLKLFSCMKREGF-EPCDYAFSGAIKSCAVLGAYCNGQ 437

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
             H  L K  F  +   G ALI MY+KCG +E A +VF  +       WNA+I  L  HG
Sbjct: 438 QYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHG 497

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
            G  A D+  EM +  I PD IT   +L AC+HAGLV +G   F+ M  ++++ P   HY
Sbjct: 498 HGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHY 557

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
             ++D+L R+G    A ++IE +P +P   IW  LLS CR + N+ +G   A  L G+  
Sbjct: 558 ARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIP 617

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
            +  +Y+LLSNM A  G W +  RVR +M++R +KK   CSWIE+E  VH F V D S  
Sbjct: 618 EHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHP 677

Query: 609 QVRDIYYMLDNM 620
           +   +Y  L ++
Sbjct: 678 EAEAVYIYLQDL 689



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 126/487 (25%), Positives = 212/487 (43%), Gaps = 83/487 (17%)

Query: 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQL 176
            ++++A+L L    R   ++    +HG +    F     + N LI +Y +   L +ARQL
Sbjct: 12  ANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQL 71

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQ 236
           FD++   D ++  +M+ GY  SG+I  AR +F+  P+  R+ + +N+++ G++    G  
Sbjct: 72  FDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYS 131

Query: 237 FAWQIFEKMPER----DLISWNSMLHG----------CV--------------------- 261
            A  +F KM       D  ++ S+L G          CV                     
Sbjct: 132 -AINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNAL 190

Query: 262 -----KCGK----MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR-D 311
                KC      +  A+ +FD++ ++D  SW  M+ GY K G  D+   L + M     
Sbjct: 191 VSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMK 250

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           +VA NAM+ GYV  G+  +ALE+   M     +  D+ +   V+ A A  G +  G  +H
Sbjct: 251 LVAYNAMISGYVNRGFYQEALEMVRRMVSS-GIELDEFTYPSVIRACATAGLLQLGKQVH 309

Query: 372 RY-LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA----------- 419
            Y L ++ FS +  +  +L+ +Y KCG  + A  +FE++    +  WNA           
Sbjct: 310 AYVLRREDFSFHFDN--SLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHI 367

Query: 420 --------------------MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
                               MI+GLA +G GE    L   M+R   EP D  F+G + +C
Sbjct: 368 GEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSC 427

Query: 460 AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI 519
           A  G    G      + +I   +  L     ++ +  + G +E AR +   MP   + V 
Sbjct: 428 AVLGAYCNGQQYHAQLLKI-GFDSSLSAGNALITMYAKCGVVEEARQVFRTMPC-LDSVS 485

Query: 520 WRTLLSA 526
           W  L++A
Sbjct: 486 WNALIAA 492


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 177/515 (34%), Positives = 282/515 (54%), Gaps = 14/515 (2%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHG-LL 145
           WN ++  Y      +EA  +F +M +  V     S + ++K     G ++EG+ +   LL
Sbjct: 82  WNGLVSGYIKNRMIEEARNVFEIMPERNV----VSWTAMVK-----GYVQEGMVVEAELL 132

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
                  +      +    +  G ++ AR+L+D M  +D V+  +MI G  + G ++ AR
Sbjct: 133 FWRMPERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGKDVVASTNMIGGLCREGRVDEAR 192

Query: 206 ELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGK 265
           E+FD M  RERN+I+W +++ GY Q K  +  A ++FE MPE+  +SW SML G    G+
Sbjct: 193 EIFDEM--RERNVITWTTMITGYGQNKR-VDVARKLFEVMPEKTEVSWTSMLLGYTLSGR 249

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
           ++DA+  F+ MP + V++   MI    ++G +  ARR+FD+M  RD      M+  Y R 
Sbjct: 250 IEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERK 309

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
           G+ ++ALE+F  MQ +  + P   SL+ +LS  A L  +  G  +H +L + QF  +   
Sbjct: 310 GFELEALELFAQMQRQ-GVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDGDVYV 368

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
              L+ MY KCG +  A  VF++     +  WN++I+G A HGLGE A  +  EM     
Sbjct: 369 ASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHEMPLSGT 428

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR 505
            P+ +T   +L AC++ G ++EGL  FE M     + P ++HY C VD+LGRAG ++ A 
Sbjct: 429 MPNKVTLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAM 488

Query: 506 NLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565
            LI  M ++P+  +W  LL AC+ +  L++ E  AK L  ++  N+  Y+LLS++ A   
Sbjct: 489 ELINSMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFEIEPENAGPYILLSSINASRS 548

Query: 566 MWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
            W D   +R  M+ +N+ K PGCSWIE+   VH F
Sbjct: 549 KWGDVAEMRKNMRTKNVSKFPGCSWIEVGKKVHMF 583



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 127/426 (29%), Positives = 212/426 (49%), Gaps = 35/426 (8%)

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI 182
           S  +   SR+G I E  +    LR  A GS     N ++S Y   G    ARQ+FD+M  
Sbjct: 21  SFEISRLSRIGQINEARKFFDSLRYKAIGS----WNSIVSGYFANGLPREARQMFDEMPE 76

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIF 242
           R+ VS+N ++ GY+K+  IE AR +F+ MP  ERN++SW +++ GY Q    ++ A  +F
Sbjct: 77  RNIVSWNGLVSGYIKNRMIEEARNVFEIMP--ERNVVSWTAMVKGYVQEGMVVE-AELLF 133

Query: 243 EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
            +MPER+ +SW  M  G +  G++DDA+ L+D MP +DVV+  NMI G  + GRVD AR 
Sbjct: 134 WRMPERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGKDVVASTNMIGGLCREGRVDEARE 193

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           +FDEM +R+V+    M+ GY +N     A ++F+ M         + S   +L      G
Sbjct: 194 IFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMP-----EKTEVSWTSMLLGYTLSG 248

Query: 363 HIDKGVAIHRYLE-KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
            I+        +  K   + N     A+I    + G I  A +VF+Q+ED     W  MI
Sbjct: 249 RIEDAEEFFEVMPMKPVIACN-----AMIVALGEVGEIVKARRVFDQMEDRDNATWRGMI 303

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH-- 479
                 G    A +L  +M+R  + P   +   +L+ CA    ++ G       R++H  
Sbjct: 304 KAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYG-------RQVHAH 356

Query: 480 ----KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNV 535
               + + ++     ++ +  + G +  A+ + +  P + + ++W +++S    Y +  +
Sbjct: 357 LVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSK-DIIMWNSIISG---YASHGL 412

Query: 536 GEPVAK 541
           GE   K
Sbjct: 413 GEEALK 418



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 118/245 (48%), Gaps = 19/245 (7%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           E +D   W  +IK Y       EAL +F  M   GV     S   +L  C+ L  ++ G 
Sbjct: 292 EDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGR 351

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           Q+H  L +  F  D+++ + L+++YV+CG L  A+ +FD+   +D + +NS+I GY   G
Sbjct: 352 QVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHG 411

Query: 200 NIESARELFDSMPI-----RERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN 254
             E A ++F  MP+      +  LI+  +  +   +L+ GL    +IFE M  +  ++  
Sbjct: 412 LGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGL----EIFESMESKFCVTPT 467

Query: 255 SMLHGCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDI----ARRLF 304
              + C      + GK+D A  L + M  K D   W  ++       R+D+    A++LF
Sbjct: 468 VEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLF 527

Query: 305 DEMPK 309
           +  P+
Sbjct: 528 EIEPE 532


>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 579

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 200/599 (33%), Positives = 323/599 (53%), Gaps = 54/599 (9%)

Query: 30  VNQIHARMITTG-FIKNTHLTTKLVASFSS-SPCTPLTEFARYIFFKYHAFREKKDPFLW 87
           + QIHA ++TTG F  + +   +L+AS+   +   P    AR +F K      ++    W
Sbjct: 1   MTQIHALILTTGLFFNDANSIAQLIASYGRINNIIP----ARNVFEKM----PQRSINAW 52

Query: 88  NAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRK 147
           N++I  YS    P E L ++  M+  G+  D  + ++ LKACS L  ++ G  I      
Sbjct: 53  NSMIIAYSRTNYPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVD 112

Query: 148 VAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAREL 207
             +G D+F+ + +++LY                                KSG ++ A+ +
Sbjct: 113 FGYGFDVFVVSSVLNLYA-------------------------------KSGKMDKAKIV 141

Query: 208 FDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM----PERDLISWNSMLHGCVKC 263
           FD M   +R+++SW +++ G+AQ    L  A  I+  M     E D +    ++  C   
Sbjct: 142 FDKMV--KRDVVSWTTMITGFAQSGRPLD-AIDIYRTMQKERTEGDGVVMVGLIQACTSL 198

Query: 264 GKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM 319
           G      ++   M +R    D V   ++ID YAK G++++A R+F+ +P + V++  A++
Sbjct: 199 GDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISWGALI 258

Query: 320 GGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF 379
            G+ +NG++ K L     MQ   +  PD  SL+  LSA AQ+G++  G ++H ++ K + 
Sbjct: 259 SGFAQNGFANKTLASLVEMQNSGF-KPDLVSLISSLSACAQVGNLKVGKSLHGHIVK-RL 316

Query: 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLME 439
            L+   G ALIDMY+KCG++  A  +F+QIE   +  WNAMI+   IHG G  A  L ++
Sbjct: 317 YLDKVSGTALIDMYAKCGALTFARALFDQIEPRDLILWNAMISSYGIHGDGIEALSLFLK 376

Query: 440 MERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG 499
           M+  +I PD  TF  LL+AC+H+GLV+EG   F ++    K++P  +HY CMVD+L RAG
Sbjct: 377 MKETNITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSKIQPSEKHYACMVDLLSRAG 436

Query: 500 HIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559
            +E A  LIE M ++P   IW  LLS C N++NL +GE VAK ++  +  +   YVL+SN
Sbjct: 437 QVEEAYQLIESMHIKPGLAIWVALLSGCLNHKNLLIGEMVAKKILESNPDDLGIYVLVSN 496

Query: 560 MFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
            F+    W+DA   R +MK   ++K+PG S +E+ G +  F + DK+  Q +DI  +LD
Sbjct: 497 FFSMAKKWDDAAVFRKIMKNTGMRKVPGYSAVEVNGDLQAFLMEDKNHNQYQDILQILD 555


>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 600

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 173/476 (36%), Positives = 274/476 (57%), Gaps = 10/476 (2%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS-MIDGYVKSGNIESARELFDSM 211
           ++F+ N +I  +V CGY   A Q +  M    +V   S      VK+     A EL   +
Sbjct: 101 NVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMV 160

Query: 212 PIR------ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGK 265
                    E +L    ++++ Y++L+  L  A ++F++M ERD  +W +ML    + G 
Sbjct: 161 HCHIWKKGFESHLFVQTALVDFYSKLEI-LSEARKVFDEMCERDAFAWTAMLSALARVGD 219

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
           MD A+ LF++MP+R+  +W  MIDGY +LG V+ A  LF++MP +D+++   M+  Y +N
Sbjct: 220 MDSARKLFEEMPERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQN 279

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
                AL I+  M+    + PD+ ++  V SA A +G ++ G  IH Y+     +L+   
Sbjct: 280 KQYQDALAIYSEMRLNGII-PDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYI 338

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
           G AL+DMY+KCGS++ ++ +F ++ D ++  WNA+I GLA+HG  E A  +   MER  I
Sbjct: 339 GSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKI 398

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR 505
            P+ +TF  +L+AC HAGLV EG   F  M R + + P+++HYGCMVD+L ++G++  A 
Sbjct: 399 MPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEAL 458

Query: 506 NLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565
            LI+ M  EPN +IW  LL+ C+ + N  + E   + L+ ++  NS  Y LL +M+A   
Sbjct: 459 ELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEK 518

Query: 566 MWNDARRVRSMMKERNL-KKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            W +   +RSMMKE+ + KK PG SWIELEG +H+F     S      IY++L  +
Sbjct: 519 DWMEVAHIRSMMKEKGVEKKYPGSSWIELEGTIHQFSASADSHPDSDKIYFILTEL 574



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 129/478 (26%), Positives = 250/478 (52%), Gaps = 61/478 (12%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLV-ASFSSSPCTPLTEFARYIFF 73
           Q+ L  ++ C T+N+++ + A MI T  I++  L  + + ASF+ +           + +
Sbjct: 40  QTLLNRIKNCSTINELHGLCASMIKTNAIQDCFLVHQFISASFALNS----------VHY 89

Query: 74  KYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLD-NGVSVDKFSASLVLKACS 130
              AF + ++P  F++NA+IK + +   P  AL  +  ML+ + V    ++ S ++KAC+
Sbjct: 90  PVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACT 149

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
            +  +E G  +H  + K  F S LF+Q  L+  Y +   L  AR++FD+M  RD+ ++ +
Sbjct: 150 FMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTA 209

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL 250
           M+    + G+++SAR+LF+ MP  ERN  +WN++++GY +L   ++ A  +F +MP +D+
Sbjct: 210 MLSALARVGDMDSARKLFEEMP--ERNTATWNTMIDGYTRL-GNVESAELLFNQMPTKDI 266

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKM------PKR------------------------- 279
           ISW +M+    +  +  DA A++ +M      P                           
Sbjct: 267 ISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHY 326

Query: 280 --------DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKA 331
                   DV   + ++D YAK G +D++  +F ++  +++   NA++ G   +GY+ KA
Sbjct: 327 VMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKA 386

Query: 332 LEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD-QFSLNGKHGVALI 390
           L +F  M+ E  + P+  + + +LSA    G +D+G +    + +D     + +H   ++
Sbjct: 387 LRMFAIMEREKIM-PNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMV 445

Query: 391 DMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP 447
           DM SK G +  A+++ + +E + +   W A++NG  +HG  E+A D + ++  + +EP
Sbjct: 446 DMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQL--MILEP 501


>gi|225439799|ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Vitis vinifera]
          Length = 667

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 204/619 (32%), Positives = 325/619 (52%), Gaps = 31/619 (5%)

Query: 20  LLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           L++ C   + L    Q+HAR++ +    +  L +KL+  +S S          +++  + 
Sbjct: 40  LIQHCSDHRLLRQAKQLHARIVLSSLTPDNFLASKLITFYSKS---------NHLYEAHK 90

Query: 77  AFRE--KKDPFLWNAIIKTYS-HGLD--PKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
            F +   K+ F WNA++  YS H +       L          +  D F+ + VLKA S 
Sbjct: 91  VFDKILDKNIFSWNAMLIGYSIHNMHVHTLNLLSSLLPSYSLTLKPDNFTITCVLKALSV 150

Query: 132 L---GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY 188
           L    ++ + +Q    + +  F SD+F+ N LI+ Y RC     AR LFD+M  RD VS+
Sbjct: 151 LFPDSILAKEVQC--FVLRHGFDSDIFVVNALITYYSRCDEYGIARILFDRMHDRDIVSW 208

Query: 189 NSMIDGYVKSGNIESARELF----DSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQI 241
           NSMI GY + G  E  +EL+    DS  +R  N ++  SVL   AQ   L  G++    I
Sbjct: 209 NSMIAGYSQGGFYEDCKELYRKMLDSTGLRP-NGVTVVSVLQACAQTNDLVFGMKVHQFI 267

Query: 242 FEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIAR 301
            E+  E D+ + NS++    KCG +D A+ LF++M  +D V++ +++ GY   G VD A 
Sbjct: 268 IERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVTYGSIVSGYMTHGFVDKAM 327

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
            LF EM    +   NA++ G V+N  +   LE+   MQ E    P+  +L  +L   +  
Sbjct: 328 DLFREMKNPRLSTWNAVISGLVQNNCNEGILELVQEMQ-EFGFRPNAVTLSSILPTFSCF 386

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
            ++  G AIH Y  ++ ++ N     ++ID Y+K G +  A  VF+Q +D S+  W A+I
Sbjct: 387 SNLKGGKAIHAYAIRNGYAHNIYVATSIIDAYAKLGFLRGAQWVFDQSKDRSLIVWTAII 446

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
           +  + HG    A  L  +M     +PD +TFT +L ACAH+G+V E    F+ M   +  
Sbjct: 447 SAYSAHGDANAALRLFGDMLSNGTQPDPVTFTAVLAACAHSGMVNEAWKIFDEMFLKYGF 506

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
           +P ++HY CMV +L RAG +  A   I  MP+EPN  +W  LL+      ++ +G+ V  
Sbjct: 507 QPCVEHYACMVGVLSRAGMLSEAAEFICKMPIEPNAKVWGALLNGVSVSGDVELGKFVCD 566

Query: 542 HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
           HL  M+  N+ +YV+++N+++  G W +A  +R  MK+  LKK+PG SWIE  G +  F 
Sbjct: 567 HLFNMEPENTGNYVIMANLYSQAGRWEEAENIREKMKKIGLKKIPGTSWIETSGGLRSFI 626

Query: 602 VRDKSRLQVRDIYYMLDNM 620
            RD S  +  +IY ML+ +
Sbjct: 627 ARDVSSERSEEIYGMLEGL 645


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 189/580 (32%), Positives = 299/580 (51%), Gaps = 49/580 (8%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           + D  +  +I+  Y+      +  + F    D  V  ++++ S ++ A S  G I+  + 
Sbjct: 255 ESDVVIGTSILNVYTRDASALDIAIKF---FDGMVERNEYTWSTMIAALSHGGRIDAAIA 311

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           ++G     +  S    Q  L++   RCG +  AR LF+++     VS+N+MI GY+++G 
Sbjct: 312 VYGRDPVKSIPS----QTALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGM 367

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQ------------------------------ 230
           ++ A+ELFD MP R  N ISW  ++ GYAQ                              
Sbjct: 368 VDEAKELFDRMPFR--NTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSF 425

Query: 231 --------LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV 282
                   L++G Q      +   + +    N+++    KC  M+  + +F++M  +D V
Sbjct: 426 LACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTV 485

Query: 283 SWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
           SW + I    +   ++ AR +FD M  RDVV+   ++  Y +     +A+E F  M  E 
Sbjct: 486 SWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHE- 544

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENA 402
           +  P+   L I+LS    LG    G  IH    K           AL+ MY KCG  ++ 
Sbjct: 545 HEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCADSH 604

Query: 403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
            KVF+ +E+  +  WN  I G A HGLG  A  +   ME + + P+++TF GLLNAC+HA
Sbjct: 605 -KVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHA 663

Query: 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRT 522
           GLV EG   F+ M R + L P L+HY CMVD+LGR G ++ A   I DMP+EP+ VIW  
Sbjct: 664 GLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSA 723

Query: 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
           LL AC+ ++N  +G   A+ L   + SN+ +YV+LSN+++ LGMW +   +R +MK+R +
Sbjct: 724 LLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGV 783

Query: 583 KKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWT 622
            K PGCSW+++   VH F   DK   ++ +I Y L +++T
Sbjct: 784 SKEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYT 823



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/383 (30%), Positives = 193/383 (50%), Gaps = 15/383 (3%)

Query: 145 LRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESA 204
           +R V    D    +  I    R G L  AR++FD M  RD +++NSMI  Y  SG +E A
Sbjct: 24  VRSVHRALDKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDA 83

Query: 205 RELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCG 264
           R LFD+  I   N+ +   +L+GYA+L   L  A ++F+ MPER+ ++WN+M+   V+ G
Sbjct: 84  RILFDA--ISGGNVRTATILLSGYARLGRVLD-ARRVFDGMPERNTVAWNAMVSCYVQNG 140

Query: 265 KMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVR 324
            +  A+ LFD MP RDV SW +M+ GY    ++  A  LF +MP+R++V    M+ GYVR
Sbjct: 141 DITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVR 200

Query: 325 NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK 384
                K  +IF  M  E    PD ++   VLSA+  L  +     +   + K  F  +  
Sbjct: 201 IEQHGKGWDIFRMMHHE-GASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVV 259

Query: 385 HGVALIDMYSK-CGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
            G +++++Y++   +++ AIK F+ + + +   W+ MI  L+  G  + A  +       
Sbjct: 260 IGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVK 319

Query: 444 SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503
           SI       T LL   A  G + E  + FE +      +P +  +  M+    + G ++ 
Sbjct: 320 SIPSQ----TALLTGLARCGRITEARILFEQIP-----DPIVVSWNAMITGYMQNGMVDE 370

Query: 504 ARNLIEDMPMEPNDVIWRTLLSA 526
           A+ L + MP   N + W  +++ 
Sbjct: 371 AKELFDRMPFR-NTISWAGMIAG 392



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 122/491 (24%), Positives = 220/491 (44%), Gaps = 105/491 (21%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D   WN++I  Y +    ++A ++F          D  S                    
Sbjct: 62  RDIIAWNSMISAYCNSGMLEDARILF----------DAIS-------------------- 91

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
                    G ++     L+S Y R G +  AR++FD M  R++V++N+M+  YV++G+I
Sbjct: 92  ---------GGNVRTATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDI 142

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
             AR LFD+MP   R++ SWNS++ GY   +  +  AW +F++MP+R+L++W  M+ G V
Sbjct: 143 TMARRLFDAMP--SRDVTSWNSMVTGYCHSRQMVD-AWNLFKQMPQRNLVTWTVMISGYV 199

Query: 262 KCGKMDDAQALFDKM-------PKRDVVSWANMIDGYAKLGRVDIARRLFDEMP-KRDVV 313
           +  +      +F  M        + +  S  + + G   LG +++ R L  +   + DVV
Sbjct: 200 RIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVV 259

Query: 314 ACNAMMGGYVRNGYSMK-ALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
              +++  Y R+  ++  A++ FD M     +  ++ +   +++A++  G ID  +A+  
Sbjct: 260 IGTSILNVYTRDASALDIAIKFFDGM-----VERNEYTWSTMIAALSHGGRIDAAIAV-- 312

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN---------- 422
           Y      S+  +   AL+   ++CG I  A  +FEQI D  V  WNAMI           
Sbjct: 313 YGRDPVKSIPSQ--TALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDE 370

Query: 423 ---------------------GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461
                                G A +G  E A DLL  + R  + P   + T    AC+H
Sbjct: 371 AKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSH 430

Query: 462 AGLVKEGLLCFELMRRIHKLEP----ELQHYGC--MVDILGRAGHIEAARNLIEDMPMEP 515
            G ++ G       R++H L      +   Y C  ++ + G+  ++E  R +   M ++ 
Sbjct: 431 IGALETG-------RQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVK- 482

Query: 516 NDVIWRTLLSA 526
           + V W + ++A
Sbjct: 483 DTVSWNSFIAA 493


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  322 bits (824), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 189/597 (31%), Positives = 314/597 (52%), Gaps = 63/597 (10%)

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           D F+WN II+ Y++    +EA+  +  M   G+  D F+   V+KAC  L  +  G ++H
Sbjct: 88  DTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACGELLALMVGQKVH 147

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
           G L K+ F  D+++ N LI +Y++ G++E A ++FD+M +RD VS+NSM+ GY   G+  
Sbjct: 148 GKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGL 207

Query: 203 SARELFDSMPIRERN------LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
           S+   F  M +R  N      +IS     +    L+SG++   Q+     E D++   S+
Sbjct: 208 SSLMCFKEM-LRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSL 266

Query: 257 LHGCVKCGKMDDAQALFDKMPKR--------------------DVVSWANM--------- 287
           +    KCGK+D A+ +F+++  +                    DV++  N+         
Sbjct: 267 IDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQEDDKVIPDVITMINLLPSCSQSGA 326

Query: 288 --------------------------IDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
                                     +D Y K G + +A  +F++M ++++V+ N M+  
Sbjct: 327 LLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAA 386

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
           YV+N    +AL++F ++  E  L PD  ++  VL A+A+L    +G  IH Y+ K     
Sbjct: 387 YVQNEQYKEALKMFQHILNEP-LKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGS 445

Query: 382 NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEME 441
           N     A++ MY+KCG ++ A + F+ +    V  WN MI   AIHG G  +     EM 
Sbjct: 446 NTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMR 505

Query: 442 RLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHI 501
               +P+  TF  LL AC+ +GL+ EG   F  M+  + ++P ++HYGCM+D+LGR G++
Sbjct: 506 GKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNL 565

Query: 502 EAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF 561
           + A+  IE+MP+ P   IW +LL+A RN+ ++ + E  A+H++ +   N+  YVLLSNM+
Sbjct: 566 DEAKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAARHILSLKHDNTGCYVLLSNMY 625

Query: 562 AGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           A  G W D  R++ +MKE+ L K  GCS +++ G    F  +D+S      IY +LD
Sbjct: 626 AEAGRWEDVDRIKYLMKEQGLVKTVGCSMVDINGRSESFINQDRSHAHTNLIYDVLD 682



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 171/364 (46%), Gaps = 39/364 (10%)

Query: 194 GYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDL 250
           G+V+SG + +A ++F+ M     +   WN ++ GY      +  + F +++  +    D 
Sbjct: 67  GFVESGLMGNALDMFEKM--NHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDN 124

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDE 306
            ++  ++  C +   +   Q +  K+ K     DV     +ID Y K+G +++A ++FDE
Sbjct: 125 FTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDE 184

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           MP RD+V+ N+M+ GY  +G  + +L  F  M   L    D   ++  L A +    +  
Sbjct: 185 MPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEM-LRLGNKADRFGMISALGACSIEHCLRS 243

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G+ IH  + + +  L+     +LIDMY KCG ++ A +VF +I   ++  WNAMI G+  
Sbjct: 244 GMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGM-- 301

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE---- 482
                         E   + PD IT   LL +C+ +G + EG       + IH       
Sbjct: 302 -------------QEDDKVIPDVITMINLLPSCSQSGALLEG-------KSIHGFAIRKM 341

Query: 483 --PELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
             P L     +VD+ G+ G ++ A ++   M  E N V W T+++A    E       + 
Sbjct: 342 FLPYLVLETALVDMYGKCGELKLAEHVFNQMN-EKNMVSWNTMVAAYVQNEQYKEALKMF 400

Query: 541 KHLI 544
           +H++
Sbjct: 401 QHIL 404



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 107/442 (24%), Positives = 186/442 (42%), Gaps = 101/442 (22%)

Query: 164 YVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP---IRERN--- 217
           +V  G +  A  +F+KM   D+  +N +I GY  +G  + A + +  M    IR  N   
Sbjct: 68  FVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTF 127

Query: 218 ----------------------LISWNSVLNGYA-------QLKSG-LQFAWQIFEKMPE 247
                                 LI     L+ Y         LK G ++ A ++F++MP 
Sbjct: 128 PFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPV 187

Query: 248 RDLISWNSMLHG----------------------------------------CVKCGKMD 267
           RDL+SWNSM+ G                                        C++ G   
Sbjct: 188 RDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEI 247

Query: 268 DAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGY 327
             Q +  ++ + D++   ++ID Y K G+VD A R+F+ +  +++VA NAM+GG      
Sbjct: 248 HCQVIRSEL-ELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGG------ 300

Query: 328 SMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV 387
                     MQ +  + PD  +++ +L + +Q G + +G +IH +  +  F        
Sbjct: 301 ----------MQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLET 350

Query: 388 ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP 447
           AL+DMY KCG ++ A  VF Q+ + ++  WN M+     +   + A  +   +    ++P
Sbjct: 351 ALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKP 410

Query: 448 DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY--GCMVDILGRAGHIEAAR 505
           D IT   +L A A      EG    ++   I KL      +    +V +  + G ++ AR
Sbjct: 411 DAITIASVLPAVAELASRSEGK---QIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAR 467

Query: 506 NLIEDMPMEPNDVI-WRTLLSA 526
              + M  +  DV+ W T++ A
Sbjct: 468 EFFDGMVCK--DVVSWNTMIMA 487



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 19/142 (13%)

Query: 396 CGSIE-----NAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
           CG +E     NA+ +FE++       WN +I G   +GL + A D    ME   I  D+ 
Sbjct: 66  CGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNF 125

Query: 451 TFTGLLNACAHAGLVKEGLLCFELMRRIH----KLEPELQHYGC--MVDILGRAGHIEAA 504
           TF  ++ AC         LL   + +++H    K+  +L  Y C  ++D+  + G IE A
Sbjct: 126 TFPFVIKACGE-------LLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELA 178

Query: 505 RNLIEDMPMEPNDVIWRTLLSA 526
             + ++MP+  + V W +++S 
Sbjct: 179 EKVFDEMPVR-DLVSWNSMVSG 199


>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 550

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 183/567 (32%), Positives = 292/567 (51%), Gaps = 71/567 (12%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L      + ++Q HA +I +G   +    T+L+A  + SP       A+ IF   H    
Sbjct: 18  LTALTATSHLHQAHAHLIVSGLASHPFTVTRLLACAALSPSASDLPHAKTIFLHTH---- 73

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
              PF++N II   S  LD   ++  +  ML  G   D F+   ++K+ S       G Q
Sbjct: 74  NPSPFMFNTIIMASSRTLD---SVTFYVCMLHAGHFPDNFTFPFLIKSSSASPTSLLGHQ 130

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  + K     D+F+ N +I+L                               Y     
Sbjct: 131 LHAHVVKFGLDRDVFVVNNMIAL-------------------------------YSSFRE 159

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
           + SAR++FD                                 E     D++SW +++ G 
Sbjct: 160 LRSARKVFD---------------------------------ESYSLVDVVSWTTLITGF 186

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
              G++D+A+ +FD MP ++ VSW  MI GYA   R++ AR+LFDEMP RD  + +AM+ 
Sbjct: 187 SNSGQIDEARKIFDLMPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVS 246

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           GY + G   +AL++F  M     + P++A+LV  +SA AQL  +++G  +H Y+++ +  
Sbjct: 247 GYSQLGMCNEALDLFMEMVTGDKMIPNEAALVSAVSACAQLRALEEGRWLHSYIKEKKLR 306

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
           +N   G  L+DMY KCGSI +A  VF  + + +V+ WN+MI GLA++G G+ A  L  +M
Sbjct: 307 INVTLGTVLLDMYGKCGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALALFWKM 366

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500
           + +   P+ ITF  LL  C+H+GL+ EG   F +M +++ ++P+L+HYGCMVD+LGRAG 
Sbjct: 367 QFVGPSPNAITFIALLTGCSHSGLITEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGL 426

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560
           ++ A + +E MPM+P+  +W  L+ ACR +  + +GE + K LI ++  +   Y LL N+
Sbjct: 427 VKEALDFVEKMPMKPHSELWGALVGACRIHGQVELGEELGKRLIDLEPHHGGRYALLCNI 486

Query: 561 FAGLGMWNDARRVRSMMKERNLKKLPG 587
           FA    W+D   VR + K R + K PG
Sbjct: 487 FAAAQRWDDVAMVRDLEKGRKVLKNPG 513


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 211/639 (33%), Positives = 326/639 (51%), Gaps = 45/639 (7%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF------- 72
           LLR   +L      H  ++ +     T L   LV++++      L E AR +F       
Sbjct: 26  LLRSAPSLPGARAAHGCVLKSPVAGETFLLNTLVSTYAR--LGRLRE-ARRVFDGIPLRN 82

Query: 73  -FKYHA-----------------FREKKDP--FLWNAIIKTYS-HGLD-PKEALVMFCLM 110
            F Y+A                 F    DP    +NA++   + HG     +AL     M
Sbjct: 83  TFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAM 142

Query: 111 LDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYL 170
             +   ++ +S +  L AC+    +  G Q+HGL+ +     D+ +   L+ +Y +C   
Sbjct: 143 HADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERP 202

Query: 171 EFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR-----ERNLISWNSVL 225
             AR++FD M  R+ VS+NS+I  Y ++G +  A  LF  M        E  L S  S  
Sbjct: 203 VDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSAC 262

Query: 226 NGYAQLKSGLQFAWQIFEKMPERD-LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSW 284
            G A  + G Q    + ++   RD ++  N+++    KCG+  +A+ +FD MP R VVS 
Sbjct: 263 AGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSE 322

Query: 285 ANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYL 344
            +++ GYAK   V+ A+ +F +M +++V+A N ++  Y +NG   +A+ +F  ++ +  +
Sbjct: 323 TSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRD-SI 381

Query: 345 HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN-GKH-----GVALIDMYSKCGS 398
            P   +   VL+A   +  +  G   H ++ K+ F  + G       G +L+DMY K GS
Sbjct: 382 WPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGS 441

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
           I++  KVFE++       WNAMI G A +G  + A  L   M   +  PD +T  G+L+A
Sbjct: 442 IDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSA 501

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
           C H+GLV EG   F  M   H + P   HY CMVD+LGRAGH++ A  LI+DMP EP+ V
Sbjct: 502 CGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSV 561

Query: 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578
           +W +LL ACR ++N+ +GE  A  L  +D  NS  YVLLSNM+A +G W D  RVR  MK
Sbjct: 562 LWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMK 621

Query: 579 ERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           +R + K PGCSWIE+   ++ F  RD       +I+  L
Sbjct: 622 DRGVSKQPGCSWIEIGSKMNVFLARDNRHPCRNEIHSTL 660


>gi|242062638|ref|XP_002452608.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
 gi|241932439|gb|EES05584.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
          Length = 485

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 154/367 (41%), Positives = 232/367 (63%), Gaps = 1/367 (0%)

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
            S++    + G++ DA+ +FD MP R VV+W  ++D   + G +D A  +F EMP+R+VV
Sbjct: 99  TSLIRAYARLGRVCDARKVFDGMPDRTVVTWNVLLDALVRDGDLDAAWEVFVEMPQRNVV 158

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
           + N ++ G+ RNG++ +A+++F  M     L PD+A++V  +SA+  +G +  G + H Y
Sbjct: 159 SWNTIIAGFTRNGWAQEAVDLFVEMTVAYGLAPDEATMVGFVSAVRDIGLLGIGKSAHGY 218

Query: 374 LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
           + + +FSL+G  GVALI MY++CGS+  A   F  +   +V+HW ++I G A HG  E A
Sbjct: 219 VLRREFSLDGALGVALISMYTRCGSMGAAHSCFLSVTTKNVEHWTSLIAGFAAHGQPEKA 278

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493
             L  EM R+ IEP+ +TF  +LNAC H GLV EG   F+LMR +  + P +QHYGC+VD
Sbjct: 279 LRLFAEMRRVGIEPNGVTFVAVLNACNHGGLVSEGFKYFDLMRSM-GIRPMIQHYGCLVD 337

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS 553
           +LGRAG ++ A NL  ++P +P  VIW +LL+AC ++ ++ + E  A  L     S+ SS
Sbjct: 338 LLGRAGFLKEAFNLASNLPEDPGFVIWSSLLAACHSHGDVEMAELTASKLADAKPSHGSS 397

Query: 554 YVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
           YVLLSN +A    W D RR R  M+E  + K PG SWIE++G VH F   DK  ++  DI
Sbjct: 398 YVLLSNTYARAKQWEDLRRTRRRMEEHGVTKKPGLSWIEVDGGVHSFATADKLHMESEDI 457

Query: 614 YYMLDNM 620
           Y ML+++
Sbjct: 458 YQMLEDL 464



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 152/324 (46%), Gaps = 20/324 (6%)

Query: 125 VLKACSRL-GLIEEGLQIHGLLRKVAFG---SDLFLQNCLISLYVRCGYLEFARQLFDKM 180
            L AC+RL   + E  QIH LL K       SD+ +   LI  Y R G +  AR++FD M
Sbjct: 62  ALAACARLPAAVAEAEQIHALLVKSGVPRTVSDVQVSTSLIRAYARLGRVCDARKVFDGM 121

Query: 181 GIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQ 240
             R  V++N ++D  V+ G++++A E+F  MP  +RN++SWN+++ G+ +     Q A  
Sbjct: 122 PDRTVVTWNVLLDALVRDGDLDAAWEVFVEMP--QRNVVSWNTIIAGFTR-NGWAQEAVD 178

Query: 241 IFEKMP--------ERDLISWNSMLH--GCVKCGKMDDAQALFDKMPKRDVVSWANMIDG 290
           +F +M         E  ++ + S +   G +  GK      L  +      +  A +I  
Sbjct: 179 LFVEMTVAYGLAPDEATMVGFVSAVRDIGLLGIGKSAHGYVLRREFSLDGALGVA-LISM 237

Query: 291 YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
           Y + G +  A   F  +  ++V    +++ G+  +G   KAL +F  M+  + + P+  +
Sbjct: 238 YTRCGSMGAAHSCFLSVTTKNVEHWTSLIAGFAAHGQPEKALRLFAEMR-RVGIEPNGVT 296

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI- 409
            V VL+A    G + +G      +         +H   L+D+  + G ++ A  +   + 
Sbjct: 297 FVAVLNACNHGGLVSEGFKYFDLMRSMGIRPMIQHYGCLVDLLGRAGFLKEAFNLASNLP 356

Query: 410 EDGSVDHWNAMINGLAIHGLGELA 433
           ED     W++++     HG  E+A
Sbjct: 357 EDPGFVIWSSLLAACHSHGDVEMA 380



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 107/239 (44%), Gaps = 21/239 (8%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLM-LDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
           WN II  ++     +EA+ +F  M +  G++ D+ +    + A   +GL+  G   HG +
Sbjct: 160 WNTIIAGFTRNGWAQEAVDLFVEMTVAYGLAPDEATMVGFVSAVRDIGLLGIGKSAHGYV 219

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
            +  F  D  L   LIS+Y RCG +  A   F  +  ++   + S+I G+   G  E A 
Sbjct: 220 LRREFSLDGALGVALISMYTRCGSMGAAHSCFLSVTTKNVEHWTSLIAGFAAHGQPEKAL 279

Query: 206 ELFDSMPIR--ERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
            LF  M     E N +++ +VLN       +  G ++ + +   M  R +I      +GC
Sbjct: 280 RLFAEMRRVGIEPNGVTFVAVLNACNHGGLVSEGFKY-FDLMRSMGIRPMIQH----YGC 334

Query: 261 V-----KCGKMDDAQALFDKMPK-RDVVSWANMIDGYAKLGRVDIAR----RLFDEMPK 309
           +     + G + +A  L   +P+    V W++++      G V++A     +L D  P 
Sbjct: 335 LVDLLGRAGFLKEAFNLASNLPEDPGFVIWSSLLAACHSHGDVEMAELTASKLADAKPS 393


>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 697

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 173/476 (36%), Positives = 275/476 (57%), Gaps = 10/476 (2%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS-MIDGYVKSGNIESARELFDSM 211
           ++F+ N +I  +V CGY   A Q +  M    +V   S      VK+     A EL   +
Sbjct: 198 NVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMV 257

Query: 212 PIR------ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGK 265
                    E +L    ++++ Y++L+  L  A ++F++M ERD  +W +M+    + G 
Sbjct: 258 HCHIWKKGFESHLFVQTALVDFYSKLEI-LSEARKVFDEMCERDAFAWTAMVSALARVGD 316

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
           MD A+ LF++MP+R+  +W  MIDGYA+LG V+ A  LF++MP +D+++   M+  Y +N
Sbjct: 317 MDSARKLFEEMPERNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQN 376

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
                AL I+  M+    + PD+ ++  V SA A +G ++ G  IH Y+     +L+   
Sbjct: 377 KQYQDALAIYSEMRLNGII-PDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYI 435

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
           G AL+DMY+KCGS++ ++ +F ++ D ++  WNA+I GLA+HG  E A  +   MER  I
Sbjct: 436 GSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKI 495

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR 505
            P+ +TF  +L+AC HAGLV EG   F  M R + + P+++HYGCMVD+L ++G++  A 
Sbjct: 496 MPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEAL 555

Query: 506 NLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565
            LI+ M  EPN +IW  LL+ C+ + N  + E   + L+ ++  NS  Y LL +M+A   
Sbjct: 556 ELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEK 615

Query: 566 MWNDARRVRSMMKERNL-KKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            W +   +RSMMKE+ + KK PG SWIELEG +H+F     S      IY++L  +
Sbjct: 616 DWMEVAHIRSMMKEKGVEKKYPGSSWIELEGTIHQFSASADSHPDSDKIYFVLTEL 671



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 135/487 (27%), Positives = 256/487 (52%), Gaps = 64/487 (13%)

Query: 9   QP--CNSTQSTLL-LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLV-ASFSSSPCTPL 64
           QP  C S + TLL  ++ C T+N+++ + A MI T  I++  L  + + ASF+ +     
Sbjct: 128 QPPSCPSFKQTLLNRIKNCSTINELHGLCASMIKTNAIQDCFLVHQFISASFALNS---- 183

Query: 65  TEFARYIFFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLD-NGVSVDKFS 121
                 + +   AF + ++P  F++NA+IK + +   P  AL  +  ML+ + V    ++
Sbjct: 184 ------VHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYT 237

Query: 122 ASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
            S ++KAC+ +  +E G  +H  + K  F S LF+Q  L+  Y +   L  AR++FD+M 
Sbjct: 238 FSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMC 297

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQI 241
            RD+ ++ +M+    + G+++SAR+LF+ MP  ERN  +WN++++GYA+L   ++ A  +
Sbjct: 298 ERDAFAWTAMVSALARVGDMDSARKLFEEMP--ERNTATWNTMIDGYARL-GNVESAELL 354

Query: 242 FEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM------PKR---------------- 279
           F +MP +D+ISW +M+    +  +  DA A++ +M      P                  
Sbjct: 355 FNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGAL 414

Query: 280 -----------------DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGY 322
                            DV   + ++D YAK G +D++  +F ++  +++   NA++ G 
Sbjct: 415 ELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGL 474

Query: 323 VRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD-QFSL 381
             +GY+ KAL +F  M+ E  + P+  + + +LSA    G +D+G +    + +D     
Sbjct: 475 AVHGYAEKALRMFAIMERE-KIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRP 533

Query: 382 NGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
           + +H   ++DM SK G +  A+++ + +E + +   W A++NG  +HG  E+A D + ++
Sbjct: 534 DIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQL 593

Query: 441 ERLSIEP 447
             + +EP
Sbjct: 594 --MILEP 598


>gi|297744236|emb|CBI37206.3| unnamed protein product [Vitis vinifera]
          Length = 664

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 169/488 (34%), Positives = 278/488 (56%), Gaps = 32/488 (6%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN 217
           N ++   +R G LE AR++F++M ++  VS+N MI GY +   +E AR LFD M   +RN
Sbjct: 173 NSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLFDGMG--DRN 230

Query: 218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISW------------------------ 253
           +++W S+++GY +    +Q  + +F+KMPER+++SW                        
Sbjct: 231 VVTWTSMISGYCR-AGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALNSMSYNT 289

Query: 254 ---NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
              NSM++G ++ G+++ AQ+LFD +P RD +SW +MI+GY  +G++  A  LF+ MP R
Sbjct: 290 QSCNSMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMINGYFNVGQIAKACYLFNNMPDR 349

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
           D VA   M+ G+V+N    +A  +F  M+ +  + P +++  I+L A   + ++D+G   
Sbjct: 350 DAVAWTVMVSGHVQNELFAEATYLFSEMRVK-GVSPLNSTFSILLGAAGAMAYLDQGRQF 408

Query: 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
           H  L K QF  +     +LI MY+KCG I +A  +F ++    +  WN+MI G + HGL 
Sbjct: 409 HCLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMISRDLISWNSMIMGFSHHGLT 468

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
             A  +   M      P+ +TF G+L+AC+HAGL+ +G   F+ M  +  ++P+L+HY C
Sbjct: 469 SEALKVFEAMLTSGTHPNSVTFLGILSACSHAGLLNQGWELFDAMSDVFAIQPQLEHYVC 528

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACR-NYENLNVGEPVAKHLIGMDSS 549
           MV++LGRAG +E A   I  +P EP+  IW  LL  C     N  V    AK L+ +D  
Sbjct: 529 MVNLLGRAGKVEEAEEFISKLPFEPDLTIWGALLGVCGFGMINTGVARRAAKRLLELDPL 588

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQ 609
           N+ ++V+L N+ A +G   +  ++R  M  + ++K+PGCSWI L+G  + F   D+   Q
Sbjct: 589 NAPAHVVLCNIHASIGQRAEEGQLRKEMGLKGVRKVPGCSWILLKGEPYVFLSGDRIHPQ 648

Query: 610 VRDIYYML 617
             ++  +L
Sbjct: 649 ADEMLSLL 656



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 171/329 (51%), Gaps = 28/329 (8%)

Query: 201 IESARELFDSMPIRE--RNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSML 257
           +  AR + D MP R     ++ W S+L+ ++  K+G +  A  +FE MPER+++++N+ML
Sbjct: 57  LREARHMLDEMPNRGVLDRVVCWTSLLSKFS--KNGFIDEARALFEIMPERNVVTYNAML 114

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNA 317
            G V+CG++ DA   F++MP+R+VVSW +++ G A  GR+  AR LF+ MP+R+VV+ N+
Sbjct: 115 SGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVMPERNVVSWNS 174

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           M+ G +R+G   +A  +F+ M  +        S  ++++  A+   +++     R L   
Sbjct: 175 MLVGLIRSGQLEEARRVFNEMPVK-----SQVSWNVMIAGYAEHSRMEEA----RVLFDG 225

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLL 437
               N     ++I  Y + G+++    +F+++ + +V  W AMI G A +G  + A +  
Sbjct: 226 MGDRNVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALN-- 283

Query: 438 MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
                 S+  +  +   ++N     G +++    F+ +    K+      +  M++    
Sbjct: 284 ------SMSYNTQSCNSMINGYIRIGQLEKAQSLFDTIPVRDKIS-----WTSMINGYFN 332

Query: 498 AGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
            G I  A  L  +MP + + V W  ++S 
Sbjct: 333 VGQIAKACYLFNNMP-DRDAVAWTVMVSG 360



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 102/431 (23%), Positives = 184/431 (42%), Gaps = 107/431 (24%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE---- 137
           K    WN +I  Y+     +EA V+F  M D  V       S++   C R G ++E    
Sbjct: 198 KSQVSWNVMIAGYAEHSRMEEARVLFDGMGDRNVVT---WTSMISGYC-RAGNVQEGYCL 253

Query: 138 -----------------GLQIHGLLRKVAFGSDLFLQNC--LISLYVRCGYLEFARQLFD 178
                            G   +G  ++         Q+C  +I+ Y+R G LE A+ LFD
Sbjct: 254 FQKMPERNVVSWTAMIGGFAWNGFYKEALNSMSYNTQSCNSMINGYIRIGQLEKAQSLFD 313

Query: 179 KMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ-------- 230
            + +RD +S+ SMI+GY   G I  A  LF++MP  +R+ ++W  +++G+ Q        
Sbjct: 314 TIPVRDKISWTSMINGYFNVGQIAKACYLFNNMP--DRDAVAWTVMVSGHVQNELFAEAT 371

Query: 231 ------------------------------LKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
                                         L  G QF   + +   E DLI  NS++   
Sbjct: 372 YLFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSLISMY 431

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
            KCG++ DA ++F KM  RD++SW +MI G++                            
Sbjct: 432 AKCGEIGDAYSIFSKMISRDLISWNSMIMGFS---------------------------- 463

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
               +G + +AL++F+ M      HP+  + + +LSA +  G +++G  +   +  D F+
Sbjct: 464 ---HHGLTSEALKVFEAMLTS-GTHPNSVTFLGILSACSHAGLLNQGWELFDAM-SDVFA 518

Query: 381 LNGK--HGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMIN----GLAIHGLGELA 433
           +  +  H V ++++  + G +E A +   ++  +  +  W A++     G+   G+   A
Sbjct: 519 IQPQLEHYVCMVNLLGRAGKVEEAEEFISKLPFEPDLTIWGALLGVCGFGMINTGVARRA 578

Query: 434 FDLLMEMERLS 444
              L+E++ L+
Sbjct: 579 AKRLLELDPLN 589



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 151/334 (45%), Gaps = 40/334 (11%)

Query: 4   SANYN-QPCNSTQSTLL---LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSS 59
           S +YN Q CNS  +  +    L K ++L D   +  ++  T  I N +     +A     
Sbjct: 284 SMSYNTQSCNSMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMI-NGYFNVGQIAK---- 338

Query: 60  PCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDK 119
                   A Y+F         +D   W  ++  +       EA  +F  M   GVS   
Sbjct: 339 --------ACYLFNNM----PDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLN 386

Query: 120 FSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK 179
            + S++L A   +  +++G Q H LL K  F  DL LQN LIS+Y +CG +  A  +F K
Sbjct: 387 STFSILLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSK 446

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQF 237
           M  RD +S+NSMI G+   G    A ++F++M       N +++  +L+  +     L  
Sbjct: 447 MISRDLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSACSH-AGLLNQ 505

Query: 238 AWQIFEKMP-----ERDLISWNSMLHGCVKCGKMDDAQALFDKMP-KRDVVSWANMIDGY 291
            W++F+ M      +  L  +  M++   + GK+++A+    K+P + D+  W  ++ G 
Sbjct: 506 GWELFDAMSDVFAIQPQLEHYVCMVNLLGRAGKVEEAEEFISKLPFEPDLTIWGALL-GV 564

Query: 292 AKLGRVD--IARRLFDEMPKRD-------VVACN 316
              G ++  +ARR    + + D       VV CN
Sbjct: 565 CGFGMINTGVARRAAKRLLELDPLNAPAHVVLCN 598



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 139/303 (45%), Gaps = 42/303 (13%)

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRD----VVSWANMIDGYAKLGRVDIARRLFDEMPK 309
           +S +  C+   ++ +A+ + D+MP R     VV W +++  ++K G +D AR LF+ MP+
Sbjct: 45  DSQILECLSQQRLREARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALFEIMPE 104

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           R+VV  NAM+ GYV+ G    A   F+ M        +  S   +L  +A  G I +   
Sbjct: 105 RNVVTYNAMLSGYVQCGRLSDACRFFEEMP-----ERNVVSWTSLLCGLANAGRIGEARE 159

Query: 370 IHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
           +   + E++  S N    V LI    + G +E A +VF ++   S   WN MI G A H 
Sbjct: 160 LFNVMPERNVVSWNSML-VGLI----RSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEHS 214

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM------------- 475
             E A  L   M   ++    +T+T +++    AG V+EG   F+ M             
Sbjct: 215 RMEEARVLFDGMGDRNV----VTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIG 270

Query: 476 ---------RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
                      ++ +    Q    M++   R G +E A++L + +P+  + + W ++++ 
Sbjct: 271 GFAWNGFYKEALNSMSYNTQSCNSMINGYIRIGQLEKAQSLFDTIPVR-DKISWTSMING 329

Query: 527 CRN 529
             N
Sbjct: 330 YFN 332


>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
 gi|194696634|gb|ACF82401.1| unknown [Zea mays]
          Length = 615

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 195/602 (32%), Positives = 320/602 (53%), Gaps = 52/602 (8%)

Query: 27  LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDP-- 84
           L  V ++HA+++  G  ++ H  +KL+AS++     P     R +F    A      P  
Sbjct: 39  LRHVQELHAQLLKQGLHRDPHTASKLIASYALLRRVPAC---RCVFSAAVALPNSPFPSS 95

Query: 85  --FLWNAIIKTYSHGLDPKEALVMFCLMLDNGV-SVDKFSASLVLKACSRLGLIE-EGLQ 140
              L   +++ Y+    P  AL +F   LD  +     F+ S ++KA +  GL    G  
Sbjct: 96  TTLLTKTLLRAYALNSLPHAALAVF---LDVPLRQRGTFTYSFLIKALAAAGLTPVRGAH 152

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
            H                      V+ G  E            D+   N++ID Y K+  
Sbjct: 153 AH---------------------VVKLGSAE------------DTFVGNALIDAYSKNQG 179

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHG 259
           +  A+++FD M  R  +++SWN+ +   A ++ G +  A  +F++MPE+D +SWN+ML G
Sbjct: 180 LSDAKKVFDEMTTR--DVVSWNTAMA--AMVRQGEVDAARSMFDEMPEKDTVSWNTMLDG 235

Query: 260 CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM 319
             K G+ + A  LF +MP R+VVSW+ ++  Y K G +++AR +FD+MP +++V    M+
Sbjct: 236 YAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMV 295

Query: 320 GGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF 379
               + G   +A  +F  M  +  +  D  ++V +L+A A+ G +  G  IHR++ + + 
Sbjct: 296 SACAQKGLVEEAGRLFTEMM-DAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKL 354

Query: 380 SLNGKHGVALIDMYSKCGSIENAIKVFE-QIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
           S +     AL+DM+ KCG +  A  +F+ +I +  +  WN +I G A+HG GE A +L  
Sbjct: 355 SRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFA 414

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
           +M++    PD +T   +L+AC H GLV+EG   F  M   + ++P+++HYGCMVD+LGR 
Sbjct: 415 QMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRG 474

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           G I+ A ++I+ MP EPN+VIW +LLSACR ++N+   E     L  +  S++ +Y +LS
Sbjct: 475 GLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELSNLQPSSAGNYAVLS 534

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           N++A  G W+D  + R  MK    +K  G SWIEL    HEF V D+   +   I  M+D
Sbjct: 535 NIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIELNEAFHEFTVGDRKHPESDQISDMID 594

Query: 619 NM 620
            +
Sbjct: 595 RL 596


>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
          Length = 687

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 195/602 (32%), Positives = 320/602 (53%), Gaps = 52/602 (8%)

Query: 27  LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDP-- 84
           L  V ++HA+++  G  ++ H  +KL+AS++     P     R +F    A      P  
Sbjct: 111 LRHVQELHAQLLKQGLHRDPHTASKLIASYALLRRVPA---CRCVFSAAVALPNSPFPSS 167

Query: 85  --FLWNAIIKTYSHGLDPKEALVMFCLMLDNGV-SVDKFSASLVLKACSRLGLIE-EGLQ 140
              L   +++ Y+    P  AL +F   LD  +     F+ S ++KA +  GL    G  
Sbjct: 168 TTLLTKTLLRAYALNSLPHAALAVF---LDVPLRQRGTFTYSFLIKALAAAGLTPVRGAH 224

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
            H                      V+ G  E            D+   N++ID Y K+  
Sbjct: 225 AH---------------------VVKLGSAE------------DTFVGNALIDAYSKNQG 251

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHG 259
           +  A+++FD M  R  +++SWN+ +   A ++ G +  A  +F++MPE+D +SWN+ML G
Sbjct: 252 LSDAKKVFDEMTTR--DVVSWNTAMA--AMVRQGEVDAARSMFDEMPEKDTVSWNTMLDG 307

Query: 260 CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM 319
             K G+ + A  LF +MP R+VVSW+ ++  Y K G +++AR +FD+MP +++V    M+
Sbjct: 308 YAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMV 367

Query: 320 GGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF 379
               + G   +A  +F  M  +  +  D  ++V +L+A A+ G +  G  IHR++ + + 
Sbjct: 368 SACAQKGLVEEAGRLFTEMM-DAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKL 426

Query: 380 SLNGKHGVALIDMYSKCGSIENAIKVFE-QIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
           S +     AL+DM+ KCG +  A  +F+ +I +  +  WN +I G A+HG GE A +L  
Sbjct: 427 SRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFA 486

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
           +M++    PD +T   +L+AC H GLV+EG   F  M   + ++P+++HYGCMVD+LGR 
Sbjct: 487 QMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRG 546

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           G I+ A ++I+ MP EPN+VIW +LLSACR ++N+   E     L  +  S++ +Y +LS
Sbjct: 547 GLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELSNLQPSSAGNYAVLS 606

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           N++A  G W+D  + R  MK    +K  G SWIEL    HEF V D+   +   I  M+D
Sbjct: 607 NIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIELNEAFHEFTVGDRKHPESDQISDMID 666

Query: 619 NM 620
            +
Sbjct: 667 RL 668


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 197/616 (31%), Positives = 320/616 (51%), Gaps = 22/616 (3%)

Query: 20  LLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L  C  L D+     IH   +  G ++N  ++  LV  + S  C      A+ +F    
Sbjct: 248 ILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCV---REAQAVF---- 300

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
                ++   WN++   Y +   P++ L +F  M  NGV  D  + S +L ACS+L  ++
Sbjct: 301 DLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLK 360

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G  IHG   K     D+F+   L++LY  C  +  A+ +FD M  R+ V++NS+   YV
Sbjct: 361 SGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYV 420

Query: 197 KSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQL---KSG-LQFAWQIFEKMPERDL 250
             G  +    +F  M +   + +L++  S+L+  + L   KSG +   + +   M E D+
Sbjct: 421 NCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVE-DV 479

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP-- 308
              N++L    KC  + +AQ +FD +P R+V SW  ++  Y      +    +F +M   
Sbjct: 480 FVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRD 539

Query: 309 --KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
             K D +  + ++GG V+N    +A+EIF  MQ  +   PD+ ++  +L A +    +  
Sbjct: 540 EVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQ-TMGFKPDETTIYSILRACSLSECLRM 598

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G  IH Y+ +     +     AL+DMY+KCG +  +  VF+ +    V  WN MI    +
Sbjct: 599 GKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGM 658

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           HG G+ A  L  +M    ++PD  TFT +L+AC+H+ LV+EG+  F  M R H +EPE +
Sbjct: 659 HGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAE 718

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HY C+VDI  RAG +E A   I+ MPMEP  + W+  L+ CR Y+N+ + +  AK L  +
Sbjct: 719 HYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEI 778

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           D + S++YV L N+     +W++A ++R +MKER + K PGCSW  +   VH F   DKS
Sbjct: 779 DPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDKS 838

Query: 607 RLQVRDIYYMLDNMWT 622
            ++   IY  LD ++ 
Sbjct: 839 NMESDKIYNFLDELFA 854



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 127/556 (22%), Positives = 239/556 (42%), Gaps = 96/556 (17%)

Query: 20  LLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L  C  L D+    +IH  ++  G +++  +++  V  ++   C      A+ +F    
Sbjct: 147 ILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCV---REAQTVF---- 199

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
                +D   WN++   Y +   P++ L +F  M+ +GV  D  + S +L ACS L  ++
Sbjct: 200 DLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLK 259

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G  IHG   K     ++F+ N L++LY  C  +  A+ +FD M  R+ +++NS+   YV
Sbjct: 260 SGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYV 319

Query: 197 KSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQ---LKSGLQF-AWQIFEKMPERDL 250
             G  +    +F  M +   + + ++ +S+L   +Q   LKSG     + +   M E D+
Sbjct: 320 NCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVE-DV 378

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
               ++++    C  + +AQ +FD MP R+VV+W                          
Sbjct: 379 FVCTALVNLYANCLCVREAQTVFDLMPHRNVVTW-------------------------- 412

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
                N++   YV  G+  K L +F  M     + PD  +++ +L A + L  +  G  I
Sbjct: 413 -----NSLSSCYVNCGFPQKGLNVFREMVLN-GVKPDLVTMLSILHACSDLQDLKSGKVI 466

Query: 371 HRY-----LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
           H +     + +D F  N     AL+ +Y+KC  +  A  VF+ I    V  WN ++    
Sbjct: 467 HGFAVRHGMVEDVFVCN-----ALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYF 521

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRI------- 478
            +   E    +  +M R  ++ D+IT++ ++  C     ++E +  F  M+ +       
Sbjct: 522 TNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDET 581

Query: 479 ---------------------------HKLEPELQHYGCMVDILGRAGHIEAARNLIEDM 511
                                      H  + +L     +VD+  + G +  +RN+ + M
Sbjct: 582 TIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMM 641

Query: 512 PMEPNDVI-WRTLLSA 526
           P++  DV  W T++ A
Sbjct: 642 PIK--DVFSWNTMIFA 655



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 109/448 (24%), Positives = 194/448 (43%), Gaps = 52/448 (11%)

Query: 30  VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNA 89
           V Q H      G + +  +    + ++    C    E AR +F    A    +D   WN+
Sbjct: 59  VKQFHDDATRCGVMSDVSIGNAFIHAYGKCKCV---EGARRVFDDLVA----RDVVTWNS 111

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA 149
           +   Y +   P++ L +F  M  N V  +  + S +L  CS L  ++ G +IHG + +  
Sbjct: 112 LSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHG 171

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD 209
              D+F+ +  ++ Y +C  +  A+ +FD M  RD V++NS+   YV  G  +    +F 
Sbjct: 172 MVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFR 231

Query: 210 SM--------PIRERNLISWNSVLNGYAQLKSGLQF-AWQIFEKMPERDLISWNSMLHGC 260
            M        P+    ++S  S L     LKSG     + +   M E   +S N++++  
Sbjct: 232 EMVLDGVKPDPVTVSCILSACSDLQ---DLKSGKAIHGFALKHGMVENVFVS-NALVNLY 287

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
             C  + +AQA+FD MP R+V++W                               N++  
Sbjct: 288 ESCLCVREAQAVFDLMPHRNVITW-------------------------------NSLAS 316

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
            YV  G+  K L +F  M     + PD  ++  +L A +QL  +  G  IH +  K    
Sbjct: 317 CYVNCGFPQKGLNVFREMGLN-GVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMV 375

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
            +     AL+++Y+ C  +  A  VF+ +   +V  WN++ +     G  +   ++  EM
Sbjct: 376 EDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREM 435

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEG 468
               ++PD +T   +L+AC+    +K G
Sbjct: 436 VLNGVKPDLVTMLSILHACSDLQDLKSG 463



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 195/448 (43%), Gaps = 45/448 (10%)

Query: 96  HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLF 155
           HGL P EA+ ++      G+  DK     V KAC+      +  Q H    +    SD+ 
Sbjct: 18  HGL-PNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVS 76

Query: 156 LQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR- 214
           + N  I  Y +C  +E AR++FD +  RD V++NS+   YV  G  +    +F  M +  
Sbjct: 77  IGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNK 136

Query: 215 -ERNLISWNSVLNGYA---QLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQ 270
            + N ++ +S+L G +    LKSG +    +       D+   ++ ++   KC  + +AQ
Sbjct: 137 VKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQ 196

Query: 271 ALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMK 330
            +FD MP RDVV+W                               N++   YV  G+  K
Sbjct: 197 TVFDLMPHRDVVTW-------------------------------NSLSSCYVNCGFPQK 225

Query: 331 ALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI 390
            L +F  M  +  + PD  ++  +LSA + L  +  G AIH +  K     N     AL+
Sbjct: 226 GLNVFREMVLD-GVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALV 284

Query: 391 DMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
           ++Y  C  +  A  VF+ +   +V  WN++ +     G  +   ++  EM    ++PD +
Sbjct: 285 NLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPM 344

Query: 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIED 510
             + +L AC+    +K G        + H +  ++     +V++      +  A+ + + 
Sbjct: 345 AMSSILPACSQLKDLKSGKTIHGFAVK-HGMVEDVFVCTALVNLYANCLCVREAQTVFDL 403

Query: 511 MPMEPNDVIWRTLLSACRNYENLNVGEP 538
           MP   N V W + LS+C     +N G P
Sbjct: 404 MPHR-NVVTWNS-LSSCY----VNCGFP 425


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 160/361 (44%), Positives = 234/361 (64%), Gaps = 2/361 (0%)

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
            + G  D A+ALFD+MP   VV    M+  YAK+G +D AR LFD MP +D +  NAM+ 
Sbjct: 176 ARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMID 235

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ-F 379
           GY ++G   +AL +F  M     + PD+ ++++ LSA+AQLG  + G  +H Y++  +  
Sbjct: 236 GYTQHGRPNEALRLFRWM-LRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRV 294

Query: 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLME 439
            LN + G ALIDMY KCGS+E+A+ VF  I D  +  WNAMING A+HG    A ++  +
Sbjct: 295 QLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQ 354

Query: 440 MERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG 499
           +    + P DITF GLLNAC+H+GLV EG   F+ M   + + P+++HYGCMVD+LGRAG
Sbjct: 355 LRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAG 414

Query: 500 HIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559
            IE A +L++ M + P+ V+W +LL+ACR ++N+ +G+ +A +L+    +NS  Y+LLSN
Sbjct: 415 LIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSN 474

Query: 560 MFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDN 619
           ++A +G W +  RVRSMMK   ++K PGCS IE+   V+EF   D S  +  +IY ML+ 
Sbjct: 475 IYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEK 534

Query: 620 M 620
           M
Sbjct: 535 M 535



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 201/451 (44%), Gaps = 60/451 (13%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LL  C TL    ++HA  +  G   +  +  +L  ++++S    LT             R
Sbjct: 41  LLTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLT---------VTLLR 91

Query: 80  EKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
              DP    + + I  +S       AL +   ML  G+     + S  L AC  L L   
Sbjct: 92  LTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHGLAL--- 148

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G  +H    K+A   D ++   L+ +Y R G  + AR LFD+M     V   +M+  Y K
Sbjct: 149 GRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAK 208

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQ----FAWQIFEKMPERDLISW 253
            G ++ ARELFD MP   ++ I WN++++GY Q     +    F W +   + + D ++ 
Sbjct: 209 MGALDDARELFDGMP--SKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGV-DPDEVAI 265

Query: 254 NSMLHGCVKCGKMDDAQAL--FDKMPKR---DVVSWANMIDGYAKLGRVDIARRLFDEMP 308
              L    + G  +  + L  + K  +R   +      +ID Y K G ++ A  +F+ + 
Sbjct: 266 ILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIG 325

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            +D+V  NAM+ GY  +G S KALE+F  ++ +  L P D + + +L+A +  G +D+G 
Sbjct: 326 DKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQ-GLWPTDITFIGLLNACSHSGLVDEG- 383

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
             H++ +                      S+E    +  +IE     H+  M++ L   G
Sbjct: 384 --HQFFQ----------------------SMEEEYAIVPKIE-----HYGCMVDLLGRAG 414

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
           L E AF L+  M   +I PD + +  LL AC
Sbjct: 415 LIEEAFHLVQSM---TIAPDTVMWVSLLAAC 442


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 160/361 (44%), Positives = 234/361 (64%), Gaps = 2/361 (0%)

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
            + G  D A+ALFD+MP   VV    M+  YAK+G +D AR LFD MP +D +  NAM+ 
Sbjct: 175 ARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMID 234

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ-F 379
           GY ++G   +AL +F  M     + PD+ ++++ LSA+AQLG  + G  +H Y++  +  
Sbjct: 235 GYTQHGRPNEALRLFRWM-LRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRV 293

Query: 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLME 439
            LN + G ALIDMY KCGS+E+A+ VF  I D  +  WNAMING A+HG    A ++  +
Sbjct: 294 QLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQ 353

Query: 440 MERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG 499
           +    + P DITF GLLNAC+H+GLV EG   F+ M   + + P+++HYGCMVD+LGRAG
Sbjct: 354 LRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAG 413

Query: 500 HIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559
            IE A +L++ M + P+ V+W +LL+ACR ++N+ +G+ +A +L+    +NS  Y+LLSN
Sbjct: 414 LIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSN 473

Query: 560 MFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDN 619
           ++A +G W +  RVRSMMK   ++K PGCS IE+   V+EF   D S  +  +IY ML+ 
Sbjct: 474 IYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEK 533

Query: 620 M 620
           M
Sbjct: 534 M 534



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 201/451 (44%), Gaps = 60/451 (13%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LL  C TL    ++HA  +  G   +  +  +L  ++++S    LT             R
Sbjct: 40  LLTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLT---------VTLLR 90

Query: 80  EKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
              DP    + + I  +S       AL +   ML  G+     + S  L AC  L L   
Sbjct: 91  LTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHGLAL--- 147

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G  +H    K+A   D ++   L+ +Y R G  + AR LFD+M     V   +M+  Y K
Sbjct: 148 GRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAK 207

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQ----FAWQIFEKMPERDLISW 253
            G ++ ARELFD MP   ++ I WN++++GY Q     +    F W +   + + D ++ 
Sbjct: 208 MGALDDARELFDGMP--SKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGV-DPDEVAI 264

Query: 254 NSMLHGCVKCGKMDDAQAL--FDKMPKR---DVVSWANMIDGYAKLGRVDIARRLFDEMP 308
              L    + G  +  + L  + K  +R   +      +ID Y K G ++ A  +F+ + 
Sbjct: 265 ILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIG 324

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            +D+V  NAM+ GY  +G S KALE+F  ++ +  L P D + + +L+A +  G +D+G 
Sbjct: 325 DKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQ-GLWPTDITFIGLLNACSHSGLVDEG- 382

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
             H++ +                      S+E    +  +IE     H+  M++ L   G
Sbjct: 383 --HQFFQ----------------------SMEEEYAIVPKIE-----HYGCMVDLLGRAG 413

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
           L E AF L+  M   +I PD + +  LL AC
Sbjct: 414 LIEEAFHLVQSM---TIAPDTVMWVSLLAAC 441


>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 176/491 (35%), Positives = 284/491 (57%), Gaps = 15/491 (3%)

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H L+ K A     FL   +I +  R   +++A  LF ++   ++  YN+MI     +   
Sbjct: 8   HALVIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACTHNSMY 67

Query: 202 ESARELFDSMPIRERNL-----------ISWNSVLNGYAQL---KSGLQFAWQIFEKMPE 247
               + +  M    RN             ++  V+   A+L     G Q   Q F+   +
Sbjct: 68  SLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKK 127

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
             LI+ N+++    KC  + DA  LFD+M +R  +SW  +I G+ +LG++  AR LFDEM
Sbjct: 128 SHLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALFDEM 187

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
           P R +V+  A++ GY R G  + AL++F  MQ    + PD+AS++ VL A A+LG ++ G
Sbjct: 188 PNRTIVSWTAIISGYTRIGSYIDALDVFREMQIA-GIEPDEASIISVLPACAKLGALETG 246

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
             IH +  ++          ALI+MY+KCG I+ A ++F+Q+    V  W+ MI GLA H
Sbjct: 247 KWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANH 306

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           G    A  +   M++ +I+P+ ITF GLL+ACAHAG  +EGL+ F+ M++   +EPE++H
Sbjct: 307 GKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEH 366

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
           YG +VD+LGRAG +  A +++E MPM+P+  IW +LLS+CR + N+ V     +HL  ++
Sbjct: 367 YGSLVDLLGRAGRLSQALDIVEKMPMKPDSKIWGSLLSSCRTHCNIEVAVIAMEHLEELE 426

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
             ++ +YVLLSN++A LG W+D  R+R +++ + +KK PGCS IE+  V  EF   D S+
Sbjct: 427 PDDTGNYVLLSNIYADLGKWDDVSRMRKLVRSKRMKKTPGCSLIEVNNVAQEFVSGDDSK 486

Query: 608 LQVRDIYYMLD 618
              ++I+++L+
Sbjct: 487 PYSKEIFWLLE 497



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 126/447 (28%), Positives = 225/447 (50%), Gaps = 42/447 (9%)

Query: 27  LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDP-- 84
           + ++ + HA +I     ++  L TK++     +       F          F+E  DP  
Sbjct: 1   MAELKKNHALVIKYALSQSNFLVTKMIDVCDRNEDMDYASFL---------FKEVIDPNA 51

Query: 85  FLWNAIIKTYSHGLDPKEALVMFCLML---------DNGVSVDKFSASLVLKACSRLGLI 135
           +L+NA+I+  +H       +  +  ML         ++ +  D+F+   V+KAC+RLGL 
Sbjct: 52  YLYNAMIRACTHNSMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLH 111

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
             G Q+H    K    S L  +N LI +Y +C  L  A  LFD+M  R ++S+N +I G+
Sbjct: 112 NLGKQVHAQFFKFGKKSHLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGH 171

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLI 251
           V+ G +  AR LFD MP   R ++SW ++++GY ++ S +  A  +F +M     E D  
Sbjct: 172 VRLGQMRRARALFDEMP--NRTIVSWTAIISGYTRIGSYID-ALDVFREMQIAGIEPDEA 228

Query: 252 SWNSMLHGCVKCGKMDDAQALF-----DKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
           S  S+L  C K G ++  + +      + + +R  +  A +I+ Y K G +D A +LFD+
Sbjct: 229 SIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNA-LIEMYTKCGCIDQACQLFDQ 287

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           M  RDV++ + M+GG   +G   +A+ IF+ M+ +  + P+  + V +LSA A  G  ++
Sbjct: 288 MRGRDVISWSTMIGGLANHGKVREAIAIFERMK-QTNIKPNGITFVGLLSACAHAGFWEE 346

Query: 367 GVAIHRYLEKD-QFSLNGKHGVALIDMYSKCGSIENAIKVFEQI---EDGSVDHWNAMIN 422
           G+     ++KD       +H  +L+D+  + G +  A+ + E++    D  +  W ++++
Sbjct: 347 GLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKI--WGSLLS 404

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDD 449
               H   E+A   +  +E L  EPDD
Sbjct: 405 SCRTHCNIEVAVIAMEHLEEL--EPDD 429


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 189/541 (34%), Positives = 294/541 (54%), Gaps = 39/541 (7%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           WN  ++  +      +AL ++  ML +G   + F+    LK+C+ L L   G Q HG + 
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK--MGIRDSVSYNSMIDGYVKSGNIESA 204
           KV    + F+Q  LIS+Y +   ++ AR++F++     + +V YN+++ GYV +     A
Sbjct: 77  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136

Query: 205 RELFDSM-----PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
             LF  M     P+    L+           L+ G                    S LH 
Sbjct: 137 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELG--------------------SSLH- 175

Query: 260 CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM 319
              C  +      FD     DV      I  Y K G V+ A++LFDEMP + +++ NAM+
Sbjct: 176 ---CSTLKYG---FDS----DVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMV 225

Query: 320 GGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF 379
            GY +NG +   LE++ NM     +HPD  +LV VLS+ A LG    G  +   ++   F
Sbjct: 226 SGYAQNGLATNVLELYRNMDMN-GVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGF 284

Query: 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLME 439
           + N     ALI+MY++CG++  A  VF+ + + ++  W A+I G  +HG GE+A  L  E
Sbjct: 285 TSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKE 344

Query: 440 MERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG 499
           M R  IEPD   F  +L+AC+HAGL  +GL  F++M+R ++LEP  +HY CMVD+LGRAG
Sbjct: 345 MIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAG 404

Query: 500 HIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559
            ++ A+ LIE MP++P+  +W  LL AC+ ++N+ + E   + +I ++  N   YVLLSN
Sbjct: 405 RLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSN 464

Query: 560 MFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDN 619
           +++         R+R MMKE+ LKK PGCS++EL+G VH F V D++ LQ  +IY +L+ 
Sbjct: 465 IYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEE 524

Query: 620 M 620
           +
Sbjct: 525 L 525



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 133/507 (26%), Positives = 245/507 (48%), Gaps = 67/507 (13%)

Query: 31  NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAI 90
           +Q H ++   G +    + T L++ +       L + AR +F     F  +K    +NA+
Sbjct: 69  SQFHGQITKVGCVFEPFVQTGLISMYCKGS---LVDNARKVF--EENFHSRKLTVCYNAL 123

Query: 91  IKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAF 150
           +  Y       EA+++F  M + GV V+  +   ++ AC     +E G  +H    K  F
Sbjct: 124 VSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGF 183

Query: 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDS 210
            SD+ + NC I++Y++CG + +A++LFD+M ++  +S+N+M+ GY ++G   +  EL+ +
Sbjct: 184 DSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRN 243

Query: 211 MPIR--ERNLISWNSVLNGYAQLKS---GLQFAWQIFEKMPERDLISWNSMLHGCVKCGK 265
           M +     + ++   VL+  A L +   G +  ++I       +    N++++   +CG 
Sbjct: 244 MDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGN 303

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
           +  AQA+FD MP+R +VSW  +I GY   G  +IA +LF EM               +R+
Sbjct: 304 LTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEM---------------IRS 348

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD-QFSLNGK 384
           G                 + PD  + V VLSA +  G  D+G+   + ++++ Q     +
Sbjct: 349 G-----------------IEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPE 391

Query: 385 HGVALIDMYSKCGSIENAIKVFEQI---EDGSVDHWNAMINGLAIHG---LGELAFDLLM 438
           H   ++D+  + G ++ A  + E +    DG+V  W A++    IH    L ELAF+ ++
Sbjct: 392 HYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAV--WGALLGACKIHKNVELAELAFERVI 449

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC-MVDILGR 497
           E+     EP++I +  LL+         +G+L   +M +  KL+ +    GC  V++ GR
Sbjct: 450 EL-----EPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDP---GCSYVELKGR 501

Query: 498 A-GHIEAARNLIEDMPMEPNDVIWRTL 523
               I   RN ++      +D I+R L
Sbjct: 502 VHPFIVGDRNHLQ------SDEIYRVL 522


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 182/507 (35%), Positives = 285/507 (56%), Gaps = 21/507 (4%)

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVR----CGYLEFARQLFDKMG 181
           L+ CS L  ++    IH  + +     D+F  + LI+  V        +++A ++F ++ 
Sbjct: 24  LETCSDLTHLK---IIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQ 80

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ-------LKSG 234
             +   +N+MI G+  S N + A   +  +  + + L+  N       +       +  G
Sbjct: 81  NPNLFIFNAMIRGHSGSKNPDQAFHFY--VQSQRQGLLPDNLTFPFLVKSCTKLHCISMG 138

Query: 235 LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKL 294
            Q    I +   E+D+   NS++H     G  + A  +F +M   DVVSW +MI G+ K 
Sbjct: 139 SQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKC 198

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
           G V+ AR+LFD+MP++++V  + M+ GY +N +  KA+E+F  +Q +  +  ++  +V V
Sbjct: 199 GDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQ-GVRANETVMVSV 257

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
           +S+ A LG ++ G   H Y+ K+  +LN   G AL+DMY++CGSI+ A+ VFE + +   
Sbjct: 258 ISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDT 317

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
             W A+I GLA+HG  E +      M    + P DITFT +L+AC+H GLV+ G   FE 
Sbjct: 318 LSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFES 377

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534
           M+R H++EP L+HYGCMVD+LGRAG +E A   +  MP++PN  +W  LL ACR ++N  
Sbjct: 378 MKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAE 437

Query: 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           +GE V K LI +   +S  YVLLSN++A    W     +R MMK + LKK PG S IEL+
Sbjct: 438 IGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELD 497

Query: 595 GVVHEFFVRDKSRLQVRDIYYMLDNMW 621
           G VH+F + D S  ++  I    + MW
Sbjct: 498 GRVHKFTIGDSSHPEMDKI----ERMW 520



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 122/427 (28%), Positives = 223/427 (52%), Gaps = 19/427 (4%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVA-SFSSSPCTPLTEFARYIFFKYH 76
           L  L  C  L  +  IHA MI T  I +    ++L+A     S  T L ++A  IF +  
Sbjct: 21  LFSLETCSDLTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQI- 79

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
              +  + F++NA+I+ +S   +P +A   +      G+  D  +   ++K+C++L  I 
Sbjct: 80  ---QNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCIS 136

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G Q HG + K  F  D+++QN L+ +Y   G  E A  +F +M   D VS+ SMI G+ 
Sbjct: 137 MGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFN 196

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN-- 254
           K G++ESAR+LFD MP  E+NL++W+++++GYAQ  +    A ++F+ +  + + +    
Sbjct: 197 KCGDVESARKLFDQMP--EKNLVTWSTMISGYAQ-NNHFDKAVELFKVLQSQGVRANETV 253

Query: 255 --SMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMP 308
             S++  C   G ++  +   D + K     +++    ++D YA+ G +D A  +F+++P
Sbjct: 254 MVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLP 313

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
           +RD ++  A++ G   +GYS ++L+ F  M  E  L P D +   VLSA +  G +++G 
Sbjct: 314 ERDTLSWTALIAGLAMHGYSERSLKYFATM-VEAGLTPRDITFTAVLSACSHGGLVERGF 372

Query: 369 AIHRYLEKD-QFSLNGKHGVALIDMYSKCGSIENAIK-VFEQIEDGSVDHWNAMINGLAI 426
            I   +++D +     +H   ++D+  + G +E A + V +     +   W A++    I
Sbjct: 373 QIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRI 432

Query: 427 HGLGELA 433
           H   E+ 
Sbjct: 433 HKNAEIG 439


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 205/595 (34%), Positives = 307/595 (51%), Gaps = 42/595 (7%)

Query: 31  NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAI 90
            QIHA ++  G  K+  L   L+ S+    C  +   A +  F        K+   W  +
Sbjct: 269 KQIHAHILRYGHEKDASLMNVLIDSYVK--CGRVR--AAHKLFDGMP---NKNIISWTTL 321

Query: 91  IKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAF 150
           +  Y      KEA+ +F  M   G+  D F+ S +L +C+ L  +E G Q+H    K   
Sbjct: 322 LSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANL 381

Query: 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN---IESAREL 207
           G+D ++ N LI +Y +C  L  AR++FD     D V +N+MI+GY + G    +  A  +
Sbjct: 382 GNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNI 441

Query: 208 FDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGK 265
           F  M  R    +L+++ S+L   A L S                 +  +  +HG      
Sbjct: 442 FHDMRFRLIRPSLLTFVSLLRASASLTS-----------------LGLSKQIHGL----- 479

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
                 +F      D+ + + +I  Y+    +  +R +FDEM  +D+V  N+M  GYV+ 
Sbjct: 480 ------MFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQ 533

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
             + +AL +F  +Q      PD+ + V +++A   L  +  G   H  L K     N   
Sbjct: 534 SENEEALNLFLELQLSRD-RPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYI 592

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
             AL+DMY+KCGS E+A K F+      V  WN++I+  A HG G  A  +L +M    I
Sbjct: 593 TNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKMMCEGI 652

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR 505
           EP+ ITF G+L+AC+HAGLV++GL  FELM R   +EPE +HY CMV +LGRAG +  AR
Sbjct: 653 EPNYITFVGVLSACSHAGLVEDGLKQFELMLRF-GIEPETEHYVCMVSLLGRAGRLNEAR 711

Query: 506 NLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565
            LIE MP +P  ++WR+LLS C    N+ + E  A+  I  D  +S S+ LLSN++A  G
Sbjct: 712 ELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEYAAEMAILSDPKDSGSFTLLSNIYASKG 771

Query: 566 MWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           MW DA++VR  MK   + K PG SWIE+   VH F  +DKS  +   IY +LD++
Sbjct: 772 MWTDAKKVRERMKFEGVVKEPGRSWIEINKEVHIFLSKDKSHCKANQIYEVLDDL 826



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 140/537 (26%), Positives = 229/537 (42%), Gaps = 90/537 (16%)

Query: 31  NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAI 90
           N +H ++I +G   +T+L+  L+  +S +       +AR +F K      +++   W+ +
Sbjct: 64  NVVHGQIIVSGLELDTYLSNILMNLYSRAGGMV---YARKVFEKM----PERNLVTWSTM 116

Query: 91  IKTYSHGLDPKEALVMFC-LMLDNGVSVDKFSASLVLKACSRLGLIEEG----LQIHGLL 145
           +   +H    +E+LV+F         S +++  S  ++ACS  GL   G     Q+   L
Sbjct: 117 VSACNHHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQACS--GLDGSGRWMVFQLQSFL 174

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
            K  F  D+++   LI  Y++ G +++AR +FD +  + +V++ +MI G VK G    + 
Sbjct: 175 VKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSL 234

Query: 206 ELFDSMPIRERNLISWNSVLNGYAQ------------LKSGLQFAWQIFEKMPERDLISW 253
           +LF         L+  N V +GY              L+ G Q    I     E+D    
Sbjct: 235 QLF-------YQLMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLM 287

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
           N ++   VKCG++  A  LFD MP ++++SW  ++ GY +      A  LF  MPK    
Sbjct: 288 NVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPK---- 343

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
                                         L PD  +   +L++ A L  ++ G  +H Y
Sbjct: 344 ----------------------------FGLKPDMFACSSILTSCASLHALEFGTQVHAY 375

Query: 374 LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG-EL 432
             K     +     +LIDMY+KC  +  A KVF+      V  +NAMI G +  G   EL
Sbjct: 376 TIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWEL 435

Query: 433 --AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
             A ++  +M    I P  +TF  LL A A        L    L ++IH L   +  +G 
Sbjct: 436 HDALNIFHDMRFRLIRPSLLTFVSLLRASA-------SLTSLGLSKQIHGL---MFKFGL 485

Query: 491 MVDILGRAGHIEAARN--------LIEDMPMEPNDVIWRTLLSA----CRNYENLNV 535
            +DI   +  I    N        L+ D     + VIW ++ S       N E LN+
Sbjct: 486 NLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNL 542


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 206/669 (30%), Positives = 338/669 (50%), Gaps = 82/669 (12%)

Query: 27  LNDVNQIHARMITTGFI---KNTHLTTKLV-------------ASFSSSPC--TPLTEFA 68
           L  +  +HAR++T+  +    + HLT +L+               F + PC  +  +  A
Sbjct: 37  LRALRCLHARLLTSALLHAPPHPHLTLRLIHLYTLSRDLPAAATLFCADPCPVSATSLVA 96

Query: 69  RY---------IFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG-VSVD 118
            Y         + F       ++D  L NA+I  Y+       A+ +F  +L +G +  D
Sbjct: 97  AYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPD 156

Query: 119 KFSASLVLKACSRLGLI--EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF---A 173
            +S + +L A   L  I      Q+H  + K   G  L + N L++LY++C   E    A
Sbjct: 157 DYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDA 216

Query: 174 RQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKS 233
           R++ D+M  +D +++ +M+ GYV+ G++ +AR +F+   +  +  + WN++++GY  + S
Sbjct: 217 RKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEE--VDGKFDVVWNAMISGY--VHS 272

Query: 234 GLQF-AWQIFEKMP-ER---DLISWNSMLHGCV--------------------------- 261
           G+   A+++F +M  ER   D  ++ S+L  C                            
Sbjct: 273 GMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAA 332

Query: 262 ------------KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
                       KCG +  A+ +FD M  +DVVSW  ++ GY +   +D A  +F+EMP 
Sbjct: 333 LPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPY 392

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           ++ ++   M+ GYV  G++  AL++F+ M+ E  + P D +    ++A  +LG +  G  
Sbjct: 393 KNELSWMVMVSGYVHGGFAEDALKLFNKMRSE-NVKPCDYTYAGAIAACGELGALKHGKQ 451

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
           +H ++ +  F  +   G ALI MY++CG+++ A  +F  + +     WNAMI+ L  HG 
Sbjct: 452 LHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGH 511

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
           G  A +L   M    I PD I+F  +L AC H+GLV EG   FE M+R   + P   HY 
Sbjct: 512 GREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYT 571

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549
            ++D+LGRAG I  AR+LI+ MP EP   IW  +LS CR   ++ +G   A  L  M   
Sbjct: 572 RLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQ 631

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQ 609
           +  +Y+LLSN ++  G W DA RVR +M++R +KK PGCSWIE    VH F V D    +
Sbjct: 632 HDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPE 691

Query: 610 VRDIYYMLD 618
             ++Y  L+
Sbjct: 692 AHEVYKFLE 700


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 189/541 (34%), Positives = 294/541 (54%), Gaps = 39/541 (7%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           WN  ++  +      +AL ++  ML +G   + F+    LK+C+ L L   G Q HG + 
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK--MGIRDSVSYNSMIDGYVKSGNIESA 204
           KV    + F+Q  LIS+Y +   ++ AR++F++     + +V YN+++ GYV +     A
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127

Query: 205 RELFDSM-----PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
             LF  M     P+    L+           L+ G                    S LH 
Sbjct: 128 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELG--------------------SSLH- 166

Query: 260 CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM 319
              C  +      FD     DV      I  Y K G V+ A++LFDEMP + +++ NAM+
Sbjct: 167 ---CSTLKYG---FDS----DVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMV 216

Query: 320 GGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF 379
            GY +NG +   LE++ NM     +HPD  +LV VLS+ A LG    G  +   ++   F
Sbjct: 217 SGYAQNGLATNVLELYRNMDMN-GVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGF 275

Query: 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLME 439
           + N     ALI+MY++CG++  A  VF+ + + ++  W A+I G  +HG GE+A  L  E
Sbjct: 276 TSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKE 335

Query: 440 MERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG 499
           M R  IEPD   F  +L+AC+HAGL  +GL  F++M+R ++LEP  +HY CMVD+LGRAG
Sbjct: 336 MIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAG 395

Query: 500 HIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559
            ++ A+ LIE MP++P+  +W  LL AC+ ++N+ + E   + +I ++  N   YVLLSN
Sbjct: 396 RLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSN 455

Query: 560 MFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDN 619
           +++         R+R MMKE+ LKK PGCS++EL+G VH F V D++ LQ  +IY +L+ 
Sbjct: 456 IYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEE 515

Query: 620 M 620
           +
Sbjct: 516 L 516



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 136/509 (26%), Positives = 244/509 (47%), Gaps = 71/509 (13%)

Query: 31  NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAI 90
           +Q H ++   G +    + T L++ +       L + AR +F     F  +K    +NA+
Sbjct: 60  SQFHGQITKVGCVFEPFVQTGLISMYCKGS---LVDNARKVF--EENFHSRKLTVCYNAL 114

Query: 91  IKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAF 150
           +  Y       +A+++F  M + GV V+  +   ++ AC     +E G  +H    K  F
Sbjct: 115 VSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGF 174

Query: 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDS 210
            SD+ + NC I++Y++CG + +A++LFD+M ++  +S+N+M+ GY ++G   +  EL+ +
Sbjct: 175 DSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRN 234

Query: 211 MPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFE-KMPERDLIS----WNSMLHGCVKC 263
           M +     + ++   VL+  A L  G Q      E KM      S     N++++   +C
Sbjct: 235 MDMNGVHPDPVTLVGVLSSCANL--GAQSVGHEVEFKMQASGFTSNPFLNNALINMYARC 292

Query: 264 GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV 323
           G +  AQA+FD MP+R +VSW  +I GY   G  +IA +LF EM               +
Sbjct: 293 GNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEM---------------I 337

Query: 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD-QFSLN 382
           R+G                 + PD  + V VLSA +  G  D+G+   + ++++ Q    
Sbjct: 338 RSG-----------------IEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPG 380

Query: 383 GKHGVALIDMYSKCGSIENAIKVFEQI---EDGSVDHWNAMINGLAIHG---LGELAFDL 436
            +H   ++D+  + G ++ A  + E +    DG+V  W A++    IH    L ELAF+ 
Sbjct: 381 PEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAV--WGALLGACKIHKNVELAELAFER 438

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC-MVDIL 495
           ++E+     EP++I +  LL+         +G+L   +M +  KL+ +    GC  V++ 
Sbjct: 439 VIEL-----EPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDP---GCSYVELK 490

Query: 496 GRA-GHIEAARNLIEDMPMEPNDVIWRTL 523
           GR    I   RN ++      +D I+R L
Sbjct: 491 GRVHPFIVGDRNHLQ------SDEIYRVL 513


>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 471

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 168/421 (39%), Positives = 262/421 (62%), Gaps = 8/421 (1%)

Query: 203 SARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVK 262
           SA ++F  M   E+N++ W S++NGY  L   L  A + F+  PERD++ WN+M+ G ++
Sbjct: 43  SANKVFCEMV--EKNVVIWTSMINGYL-LNKDLVSARRYFDLSPERDIVLWNTMVAGYIE 99

Query: 263 CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGY 322
            G M +A++LFD+MP RDV+SW  +++GYA +G ++   R+FDEM +R+V + N ++ GY
Sbjct: 100 MGNMMEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGY 159

Query: 323 VRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK---DQF 379
            +NG   + L  F  M  E  + P+DA+L +VLSA A+LG  D G  +H+Y E    ++ 
Sbjct: 160 AQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKV 219

Query: 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLME 439
            +N K+  ALIDMY KCG+IE A++VF+ I+   +  WN MINGLA HG G  A DL  E
Sbjct: 220 DVNVKN--ALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHE 277

Query: 440 MERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG 499
           M+   I PD +TF G+L AC H GLV++GL  F  M     + P+++H GC+VD+L RAG
Sbjct: 278 MKNCGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLLSRAG 337

Query: 500 HIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559
            +  A   I  MP++ + VIW TLL A + Y+ ++ GE   K LI ++  N +++V+LSN
Sbjct: 338 FLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDTGELALKELIKLEPRNPANFVMLSN 397

Query: 560 MFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDN 619
           ++   G ++DA R++  M++   KK  G SWIE +  + +F+   +   +  ++  +L  
Sbjct: 398 IYGDAGRFDDAARLKVAMRDTGFKKEAGISWIETDDGLVKFYSSGEKHPRTEELQRILGE 457

Query: 620 M 620
           +
Sbjct: 458 L 458



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 162/336 (48%), Gaps = 52/336 (15%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           ++ +   +I+ Y+    L  AR+ FD    RD V +N+M+ GY++ GN+  AR LFD MP
Sbjct: 55  NVVIWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMVAGYIEMGNMMEARSLFDQMP 114

Query: 213 IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
            R+  ++SWN+VL GYA +   ++   ++F++M ER++ SWN ++ G  + G++ +    
Sbjct: 115 CRD--VMSWNTVLEGYANI-GDMEACERVFDEMLERNVFSWNGLIKGYAQNGRVSEVLGS 171

Query: 273 FDKM-----------------------------------------PKRDVVSWANMIDGY 291
           F +M                                          K DV     +ID Y
Sbjct: 172 FKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKVDVNVKNALIDMY 231

Query: 292 AKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASL 351
            K G ++IA  +F  + +RD+++ N M+ G   +G+  +AL++F  M+    + PD  + 
Sbjct: 232 GKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMK-NCGISPDKVTF 290

Query: 352 VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK--HGVALIDMYSKCGSIENAIKVFEQI 409
           V VL A   +G ++ G+A    +  D FS+  +  H   ++D+ S+ G +  A++   ++
Sbjct: 291 VGVLCACKHMGLVEDGLAYFNSMFTD-FSITPQIEHCGCVVDLLSRAGFLTQAVEFINKM 349

Query: 410 E-DGSVDHWNAMINGLAIH---GLGELAFDLLMEME 441
                   W  ++    ++     GELA   L+++E
Sbjct: 350 PVKADAVIWATLLGASKVYKKVDTGELALKELIKLE 385



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 124/270 (45%), Gaps = 58/270 (21%)

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
           M  A  +F +M +++VV W +MI+GY     +  ARR FD  P+RD+V  N M+ GY+  
Sbjct: 41  MVSANKVFCEMVEKNVVIWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMVAGYIEM 100

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
           G  M+A  +FD M C                                   +D  S N   
Sbjct: 101 GNMMEARSLFDQMPC-----------------------------------RDVMSWN--- 122

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG-LGELAFDLLMEMERLS 444
              +++ Y+  G +E   +VF+++ + +V  WN +I G A +G + E+       ++  S
Sbjct: 123 --TVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGS 180

Query: 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH-------YGCMVDILGR 497
           + P+D T T +L+ACA  G        F+  +R+HK    L +          ++D+ G+
Sbjct: 181 VFPNDATLTLVLSACAKLG-------AFDFGKRVHKYGENLGYNKVDVNVKNALIDMYGK 233

Query: 498 AGHIEAARNLIEDMPMEPNDVI-WRTLLSA 526
            G IE A  + +   ++  D+I W T+++ 
Sbjct: 234 CGAIEIAMEVFKG--IKRRDLISWNTMING 261



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 115/243 (47%), Gaps = 19/243 (7%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG-VSVDKFSASLVLKACSRLGLIEEGL 139
           +++ F WN +IK Y+      E L  F  M+D G V  +  + +LVL AC++LG  + G 
Sbjct: 146 ERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGK 205

Query: 140 QIHGLLRKVAFGS-DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
           ++H     + +   D+ ++N LI +Y +CG +E A ++F  +  RD +S+N+MI+G    
Sbjct: 206 RVHKYGENLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAH 265

Query: 199 GNIESARELFDSMPI--RERNLISWNSVLNGYAQL---KSGLQFAWQIFEKMPERDLISW 253
           G+   A +LF  M       + +++  VL     +   + GL +   +F      D    
Sbjct: 266 GHGTEALDLFHEMKNCGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMF-----TDFSIT 320

Query: 254 NSMLH-GCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRLFDE 306
             + H GCV     + G +  A    +KMP K D V WA ++       +VD       E
Sbjct: 321 PQIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDTGELALKE 380

Query: 307 MPK 309
           + K
Sbjct: 381 LIK 383



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 86/190 (45%), Gaps = 7/190 (3%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           +++D   WN +I   +      EAL +F  M + G+S DK +   VL AC  +GL+E+GL
Sbjct: 248 KRRDLISWNTMINGLAAHGHGTEALDLFHEMKNCGISPDKVTFVGVLCACKHMGLVEDGL 307

Query: 140 Q-IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMIDG--- 194
              + +    +    +    C++ L  R G+L  A +  +KM ++ D+V + +++     
Sbjct: 308 AYFNSMFTDFSITPQIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKV 367

Query: 195 YVKSGNIESA-RELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL-IS 252
           Y K    E A +EL    P    N +  +++     +     +    + +   +++  IS
Sbjct: 368 YKKVDTGELALKELIKLEPRNPANFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGIS 427

Query: 253 WNSMLHGCVK 262
           W     G VK
Sbjct: 428 WIETDDGLVK 437


>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  321 bits (822), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 186/555 (33%), Positives = 305/555 (54%), Gaps = 48/555 (8%)

Query: 80  EKKDPFL--WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
           E   P L  W+A+I  ++     KEAL + C M   G   +  + + VL AC+RL  +  
Sbjct: 5   ENSKPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNL 64

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G +IHG + +  F S+ F+ N L+ +Y RC                              
Sbjct: 65  GKEIHGYVTRHGFMSNPFVVNGLVDVYRRCA----------------------------- 95

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP--ERDLISWNS 255
             ++ SA ++F    ++  N++S+N+++ GY +    ++ A ++F++M    +D ISWNS
Sbjct: 96  --DMGSALKIFSGFSVK--NVVSYNTMIVGYCE-NGNVEKAKELFDQMELVGKDTISWNS 150

Query: 256 MLHG----CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP--- 308
           M+ G     +KC  +  AQ  FD + +RD  +W  +I GYA   +++  + L  +M    
Sbjct: 151 MISGYADNLLKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDG 210

Query: 309 -KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
            + +V   N ++ G+V NG++  AL +F  MQ    L PD  ++ I+L A A+L  I +G
Sbjct: 211 FEPNVYTWNGIISGHVENGHNELALRLFTEMQTS-SLRPDIYTVGIILPACARLATIARG 269

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
             +H +  +  + L+   G AL+DMY+KCGSI++A++V+ +I + ++   NAM+   A+H
Sbjct: 270 KQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMH 329

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           G G+    L   M      PD +TF  +L++C HAG V+ G   F+LM   + + P L+H
Sbjct: 330 GHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMT-YYNVTPSLKH 388

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
           Y C+VD+L RAG ++ A  L++ +P +P+ V+W  LL  C  + N+ +GE  A+ LI ++
Sbjct: 389 YTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIAAESLIELE 448

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
            +N+ +YVLL+N++A  G W+D  R R M+K+R + K PGCSWIE    +H F   DKS 
Sbjct: 449 PNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKSPGCSWIEDREDIHVFLSCDKSH 508

Query: 608 LQVRDIYYMLDNMWT 622
            +  DIY  LDN+ T
Sbjct: 509 EKTEDIYTTLDNLNT 523



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 108/482 (22%), Positives = 211/482 (43%), Gaps = 76/482 (15%)

Query: 4   SANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTP 63
           +A +     +  S L    + + LN   +IH  +   GF+ N                  
Sbjct: 39  AAGFEPNARTLASVLPACARLQNLNLGKEIHGYVTRHGFMSN------------------ 80

Query: 64  LTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSA- 122
                               PF+ N ++  Y    D   AL +F     +G SV    + 
Sbjct: 81  --------------------PFVVNGLVDVYRRCADMGSALKIF-----SGFSVKNVVSY 115

Query: 123 -SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLY----VRCGYLEFARQLF 177
            ++++  C   G +E+  ++   +  V  G D    N +IS Y    ++C  L+ A+  F
Sbjct: 116 NTMIVGYCEN-GNVEKAKELFDQMELV--GKDTISWNSMISGYADNLLKCEDLKAAQLAF 172

Query: 178 DKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGL 235
           D +  RD+ ++N +I GY     +E+ + L   M     E N+ +WN +++G+ +     
Sbjct: 173 DGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVE-NGHN 231

Query: 236 QFAWQIFEKMPER----DLISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANM 287
           + A ++F +M       D+ +   +L  C +   +   + +     ++    DV   A +
Sbjct: 232 ELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAAL 291

Query: 288 IDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD 347
           +D YAK G +  A ++++ +   ++V+ NAM+  Y  +G+  + + +F NM    +  PD
Sbjct: 292 VDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGF-RPD 350

Query: 348 DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFE 407
             + + VLS+    G ++ G      +     + + KH   ++D+ S+ G ++ A ++ +
Sbjct: 351 HVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVK 410

Query: 408 QI--EDGSVDHWNAMINGLAIHG---LGELAFDLLMEMERLSIEPDDI-TFTGLLNACAH 461
           +I  +  SV  W A++ G  I G   LGE+A + L+E+     EP++   +  L N  A+
Sbjct: 411 KIPRKPDSV-MWGALLGGCVIWGNVELGEIAAESLIEL-----EPNNTGNYVLLANLYAY 464

Query: 462 AG 463
           AG
Sbjct: 465 AG 466


>gi|449440359|ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Cucumis sativus]
          Length = 595

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 189/585 (32%), Positives = 317/585 (54%), Gaps = 30/585 (5%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE--KKDPFLWNA 89
           Q+HAR++ +  + +  L +KL++ +S S           I   Y+ F +  +K+ F WNA
Sbjct: 24  QLHARLVLSSVVPDNFLGSKLISFYSKSGS---------IRDAYNVFGKIPRKNIFSWNA 74

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNG---VSVDKFSASLVLKACSRL----GLIEEGLQIH 142
           ++ +Y+      + L +F  ++++    V  D+F+ +  LKA + L    GL +E   +H
Sbjct: 75  LLISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCALKALASLFSNSGLAKE---VH 131

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
             + +     D+F+ N LI+ Y RC  L  AR +FD+M  RD VS+N+M+ GY + G+ E
Sbjct: 132 SFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWNAMLAGYSQGGSYE 191

Query: 203 SARELF----DSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNS 255
             +ELF     S+ ++  N ++  SVL   AQ   L  G++    + E   + D+  WN+
Sbjct: 192 KCKELFRVMLSSLEVKP-NALTAVSVLQACAQSNDLIFGIEVHRFVNESQIKMDVSLWNA 250

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           ++    KCG +D A+ LF++M ++D +++ +MI GY   G V+ A  LF E  +  +   
Sbjct: 251 VIGLYAKCGSLDYARELFEEMLEKDAITYCSMISGYMVHGFVNQAMDLFREQERPRLPTW 310

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           NA++ G V+N     A++IF  MQ      P+  +L  +L   +    +  G  IH Y  
Sbjct: 311 NAVISGLVQNNRQEGAVDIFRAMQSH-GCRPNTVTLASILPVFSHFSTLKGGKEIHGYAI 369

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           ++ +  N     A+ID Y+KCG +  A  VF+QI+  S+  W ++I+  A+HG   +A  
Sbjct: 370 RNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALS 429

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           L  EM    I+PD +TFT +L ACAH+G + E    F ++   + ++P ++HY CMV +L
Sbjct: 430 LFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVL 489

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
            RAG +  A   I  MP+EP   +W  LL+      ++ +G+ V   L  ++  N+ +YV
Sbjct: 490 SRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYV 549

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
           +++N+++  G W DA  +R +MKE  LKK+PG SWIE  G +  F
Sbjct: 550 IMANLYSQSGRWKDADTIRDLMKEVRLKKIPGNSWIETSGGMQRF 594


>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Brachypodium distachyon]
          Length = 532

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 191/580 (32%), Positives = 305/580 (52%), Gaps = 79/580 (13%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           L R+C++L  + Q+HA M+  GF+ +     +L+  F+S+          Y+ F      
Sbjct: 14  LWRRCRSLRQIKQVHALMVLRGFLSDPSALRELL--FASAVAVRGAIAHAYLVFDQI--- 68

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLD----NGVSVDKFSASLVLKACSRLGLI 135
            + D F++N +I+  +H   P++A+ ++  M       GV  DK +   VL+AC+ +G  
Sbjct: 69  PRPDLFMYNTLIRGAAHTAAPRDAVSLYARMARRGSCGGVRPDKITFPFVLRACTAMGAG 128

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
             G Q+H  + K    SD F++                               N++I  +
Sbjct: 129 GTGAQVHAHVVKAGCESDAFVR-------------------------------NALIGMH 157

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
              G +  A  LFD    R R                                D ++W++
Sbjct: 158 ASCGELGVASALFDG---RARE-------------------------------DAVAWSA 183

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           M+ GC + G +  A+ LFD+ P +D VSW  MI  YAK G +  AR LF+ +P+RDVV+ 
Sbjct: 184 MITGCARRGDIVAARKLFDECPVKDHVSWNVMITAYAKRGEMAPARVLFNRIPERDVVSW 243

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           NAM+ G+VR G  + A+E+F+ MQ  +   PD  +++ +LSA A  G ID G  +H  L 
Sbjct: 244 NAMISGHVRCGSHVYAMELFEQMQ-RMGQKPDVVTMLSLLSACADSGDIDVGRRLHSSLS 302

Query: 376 KDQFSLNGKH---GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
            + F   G     G ALIDMY+KCGS+++A++VF  + D  V  WN++I GLA+HG    
Sbjct: 303 -EMFLRTGFTVILGNALIDMYAKCGSMKSALQVFWVMRDKDVSTWNSIIGGLALHGHVLE 361

Query: 433 AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV 492
           + D+  +M +  + PD+ITF  +L AC+H G+V +G   F LM+  +++EP ++HYGCMV
Sbjct: 362 SIDVFKKMLKEKVRPDEITFVAVLIACSHGGMVDKGREYFNLMQHHYRIEPNVKHYGCMV 421

Query: 493 DILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552
           D+LGRAG ++ A   I+ M +EPN VIWRTLL ACR +  + + E   + L+   +  S 
Sbjct: 422 DMLGRAGLLKEAFEFIDTMKVEPNSVIWRTLLGACRVHGEIELAEHANRQLLKARNDESG 481

Query: 553 SYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
            YVLLSN++A  G W+++ ++R +M +  + K  G + ++
Sbjct: 482 DYVLLSNIYASAGEWSESEKMRKLMDDSGVNKQAGRTVVD 521


>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
 gi|219886289|gb|ACL53519.1| unknown [Zea mays]
          Length = 537

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 191/583 (32%), Positives = 309/583 (53%), Gaps = 82/583 (14%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           L R+C++L  + Q+HA M+  GF+ ++    +L+ + S+      T  AR +F +     
Sbjct: 14  LWRRCRSLRQIKQVHALMVLQGFLSDSSALRELIFA-SAVGVRGGTAHARLVFDRI---- 68

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVD-------KFSASLVLKACSRL 132
              D F++N +I+  +H   P++A+ ++  M  +    D       K +   VL+AC+ +
Sbjct: 69  PHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAM 128

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
           G  E G Q+H  + K    SD F++                               N++I
Sbjct: 129 GAGETGAQVHAHVVKAGCESDAFVR-------------------------------NALI 157

Query: 193 DGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLIS 252
             +   G++ +A  LFD                 G A+                  D ++
Sbjct: 158 GMHATLGDLGAAAALFD-----------------GEAR-----------------EDAVA 183

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
           W++M+ G  + G +  A+ LFD+ P +D+VSW  MI  YAKLG +  AR LFD  P RDV
Sbjct: 184 WSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDV 243

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           V+ NAM+ GYVR G   +A+E+F+ MQ  +   PD  +++ +LSA A  G +D G  +H 
Sbjct: 244 VSWNAMISGYVRCGSRKQAMELFEQMQA-MGEKPDTVTMLSLLSACADSGDLDAGRRLHG 302

Query: 373 YLEKDQFSLNGKH---GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
           +L   +FS  G     G ALIDMY+KCGS+ +A++VF  ++D +V  WN++I GLA+HG 
Sbjct: 303 FLS-GRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGH 361

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
              +  +  +M + +++PD+ITF  +L AC+H G+V +G   F LM++ +++EP ++HYG
Sbjct: 362 ATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYG 421

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549
           CMVD+L R G ++ A   I  M +EPN VIWRTLL ACR +  + + E   + L+   S 
Sbjct: 422 CMVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARSD 481

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
            S  +VLLSN++A +G W  +  +R +M +  + K  G + I+
Sbjct: 482 ASGDFVLLSNIYASVGEWPGSENMRKLMDDSGVNKEAGRAVID 524


>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
          Length = 537

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 191/583 (32%), Positives = 309/583 (53%), Gaps = 82/583 (14%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           L R+C++L  + Q+HA M+  GF+ ++    +L+ + S+      T  AR +F +     
Sbjct: 14  LWRRCRSLRQIKQVHALMVLQGFLSDSSALRELIFA-SAVGVRGGTAHARLVFDRI---- 68

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVD-------KFSASLVLKACSRL 132
              D F++N +I+  +H   P++A+ ++  M  +    D       K +   VL+AC+ +
Sbjct: 69  PHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAM 128

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
           G  E G Q+H  + K    SD F++                               N++I
Sbjct: 129 GAGETGAQVHAHVVKAGCESDAFVR-------------------------------NALI 157

Query: 193 DGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLIS 252
             +   G++ +A  LFD                 G A+                  D ++
Sbjct: 158 GMHATLGDLGAAAALFD-----------------GEAR-----------------EDAVA 183

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
           W++M+ G  + G +  A+ LFD+ P +D+VSW  MI  YAKLG +  AR LFD  P RDV
Sbjct: 184 WSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDV 243

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           V+ NAM+ GYVR G   +A+E+F+ MQ  +   PD  +++ +LSA A  G +D G  +H 
Sbjct: 244 VSWNAMISGYVRCGSRKQAMELFEQMQA-MGEKPDTVTMLSLLSACADSGDLDAGRRLHG 302

Query: 373 YLEKDQFSLNGKH---GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
           +L   +FS  G     G ALIDMY+KCGS+ +A++VF  ++D +V  WN++I GLA+HG 
Sbjct: 303 FLS-GRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGH 361

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
              +  +  +M + +++PD+ITF  +L AC+H G+V +G   F LM++ +++EP ++HYG
Sbjct: 362 ATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYG 421

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549
           CMVD+L R G ++ A   I  M +EPN VIWRTLL ACR +  + + E   + L+   S 
Sbjct: 422 CMVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARSD 481

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
            S  +VLLSN++A +G W  +  +R +M +  + K  G + I+
Sbjct: 482 ASGDFVLLSNIYASVGEWPGSENMRKLMDDSGVNKEAGRAVID 524


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 185/466 (39%), Positives = 277/466 (59%), Gaps = 16/466 (3%)

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSG-------NIESARELFDSM---PIRERNLI 219
           +++AR+ F ++   +  S+N++I     S        N   A   F  M    + E N  
Sbjct: 65  IKYARKFFSQIHHPNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKF 124

Query: 220 SWNSVLNGYAQL---KSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM 276
           ++  VL   A+L   + G Q    + +     D    ++++   V CG M DA  LF + 
Sbjct: 125 TFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQT 184

Query: 277 P-KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
             + +VV W  MIDGY ++G +  +R LFD MP + VV+ N M+ G  +NG+  +A+E+F
Sbjct: 185 RLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMF 244

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
            +MQ    + P+  +LV VL A+++LG I+ G  +H + EK++  ++   G ALIDMYSK
Sbjct: 245 HDMQLG-DVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSK 303

Query: 396 CGSIENAIKVFEQIEDGSVD-HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTG 454
           CGSI+ A++VFE I +      W+A+I GLA+HG    A D    M++  + P D+ + G
Sbjct: 304 CGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIG 363

Query: 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPME 514
           +L+AC+HAGLV+EG   +  M  I  L P ++HYGCMVD+LGRAG +E A  LI +MP++
Sbjct: 364 VLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVK 423

Query: 515 PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVR 574
           P+DVI + LL AC+ + N+ +GE +AK L+G    +S SYV LSNMFA  G W    +VR
Sbjct: 424 PDDVILKALLGACKMHGNIEMGERIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVR 483

Query: 575 SMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
             MKE +++K PGCSWIEL+GV+HEF V D S  +   I+ ML+ M
Sbjct: 484 LKMKELDIRKDPGCSWIELDGVIHEFLVEDDSHPRAEGIHSMLEEM 529



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 140/467 (29%), Positives = 241/467 (51%), Gaps = 62/467 (13%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           + +CKT   + QIHA  I TG I +     +L+   + S    + ++AR  F + H    
Sbjct: 22  ISRCKTTRHLKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREI-KYARKFFSQIH---- 76

Query: 81  KKDPFLWNAIIKTYSHG-------LDPKEALVMFCLMLDNG-VSVDKFSASLVLKACSRL 132
             + F WN II+  +         ++  EAL+ F  ML +G V  +KF+   VLKAC++L
Sbjct: 77  HPNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKL 136

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS-YNSM 191
             IEEG Q+HG + K+   SD F+++ L+ +YV CG ++ A  LF +  +  +V  +N M
Sbjct: 137 ARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVM 196

Query: 192 IDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL- 250
           IDGYV+ G++ ++RELFDSMP   ++++SWN +++G AQ     + A ++F  M   D+ 
Sbjct: 197 IDGYVRMGDLRASRELFDSMP--NKSVVSWNVMISGCAQ-NGHFKEAIEMFHDMQLGDVP 253

Query: 251 ---ISWNSMLH-----GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
              ++  S+L      G ++ GK     A  +++   DV+  A +ID Y+K G +D A +
Sbjct: 254 PNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSA-LIDMYSKCGSIDKAVQ 312

Query: 303 LFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
           +F+ +  K++ +  +A++GG   +G +  AL+ F  MQ +  + P D   + VLSA +  
Sbjct: 313 VFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQ-QAGVTPSDVVYIGVLSACSHA 371

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
           G +++G +I+ ++                          N + +  +IE     H+  M+
Sbjct: 372 GLVEEGRSIYYHM-------------------------VNIVGLLPRIE-----HYGCMV 401

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
           + L   G  E A  L++ M    ++PDD+    LL AC   G ++ G
Sbjct: 402 DLLGRAGCLEEAEQLILNM---PVKPDDVILKALLGACKMHGNIEMG 445


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 195/655 (29%), Positives = 336/655 (51%), Gaps = 69/655 (10%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCT----------PL-TEFARYIFFKYHAFR-- 79
           +H R+I +G + + +L   L+  +S +             PL T F+       +A R  
Sbjct: 36  VHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGD 95

Query: 80  -----------EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA 128
                       ++D   W  +I  Y +     +A+ +   M+  G+   +F+ + VL +
Sbjct: 96  MDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLAS 155

Query: 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY 188
            +    +E G ++H  + K+    ++ + N L+++Y +CG    A+ +FD+M ++D  S+
Sbjct: 156 VAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSW 215

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ----LKSGLQFAWQIFEK 244
           N+MI  +++ G ++ A   F+ M   ER++++WNS+++GY Q    L++   F+  + + 
Sbjct: 216 NAMIALHMQVGQMDLAMAQFEQMA--ERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDS 273

Query: 245 MPERDLISWNSMLHGCV-----------------------------------KCGKMDDA 269
           M   D  +  S+L  C                                    +CG ++ A
Sbjct: 274 MLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETA 333

Query: 270 QALFDKMPKRD--VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGY 327
           + L ++   +D  +  +  ++DGY KLG ++ A+ +FD +  RDVVA  AM+ GY ++G 
Sbjct: 334 RRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGL 393

Query: 328 SMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV 387
             +A+ +F +M  E    P+  +L  +LS  + L  +  G  IH    K     +     
Sbjct: 394 YGEAINLFRSMVGE-EQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSN 452

Query: 388 ALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE 446
           ALI MY+K GSI +A + F+ I  +     W +MI  LA HG  E A +L   M    + 
Sbjct: 453 ALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLR 512

Query: 447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARN 506
           PD IT+ G+ +AC HAGLV +G   F++M+ + K+ P L HY CMVD+ GRAG ++ A+ 
Sbjct: 513 PDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQE 572

Query: 507 LIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGM 566
            IE MP+EP+ V W +LLSACR Y+N+++G+  A+ L+ ++  NS +Y  L+N+++  G 
Sbjct: 573 FIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGK 632

Query: 567 WNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMW 621
           W +A ++R  MK+  +KK  G SWIE++  VH F V D    Q  +IY  +  +W
Sbjct: 633 WEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITMKKIW 687



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 104/434 (23%), Positives = 168/434 (38%), Gaps = 109/434 (25%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI----- 71
           +L  C  L  +    QIH+ ++TTGF  +  +   L++ +S   C  +    R I     
Sbjct: 285 VLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSR--CGGVETARRLIEQRGT 342

Query: 72  --------------FFKYHAFREKKDPF---------LWNAIIKTY-SHGLDPKEALVMF 107
                         + K     E K+ F          W A+I  Y  HGL   EA+ +F
Sbjct: 343 KDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGL-YGEAINLF 401

Query: 108 CLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRC 167
             M+      + ++ + +L   S L  +  G QIHG   K      + + N LI++Y + 
Sbjct: 402 RSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKA 461

Query: 168 GYLEFARQLFDKMGI-RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLN 226
           G +  A + FD +   RD+VS+ SMI    + G+ E A ELF++M               
Sbjct: 462 GSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETM--------------- 506

Query: 227 GYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV---- 282
               L  GL+            D I++  +   C   G ++  +  FD M   D +    
Sbjct: 507 ----LMEGLR-----------PDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTL 551

Query: 283 -SWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
             +A M+D + + G +  A+   ++MP                                 
Sbjct: 552 SHYACMVDLFGRAGLLQEAQEFIEKMP--------------------------------- 578

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKG-VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE 400
             + PD  +   +LSA     +ID G VA  R L  +    N     AL ++YS CG  E
Sbjct: 579 --IEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLE--PENSGAYSALANLYSACGKWE 634

Query: 401 NAIKVFEQIEDGSV 414
            A K+ + ++DG V
Sbjct: 635 EAAKIRKSMKDGRV 648



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 106/226 (46%), Gaps = 10/226 (4%)

Query: 8   NQPCNSTQSTLL-LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTE 66
            +P + T + +L +     +L    QIH   + +G I +  ++  L+  ++ +    +T 
Sbjct: 409 QRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAG--SITS 466

Query: 67  FARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVL 126
            +R     +   R ++D   W ++I   +     +EAL +F  ML  G+  D  +   V 
Sbjct: 467 ASR----AFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVF 522

Query: 127 KACSRLGLIEEGLQIHGLLRKV-AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-D 184
            AC+  GL+ +G Q   +++ V      L    C++ L+ R G L+ A++  +KM I  D
Sbjct: 523 SACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPD 582

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRE-RNLISWNSVLNGYA 229
            V++ S++       NI+  +   + + + E  N  +++++ N Y+
Sbjct: 583 VVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYS 628


>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Glycine max]
          Length = 529

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 187/584 (32%), Positives = 300/584 (51%), Gaps = 78/584 (13%)

Query: 37  MITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDP--FLWNAIIKTY 94
           MI T   ++  L  + +++ S+  C  L            AF   ++P   ++NA+I+  
Sbjct: 1   MIKTNTTQDCFLVNQFISACSNLSCINLAA---------SAFANVQNPNVLVFNALIRGC 51

Query: 95  SHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDL 154
            H    ++ALV +  ML N V    +S S ++KAC+ L     G  +HG + K  F S +
Sbjct: 52  VHCCYSEQALVHYMHMLRNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHV 111

Query: 155 FLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR 214
           F+Q                                ++I+ Y   G++  +R +FD M   
Sbjct: 112 FVQT-------------------------------TLIEFYSTFGDVGGSRRVFDDM--- 137

Query: 215 ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFD 274
                                          PERD+ +W +M+   V+ G M  A  LFD
Sbjct: 138 -------------------------------PERDVFAWTTMISAHVRDGDMASAGRLFD 166

Query: 275 KMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEI 334
           +MP+++V +W  MIDGY KLG  + A  LF++MP RD+++   MM  Y RN    + + +
Sbjct: 167 EMPEKNVATWNAMIDGYGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIAL 226

Query: 335 FDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYS 394
           F ++  +  + PD+ ++  V+SA A LG +  G  +H YL    F L+   G +LIDMY+
Sbjct: 227 FHDV-IDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYA 285

Query: 395 KCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTG 454
           KCGSI+ A+ VF +++  ++  WN +I+GLA HG  E A  +  EMER  I P+ +TF  
Sbjct: 286 KCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFIS 345

Query: 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPME 514
           +L AC HAG ++EG   F  M + + + P+++HYGCMVD+L +AG +E A  +I +M +E
Sbjct: 346 ILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTVE 405

Query: 515 PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVR 574
           PN  IW  LL+ C+ ++NL +     ++L+ ++ SNS  Y LL NM+A    WN+  ++R
Sbjct: 406 PNSFIWGALLNGCKLHKNLEIAHIAVQNLMVLEPSNSGHYSLLVNMYAEENRWNEVAKIR 465

Query: 575 SMMKERNL-KKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           + MK+  + K+ PG SW+E+   VH F   D        ++ +L
Sbjct: 466 TTMKDLGVEKRCPGSSWVEINKTVHLFAASDTYHPSYSQLHLLL 509


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 197/619 (31%), Positives = 326/619 (52%), Gaps = 67/619 (10%)

Query: 20  LLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           LL+ C   +D+    +IH  +IT+GF  N    T +V  ++           R I   Y+
Sbjct: 36  LLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVNMYAK---------CRQINDAYN 86

Query: 77  AFRE--KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
            F    ++D   WN +I  Y+     K AL++   M + G   D  +   +L A +   L
Sbjct: 87  MFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRL 146

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           +  G+ +HG + +  F S + +   L+ +Y +C                           
Sbjct: 147 LRIGMAVHGYVLRAGFESLVNVSTALVDMYSKC--------------------------- 179

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN 254
               G++  AR +FD M    R ++SWNS+++GY Q     + A  IF+KM +  +   N
Sbjct: 180 ----GSVSIARVIFDGMD--HRTVVSWNSMIDGYVQ-SGDAEGAMLIFQKMLDEGVQPTN 232

Query: 255 ----SMLHGCVKCGKMDDAQ---ALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRLFDE 306
                 LH C   G ++  +    L D++    DV    ++I  Y+K  RVDIA  +F  
Sbjct: 233 VTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKN 292

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           +  + +V+ NAM+ GY +NG   +AL  F  MQ    + PD  ++V V+ A+A+L    +
Sbjct: 293 LRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSR-NIKPDSFTMVSVIPALAELSIPRQ 351

Query: 367 -----GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
                G+ I R+L+K+ F +      AL+DMY+KCG+I  A K+F+ +    V  WNAMI
Sbjct: 352 AKWIHGLVIRRFLDKNVFVMT-----ALVDMYAKCGAIHTARKLFDMMNARHVITWNAMI 406

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
           +G   HGLG+ + +L  EM++ +I+P+DITF   L+AC+H+GLV+EGL  FE M++ + +
Sbjct: 407 DGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGI 466

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
           EP + HYG MVD+LGRAG +  A + I+ MP++P   ++  +L AC+ ++N+++GE  A 
Sbjct: 467 EPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAF 526

Query: 542 HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
            +  ++  +   +VLL+N++A   MW    +VR++M++  L+K PGCS +E+   VH F+
Sbjct: 527 EIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFY 586

Query: 602 VRDKSRLQVRDIYYMLDNM 620
               S  Q + IY  L+ +
Sbjct: 587 SGTTSHPQSKKIYSYLETL 605


>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
 gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
          Length = 852

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 185/577 (32%), Positives = 307/577 (53%), Gaps = 47/577 (8%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           W+A+I  ++     +EA+ M   M   G+  +  + + VL AC+RL  ++ G Q+HG + 
Sbjct: 265 WSAVIGGFAQNGYDEEAIEMLFRMQVEGLVPNAQTLAGVLPACARLQRLDLGKQLHGYIT 324

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           +  F S+  + N L+ +Y RCG +  A ++F K  +++ +S N+MI GY +SG++  A+E
Sbjct: 325 RHDFISNPVVVNALVDVYRRCGDMGGAAKIFLKFSVKNVLSCNTMIVGYCESGDVSKAKE 384

Query: 207 LFDSMPIR--ERNLISWNSVLNGYAQ---------------------------------- 230
           LFD M +   ER LISWNS+++GY +                                  
Sbjct: 385 LFDCMDVLGIERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPDSFTLGSVLTAC 444

Query: 231 -----LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWA 285
                L+ G +   Q   K  + D     +++    KC  +  AQ  FD++ ++DV +W 
Sbjct: 445 ADTISLRQGKEIHAQAIVKGLQSDTFVGGALVEMYSKCQDLTAAQVAFDEVMEKDVPTWN 504

Query: 286 NMIDGYAKLGRVDIARRLFDEMP----KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
            +I GY +  +++  + L ++M       ++   N+++ G V N      +++F  MQ  
Sbjct: 505 ALISGYTRSNQIERIQYLLEKMKGDGYHPNIYTWNSILAGLVENRQLDLTMQLFSEMQIS 564

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIEN 401
             L PD  ++ I+L A ++L  +++G   H +  K  +  +   G AL+DMY+KCGS++ 
Sbjct: 565 -KLRPDIYTVGIILPACSRLATLERGKQAHAHSIKCGYDTDVHIGAALVDMYAKCGSLKY 623

Query: 402 AIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461
           A   +++I + ++   NAM+   A+HG GE    L   M  L   PD +TF  +L++C H
Sbjct: 624 AQLAYDRISNPNLVSHNAMLTACAMHGHGEEGISLFQTMLALGFIPDHVTFLSVLSSCVH 683

Query: 462 AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWR 521
            G V+ G   F+LM   + ++P L+HY  MVD+L R+G +  A  LI+ MP+E + V+W 
Sbjct: 684 VGSVETGCEFFDLMG-YYNVKPTLKHYTSMVDLLSRSGQLHEAYELIKKMPVECDSVLWG 742

Query: 522 TLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581
            LL  C  + N+ +GE  A+ LI ++ +NS +YVLL+N+ A    W D  RVR MMK+R 
Sbjct: 743 ALLGGCVTHGNIELGEIAAERLIELEPNNSGNYVLLANLHAYARRWTDLARVRGMMKDRG 802

Query: 582 LKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           + K PGCSWIE +  +H F   D+S  +  +IY  LD
Sbjct: 803 MHKSPGCSWIEDKNEIHSFLACDRSHKRAEEIYATLD 839



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 163/554 (29%), Positives = 262/554 (47%), Gaps = 74/554 (13%)

Query: 8   NQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF 67
           N+P N+++   +L   CK      Q+HA  I TGF  +  + TKL+  ++        +F
Sbjct: 57  NKPLNTSKYASVL-DSCKCPKLGKQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKDADF 115

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTY-SHGLDPKEALVMFCLMLDNGVSVDKFSASLVL 126
                F+    R       W AI+  Y  HGL  +EA ++F ++  +GV +D F   LV 
Sbjct: 116 ----LFETMPMRNLHS---WKAILSVYLDHGLF-EEAFLLFQVLQFDGVELDFFVFPLVF 167

Query: 127 KACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSV 186
           KACS LG +E G Q+HGL+ K  F  ++++ N LI +Y +CG L+ A+++  KM  RDSV
Sbjct: 168 KACSGLGSVELGRQLHGLVIKFRFCLNIYVSNALIDMYGKCGSLDDAKKVLVKMPERDSV 227

Query: 187 SYNSMIDGYVKSGNIESARELFDSMPIRE---RNLISWNSVLNGY--------------- 228
           ++NS+I     +G +  A E  + M   +    N++SW++V+ G+               
Sbjct: 228 TWNSVITACAANGMVYEALEFLEKMKSLDYSMPNVVSWSAVIGGFAQNGYDEEAIEMLFR 287

Query: 229 ---------AQLKSG----------LQFAWQIFEKMPERDLISWNSMLHGCV----KCGK 265
                    AQ  +G          L    Q+   +   D IS   +++  V    +CG 
Sbjct: 288 MQVEGLVPNAQTLAGVLPACARLQRLDLGKQLHGYITRHDFISNPVVVNALVDVYRRCGD 347

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP----KRDVVACNAMMGG 321
           M  A  +F K   ++V+S   MI GY + G V  A+ LFD M     +R +++ N+++ G
Sbjct: 348 MGGAAKIFLKFSVKNVLSCNTMIVGYCESGDVSKAKELFDCMDVLGIERGLISWNSIISG 407

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH-----RYLEK 376
           YVRN    +A  +F NM  E  + PD  +L  VL+A A    + +G  IH     + L+ 
Sbjct: 408 YVRNFMFDEAFSMFQNMLMEEGIEPDSFTLGSVLTACADTISLRQGKEIHAQAIVKGLQS 467

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
           D F      G AL++MYSKC  +  A   F+++ +  V  WNA+I+G       E    L
Sbjct: 468 DTFV-----GGALVEMYSKCQDLTAAQVAFDEVMEKDVPTWNALISGYTRSNQIERIQYL 522

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM----RRIHKLEPELQHYGCMV 492
           L +M+     P+  T+  +L     AGLV+   L   +      +I KL P++   G ++
Sbjct: 523 LEKMKGDGYHPNIYTWNSIL-----AGLVENRQLDLTMQLFSEMQISKLRPDIYTVGIIL 577

Query: 493 DILGRAGHIEAARN 506
               R   +E  + 
Sbjct: 578 PACSRLATLERGKQ 591



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 127/473 (26%), Positives = 218/473 (46%), Gaps = 68/473 (14%)

Query: 107 FCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVR 166
           F L+ +  ++  K+++ L    C +LG      Q+H    K  F +D F+   L+ +Y R
Sbjct: 52  FSLLDNKPLNTSKYASVLDSCKCPKLGK-----QVHAHTIKTGFDADGFIDTKLLQMYAR 106

Query: 167 CGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSV 224
           CG L+ A  LF+ M +R+  S+ +++  Y+  G  E A  LF  +     E +   +  V
Sbjct: 107 CGLLKDADFLFETMPMRNLHSWKAILSVYLDHGLFEEAFLLFQVLQFDGVELDFFVFPLV 166

Query: 225 L---NGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV 281
               +G   ++ G Q    + +     ++   N+++    KCG +DDA+ +  KMP+RD 
Sbjct: 167 FKACSGLGSVELGRQLHGLVIKFRFCLNIYVSNALIDMYGKCGSLDDAKKVLVKMPERDS 226

Query: 282 VSWANMIDGYAKLGRVDIARRLFDEMPKRD-----VVACNAMMGGYVRNGYSMKALEIFD 336
           V+W ++I   A  G V  A    ++M   D     VV+ +A++GG+ +NGY  +A+E+  
Sbjct: 227 VTWNSVITACAANGMVYEALEFLEKMKSLDYSMPNVVSWSAVIGGFAQNGYDEEAIEMLF 286

Query: 337 NMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC 396
            MQ E  L P+  +L  VL A A+L  +D G  +H Y+ +  F  N     AL+D+Y +C
Sbjct: 287 RMQVE-GLVPNAQTLAGVLPACARLQRLDLGKQLHGYITRHDFISNPVVVNALVDVYRRC 345

Query: 397 GSIENAIKVFEQI----------------EDGSVDH-------------------WNAMI 421
           G +  A K+F +                 E G V                     WN++I
Sbjct: 346 GDMGGAAKIFLKFSVKNVLSCNTMIVGYCESGDVSKAKELFDCMDVLGIERGLISWNSII 405

Query: 422 NGLAIHGLGELAFDLL--MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           +G   + + + AF +   M ME   IEPD  T   +L ACA    +++G       + IH
Sbjct: 406 SGYVRNFMFDEAFSMFQNMLMEE-GIEPDSFTLGSVLTACADTISLRQG-------KEIH 457

Query: 480 K------LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
                  L+ +    G +V++  +   + AA+   +++ ME +   W  L+S 
Sbjct: 458 AQAIVKGLQSDTFVGGALVEMYSKCQDLTAAQVAFDEV-MEKDVPTWNALISG 509



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 127/296 (42%), Gaps = 50/296 (16%)

Query: 260 CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM 319
           C K GK   A  +         +    ++  YA+ G +  A  LF+ MP R++ +  A++
Sbjct: 74  CPKLGKQVHAHTIKTGFDADGFID-TKLLQMYARCGLLKDADFLFETMPMRNLHSWKAIL 132

Query: 320 GGYVRNGYSMKALEIF-----DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
             Y+ +G   +A  +F     D ++ + ++ P      +V  A + LG ++ G  +H  +
Sbjct: 133 SVYLDHGLFEEAFLLFQVLQFDGVELDFFVFP------LVFKACSGLGSVELGRQLHGLV 186

Query: 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
            K +F LN     ALIDMY KCGS+++A KV  ++                         
Sbjct: 187 IKFRFCLNIYVSNALIDMYGKCGSLDDAKKVLVKMP------------------------ 222

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
                      E D +T+  ++ ACA  G+V E L   E M+ +    P +  +  ++  
Sbjct: 223 -----------ERDSVTWNSVITACAANGMVYEALEFLEKMKSLDYSMPNVVSWSAVIGG 271

Query: 495 LGRAGHIEAARNLIEDMPME---PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
             + G+ E A  ++  M +E   PN      +L AC   + L++G+ +  ++   D
Sbjct: 272 FAQNGYDEEAIEMLFRMQVEGLVPNAQTLAGVLPACARLQRLDLGKQLHGYITRHD 327


>gi|115448475|ref|NP_001048017.1| Os02g0730900 [Oryza sativa Japonica Group]
 gi|46390470|dbj|BAD15931.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|46390866|dbj|BAD16370.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537548|dbj|BAF09931.1| Os02g0730900 [Oryza sativa Japonica Group]
 gi|125541007|gb|EAY87402.1| hypothetical protein OsI_08809 [Oryza sativa Indica Group]
 gi|125583571|gb|EAZ24502.1| hypothetical protein OsJ_08263 [Oryza sativa Japonica Group]
          Length = 488

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 152/367 (41%), Positives = 234/367 (63%), Gaps = 1/367 (0%)

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
            S++    + G++ DA+ +FD MP + VVSW  ++DG  +   +D A  +F EMP+R+VV
Sbjct: 104 TSLVRVYARLGRLGDARKMFDGMPVKTVVSWNVLLDGIVRASDLDAAWEVFVEMPERNVV 163

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
           + N ++ G+VR+G+  +A+++F  M     L PD+A++V  +SA+  +G +  G   H Y
Sbjct: 164 SWNTVIAGFVRHGWVQEAVDLFAEMTVVYGLAPDEATMVGFVSAVRDMGVLGIGRCAHGY 223

Query: 374 LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
           + + +FSL+G  GVALI+MY++CGS+ +A + F  +   +V+ W ++I G A HG  E+A
Sbjct: 224 VIRREFSLDGALGVALINMYTRCGSMGDAFRCFSSVASKNVEQWTSVIGGFAAHGHPEMA 283

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493
             L  EM +L IEP+ +TF  +LNAC+H GLV EG   F LMR +  ++  +QHYGC++D
Sbjct: 284 LRLFTEMRQLGIEPNGVTFLAVLNACSHGGLVNEGFKYFNLMRSM-GIKSTMQHYGCLID 342

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS 553
           +LGRAG +E A  L   +P +P  VIW +LL+AC+++ N+ + E  A+ L   +  + SS
Sbjct: 343 LLGRAGFLEEAFELASSLPEDPGLVIWSSLLAACQSHGNVEMAEVAARKLAHAEPRHGSS 402

Query: 554 YVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
           YVLLSN +A  G W D +R R  M+E  + K PG SWIEL+G VH F   DK   +  DI
Sbjct: 403 YVLLSNTYARAGQWEDLKRTRRKMEEYGVMKQPGLSWIELDGRVHSFVSADKLHTESEDI 462

Query: 614 YYMLDNM 620
           Y ML+++
Sbjct: 463 YQMLEDL 469



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 162/325 (49%), Gaps = 21/325 (6%)

Query: 125 VLKACSRL--GLIEEGLQIHGLLRKVAFG---SDLFLQNCLISLYVRCGYLEFARQLFDK 179
            L AC+RL      E  QIH LL K       S ++    L+ +Y R G L  AR++FD 
Sbjct: 66  ALAACARLLPSAAAEAEQIHALLVKSGDPPSVSGVYASTSLVRVYARLGRLGDARKMFDG 125

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAW 239
           M ++  VS+N ++DG V++ ++++A E+F  MP  ERN++SWN+V+ G+ +    +Q A 
Sbjct: 126 MPVKTVVSWNVLLDGIVRASDLDAAWEVFVEMP--ERNVVSWNTVIAGFVR-HGWVQEAV 182

Query: 240 QIFEKMP--------ERDLISWNSMLH--GCVKCGKMDDAQALFDKMPKRDVVSWANMID 289
            +F +M         E  ++ + S +   G +  G+      +  +      +  A +I+
Sbjct: 183 DLFAEMTVVYGLAPDEATMVGFVSAVRDMGVLGIGRCAHGYVIRREFSLDGALGVA-LIN 241

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
            Y + G +  A R F  +  ++V    +++GG+  +G+   AL +F  M+ +L + P+  
Sbjct: 242 MYTRCGSMGDAFRCFSSVASKNVEQWTSVIGGFAAHGHPEMALRLFTEMR-QLGIEPNGV 300

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           + + VL+A +  G +++G      +         +H   LID+  + G +E A ++   +
Sbjct: 301 TFLAVLNACSHGGLVNEGFKYFNLMRSMGIKSTMQHYGCLIDLLGRAGFLEEAFELASSL 360

Query: 410 -EDGSVDHWNAMINGLAIHGLGELA 433
            ED  +  W++++     HG  E+A
Sbjct: 361 PEDPGLVIWSSLLAACQSHGNVEMA 385



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 8/149 (5%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           W ++I  ++    P+ AL +F  M   G+  +  +   VL ACS  GL+ EG +   L+R
Sbjct: 267 WTSVIGGFAAHGHPEMALRLFTEMRQLGIEPNGVTFLAVLNACSHGGLVNEGFKYFNLMR 326

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS-VSYNSMIDGYVKSGNIE--- 202
            +   S +    CLI L  R G+LE A +L   +      V ++S++      GN+E   
Sbjct: 327 SMGIKSTMQHYGCLIDLLGRAGFLEEAFELASSLPEDPGLVIWSSLLAACQSHGNVEMAE 386

Query: 203 -SARELFDSMPIRERNLISWNSVLNGYAQ 230
            +AR+L  + P   R+  S+  + N YA+
Sbjct: 387 VAARKLAHAEP---RHGSSYVLLSNTYAR 412



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 116/268 (43%), Gaps = 41/268 (15%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLM-LDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
           WN +I  +      +EA+ +F  M +  G++ D+ +    + A   +G++  G   HG +
Sbjct: 165 WNTVIAGFVRHGWVQEAVDLFAEMTVVYGLAPDEATMVGFVSAVRDMGVLGIGRCAHGYV 224

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
            +  F  D  L   LI++Y RCG +  A + F  +  ++   + S+I G+   G+ E A 
Sbjct: 225 IRREFSLDGALGVALINMYTRCGSMGDAFRCFSSVASKNVEQWTSVIGGFAAHGHPEMAL 284

Query: 206 ELFDSMPIR--ERNLISWNSVLNGYAQ------------------LKSGLQF-------- 237
            LF  M     E N +++ +VLN  +                   +KS +Q         
Sbjct: 285 RLFTEMRQLGIEPNGVTFLAVLNACSHGGLVNEGFKYFNLMRSMGIKSTMQHYGCLIDLL 344

Query: 238 --------AWQIFEKMPE-RDLISWNSMLHGCVKCGKMDDAQALFDKMP---KRDVVSWA 285
                   A+++   +PE   L+ W+S+L  C   G ++ A+    K+     R   S+ 
Sbjct: 345 GRAGFLEEAFELASSLPEDPGLVIWSSLLAACQSHGNVEMAEVAARKLAHAEPRHGSSYV 404

Query: 286 NMIDGYAKLGRVDIARRLFDEMPKRDVV 313
            + + YA+ G+ +  +R   +M +  V+
Sbjct: 405 LLSNTYARAGQWEDLKRTRRKMEEYGVM 432


>gi|297804490|ref|XP_002870129.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315965|gb|EFH46388.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 853

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 172/449 (38%), Positives = 258/449 (57%), Gaps = 22/449 (4%)

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK 232
           A QLFD++   D+ SYN M+  YV++GN E A+  F+ MP ++    SWN+++ GYA+ +
Sbjct: 112 AHQLFDEIPEPDTFSYNIMLSCYVRNGNFEKAQSFFNRMPFKD--AASWNTMITGYAR-R 168

Query: 233 SGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYA 292
             ++ A  +F  M E++ +SWN+M+ G ++CG ++ A   F   P R VV+W  MI GY 
Sbjct: 169 GEMEKARVLFYSMMEKNEVSWNAMISGYIECGDLEKAAHFFKAAPFRGVVAWTAMITGYM 228

Query: 293 KLGRVDIARRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASL 351
           K  +V++A  +F +M  K+++V  NAM+ GYV N      L++F  M  E  + P+ + L
Sbjct: 229 KAKKVELAEAMFKDMTVKKNLVTWNAMISGYVENSRPEDGLKLFRAM-LEEGIRPNSSGL 287

Query: 352 VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED 411
              L   ++L  +  G  IH+                 I MY KCG + +A K+FE ++ 
Sbjct: 288 SSALLGCSELSALCLGRQIHQ-----------------IVMYCKCGELGDAWKLFEAMKK 330

Query: 412 GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC 471
             V  WNAMI+G A HG  E A  L  EM     +PD ITF  +L AC HAGLV  G+  
Sbjct: 331 KDVVAWNAMISGYAQHGNAEKALCLFHEMRDSKTKPDWITFVAVLLACNHAGLVDIGMTY 390

Query: 472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYE 531
           F+ M R +++EP   HY CMVD+LGRAG +E A  LI  MP  P+  ++ TLL ACR ++
Sbjct: 391 FDSMVRDYRVEPRPDHYTCMVDLLGRAGKVEEALKLIRSMPFRPHAAVFGTLLGACRVHK 450

Query: 532 NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           N+ + E  A+ L+ +D  N++ YV L+N++A   +W D  RVR  MKE N+ K+PG SWI
Sbjct: 451 NVELAEFAAEKLLELDPRNAAGYVQLANIYASKNLWEDVARVRKRMKESNVVKVPGYSWI 510

Query: 592 ELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           E+   +H F   D+   ++  I+  L  +
Sbjct: 511 EIRNKIHHFRSSDRIHPELDSIHKKLKEL 539



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 161/397 (40%), Gaps = 103/397 (25%)

Query: 72  FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLD-NGVSVDKFSASLVLKACS 130
           FF    F   KD   WN +I  Y+   + ++A V+F  M++ N VS              
Sbjct: 146 FFNRMPF---KDAASWNTMITGYARRGEMEKARVLFYSMMEKNEVS-------------- 188

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
                                      N +IS Y+ CG LE A   F     R  V++ +
Sbjct: 189 --------------------------WNAMISGYIECGDLEKAAHFFKAAPFRGVVAWTA 222

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGY---AQLKSGLQFAWQIFEKMPE 247
           MI GY+K+  +E A  +F  M ++ +NL++WN++++GY   ++ + GL+    + E+   
Sbjct: 223 MITGYMKAKKVELAEAMFKDMTVK-KNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIR 281

Query: 248 RDLISWNSMLHGC------------------VKCGKMDDAQALFDKMPKRDVVSWANMID 289
            +    +S L GC                   KCG++ DA  LF+ M K+DVV+W  MI 
Sbjct: 282 PNSSGLSSALLGCSELSALCLGRQIHQIVMYCKCGELGDAWKLFEAMKKKDVVAWNAMIS 341

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
           GYA+ G  + A  LF EM  RD                                  PD  
Sbjct: 342 GYAQHGNAEKALCLFHEM--RDSKT------------------------------KPDWI 369

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKD-QFSLNGKHGVALIDMYSKCGSIENAIKVFEQ 408
           + V VL A    G +D G+     + +D +      H   ++D+  + G +E A+K+   
Sbjct: 370 TFVAVLLACNHAGLVDIGMTYFDSMVRDYRVEPRPDHYTCMVDLLGRAGKVEEALKLIRS 429

Query: 409 IE-DGSVDHWNAMINGLAIHG---LGELAFDLLMEME 441
           +        +  ++    +H    L E A + L+E++
Sbjct: 430 MPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLELD 466



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 83/178 (46%), Gaps = 10/178 (5%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           +KKD   WNA+I  Y+   + ++AL +F  M D+    D  +   VL AC+  GL++ G+
Sbjct: 329 KKKDVVAWNAMISGYAQHGNAEKALCLFHEMRDSKTKPDWITFVAVLLACNHAGLVDIGM 388

Query: 140 Q-IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS-YNSMIDGYVK 197
                ++R            C++ L  R G +E A +L   M  R   + + +++     
Sbjct: 389 TYFDSMVRDYRVEPRPDHYTCMVDLLGRAGKVEEALKLIRSMPFRPHAAVFGTLLGACRV 448

Query: 198 SGNIE----SARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI 251
             N+E    +A +L +  P   RN   +  + N YA  K+  +   ++ ++M E +++
Sbjct: 449 HKNVELAEFAAEKLLELDP---RNAAGYVQLANIYAS-KNLWEDVARVRKRMKESNVV 502


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 198/642 (30%), Positives = 336/642 (52%), Gaps = 57/642 (8%)

Query: 25  KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDP 84
           +++   +Q+HA + T+G I +      L+ S ++    P     R++ +    F     P
Sbjct: 10  RSVRQASQLHAILTTSGRIAHRPSAEHLLNSLTNCLSAP-----RHLRYVLSLFDRLPHP 64

Query: 85  --FLWNAIIKT---YSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
             FL +  ++     S G D    +++   M   GV +  F+   V + C+         
Sbjct: 65  TTFLHDTALRACLQASAGAD--HPVLILRRMRRGGVRMSAFTFHFVFRCCAAGAGAGLCR 122

Query: 140 QIHGL-LRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
            +H   LR +   +   + N LI +Y   G  + AR+ FD++ ++D+V + ++I G V+ 
Sbjct: 123 MLHAACLRTMLPSAARIVANPLIHMYASLGLTDDARRAFDEVPVKDAVVWATVIGGLVRW 182

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQ---IFEKMPERDLISWNS 255
           G ++ AR L    P  ERN++SW S++ GY++        +    +     E D ++   
Sbjct: 183 GLLDEARRLLVQAP--ERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIG 240

Query: 256 MLHGC-----------------------------------VKCGKMDDAQALFDKMPK-R 279
            L  C                                    KCG +  AQA+FD + + +
Sbjct: 241 ALSACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQ 300

Query: 280 DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQ 339
               W  +IDGY KLG VDIAR LFD+M  RDV+  N+M+ GY+ +G    AL++F  MQ
Sbjct: 301 KPEPWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLF--MQ 358

Query: 340 CELY-LHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS 398
              + +  D+ ++V +L+A A LG + +G A+H  +E+     +     AL+DMY KCG 
Sbjct: 359 LRRHGMRADNFTVVSLLTACASLGALPQGRALHASIEQRIVEEDVYLVTALVDMYMKCGR 418

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
           ++ A  VF ++ +  V  W+AMI GLA +G+G  A +   +M+R   +P  +T+  +L A
Sbjct: 419 VDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQMKRDGFQPTSVTYIAVLTA 478

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
           C+H+ L+ EG   F  MR +HKL P+++HYGCM+D+L R+G ++ A +L++ MPM+PN V
Sbjct: 479 CSHSSLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAV 538

Query: 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578
           IW ++LSACR ++N+++    A+HL+ +     + YV L N++     W +A+R+R +M+
Sbjct: 539 IWASILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWVEAKRIRMLME 598

Query: 579 ERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           E+ +KK  G S I + G VH+F V D+S     +I  M++ +
Sbjct: 599 EQGVKKTAGYSSITVAGQVHKFVVNDQSHPWTLEIITMMEEI 640


>gi|115471447|ref|NP_001059322.1| Os07g0260000 [Oryza sativa Japonica Group]
 gi|113610858|dbj|BAF21236.1| Os07g0260000 [Oryza sativa Japonica Group]
          Length = 750

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 211/623 (33%), Positives = 325/623 (52%), Gaps = 63/623 (10%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLV-ASFSS-SPCTPLTEFARYIF 72
           Q+ L +LR   +   + Q HAR++  G   +  L   LV A+FS+ SP        RY  
Sbjct: 3   QALLRILRTLGSTAHLTQAHARLLAAGLAASPRLLPALVAAAFSAHSP--------RYAA 54

Query: 73  FKYHAFREKKDPFLWNAIIK----------TYSHGLDPKEALVMFCLMLDNGVSVDKFSA 122
               A          N +++            +    P +AL  +  M   GV  + F+ 
Sbjct: 55  AALRAAGPAASTVSHNTLVERLAGARPRGRRPAPAPAPADALAAYAAMRAQGVPPNGFTF 114

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF-----ARQLF 177
           + +L+AC+ LGL      +HG + +  FGSD+F+QN L+ +Y RCG         ARQ+F
Sbjct: 115 TFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGGGGVGAARQVF 174

Query: 178 DKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF 237
           D+M  RD VS+NS++  Y+ SG+   A   F++MP  ERN++SWN+V+ G+A++   +  
Sbjct: 175 DEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMP--ERNVVSWNTVVAGFARMGD-MVT 231

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
           A  +F++MP R+ +SWN M+ G    G ++ A+++FD+M ++DVVSW  M+  YAK+G +
Sbjct: 232 ARAVFDRMPSRNAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGDL 291

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
           D    LFD MP +++V+ NAM+ GY  N    +AL  F  M  E    PD+A+LV V+SA
Sbjct: 292 DTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSA 351

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
            AQLG ++    I  ++ K    L    G ALIDM++KCG +  A  +F ++E   +  W
Sbjct: 352 CAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIFYKMETRCIITW 411

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
             MI+G A +GL   A  +   M R  ++ DD  F   L ACAH GL++EG   F  M  
Sbjct: 412 TTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFNEMVE 471

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
            + ++P ++HYGCMVD+LGRA  IE                                   
Sbjct: 472 RYNIQPRMEHYGCMVDLLGRAELIEY---------------------------------- 497

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVV 597
            V+K +  ++  NSS  VL+SN  A  G W+     R+ M+   ++K+PG S I++   V
Sbjct: 498 -VSKKITELEPFNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGIEKVPGSSSIQVGSEV 556

Query: 598 HEFFVRDKSRLQVRDIYYMLDNM 620
           HEF  +D    + ++IY  +D +
Sbjct: 557 HEFLAKDTRHKRRKEIYETVDGL 579


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 188/609 (30%), Positives = 328/609 (53%), Gaps = 20/609 (3%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L    T   ++++H+ +IT G   +   + KL+A ++     P + F+      +     
Sbjct: 23  LASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFR-DPTSSFS-----VFRLASP 76

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
             + +LWN+II+  +H     EAL ++       +  D ++   V+ AC+ L   E    
Sbjct: 77  SNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKS 136

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           IH  +  + FGSDL++ N LI +Y R   L+ AR++F++M +RD VS+NS+I GY  +G 
Sbjct: 137 IHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGY 196

Query: 201 IESARELF--------DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ER 248
              A E++        + +   + +L++  S+L     L   L+F   + + M     E 
Sbjct: 197 WNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHL-GDLEFGKYVHDYMITSGYEC 255

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           D  + N +++   KCG +  +Q +F  M  +D VSW +MI+ Y + G++  + ++F+ M 
Sbjct: 256 DTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMK 315

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            RD++  N ++   V +      L +   M+ E  + PD A+++ +L   + L    +G 
Sbjct: 316 ARDIITWNTIIASCVHSEDCNLGLRMISRMRTE-GVTPDMATMLSILPVCSLLAAKRQGK 374

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            IH  + K     +   G  LI+MYSKCGS+ N+ +VF+ ++   V  W A+I+   ++G
Sbjct: 375 EIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYG 434

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
            G+ A     EME   I PD + F  ++ AC+H+GLV+EGL  F  M++ +K+EP ++HY
Sbjct: 435 EGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHY 494

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
            C+VD+L R+  ++ A + I  MP++P+  IW  LLSACR   +  + E V++ +I ++ 
Sbjct: 495 ACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNP 554

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
            ++  YVL+SN++A LG W+  R +R  +K R LKK PGCSW+E++  V+ F    K   
Sbjct: 555 DDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFE 614

Query: 609 QVRDIYYML 617
           Q  ++  +L
Sbjct: 615 QFEEVNKLL 623


>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 646

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 198/664 (29%), Positives = 341/664 (51%), Gaps = 104/664 (15%)

Query: 10  PCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFAR 69
           P N+T     ++ K   L+ + Q+HA+++        H    L+     + CT L   + 
Sbjct: 3   PLNNTS----IVSKITNLHRLRQLHAQLVHHSLHHQNHWVVLLL-----TQCTRLLAPSS 53

Query: 70  YIFFKYHAFREKKDPFLWNAIIKTYSH-GLDPKEALVMFCLMLDN-GVSVDKFSASLVLK 127
           Y    +HA     D  ++  ++K YS  G+  +  + +F  ML +  +  +    S+++K
Sbjct: 54  YTCHIFHA-ATHPDVRVFTFMLKYYSQIGVRAQVPVSLFKHMLRHCNIKPNTSFYSVMMK 112

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG------ 181
           +        E +     + K  +  D +++N ++ +Y + G +EFAR+LFD+M       
Sbjct: 113 SAG-----SESMLFLAHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVAD 167

Query: 182 -----------------------------IRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
                                         R+ +++ +MI G+ K GN+++AR  FD MP
Sbjct: 168 WNVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMP 227

Query: 213 IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM-----PERDLISWNSMLHGC------- 260
             ER+++SWN++L+GYAQ     +   ++F  M      + D  +W +++  C       
Sbjct: 228 --ERSVVSWNAMLSGYAQ-GGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDPC 284

Query: 261 -----------------------------VKCGKMDDAQALFDKM---PKRDVVSWANMI 288
                                         KCG ++ A  +F+++     R  V W  MI
Sbjct: 285 LSESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMI 344

Query: 289 DGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD 348
             YA++G +  AR LFD+MP+RD V+ N+M+ GY +NG S+KA+++F+ M       PD+
Sbjct: 345 SAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDE 404

Query: 349 ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ 408
            ++V V SA   LG +  G      L+++   ++     +LI MYS+CGS+++A+ +F++
Sbjct: 405 VTMVSVFSACGHLGELGLGNWAVSILKENHIQISISVYNSLISMYSRCGSMQDAVLIFQE 464

Query: 409 IEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
           +    +  +N +I+G A HG G  + +LL++M+   IEPD IT+  +L AC+HAGL+ EG
Sbjct: 465 MATRDLVSYNTLISGFAEHGHGMESIELLLKMKEDGIEPDRITYIAILTACSHAGLLGEG 524

Query: 469 LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACR 528
              FE ++      P++ HY CM+D+LGRAG +E A  LI+ MPMEP+  I+ +LL+A  
Sbjct: 525 QRLFESIKF-----PDVDHYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATS 579

Query: 529 NYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGC 588
            ++ + +GE  A  L  ++  NS +YVLLSN++A  G W D  +VR  M+++ +KK  G 
Sbjct: 580 IHKQVELGELAAAKLFKVEPHNSGNYVLLSNIYASAGRWKDGDKVRDTMRKQGVKKTTGL 639

Query: 589 SWIE 592
           SW+E
Sbjct: 640 SWLE 643


>gi|242059435|ref|XP_002458863.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
 gi|241930838|gb|EES03983.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
          Length = 544

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 182/524 (34%), Positives = 296/524 (56%), Gaps = 24/524 (4%)

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL--Q 140
           DP  W  +++ Y+     +EA +++   +            ++LKA +     E GL   
Sbjct: 19  DPDKWAHLVREYASQSLLREAALVYARNVPRRTHHQPL-LPILLKAAATASPAEPGLGKS 77

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H    K AF  DL +   ++S+Y +CG L  AR+ FD+M  R+ +SYN+++ GY  +G+
Sbjct: 78  LHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAAAGD 137

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE--RDLISWNSMLH 258
           ++ A  LF  M  R    ++W +++ G+A+ K  +  A + FE  P   R +++W  ++H
Sbjct: 138 MDGALALFGGM--RSWTYVTWATLIRGFAK-KGDMAEARRWFETTPPGMRTVVTWTVLVH 194

Query: 259 GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
           G V  G M+ A+ +FD+MP R+   W++M+ GY K G  + A+ +F  +P R++V  NA+
Sbjct: 195 GYVSAGDMEAAREVFDRMPARNAFVWSSMVTGYFKAGNAEEAQAVFHRIPTRNLVNWNAL 254

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH-----RY 373
           + GY + G S KALE FD+M  E  + PD+ ++  +LSA AQLG +++G  +H      +
Sbjct: 255 IAGYAQIGCSEKALEAFDSMLQE-RVKPDEFTMASLLSACAQLGSLEQGKKVHDFINREH 313

Query: 374 LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
           + K+ F LNG     LIDMY+KCG +  A  +F+ +   + + WN MI+ LA HG  + A
Sbjct: 314 IRKNHFVLNG-----LIDMYAKCGDLVYARYIFDGMRWKNTECWNTMISALASHGRSDEA 368

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493
             L  +ME     P+ IT   +L AC H G V EGL  F  +   + +E  ++HYGC+VD
Sbjct: 369 LHLFFQMEHSGQTPNTITVLAVLGACTHGGFVDEGLRIFNKL-DAYGVEAGVEHYGCLVD 427

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD----SS 549
           +LGRAG ++ A  ++++MP EPN+VIW +LL ACR + +  +   V   +  +     SS
Sbjct: 428 LLGRAGKLKEAYEIVKNMPEEPNEVIWGSLLGACRVHGDAEMSRLVTDEIHRLHSVHASS 487

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
           N + Y++LSN+ A    W  A ++R  M    ++K P CS +EL
Sbjct: 488 NDAEYIMLSNIMAASKRWEQAEQIRRKMARHGVEKTPACSSLEL 531



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 11/196 (5%)

Query: 20  LLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           LL  C  L  + Q   +H  +      KN  +   L+  ++   C  L  +ARYIF    
Sbjct: 289 LLSACAQLGSLEQGKKVHDFINREHIRKNHFVLNGLIDMYAK--CGDLV-YARYIFDGM- 344

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
                K+   WN +I   +      EAL +F  M  +G + +  +   VL AC+  G ++
Sbjct: 345 ---RWKNTECWNTMISALASHGRSDEALHLFFQMEHSGQTPNTITVLAVLGACTHGGFVD 401

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMIDGY 195
           EGL+I   L      + +    CL+ L  R G L+ A ++   M    + V + S++   
Sbjct: 402 EGLRIFNKLDAYGVEAGVEHYGCLVDLLGRAGKLKEAYEIVKNMPEEPNEVIWGSLLGAC 461

Query: 196 VKSGNIESARELFDSM 211
              G+ E +R + D +
Sbjct: 462 RVHGDAEMSRLVTDEI 477


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 173/458 (37%), Positives = 270/458 (58%), Gaps = 10/458 (2%)

Query: 172 FARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWN-----SVLN 226
           + R +F ++   +   + ++I GY   G    +  L++SM  +    +S+         +
Sbjct: 91  YPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACS 150

Query: 227 GYAQLKSGLQFAWQ-IFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWA 285
               +  G Q   Q I       DL   N+++   VKCG +     +FD+M  RDV+SW 
Sbjct: 151 AALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWT 210

Query: 286 NMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLH 345
           ++I  YAK+G ++ A  LFD +P +D+VA  AM+ GY +N    +ALE+F+ MQ    + 
Sbjct: 211 SLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAA-GVK 269

Query: 346 PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF--SLNGKHGVALIDMYSKCGSIENAI 403
            D+ +LV V+SA AQLG       +    E+  F  + N   G ALIDMY+KCGS+E+A 
Sbjct: 270 TDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAY 329

Query: 404 KVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAG 463
           KVFE++E+ +V  +++MI G A+HGL   A +L  EM +  I+P+ +TF G+L AC+HAG
Sbjct: 330 KVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAG 389

Query: 464 LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTL 523
           +V++G   F +M   H + P   HY CMVD+LGRAG +E A NL++ MPM P+  +W  L
Sbjct: 390 MVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGAL 449

Query: 524 LSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583
           L ACR + N ++ +  A HL  ++ +   +Y+LLSN++A  G W+D  +VR +M+ + LK
Sbjct: 450 LGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLK 509

Query: 584 KLPGCSWIE-LEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           K PGCSW+E  +G++HEFF  D S  + R+I   L+++
Sbjct: 510 KNPGCSWVEGKKGIIHEFFAGDMSHPKSREIKQALEDL 547



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 130/459 (28%), Positives = 243/459 (52%), Gaps = 30/459 (6%)

Query: 2   FVSANYNQPCNSTQSTLL-LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP 60
           F+  +  Q     +S L+ +L  C  +N V Q+HA +   G  +   +  KL+ + +   
Sbjct: 26  FIPFSVRQEQKILESRLVSVLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLD 85

Query: 61  CTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKF 120
             P+  + R +F +     E  +PFLW A+I+ Y+      E+++++  M   G+    F
Sbjct: 86  -VPMDPYPRLVFQQV----EYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSF 140

Query: 121 SASLVLKACSRLGLIEEGLQIHGLLRKVA-FGSDLFLQNCLISLYVRCGYLEFARQLFDK 179
           + + +LKACS    +  G Q+H     +  FGSDL++ N LI +YV+CG L    ++FD+
Sbjct: 141 TFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDE 200

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAW 239
           M  RD +S+ S+I  Y K GN+E+A ELFD +P+  +++++W +++ GYAQ  +  + A 
Sbjct: 201 MLDRDVISWTSLIVAYAKVGNMEAASELFDGLPM--KDMVAWTAMVTGYAQ-NARPREAL 257

Query: 240 QIFEKMP----ERDLISWNSMLHGCVKCGKMDDAQALFDKM------PKRDVVSWANMID 289
           ++FE+M     + D ++   ++  C + G    A  + D        P  +VV  + +ID
Sbjct: 258 EVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALID 317

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
            YAK G V+ A ++F+ M +R+V + ++M+ G+  +G +  A+E+FD M  +  + P+  
Sbjct: 318 MYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEM-LKTEIKPNRV 376

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEK-DQFSLNGKHGVALIDMYSKCGSIE---NAIKV 405
           + + VL+A +  G +++G  +   +E+    + +  H   ++D+  + G +E   N +K+
Sbjct: 377 TFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKM 436

Query: 406 FEQIEDGSVDHWNAMINGLAIHG---LGELAFDLLMEME 441
                 G V  W A++    IHG   + ++A   L E+E
Sbjct: 437 MPMNPHGGV--WGALLGACRIHGNPDMAQIAASHLFELE 473


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 210/672 (31%), Positives = 330/672 (49%), Gaps = 91/672 (13%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK------------------ 74
           +HA ++T+GF     +  +L+  +  S   P   +ARY+F K                  
Sbjct: 18  VHAHILTSGFKPFPLIINRLIDHYCKSFNIP---YARYLFDKIPKPDIVAATTMLSAYSA 74

Query: 75  -------YHAFREK----KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSAS 123
                  +  F       +D   +NA+I  +SH  D   AL +F  M   G   D F+ S
Sbjct: 75  AGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFS 134

Query: 124 LVLKACSRLGLIEEGLQ-IHGLLRKVAFGSDLFLQNCLISLYVRCG---------YLEFA 173
            VL A S +   E   Q +H  + K    S   + N L+S YV C           +  A
Sbjct: 135 SVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAA 194

Query: 174 RQLFDKM--GIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQL 231
           R+LFD+   G RD  ++ ++I GYV++ ++ +AREL + M   +   ++WN++++GY   
Sbjct: 195 RKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGM--TDHIAVAWNAMISGYVH- 251

Query: 232 KSGLQFAWQIFEKMP----ERDLISWNSMLHGC--------------------------- 260
           +   + A+ +  +M     + D  ++ S++                              
Sbjct: 252 RGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHF 311

Query: 261 ------------VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
                        +CGK+ +A+ +FDKMP +D+VSW  ++ G     R++ A  +F EMP
Sbjct: 312 VLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMP 371

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            R ++    M+ G  +NG+  + L++F+ M+ E  L P D +    +++ + LG +D G 
Sbjct: 372 VRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLE-GLEPCDYAYAGAIASCSVLGSLDNGQ 430

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            +H  + +     +   G ALI MYS+CG +E A  VF  +       WNAMI  LA HG
Sbjct: 431 QLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHG 490

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
            G  A  L  +M +  I PD ITF  +L+AC+HAGLVKEG   F+ MR  + + PE  HY
Sbjct: 491 HGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHY 550

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
             ++D+L RAG    A+N+ E MP EP   IW  LL+ C  + N+ +G   A  L+ +  
Sbjct: 551 SRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMP 610

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
               +Y+ LSNM+A LG W++  RVR +M+ER +KK PGCSWIE+E +VH F V D    
Sbjct: 611 QQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHP 670

Query: 609 QVRDIYYMLDNM 620
           +V  +Y  L+ +
Sbjct: 671 EVHAVYRYLEQL 682



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 109/266 (40%), Gaps = 56/266 (21%)

Query: 26  TLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPF 85
           +L++  Q+H+++I  G   +  +   L+  +S      L E A  +F          D  
Sbjct: 425 SLDNGQQLHSQIIQLGHDSSLSVGNALITMYSR---CGLVEAADTVFLTM----PYVDSV 477

Query: 86  LWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
            WNA+I   +      +A+ ++  ML   +  D+ +   +L ACS  GL++EG       
Sbjct: 478 SWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEG------- 530

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS-----YNSMIDGYVKSGN 200
                                       R  FD M +   ++     Y+ +ID   ++G 
Sbjct: 531 ----------------------------RHYFDTMRVCYGITPEEDHYSRLIDLLCRAGM 562

Query: 201 IESARELFDSMPIRERNLISWNSVLNG---YAQLKSGLQFAWQIFEKMPERD--LISWNS 255
              A+ + +SMP      I W ++L G   +  ++ G+Q A ++ E MP++D   IS ++
Sbjct: 563 FSEAKNVTESMPFEPGAPI-WEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSN 621

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDV 281
           M       G+ D+   +   M +R V
Sbjct: 622 MY---AALGQWDEVARVRKLMRERGV 644


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 189/606 (31%), Positives = 330/606 (54%), Gaps = 19/606 (3%)

Query: 23  KCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKK 82
           K   L +  Q+H  ++  GF ++  +   L+  +    C  + +  R +F K      ++
Sbjct: 151 KSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGE--CGEI-DCMRRVFDKM----SER 203

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           +   W ++I  Y+     KEA+ +F  M++ G+  +  +   V+ AC++L  ++ G Q+ 
Sbjct: 204 NVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVC 263

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
             + ++    +  + N L+ +Y++CG ++ AR++FD+   ++ V YN+++  YV+ G   
Sbjct: 264 TCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAR 323

Query: 203 SARELFDSM----PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISW----N 254
               +   M    P  +R  I+  S ++  ++L       W     +    L  W    N
Sbjct: 324 EVLAVLGEMLKHGPRPDR--ITMLSAVSACSELDDVSCGKW-CHGYVLRNGLEGWDNVCN 380

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
           ++++  +KCGK + A  +FD+M  +  VSW ++I G+ + G ++ A ++F  MP  D+V+
Sbjct: 381 AIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVS 440

Query: 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
            N M+G  V+     +A+E+F  MQ E  +  D  ++V V SA   LG +D    IH Y+
Sbjct: 441 WNTMIGALVQESMFKEAIELFRVMQSE-GITADKVTMVGVASACGYLGALDLAKWIHGYI 499

Query: 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
           +K     +   G AL+DM+++CG  ++A++VF ++    V  W A I  +A+ G G  A 
Sbjct: 500 KKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAI 559

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
           +L  EM +  I+PD + F  LL A +H GLV++G   F  M+ I+ + P+  HYGCMVD+
Sbjct: 560 ELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDL 619

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           LGRAG +  A +LI  M MEPNDVIW +LL+ACR ++N+++    A+ +  +D   +  +
Sbjct: 620 LGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIH 679

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           VLLSN++A  G W+D  +VR  +KE+   K+PG S IE+ G + EF   D+S  ++  I 
Sbjct: 680 VLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHIE 739

Query: 615 YMLDNM 620
            ML  +
Sbjct: 740 PMLKEI 745



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 125/471 (26%), Positives = 228/471 (48%), Gaps = 60/471 (12%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFA--RYIFFKYHAF 78
            +KCKT+ ++ Q+H+++   G   +    T L++S     CT +  F    Y       F
Sbjct: 40  FKKCKTMTELKQLHSQITKNGLNHHPLSLTNLISS-----CTEMGTFESLEYAQKALELF 94

Query: 79  REKK----DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
            E        ++++++I+ +S      +A+V+F  ++  G   D F+   VL AC++   
Sbjct: 95  IEDNGIMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAA 154

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           + EG Q+HG + K+ F  D+F++N LI  Y  CG ++  R++FDKM  R+ VS+ S+I G
Sbjct: 155 LTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGG 214

Query: 195 YVKSGNIESARELFDSM---PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL- 250
           Y K G  + A  LF  M    IR  N ++   V++  A+L+  LQ   Q+   + E +L 
Sbjct: 215 YAKRGCYKEAVSLFFEMVEVGIRP-NSVTMVGVISACAKLQD-LQLGEQVCTCIGELELE 272

Query: 251 ---ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
              +  N+++   +KCG +D A+ +FD+   +++V +                       
Sbjct: 273 VNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLY----------------------- 309

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
                   N +M  YVR G + + L +   M  +    PD  +++  +SA ++L  +  G
Sbjct: 310 --------NTIMSNYVRQGLAREVLAVLGEM-LKHGPRPDRITMLSAVSACSELDDVSCG 360

Query: 368 VAIHRYLEKDQFSLNGKHGV--ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
              H Y+ ++   L G   V  A+I+MY KCG  E A +VF+++ + +   WN++I G  
Sbjct: 361 KWCHGYVLRN--GLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFV 418

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
            +G  E A+ +   M     + D +++  ++ A     + KE +  F +M+
Sbjct: 419 RNGDMESAWKIFSAMP----DSDLVSWNTMIGALVQESMFKEAIELFRVMQ 465


>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 552

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 183/527 (34%), Positives = 300/527 (56%), Gaps = 8/527 (1%)

Query: 75  YHAFREKKDPFL--WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL 132
           +  F + + P L  WN +I   S    P +A+  +  M   G+     +   + K+C+R+
Sbjct: 26  HFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARV 85

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
             + +G  +     K+ F S  F+ N LI +YV  G L  A+++FD M  RD VS+NS+I
Sbjct: 86  SDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSII 145

Query: 193 DGYVKSGNIESARELFDSMP---IRERNLISWNSVLNG--YAQLKSGLQFAWQIFEKMPE 247
            GY +    +   +LF  M    +R  ++    ++      ++ + G      I E    
Sbjct: 146 CGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVV 205

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
            DL   N+++    + G +D A  +F +M ++++VSW  MI GYAK+G +  A++LF+EM
Sbjct: 206 VDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEM 265

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
           P RDV++  +M+ GY       +A+++F  M   + + PD+ ++   LSA A LG +D G
Sbjct: 266 PSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSM-VKPDEITVATALSACAHLGSLDAG 324

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
            A+H Y+ K     +   G +LIDMY KCG +E A++VF  ++      W ++I+GLA++
Sbjct: 325 EAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVN 384

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           G  E A ++  +M +  I P   TF G+L ACAH GLV +G+  F+ M   ++L PE++H
Sbjct: 385 GFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKH 444

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
           YGC+VD+L R+G+++ A N I+ MP+ P+ VIWR LLSAC+ + NL + E V+K L+ +D
Sbjct: 445 YGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLD 504

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
            SN+ +YVL S+ +AG   W+D  ++R +M+  NL+K    S IE+ 
Sbjct: 505 PSNNGNYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSIEVR 551


>gi|242048094|ref|XP_002461793.1| hypothetical protein SORBIDRAFT_02g008110 [Sorghum bicolor]
 gi|241925170|gb|EER98314.1| hypothetical protein SORBIDRAFT_02g008110 [Sorghum bicolor]
          Length = 601

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 185/531 (34%), Positives = 289/531 (54%), Gaps = 49/531 (9%)

Query: 110 MLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY 169
           M   GVS + F+ + +L+AC  L  +     +HG + +  FGSD+ +QN L+++Y +CG 
Sbjct: 103 MRAAGVSPNGFTFTFLLRACESLRRLPLCRCVHGQIVRCGFGSDVVVQNALLNVYYKCGD 162

Query: 170 ---LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLN 226
              +  AR++FD M  RD VS+NS++  Y+ SG+   A ELF+++P  ERN++SWN+++ 
Sbjct: 163 PGDVGVARKVFDGMADRDVVSWNSIVGVYMSSGDTTGAMELFEAIP--ERNVVSWNTIVA 220

Query: 227 GYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN 286
            + +    +  A  +F++MP RD ISWN M+ G    G ++ A+ LFD M ++DVVSW  
Sbjct: 221 AFTR-AGDMVSAHAVFDRMPIRDAISWNLMISGYAGSGNVESARTLFDLMDRKDVVSWTA 279

Query: 287 MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP 346
           M+  YAK+G +D AR LFD+MP +++V+ NAM+ GY  N    +AL  F  M  E    P
Sbjct: 280 MVSAYAKIGDLDSARVLFDQMPDKNLVSWNAMITGYNHNSRYDEALRTFQQMMLEGRFMP 339

Query: 347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVF 406
           D+A+LV V+SA AQLG ++    I  Y+ K    +    G ALIDM++KCG +  A   F
Sbjct: 340 DEATLVSVVSACAQLGSVEYCNWISSYISKSNTHITVALGNALIDMFAKCGDVGRARLAF 399

Query: 407 EQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVK 466
           ++++   V  W  MI+G A +G    A  +  ++ R  +  DD  F   L ACAH GL++
Sbjct: 400 DKMKTRCVITWTTMISGFAYNGQFREALLIYSDICREGVTLDDTIFIAALAACAHGGLLQ 459

Query: 467 EGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           EG   F+ M   + + P ++HYGC+VD+LGRA                            
Sbjct: 460 EGWSIFKQMVEHYGIVPRMEHYGCIVDLLGRA---------------------------- 491

Query: 527 CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLP 586
                   + E V+  ++ ++  NSS  VL+SN  A  G W      R  +++R ++K P
Sbjct: 492 -------ELTEYVSARVVEIEPFNSSYQVLVSNCSALEGRWGSVMDARKTLRDRGVEKTP 544

Query: 587 GCSWIELEGVVHEFFVRD---KSRLQVRD-IYYMLDNMWTPDSVATSCTHY 633
           G S I++   VHEF  +D   K R +  D + + +D      ++ TSC  +
Sbjct: 545 GSSLIQVGNEVHEFLAKDTRHKKRKEKMDCVLFKIDEA----TIDTSCVLF 591


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 184/546 (33%), Positives = 293/546 (53%), Gaps = 37/546 (6%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           ++ +  LWN ++  Y    D  ++  +F  M   G+  ++F+   +L+ C+  G IE G 
Sbjct: 307 DRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGE 366

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           QIH L  K  F SD+++   LI +Y + G L+ AR++ + +  RD VS+ SMI GYV+  
Sbjct: 367 QIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHD 426

Query: 200 NIESARELFDSMP---IRERN--LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN 254
             E A   F  M    +   N  L S  S   G   ++ GLQ   +++      D+  WN
Sbjct: 427 FCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWN 486

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
           ++                               ++ YA+ GR + A  LF E+  +D + 
Sbjct: 487 TL-------------------------------VNLYARCGRSEEAFSLFREIEHKDEIT 515

Query: 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
            N ++ G+ ++    +AL +F  M  +     +  + +  +SA+A L  I +G  +H   
Sbjct: 516 WNGLISGFGQSRLYKQALMVFMKMG-QAGAKYNVFTFISAISALANLADIKQGKQVHGRA 574

Query: 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
            K   +   +   ALI +Y KCGSIE+A  +F ++   +   WN +I   + HG G  A 
Sbjct: 575 VKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEAL 634

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
           DL  +M++  ++P+D+TF G+L AC+H GLV+EGL  F+ M  ++ L P   HY C+VDI
Sbjct: 635 DLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDI 694

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           LGRAG ++ AR  +++MP+  N +IWRTLLSAC+ ++N+ +GE  AKHL+ ++  +S+SY
Sbjct: 695 LGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASY 754

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           VLLSN +A  G W +  +VR MMK+R ++K PG SWIE++  VH FFV D+       IY
Sbjct: 755 VLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIY 814

Query: 615 YMLDNM 620
             L  +
Sbjct: 815 KFLSEL 820



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 131/503 (26%), Positives = 227/503 (45%), Gaps = 48/503 (9%)

Query: 30  VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNA 89
           V +IHA  +  G   +  +   L+  ++ +    L   AR +F +  +    +D   W A
Sbjct: 62  VLEIHATSVVRGLGADRLIGNLLIDLYAKNG---LVWQARQVFKELSS----RDHVSWVA 114

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA 149
           ++  Y+     KEA  ++  M    V    +  S VL AC++  L  +G  IH  + K A
Sbjct: 115 MLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQA 174

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD 209
           F S+ F+ N LI+LY+  G  + A ++F  M   D V++N++I G+ + G+ E A ++FD
Sbjct: 175 FCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFD 234

Query: 210 SMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDA 269
            M +                   SGL+            D ++  S+L  C   G +   
Sbjct: 235 EMQL-------------------SGLR-----------PDCVTVASLLAACASVGDLQKG 264

Query: 270 QALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
           + L   + K     D ++  +++D Y K G ++ A  +F+   + +VV  N M+  Y + 
Sbjct: 265 KQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQI 324

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
               K+ EIF  MQ    +HP+  +   +L      G I+ G  IH    K+ F  +   
Sbjct: 325 SDLAKSFEIFGQMQAT-GIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYV 383

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
              LIDMYSK G ++ A K+ E +E   V  W +MI G   H   E A     EM+   +
Sbjct: 384 SGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGV 443

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH--KLEPELQHYGCMVDILGRAGHIEA 503
            PD+I      +ACA    +++GL   ++  R++      ++  +  +V++  R G  E 
Sbjct: 444 WPDNIGLASAASACAGIKAMRQGL---QIHARVYVSGYAADISIWNTLVNLYARCGRSEE 500

Query: 504 ARNLIEDMPMEPNDVIWRTLLSA 526
           A +L  ++    +++ W  L+S 
Sbjct: 501 AFSLFREIE-HKDEITWNGLISG 522



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 153/348 (43%), Gaps = 66/348 (18%)

Query: 25  KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE--KK 82
           K +    QIHAR+  +G+  +  +   LV  ++   C    E        +  FRE   K
Sbjct: 461 KAMRQGLQIHARVYVSGYAADISIWNTLVNLYAR--CGRSEE-------AFSLFREIEHK 511

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           D   WN +I  +      K+AL++F  M   G   + F+    + A + L  I++G Q+H
Sbjct: 512 DEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVH 571

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
           G   K    S+  + N LISLY +CG +E A+ +F +M +R+ VS+N++I    + G   
Sbjct: 572 GRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGL 631

Query: 203 SARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVK 262
            A +LFD M                    + GL+            + +++  +L  C  
Sbjct: 632 EALDLFDQMK-------------------QEGLK-----------PNDVTFIGVLAACSH 661

Query: 263 CGKMDDAQALFDKM-------PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
            G +++  + F  M       P  D   +A ++D   + G++D ARR  DEMP    +  
Sbjct: 662 VGLVEEGLSYFKSMSNVYGLNPIPD--HYACVVDILGRAGQLDRARRFVDEMP----ITA 715

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCE-------LYLHPDDASLVIVLS 356
           NAM+   +     + A ++  N++         L L P D++  ++LS
Sbjct: 716 NAMIWRTL-----LSACKVHKNIEIGELAAKHLLELEPHDSASYVLLS 758


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 218/716 (30%), Positives = 350/716 (48%), Gaps = 107/716 (14%)

Query: 5   ANYNQPCNSTQSTLLLLRKC-KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTP 63
             +NQ      + L LLR+  K L  V   HA++IT     +  + TKLV ++S      
Sbjct: 22  GQFNQLPTIIHNFLSLLRESSKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSL- 80

Query: 64  LTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSAS 123
             E ARY+F ++  F+ K    L NA++  Y      +E L +F LM    + VD  S +
Sbjct: 81  --EAARYVFDQF--FQPKG--LLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCT 134

Query: 124 LVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183
             LKAC+     E G++I     +     + F+ + +IS  V+ G +  A+++FD M  +
Sbjct: 135 FALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNK 194

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSM--------PIRERNLISWNSVLNGYAQLKSG- 234
           D V +NS+I GYV++G  + A +LF  M        PI   +LI       G   LK G 
Sbjct: 195 DVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQ---ACGGIGNLKLGK 251

Query: 235 ------------------------------LQFAWQIFEKMPERDLISWNSMLHGCVKCG 264
                                         ++ A  +F KMP R+L+SWN+M+ GCV+ G
Sbjct: 252 CMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNG 311

Query: 265 KMDDAQALFDKMPKR----DVVSWANMIDG------------------------------ 290
            + ++  LF ++ +     D+ +  +++ G                              
Sbjct: 312 LVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRSFESNLILSTA 371

Query: 291 ----YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP 346
               Y+K G +  A  +F+ M  R+V+   AM+ G  +NG++  AL +F  MQ E  +  
Sbjct: 372 IVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQ-EEGIAA 430

Query: 347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVF 406
           +  + V ++ + A LG + +G +IH +L +  F+ +  +  AL+DMY+KCG I  A ++F
Sbjct: 431 NSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIF 490

Query: 407 EQIEDGSVDH----WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
                GS+      WN+MI G  +HG G  A  +  +M    ++P+  TF  LL+AC+H+
Sbjct: 491 SH---GSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHS 547

Query: 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRT 522
            LV++G+  F  M R H + P  +HY C+VD+L RAG  E A+ LIE MP +P   +   
Sbjct: 548 RLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEA 607

Query: 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
           LLS CR ++N+N+G   +  L+ +D+ N   Y++LSN++A    W+    +R +M+ R L
Sbjct: 608 LLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGL 667

Query: 583 KKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM--------WTPDSVATSC 630
           KK PG S +E    VH FF  D S     +IY+ L+++        + PD   TSC
Sbjct: 668 KKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLESLRSAVETSGYVPD---TSC 720


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 200/659 (30%), Positives = 327/659 (49%), Gaps = 84/659 (12%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           IH ++++ G   N  L   L+  + S     L + A+ +F          D  LWN ++ 
Sbjct: 217 IHQKIVSLGLQNNITLCKSLINLYFS---CHLFQSAKLVF---QTIENPLDITLWNGLMA 270

Query: 93  TYSHGLDPKEALVMFCLMLD-NGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
             +      E L +F  +L    +  D F+   VLKACS LG +  G  +H  + K  F 
Sbjct: 271 ACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFA 330

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
            D+ + +  + +Y +C   E A +LFD+M  RD  S+N++I  Y + G  E A ELF+ M
Sbjct: 331 MDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEM 390

Query: 212 PIR--ERNLISWNSVLNGYAQL--------------KSG--------------------L 235
            +   + + ++  +V++  A+L              +SG                    L
Sbjct: 391 KVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCL 450

Query: 236 QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR---------------- 279
           + A ++FE++  ++++SWNSM+ G    G       LF +M +                 
Sbjct: 451 EMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMAC 510

Query: 280 -----------------------DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
                                  D+   +++ID Y K G +  A  +F  MPK +VV+ N
Sbjct: 511 SRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWN 570

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
            M+ GYV+ G  ++AL IF +M+ +  + PD  +   VL A +QL  ++KG  IH ++ +
Sbjct: 571 VMISGYVKVGSYLEALVIFTDMR-KAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIE 629

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
            +  +N     AL+DMY+KCG+++ A+ +F Q+ +     W +MI     HG    A  L
Sbjct: 630 SKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKL 689

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
             +M++   +PD +TF  +L+AC+HAGLV EG   F  M   +  +P ++HY C++D+LG
Sbjct: 690 FEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLG 749

Query: 497 RAGHIEAARNLIEDMPMEPNDV-IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           R G +  A  +++  P    DV +  TL SAC  ++ L++GE + + LI  D  + S+Y+
Sbjct: 750 RVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYI 809

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           +LSNM+A +  W++ R+VR  +KE  LKK PGCSWIE+   +H F V DKS  Q   IY
Sbjct: 810 ILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHPFVVEDKSHPQADMIY 868


>gi|449443185|ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
 gi|449525900|ref|XP_004169954.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
          Length = 562

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 188/580 (32%), Positives = 316/580 (54%), Gaps = 26/580 (4%)

Query: 16  STLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           + +  L KCKT+ ++ QIH+ MITT  +KN    ++L+   ++S    + E+AR +F + 
Sbjct: 7   TVMSFLEKCKTMKELKQIHSLMITTSVVKNIIPCSRLIDFCANSELGDI-EYARTVFDQI 65

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
           +    ++  ++WN++IK Y +G D   AL M+  M   G S D F+   VLK CS + L+
Sbjct: 66  N----QRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLL 121

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
             G  +H  + K  F  D++  +CL+++YV CG L    ++F+ +   + V++ S+I G+
Sbjct: 122 VYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGF 181

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
           V +   + A  LF  M   E   +  N +    A   +              RD I    
Sbjct: 182 VNNDQPKEALRLFKDM---ENEGVEPNEITMTTALAAA-----------ARCRD-IHTGK 226

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           ++H  ++    D     FD     +V+    ++D YAK G++  AR LFD+MP+R++V  
Sbjct: 227 LVHDRLRQLGFDP----FDTNSCFNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVW 282

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           N+M+  Y + G   +AL +F +M+   ++ P+ A+ + V+SA   +G    G ++H    
Sbjct: 283 NSMISAYSQYGRGAEALRLFVDMEMAGFV-PNKATFLSVISACTHMGFRSTGRSLHARAL 341

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           +  F      G AL+DMY+K G  + A+K+F ++    V  W  MI+GLAI G G+ A +
Sbjct: 342 RASFHEFVAIGTALMDMYAKAGDADTALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALN 401

Query: 436 LLMEMER-LSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
           +   ME    + PD IT+  +L AC+H GLV+EG   F  M  ++ +EP ++HYGCM+D+
Sbjct: 402 VFRRMEEEAEVAPDQITYIAVLWACSHLGLVEEGQKQFTSMTEVYGIEPTMEHYGCMIDL 461

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           L RAGH + A  L+  MP +PN  I  ++L+ C  Y N+ +   V  H++ +++S+S  Y
Sbjct: 462 LSRAGHSKEAEELLMKMPTQPNATILSSILNGCEMYGNVGLANRVKSHIVELENSSSGVY 521

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           VLLSN+ A    W + +  R M+K +N+ K  G S++E++
Sbjct: 522 VLLSNIHAKACNWQEMKLARDMLKHKNIGKTLGNSFVEIK 561


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 179/518 (34%), Positives = 275/518 (53%), Gaps = 25/518 (4%)

Query: 121 SASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
           S + + +  +R   I+ G Q H  +       + FL   ++++Y   G L+ A  +FD++
Sbjct: 79  SYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRI 138

Query: 181 GIRDSVSYNSMIDGYVKSGNIESARELFD---------------SMPIRERNLISWNSVL 225
               S+ YNS+I  Y + G         +               ++P   ++    + V 
Sbjct: 139 DNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVC 198

Query: 226 NGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWA 285
            G      GL+          E D     S++   VKCG + DA+ LFDKM  RD+ SW 
Sbjct: 199 MGRCVHGQGLRVGL-------EGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWN 251

Query: 286 NMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM-QCELYL 344
            +I GY K G + +A  LF+ M  R++V+  AM+ GY +NG++ +AL +FD M Q    +
Sbjct: 252 ALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEM 311

Query: 345 HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIK 404
            P+  ++V VL A AQ   +++G  IH +       LN     AL  MY+KC S+  A  
Sbjct: 312 KPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARC 371

Query: 405 VFEQIEDGSVD--HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
            F+ I     +   WN MI   A HG G  A  +   M R  ++PD +TF GLL+ C+H+
Sbjct: 372 CFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHS 431

Query: 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRT 522
           GL+  GL  F  M  IH +EP ++HY C+VD+LGRAG +  A+ LI  MPM+    +W  
Sbjct: 432 GLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGA 491

Query: 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
           LL+ACR++ NL + E  A+ L  ++  NS +YVLLSN++A  GMW + +++R+++K + +
Sbjct: 492 LLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGM 551

Query: 583 KKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           KK PGCSWIE+ G  H F   DKS  Q ++IY  L+ +
Sbjct: 552 KKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEAL 589



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 129/479 (26%), Positives = 226/479 (47%), Gaps = 54/479 (11%)

Query: 31  NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAI 90
            Q HA+++  G   N  L  K+VA ++SS      + A  +F +     +     L+N+I
Sbjct: 97  QQAHAQIVLHGLQPNAFLAAKMVAMYASSGDL---DSAVVVFDRI----DNPSSLLYNSI 149

Query: 91  IKTYS-HGLDPKEA--LVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRK 147
           I+ Y+ HG        L  +  M   G+  D F+   VLK+C+ L  +  G  +HG   +
Sbjct: 150 IRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLR 209

Query: 148 VAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAREL 207
           V    D ++   LI +YV+CG +  AR+LFDKM +RD  S+N++I GY+K G I  A +L
Sbjct: 210 VGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDL 269

Query: 208 FDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE------RDLISWNSMLHGCV 261
           F+ M    RN++SW ++++GY Q     Q A  +F++M +       + ++  S+L  C 
Sbjct: 270 FERM--EHRNIVSWTAMISGYTQNGFAEQ-ALGLFDEMLQDGSEMKPNWVTIVSVLPACA 326

Query: 262 KCGKMDDAQALFD-------KMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK--RDV 312
           +   ++  + + D        +      + A M   YAK   +  AR  FD + +  +++
Sbjct: 327 QSAALERGRRIHDFANGIGLHLNSSVQTALAGM---YAKCYSLVEARCCFDMIAQNGKNL 383

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV---- 368
           +A N M+  Y  +G  ++A+ IF+NM     + PD  + + +LS  +  G ID G+    
Sbjct: 384 IAWNTMITAYASHGCGVEAVSIFENM-LRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFN 442

Query: 369 ---AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGL 424
               IH    + +      H   ++D+  + G +  A ++  Q+        W A++   
Sbjct: 443 DMGTIHSVEPRVE------HYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAAC 496

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGLVKE-----GLLCFELMRR 477
             H   E+A   L       +EPD+   +  L N  A AG+ +E      LL ++ M++
Sbjct: 497 RSHRNLEIA--ELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKK 553



 Score = 43.1 bits (100), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 109/271 (40%), Gaps = 21/271 (7%)

Query: 346 PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKV 405
           P  +S   +   + +   I  G   H  +       N      ++ MY+  G +++A+ V
Sbjct: 75  PHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVV 134

Query: 406 FEQIEDGSVDHWNAMINGLAIHGLGELAFDLL---MEMERLSIEPDDITFTGLLNACAHA 462
           F++I++ S   +N++I     HG        L     M  L +  D+ T   +L +CA  
Sbjct: 135 FDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADL 194

Query: 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRT 522
             V  G        R+  LE +      ++D+  + G I  AR L + M +  +   W  
Sbjct: 195 SRVCMGRCVHGQGLRV-GLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVR-DMASWNA 252

Query: 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL-----SNMFA--GLGMWNDARRVRS 575
           L++       + V E + +    M+  N  S+  +      N FA   LG++++  +  S
Sbjct: 253 LIAGYMKEGEIGVAEDLFER---MEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGS 309

Query: 576 MMKER---NLKKLPGCSW---IELEGVVHEF 600
            MK      +  LP C+    +E    +H+F
Sbjct: 310 EMKPNWVTIVSVLPACAQSAALERGRRIHDF 340


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 212/709 (29%), Positives = 346/709 (48%), Gaps = 94/709 (13%)

Query: 2   FVSANYNQPCNSTQ-STLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP 60
           F+S     P N  +    LLL +C +L ++ QI   +   G  +     TKLV+ F    
Sbjct: 24  FLSERNYIPANVYEHPAALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRY- 82

Query: 61  CTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKF 120
              + E AR +F       + K   L++ ++K ++   D  +AL  F  M  + V    +
Sbjct: 83  -GSVDEAAR-VFEPI----DSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVY 136

Query: 121 SASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
           + + +LK C     +  G +IHGLL K  F  DLF    L ++Y +C  +  AR++FD+M
Sbjct: 137 NFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRM 196

Query: 181 GIRDSVSYNSMIDGYVKSGNIESARELFDSM-----------------PIRERNLISWNS 223
             RD VS+N+++ GY ++G    A E+  SM                  +    LIS   
Sbjct: 197 PERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGK 256

Query: 224 VLNGYAQLKSG--------------------LQFAWQIFEKMPERDLISWNSMLHGCVKC 263
            ++GYA ++SG                    L+ A Q+F+ M ER+++SWNSM+   V+ 
Sbjct: 257 EIHGYA-MRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQN 315

Query: 264 GKMDDAQALFDKM------PK---------------------------------RDVVSW 284
               +A  +F KM      P                                  R+V   
Sbjct: 316 ENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVV 375

Query: 285 ANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYL 344
            ++I  Y K   VD A  +F ++  R +V+ NAM+ G+ +NG  + AL  F  M+    +
Sbjct: 376 NSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRT-V 434

Query: 345 HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIK 404
            PD  + V V++AIA+L        IH  + +     N     AL+DMY+KCG+I  A  
Sbjct: 435 KPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARL 494

Query: 405 VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL 464
           +F+ + +  V  WNAMI+G   HG G+ A +L  EM++ +I+P+ +TF  +++AC+H+GL
Sbjct: 495 IFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGL 554

Query: 465 VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
           V+ GL CF +M+  + +E  + HYG MVD+LGRAG +  A + I  MP++P   ++  +L
Sbjct: 555 VEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAML 614

Query: 525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKK 584
            AC+ ++N+N  E  A+ L  ++  +   +VLL+N++    MW    +VR  M  + L+K
Sbjct: 615 GACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRK 674

Query: 585 LPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM--------WTPDS 625
            PGCS +E++  VH FF    +    + IY  L+ +        + PD+
Sbjct: 675 TPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDT 723


>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
          Length = 421

 Score =  319 bits (817), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 162/406 (39%), Positives = 257/406 (63%), Gaps = 6/406 (1%)

Query: 215 ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFD 274
           E+N++ W S++NGY  L   L  A + F+  PERD++ WN+M+ G ++ G M +A++LFD
Sbjct: 3   EKNVVLWTSMINGYL-LNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLFD 61

Query: 275 KMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEI 334
           +MP RDV+SW  +++GYA +G ++   R+FD+MP+R+V + N ++ GY +NG   + L  
Sbjct: 62  QMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGS 121

Query: 335 FDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK---DQFSLNGKHGVALID 391
           F  M  E  + P+DA++ +VLSA A+LG  D G  +H+Y E    ++  +N K+  ALID
Sbjct: 122 FKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKN--ALID 179

Query: 392 MYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDIT 451
           MY KCG+IE A++VF+ I+   +  WN MINGLA HG G  A +L  EM+   I PD +T
Sbjct: 180 MYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVT 239

Query: 452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM 511
           F G+L AC H GLV++GL  F  M     + PE++H GC+VD+L RAG +  A   I  M
Sbjct: 240 FVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKM 299

Query: 512 PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDAR 571
           P++ + VIW TLL A + Y+ +++GE   + LI ++  N +++V+LSN++   G ++DA 
Sbjct: 300 PVKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGDAGRFDDAA 359

Query: 572 RVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           R++  M++   KK  G SWIE +  + +F+   +   +  ++  +L
Sbjct: 360 RLKVAMRDTGFKKEAGVSWIETDDGLVKFYSSGEKHPRTEELQRIL 405



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 163/336 (48%), Gaps = 52/336 (15%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           ++ L   +I+ Y+    L  AR+ FD    RD V +N+MI GY++ GN+  AR LFD MP
Sbjct: 5   NVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLFDQMP 64

Query: 213 IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
            R+  ++SWN+VL GYA +   ++   ++F+ MPER++ SWN ++ G  + G++ +    
Sbjct: 65  CRD--VMSWNTVLEGYANI-GDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGS 121

Query: 273 FDKM-----------------------------------------PKRDVVSWANMIDGY 291
           F +M                                          K DV     +ID Y
Sbjct: 122 FKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMY 181

Query: 292 AKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASL 351
            K G ++IA  +F  + +RD+++ N M+ G   +G+  +AL +F  M+    + PD  + 
Sbjct: 182 GKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNS-GISPDKVTF 240

Query: 352 VIVLSAIAQLGHIDKGVAIHRYLEKDQFSL--NGKHGVALIDMYSKCGSIENAIKVFEQI 409
           V VL A   +G ++ G+A    +  D FS+    +H   ++D+ S+ G +  A++   ++
Sbjct: 241 VGVLCACKHMGLVEDGLAYFNSMFTD-FSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKM 299

Query: 410 E-DGSVDHWNAMINGLAIH---GLGELAFDLLMEME 441
                   W  ++    ++    +GE+A + L+++E
Sbjct: 300 PVKADAVIWATLLGASKVYKKVDIGEVALEELIKLE 335



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 116/245 (47%), Gaps = 23/245 (9%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV-DKFSASLVLKACSRLGLIEEGL 139
           +++ F WN +IK Y+      E L  F  M+D G  V +  + +LVL AC++LG  + G 
Sbjct: 96  ERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGK 155

Query: 140 QIHGLLRKVAFGS-DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
            +H     + +   D+ ++N LI +Y +CG +E A ++F  +  RD +S+N+MI+G    
Sbjct: 156 WVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAH 215

Query: 199 GNIESARELFDSMPIR--ERNLISWNSVLNGYAQL---KSGLQFAWQIFEK---MPERDL 250
           G+   A  LF  M       + +++  VL     +   + GL +   +F     MPE + 
Sbjct: 216 GHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEH 275

Query: 251 ISWNSMLHGCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRLF 304
                   GCV     + G +  A    +KMP K D V WA ++       +VDI     
Sbjct: 276 C-------GCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVAL 328

Query: 305 DEMPK 309
           +E+ K
Sbjct: 329 EELIK 333



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 62/115 (53%), Gaps = 2/115 (1%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           +++D   WN +I   +      EAL +F  M ++G+S DK +   VL AC  +GL+E+GL
Sbjct: 198 KRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGL 257

Query: 140 Q-IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMI 192
              + +    +   ++    C++ L  R G+L  A +  +KM ++ D+V + +++
Sbjct: 258 AYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLL 312


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  319 bits (817), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 189/612 (30%), Positives = 321/612 (52%), Gaps = 76/612 (12%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           K D FLWN +IK ++      EA+  +  M+  GV  D F+   V+K+ + +  +EEG +
Sbjct: 92  KADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAGISSLEEGKK 151

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           IH ++ K+ F SD+++ N LISLY++ G    A ++F++M  RD VS+NSMI GY+  G+
Sbjct: 152 IHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALGD 211

Query: 201 IESARELFDSM----------------------------------PIRER----NLISWN 222
             S+  LF  M                                   +R R    +++   
Sbjct: 212 GFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMT 271

Query: 223 SVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR--- 279
           S+L+ Y++    + +A +IF  M +R++++WN M+    + G++ DA   F KM ++   
Sbjct: 272 SILDMYSKYGE-VSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGL 330

Query: 280 --DVVSWANM-------------------------------IDGYAKLGRVDIARRLFDE 306
             DV++  N+                               ID Y + G++  A  +FD 
Sbjct: 331 QPDVITSINLLPASAILEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDR 390

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           M +++V++ N+++  YV+NG +  ALE+F  +  +  L PD  ++  +L A A+   + +
Sbjct: 391 MAEKNVISWNSIIAAYVQNGKNYSALELFQELW-DSSLVPDSTTIASILPAYAESLSLSE 449

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G  IH Y+ K ++  N     +L+ MY+ CG +E+A K F  I    V  WN++I   A+
Sbjct: 450 GREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAV 509

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           HG G ++  L  EM    + P+  TF  LL AC+ +G+V EG   FE M+R + ++P ++
Sbjct: 510 HGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIE 569

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HYGCM+D++GR G+  AA+  +E+MP  P   IW +LL+A RN++++ + E  A+ +  M
Sbjct: 570 HYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNHKDITIAEFAAEQIFKM 629

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           +  N+  YVLL NM+A  G W D  R++ +M+ + + +    S +E +G  H F   D+S
Sbjct: 630 EHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMESKGISRTSSRSTVEAKGKSHVFTNGDRS 689

Query: 607 RLQVRDIYYMLD 618
            +    IY +LD
Sbjct: 690 HVATNKIYEVLD 701



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 117/440 (26%), Positives = 188/440 (42%), Gaps = 96/440 (21%)

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM------------PIRERN 217
           +E A QLFD+M   D+  +N MI G+   G    A + +  M            P   ++
Sbjct: 80  MEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKS 139

Query: 218 LISWNS---------------------VLNGYAQLKSGLQFAW---QIFEKMPERDLISW 253
           +   +S                     V N    L   L  AW   ++FE+MPERD++SW
Sbjct: 140 VAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSW 199

Query: 254 NSMLHGCVKCGKMDDAQALFDKM------PKR---------------------------- 279
           NSM+ G +  G    +  LF +M      P R                            
Sbjct: 200 NSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVR 259

Query: 280 ------DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE 333
                 DV+   +++D Y+K G V  A R+F+ M +R++VA N M+G Y RNG    A  
Sbjct: 260 SRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFL 319

Query: 334 IFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMY 393
            F  M  +  L PD  + + +L A A L    +G  IH Y  +  F  +     ALIDMY
Sbjct: 320 CFQKMSEQNGLQPDVITSINLLPASAIL----EGRTIHGYAMRRGFLPHMVLETALIDMY 375

Query: 394 SKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
            +CG +++A  +F+++ + +V  WN++I     +G    A +L  E+   S+ PD  T  
Sbjct: 376 GECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIA 435

Query: 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG------CMVDILGRAGHIEAARNL 507
            +L A A +  + EG       R IH    + +++        +V +    G +E AR  
Sbjct: 436 SILPAYAESLSLSEG-------REIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKC 488

Query: 508 IEDMPMEPNDVI-WRTLLSA 526
              + ++  DV+ W +++ A
Sbjct: 489 FNHILLK--DVVSWNSIIMA 506



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 165/382 (43%), Gaps = 69/382 (18%)

Query: 225 LNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM----PKRD 280
           L G+A  +  ++ A Q+F++M + D   WN M+ G   CG   +A   + +M     K D
Sbjct: 71  LRGFADSRL-MEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKAD 129

Query: 281 VVSWA-----------------------------------NMIDGYAKLGRVDIARRLFD 305
             ++                                    ++I  Y KLG    A ++F+
Sbjct: 130 TFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFE 189

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHI 364
           EMP+RD+V+ N+M+ GY+  G    +L +F  M +C     PD  S +  L A + +   
Sbjct: 190 EMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCG--FKPDRFSTMSALGACSHVYSP 247

Query: 365 DKGVAIHRYLEKDQFSLNGKHGV-ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
             G  IH +  + +        + +++DMYSK G +  A ++F  +   ++  WN MI  
Sbjct: 248 KMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGC 307

Query: 424 LAIHGLGELAFDLLMEM-ERLSIEPDDITFTGLLNACA-------HAGLVKEGLLCFELM 475
            A +G    AF    +M E+  ++PD IT   LL A A       H   ++ G L     
Sbjct: 308 YARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAILEGRTIHGYAMRRGFL----- 362

Query: 476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA----CRNYE 531
                  P +     ++D+ G  G +++A  + + M  E N + W ++++A     +NY 
Sbjct: 363 -------PHMVLETALIDMYGECGQLKSAEVIFDRMA-EKNVISWNSIIAAYVQNGKNYS 414

Query: 532 NLNVGEPVAKHLIGMDSSNSSS 553
            L + + +    +  DS+  +S
Sbjct: 415 ALELFQELWDSSLVPDSTTIAS 436


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 201/680 (29%), Positives = 352/680 (51%), Gaps = 86/680 (12%)

Query: 17  TLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +++LL  C +  ++ QI   +I  GF       TK+++ F        +E AR   F++ 
Sbjct: 50  SVVLLENCTSKKELYQILPFIIKNGFYNEHLFQTKVISLFCKFGSN--SEAAR--VFEH- 104

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
              E K   L++ ++K Y+      +AL  F  M+ + V +     + +L+ C     ++
Sbjct: 105 --VELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLK 162

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           +G +IHGL+    F S+LF+   ++SLY +C  ++ A ++F++M  +D VS+ +++ GY 
Sbjct: 163 KGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYA 222

Query: 197 KSGNIESARELFDSM-----------------PIRERNLISWNSVLNGYAQLKSGLQ--- 236
           ++G+ + A +L   M                  + +   +     ++GYA  +SG +   
Sbjct: 223 QNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYA-FRSGFESLV 281

Query: 237 -----------------FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM--- 276
                             A  +F+ M  + ++SWN+M+ GC + G+ ++A A F KM   
Sbjct: 282 NVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDE 341

Query: 277 ---PKR---------------------------------DVVSWANMIDGYAKLGRVDIA 300
              P R                                 +V    ++I  Y+K  RVDIA
Sbjct: 342 GEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIA 401

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
             +F+ + K +V   NAM+ GY +NG   +AL +F  MQ +  +  D  +LV V++A+A 
Sbjct: 402 ASIFNNLEKTNVT-WNAMILGYAQNGCVKEALNLFCMMQSQ-GIKLDCFTLVGVITALAD 459

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
                +   IH    +     N     AL+DMY+KCG+I+ A K+F+ +++  V  WNAM
Sbjct: 460 FSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAM 519

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           I+G   HG+G+   DL  EM++ +++P+DITF  +++AC+H+G V+EGLL F+ M+  + 
Sbjct: 520 IDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYY 579

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           LEP + HY  MVD+LGRAG ++ A N I++MP++P   +   +L AC+ ++N+ +GE  A
Sbjct: 580 LEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAA 639

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
           + L  +D      +VLL+N++A   MW+   +VR+ M+++ L K PGCSW+EL   +H F
Sbjct: 640 QKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTF 699

Query: 601 FVRDKSRLQVRDIYYMLDNM 620
           +    +  + + IY  L+ +
Sbjct: 700 YSGSTNHPESKKIYAFLETL 719


>gi|224107245|ref|XP_002314420.1| predicted protein [Populus trichocarpa]
 gi|222863460|gb|EEF00591.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  318 bits (816), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 183/531 (34%), Positives = 303/531 (57%), Gaps = 45/531 (8%)

Query: 102 EALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLI 161
           EA+ ++  M   GV  ++ + + V+ AC R+G I +   +HGL+ K+ F   + +   L+
Sbjct: 44  EAIKVYKEMRSVGVVPNEVTMASVISACCRVGRIWDCRMLHGLVIKMMFDGFVLVSTNLL 103

Query: 162 SLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISW 221
           ++Y     L  AR LFD+M  ++ VS+N M++GY K+G    A+E+F+ +P  +++++SW
Sbjct: 104 NMYCASSSLGEARALFDEMQEKNVVSWNVMLNGYSKAGFANLAKEVFEMIP--DKDIVSW 161

Query: 222 NSVLNGYAQLKSGLQFAWQIFEKM------PER----DLIS------------------- 252
            ++++GY +++  L+ A  ++  M      P      DLIS                   
Sbjct: 162 GTIIDGYVRVER-LREALMMYRLMVSTGLGPSEVTMIDLISACGRAMAIVEGQQLHCVVV 220

Query: 253 ----------WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
                       +++H    CG++++A    +   K  V S   +I G+ +   +D AR 
Sbjct: 221 KTSFDCYDFVQATVIHFYSACGRINEACFQLEFGMKDHVASRNALIAGFIRNRIIDQARE 280

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           LF+EMP+RDV + + M+ GY ++     ALE+F  M     + P++ ++V V SAIA LG
Sbjct: 281 LFNEMPERDVFSWSTMISGYTQSDQPGMALELFHRMVTS-GIRPNEVTMVSVFSAIAALG 339

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED--GSVDHWNAM 420
            + +G   H Y+  +   LN     ++IDMY+KCGSI  A++VF QI D   +V  WN +
Sbjct: 340 TLKEGRWAHEYVHYNSIPLNDNLSASIIDMYAKCGSINTALEVFYQIRDKASTVSPWNTI 399

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           I GLA HG  +L+ ++  +++R  I+   ITF G+L+AC HAGLV  G   F+ M+  + 
Sbjct: 400 ICGLATHGHAKLSLEIYSDLQRRHIKLSAITFIGVLSACCHAGLVGLGKSYFKSMKSKYN 459

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           ++P+++HYGCMVD+LG+AG +E    LI  MPM+ + VIW  LLSAC+ + N+ +GE  A
Sbjct: 460 IDPDIRHYGCMVDLLGKAGRLEEVEELIRSMPMKADVVIWGMLLSACKTHRNITIGERAA 519

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           ++L  +D S+  S +LLSN++A +G W DA  VR +M+   + +LPG S +
Sbjct: 520 ENLAKLDPSHGPSRILLSNLYADVGRWEDAFLVRRVMQSHRMHRLPGYSGV 570



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 212/421 (50%), Gaps = 33/421 (7%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           KD   W  II  Y      +EAL+M+ LM+  G+   + +   ++ AC R   I EG Q+
Sbjct: 156 KDIVSWGTIIDGYVRVERLREALMMYRLMVSTGLGPSEVTMIDLISACGRAMAIVEGQQL 215

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYL-EFARQLFDKMGIRDSV-SYNSMIDGYVKSG 199
           H ++ K +F    F+Q  +I  Y  CG + E   QL  + G++D V S N++I G++++ 
Sbjct: 216 HCVVVKTSFDCYDFVQATVIHFYSACGRINEACFQL--EFGMKDHVASRNALIAGFIRNR 273

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP-------ERDLIS 252
            I+ ARELF+ MP  ER++ SW+++++GY Q       A ++F +M        E  ++S
Sbjct: 274 IIDQARELFNEMP--ERDVFSWSTMISGYTQ-SDQPGMALELFHRMVTSGIRPNEVTMVS 330

Query: 253 WNSMLH--GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
             S +   G +K G+       ++ +P  D +S A++ID YAK G ++ A  +F ++  +
Sbjct: 331 VFSAIAALGTLKEGRWAHEYVHYNSIPLNDNLS-ASIIDMYAKCGSINTALEVFYQIRDK 389

Query: 311 --DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
              V   N ++ G   +G++  +LEI+ ++Q   ++     + + VLSA    G +  G 
Sbjct: 390 ASTVSPWNTIICGLATHGHAKLSLEIYSDLQ-RRHIKLSAITFIGVLSACCHAGLVGLGK 448

Query: 369 AIHRYLEKDQFSLNG--KHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLA 425
           +  + + K +++++   +H   ++D+  K G +E   ++   +     V  W  +++   
Sbjct: 449 SYFKSM-KSKYNIDPDIRHYGCMVDLLGKAGRLEEVEELIRSMPMKADVVIWGMLLSACK 507

Query: 426 IH---GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR--RIHK 480
            H    +GE A + L +++  S  P  I  + L    A  G  ++  L   +M+  R+H+
Sbjct: 508 THRNITIGERAAENLAKLDP-SHGPSRILLSNLY---ADVGRWEDAFLVRRVMQSHRMHR 563

Query: 481 L 481
           L
Sbjct: 564 L 564



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 161/347 (46%), Gaps = 41/347 (11%)

Query: 160 LISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLI 219
           +IS YV+ G L+ AR+LF+ M  +  VSY +MI G+VK+     A +++  M  R   ++
Sbjct: 1   MISGYVKSGNLDDARKLFEVMPQKGCVSYTTMIMGFVKNDFWGEAIKVYKEM--RSVGVV 58

Query: 220 SWNSVLNGYAQLKSGLQFAWQ-------IFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
                +         +   W        + + M +  ++   ++L+       + +A+AL
Sbjct: 59  PNEVTMASVISACCRVGRIWDCRMLHGLVIKMMFDGFVLVSTNLLNMYCASSSLGEARAL 118

Query: 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
           FD+M +++VVSW  M++GY+K G  ++A+ +F+ +P +D+V+   ++ GYVR     +AL
Sbjct: 119 FDEMQEKNVVSWNVMLNGYSKAGFANLAKEVFEMIPDKDIVSWGTIIDGYVRVERLREAL 178

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDM 392
            ++  +     L P + +++ ++SA  +   I +G  +H  + K  F         +I  
Sbjct: 179 MMY-RLMVSTGLGPSEVTMIDLISACGRAMAIVEGQQLHCVVVKTSFDCYDFVQATVIHF 237

Query: 393 YSKCGS-------------------------------IENAIKVFEQIEDGSVDHWNAMI 421
           YS CG                                I+ A ++F ++ +  V  W+ MI
Sbjct: 238 YSACGRINEACFQLEFGMKDHVASRNALIAGFIRNRIIDQARELFNEMPERDVFSWSTMI 297

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
           +G        +A +L   M    I P+++T   + +A A  G +KEG
Sbjct: 298 SGYTQSDQPGMALELFHRMVTSGIRPNEVTMVSVFSAIAALGTLKEG 344


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  318 bits (816), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 206/628 (32%), Positives = 319/628 (50%), Gaps = 86/628 (13%)

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           A Y+F K      ++D F WN ++  Y+      EAL ++  ML   +  + ++   VLK
Sbjct: 151 AWYVFGKM----SERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLK 206

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
            C+ +  I  G +IH  + +  F SD+ + N LI++YV+CG +  AR LFDKM  RD +S
Sbjct: 207 TCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRIS 266

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRE----RNLISWNSV---------------LNGY 228
           +N+MI GY ++G      ELF  M  RE     +LI+  +V               ++GY
Sbjct: 267 WNAMISGYFENGGGLEGLELFSMM--RELSVDPDLITMTTVASACELLDNERLGRGVHGY 324

Query: 229 A----------------QLKSGL---QFAWQIFEKMPERDLISWNSM------------- 256
                            Q+ S L   + A  +F +M  +D++SW +M             
Sbjct: 325 VVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKA 384

Query: 257 ----------------------LHGCVKCGKMDDAQALFDKMPKRDVVSWA----NMIDG 290
                                 L  C   G +D    L +   K  +VS      ++ID 
Sbjct: 385 VETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDM 444

Query: 291 YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
           Y+K   VD A  +F  +  ++VV+  +++ G   N  S +AL  F  M+  +   P+  +
Sbjct: 445 YSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKESM--KPNSVT 502

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE 410
           L+ VLSA A++G + +G  IH +  +     +G    A++DMY +CG    A+  F   +
Sbjct: 503 LISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-Q 561

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470
              V  WN ++ G A  G  +LA +L  +M  L I PD+ITF  LL AC+ +G+V EGL 
Sbjct: 562 KKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLE 621

Query: 471 CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNY 530
            F +M+  + L P L+HY C+VDILGRAG ++ A + I+DMP+ P+  IW  LL+ACR +
Sbjct: 622 YFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIH 681

Query: 531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSW 590
            N+ +GE  AK +   D+ +   Y+LL N++AG G W+   +VRS+M+ER L   PGCSW
Sbjct: 682 RNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSW 741

Query: 591 IELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           +E++G VH F   D S  Q ++I  +LD
Sbjct: 742 VEIKGKVHAFLSGDNSHSQSKEINGVLD 769



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 139/508 (27%), Positives = 227/508 (44%), Gaps = 55/508 (10%)

Query: 42  FIKNTHLTTKLVASFSSSPCT--PLT-EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGL 98
           F +++HL T L  S    P    P T  F++ +    H  R+ ++  +  A +   +   
Sbjct: 4   FAQSSHLLTYLDRSNPQVPNNHNPKTLSFSKNLQTHKHTLRKTQEISVVGAAVSHSAIDQ 63

Query: 99  DPKEALVMFCL-------------MLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
                L   CL             ML+  + V++ +   +L+ C      +EG +++ L+
Sbjct: 64  TQNLELRELCLQGNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELV 123

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
                   + L N L+S++VR G L  A  +F KM  RD  S+N ++ GY K+G  + A 
Sbjct: 124 SSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEAL 183

Query: 206 ELFDSMPIRE--RNLISWNSVLN---GYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
            L+  M   E   N+ ++ SVL    G + +  G +    +     E D+   N+++   
Sbjct: 184 NLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMY 243

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
           VKCG + +A+ LFDKMPKRD +SW                               NAM+ 
Sbjct: 244 VKCGDISNARMLFDKMPKRDRISW-------------------------------NAMIS 272

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           GY  NG  ++ LE+F  M+ EL + PD  ++  V SA   L +   G  +H Y+ K +F 
Sbjct: 273 GYFENGGGLEGLELFSMMR-ELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFG 331

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
            +     +LI MYS  G +E A  VF ++E   V  W AMI  L  H L   A +    M
Sbjct: 332 GDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMM 391

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500
           E   I PD+IT   +L+ACA  G +  G+   E+  +   L   +     ++D+  +   
Sbjct: 392 ELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKT-GLVSHVIVSNSLIDMYSKCKC 450

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSACR 528
           ++ A  +  ++  + N V W +L+   R
Sbjct: 451 VDNALEVFRNISGK-NVVSWTSLILGLR 477



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 135/310 (43%), Gaps = 37/310 (11%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           ++H   I TG + +  ++  L+  +S   C    + A  +F         K+   W ++I
Sbjct: 421 RLHEIAIKTGLVSHVIVSNSLIDMYSKCKC---VDNALEVFRNISG----KNVVSWTSLI 473

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL--VLKACSRLGLIEEGLQIHGLLRKVA 149
                     EAL+ F  M +   S+   S +L  VL AC+R+G +  G +IH    +  
Sbjct: 474 LGLRINNRSFEALLFFRQMKE---SMKPNSVTLISVLSACARIGALMRGKEIHAHALRTG 530

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD 209
            G D FL N ++ +YVRCG    A   F+    +D  ++N ++ GY + G  + A ELFD
Sbjct: 531 VGFDGFLPNAILDMYVRCGRKVPALNQFNSQK-KDVTAWNILLTGYAQQGQAKLAVELFD 589

Query: 210 SM-----PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV--- 261
            M        E   IS     +    +  GL++    F  M  +  ++ N   + CV   
Sbjct: 590 KMLELEIHPDEITFISLLCACSKSGMVTEGLEY----FNIMKNKYNLTPNLKHYACVVDI 645

Query: 262 --KCGKMDDAQALFDKMPKR-DVVSWANMIDG-----YAKLGRVDIARRLFDEMPKRD-- 311
             + G++DDA      MP R D   W  +++        +LG +  A+R+F++  K    
Sbjct: 646 LGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEI-AAKRVFEKDNKSVGY 704

Query: 312 -VVACNAMMG 320
            ++ CN   G
Sbjct: 705 YILLCNLYAG 714


>gi|334185093|ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
 gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g05240
 gi|332640689|gb|AEE74210.1| mitochondrial editing factor 19 [Arabidopsis thaliana]
          Length = 565

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 192/573 (33%), Positives = 308/573 (53%), Gaps = 24/573 (4%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L  C++L ++NQ+H  MI +  I+N    ++L+   ++ P T    +AR +F        
Sbjct: 13  LENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDC--- 69

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
               ++WN++I+ YS+  +P +AL+ +  ML  G S D F+   VLKACS L  I+ G  
Sbjct: 70  -PSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSC 128

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +HG + K  F  ++++  CL+ +Y+ CG + +  ++F+ +   + V++ S+I G+V +  
Sbjct: 129 VHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNR 188

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
              A E F  M   + N +  N  +     +  G             +D+++     HG 
Sbjct: 189 FSDAIEAFREM---QSNGVKANETIMVDLLVACGRC-----------KDIVT-GKWFHGF 233

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
           ++    D     F      +V+   ++ID YAK G +  AR LFD MP+R +V+ N+++ 
Sbjct: 234 LQGLGFD---PYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIIT 290

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           GY +NG + +AL +F +M  +L + PD  + + V+ A    G    G +IH Y+ K  F 
Sbjct: 291 GYSQNGDAEEALCMFLDM-LDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFV 349

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
            +     AL++MY+K G  E+A K FE +E      W  +I GLA HG G  A  +   M
Sbjct: 350 KDAAIVCALVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRM 409

Query: 441 -ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG 499
            E+ +  PD IT+ G+L AC+H GLV+EG   F  MR +H LEP ++HYGCMVDIL RAG
Sbjct: 410 QEKGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAG 469

Query: 500 HIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559
             E A  L++ MP++PN  IW  LL+ C  +ENL + + +   +   +   S  YVLLSN
Sbjct: 470 RFEEAERLVKTMPVKPNVNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSN 529

Query: 560 MFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           ++A  G W D + +R  MK + + K+ G S +E
Sbjct: 530 IYAKAGRWADVKLIRESMKSKRVDKVLGHSSVE 562


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 162/404 (40%), Positives = 241/404 (59%), Gaps = 2/404 (0%)

Query: 217 NLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM 276
           +L    +++  YA+       A   F++ P RD+   N ML   V  G++ +A+ +FD M
Sbjct: 74  DLFVRTALVEAYAKAGRA-DLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEARRVFDGM 132

Query: 277 PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFD 336
            +RD+VSW  MI GYA  G VD+AR +F+ M  RD  + ++MM  Y +   S  ALE++ 
Sbjct: 133 RERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWR 192

Query: 337 NMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC 396
            M+    ++PD  ++V VLSA + +G +  G  +H+++E +   L+ K G ALIDMY+KC
Sbjct: 193 EMRAAC-VNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKC 251

Query: 397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLL 456
           G IEN+++VF  +    V  W++MI GLA HG G  A  L   M    ++P+++TF G+L
Sbjct: 252 GDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVL 311

Query: 457 NACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPN 516
            +C H GLV +G   F  M  +H + P++QHYGCMVD+LGR+GHIE A+ LI DMP EP+
Sbjct: 312 ISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPD 371

Query: 517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSM 576
            VIWR LL ACR Y+N+ V E     L  +D      YVLLSN++A    W     +R  
Sbjct: 372 AVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEGVAEMRRT 431

Query: 577 MKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           ++   ++++PG S IE +  +HEF   D+S  + ++IY ML  M
Sbjct: 432 LRRERIQRIPGRSSIEWQNTIHEFISGDRSHPRSKEIYKMLGEM 475



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 191/442 (43%), Gaps = 94/442 (21%)

Query: 110 MLDNGVSVDKFSASLVLKACSRL-----GLIEEGL---QIHGLLRKVAFGS-DLFLQNCL 160
           +LDN      FS SL ++A + L      + + GL    +H    K  F + DLF++  L
Sbjct: 27  LLDN-----SFSLSLAMQASAALSASVPAMRDLGLGAASLHARALKSGFAAADLFVRTAL 81

Query: 161 ISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLIS 220
           +  Y + G  + AR  FD+   RD    N M+  YV  G +  AR +FD M  RER+++S
Sbjct: 82  VEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEARRVFDGM--RERDMVS 139

Query: 221 WNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP--- 277
           WN++++GYA +   +  A ++F  M +RD  SW+SM+    K  +  DA  L+ +M    
Sbjct: 140 WNTMIHGYA-VNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAAC 198

Query: 278 ------------------------------------KRDVVSWANMIDGYAKLGRVDIAR 301
                                               + DV     +ID YAK G ++ + 
Sbjct: 199 VNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSV 258

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
           R+F  MP +DV+  ++M+ G   +G+   AL +F  M  E  L P++ + + VL +   L
Sbjct: 259 RVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSE-GLQPNEVTFIGVLISCTHL 317

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
           G +  G    +Y      S++  HGV                          V H+  M+
Sbjct: 318 GLVSDG---KKYFS----SMSVVHGVT-----------------------PKVQHYGCMV 347

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
           + L   G  E A  L+ +M     EPD + +  LL AC    + K   +  E M ++  L
Sbjct: 348 DLLGRSGHIEEAKQLIRDM---PFEPDAVIWRALLGACR---IYKNVEVAEEAMAKLRVL 401

Query: 482 EPELQ-HYGCMVDILGRAGHIE 502
           +P    HY  + +I  +A   E
Sbjct: 402 DPHADGHYVLLSNIYAQANSWE 423



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 115/263 (43%), Gaps = 44/263 (16%)

Query: 269 AQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYS 328
           A+AL       D+     +++ YAK GR D+AR  FDE P+RDV  CN M+  YV  G  
Sbjct: 63  ARALKSGFAAADLFVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRGEV 122

Query: 329 MKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVA 388
            +A  +FD M+                                   E+D  S N      
Sbjct: 123 AEARRVFDGMR-----------------------------------ERDMVSWN-----T 142

Query: 389 LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD 448
           +I  Y+  G ++ A +VF  ++D     W++M++        + A +L  EM    + PD
Sbjct: 143 MIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPD 202

Query: 449 DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLI 508
             T   +L+AC+  G +  G    + +   + +E +++    ++D+  + G IE +  + 
Sbjct: 203 CTTMVSVLSACSDMGALAVGAEVHQFVES-NGVELDVKLGTALIDMYAKCGDIENSVRVF 261

Query: 509 EDMPMEPNDVI-WRTLLSACRNY 530
             MP++  DV+ W +++    N+
Sbjct: 262 HSMPVK--DVLTWSSMIIGLANH 282



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 136/310 (43%), Gaps = 46/310 (14%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           + +D F W++++  Y+ G   K+AL ++  M    V+ D  +   VL ACS +G +  G 
Sbjct: 164 DDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGA 223

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           ++H  +       D+ L   LI +Y +CG +E + ++F  M ++D ++++SMI G    G
Sbjct: 224 EVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHG 283

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
               A  LF  M                   L  GLQ         P    +++  +L  
Sbjct: 284 FGHDALSLFSRM-------------------LSEGLQ---------PNE--VTFIGVLIS 313

Query: 260 CVKCGKMDDAQALFDKM-------PKRDVVSWANMIDGYAKLGRVDIARRLFDEMP-KRD 311
           C   G + D +  F  M       PK  V  +  M+D   + G ++ A++L  +MP + D
Sbjct: 314 CTHLGLVSDGKKYFSSMSVVHGVTPK--VQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPD 371

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCEL-YLHPDDASLVIVLSAIAQLGHIDKGVA- 369
            V   A++G         K +E+ +    +L  L P      ++LS I    +  +GVA 
Sbjct: 372 AVIWRALLGAC----RIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEGVAE 427

Query: 370 IHRYLEKDQF 379
           + R L +++ 
Sbjct: 428 MRRTLRRERI 437


>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
 gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 180/507 (35%), Positives = 285/507 (56%), Gaps = 18/507 (3%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +L+ C     I E   IH  + K +     FL   ++ +  +   L +A  LF ++   +
Sbjct: 20  ILQNCKN---IVELKSIHAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEPN 76

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVL-------------NGYAQL 231
              YN+MI  +  +  + +   LF    +R ++  S N +              +G    
Sbjct: 77  GYLYNAMIRAHTHN-KVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCY 135

Query: 232 KSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGY 291
             G Q    + +  P+ ++   N+++    KC  + DA  +FD M +RD +SW ++I G+
Sbjct: 136 NLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGH 195

Query: 292 AKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASL 351
             +G++  A  LFD MP R +V+  AM+ GY R G    AL +F  MQ  + + PD+ S+
Sbjct: 196 VGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQI-VGVEPDEISI 254

Query: 352 VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED 411
           + VL A AQLG ++ G  IH Y +++          AL++MYSKCG I  A ++F+Q+  
Sbjct: 255 ISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSK 314

Query: 412 GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC 471
           G V  W+ MI GLA HG    A +L   M++  IEP+ ITF GLL+ACAHAG   EGL  
Sbjct: 315 GDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAY 374

Query: 472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYE 531
           F+ M + + +EPE++HYGC+VDILGRAG +  A ++IE MPM+P+  IW +LLS+CR + 
Sbjct: 375 FDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLSSCRTHS 434

Query: 532 NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           NL++     +HL  ++  ++ +YVLLSN++A L  W+   R+R ++K +++KK PG S I
Sbjct: 435 NLDIAIIAMEHLEELEPDDTGNYVLLSNIYADLAKWDGVSRMRKLIKSKSMKKTPGSSLI 494

Query: 592 ELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           ++  VV EF   D S+   RDI+++L+
Sbjct: 495 DINNVVQEFVSWDDSKPFSRDIFWLLE 521



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 129/451 (28%), Positives = 234/451 (51%), Gaps = 38/451 (8%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           +L+ CK + ++  IHA +I     +++ L TK+V       C    +      +    F+
Sbjct: 20  ILQNCKNIVELKSIHAHVIKYSLSQSSFLVTKMV-----DVCDKTEDLG----YASLLFK 70

Query: 80  EKKDP--FLWNAIIKTYSHGLDPKEALVMFCLML-------DNGVSVDKFSASLVLKACS 130
           + K+P  +L+NA+I+ ++H      A++ +  ML       +N +  D+F+   V+K+CS
Sbjct: 71  QVKEPNGYLYNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCS 130

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
            L     G Q+H  L K    S++ ++N LI +Y +C  L  A ++FD M  RD++S+NS
Sbjct: 131 GLVCYNLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNS 190

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP---- 246
           +I G+V  G +  A  LFD MP   R ++SW ++++GY +L S    A  +F +M     
Sbjct: 191 IISGHVGVGQMRKAGALFDLMPY--RTIVSWTAMISGYTRLGSYAD-ALYVFRQMQIVGV 247

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALF---DKMPKRDVVSWAN-MIDGYAKLGRVDIARR 302
           E D IS  S+L  C + G ++  + +    D+       S  N +++ Y+K G +  A +
Sbjct: 248 EPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQ 307

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           LFD+M K DV++ + M+GG   +G + +A+E+F  M+ +  + P+  + + +LSA A  G
Sbjct: 308 LFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMK-KAKIEPNGITFLGLLSACAHAG 366

Query: 363 HIDKGVAIHRYLEKD-QFSLNGKHGVALIDMYSKCGSIENAIKVFEQI---EDGSVDHWN 418
             ++G+A    + KD       +H   L+D+  + G +  A+ V E++    D  +  W 
Sbjct: 367 FWNEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKI--WG 424

Query: 419 AMINGLAIHGLGELAFDLLMEMERLSIEPDD 449
           ++++    H   ++A   +  +E L  EPDD
Sbjct: 425 SLLSSCRTHSNLDIAIIAMEHLEEL--EPDD 453


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 206/628 (32%), Positives = 319/628 (50%), Gaps = 86/628 (13%)

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           A Y+F K      ++D F WN ++  Y+      EAL ++  ML   +  + ++   VLK
Sbjct: 151 AWYVFGKM----SERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLK 206

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
            C+ +  I  G +IH  + +  F SD+ + N LI++YV+CG +  AR LFDKM  RD +S
Sbjct: 207 TCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRIS 266

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRE----RNLISWNSV---------------LNGY 228
           +N+MI GY ++G      ELF  M  RE     +LI+  +V               ++GY
Sbjct: 267 WNAMISGYFENGGGLEGLELFSMM--RELSVDPDLITMTTVASACELLDNERLGRGVHGY 324

Query: 229 A----------------QLKSGL---QFAWQIFEKMPERDLISWNSM------------- 256
                            Q+ S L   + A  +F +M  +D++SW +M             
Sbjct: 325 VVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKA 384

Query: 257 ----------------------LHGCVKCGKMDDAQALFDKMPKRDVVSWA----NMIDG 290
                                 L  C   G +D    L +   K  +VS      ++ID 
Sbjct: 385 VETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDM 444

Query: 291 YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
           Y+K   VD A  +F  +  ++VV+  +++ G   N  S +AL  F  M+  +   P+  +
Sbjct: 445 YSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKESM--KPNSVT 502

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE 410
           L+ VLSA A++G + +G  IH +  +     +G    A++DMY +CG    A+  F   +
Sbjct: 503 LISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-Q 561

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470
              V  WN ++ G A  G  +LA +L  +M  L I PD+ITF  LL AC+ +G+V EGL 
Sbjct: 562 KKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLE 621

Query: 471 CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNY 530
            F +M+  + L P L+HY C+VDILGRAG ++ A + I+DMP+ P+  IW  LL+ACR +
Sbjct: 622 YFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIH 681

Query: 531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSW 590
            N+ +GE  AK +   D+ +   Y+LL N++AG G W+   +VRS+M+ER L   PGCSW
Sbjct: 682 RNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSW 741

Query: 591 IELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           +E++G VH F   D S  Q ++I  +LD
Sbjct: 742 VEIKGKVHAFLSGDNSHSQSKEINGVLD 769



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 139/508 (27%), Positives = 227/508 (44%), Gaps = 55/508 (10%)

Query: 42  FIKNTHLTTKLVASFSSSPCT--PLT-EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGL 98
           F +++HL T L  S    P    P T  F++ +    H  R+ ++  +  A +   +   
Sbjct: 4   FAQSSHLLTYLDRSNPQVPNNHNPKTLSFSKNLQTHKHTLRKTQEISVVGAAVSHSAIDQ 63

Query: 99  DPKEALVMFCL-------------MLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
                L   CL             ML+  + V++ +   +L+ C      +EG +++ L+
Sbjct: 64  TQNLELRELCLQGNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELV 123

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
                   + L N L+S++VR G L  A  +F KM  RD  S+N ++ GY K+G  + A 
Sbjct: 124 SSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEAL 183

Query: 206 ELFDSMPIRE--RNLISWNSVLN---GYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
            L+  M   E   N+ ++ SVL    G + +  G +    +     E D+   N+++   
Sbjct: 184 NLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMY 243

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
           VKCG + +A+ LFDKMPKRD +SW                               NAM+ 
Sbjct: 244 VKCGDISNARMLFDKMPKRDRISW-------------------------------NAMIS 272

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           GY  NG  ++ LE+F  M+ EL + PD  ++  V SA   L +   G  +H Y+ K +F 
Sbjct: 273 GYFENGGGLEGLELFSMMR-ELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFG 331

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
            +     +LI MYS  G +E A  VF ++E   V  W AMI  L  H L   A +    M
Sbjct: 332 GDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMM 391

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500
           E   I PD+IT   +L+ACA  G +  G+   E+  +   L   +     ++D+  +   
Sbjct: 392 ELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKT-GLVSHVIVSNSLIDMYSKCKC 450

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSACR 528
           ++ A  +  ++  + N V W +L+   R
Sbjct: 451 VDNALEVFRNISGK-NVVSWTSLILGLR 477



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 135/310 (43%), Gaps = 37/310 (11%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           ++H   I TG + +  ++  L+  +S   C    + A  +F         K+   W ++I
Sbjct: 421 RLHEIAIKTGLVSHVIVSNSLIDMYSKCKC---VDNALEVFRNISG----KNVVSWTSLI 473

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL--VLKACSRLGLIEEGLQIHGLLRKVA 149
                     EAL+ F  M +   S+   S +L  VL AC+R+G +  G +IH    +  
Sbjct: 474 LGLRINNRSFEALLFFRQMKE---SMKPNSVTLISVLSACARIGALMRGKEIHAHALRTG 530

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD 209
            G D FL N ++ +YVRCG    A   F+    +D  ++N ++ GY + G  + A ELFD
Sbjct: 531 VGFDGFLPNAILDMYVRCGRKVPALNQFNSQK-KDVTAWNILLTGYAQQGQAKLAVELFD 589

Query: 210 SM-----PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV--- 261
            M        E   IS     +    +  GL++    F  M  +  ++ N   + CV   
Sbjct: 590 KMLELEIHPDEITFISLLCACSKSGMVTEGLEY----FNIMKNKYNLTPNLKHYACVVDI 645

Query: 262 --KCGKMDDAQALFDKMPKR-DVVSWANMIDG-----YAKLGRVDIARRLFDEMPKRD-- 311
             + G++DDA      MP R D   W  +++        +LG +  A+R+F++  K    
Sbjct: 646 LGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEI-AAKRVFEKDNKSVGY 704

Query: 312 -VVACNAMMG 320
            ++ CN   G
Sbjct: 705 YILLCNLYAG 714


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  318 bits (815), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 211/683 (30%), Positives = 328/683 (48%), Gaps = 86/683 (12%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           S  + L L+ K  T   + + HA++I  G+  +    TKL            T  AR +F
Sbjct: 7   SRNTLLALISKACTFPHLAETHAQLIRNGYQHDLATVTKLTQKLFD---VGATRHARALF 63

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL 132
           F       K D FL+N +IK +S   D         L+ +  +S D F+ +  + A    
Sbjct: 64  FSV----PKPDIFLFNVLIKGFSFSPDASSISFYTHLLKNTTLSPDNFTYAFAISASPDD 119

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
            L   G+ +H       F S+LF+ + L+ LY +   + +AR++FDKM  RD+V +N+MI
Sbjct: 120 NL---GMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMI 176

Query: 193 DGYVKSGNIESARELFDSMPIRERNLISWN--SVLNGYAQ--------------LKSGLQ 236
            G V++   + + ++F  M  +   L S    +VL   A+              LK G  
Sbjct: 177 TGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFH 236

Query: 237 F--------------------AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM 276
           F                    A  +F  + + DL+S+N+++ G    G+ + A   F ++
Sbjct: 237 FDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFREL 296

Query: 277 -PKRDVVSWANM------------------IDG--------------------YAKLGRV 297
                 VS + M                  I G                    Y++L  +
Sbjct: 297 LVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEI 356

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
           D+AR+LFDE  ++ V A NAM+ GY ++G +  A+ +F  M    +  P+  ++  +LSA
Sbjct: 357 DLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFT-PNPVTITSILSA 415

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
            AQLG +  G ++H+ ++      N     ALIDMY+KCG+I  A ++F+   + +   W
Sbjct: 416 CAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTW 475

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
           N MI G  +HG G+ A  L  EM  L  +P  +TF  +L AC+HAGLV+EG   F  M  
Sbjct: 476 NTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVN 535

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
            +++EP  +HY CMVDILGRAG +E A   I  MP+EP   +W TLL AC  +++ N+  
Sbjct: 536 KYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLAR 595

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVV 597
             ++ L  +D  N   YVLLSN+++    +  A  VR  +K+RNL K PGC+ IE+ G  
Sbjct: 596 VASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTP 655

Query: 598 HEFFVRDKSRLQVRDIYYMLDNM 620
           H F   D+S  Q   IY  L+ +
Sbjct: 656 HVFVCGDRSHSQTTSIYAKLEEL 678


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  318 bits (815), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 196/613 (31%), Positives = 312/613 (50%), Gaps = 63/613 (10%)

Query: 22  RKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAF 78
           + C   +DVN    +H   + TG + +  + + L+  ++ +           IF     F
Sbjct: 124 KACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNG---------KIFEGRRVF 174

Query: 79  REK--KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
            E   ++   W AII         KEALV F  M  + V  D ++ ++ LKAC+  G + 
Sbjct: 175 HEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALN 234

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G +IH    K  F    F+ N L ++Y +CG LE+   LF+KM +RD VS+ ++I   V
Sbjct: 235 YGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLV 294

Query: 197 KSGNIESARELFDSMPIRER----NLISWNSVLNGYAQLKS---GLQFAWQIFEKMPERD 249
           + G  E A + F  M  RE     N  ++ +V++G A L     G Q    I        
Sbjct: 295 QMGQEECAVQAFIRM--RESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAAS 352

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
           L   NS++    KCG++  +  +F +M +RD+VSW+ +I GY++ G V            
Sbjct: 353 LSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVS----------- 401

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
                               +A E+   M+ E    P + +L  VLSA   +  ++ G  
Sbjct: 402 --------------------EAFELLSWMRME-GPKPTEFALASVLSACGNMAILEHGKQ 440

Query: 370 IHRYLEKDQFSLNGKHGV----ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
           +H Y+     S+  +H      ALI+MY KCGSIE A ++F+  E+  +  W AMING A
Sbjct: 441 LHAYV----LSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYA 496

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL 485
            HG      DL  ++ R+ + PD +TF G+L+AC+HAGLV  G   F  M + +++ P  
Sbjct: 497 EHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSK 556

Query: 486 QHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIG 545
           +HYGCM+D+L RAG +  A ++IE MP   +DV+W TLL ACR + ++  G   A+ ++ 
Sbjct: 557 EHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQ 616

Query: 546 MDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDK 605
           ++ + + +++ L+N++A  G W +A  +R +MK + + K PG SWI+++ +V  F   D+
Sbjct: 617 LEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDLVFAFVAGDR 676

Query: 606 SRLQVRDIYYMLD 618
           S  Q  DIY MLD
Sbjct: 677 SHPQGEDIYNMLD 689



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 125/542 (23%), Positives = 224/542 (41%), Gaps = 113/542 (20%)

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
           +DL   N  +   V+ G+L  AR++FDKM  +D +S+ ++I GYV + +   A  LF +M
Sbjct: 47  TDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNM 106

Query: 212 PIRE------------------RNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISW 253
            +                     + +++  +L+GYA +K+GL              +   
Sbjct: 107 RVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYA-VKTGLV-----------NSVFVG 154

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
           +++L    K GK+ + + +F +MP R+VVSW                             
Sbjct: 155 SALLDMYTKNGKIFEGRRVFHEMPMRNVVSW----------------------------- 185

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
              A++ G VR GY+ +AL  F  M     +  D  +  I L A A  G ++ G  IH  
Sbjct: 186 --TAIITGLVRAGYNKEALVYFSEMW-RSRVEYDSYTFAIALKACADSGALNYGREIHAQ 242

Query: 374 LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
             K  F ++      L  MY+KCG +E  + +FE++    V  W  +I  L   G  E A
Sbjct: 243 AMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECA 302

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACA-----------HAGLVKEGLL------------ 470
               + M    + P++ TF  +++ CA           HA ++  GL             
Sbjct: 303 VQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTM 362

Query: 471 ---CFELMRR---IHKL-EPELQHYGCMVDILGRAGHIEAARNLIEDMPME---PNDVIW 520
              C +L       H++   ++  +  ++    + GH+  A  L+  M ME   P +   
Sbjct: 363 YAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFAL 422

Query: 521 RTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV-LLSNMFAGLGMWNDARRVRSMMKE 579
            ++LSAC N   L  G+ +  +++ +   +++  +  L NM+   G   +A R+    + 
Sbjct: 423 ASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAEN 482

Query: 580 RNLKKLPGCSWIEL-EGVVHEFFVRDKSRLQVRDIYYMLDNM-WTPDSVA-----TSCTH 632
            ++      SW  +  G     + R     +V D++  +  +   PDSV      ++C+H
Sbjct: 483 DDI-----VSWTAMINGYAEHGYSR-----EVIDLFEKIPRVGLRPDSVTFIGVLSACSH 532

Query: 633 YG 634
            G
Sbjct: 533 AG 534


>gi|449516814|ref|XP_004165441.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial-like isoform 1 [Cucumis sativus]
          Length = 703

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 183/531 (34%), Positives = 297/531 (55%), Gaps = 45/531 (8%)

Query: 102 EALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLI 161
           EA+ +F  M   GV+ ++ + + V+ ACS +G I     +H L+ K+ F   + +   L+
Sbjct: 176 EAIEVFKDMRSAGVAPNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLL 235

Query: 162 SLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISW 221
            +Y     L+  ++LF++M +R++VS+N M+ GYVKSG ++ ARELF+ +P  ER++ SW
Sbjct: 236 HMYCVFSSLKDTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIP--ERDVFSW 293

Query: 222 NSVLNGYAQLKSGLQFAWQIFEKMPERDL-------------------ISWNSMLHGCV- 261
             +++G+ Q+K  L+ A  ++  M + DL                   I      H  + 
Sbjct: 294 AIMIDGFVQMKR-LRKALLLYSAMRKSDLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIV 352

Query: 262 -------------------KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
                               C ++D A   +    K  + S   MI G+ K G +D AR+
Sbjct: 353 KNGFVCFDFIQATIISFYAACRRIDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQ 412

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           +FD MP++DV + + M+ GY +N     AL++F  M  +  + P++ ++V V SAIA LG
Sbjct: 413 IFDMMPEKDVFSWSTMISGYAQNELPDVALDLFHGM-IDSKVEPNEITMVSVFSAIAALG 471

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED--GSVDHWNAM 420
            + +G   H Y+      LN     A+IDMY+KCGSI+ A+ VF QI+D   +V  WNA+
Sbjct: 472 KLPEGRWAHEYVCNKVIPLNDNLSAAIIDMYAKCGSIDTALDVFRQIKDKTSTVSPWNAI 531

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           I GLA+HG   L+ ++   ++R SI+ + ITF G+L+AC HAGLV+ G   F  M+  H 
Sbjct: 532 ICGLAMHGHANLSLEIFSNLQRRSIKLNSITFLGVLSACCHAGLVEVGERYFWSMKTQHG 591

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           +EP ++HYGC+VD+LGR G +  A  ++  MPM+ + VIW TLL++ R +  + +GE  A
Sbjct: 592 VEPNIKHYGCLVDLLGRVGRLREAEEIVRTMPMKADVVIWGTLLASSRTHGEVEIGERAA 651

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           ++L  +  S+    VLLSN++A  G+W DA  VR  ++ + + + PG S +
Sbjct: 652 ENLARLQPSHGPGRVLLSNLYADAGLWEDAALVRRAIQSQRMIRSPGYSGV 702



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 145/497 (29%), Positives = 229/497 (46%), Gaps = 78/497 (15%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVD-KFSASLVLKACSRLGLIEEGLQIHGLL 145
           W +   T      P + L  F     +  S+D + S    LK C+    I  G QIH ++
Sbjct: 28  WVSTFSTIESSPRPLQNLSSFLNGRPSSSSLDCELSVVSALKYCASSSAISSGQQIHAIV 87

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
            K  F S+ F+ N LI++YV+CG L  AR LFD   + DSVS N M+ GYVK   +E+AR
Sbjct: 88  LKYGFNSNTFILNSLINMYVKCGLLSSARLLFDSCSVLDSVSCNIMMSGYVKLRQLENAR 147

Query: 206 ELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM------PERDLIS------- 252
           +LF  MP  ER  +S+ +++ G AQ     + A ++F+ M      P    ++       
Sbjct: 148 QLFAKMP--ERGCVSYTTMILGLAQNDCWGE-AIEVFKDMRSAGVAPNEVTMASVMSACS 204

Query: 253 -----WN-SMLHGCV------------------KC--GKMDDAQALFDKMPKRDVVSWAN 286
                WN  MLH  V                   C    + D + LF++MP R+ VSW  
Sbjct: 205 HIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCVFSSLKDTKRLFNEMPVRNTVSWNV 264

Query: 287 MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP 346
           M+ GY K G VD AR LF+ +P+RDV +   M+ G+V+     KAL ++  M+ +  LHP
Sbjct: 265 MLKGYVKSGLVDQARELFERIPERDVFSWAIMIDGFVQMKRLRKALLLYSAMR-KSDLHP 323

Query: 347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC---------- 396
           ++  +V +LSA  Q   I++G   H  + K+ F         +I  Y+ C          
Sbjct: 324 NEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCFDFIQATIISFYAACRRIDLAYLQY 383

Query: 397 ---------------------GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
                                G I+ A ++F+ + +  V  W+ MI+G A + L ++A D
Sbjct: 384 QMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQNELPDVALD 443

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM-RRIHKLEPELQHYGCMVDI 494
           L   M    +EP++IT   + +A A  G + EG    E +  ++  L   L     ++D+
Sbjct: 444 LFHGMIDSKVEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKVIPLNDNLS--AAIIDM 501

Query: 495 LGRAGHIEAARNLIEDM 511
             + G I+ A ++   +
Sbjct: 502 YAKCGSIDTALDVFRQI 518



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 116/432 (26%), Positives = 205/432 (47%), Gaps = 47/432 (10%)

Query: 64  LTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSAS 123
           L + AR +F +      ++D F W  +I  +      ++AL+++  M  + +  ++    
Sbjct: 274 LVDQARELFERI----PERDVFSWAIMIDGFVQMKRLRKALLLYSAMRKSDLHPNEVLIV 329

Query: 124 LVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFAR---QLFDKM 180
            +L AC +   IEEG Q H L+ K  F    F+Q  +IS Y  C  ++ A    Q+ DK 
Sbjct: 330 DLLSACGQSVSIEEGRQFHSLIVKNGFVCFDFIQATIISFYAACRRIDLAYLQYQMSDKS 389

Query: 181 GIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK---SGLQF 237
            +  S   N MI G+ K+G I+ AR++FD MP  E+++ SW+++++GYAQ +     L  
Sbjct: 390 HLTSS---NVMIVGFTKNGMIDQARQIFDMMP--EKDVFSWSTMISGYAQNELPDVALDL 444

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK-----MPKRDVVSWANMIDGYA 292
              + +   E + I+  S+       GK+ + +   +      +P  D +S A +ID YA
Sbjct: 445 FHGMIDSKVEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKVIPLNDNLS-AAIIDMYA 503

Query: 293 KLGRVDIARRLFDEMPKR--DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
           K G +D A  +F ++  +   V   NA++ G   +G++  +LEIF N+Q    +  +  +
Sbjct: 504 KCGSIDTALDVFRQIKDKTSTVSPWNAIICGLAMHGHANLSLEIFSNLQ-RRSIKLNSIT 562

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV--------ALIDMYSKCGSIENA 402
            + VLSA    G ++ G    RY     +S+  +HGV         L+D+  + G +  A
Sbjct: 563 FLGVLSACCHAGLVEVG---ERYF----WSMKTQHGVEPNIKHYGCLVDLLGRVGRLREA 615

Query: 403 IKVFEQIE-DGSVDHWNAMINGLAIHG---LGELAFDLLMEMERLSIEPDDITFTGLLNA 458
            ++   +     V  W  ++     HG   +GE A + L  ++  S  P  +  + L   
Sbjct: 616 EEIVRTMPMKADVVIWGTLLASSRTHGEVEIGERAAENLARLQP-SHGPGRVLLSNLY-- 672

Query: 459 CAHAGLVKEGLL 470
            A AGL ++  L
Sbjct: 673 -ADAGLWEDAAL 683


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 203/613 (33%), Positives = 325/613 (53%), Gaps = 63/613 (10%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LL++C ++  + QIHA+++T    K      K+           L +FA    F    F 
Sbjct: 38  LLQQCLSIKQLKQIHAQLLTNSIHKPNSFLYKI---------ADLKDFAYASVF----FS 84

Query: 80  EKKDP--FLWNAIIKTYSHGLDPKE-ALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
              DP  + +N +I+  S   +    AL  +  M   G+  +  +   +  ACS L  +E
Sbjct: 85  NILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVE 144

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G   H  + +     D  + + LI++Y RCG          KMG               
Sbjct: 145 NGRMGHCSVIRRGLDEDGHVSHSLITMYARCG----------KMG--------------- 179

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----IS 252
                  AR++FD   I +++L+SWNS+++GY++++   + A  +F +M E       +S
Sbjct: 180 ------DARKVFDE--ISQKDLVSWNSMISGYSKMRHAGE-AVGLFREMMEAGFQPNEMS 230

Query: 253 WNSMLHGC-----VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
             S+L  C     +K G   +   + +KM     +  A +I  Y K G +  ARR+FD M
Sbjct: 231 LVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSA-LIHMYGKCGDLVSARRIFDSM 289

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
            K+D V  NAM+ GY +NG S +A+++F +M+      PD  +L+ +LSA A +G +D G
Sbjct: 290 KKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMS-STAPDQITLIGILSACASIGALDLG 348

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
             +  Y  +  F  +   G AL+DMY+KCGS++NA +VF  + + +   WNAMI+ LA H
Sbjct: 349 KQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFH 408

Query: 428 GLGELAFDLLMEM--ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL 485
           G  + A  L   M  E  ++ P+DITF G+L+AC HAGLV EG   F +M     L P++
Sbjct: 409 GQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKI 468

Query: 486 QHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIG 545
           +HY CMVD+  RAGH+E A + +  MP +P++VI   LL AC+  +N+++ E V K L+ 
Sbjct: 469 EHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLE 528

Query: 546 MDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDK 605
           ++ SNS +YV+ S ++A L  W+D+ R+R +MK++ + K PGCSWI++   +HEF   D 
Sbjct: 529 LEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDINSQLHEFHAGDV 588

Query: 606 SRLQVRDIYYMLD 618
              +  +I+ +LD
Sbjct: 589 LHQEWIEIHQILD 601


>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
 gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
          Length = 540

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 192/515 (37%), Positives = 293/515 (56%), Gaps = 21/515 (4%)

Query: 121 SASLVLKACSR-LGLIEE-GL------QIHGLLRKVAFGSDLFLQNCLISLYVRC---GY 169
           SAS  LKA  + + L+++ GL      QI   L   A   D +    +ISL+        
Sbjct: 2   SASRYLKASKKTISLLDQKGLTISQLKQIQSHLTVTATLKDPYAAAKIISLHAHSNARSS 61

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA 229
           L +A +LF  +  + +  +N+M+  +V+      A  L+  M   E N +  N   +   
Sbjct: 62  LFYAERLFLCLQNKSTFIWNTMMQAFVEKNEAVRAFSLYKHM--LESNYLPNNFTFSFVI 119

Query: 230 Q-------LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV 282
           +       L+ GL F  Q+ +   E      N ++H    CG MD A+ +FD   KRDVV
Sbjct: 120 RACIDVFNLQMGLCFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVV 179

Query: 283 SWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
           +W  +I GY   G+V IAR LFD MP+++ V+  A++ GYVR G+  +ALE+F +MQ   
Sbjct: 180 TWTCLISGYLNSGQVLIARELFDRMPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSG 239

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENA 402
           +   + AS+V  L+A A LG +D+G  IH Y+++   SL+   G ALIDMY+KCG IE A
Sbjct: 240 F-RLNRASIVGALTACAFLGALDQGRWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMA 298

Query: 403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
             VF++++D  V  +  +I+GLA H   E A DL   M+   + P+++TF  +LNAC+  
Sbjct: 299 CSVFDEMDDRDVYAFTCLISGLANHDKSEAAIDLFNRMQDEGVVPNEVTFVCVLNACSRM 358

Query: 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRT 522
           G+V EGL  FE M   + +EP++QHYGC+VD+LGRAG IE A+ ++ +MP++P+      
Sbjct: 359 GMVDEGLRIFESMSNRYVIEPQIQHYGCLVDLLGRAGKIEEAKQVVREMPLQPDSYTLGA 418

Query: 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
           LL ACR + ++ +GE +   L+     +   +VLLSNM+A    W DA ++R  M+++N+
Sbjct: 419 LLDACRVHGDVQLGEEMVDSLVQRCLDHGGVHVLLSNMYASADKWEDASKIRKKMEDKNI 478

Query: 583 KKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           +KLPGCS IE+ G V EF   D+S     DI ++L
Sbjct: 479 RKLPGCSSIEVNGTVCEFVTGDRSYALEEDIMFLL 513



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 124/443 (27%), Positives = 228/443 (51%), Gaps = 27/443 (6%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           S ++  LL +K  T++ + QI + +  T  +K+ +   K+++  + S       +A  +F
Sbjct: 10  SKKTISLLDQKGLTISQLKQIQSHLTVTATLKDPYAAAKIISLHAHSNARSSLFYAERLF 69

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL 132
                  + K  F+WN +++ +    +   A  ++  ML++    + F+ S V++AC  +
Sbjct: 70  LCL----QNKSTFIWNTMMQAFVEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACIDV 125

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
             ++ GL  HG + K  + S  F+QN LI LY  CG+++ AR +FD    RD V++  +I
Sbjct: 126 FNLQMGLCFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTCLI 185

Query: 193 DGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQL---KSGLQFAWQIFEKMPERD 249
            GY+ SG +  ARELFD MP  E+N +SW +++ GY ++   K  L+  + +       +
Sbjct: 186 SGYLNSGQVLIARELFDRMP--EKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLN 243

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFD 305
             S    L  C   G +D  + +   + +     D +    +ID YAK G +++A  +FD
Sbjct: 244 RASIVGALTACAFLGALDQGRWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFD 303

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
           EM  RDV A   ++ G   +  S  A+++F+ MQ E  + P++ + V VL+A +++G +D
Sbjct: 304 EMDDRDVYAFTCLISGLANHDKSEAAIDLFNRMQDEGVV-PNEVTFVCVLNACSRMGMVD 362

Query: 366 KGVAI-----HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH-WNA 419
           +G+ I     +RY+ + Q     +H   L+D+  + G IE A +V  ++      +   A
Sbjct: 363 EGLRIFESMSNRYVIEPQI----QHYGCLVDLLGRAGKIEEAKQVVREMPLQPDSYTLGA 418

Query: 420 MINGLAIHG---LGELAFDLLME 439
           +++   +HG   LGE   D L++
Sbjct: 419 LLDACRVHGDVQLGEEMVDSLVQ 441


>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
 gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 201/611 (32%), Positives = 320/611 (52%), Gaps = 53/611 (8%)

Query: 20  LLRKCKTLNDVNQIHARMITTG-FIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAF 78
           LL  CK    V QIHA +ITTG F  N++    ++AS++      +T  AR++F K    
Sbjct: 13  LLLACKDEAPVTQIHALIITTGLFFANSNFNGLVIASYAR--IGGITS-ARHLFDKL--- 66

Query: 79  REKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
             ++    WNA+I  YS      E L ++  M++ G   D  + ++ +KA S L  +E G
Sbjct: 67  -PQRGVDAWNAMIVAYSRRYHLTEVLNLYHQMVNEGGKPDSSTFTVAIKASSSLKDLEAG 125

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
            +I        +G D+F+ + +++LYV+C                               
Sbjct: 126 ERIWRRAVDFGYGCDVFVGSSVLNLYVKC------------------------------- 154

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLISWN 254
           G I+ A+ +FD M   +R+++ W +++ G  Q  + L+ A  +F +M     E D +   
Sbjct: 155 GKIDEAKLVFDKMV--KRDVVCWATMITGLVQNGNVLE-AVDMFRRMRKEGIEGDGVLML 211

Query: 255 SMLHGCVKCGKMD-----DAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
            ++  C   G++         A+  +M   DV+   +++D YAK+G +++A R+F++MP+
Sbjct: 212 GLVQACANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLELASRVFEQMPR 271

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           ++ V+  A++ G+ +NG++  AL++   MQ  L   PD A LV  L A +Q+GH+  G +
Sbjct: 272 KNAVSWGALISGFAQNGFAEYALDLLVEMQ-SLEFKPDTAVLVSALLACSQVGHLKLGKS 330

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
           IH Y+ + +       G ALIDMY+KCGS+  A  +F++++   V  WN MI    IHG 
Sbjct: 331 IHGYIVR-RLGFELVLGTALIDMYAKCGSLSCAHAIFDRVDSRDVILWNTMIASYGIHGD 389

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
           G+    L ++M+  +I PD  TF  LL+A +H+G V  G   F  M    K+ P  +HY 
Sbjct: 390 GKEVLSLFLKMKEANISPDHATFASLLSALSHSGQVDVGQYWFNAMVNECKIPPSEKHYA 449

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549
           CMVD+  RAG +E A  LIE M  EP   IW  LLS C NY NL  GE  AK ++ ++  
Sbjct: 450 CMVDLFSRAGRVEEAYQLIESMNTEPGLAIWVALLSGCHNYRNLLFGEVAAKKILDLNPD 509

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQ 609
           +   Y L+SN F+   MW+    +R +MKE  +KK+PG S +E+ G    F V DK+  Q
Sbjct: 510 DLGIYALVSNFFSLARMWDRVSILRKIMKETGMKKVPGYSAVEVNGKHEAFLVEDKNHHQ 569

Query: 610 VRDIYYMLDNM 620
             +I  MLD++
Sbjct: 570 YEEILQMLDSL 580


>gi|125550574|gb|EAY96283.1| hypothetical protein OsI_18181 [Oryza sativa Indica Group]
          Length = 661

 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 175/503 (34%), Positives = 267/503 (53%), Gaps = 37/503 (7%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN 217
            C++S Y R G ++ AR+LFD M  R+  S+ +M+ GY  +G +  ARE+FD MP  ERN
Sbjct: 158 TCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTTMVQGYAHNGMLREAREMFDKMP--ERN 215

Query: 218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP 277
           +++W  ++  Y      +Q A ++F +MP+ +  SWN+M  G +  GK+DDA  LFDKMP
Sbjct: 216 VVAWTVMVKAYVD-NGCIQEALELFNRMPQMNSYSWNAMATGLMSAGKVDDAVQLFDKMP 274

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
            ++VVSW  M+ G A+ G V  AR  FD MPK+D+ A N+M+  Y  +G    A  +FD 
Sbjct: 275 HKNVVSWTIMVTGLAQNGFVSRAREFFDRMPKKDIPAWNSMITAYTNDGQVNDAQRLFDI 334

Query: 338 MQCE-----------------------LYL-------HPDDASLVIVLSAIAQLGHIDKG 367
           M  +                       L+L        PD  +L+ VL        + + 
Sbjct: 335 MPSKNLVTWNIIIDGYSMNNLKDEALRLFLLMLRSAVSPDSTTLISVLVVSESTMEVRQ- 393

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
             IH    K  +      G  L+ MYS+ G + +A   F ++ +     W +MI  LA H
Sbjct: 394 --IHGLSTKLGYQPETNLGNTLVSMYSRSGDLSSAWLAFRRLNEKDAITWTSMIQALANH 451

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           G    A     +M R   +P   TFT +L+AC H GLV++G   F+ +  ++ LEP ++H
Sbjct: 452 GCAPCALQGFAQMLRCGYKPSSTTFTAVLSACNHVGLVEKGRKIFKSISHVYGLEPTIEH 511

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           Y C+VD+LGRAG++  A+ +++ M  +  ++ I  TLL +C  +  + VG  V + L+ +
Sbjct: 512 YSCLVDLLGRAGYVREAKEVVDGMQRDMCDEAILGTLLGSCMTHNEVEVGRAVGEDLVKI 571

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           D S S  Y LL+N+FA  GMWN+   V  +MK   +KK PG S IE+    H F+ RD+ 
Sbjct: 572 DPSGSGGYTLLANVFASGGMWNEVASVWKIMKGSKVKKTPGFSQIEVNARNHVFYSRDQM 631

Query: 607 RLQVRDIYYMLDNMWTPDSVATS 629
             Q  +IY ML++   P    +S
Sbjct: 632 HSQRTEIYEMLNSRLVPQMKGSS 654



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 194/390 (49%), Gaps = 53/390 (13%)

Query: 176 LFDKMGIRD-SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG 234
           +FD M  RD +V+Y +M+  ++   ++  A  L+ + P   R +     +L+GY  +K+G
Sbjct: 80  MFDGMPRRDDAVAYAAMVGIHLWDRDLPHAEALYRAAPPDCRGIHLDTVMLDGY--VKAG 137

Query: 235 -LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAK 293
            +  A ++F+ M  +++++W  M+ G  + G +D+A+ LFD MP R+V SW  M+ GYA 
Sbjct: 138 QVDRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTTMVQGYAH 197

Query: 294 LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM-QCELY--------- 343
            G +  AR +FD+MP+R+VVA   M+  YV NG   +ALE+F+ M Q   Y         
Sbjct: 198 NGMLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELFNRMPQMNSYSWNAMATGL 257

Query: 344 ----------------LHPDDASLVIVLSAIAQLGHIDKGVA-IHRYLEKDQFSLNGKHG 386
                            H +  S  I+++ +AQ G + +      R  +KD  + N    
Sbjct: 258 MSAGKVDDAVQLFDKMPHKNVVSWTIMVTGLAQNGFVSRAREFFDRMPKKDIPAWN---- 313

Query: 387 VALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE 446
            ++I  Y+  G + +A ++F+ +   ++  WN +I+G +++ L + A  L + M R ++ 
Sbjct: 314 -SMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKDEALRLFLLMLRSAVS 372

Query: 447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL------EPELQHYGCMVDILGRAGH 500
           PD  T   +L       +V E  +    +R+IH L      +PE      +V +  R+G 
Sbjct: 373 PDSTTLISVL-------VVSESTM---EVRQIHGLSTKLGYQPETNLGNTLVSMYSRSGD 422

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSACRNY 530
           + +A      +  E + + W +++ A  N+
Sbjct: 423 LSSAWLAFRRLN-EKDAITWTSMIQALANH 451



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 130/333 (39%), Gaps = 66/333 (19%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           K+   WN II  YS      EAL +F LML + VS D  +   VL          E  QI
Sbjct: 338 KNLVTWNIIIDGYSMNNLKDEALRLFLLMLRSAVSPDSTTLISVLVVSES---TMEVRQI 394

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           HGL  K+ +  +  L N L+S+Y R G L  A   F ++  +D++++ SMI      G  
Sbjct: 395 HGLSTKLGYQPETNLGNTLVSMYSRSGDLSSAWLAFRRLNEKDAITWTSMIQALANHGCA 454

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQ-LKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
             A                    L G+AQ L+ G + +   F            ++L  C
Sbjct: 455 PCA--------------------LQGFAQMLRCGYKPSSTTF-----------TAVLSAC 483

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
              G ++  + +F  +    V      I+ Y+ L  VD+  R                  
Sbjct: 484 NHVGLVEKGRKIFKSISH--VYGLEPTIEHYSCL--VDLLGR-----------------A 522

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           GYVR     +A E+ D MQ ++    D+A L  +L +      ++ G A+   L K    
Sbjct: 523 GYVR-----EAKEVVDGMQRDMC---DEAILGTLLGSCMTHNEVEVGRAVGEDLVK--ID 572

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
            +G  G  L+      G + N +    +I  GS
Sbjct: 573 PSGSGGYTLLANVFASGGMWNEVASVWKIMKGS 605



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 18/175 (10%)

Query: 13  STQSTLLL--LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY 70
           S  ST L+  L   ++  +V QIH      G+   T+L   LV+ +S S           
Sbjct: 372 SPDSTTLISVLVVSESTMEVRQIHGLSTKLGYQPETNLGNTLVSMYSRSG---------D 422

Query: 71  IFFKYHAFRE--KKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           +   + AFR   +KD   W ++I+  + HG  P  AL  F  ML  G      + + VL 
Sbjct: 423 LSSAWLAFRRLNEKDAITWTSMIQALANHGCAPC-ALQGFAQMLRCGYKPSSTTFTAVLS 481

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQ--NCLISLYVRCGYLEFARQLFDKM 180
           AC+ +GL+E+G +I   +  V +G +  ++  +CL+ L  R GY+  A+++ D M
Sbjct: 482 ACNHVGLVEKGRKIFKSISHV-YGLEPTIEHYSCLVDLLGRAGYVREAKEVVDGM 535



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 121/285 (42%), Gaps = 29/285 (10%)

Query: 303 LFDEMPKR-DVVACNAMMGGYV--RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           +FD MP+R D VA  AM+G ++  R+    +AL       C   +H D     ++L    
Sbjct: 80  MFDGMPRRDDAVAYAAMVGIHLWDRDLPHAEALYRAAPPDCR-GIHLD----TVMLDGYV 134

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
           + G +D+     R L       N      ++  Y + G ++ A ++F+ +   +V  W  
Sbjct: 135 KAGQVDRA----RRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTT 190

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           M+ G A +G+   A ++  +M   ++    + +T ++ A    G ++E L  F  M    
Sbjct: 191 MVQGYAHNGMLREAREMFDKMPERNV----VAWTVMVKAYVDNGCIQEALELFNRM---- 242

Query: 480 KLEPELQHYG--CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
              P++  Y    M   L  AG ++ A  L + MP + N V W  +++       ++   
Sbjct: 243 ---PQMNSYSWNAMATGLMSAGKVDDAVQLFDKMPHK-NVVSWTIMVTGLAQNGFVSRAR 298

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
                +   D    +S +     +   G  NDA+R+  +M  +NL
Sbjct: 299 EFFDRMPKKDIPAWNSMI---TAYTNDGQVNDAQRLFDIMPSKNL 340


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 163/375 (43%), Positives = 237/375 (63%), Gaps = 2/375 (0%)

Query: 241 IFEKMPER-DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDI 299
           + EK+  R +L   N ++H    CG+M +A+ LF+KMP+RDVV+W  MI    K G  + 
Sbjct: 153 VVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEG 212

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           A  LF  MP+R+V +  +M+ GYV+ G + +A+ +F  M+ E  +  ++ ++V VL+A A
Sbjct: 213 AYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKME-EAGVKCNEVTVVAVLAACA 271

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
            LG +D G+ IH Y  +  F  N +    LIDMY KCG +E A KVFE++E+ +V  W+A
Sbjct: 272 DLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSA 331

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           MI GLA+HG  E A  L  +M ++ IEP+ +TF GLL+AC+H GL+ EG   F  M R +
Sbjct: 332 MIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDY 391

Query: 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPV 539
            + P+++HYGCMVD+L RAG +  A   I +MPM+PN V+W  LL ACR ++N+ + E  
Sbjct: 392 GIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEA 451

Query: 540 AKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHE 599
            KHL+ +D  N   YV+LSN++A  G W D  RVR  MK+R +KK PG S I ++GVVHE
Sbjct: 452 IKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHE 511

Query: 600 FFVRDKSRLQVRDIY 614
           F   ++S      I+
Sbjct: 512 FVAGEESHPDTEQIF 526



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 145/480 (30%), Positives = 249/480 (51%), Gaps = 35/480 (7%)

Query: 4   SANYNQ-----PCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTK--LVASF 56
           S N NQ     P +S    + LLR   +  ++ Q+HA++I T    +    T+  LV +F
Sbjct: 13  SPNRNQIHNVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAF 72

Query: 57  SSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVS 116
                TP   +A+ IF      ++K + F+WN+ +K  + G  P +A+++F  +    V 
Sbjct: 73  -----TPSFHYAQQIFKCVE--KQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVC 125

Query: 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQL 176
            D F+ S VL+AC  L  +  G  +HG++ KV F S+L+LQN ++ LY  CG +  AR L
Sbjct: 126 PDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLL 185

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQ 236
           F+KM  RD V++N MI   +K G+ E A +LF  MP  ERN+ SW S++ GY Q     +
Sbjct: 186 FEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMP--ERNVRSWTSMIAGYVQCGKAKE 243

Query: 237 FAWQIFEKMPERDL----ISWNSMLHGCVKCGKMDDAQALFDKMP----KRDVVSWANMI 288
            A  +F KM E  +    ++  ++L  C   G +D    + +       KR+V     +I
Sbjct: 244 -AIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLI 302

Query: 289 DGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD 348
           D Y K G ++ A ++F+EM +R VV+ +AM+GG   +G + +AL +F +M  ++ + P+ 
Sbjct: 303 DMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMS-QVGIEPNG 361

Query: 349 ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG-KHGVALIDMYSKCGSIENAIKVFE 407
            + + +L A + +G I +G      + +D   +   +H   ++D+ S+ G +  A +   
Sbjct: 362 VTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFIL 421

Query: 408 QI---EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP-DDITFTGLLNACAHAG 463
            +    +G V  W A++    +H   E+A + +  +  L ++P +D  +  L N  A AG
Sbjct: 422 NMPMKPNGVV--WGALLGACRVHKNVEMAEEAIKHL--LELDPLNDGYYVVLSNIYAEAG 477


>gi|225428117|ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial [Vitis vinifera]
          Length = 681

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 186/549 (33%), Positives = 305/549 (55%), Gaps = 40/549 (7%)

Query: 68  ARYIFFKYHAFRE--KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
            R++    H F E  ++D   WN +I  Y+      EAL +F  M +  V     S + +
Sbjct: 144 GRWVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLFDSMQERNV----VSWNAM 199

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           +    + G +E  ++    + +     D    + L++  ++ G L+ A+++      +D 
Sbjct: 200 VTGFLQNGDVERAIEFFMRMPE----RDSASLSALVAGLIQNGELDEAKRILLTSRRQDD 255

Query: 186 V------SYNSMIDGYVKSGNIESARELFDSMPIR----------ERNLISWNSVLNGYA 229
                  +YN ++ GY ++G ++ AR+LFD +P            ERN++SWNS++  Y 
Sbjct: 256 DKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYV 315

Query: 230 QLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMID 289
           + +     A  +F++M ERD ISWN+M+ G V+   M++A  LF +MP  D ++W +MI 
Sbjct: 316 KARDIFS-ARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMIS 374

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM--QCELYLHPD 347
           G+A+ G +++AR LF  +P++++V+ N+M+ GY  NG    A E++  M  Q E    PD
Sbjct: 375 GFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGE---KPD 431

Query: 348 DASLVIVLSAIAQLGHIDKGVAIHRYLEKD---QFSLNGKHGVALIDMYSKCGSIENAIK 404
             +L  VLS  +    +  G+ IH+ + K       +N     +LI MYS+CG+I  A  
Sbjct: 432 RHTLSSVLSVCSGFAALHLGMQIHQQITKTVIPDIPINN----SLITMYSRCGAIVEART 487

Query: 405 VFEQIE-DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAG 463
           +F++++    V  WNAMI G A HG    A +L   M+RL + P  ITF  +LNACAHAG
Sbjct: 488 IFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHAG 547

Query: 464 LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTL 523
            VKEG + F+ M     +EP ++H+  +VDI+GR G +E A +LI  MP EP+  +W  L
Sbjct: 548 FVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSMPFEPDKAVWGAL 607

Query: 524 LSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583
           L ACR + N+ +    A+ L+ ++  +S+ YVLL NM+A +G W++A  +R MM+  N++
Sbjct: 608 LGACRVHNNVELARVAAEALMKLEPESSAPYVLLHNMYADVGQWDNATEMRMMMERNNIR 667

Query: 584 KLPGCSWIE 592
           K PG SW++
Sbjct: 668 KQPGYSWVD 676



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 154/512 (30%), Positives = 246/512 (48%), Gaps = 60/512 (11%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           DL+  N  IS  +R G +  AR LFD M  R+ V++NSMI GYV+   +  AR+LFD MP
Sbjct: 66  DLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMP 125

Query: 213 IRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQA 271
             +R+++SWN +++GY   +   ++    +F++MPERD +SWN+M+ G  + G+MD+A  
Sbjct: 126 --DRDVVSWNLMISGYVSCQGRWVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQ 183

Query: 272 LFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKA 331
           LFD M +R+VVSW  M+ G+ + G V+ A   F  MP+RD  + +A++ G ++NG   +A
Sbjct: 184 LFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQNGELDEA 243

Query: 332 LEIFDNMQCELYLHPDDASLV----IVLSAIAQLGHIDKGVAIHRYL------EKD--QF 379
             I    + +     D   LV    I+L+   Q G +DK   +   +      +KD  +F
Sbjct: 244 KRILLTSRRQ---DDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRF 300

Query: 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLME 439
             N     ++I  Y K   I +A  +F+Q+++     WN MI+G       E A+ L  E
Sbjct: 301 ERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQE 360

Query: 440 MERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE--LQHYGCMVDILGR 497
           M      PD +T+  +++  A  G         EL R +    P+  L  +  M+     
Sbjct: 361 MP----NPDTLTWNSMISGFAQKG-------NLELARALFATIPQKNLVSWNSMIAGYEN 409

Query: 498 AGHIEAARNLIEDMPME---PNDVIWRTLLSACRNYENLNVG----EPVAKHLIGMDSSN 550
            G  + A  L   M ++   P+     ++LS C  +  L++G    + + K +I     N
Sbjct: 410 NGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVIPDIPIN 469

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSW-IELEGVVHEFFVRDK---- 605
           +S    L  M++  G   +A   R++  E  L+K    SW   + G     F  D     
Sbjct: 470 NS----LITMYSRCGAIVEA---RTIFDEVKLQK-EVISWNAMIGGYAFHGFAADALELF 521

Query: 606 ---SRLQVRDIYYMLDNMWTPDSVATSCTHYG 634
               RL+VR  Y       T  SV  +C H G
Sbjct: 522 ELMKRLKVRPTYI------TFISVLNACAHAG 547


>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Vitis vinifera]
          Length = 573

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 172/466 (36%), Positives = 275/466 (59%), Gaps = 15/466 (3%)

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRER---NLISWNSVLN 226
           L +AR +FD +   +   Y +MI  Y    +  SA  L+ +M  R R   N   +  VL 
Sbjct: 104 LSYARFIFDHVESPNVYLYTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHVLK 163

Query: 227 GYAQL---KSGLQFAWQIFEKMPERDLISWNSMLHGCVK-CGKMDDAQALFDKMPKRDVV 282
              Q+    S      Q+     E+  +   ++L   ++    ++ A+ LFD+M +R+VV
Sbjct: 164 SCTQVVGPGSARMVHCQVLRSGFEQYPVVQTALLDAYLRFWSDVESARLLFDEMTERNVV 223

Query: 283 SWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM---Q 339
           SW  MI GY +LG++  A  LF+EMP+RDV + NA++ GY +NG  M+AL +F  M   +
Sbjct: 224 SWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVE 283

Query: 340 CELYLH---PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC 396
              +     P+  + V  LSA    G +  G  IH Y+ ++   L+     AL+DMY KC
Sbjct: 284 AGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFVSNALVDMYGKC 343

Query: 397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS--IEPDDITFTG 454
           G ++ A +VF++  + S+  WN+MIN LA+HG  + A  +  EM      ++PD++TF G
Sbjct: 344 GCLKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEMMTCGSGVKPDEVTFIG 403

Query: 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPME 514
           LLNAC H GLV++G L FELM + + +EP+++HYGC+VD+LGRAG  E A  ++  M +E
Sbjct: 404 LLNACTHGGLVEKGWLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRGMRIE 463

Query: 515 PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVR 574
           P++VIW +LL+ C+ + + ++ E   K LI MD +N    ++L+N++  LG W++ R+VR
Sbjct: 464 PDEVIWGSLLNGCKIHGHTDLAEFSIKKLIDMDPNNGGYGIMLANIYGELGKWDEVRKVR 523

Query: 575 SMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            ++KE+N  K PGCSWIE++  VH+F+  DK+  +  +IY  L+++
Sbjct: 524 KVLKEQNAHKTPGCSWIEIDNQVHQFYSVDKTHPRTEEIYNTLESL 569



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 128/456 (28%), Positives = 219/456 (48%), Gaps = 38/456 (8%)

Query: 12  NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
           N   S L LL +C  LN + Q+ A +IT G  + TH     +  F +   + L+ +AR+I
Sbjct: 53  NLNNSVLALLERCIHLNHLKQLQAFLITLGHAQ-THFYAFKLLRFCTLALSNLS-YARFI 110

Query: 72  FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVS-VDKFSASLVLKACS 130
           F       E  + +L+ A+I  Y+   D   AL+++  M+       + F    VLK+C+
Sbjct: 111 FDHV----ESPNVYLYTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHVLKSCT 166

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVR-CGYLEFARQLFDKMGIRDSVSYN 189
           ++        +H  + +  F     +Q  L+  Y+R    +E AR LFD+M  R+ VS+ 
Sbjct: 167 QVVGPGSARMVHCQVLRSGFEQYPVVQTALLDAYLRFWSDVESARLLFDEMTERNVVSWT 226

Query: 190 SMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF-AWQIFEKMPER 248
           +MI GY + G I +A  LF+ MP  ER++ SWN+++ GY Q  +GL   A  +F +M   
Sbjct: 227 AMISGYTRLGQIGNAVLLFEEMP--ERDVPSWNALIAGYTQ--NGLFMEALSLFRRMIAV 282

Query: 249 DLISWNS-----------MLHGC-----VKCGKMDDAQALFDKMPKRDVVSWANMIDGYA 292
           +  +W              L  C     ++ GK        + +     VS A ++D Y 
Sbjct: 283 EAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFVSNA-LVDMYG 341

Query: 293 KLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN-MQCELYLHPDDASL 351
           K G +  ARR+FD   +R + + N+M+     +G S  A+ +F+  M C   + PD+ + 
Sbjct: 342 KCGCLKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEMMTCGSGVKPDEVTF 401

Query: 352 VIVLSAIAQLGHIDKGVAIHRYLEKDQ-FSLNGKHGVALIDMYSKCGSIENAIKVFE--Q 408
           + +L+A    G ++KG      + ++       +H   L+D+  + G  E A++V    +
Sbjct: 402 IGLLNACTHGGLVEKGWLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRGMR 461

Query: 409 IEDGSVDHWNAMINGLAIHG---LGELAFDLLMEME 441
           IE   V  W +++NG  IHG   L E +   L++M+
Sbjct: 462 IEPDEVI-WGSLLNGCKIHGHTDLAEFSIKKLIDMD 496



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 122/260 (46%), Gaps = 25/260 (9%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLML-------DNGVSVDKFSASLVLKACSRLG 133
           ++D   WNA+I  Y+      EAL +F  M+         G   ++ +A   L AC   G
Sbjct: 250 ERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSACGHTG 309

Query: 134 LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMID 193
           ++  G  IHG + +   G D F+ N L+ +Y +CG L+ AR++FD+   R   S+NSMI+
Sbjct: 310 MLRLGKWIHGYVYRNGLGLDSFVSNALVDMYGKCGCLKEARRVFDRTLERSLTSWNSMIN 369

Query: 194 GYVKSGNIESARELFDSMPI----RERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPER 248
                G  ++A  +F+ M       + + +++  +LN  A    GL +  W  FE M + 
Sbjct: 370 CLALHGQSQNAISVFEEMMTCGSGVKPDEVTFIGLLN--ACTHGGLVEKGWLYFELMTQN 427

Query: 249 DLISWNSMLHGCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIARR 302
             I      +GC+     + G+ ++A  +   M  + D V W ++++G    G  D+A  
Sbjct: 428 YGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRGMRIEPDEVIWGSLLNGCKIHGHTDLA-- 485

Query: 303 LFDEMPKRDVVACNAMMGGY 322
              E   + ++  +   GGY
Sbjct: 486 ---EFSIKKLIDMDPNNGGY 502


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 182/561 (32%), Positives = 304/561 (54%), Gaps = 41/561 (7%)

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           A+Y    +H      + FL+N +I+          A+ ++  M    +  D F+ S VLK
Sbjct: 53  AQYPILVFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLK 112

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           AC+RL L   G+ IH L+ K  F  D+F++  ++  Y +CG+L            RD   
Sbjct: 113 ACARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFL------------RD--- 157

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNG---YAQLKSGLQFAWQIFEK 244
                           A ++FD M ++  N++SW  ++ G   + + +  +     + E 
Sbjct: 158 ----------------AWKVFDDMVVK--NVVSWTGMICGCIEFGKFREAVDLFRGLLES 199

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIA 300
               D      +L  C + G ++  + +   M +    R+V    +++D Y K G ++ A
Sbjct: 200 GLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEA 259

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
           R +FD M ++D+V  +AM+ GY  NG   +A+E+F  M+ ++ + PD  ++V  LS+ A 
Sbjct: 260 RFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMR-KVNVRPDCYAMVGALSSCAS 318

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
           LG ++ G      +  ++F  N   G +LID Y+KCGS+E A+ V++ +++     +NA+
Sbjct: 319 LGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAV 378

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           I+GLA++G    AF +  +M +  I P++ TF GLL  C HAGLV +G   F  M     
Sbjct: 379 ISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFS 438

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           + P ++HYGCMVD+L RAG ++ A NLI+ MPM+ N ++W +LL  CR +    + E V 
Sbjct: 439 VTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVL 498

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
           K LI ++  NS  YVLLSN+++    W++A ++RS + E+ ++KLPG SW+E++GVVHEF
Sbjct: 499 KQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVDGVVHEF 558

Query: 601 FVRDKSRLQVRDIYYMLDNMW 621
            V D S    + IY  L++++
Sbjct: 559 LVGDTSHPLSQKIYEKLESLF 579


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 203/705 (28%), Positives = 342/705 (48%), Gaps = 119/705 (16%)

Query: 21  LRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           LR C  L   +   Q+H+++I  GF  +T +   L+  ++   C    E    +F +   
Sbjct: 283 LRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAK--CDD-EESCLKVFDEMG- 338

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
              +++   WN+II   +      +ALV+F  M ++G   ++F+   +L A + L  I +
Sbjct: 339 ---ERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGK 395

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G ++HG L +    SD+ L + L+ +Y +CG +E A Q+F  +  R+ VSYN+++ GYV+
Sbjct: 396 GRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQ 455

Query: 198 SGNIESARELFDSMPIRE--------------------------------------RNLI 219
            G  E A EL+  M   +                                      +N+I
Sbjct: 456 EGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNII 515

Query: 220 SWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP-- 277
               +++ Y++    L +A +IF +M ER+  SWNSM+ G  + G+  +A  LF +M   
Sbjct: 516 VETELVHMYSECGR-LNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLN 574

Query: 278 --KRDVVSWANM-----------------------------------IDGYAKLGRVDIA 300
             K D  S ++M                                   +D YAK G +D A
Sbjct: 575 GIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYA 634

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQ--------------------- 339
            +++D+  K+DV+  N M+  +V +G +  A  +FD M+                     
Sbjct: 635 WKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKK 694

Query: 340 ---------CELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF-SLNGKHGVAL 389
                     E  +  D  ++V +++  + L  ++ G  +H  + K  F + +     AL
Sbjct: 695 ESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETAL 754

Query: 390 IDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD 449
           +DMYSKCG+I  A  VF+ +   ++  WNAMI+G + HG  + A  L  EM +  + P++
Sbjct: 755 VDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNE 814

Query: 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE 509
           +TF  +L+AC+H GLV+EGL  F  M+  + +E + +HY CMVD+LGRAG +E A+  +E
Sbjct: 815 VTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVE 874

Query: 510 DMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWND 569
            MP+EP    W  LL ACR ++++++G   A+ L  +D  N   YV++SN++A  G W +
Sbjct: 875 KMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKE 934

Query: 570 ARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
              +R MMK + +KK PG SWIE+   +  F    K+  +  +IY
Sbjct: 935 VEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIY 979



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 139/589 (23%), Positives = 273/589 (46%), Gaps = 86/589 (14%)

Query: 20  LLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           L++ C   N   +   IH +MI+ G+  + +L TK++  ++ S C     +AR +F +  
Sbjct: 77  LIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEM- 135

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
               +++   WN +I  Y+   D  E L ++  M  +G   DKF+   V+KAC  +  + 
Sbjct: 136 ---PERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMG 192

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
              Q+   + K     +LF+   L+  Y R G+++ A    D++     V++N++I GYV
Sbjct: 193 GVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYV 252

Query: 197 KSGNIESARELFDSM--------------------PIRERN--------LIS-------- 220
           K  + E A  +FD M                     +R R+        LI+        
Sbjct: 253 KILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTF 312

Query: 221 -WNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR 279
             N++++ YA+     +   ++F++M ER+ ++WNS++    + G  +DA  LF +M + 
Sbjct: 313 VGNALIDMYAKCDDE-ESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQES 371

Query: 280 ---------------------------------------DVVSWANMIDGYAKLGRVDIA 300
                                                  D++  + ++D Y+K G V+ A
Sbjct: 372 GYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEA 431

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
            ++F  + +R+ V+ NA++ GYV+ G + +ALE++ +MQ E  + PD  +   +L+  A 
Sbjct: 432 HQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCAN 491

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
             + ++G  IH +L +   + N      L+ MYS+CG +  A ++F ++ + +   WN+M
Sbjct: 492 QRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSM 551

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           I G   +G  + A  L  +M+   I+PD  + + +L++C      ++G      + R + 
Sbjct: 552 IEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVR-NT 610

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRN 529
           +E E      +VD+  + G ++ A   + D  ++ + ++   ++SA  N
Sbjct: 611 MEEEGILQVVLVDMYAKCGSMDYAWK-VYDQTIKKDVILNNVMVSAFVN 658



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 120/510 (23%), Positives = 212/510 (41%), Gaps = 79/510 (15%)

Query: 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLE---FA 173
           V+    S +++ C      + G  IH  +    +  D +L   ++ LY R G L+   +A
Sbjct: 69  VNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYA 128

Query: 174 RQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKS 233
           R+LF++M  R+  ++N+MI  Y +  +                    +  VL  Y +++ 
Sbjct: 129 RKLFEEMPERNLTAWNTMILAYARVDD--------------------YMEVLRLYGRMRG 168

Query: 234 GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMID 289
              F+          D  ++ S++  C+    M   + L   + K     ++     ++D
Sbjct: 169 SGNFS----------DKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVD 218

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
           GYA+ G +D A    DE+    VV  NA++ GYV+     +A  IFD M  ++ + PD+ 
Sbjct: 219 GYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRM-LKIGVCPDNF 277

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           +    L     L   D G  +H  L    F  +   G ALIDMY+KC   E+ +KVF+++
Sbjct: 278 TFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEM 337

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
            + +   WN++I+  A  G    A  L + M+    + +      +L A A    + +G 
Sbjct: 338 GERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGR 397

Query: 470 -LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA-- 526
            L   L+R +  L  ++     +VD+  + G +E A  +   + +E N+V +  LL+   
Sbjct: 398 ELHGHLVRNL--LNSDIILGSALVDMYSKCGMVEEAHQVFRSL-LERNEVSYNALLAGYV 454

Query: 527 ----------------------------------CRNYENLNVGEPVAKHLIGMD-SSNS 551
                                             C N  N N G  +  HLI  + + N 
Sbjct: 455 QEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNI 514

Query: 552 SSYVLLSNMFAGLGMWNDARRVRSMMKERN 581
                L +M++  G  N A+ + + M ERN
Sbjct: 515 IVETELVHMYSECGRLNYAKEIFNRMAERN 544


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 163/375 (43%), Positives = 237/375 (63%), Gaps = 2/375 (0%)

Query: 241 IFEKMPER-DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDI 299
           + EK+  R +L   N ++H    CG+M +A+ LF+KMP+RDVV+W  MI    K G  + 
Sbjct: 153 VVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEG 212

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           A  LF  MP+R+V +  +M+ GYV+ G + +A+ +F  M+ E  +  ++ ++V VL+A A
Sbjct: 213 AYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKME-EAGVKCNEVTVVAVLAACA 271

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
            LG +D G+ IH Y  +  F  N +    LIDMY KCG +E A KVFE++E+ +V  W+A
Sbjct: 272 DLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSA 331

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           MI GLA+HG  E A  L  +M ++ IEP+ +TF GLL+AC+H GL+ EG   F  M R +
Sbjct: 332 MIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDY 391

Query: 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPV 539
            + P+++HYGCMVD+L RAG +  A   I +MPM+PN V+W  LL ACR ++N+ + E  
Sbjct: 392 GIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEA 451

Query: 540 AKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHE 599
            KHL+ +D  N   YV+LSN++A  G W D  RVR  MK+R +KK PG S I ++GVVHE
Sbjct: 452 IKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHE 511

Query: 600 FFVRDKSRLQVRDIY 614
           F   ++S      I+
Sbjct: 512 FVAGEESHPDTEQIF 526



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 145/480 (30%), Positives = 249/480 (51%), Gaps = 35/480 (7%)

Query: 4   SANYNQ-----PCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTK--LVASF 56
           S N NQ     P +S    + LLR   +  ++ Q+HA++I T    +    T+  LV +F
Sbjct: 13  SPNRNQIHHVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAF 72

Query: 57  SSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVS 116
                TP   +A+ IF      ++K + F+WN+ +K  + G  P +A+++F  +    V 
Sbjct: 73  -----TPSFHYAQQIFECVE--KQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVC 125

Query: 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQL 176
            D F+ S VL+AC  L  +  G  +HG++ KV F S+L+LQN ++ LY  CG +  AR L
Sbjct: 126 PDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLL 185

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQ 236
           F+KM  RD V++N MI   +K G+ E A +LF  MP  ERN+ SW S++ GY Q     +
Sbjct: 186 FEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMP--ERNVRSWTSMIAGYVQCGKAKE 243

Query: 237 FAWQIFEKMPERDL----ISWNSMLHGCVKCGKMDDAQALFDKMP----KRDVVSWANMI 288
            A  +F KM E  +    ++  ++L  C   G +D    + +       KR+V     +I
Sbjct: 244 -AIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLI 302

Query: 289 DGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD 348
           D Y K G ++ A ++F+EM +R VV+ +AM+GG   +G + +AL +F +M  ++ + P+ 
Sbjct: 303 DMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMS-QVGIEPNG 361

Query: 349 ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG-KHGVALIDMYSKCGSIENAIKVFE 407
            + + +L A + +G I +G      + +D   +   +H   ++D+ S+ G +  A +   
Sbjct: 362 VTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFIL 421

Query: 408 QI---EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP-DDITFTGLLNACAHAG 463
            +    +G V  W A++    +H   E+A + +  +  L ++P +D  +  L N  A AG
Sbjct: 422 NMPMKPNGVV--WGALLGACRVHKNVEMAEEAIKHL--LELDPLNDGYYVVLSNIYAEAG 477


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 323/615 (52%), Gaps = 77/615 (12%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   W ++I   +     K+A  +F +M + GV  DK +   +LKAC+    +E+G +
Sbjct: 268 RRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKR 327

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  +++V   +++++   L+S+Y +CG +E A ++F+ +  R+ VS+ +MI G+ + G 
Sbjct: 328 VHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGR 387

Query: 201 IESARELFDSMPIR--ERNLISWNSVLNGYAQ---LKSGLQF------------------ 237
           +E A   F+ M     E N +++ S+L   ++   LK G Q                   
Sbjct: 388 MEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTA 447

Query: 238 -------------AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV-- 282
                        A  +FE++ ++++++WN+M+   V+  K D+A A F  + K  +   
Sbjct: 448 LLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPD 507

Query: 283 --------------------SWAN-----------------MIDGYAKLGRVDIARRLFD 305
                                W                   ++  +   G +  A  LF+
Sbjct: 508 SSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFN 567

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
           +MP+RD+V+ N ++ G+V++G +  A + F  MQ E  + PD  +   +L+A A    + 
Sbjct: 568 DMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQ-ESGVKPDQITFTGLLNACASPEALT 626

Query: 366 KGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
           +G  +H  + +     +   G  LI MY+KCGSI++A  VF  +   +V  W +MI G A
Sbjct: 627 EGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYA 686

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL 485
            HG G+ A +L  +M++  ++PD ITF G L+ACAHAGL+KEGL  FE M+  + +EP +
Sbjct: 687 QHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKDFN-IEPRM 745

Query: 486 QHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIG 545
           +HYGCMVD+ GRAG +  A   I  M ++P+  +W  LL AC+ + ++ + E VA+  + 
Sbjct: 746 EHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLE 805

Query: 546 MDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDK 605
           +D ++   YV+LSN++A  GMW +  ++R +M +R + K PG SWIE++G VH F   DK
Sbjct: 806 LDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDK 865

Query: 606 SRLQVRDIYYMLDNM 620
           +  Q+ +I+  L  +
Sbjct: 866 THPQIEEIHAELGRL 880



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 138/530 (26%), Positives = 250/530 (47%), Gaps = 47/530 (8%)

Query: 3   VSANYNQPCNSTQSTLL-LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPC 61
           V + + Q    T S+LL L  K K L D  +IH  +  +    +  +   L++ ++   C
Sbjct: 95  VDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAK--C 152

Query: 62  TPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFS 121
              T  A+ IF +       KD + WN ++  Y      +EA  +   M+ +GV  DK++
Sbjct: 153 GN-TNSAKQIFDEM----PDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYT 207

Query: 122 ASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
              +L AC+    +++G ++  L+    + +DLF+   LI+++++CG ++ A ++F+ + 
Sbjct: 208 FVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLP 267

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVL---NGYAQLKSGLQ 236
            RD +++ SMI G  +    + A  LF  M     + + +++ S+L   N    L+ G +
Sbjct: 268 RRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKR 327

Query: 237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR 296
              ++ E   + ++    ++L    KCG M+DA  +F+ +  R+VVSW  MI G+A+ GR
Sbjct: 328 VHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGR 387

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           ++ A   F++M                                 E  + P+  + + +L 
Sbjct: 388 MEEAFLFFNKM--------------------------------IESGIEPNRVTFMSILG 415

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
           A ++   + +G  IH  + K  +  + +   AL+ MY+KCGS+ +A  VFE+I   +V  
Sbjct: 416 ACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVA 475

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           WNAMI     H   + A      + +  I+PD  TFT +LN C     ++ G     L+ 
Sbjct: 476 WNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLII 535

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           R    E +L     +V +    G + +A NL  DMP E + V W T+++ 
Sbjct: 536 RA-GFESDLHIRNALVSMFVNCGDLMSAMNLFNDMP-ERDLVSWNTIIAG 583



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 136/516 (26%), Positives = 240/516 (46%), Gaps = 59/516 (11%)

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
           F + K+    NA +   S      EA+++   +    + + + + S +L+ C +   + +
Sbjct: 63  FVDIKNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGD 122

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G +IH  ++      D+F+ N LIS+Y +CG    A+Q+FD+M  +D  S+N ++ GYV+
Sbjct: 123 GERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQ 182

Query: 198 SGNIESARELFDSM------PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI 251
               E A  L + M      P +   +   N+  +     K G  F+  I     + DL 
Sbjct: 183 HRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSL-ILNAGWDTDLF 241

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
              ++++  +KCG +DDA  +F+ +P+RD+++W +MI G A+        R F +     
Sbjct: 242 VGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLAR-------HRQFKQ----- 289

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
             ACN                 +F  M+ E  + PD  + V +L A      +++G  +H
Sbjct: 290 --ACN-----------------LFQVME-EEGVQPDKVAFVSLLKACNHPEALEQGKRVH 329

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
             +++         G AL+ MY+KCGS+E+A++VF  ++  +V  W AMI G A HG  E
Sbjct: 330 ARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRME 389

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY--- 488
            AF    +M    IEP+ +TF  +L AC+    +K+G       R+IH    +  +    
Sbjct: 390 EAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQG-------RQIHDRIIKAGYITDD 442

Query: 489 ---GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG----EPVAK 541
                ++ +  + G +  ARN+ E +  + N V W  +++A   +E  +      + + K
Sbjct: 443 RVRTALLSMYAKCGSLMDARNVFERISKQ-NVVAWNAMITAYVQHEKYDNAVATFQALLK 501

Query: 542 HLIGMDSSNSSSY--VLLSNMFAGLGMWNDARRVRS 575
             I  DSS  +S   V  S     LG W  +  +R+
Sbjct: 502 EGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRA 537


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 184/546 (33%), Positives = 294/546 (53%), Gaps = 37/546 (6%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           ++ +  LWN ++  Y    D  ++  +F  ML  GV  +KF+   +L+ C+  G I  G 
Sbjct: 306 DRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGE 365

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           QIH L  K  F SD+++   LI +Y + G+L+ A+++ D +  +D VS+ SMI GYV+  
Sbjct: 366 QIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHE 425

Query: 200 NIESARELFDSMP---IRERN--LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN 254
             + A E F  M    I   N  L S  S   G   +  G Q   +++      D+  WN
Sbjct: 426 FCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWN 485

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
            +++   +CG   +A + F+ +  ++ ++W  +I G+A+ G  + A ++F +M +     
Sbjct: 486 GLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQ----- 540

Query: 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
                 G   N +                      + V  +SA A L  I +G  IH  +
Sbjct: 541 -----AGAKYNVF----------------------TFVSSISASANLADIKQGKQIHARV 573

Query: 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
            K  ++   +   ALI +Y KCGSIE+A   F ++   +   WN +I   + HG G  A 
Sbjct: 574 IKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEAL 633

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
           DL  +M++  ++P D+TF G+L AC+H GLV+EGL  F+ M   H + P   HY C+VDI
Sbjct: 634 DLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDI 693

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           LGRAG ++ A+  +E+MP+  + ++WRTLLSAC+ ++NL +GE  AKHL+ ++  +S+SY
Sbjct: 694 LGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASY 753

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           VLLSN +A  G W    ++R +MK+R ++K PG SWIE++ VVH FFV D+       IY
Sbjct: 754 VLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLADQIY 813

Query: 615 YMLDNM 620
             L ++
Sbjct: 814 NFLSHL 819



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 200/456 (43%), Gaps = 46/456 (10%)

Query: 21  LRKCKTLND----VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           LR C+        V +IHA+ I  G      +   L+  ++          AR +F +  
Sbjct: 48  LRACRGSGRRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKG---FVRRARRVFEELS 104

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
                +D   W A++  Y+     +EA+ ++  M  +GV    +  S +L AC++  L +
Sbjct: 105 V----RDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQ 160

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G  IH  + K  F S+ F+ N LISLY+RC     A ++F  M   DSV++N++I G+ 
Sbjct: 161 LGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHA 220

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
           + G+ + A  +FD M +                   SGL             D ++  S+
Sbjct: 221 QCGHGDRALGIFDEMQL-------------------SGLS-----------PDSVTIASL 250

Query: 257 LHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
           L  C   G +   + L   + K     D +   +++D Y K G ++ A ++FD   + +V
Sbjct: 251 LAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNV 310

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           V  N M+  Y +     K+ +IF  M     + P+  +   +L      G I  G  IH 
Sbjct: 311 VLWNLMLVAYGQIDDLAKSFDIFYRMLAA-GVRPNKFTYPCMLRTCTHTGEIGLGEQIHS 369

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
              K+ F  +      LIDMYSK G ++ A ++ + IE+  V  W +MI G   H   + 
Sbjct: 370 LTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKE 429

Query: 433 AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
           A +   EM+   I PD+I     ++ACA    V +G
Sbjct: 430 ALETFKEMQACGIWPDNIGLASAISACAGIKAVHQG 465



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 131/291 (45%), Gaps = 46/291 (15%)

Query: 25  KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDP 84
           K ++  +QIHAR+  +G+  +  +   LV  ++          ++  F  + A  E K+ 
Sbjct: 460 KAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCG------ISKEAFSSFEAI-EHKEG 512

Query: 85  FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGL 144
             WN +I  ++     +EAL +F  M   G   + F+    + A + L  I++G QIH  
Sbjct: 513 ITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHAR 572

Query: 145 LRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESA 204
           + K  + S+  + N LISLY +CG +E A+  F +M  R+ VS+N++I    + G    A
Sbjct: 573 VIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEA 632

Query: 205 RELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCG 264
            +LFD M                    + GL+         P    +++  +L  C   G
Sbjct: 633 LDLFDQMK-------------------QQGLK---------PSD--VTFVGVLTACSHVG 662

Query: 265 KMDDAQALFDKM-------PKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
            +++    F  M       P+ D   +A ++D   + G++D A+R  +EMP
Sbjct: 663 LVEEGLCYFKSMSNEHGIHPRPD--HYACVVDILGRAGQLDRAKRFVEEMP 711


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 184/546 (33%), Positives = 292/546 (53%), Gaps = 37/546 (6%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           ++ +  LWN ++  Y    D  ++  +F  M   G+  +KF+   +L+ C+  G IE G 
Sbjct: 307 DRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGE 366

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           QIH L  K  F SD+++   LI +Y +   L+ AR++ + +  RD VS+ SMI GYV+  
Sbjct: 367 QIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHD 426

Query: 200 NIESARELFDSMP---IRERN--LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN 254
             E A   F  M    +   N  L S  S   G   ++ GLQ   +++      D+  WN
Sbjct: 427 FCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWN 486

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
           ++                               ++ YA+ GR + A  LF E+  +D + 
Sbjct: 487 TL-------------------------------VNLYARCGRSEEAFSLFREIDHKDEIT 515

Query: 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
            N ++ G+ ++    +AL +F  M  +     +  + +  +SA+A L  I +G  +H   
Sbjct: 516 WNGLISGFGQSRLYEQALMVFMKMS-QAGAKYNVFTFISAISALANLADIKQGKQVHGRA 574

Query: 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
            K   +   +   ALI +Y KCGSIE+A  +F ++   +   WN +I   + HG G  A 
Sbjct: 575 VKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEAL 634

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
           DL  +M++  ++P+D+TF G+L AC+H GLV+EGL  F+ M  ++ L P   HY C+VDI
Sbjct: 635 DLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDI 694

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           LGRAG ++ AR  +++MP+  N +IWRTLLSAC+ ++N+ +GE  AKHL+ ++  +S+SY
Sbjct: 695 LGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASY 754

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           VLLSN +A  G W +  +VR MMK+R ++K PG SWIE++  VH FFV D+       IY
Sbjct: 755 VLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIY 814

Query: 615 YMLDNM 620
             L  +
Sbjct: 815 KFLSEL 820



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 130/503 (25%), Positives = 226/503 (44%), Gaps = 48/503 (9%)

Query: 30  VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNA 89
           V +IHA  +  G   +  +   L+  ++ +    L   AR +F +  +    +D   W A
Sbjct: 62  VLEIHATSVVRGLGADRLIGNLLIDLYAKNG---LVWQARQVFKELSS----RDHVSWVA 114

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA 149
           ++  Y+     KEA  ++  M    V    +  S VL AC++  L  +G  IH  + K A
Sbjct: 115 MLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQA 174

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD 209
           F S+ F+ N LI+LY+  G  + A ++F  M   D V++N++I G+ + G+ E A ++FD
Sbjct: 175 FCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFD 234

Query: 210 SMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDA 269
            M +                   SGL+            D ++  S+L  C   G +   
Sbjct: 235 EMQL-------------------SGLR-----------PDCVTVASLLAACASVGDLQKG 264

Query: 270 QALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
           + L   + K     D ++  +++D Y K G ++ A  +F+   + +VV  N M+  Y + 
Sbjct: 265 KQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQI 324

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
               K+ EIF  MQ    +HP+  +   +L      G I+ G  IH    K+ F  +   
Sbjct: 325 SDLAKSFEIFGQMQAT-GIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYV 383

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
              LIDMYSK   ++ A K+ E +E   V  W +MI G   H   E A     EM+   +
Sbjct: 384 SGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGV 443

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH--KLEPELQHYGCMVDILGRAGHIEA 503
            PD+I      +ACA    +++GL   ++  R++      ++  +  +V++  R G  E 
Sbjct: 444 WPDNIGLASAASACAGIKAMRQGL---QIHARVYVSGYAADISIWNTLVNLYARCGRSEE 500

Query: 504 ARNLIEDMPMEPNDVIWRTLLSA 526
           A +L  ++    +++ W  L+S 
Sbjct: 501 AFSLFREID-HKDEITWNGLISG 522



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 152/336 (45%), Gaps = 56/336 (16%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE--KKDPFLWNA 89
           QIHAR+  +G+  +  +   LV  ++   C    E        +  FRE   KD   WN 
Sbjct: 468 QIHARVYVSGYAADISIWNTLVNLYAR--CGRSEE-------AFSLFREIDHKDEITWNG 518

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA 149
           +I  +      ++AL++F  M   G   + F+    + A + L  I++G Q+HG   K  
Sbjct: 519 LISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTG 578

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD 209
             S+  + N LISLY +CG +E A+ +F +M +R+ VS+N++I    + G    A +LFD
Sbjct: 579 HTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFD 638

Query: 210 SMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDA 269
            M                    + GL+            + +++  +L  C   G +++ 
Sbjct: 639 QMK-------------------QEGLK-----------PNDVTFIGVLAACSHVGLVEEG 668

Query: 270 QALFDKM-------PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGY 322
            + F  M       P  D   +A ++D   + G++D ARR  DEMP    +  NAM+   
Sbjct: 669 LSYFKSMSNVYGLNPIPD--HYACVVDILGRAGQLDRARRFVDEMP----ITANAMIWRT 722

Query: 323 VRNGYSM-KALEIFD-NMQCELYLHPDDASLVIVLS 356
           + +   + K +EI +   +  L L P D++  ++LS
Sbjct: 723 LLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLS 758


>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g29230-like [Glycine max]
          Length = 446

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 161/420 (38%), Positives = 255/420 (60%), Gaps = 3/420 (0%)

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
           +  A ++F  M  R++N+ +W +V+  +      +  A ++F+  P+ D++ WN ++ G 
Sbjct: 10  VADAYKVFAEM--RDKNVFAWTAVVAAHVACHDMVS-ARRLFDLAPQCDVVLWNVIVSGY 66

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
           ++ G M  A+ LFD+MP  DV+SW  ++ GYA  G V++  ++F+EMP R+V + N ++G
Sbjct: 67  IELGDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLIG 126

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           GYVRNG   +ALE F  M  +  + P+D ++V VLSA ++LG ++ G  +H Y +   + 
Sbjct: 127 GYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYK 186

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
            N   G ALIDMY+KCG IE A+ VF+ ++   +  WN +IN LA+H     A  L   M
Sbjct: 187 GNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGM 246

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500
           +R    PD +TF G+L+AC H GLV+ G L F+ M   + + P+++HYGCMVD+LGRAG 
Sbjct: 247 KRAGERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGL 306

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560
           I  A +++  MPMEP+ VIW  LL ACR Y+N+ + E   + LI ++ +N  ++V+LSN+
Sbjct: 307 INQAVDIVRKMPMEPDVVIWAALLGACRXYKNVEMAELALQRLIELEPNNPGNFVMLSNI 366

Query: 561 FAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +  LG   D  R++  M++   +K+PGCS I     V EF+  D+   +   IY  L  +
Sbjct: 367 YKDLGRSQDVARLKVAMRDTGFRKVPGCSVIGCNDSVVEFYSLDERHPETDSIYRALQGL 426



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 178/345 (51%), Gaps = 28/345 (8%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           ++F    +++ +V C  +  AR+LFD     D V +N ++ GY++ G++ +ARELFD MP
Sbjct: 24  NVFAWTAVVAAHVACHDMVSARRLFDLAPQCDVVLWNVIVSGYIELGDMVAARELFDRMP 83

Query: 213 IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
             + +++SWN+VL+GYA     ++   ++FE+MP R++ SWN ++ G V+ G   +A   
Sbjct: 84  --DCDVMSWNTVLSGYAN-NGEVELFVKVFEEMPARNVYSWNGLIGGYVRNGLFKEALEC 140

Query: 273 FDKMPKRDVV-----SWANMIDGYAKLGRVDIARRLF---DEMP-KRDVVACNAMMGGYV 323
           F +M    VV     +   ++   ++LG ++I + +    D +  K ++   NA++  Y 
Sbjct: 141 FKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNLFVGNALIDMYA 200

Query: 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG 383
           + G   KAL++FD +  +     D  +   +++++A   H    +++   +++     +G
Sbjct: 201 KCGVIEKALDVFDGLDVK-----DIITWNTIINSLAMHXHAADALSLFEGMKRAGERPDG 255

Query: 384 KHGVALIDMYSKCGSIENAIKVFEQIEDG-----SVDHWNAMINGLAIHGLGELAFDLLM 438
              V ++   +  G + N    F+ + D       ++H+  M++ L   GL   A D++ 
Sbjct: 256 VTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGLINQAVDIVR 315

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
           +M    +EPD + +  LL AC     V+   L    ++R+ +LEP
Sbjct: 316 KM---PMEPDVVIWAALLGACRXYKNVEMAELA---LQRLIELEP 354



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 125/252 (49%), Gaps = 14/252 (5%)

Query: 71  IFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV-DKFSASLVLKAC 129
           +F K       ++ + WN +I  Y      KEAL  F  ML +GV V + ++   VL AC
Sbjct: 105 LFVKVFEEMPARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSAC 164

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
           SRLG +E G  +H     + +  +LF+ N LI +Y +CG +E A  +FD + ++D +++N
Sbjct: 165 SRLGDLEIGKWVHVYADSIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWN 224

Query: 190 SMIDGYVKSGNIESARELFDSMP-IRER-NLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
           ++I+      +   A  LF+ M    ER + +++  +L+    +   ++  +  F+ M +
Sbjct: 225 TIINSLAMHXHAADALSLFEGMKRAGERPDGVTFVGILSACTHMGL-VRNGFLHFQSMVD 283

Query: 248 RDLISWNSMLHGCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIA- 300
             LI      +GC+     + G ++ A  +  KMP + DVV WA ++        V++A 
Sbjct: 284 DYLIVPQIEHYGCMVDLLGRAGLINQAVDIVRKMPMEPDVVIWAALLGACRXYKNVEMAE 343

Query: 301 ---RRLFDEMPK 309
              +RL +  P 
Sbjct: 344 LALQRLIELEPN 355


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 192/570 (33%), Positives = 304/570 (53%), Gaps = 54/570 (9%)

Query: 69  RYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA 128
           R +F KY    +K   + WN+II  ++   D  +AL  F  M    +  ++ +    +K+
Sbjct: 39  RSMFGKY---VDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKS 95

Query: 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY 188
           CS L  +  G QIH       +GSD+F+ + LI +Y +C                     
Sbjct: 96  CSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKC--------------------- 134

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQ--FAWQIFEKMP 246
                     G +  AR+LFD +P  ERN++SW S+++GY Q +   +  F ++ F  + 
Sbjct: 135 ----------GYLNDARKLFDEIP--ERNVVSWTSMISGYVQNERAREAVFLFKEFLLVD 182

Query: 247 ERDL-------ISWNSMLHGCV--KCGKM------DDAQALFDKMPKRDVVSWAN-MIDG 290
           E D        +  +S+L GCV   C ++      +    L  K      ++  N ++D 
Sbjct: 183 ETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDA 242

Query: 291 YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
           YAK G + ++R++FD M + DV + N+++  Y +NG S++A  +F +M     +  +  +
Sbjct: 243 YAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVT 302

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE 410
           L  VL A A  G +  G  IH  + K +   N   G +++DMY KCG +E A K F++++
Sbjct: 303 LSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLK 362

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470
             +V  W  M+ G  +HG G+ A  +  EM R  I+P+ ITF  +L AC+HAGL+KEG  
Sbjct: 363 RKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWH 422

Query: 471 CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNY 530
            F  M+    +EP ++HY CMVD+LGRAG+++ A  LI++M ++P+ ++W +LL ACR +
Sbjct: 423 WFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIH 482

Query: 531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSW 590
           +N+ +GE  A+ L  +D SN   YVLLSN++A  G W+D  R+R +MK   L K PG S 
Sbjct: 483 KNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSI 542

Query: 591 IELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +E +G VH F V DK   Q   IY  LD +
Sbjct: 543 VEHKGRVHVFLVGDKEHPQHEKIYEYLDEL 572


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 196/613 (31%), Positives = 311/613 (50%), Gaps = 63/613 (10%)

Query: 22  RKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAF 78
           + C   +DVN    +H   + TG + +  + + L+  ++ +           IF     F
Sbjct: 124 KACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNG---------KIFEGRRVF 174

Query: 79  REK--KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
            E   ++   W AII         KEALV F  M  + V  D ++ ++ LKAC+  G + 
Sbjct: 175 HEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALN 234

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G +IH    K  F    F+ N L ++Y +CG LE+   LF+KM +RD VS+ ++I   V
Sbjct: 235 YGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLV 294

Query: 197 KSGNIESARELFDSMPIRER----NLISWNSVLNGYAQLKS---GLQFAWQIFEKMPERD 249
           + G  E A + F  M  RE     N  ++ +V++G A L     G Q    I        
Sbjct: 295 QMGQEECAVQAFIRM--RESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAAS 352

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
           L   NS++    KCG++  +  +F +M +RD+VSW+ +I GY + G V            
Sbjct: 353 LSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVS----------- 401

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
                               +A E+   M+ E    P + +L  VLSA   +  ++ G  
Sbjct: 402 --------------------EAFELLSWMRME-GPKPTEFALASVLSACGNMAILEHGKQ 440

Query: 370 IHRYLEKDQFSLNGKHGV----ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
           +H Y+     S+  +H      ALI+MY KCGSIE A ++F+  E+  +  W AMING A
Sbjct: 441 LHAYV----LSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYA 496

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL 485
            HG      DL  ++ R+ + PD +TF G+L+AC+HAGLV  G   F  M + +++ P  
Sbjct: 497 EHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSK 556

Query: 486 QHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIG 545
           +HYGCM+D+L RAG +  A ++IE MP   +DV+W TLL ACR + ++  G   A+ ++ 
Sbjct: 557 EHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQ 616

Query: 546 MDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDK 605
           ++ + + +++ L+N++A  G W +A  +R +MK + + K PG SWI+++ +V  F   D+
Sbjct: 617 LEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDLVFAFVAGDR 676

Query: 606 SRLQVRDIYYMLD 618
           S  Q  DIY MLD
Sbjct: 677 SHPQGEDIYNMLD 689



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 125/542 (23%), Positives = 224/542 (41%), Gaps = 113/542 (20%)

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
           +DL   N  +   V+ G+L  AR++FDKM  +D +S+ ++I GYV + +   A  LF +M
Sbjct: 47  TDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNM 106

Query: 212 PIRE------------------RNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISW 253
            +                     + +++  +L+GYA +K+GL              +   
Sbjct: 107 RVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYA-VKTGLV-----------NSVFVG 154

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
           +++L    K GK+ + + +F +MP R+VVSW                             
Sbjct: 155 SALLDMYTKNGKIFEGRRVFHEMPMRNVVSW----------------------------- 185

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
              A++ G VR GY+ +AL  F  M     +  D  +  I L A A  G ++ G  IH  
Sbjct: 186 --TAIITGLVRAGYNKEALVYFSEMW-RSRVEYDSYTFAIALKACADSGALNYGREIHAQ 242

Query: 374 LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
             K  F ++      L  MY+KCG +E  + +FE++    V  W  +I  L   G  E A
Sbjct: 243 AMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECA 302

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACA-----------HAGLVKEGLL------------ 470
               + M    + P++ TF  +++ CA           HA ++  GL             
Sbjct: 303 VQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTM 362

Query: 471 ---CFELMRR---IHKL-EPELQHYGCMVDILGRAGHIEAARNLIEDMPME---PNDVIW 520
              C +L       H++   ++  +  ++    + GH+  A  L+  M ME   P +   
Sbjct: 363 YAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFAL 422

Query: 521 RTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV-LLSNMFAGLGMWNDARRVRSMMKE 579
            ++LSAC N   L  G+ +  +++ +   +++  +  L NM+   G   +A R+    + 
Sbjct: 423 ASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAEN 482

Query: 580 RNLKKLPGCSWIEL-EGVVHEFFVRDKSRLQVRDIYYMLDNM-WTPDSVA-----TSCTH 632
            ++      SW  +  G     + R     +V D++  +  +   PDSV      ++C+H
Sbjct: 483 DDI-----VSWTAMINGYAEHGYSR-----EVIDLFEKIPRVGLRPDSVTFIGVLSACSH 532

Query: 633 YG 634
            G
Sbjct: 533 AG 534


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 206/636 (32%), Positives = 340/636 (53%), Gaps = 68/636 (10%)

Query: 14  TQSTLLLLRKCKTLNDVN---QIHARM-ITTGFIKNTHLTTKLVASFS--SSPCTPLTEF 67
           +++  +LL+ C    D+    ++H  +  +T F  +  L T+++  +S   SP       
Sbjct: 105 SEAMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSD----- 159

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLD-NGVSVDKFSASLVL 126
           +R +F K      +K+ F WNAI+  Y+     ++A+ +F  ++       D F+   V+
Sbjct: 160 SRMVFDKL----RRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVI 215

Query: 127 KACSRLGLIEEGLQ--IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           KAC+  GL++ GL   IHG+  K+   SD+F+ N LI++Y +CG +E             
Sbjct: 216 KACA--GLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVE------------- 260

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQI 241
                            E+ + +FD M  +   + SWN++L GYAQ    +  L    Q+
Sbjct: 261 -----------------EAVKRVFDLMDTK--TVSSWNALLCGYAQNSDPRKALDLYLQM 301

Query: 242 FEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRV 297
            +   + D  +  S+L  C +   +   + +     +     D     +++  Y   G+ 
Sbjct: 302 TDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKP 361

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
             A+ LFD M  R +V+ N M+ GY +NG   +A+ +F  M  +  + P + +++ V  A
Sbjct: 362 FAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSD-GIQPYEIAIMCVCGA 420

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
            +QL  +  G  +H +  K   + +     ++IDMY+K G I  + ++F+++ +  V  W
Sbjct: 421 CSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASW 480

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
           N +I G  IHG G+ A +L  +M RL ++PDD TFTG+L AC+HAGLV++GL  F  M  
Sbjct: 481 NVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLN 540

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
           +H +EP+L+HY C+VD+LGRAG I+ A  LIE+MP +P+  IW +LLS+CR + NL +GE
Sbjct: 541 LHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGE 600

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVV 597
            VA  L+ ++     +YVL+SN+FAG G W+D RRVR  MK+  L+K  GCSWIE+ G V
Sbjct: 601 KVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKV 660

Query: 598 HEFFVRDK---SRLQVRDIYYMLDNM-----WTPDS 625
           H F + D+      +VR+ +  L+       +TPD+
Sbjct: 661 HNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDT 696



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 201/449 (44%), Gaps = 59/449 (13%)

Query: 6   NYNQPCNSTQSTLLLLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCT 62
           N+  PC        +++ C  L D+     IH        + +  +   L+A +    C 
Sbjct: 208 NFTLPC--------VIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGK--CG 257

Query: 63  PLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSA 122
            + E  + +F       + K    WNA++  Y+   DP++AL ++  M D+G+  D F+ 
Sbjct: 258 LVEEAVKRVF----DLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTI 313

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI 182
             +L ACSR+  +  G +IHG   +     D F+   L+SLY+ CG    A+ LFD M  
Sbjct: 314 GSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEH 373

Query: 183 RDSVSYNSMIDGYVKSGNIESARELF-----DSMPIRERNLISWNSVLNGYAQLKSGLQF 237
           R  VS+N MI GY ++G  + A  LF     D +   E  ++      +  + L+ G + 
Sbjct: 374 RSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKEL 433

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
                +     D+   +S++    K G +  +Q +FD++ ++DV SW  +I GY   GR 
Sbjct: 434 HCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGR- 492

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
                                           +ALE+F+ M   L L PDD +   +L A
Sbjct: 493 ------------------------------GKEALELFEKM-LRLGLKPDDFTFTGILMA 521

Query: 358 IAQLGHIDKGVA-IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVD 415
            +  G ++ G+   ++ L         +H   ++DM  + G I++A+++ E++  D    
Sbjct: 522 CSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSR 581

Query: 416 HWNAMINGLAIH---GLGELAFDLLMEME 441
            W+++++   IH   GLGE   + L+E+E
Sbjct: 582 IWSSLLSSCRIHGNLGLGEKVANKLLELE 610


>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
          Length = 602

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 189/545 (34%), Positives = 310/545 (56%), Gaps = 12/545 (2%)

Query: 85  FLWNAII-KTYSHGLDPKEALVMFCLM-LDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           F+WN +I K   +GL  ++  +++ +  L  G+  +  +   +LKA      ++EG ++H
Sbjct: 55  FVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVH 114

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
             + +  F    F+   L+  YV CG +   RQ+FD+M     V +  +I  YV     E
Sbjct: 115 ASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPE 174

Query: 203 SARELFDSMPIRE----RNLISWNSVLNGYAQLKS-GLQFAWQIF-EKMP-ERDLISWNS 255
            A ELF +M  RE     ++++ ++V++    L   G+  A   F EK   E D    ++
Sbjct: 175 KALELFRTM--REVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSST 232

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           ++    +CG +D A   F + P +++V W  MI    +   +++ ++LF  MP RDVV+ 
Sbjct: 233 LISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSW 292

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           N+M+GG+ R G   +AL  F  M+    + P+  +L+  LSA A  G +D G  IH Y++
Sbjct: 293 NSMIGGFARIGQYQEALTWFHEMEFS-GVSPNALTLLSTLSACASHGALDTGAWIHAYVD 351

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           K+  + +G    +LIDMYSKCG I+ A+++FE+     +  W +++ GLA+HG GE A  
Sbjct: 352 KNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALH 411

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
              +M+   ++PDD+T  G+L+ACAHAGL+ +G   F+ M ++  L P+++HYG MVD+L
Sbjct: 412 YFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGXMVDLL 471

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           GR G ++ A +LI  MPME N++IW   LSACR + N+ +GE  A+ L+G+   +  + V
Sbjct: 472 GRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLXPRDPWARV 531

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY 615
           +LSNM+A    W+ +  +R  +K++ LKK PGCS IE+ G VH F V D S     +I  
Sbjct: 532 MLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSIEVNGSVHGFLVGDNSHPCYTEINS 591

Query: 616 MLDNM 620
           M++ +
Sbjct: 592 MVEKI 596



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 91/232 (39%), Gaps = 35/232 (15%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D   WN++I  ++     +EAL  F  M  +GVS +  +    L AC+  G ++ G  I
Sbjct: 287 RDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWI 346

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H  + K     D  L + LI +Y +CG ++ A Q+F++   RD  ++ S++ G    G  
Sbjct: 347 HAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRG 406

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
           E A   F  M                               E   + D ++   +L  C 
Sbjct: 407 EKALHYFSKMK------------------------------EAQVQPDDVTMVGVLSACA 436

Query: 262 KCGKMDDAQALFDKMPK-----RDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
             G +D     F  M K       V  +  M+D   ++G +  A  L   MP
Sbjct: 437 HAGLLDQGWWYFQSMEKVFGLVPKVEHYGXMVDLLGRMGCLKEAYDLIMGMP 488


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 208/681 (30%), Positives = 342/681 (50%), Gaps = 84/681 (12%)

Query: 12  NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
           N+  S L L  + K+L D  ++H+ + + G   +  L  KLV  F    C  L +  R I
Sbjct: 58  NTYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLV--FMYVNCGDLVK-GRRI 114

Query: 72  FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
           F         K  FLWN ++  Y+   + +E++ +F  M + G+  D ++ + VLK  + 
Sbjct: 115 F---DGILNDK-IFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAA 170

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
              + E  ++HG + K+ FGS   + N LI+ Y +CG +E AR LFD++  RD VS+NSM
Sbjct: 171 SAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSM 230

Query: 192 IDGYVKSGNIESARELFDSM-----PIRERNLI------------SWNSVLNGY---AQL 231
           I G   +G   +  E F  M      +    L+            +    L+ Y   A  
Sbjct: 231 ISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGF 290

Query: 232 KSGLQF----------------AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK 275
             G+ F                A ++F KM E  ++SW S++   V+ G   +A  LFD+
Sbjct: 291 SGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDE 350

Query: 276 MPKR----DVVSWANMIDG-----------------------------------YAKLGR 296
           M  +    D+ +  +++                                     YAK G 
Sbjct: 351 MQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGS 410

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           ++ A  +F ++P +++V+ N M+GGY +N    +AL++F +MQ +  L PDD ++  VL 
Sbjct: 411 MEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ--LKPDDVTMACVLP 468

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
           A A L  ++KG  IH ++ +  +  +     AL+DMY KCG +  A ++F+ I    +  
Sbjct: 469 ACAGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMIL 528

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           W  MI G  +HG G+ A     +M    IEP++ +FT +L AC H+GL+KEG   F+ M+
Sbjct: 529 WTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMK 588

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
               +EP+L+HY CMVD+L R+G++  A   IE MP++P+  IW  LLS CR + ++ + 
Sbjct: 589 SECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELA 648

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
           E VA+H+  ++  N+  YVLL+N++A    W + ++++  + +  LK   GCSWIE++G 
Sbjct: 649 EKVAEHIFELEPENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEVQGK 708

Query: 597 VHEFFVRDKSRLQVRDIYYML 617
            + FF  D S  Q + I  +L
Sbjct: 709 FNIFFAGDTSHPQAKMIDSLL 729



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 131/290 (45%), Gaps = 19/290 (6%)

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARR 302
           E +L ++ S+L  C +   ++D + +   +       D V  A ++  Y   G +   RR
Sbjct: 54  ELELNTYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRR 113

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           +FD +    +   N +M  Y + G   +++ +F+ MQ EL +  D  +   VL   A   
Sbjct: 114 IFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQ-ELGIRGDSYTFTCVLKGFAASA 172

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
            + +   +H Y+ K  F        +LI  Y KCG +E+A  +F+++ D  V  WN+MI+
Sbjct: 173 KVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMIS 232

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
           G  ++G      +  ++M  L ++ D  T   +L ACA+ G +  G       R +H   
Sbjct: 233 GCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLG-------RALHAYG 285

Query: 483 PELQHYG------CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
            +    G       ++D+  + G++  A  +   M  E   V W ++++A
Sbjct: 286 VKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMG-ETTIVSWTSIIAA 334


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 203/613 (33%), Positives = 324/613 (52%), Gaps = 63/613 (10%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LL++C ++  + QIHA+++T    K      K+           L +FA    F    F 
Sbjct: 38  LLQQCLSIKQLKQIHAQLLTNSIHKPNSFLYKI---------ADLKDFAYASVF----FS 84

Query: 80  EKKDP--FLWNAIIKTYSHGLDPKE-ALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
              DP  + +N +I+  S   +    AL  +  M   G+  +  +   +  ACS L  +E
Sbjct: 85  NILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVE 144

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G   H  + +     D  + + LI++Y RCG          KMG               
Sbjct: 145 NGRMGHCSVIRRGLDEDGHVSHSLITMYARCG----------KMG--------------- 179

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----IS 252
                  AR++FD   I +++L+SWNS+++GY++++   + A  +F +M E       +S
Sbjct: 180 ------DARKVFDE--ISQKDLVSWNSMISGYSKMRHAGE-AVGLFREMMEAGFQPNEMS 230

Query: 253 WNSMLHGC-----VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
             S+L  C     +K G   +   + +KM     +  A +I  Y K G +  ARR+FD M
Sbjct: 231 LVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSA-LIHMYGKCGDLVSARRIFDSM 289

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
            K+D V  NAM+ GY +NG S +A+++F +M+      PD  +L+ +LSA A +G +D G
Sbjct: 290 KKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMS-STAPDQITLIGILSACASIGALDLG 348

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
             +  Y  +  F  +   G AL+DMY+KCGS++NA +VF  +   +   WNAMI+ LA H
Sbjct: 349 KQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFH 408

Query: 428 GLGELAFDLLMEM--ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL 485
           G  + A  L   M  E  ++ P+DITF G+L+AC HAGLV EG   F +M     L P++
Sbjct: 409 GQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKI 468

Query: 486 QHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIG 545
           +HY CMVD+  RAGH+E A + +  MP +P++VI   LL AC+  +N+++ E V K L+ 
Sbjct: 469 EHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLE 528

Query: 546 MDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDK 605
           ++ SNS +YV+ S ++A L  W+D+ R+R +MK++ + K PGCSWI++   +HEF   D 
Sbjct: 529 LEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDINSQLHEFHAGDV 588

Query: 606 SRLQVRDIYYMLD 618
              +  +I+ +LD
Sbjct: 589 LHQEWIEIHQILD 601


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 199/611 (32%), Positives = 314/611 (51%), Gaps = 76/611 (12%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D   +N +I  ++     + AL +F  M  +G+S D  + S +L AC+ LG +++G Q+
Sbjct: 207 RDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQL 266

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H  L K    SD  ++  L+ LYV+CG +E A  +F+     + V +N M+  + +  ++
Sbjct: 267 HSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDL 326

Query: 202 ESARELFDSMP--------------------IRERNL---ISWNSVLNGYAQ--LKSGL- 235
             + ELF  M                      RE +L   I   SV  G+      SG+ 
Sbjct: 327 AKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVL 386

Query: 236 -----QFAW-----QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK------- 278
                ++ W     ++ E + E+D++SW SM+ G V+     DA A F +M K       
Sbjct: 387 IDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDN 446

Query: 279 --------------------------------RDVVSWANMIDGYAKLGRVDIARRLFDE 306
                                            DV  W  +++ YA+ GR+  A   F+E
Sbjct: 447 IGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEE 506

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           M  +D +  N ++ G+ ++G   +AL++F  M      H +  + V  LSA A L  I +
Sbjct: 507 MELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKH-NVFTFVSALSASANLAEIKQ 565

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G  IH  + K   S   + G ALI +Y KCGS E+A   F ++ + +   WN +I   + 
Sbjct: 566 GKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQ 625

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           HG G  A DL  +M++  I+P+D+TF G+L AC+H GLV+EGL  F+ M   + + P   
Sbjct: 626 HGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPD 685

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HY C++DI GRAG ++ A+  IE+MP+  + ++WRTLLSAC+ ++N+ VGE  AKHL+ +
Sbjct: 686 HYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLEL 745

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           +  +S+SYVLLSN +A    W +  +VR MM++R ++K PG SWIE++ VVH FFV D+ 
Sbjct: 746 EPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRL 805

Query: 607 RLQVRDIYYML 617
                 IY  L
Sbjct: 806 HPLAEQIYNFL 816



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 155/618 (25%), Positives = 278/618 (44%), Gaps = 64/618 (10%)

Query: 30  VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNA 89
           V +IHA+ +T G  K   +   L+  +S +    L   AR +F +  A    +D   W A
Sbjct: 61  VPEIHAKAVTRGLGKYRIVGNLLIDLYSKNG---LVLPARRVFEELSA----RDNVSWVA 113

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA 149
           ++  Y+     +EAL ++  M   GV    +  S VL +C++  L  +G  IH    K  
Sbjct: 114 MLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHG 173

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD 209
           F S++F+ N +I+LY+RCG    A ++F  M  RD+V++N++I G+ + G+ E A E+F+
Sbjct: 174 FCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFE 233

Query: 210 SMPIR--ERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCG 264
            M       + ++ +S+L   A    L+ G Q    +F+     D I   S+L   VKCG
Sbjct: 234 EMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCG 293

Query: 265 KMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVR 324
            ++ A  +F+   + +VV W  M+  + ++   D+A                        
Sbjct: 294 DVETALVIFNSSDRTNVVLWNLMLVAFGQIN--DLA------------------------ 327

Query: 325 NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK 384
                K+ E+F  MQ    + P+  +   +L        ID G  IH    K  F  +  
Sbjct: 328 -----KSFELFCQMQAA-GIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMY 381

Query: 385 HGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS 444
               LIDMYSK G +E A +V E +++  V  W +MI G   H   + A     EM++  
Sbjct: 382 VSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCG 441

Query: 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH--KLEPELQHYGCMVDILGRAGHIE 502
           I PD+I     ++ CA    +++GL   ++  RI+      ++  +  +V++  R G I 
Sbjct: 442 IWPDNIGLASAISGCAGINAMRQGL---QIHARIYVSGYSGDVSIWNALVNLYARCGRIR 498

Query: 503 AARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS----NSSSYVLLS 558
            A +  E+M ++ + +    L+S    +    + E   K  + MD S    N  ++V   
Sbjct: 499 EAFSSFEEMELK-DGITGNGLVSG---FAQSGLHEEALKVFMRMDQSGVKHNVFTFVSAL 554

Query: 559 NMFAGLGMWNDARRV--RSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYM 616
           +  A L      +++  R +    + +   G + I L G    F   + ++++  ++   
Sbjct: 555 SASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSF---EDAKMEFSEMSER 611

Query: 617 LDNMWTPDSVATSCTHYG 634
            +  W  +++ TSC+ +G
Sbjct: 612 NEVSW--NTIITSCSQHG 627


>gi|356510733|ref|XP_003524089.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Glycine max]
          Length = 649

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 197/561 (35%), Positives = 307/561 (54%), Gaps = 37/561 (6%)

Query: 52  LVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLML 111
           +V+ + S   +   E  R +F        ++D   WN +I  Y+      +AL +F  M 
Sbjct: 106 IVSGYFSCCGSRFVEEGRRLF----ELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMP 161

Query: 112 D-NGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYL 170
           + N VS +      +L      G +E  +   G  R +       L   LIS  VR G L
Sbjct: 162 EHNAVSYNAVITGFLLN-----GDVESAV---GFFRTMPEHDSTSLC-ALISGLVRNGEL 212

Query: 171 EFARQLFDKMGIRDSV------SYNSMIDGYVKSGNIESARELFDSMPIR---------- 214
           + A  +  + G  D        +YN++I GY + G++E AR LFD +P            
Sbjct: 213 DLAAGILRECGNGDDGKDDLVHAYNTLIAGYGQRGHVEEARRLFDVIPDDDDDGNEGKRR 272

Query: 215 -ERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
             RN++SWNS++  Y  +K+G + FA ++F++M ERD  SWN+++   V+   M++A  L
Sbjct: 273 FRRNVVSWNSMMMCY--VKAGDIVFARELFDRMVERDNCSWNTLISCYVQISNMEEASKL 330

Query: 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
           F +MP  DV+SW ++I G A+ G +++A+  F+ MP +++++ N ++ GY +N     A+
Sbjct: 331 FREMPSPDVLSWNSIISGLAQKGDLNLAKDFFERMPHKNLISWNTIIAGYEKNEDYKGAI 390

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDM 392
           ++F  MQ E    PD  +L  V+S    L  +  G  +H+ + K     +     +LI M
Sbjct: 391 KLFSEMQLEGE-RPDKHTLSSVISVSTGLVDLYLGKQLHQLVTKTVLP-DSPINNSLITM 448

Query: 393 YSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDIT 451
           YS+CG+I +A  VF +I+    V  WNAMI G A HG    A +L   M+RL I P  IT
Sbjct: 449 YSRCGAIVDACTVFNEIKLYKDVITWNAMIGGYASHGSAAEALELFKLMKRLKIHPTYIT 508

Query: 452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM 511
           F  +LNACAHAGLV+EG   F+ M   + +EP ++H+  +VDILGR G ++ A +LI  M
Sbjct: 509 FISVLNACAHAGLVEEGWRQFKSMINDYGIEPRVEHFASLVDILGRQGQLQEAMDLINTM 568

Query: 512 PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDAR 571
           P +P+  +W  LL ACR + N+ +    A  LI ++  +S+ YVLL NM+A LG W+DA 
Sbjct: 569 PFKPDKAVWGALLGACRVHNNVELALVAADALIRLEPESSAPYVLLYNMYANLGQWDDAE 628

Query: 572 RVRSMMKERNLKKLPGCSWIE 592
            VR +M+E+N+KK  G SW++
Sbjct: 629 SVRVLMEEKNVKKQAGYSWVD 649



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 185/399 (46%), Gaps = 67/399 (16%)

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
           S L   N  +S  +R G +  AR LFD M  RD+V++NSMI GYV+   I  AR+LFD M
Sbjct: 36  SPLNQSNKKLSNLIRSGRISEARTLFDSMKRRDTVTWNSMISGYVQRREIARARQLFDEM 95

Query: 212 PIRERNLISWNSVLNGYAQLKSGLQFAWQ---IFEKMPERDLISWNSMLHGCVKCGKMDD 268
           P   R+++SWN +++GY     G +F  +   +FE MP+RD +SWN+++ G  K G+MD 
Sbjct: 96  P--RRDVVSWNLIVSGYFSC-CGSRFVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMDQ 152

Query: 269 AQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYS 328
           A  LF+ MP+ + VS+  +I G+   G V+ A   F  MP+ D  +  A++ G VRNG  
Sbjct: 153 ALKLFNAMPEHNAVSYNAVITGFLLNGDVESAVGFFRTMPEHDSTSLCALISGLVRNG-- 210

Query: 329 MKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV--AIHRYLEKDQFSLNGKHG 386
                                 L +    + + G+ D G    +H Y             
Sbjct: 211 ---------------------ELDLAAGILRECGNGDDGKDDLVHAY------------- 236

Query: 387 VALIDMYSKCGSIENAIKVFEQIEDG-------------SVDHWNAMINGLAIHGLGELA 433
             LI  Y + G +E A ++F+ I D              +V  WN+M+      G    A
Sbjct: 237 NTLIAGYGQRGHVEEARRLFDVIPDDDDDGNEGKRRFRRNVVSWNSMMMCYVKAGDIVFA 296

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493
            +L   M    +E D+ ++  L++       ++E    F  M       P++  +  ++ 
Sbjct: 297 RELFDRM----VERDNCSWNTLISCYVQISNMEEASKLFREMP-----SPDVLSWNSIIS 347

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYEN 532
            L + G +  A++  E MP + N + W T+++     E+
Sbjct: 348 GLAQKGDLNLAKDFFERMPHK-NLISWNTIIAGYEKNED 385


>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Glycine max]
          Length = 521

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 166/442 (37%), Positives = 272/442 (61%), Gaps = 10/442 (2%)

Query: 186 VSYNSMIDGYVKSGNIESARELFDSM--PIRERNLISWNSVLNGYAQL--KSGLQFAWQI 241
           VS+ + I  Y KSG++  A   F  M     E N I++ ++L+  A    +S + F   I
Sbjct: 57  VSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTAI 116

Query: 242 FEKMPE-----RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR 296
              + +      D++   +++    KCG+++ A+  FD+M  R++VSW  MIDGY + G+
Sbjct: 117 HAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNGK 176

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
            + A ++FD +P ++ ++  A++GG+V+  Y  +ALE F  MQ    + PD  +++ V++
Sbjct: 177 FEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLS-GVAPDYVTVIAVIA 235

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
           A A LG +  G+ +HR +    F  N K   +LIDMYS+CG I+ A +VF+++   ++  
Sbjct: 236 ACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVS 295

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           WN++I G A++GL + A      M+    +PD +++TG L AC+HAGL+ EGL  FE M+
Sbjct: 296 WNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHMK 355

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
           R+ ++ P ++HYGC+VD+  RAG +E A N++++MPM+PN+VI  +LL+ACR   N+ + 
Sbjct: 356 RVRRILPRIEHYGCLVDLYSRAGRLEEALNVLKNMPMKPNEVILGSLLAACRTQGNIGLA 415

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
           E V  +LI +DS   S+YVLLSN++A +G W+ A +VR  MKER ++K PG S IE++  
Sbjct: 416 ENVMNYLIELDSGGDSNYVLLSNIYAAVGKWDGANKVRRRMKERGIQKKPGFSSIEIDSS 475

Query: 597 VHEFFVRDKSRLQVRDIYYMLD 618
           +H+F   DKS  +   IY  L+
Sbjct: 476 IHKFVSGDKSHEEKDHIYAALE 497



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 183/341 (53%), Gaps = 18/341 (5%)

Query: 83  DPFL-WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL---GLIEEG 138
           DP + W   I  Y       +A   F  M +  +  +  +   +L AC+       I  G
Sbjct: 54  DPIVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFG 113

Query: 139 LQIHGLLRKVAFG-SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
             IH  +RK+    +D+ +   LI +Y +CG +E AR  FD+MG+R+ VS+N+MIDGY++
Sbjct: 114 TAIHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMR 173

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLISW 253
           +G  E A ++FD +P+  +N ISW +++ G+ + K   + A + F +M       D ++ 
Sbjct: 174 NGKFEDALQVFDGLPV--KNAISWTALIGGFVK-KDYHEEALECFREMQLSGVAPDYVTV 230

Query: 254 NSMLHGCVKCGKMDDA---QALFDKMPKRDVVSWAN-MIDGYAKLGRVDIARRLFDEMPK 309
            +++  C   G +        L      R+ V  +N +ID Y++ G +D+AR++FD MP+
Sbjct: 231 IAVIAACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQ 290

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           R +V+ N+++ G+  NG + +AL  F++MQ E +  PD  S    L A +  G I +G+ 
Sbjct: 291 RTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGF-KPDGVSYTGALMACSHAGLIGEGLR 349

Query: 370 IHRYLEKDQFSLNG-KHGVALIDMYSKCGSIENAIKVFEQI 409
           I  ++++ +  L   +H   L+D+YS+ G +E A+ V + +
Sbjct: 350 IFEHMKRVRRILPRIEHYGCLVDLYSRAGRLEEALNVLKNM 390



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 110/234 (47%), Gaps = 35/234 (14%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           K+   W A+I  +      +EAL  F  M  +GV+ D  +   V+ AC+ LG +  GL +
Sbjct: 190 KNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIAACANLGTLGLGLWV 249

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H L+    F +++ + N LI +Y RCG ++ ARQ+FD+M  R  VS+NS+I G+  +G  
Sbjct: 250 HRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVSWNSIIVGFAVNGLA 309

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
           + A   F+SM                               E+  + D +S+   L  C 
Sbjct: 310 DEALSYFNSMQ------------------------------EEGFKPDGVSYTGALMACS 339

Query: 262 KCGKMDDAQALFDKMPK-RDVVS----WANMIDGYAKLGRVDIARRLFDEMPKR 310
             G + +   +F+ M + R ++     +  ++D Y++ GR++ A  +   MP +
Sbjct: 340 HAGLIGEGLRIFEHMKRVRRILPRIEHYGCLVDLYSRAGRLEEALNVLKNMPMK 393


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 187/537 (34%), Positives = 291/537 (54%), Gaps = 31/537 (5%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           WNA ++  +     +EAL ++C ML +G S + F+     K+C+ L L   G Q+HG + 
Sbjct: 24  WNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVI 83

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK--MGIRDSVSYNSMIDGYVKSGNIESA 204
           K     + F+Q  LIS+Y +C  +  AR++FD+       +V YN++I GY  +     A
Sbjct: 84  KTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDA 143

Query: 205 RELFDSMPIRERNLISWNSV-LNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKC 263
             LF  M    +  +S N+V + G   + +G           P    + + + LH C   
Sbjct: 144 VLLFRQM---RKEGVSVNAVTMLGLIPVCAG-----------PIH--LGFGTSLHACSVR 187

Query: 264 GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV 323
             +D            D+     ++  Y + G VD AR+LFD MP++ ++  NAM+ GY 
Sbjct: 188 FGLDG-----------DLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYA 236

Query: 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG 383
           +NG +   L+++  M+    + PD  +LV VLS+ A LG    G  + + +E   F  N 
Sbjct: 237 QNGLAGHVLDLYRKMEFTGIV-PDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNP 295

Query: 384 KHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
               ALI+MY++CG++  A  +F+ + + +V  W A+I G  +HG GELA  L  EM   
Sbjct: 296 FLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISS 355

Query: 444 SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503
              PD   F  +L+AC+HAGL ++GL  F  M R + L+P  +HY C+VD+LGRAG +E 
Sbjct: 356 DELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEE 415

Query: 504 ARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563
           AR LI  M +EP+  +W  LL AC+ + N+ + E   + +I  + +N   YVLLSN+F+ 
Sbjct: 416 ARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSE 475

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            G      RVR MM+ER LKK PGCS++E +G +H F   D++  Q ++IY+MLD +
Sbjct: 476 AGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGL 532



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 121/253 (47%), Gaps = 17/253 (6%)

Query: 65  TEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL 124
            +FAR +F        +K    WNA+I  Y+        L ++  M   G+  D  +   
Sbjct: 210 VDFARKLFDGM----PEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVG 265

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           VL +C+ LG    G ++   +    FG + FL+N LI++Y RCG L  AR +FD M  ++
Sbjct: 266 VLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKN 325

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRER--NLISWNSVLNGYAQLKSGLQFAWQIF 242
            +S+ ++I GY   G  E A +LFD M   +   +  ++ SVL+  +   +GL      +
Sbjct: 326 VISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSH--AGLTEKGLYY 383

Query: 243 EKMPERDL-ISWNSMLHGCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLG 295
               ERD  +      + CV     + G++++A+ L   M  + D   W  ++ G  K+ 
Sbjct: 384 FTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALL-GACKIH 442

Query: 296 R-VDIARRLFDEM 307
           R V++A   F+++
Sbjct: 443 RNVELAELAFEKV 455


>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
          Length = 560

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 186/585 (31%), Positives = 296/585 (50%), Gaps = 100/585 (17%)

Query: 12  NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
           ++T S   LL+ C T + + Q+HAR+I  G  ++  + ++ +     + C  L+ F+   
Sbjct: 71  DTTSSISTLLKACTTTSTLEQVHARIIRKGLHQDHFIISQFL-----TLCNSLSNFS--- 122

Query: 72  FFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKAC 129
            +    F     P   LWN  IK YS        + +F  M  +    DKF+   ++KAC
Sbjct: 123 -YTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKAC 181

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
           S++  ++EG+  HG   +   G D+F+                                 
Sbjct: 182 SKVCGVKEGVAFHGSAVRCGVGGDVFVMT------------------------------- 210

Query: 190 SMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERD 249
           S+ID Y K G I  AR++FD                                  +M ER+
Sbjct: 211 SLIDLYGKCGEILCARKVFD----------------------------------EMGERN 236

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP- 308
           ++SW +M+ G      + +A+ LFD+MP+++ VSW  +I GY K G +  AR++FDEMP 
Sbjct: 237 VVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPH 296

Query: 309 -KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
             RDVVA +A++ G V+                     PD+  +V ++SA +Q+G ++  
Sbjct: 297 RNRDVVAWSALISGNVK---------------------PDEFIMVSLMSACSQMGSLELA 335

Query: 368 VAIHRYLEKDQFSLNGKHGVA-LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
             +  Y+ K    ++  H +A LIDM +KCGS++ A K+FE++    +  + +M+ GL+I
Sbjct: 336 KWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSI 395

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           HG G  A  L   M    + PDD+ FT +L AC+ AGLV EG   FE M+  + + P   
Sbjct: 396 HGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPD 455

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HY CMVD+LGRAG ++ A  L++ MP+EP+   W  LL AC+ + ++ +GE VA  L  +
Sbjct: 456 HYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFEL 515

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           +  N+ +YVLLSN++A    W D   +R+ M+ER ++K+PGCSWI
Sbjct: 516 EPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 560


>gi|449465220|ref|XP_004150326.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial-like [Cucumis sativus]
          Length = 874

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 199/622 (31%), Positives = 326/622 (52%), Gaps = 69/622 (11%)

Query: 11  CNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY 70
           C    S  LL   C  L+ V+     ++ +G++K   L                 E AR 
Sbjct: 280 CGLLSSARLLFDSCSVLDSVS---CNIMMSGYVKLRQL-----------------ENARQ 319

Query: 71  IFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS 130
           +F K      ++    +  +I   +      EA+ +F  M   GV+ ++ + + V+ ACS
Sbjct: 320 LFAKM----PERGCVSYTTMILGLAQNDCWGEAIEVFKDMRSAGVAPNEVTMASVMSACS 375

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
            +G I     +H L+ K+ F   + +   L+ +Y     L+  ++LF++M +R++VS+N 
Sbjct: 376 HIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCVFSSLKDTKRLFNEMPVRNTVSWNV 435

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL 250
           M+ GYVKSG ++ ARELF+ +P  ER++ SW  +++G+ Q+K  L+ A  ++  M + DL
Sbjct: 436 MLKGYVKSGLVDQARELFERIP--ERDVFSWAIMIDGFVQMKR-LRKALLLYSAMRKSDL 492

Query: 251 -------------------ISWNSMLHGCV--------------------KCGKMDDAQA 271
                              I      H  +                     C ++D A  
Sbjct: 493 HPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCFDFIQATIISFYAACRRIDLAYL 552

Query: 272 LFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKA 331
            +    K  + S   MI G+ K G +D AR++FD MP++DV + + M+ GY +N     A
Sbjct: 553 QYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQNELPDVA 612

Query: 332 LEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALID 391
           L++F  M  +  + P++ ++V V SAIA LG + +G   H Y+      LN     A+ID
Sbjct: 613 LDLFHGM-IDSKVEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKVIPLNDNLSAAIID 671

Query: 392 MYSKCGSIENAIKVFEQIED--GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD 449
           MY+KCGSI+ A+ VF QI+D   +V  WNA+I GLA+HG   L+ ++   ++R SI+ + 
Sbjct: 672 MYAKCGSIDTALDVFRQIKDKTSTVSPWNAIICGLAMHGHANLSLEIFSNLQRRSIKLNS 731

Query: 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE 509
           ITF G+L+AC HAGLV+ G   F  M+  H +EP ++HYGC+VD+LGR G +  A  ++ 
Sbjct: 732 ITFLGVLSACCHAGLVEVGERYFWSMKTQHGVEPNIKHYGCLVDLLGRVGRLREAEEIVR 791

Query: 510 DMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWND 569
            MPM+ + VIW TLL++ R +  + +GE  A++L  +  S+    VLLSN++A  G+W D
Sbjct: 792 TMPMKADVVIWGTLLASSRTHGEVEIGERAAENLARLQPSHGPGRVLLSNLYADAGLWED 851

Query: 570 ARRVRSMMKERNLKKLPGCSWI 591
           A  VR  ++ + + + PG S +
Sbjct: 852 AALVRRAIQSQRMIRSPGYSGV 873



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 138/464 (29%), Positives = 218/464 (46%), Gaps = 77/464 (16%)

Query: 119 KFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD 178
           + S    LK C+    I  G QIH ++ K  F S+ F+ N LI++YV+CG L  AR LFD
Sbjct: 232 ELSVVSALKYCASSSAISSGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFD 291

Query: 179 KMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFA 238
              + DSVS N M+ GYVK   +E+AR+LF  MP  ER  +S+ +++ G AQ     + A
Sbjct: 292 SCSVLDSVSCNIMMSGYVKLRQLENARQLFAKMP--ERGCVSYTTMILGLAQNDCWGE-A 348

Query: 239 WQIFEKM------PERDLIS------------WNS-MLHGCV------------------ 261
            ++F+ M      P    ++            WN  MLH  V                  
Sbjct: 349 IEVFKDMRSAGVAPNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHM 408

Query: 262 KC--GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM 319
            C    + D + LF++MP R+ VSW  M+ GY K G VD AR LF+ +P+RDV +   M+
Sbjct: 409 YCVFSSLKDTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIMI 468

Query: 320 GGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF 379
            G+V+     KAL ++  M+ +  LHP++  +V +LSA  Q   I++G   H  + K+ F
Sbjct: 469 DGFVQMKRLRKALLLYSAMR-KSDLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGF 527

Query: 380 SLNGKHGVALIDMYSKC-------------------------------GSIENAIKVFEQ 408
                    +I  Y+ C                               G I+ A ++F+ 
Sbjct: 528 VCFDFIQATIISFYAACRRIDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDM 587

Query: 409 IEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
           + +  V  W+ MI+G A + L ++A DL   M    +EP++IT   + +A A  G + EG
Sbjct: 588 MPEKDVFSWSTMISGYAQNELPDVALDLFHGMIDSKVEPNEITMVSVFSAIAALGKLPEG 647

Query: 469 LLCFE-LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM 511
               E +  ++  L   L     ++D+  + G I+ A ++   +
Sbjct: 648 RWAHEYVCNKVIPLNDNLS--AAIIDMYAKCGSIDTALDVFRQI 689


>gi|218184996|gb|EEC67423.1| hypothetical protein OsI_34621 [Oryza sativa Indica Group]
          Length = 799

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 193/632 (30%), Positives = 326/632 (51%), Gaps = 32/632 (5%)

Query: 19  LLLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           +LL+ C  L +++   Q+HA  + TG   +    + LV  +    C  L + A   F+  
Sbjct: 154 VLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGK--CRSLDD-ALCFFYGM 210

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
                +++   W + I            L +F  M   G+ V + S +   ++C+ +  +
Sbjct: 211 ----PERNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCL 266

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
             G Q+H    K  F SD  +   ++ +Y +   L  AR+ F  +      + N+M+ G 
Sbjct: 267 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL 326

Query: 196 VK------------SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFE 243
                         SG   +  E     P ++ + ++  SVL+ Y + K+ ++ A+ IF+
Sbjct: 327 FMIRSSIRFDVVSLSGVFSACAETKGYFPGQQVHCLAIKSVLDLYGKCKALME-AYLIFQ 385

Query: 244 KMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRL 303
            M ++D +SWN+++    + G  DD    F++M + D    + ++D Y K G +D A++L
Sbjct: 386 GMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFDAFVASTVVDMYCKCGIIDEAQKL 445

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
            D +  + VV+ NA++ G+  N  S  A + F  M  ++ L PD  +   VL   A L  
Sbjct: 446 HDRIGGQQVVSWNAILSGFSLNKESEAAQKFFSEM-LDMGLKPDHFTFATVLDTCANLAT 504

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           I+ G  IH  + K +   +      L+DMY+KCG + +++ VFE++E      WNAMI G
Sbjct: 505 IELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICG 564

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
            A+HGLG  A  +   M++ ++ P+  TF  +L AC+H GL  +G   F LM   +KLEP
Sbjct: 565 YALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEP 624

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
           +L+H+ CMVDILGR+   + A   I  MP + + VIW+TLLS C+  +++ + E  A ++
Sbjct: 625 QLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNV 684

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVR 603
           + +D  +SS Y+LLSN++A  G W D  R R ++K+  LKK PGCSWIE +  +H F V 
Sbjct: 685 LLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEAQSEMHGFLVG 744

Query: 604 DKSRLQVRDIYYMLDNM--------WTPDSVA 627
           DK+  +  ++Y ML+++        + PDS +
Sbjct: 745 DKAHPRSGELYEMLNDLIGEMKLSGYEPDSAS 776



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 127/520 (24%), Positives = 243/520 (46%), Gaps = 52/520 (10%)

Query: 115 VSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKV--AFGSDLFLQNCLISLYVRCGYLEF 172
           V+  + + S V ++C++ G            R V   F    F+ NCL+ +Y RC     
Sbjct: 11  VAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAGAAC 70

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK 232
           AR++FD M  RD+VS+N+M+  Y  +G+I +A  LFD MP  + +++SWN++++GY Q +
Sbjct: 71  ARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMP--DPDVVSWNALVSGYCQ-R 127

Query: 233 SGLQFAWQIFEKMPER----DLISWNSMLHGCVKCGKMD---DAQALFDKMP-KRDVVSW 284
              Q +  +F +M  R    D  ++  +L  C    ++       AL  K   + DV + 
Sbjct: 128 GMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTG 187

Query: 285 ANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYL 344
           + ++D Y K   +D A   F  MP+R+ V+  + + G V+N   ++ LE+F  MQ  L L
Sbjct: 188 SALVDMYGKCRSLDDALCFFYGMPERNWVSWGSAIAGCVQNEQYVRGLELFIEMQ-RLGL 246

Query: 345 HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIK 404
                S      + A +  ++ G  +H +  K++FS +   G A++D+Y+K  S+ +A +
Sbjct: 247 GVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARR 306

Query: 405 VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL 464
            F  + + +V+  NAM+ GL               M R SI  D ++ +G+ +ACA    
Sbjct: 307 AFFGLPNHTVETSNAMMVGLF--------------MIRSSIRFDVVSLSGVFSACAETKG 352

Query: 465 VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
              G       +++H L  +      ++D+ G+   +  A  + + M  + + V W  ++
Sbjct: 353 YFPG-------QQVHCLAIK-----SVLDLYGKCKALMEAYLIFQGMK-QKDSVSWNAII 399

Query: 525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKK 584
           +A     + +        ++  D+  +S+ V   +M+   G+ ++A+++          +
Sbjct: 400 AALEQNGHYDDTILHFNEMLRFDAFVASTVV---DMYCKCGIIDEAQKLHD--------R 448

Query: 585 LPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPD 624
           + G   +    ++  F +  +S    +    MLD    PD
Sbjct: 449 IGGQQVVSWNAILSGFSLNKESEAAQKFFSEMLDMGLKPD 488



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 116/443 (26%), Positives = 182/443 (41%), Gaps = 89/443 (20%)

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           D   WNA++  Y      +E++ +F  M   GVS D+ + +++LK+CS L  +  G+Q+H
Sbjct: 113 DVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVH 172

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
            L  K     D+   + L+ +Y +C  L+ A   F  M  R+ VS+ S I G V++    
Sbjct: 173 ALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGSAIAGCVQNEQYV 232

Query: 203 SARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVK 262
              ELF          I    +  G +Q      F              S  +M   C+ 
Sbjct: 233 RGLELF----------IEMQRLGLGVSQPSYASAFR-------------SCAAM--SCLN 267

Query: 263 CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG- 321
            G+   A A+ +K     VV  A ++D YAK   +  ARR F  +P   V   NAMM G 
Sbjct: 268 TGRQLHAHAIKNKFSSDRVVGTA-IVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL 326

Query: 322 --------------------------------------------YVRNGYSMKALEIFDN 337
                                                       Y +    M+A  IF  
Sbjct: 327 FMIRSSIRFDVVSLSGVFSACAETKGYFPGQQVHCLAIKSVLDLYGKCKALMEAYLIFQG 386

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVA-IHRYLEKDQFSLNGKHGVALIDMYSKC 396
           M+       D  S   +++A+ Q GH D  +   +  L  D F  +      ++DMY KC
Sbjct: 387 MK-----QKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFDAFVAS-----TVVDMYCKC 436

Query: 397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLL 456
           G I+ A K+ ++I    V  WNA+++G +++   E A     EM  + ++PD  TF  +L
Sbjct: 437 GIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEAAQKFFSEMLDMGLKPDHFTFATVL 496

Query: 457 NACAHAGLVKEGLLCFELMRRIH 479
           + CA+       L   EL ++IH
Sbjct: 497 DTCAN-------LATIELGKQIH 512


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 176/461 (38%), Positives = 268/461 (58%), Gaps = 5/461 (1%)

Query: 164 YVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRE--RNLISW 221
           Y   G L+ +  L  +     ++ Y S I  +   G+   A  L   M  +       + 
Sbjct: 333 YAASGRLDLSLALLRRTRDPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTL 392

Query: 222 NSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM-PKRD 280
           ++ L     L  G       F+     D     ++L    + G    A+ALFD M P   
Sbjct: 393 SASLPACRGLSPGRALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPH 452

Query: 281 VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQC 340
           VVS   M+  YA +G +D AR LFD +P +D V  NAM+ GY ++G   +AL +F  M  
Sbjct: 453 VVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLG 512

Query: 341 ELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ-FSLNGKHGVALIDMYSKCGSI 399
              + PD+ ++V+VLSA+AQLG ++ G  +H Y++  +   L+ + G ALIDMY KCGS+
Sbjct: 513 S-GVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSL 571

Query: 400 ENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
            +A+ VF  I D  +  WNAMING A+HG    A ++ ++     + P DITF GLLNAC
Sbjct: 572 GDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNAC 631

Query: 460 AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI 519
           +H+G+V+EG   F+ M R + ++P+++HYGCMVD+LGRAG I+ A  L++ M + P+ V+
Sbjct: 632 SHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVM 691

Query: 520 WRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579
           W +LL+ACR ++N+++G+ +A +L+    +NS  Y+LLSN++A +G W +  RVRSMMK 
Sbjct: 692 WVSLLAACRLHKNMSLGQQIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMMKA 751

Query: 580 RNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
             ++K PGCS IE++  V+EF   D S  +  +IY MLD M
Sbjct: 752 SGIQKEPGCSSIEIDREVYEFVAGDMSHPRTDEIYVMLDKM 792



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 204/455 (44%), Gaps = 65/455 (14%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTH--LTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           LL  C T     ++HA ++ TG +  T   +  +L  ++++S    L+            
Sbjct: 295 LLTSCSTARRAAELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLS---------LAL 345

Query: 78  FREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
            R  +DP    + + I  +S       AL +   ML  G+     + S  L AC  L   
Sbjct: 346 LRRTRDPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPACRGL--- 402

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS--VSYNSMID 193
             G  +HG   K+A   D ++   L+ +Y R G    AR LFD M + D   VS  +M+ 
Sbjct: 403 SPGRALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDM-LPDPHVVSVTAMLT 461

Query: 194 GYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM----PERD 249
            Y   G ++ AR LFD +P   ++ + WN++++GY Q     + A ++F +M     E D
Sbjct: 462 CYADMGALDDARSLFDGLPT--KDFVCWNAMIDGYTQHGRPNE-ALRLFRRMLGSGVEPD 518

Query: 250 LISWNSMLHGCVKCGKMDDAQAL--FDKMPKR---DVVSWANMIDGYAKLGRVDIARRLF 304
            ++   +L    + G ++  + L  + K  +R    V     +ID Y K G +  A  +F
Sbjct: 519 EVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVF 578

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
             +  +D+V  NAM+ GY  +G S KALE+F   + E  L P D + + +L+A +  G +
Sbjct: 579 HGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSR-EQGLWPTDITFIGLLNACSHSGMV 637

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
           ++G    + +E++       +G+                       D  ++H+  M++ L
Sbjct: 638 EEGREFFQSMERE-------YGI-----------------------DPKIEHYGCMVDLL 667

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
              GL + AF L+  M+   I PD + +  LL AC
Sbjct: 668 GRAGLIKEAFCLVQSMK---ITPDAVMWVSLLAAC 699


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 155/350 (44%), Positives = 233/350 (66%), Gaps = 2/350 (0%)

Query: 272 LFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKA 331
           LFD+MP   VVS   M+  YA +G +D ARRLFD +P++D +  NAM+ GY ++G   +A
Sbjct: 176 LFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEA 235

Query: 332 LEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ-FSLNGKHGVALI 390
           L++F  M       PD+ ++V+VLSA+AQLG ++ G  +H Y++  +   LN +   AL+
Sbjct: 236 LQLFRRM-LRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALV 294

Query: 391 DMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
           DMY KCGS+E+A+ VF  I +  +  WNAMING A+HG    A ++ +++    + P DI
Sbjct: 295 DMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDI 354

Query: 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIED 510
           TF GLLNAC+H+GLV+EG   F+ M   + ++P+++HYGCMVD+LGRAG IE A +L++ 
Sbjct: 355 TFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQS 414

Query: 511 MPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDA 570
           + + P+ V+W +LL+ACR ++N+ +G+ +A  L+    +NS  Y+LLSN++A +G W + 
Sbjct: 415 LTITPDAVMWVSLLAACRLHKNMALGQRIADFLVANGLANSGMYILLSNIYAAVGKWEEV 474

Query: 571 RRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            RVRSMMK   ++K PGCS IE++  V+EF   D S     +IY MLD M
Sbjct: 475 ARVRSMMKASGIQKEPGCSAIEIDRKVYEFVAGDMSHPCTDEIYAMLDKM 524



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 119/453 (26%), Positives = 201/453 (44%), Gaps = 64/453 (14%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCT--PLTEFARYIFFKYHA 77
           LL  C T    +++HA ++  G   +  +  +L  ++++S      LT   R        
Sbjct: 30  LLAACSTARRASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGR-------- 81

Query: 78  FREKKDP---FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
               KDP   F  +AI    S GL     L +   ML  G+     + S  L AC  L L
Sbjct: 82  ---TKDPTTIFYTSAIHAHSSRGLH-LPGLALLSDMLSEGLLPTAHTLSASLPACRGLSL 137

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
              G  +H    K+A   D ++   L+S+Y R G    AR LFD+M     VS  +M+  
Sbjct: 138 ---GRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTC 194

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLI 251
           Y   G ++ AR LFD +P   ++ I WN++++GY Q       LQ   ++     E D +
Sbjct: 195 YANMGALDDARRLFDGLP--RKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEV 252

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSW-----ANMIDGYAKLGRVDIARRLFDE 306
           +   +L    + G ++  + L   +     V         ++D Y K G ++ A  +F  
Sbjct: 253 TVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHG 312

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           +  +D+V  NAM+ GY  +G S KALE+F  ++ +  L P D + + +L+A +  G +++
Sbjct: 313 IGNKDIVVWNAMINGYAMHGDSRKALEMFVQLR-DQGLWPTDITFIGLLNACSHSGLVEE 371

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G +  + +E +       +G+                       D  ++H+  M++ L  
Sbjct: 372 GRSFFQSMEHE-------YGI-----------------------DPKIEHYGCMVDLLGR 401

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
            GL E AF L+   + L+I PD + +  LL AC
Sbjct: 402 AGLIEEAFHLV---QSLTITPDAVMWVSLLAAC 431


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 191/612 (31%), Positives = 323/612 (52%), Gaps = 53/612 (8%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           LL+ C    D+    +IH ++I  GF  N    T +V  ++   C  L E A  +F +  
Sbjct: 181 LLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAK--CR-LVEEAYKMFDRM- 236

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
               ++D   WN II  Y+     K AL +   M + G   D  +   +L A + +G + 
Sbjct: 237 ---PERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLR 293

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G  IHG   +  F S + +   L+ +Y +C                             
Sbjct: 294 IGRSIHGYSMRAGFESFVNVSTALVDMYSKC----------------------------- 324

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----IS 252
             G++ +AR +FD M    + ++SWNS+++GY Q       A +IF+KM +  +    ++
Sbjct: 325 --GSVGTARLIFDRMT--GKTVVSWNSMIDGYVQ-NGDPGAAMEIFQKMMDEQVEMTNVT 379

Query: 253 WNSMLHGCVKCGKMDDAQ---ALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
               LH C   G ++  +    L D++    DV    ++I  Y+K  RVDIA  +F+ + 
Sbjct: 380 VMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQ 439

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            + +V+ NAM+ GY +NG   +A++ F  MQ +  + PD  ++V V+ A+A+L  + +  
Sbjct: 440 HKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQ-NIKPDSFTMVSVIPALAELSVLPQAK 498

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            IH  + +     N     AL+DMY+KCG++  A K+F+ +++  V  WNAMI+G   HG
Sbjct: 499 WIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHG 558

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
           LG+ A +L  +M++  I+P+++TF  +L+AC+H+GLV+EG   F  M++ + LEP + HY
Sbjct: 559 LGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHY 618

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
           G MVD+LGRA  +  A + I+ MP+EP   ++  +L ACR ++N+ +GE  A  +  +D 
Sbjct: 619 GAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDP 678

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
            +   +VLL+N++A   MW+   RVR+ M+++ ++K PG S +EL+  VH F+    S  
Sbjct: 679 DDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHP 738

Query: 609 QVRDIYYMLDNM 620
           Q + IY  L+ +
Sbjct: 739 QAKKIYAFLETL 750



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 93/205 (45%), Gaps = 17/205 (8%)

Query: 16  STLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           S +  L +   L     IH  +I T   KN  + T LV  ++   C  +   AR +F   
Sbjct: 483 SVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAK--CGAV-HTARKLF--- 536

Query: 76  HAFREKKDPFLWNAIIKTY-SHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
               +++    WNA+I  Y +HGL  K AL +F  M    +  ++ +   VL ACS  GL
Sbjct: 537 -DMMDERHVTTWNAMIDGYGTHGLG-KAALELFEKMKKEVIKPNEVTFLCVLSACSHSGL 594

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQN--CLISLYVRCGYLEFARQLFDKMGIRDSVS-YNSM 191
           +EEG Q  G ++K  +G +  + +   ++ L  R   L  A     KM I  ++S + +M
Sbjct: 595 VEEGFQYFGSMKK-DYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAM 653

Query: 192 IDGYVKSGNIE----SARELFDSMP 212
           +       N+E    +A  +FD  P
Sbjct: 654 LGACRIHKNVELGEKAANRIFDLDP 678


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 204/665 (30%), Positives = 336/665 (50%), Gaps = 84/665 (12%)

Query: 33  IHARMITTGFI---KNTHLTTKLVASFSSSP--CTPLTEF---------ARYIFFKYHA- 77
           +HAR++T   +    + HLT +L+  ++ SP   TP   F         A       HA 
Sbjct: 47  LHARLLTADLLHAPSHPHLTLRLIHLYTLSPDLATPAALFRSDPDPGPVAATSLVAAHAA 106

Query: 78  ---FRE-----------KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG-VSVDKFSA 122
               R+           ++D  L NA++  ++       A+ +F  +L +G +  D +S 
Sbjct: 107 AGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSF 166

Query: 123 SLVLKACSRLGLIEEG--LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF---ARQLF 177
           + ++ A  ++  +      Q+H  + K    + L + N LI+LY++C   E    AR++ 
Sbjct: 167 TALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVL 226

Query: 178 DKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-Q 236
           D+M  +D +++ +M+ GYV+ G++ +AR +F+   +  +  + WN++++GY Q  SG+  
Sbjct: 227 DEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEE--VDGKFDVVWNAMISGYVQ--SGMCA 282

Query: 237 FAWQIFEKMPER----DLISWNSMLHGCV------------------------------- 261
            A+++F +M       D  ++ S+L  C                                
Sbjct: 283 DAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVN 342

Query: 262 --------KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
                   K GK+  A+ +FD M  +DVVSW  ++ GY   G +D A  +F  MP ++ +
Sbjct: 343 NALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDL 402

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
           +   M+ GYV  G S  AL++F+ M+ E  + P D +    ++A  +LG +  G  +H +
Sbjct: 403 SWMVMVSGYVHGGLSEDALKLFNQMRAE-DVKPCDYTYAGAIAACGELGALKHGRQLHAH 461

Query: 374 LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
           L +  F  +   G AL+ MY+KCG++ +A  VF  + +     WNAMI+ L  HG G  A
Sbjct: 462 LVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREA 521

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493
            +L  +M    I+PD I+F  +L AC HAGLV EG   FE M+R   + P   HY  ++D
Sbjct: 522 LELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLID 581

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS 553
           +LGR+G I  AR+LI+ MP EP   IW  +LS CR   ++  G   A  L  M   +  +
Sbjct: 582 LLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGT 641

Query: 554 YVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
           Y+LLSN ++  G W DA RVR +M++R +KK PGCSWIE+   +H F V D    + +++
Sbjct: 642 YILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEV 701

Query: 614 YYMLD 618
           Y  L+
Sbjct: 702 YQFLE 706


>gi|354805201|gb|AER41619.1| CRR4 [Oryza glumipatula]
          Length = 745

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 208/621 (33%), Positives = 324/621 (52%), Gaps = 64/621 (10%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLV-ASFSS-SPCTPLTEFARYIF 72
           Q+ L +LR   +   + Q HAR++  G   +  L   LV A+FS+ SPC        Y  
Sbjct: 3   QALLRILRTLGSTAHLTQAHARLLAAGLAASPRLLPALVAAAFSAHSPC--------YAA 54

Query: 73  FKYHAFREKKDPFLWNAIIK----------TYSHGLDPKEALVMFCLMLDNGVSVDKFSA 122
               A          N +++            +    P +AL  +  M   GV  + F+ 
Sbjct: 55  AALRAAGPTASTVSHNTLVERLAGARPRGRRPAPAPAPADALAAYAAMRAQGVPPNGFTF 114

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF---ARQLFDK 179
           + +L+AC+ LGL      +HG + +  FGSD+F+QN L+ +Y RCG       ARQ+FD+
Sbjct: 115 TFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALVDVYHRCGGGGGVGAARQVFDE 174

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAW 239
           M  RD VS+NS++  Y+ SG+   A   F++MP  ERN++SWN+V+ G+A++   +  A 
Sbjct: 175 MVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMP--ERNVVSWNTVVAGFARMGD-MVTAR 231

Query: 240 QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDI 299
            +F++MP R+ +SWN M+ G    G ++ A+++FD+M ++DVVSW  M+  YAK+G +D 
Sbjct: 232 AVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGDLDT 291

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
              LFD MP +++V+ NAM+ GY  N    +AL  F  M  E    PD+A+LV V+SA A
Sbjct: 292 TNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACA 351

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
           QLG ++    I  ++ K    L    G ALIDM++KCG +  A  +F ++E   +  W  
Sbjct: 352 QLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAQSIFYKMETRCIITWTT 411

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           MI+G A +    L ++    M R  ++ DD  F   L ACAH GL++EG   F  M   +
Sbjct: 412 MISGFAFNRDALLVYN---NMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFNEMVERY 468

Query: 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPV 539
            ++P ++HYGCMVD+LGRA  IE                                    V
Sbjct: 469 NIQPRMEHYGCMVDLLGRAELIEY-----------------------------------V 493

Query: 540 AKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHE 599
           +K +  ++  NSS  VL+SN  A  G W+     R+ M+   ++K+PG S I++   VHE
Sbjct: 494 SKKITELEPFNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGIEKVPGSSSIQVGSEVHE 553

Query: 600 FFVRDKSRLQVRDIYYMLDNM 620
           F  +D    + ++I+  +D +
Sbjct: 554 FLAKDTRHKRRKEIFETVDGL 574


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 198/611 (32%), Positives = 314/611 (51%), Gaps = 76/611 (12%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D   +N +I  ++     + AL +F  M  +G+S D  + S +L AC+ LG +++G Q+
Sbjct: 207 RDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQL 266

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H  L K    SD  ++  L+ LYV+CG +E A  +F+     + V +N M+  + +  ++
Sbjct: 267 HSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDL 326

Query: 202 ESARELFDSMP--------------------IRERNL---ISWNSVLNGYAQ--LKSGL- 235
             + ELF  M                      RE +L   I   SV  G+      SG+ 
Sbjct: 327 AKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVL 386

Query: 236 -----QFAW-----QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK------- 278
                ++ W     ++ E + E+D++SW SM+ G V+     DA A F +M K       
Sbjct: 387 IDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDN 446

Query: 279 --------------------------------RDVVSWANMIDGYAKLGRVDIARRLFDE 306
                                            DV  W  +++ YA+ GR+  A   F+E
Sbjct: 447 IGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEE 506

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           +  +D +  N ++ G+ ++G   +AL++F  M      H +  + V  LSA A L  I +
Sbjct: 507 IEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKH-NVFTFVSALSASANLAEIKQ 565

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G  IH  + K   S   + G ALI +Y KCGS E+A   F ++ + +   WN +I   + 
Sbjct: 566 GKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQ 625

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           HG G  A DL  +M++  I+P+D+TF G+L AC+H GLV+EGL  F+ M   + + P   
Sbjct: 626 HGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPD 685

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HY C++DI GRAG ++ A+  IE+MP+  + ++WRTLLSAC+ ++N+ VGE  AKHL+ +
Sbjct: 686 HYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLEL 745

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           +  +S+SYVLLSN +A    W +  +VR MM++R ++K PG SWIE++ VVH FFV D+ 
Sbjct: 746 EPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRL 805

Query: 607 RLQVRDIYYML 617
                 IY  L
Sbjct: 806 HPLAEQIYNFL 816



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 155/618 (25%), Positives = 279/618 (45%), Gaps = 64/618 (10%)

Query: 30  VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNA 89
           V +IHA+ +T G  K   +   L+  +S +    L   AR +F +  A    +D   W A
Sbjct: 61  VPEIHAKAVTRGLGKYRIVGNLLIDLYSKNG---LVLPARRVFEELSA----RDNVSWVA 113

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA 149
           ++  Y+     +EAL ++  M   GV    +  S VL +C++  L  +G  IH    K  
Sbjct: 114 MLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHG 173

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD 209
           F S++F+ N +I+LY+RCG    A ++F  M  RD+V++N++I G+ + G+ E A E+F+
Sbjct: 174 FCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFE 233

Query: 210 SMPIR--ERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCG 264
            M       + ++ +S+L   A    L+ G Q    +F+     D I   S+L   VKCG
Sbjct: 234 EMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCG 293

Query: 265 KMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVR 324
            ++ A  +F+   + +VV W  M+  + ++   D+A                        
Sbjct: 294 DVETALVIFNSSDRTNVVLWNLMLVAFGQIN--DLA------------------------ 327

Query: 325 NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK 384
                K+ E+F  MQ    + P+  +   +L        ID G  IH    K  F  +  
Sbjct: 328 -----KSFELFCQMQAA-GIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMY 381

Query: 385 HGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS 444
               LIDMYSK G +E A +V E +++  V  W +MI G   H   + A     EM++  
Sbjct: 382 VSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCG 441

Query: 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH--KLEPELQHYGCMVDILGRAGHIE 502
           I PD+I     ++ CA    +++GL   ++  RI+      ++  +  +V++  R G I 
Sbjct: 442 IWPDNIGLASAISGCAGINAMRQGL---QIHARIYVSGYSGDVSIWNALVNLYARCGRIR 498

Query: 503 AARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS----NSSSYVLLS 558
            A +  E++  + +++ W  L+S    +    + E   K  + MD S    N  ++V   
Sbjct: 499 EAFSSFEEIEHK-DEITWNGLVSG---FAQSGLHEEALKVFMRMDQSGVKHNVFTFVSAL 554

Query: 559 NMFAGLGMWNDARRV--RSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYM 616
           +  A L      +++  R +    + +   G + I L G    F   + ++++  ++   
Sbjct: 555 SASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSF---EDAKMEFSEMSER 611

Query: 617 LDNMWTPDSVATSCTHYG 634
            +  W  +++ TSC+ +G
Sbjct: 612 NEVSW--NTIITSCSQHG 627


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 192/592 (32%), Positives = 320/592 (54%), Gaps = 49/592 (8%)

Query: 75  YHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL 132
           +  F E  +P    W A+I  Y+     + A+ MF  M+ + V   +F+ + VL +C+ +
Sbjct: 99  HRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAV 158

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
             +  G ++H  + K    S + + N L+++Y + G    A+ +FD+M ++ + S+N+MI
Sbjct: 159 ECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMI 218

Query: 193 DGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM-----PE 247
             +++SG ++ A+  F+ M   ER+++SWN++++GY Q     + A  IF KM      +
Sbjct: 219 SSHMQSGLVDLAQVQFEQMI--ERDVVSWNAMISGYNQHGFDRE-ALDIFSKMLMDSSSK 275

Query: 248 RDLISWNSMLHGCV-----------------------------------KCGKMDDAQAL 272
            D  +  S L  C                                    K G ++ AQ +
Sbjct: 276 PDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKI 335

Query: 273 FDK--MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMK 330
            ++  +   DV+++  ++DGY KLG ++ ARR+FD +  RDVVA  AM+ GYV+NG++  
Sbjct: 336 IEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQD 395

Query: 331 ALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI 390
           A+E+F +M  E    P++ +L  +LS  + L  +D G  IH    +   + +     ALI
Sbjct: 396 AMELFRSMIKE-GPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALI 454

Query: 391 DMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD 449
            MY+K GSI +A  VF  I        W +MI  LA HGLGE A  L   M    I+PD 
Sbjct: 455 TMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDH 514

Query: 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE 509
           IT+ G+L+AC H GLV++G   + LM+  HK+ P   HY CM+D+ GRAG ++ A   IE
Sbjct: 515 ITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIE 574

Query: 510 DMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWND 569
           +MP+EP+ + W +LL++C+ ++N+ + E  A+ L+ ++  NS +Y  L+N+++  G W +
Sbjct: 575 NMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWEN 634

Query: 570 ARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMW 621
           A  +R  MK++ +KK  G SW++++  VH F V D    Q   IY M+  +W
Sbjct: 635 AANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMMAKIW 686



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 148/544 (27%), Positives = 246/544 (45%), Gaps = 94/544 (17%)

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G  IH  + K      +FL N L++ Y + G++  A ++FD+M ++   S+N ++ GY K
Sbjct: 32  GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERD-------- 249
            G +E A  +F+ MP  E + +SW +++ GY Q+    + A  +F +M   D        
Sbjct: 92  GGRLEEAHRVFEEMP--EPDSVSWTAMIVGYNQMGQ-FENAIGMFREMVSDDVPPTQFTL 148

Query: 250 ---------------------------LISW----NSMLHGCVKCGKMDDAQALFDKMPK 278
                                      L S+    NS+L+   K G    A+ +FD+M  
Sbjct: 149 TNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKL 208

Query: 279 RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM 338
           +   SW  MI  + + G VD+A+  F++M +RDVV+ NAM+ GY ++G+  +AL+IF  M
Sbjct: 209 KSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKM 268

Query: 339 QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS 398
             +    PD  +L   LSA A L ++  G  IH ++ + +F   G  G ALI MYSK G 
Sbjct: 269 LMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGG 328

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
           +E A K+ EQ          +MI+ L                       D I FT LL+ 
Sbjct: 329 VEIAQKIIEQ----------SMISNL-----------------------DVIAFTALLDG 355

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
               G +      F+ +R    +       G + +   +   +E  R++I++ P +PN+ 
Sbjct: 356 YVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDA-MELFRSMIKEGP-KPNNY 413

Query: 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL---LSNMFAGLGMWNDARRVRS 575
              T+LS   +  +L+ G  +  H     S N+SS  +   L  M+A  G  NDAR V +
Sbjct: 414 TLATMLSVSSSLASLDHGRQI--HASATRSGNASSVSVSNALITMYAKSGSINDARWVFN 471

Query: 576 MMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPD-----SVATSC 630
           ++      K    +W  +   + +  + +++   +     ML+N   PD      V ++C
Sbjct: 472 LIHW----KRDTITWTSMIIALAQHGLGEEA---LTLFERMLENGIKPDHITYVGVLSAC 524

Query: 631 THYG 634
           TH G
Sbjct: 525 THVG 528


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 198/611 (32%), Positives = 314/611 (51%), Gaps = 76/611 (12%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D   +N +I  ++     + AL +F  M  +G+S D  + S +L AC+ LG +++G Q+
Sbjct: 207 RDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQL 266

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H  L K    SD  ++  L+ LYV+CG +E A  +F+     + V +N M+  + +  ++
Sbjct: 267 HSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDL 326

Query: 202 ESARELFDSMP--------------------IRERNL---ISWNSVLNGYAQ--LKSGL- 235
             + ELF  M                      RE +L   I   SV  G+      SG+ 
Sbjct: 327 AKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVL 386

Query: 236 -----QFAW-----QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK------- 278
                ++ W     ++ E + E+D++SW SM+ G V+     DA A F +M K       
Sbjct: 387 IDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDN 446

Query: 279 --------------------------------RDVVSWANMIDGYAKLGRVDIARRLFDE 306
                                            DV  W  +++ YA+ GR+  A   F+E
Sbjct: 447 IGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEE 506

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           +  +D +  N ++ G+ ++G   +AL++F  M      H +  + V  LSA A L  I +
Sbjct: 507 IEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKH-NVFTFVSALSASANLAEIKQ 565

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G  IH  + K   S   + G ALI +Y KCGS E+A   F ++ + +   WN +I   + 
Sbjct: 566 GKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQ 625

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           HG G  A DL  +M++  I+P+D+TF G+L AC+H GLV+EGL  F+ M   + + P   
Sbjct: 626 HGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPD 685

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HY C++DI GRAG ++ A+  IE+MP+  + ++WRTLLSAC+ ++N+ VGE  AKHL+ +
Sbjct: 686 HYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLEL 745

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           +  +S+SYVLLSN +A    W +  +VR MM++R ++K PG SWIE++ VVH FFV D+ 
Sbjct: 746 EPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRL 805

Query: 607 RLQVRDIYYML 617
                 IY  L
Sbjct: 806 HPLAEQIYNFL 816



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 155/618 (25%), Positives = 279/618 (45%), Gaps = 64/618 (10%)

Query: 30  VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNA 89
           V +IHA+ +T G  K   +   L+  +S +    L   AR +F +  A    +D   W A
Sbjct: 61  VPEIHAKAVTRGLGKYRIVGNLLIDLYSKNG---LVLPARRVFEELSA----RDNVSWVA 113

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA 149
           ++  Y+     +EAL ++  M   GV    +  S VL +C++  L  +G  IH    K  
Sbjct: 114 MLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHG 173

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD 209
           F S++F+ N +I+LY+RCG    A ++F  M  RD+V++N++I G+ + G+ E A E+F+
Sbjct: 174 FCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFE 233

Query: 210 SMPIR--ERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCG 264
            M       + ++ +S+L   A    L+ G Q    +F+     D I   S+L   VKCG
Sbjct: 234 EMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCG 293

Query: 265 KMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVR 324
            ++ A  +F+   + +VV W  M+  + ++   D+A                        
Sbjct: 294 DVETALVIFNSSDRTNVVLWNLMLVAFGQIN--DLA------------------------ 327

Query: 325 NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK 384
                K+ E+F  MQ    + P+  +   +L        ID G  IH    K  F  +  
Sbjct: 328 -----KSFELFCQMQAA-GIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMY 381

Query: 385 HGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS 444
               LIDMYSK G +E A +V E +++  V  W +MI G   H   + A     EM++  
Sbjct: 382 VSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCG 441

Query: 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH--KLEPELQHYGCMVDILGRAGHIE 502
           I PD+I     ++ CA    +++GL   ++  RI+      ++  +  +V++  R G I 
Sbjct: 442 IWPDNIGLASAISGCAGINAMRQGL---QIHARIYVSGYSGDVSIWNALVNLYARCGRIR 498

Query: 503 AARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS----NSSSYVLLS 558
            A +  E++  + +++ W  L+S    +    + E   K  + MD S    N  ++V   
Sbjct: 499 EAFSSFEEIEHK-DEITWNGLVSG---FAQSGLHEEALKVFMRMDQSGVKHNVFTFVSAL 554

Query: 559 NMFAGLGMWNDARRV--RSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYM 616
           +  A L      +++  R +    + +   G + I L G    F   + ++++  ++   
Sbjct: 555 SASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSF---EDAKMEFSEMSER 611

Query: 617 LDNMWTPDSVATSCTHYG 634
            +  W  +++ TSC+ +G
Sbjct: 612 NEVSW--NTIITSCSQHG 627


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 200/606 (33%), Positives = 320/606 (52%), Gaps = 67/606 (11%)

Query: 74  KYHAFR--EKKDPFLWNAIIKTYSHGLDPKEALVMFCL-MLDNGVSVDKFSASLVLKACS 130
           K H F   + +D + WN +I  Y    +  E +  F L ML +G++ D  +   VLKAC 
Sbjct: 38  KMHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR 97

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
               + +G +IH L  K  F  D+++   LI LY R   +  AR LFD+M +RD  S+N+
Sbjct: 98  T---VIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNA 154

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ--------------LKSGLQ 236
           MI GY +SGN + A  L  S  +R  + ++  S+L+   +              +K GL+
Sbjct: 155 MISGYCQSGNAKEALTL--SNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLE 212

Query: 237 F-----AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV-------VSW 284
                   ++F++M  RDLISWNS++       +   A +LF +M    +       +S 
Sbjct: 213 SELLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISL 272

Query: 285 ANMIDG---------------------------------YAKLGRVDIARRLFDEMPKRD 311
           A+++                                   YAKLG VD AR +F+ +P  D
Sbjct: 273 ASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTD 332

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           V++ N ++ GY +NG++ +A+E+++ M+ E  +  +  + V VL A +Q G + +G+ +H
Sbjct: 333 VISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLH 392

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
             L K+   L+     +L DMY KCG +E+A+ +F QI   +   WN +I     HG GE
Sbjct: 393 GRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGE 452

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            A  L  EM    ++PD ITF  LL+AC+H+GLV EG  CFE+M+  + + P L+HYGCM
Sbjct: 453 KAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCM 512

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551
           VD+ GRAG +E A   I+ M ++P+  IW  LLSACR + N+++G+  ++HL  ++  + 
Sbjct: 513 VDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHV 572

Query: 552 SSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVR 611
             +VLLSNM+A  G W     +RS+   + L+K PG S +E++  V  F+  +++     
Sbjct: 573 GYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYE 632

Query: 612 DIYYML 617
           ++Y  L
Sbjct: 633 EMYREL 638


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 175/499 (35%), Positives = 286/499 (57%), Gaps = 10/499 (2%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +L +C  L  +   LQIH  +    F     + + LI+LY      + AR +FD      
Sbjct: 58  LLSSCKHLNPL---LQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPS 113

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIR---ERNLISWNSVLNGYAQLKSGLQFAWQI 241
            + +NSMI  Y +S     A E++  M  +   ER++     +++ Y+++   L+ A ++
Sbjct: 114 RILWNSMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVDMYSKM-GDLKRAREV 172

Query: 242 FEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIAR 301
           F+KMP+RD+++WN+M+ G  +      A+ +FD+M  +D VSW  M+ GYA  G      
Sbjct: 173 FDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVL 232

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
            LFD+M K   V  N ++  Y++NG++ +A+  F  M+ E + HP+  + V VL A A L
Sbjct: 233 ELFDKM-KLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENF-HPNSVTFVSVLPAAAYL 290

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
               +G+A H  + +  F  N   G +LIDMY+KCG ++ + K+F +++      WNAM+
Sbjct: 291 AAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAML 350

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
           +G A+HG G+ A  L   M+   ++ D ++F  +L+AC HAGLV+EG   F  M   + +
Sbjct: 351 SGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHI 410

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
           +P+L+HY CMVD+LGRAG  +     I+ MP+EP+  +W  LL +CR + N+ +GE    
Sbjct: 411 KPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALD 470

Query: 542 HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
           HL+ ++  N + +V+LS+++A  G W DA + RS M +  LKK PGCSW+EL+  VH F 
Sbjct: 471 HLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFR 530

Query: 602 VRDKSRLQVRDIYYMLDNM 620
           V DKS  Q+  ++ + + +
Sbjct: 531 VGDKSHPQLESMHLLWNTL 549



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 131/471 (27%), Positives = 220/471 (46%), Gaps = 101/471 (21%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFS-SSPCTPLTEFARYIFFKYHAF 78
           LL  CK LN + QIHA++I +GF K+ H  T L+  +S    C    + AR +      F
Sbjct: 58  LLSSCKHLNPLLQIHAQIIVSGF-KHHHSITHLINLYSLFHKC----DLARSV------F 106

Query: 79  REKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
               +P   LWN++I+ Y+      EAL M+  M++ G                      
Sbjct: 107 DSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKG---------------------- 144

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
                 GL R      D+F+   L+ +Y + G L+ AR++FDKM  RD V++N+MI G  
Sbjct: 145 ------GLER------DVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLS 192

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
           +S +   AR +FD M   +++ +SW +++ GYA     ++   ++F+KM   + ++WN +
Sbjct: 193 QSEDPYVARRVFDQMV--DQDDVSWGTMMAGYAHNGCFVE-VLELFDKMKLGN-VTWNVI 248

Query: 257 LHGCVKCGKMDDAQALFDKM------PK-------------------------------- 278
           +   ++ G   +A + F +M      P                                 
Sbjct: 249 IAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGF 308

Query: 279 -RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
             + +   ++ID YAK G++D + +LF+EM  +D V+ NAM+ GY  +G+  +A+ +F  
Sbjct: 309 LSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSL 368

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI-HRYLEKDQFSLNGKHGVALIDMYSKC 396
           MQ E  +  D  S V VLSA    G +++G  I H   +K     + +H   ++D+  + 
Sbjct: 369 MQ-ESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRA 427

Query: 397 GSIENA---IKVFEQIEDGSVDHWNAMINGLAIHG---LGELAFDLLMEME 441
           G  +     IKV     D  V  W A++    +H    LGE+A D L+++E
Sbjct: 428 GLFDETLGFIKVMPVEPDAGV--WGALLGSCRMHSNVKLGEVALDHLVKLE 476


>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
 gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
          Length = 598

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 185/548 (33%), Positives = 290/548 (52%), Gaps = 52/548 (9%)

Query: 84  PFLWNAIIKTYSHGLDPKEALVMFCLML-----DNGVSVDKFSASLVLKACSRLGL-IEE 137
           PF  NA+I + +H  DP  A   F L+L       G   D ++    LKAC+RLG  + E
Sbjct: 79  PF--NALISSLTHAGDPSAAFRAFALLLVASGAGAGARPDGYTLPAALKACARLGGGLRE 136

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G Q H +  K  F   + +QN L++ Y  CG                             
Sbjct: 137 GCQAHAVAEKAGFLGRVPVQNALVTFYGACG----------------------------- 167

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
                 AR++FD M   ER+++SW ++L+ + +    ++    + E     + ++  S+L
Sbjct: 168 --QCGDARKVFDEMA--ERDVVSWTALLSAFTRGGMFMEALGVLAEMDVTPNEVTLASVL 223

Query: 258 HGCVKCGKMDDAQA-------LFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
              V CG +  A+A        F +  + +++    ++D Y K  ++D+ARR+FD +  R
Sbjct: 224 ---VACGNLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLAR 280

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
           D+V+   M+ G V+     +ALE+F+ MQ    + PD   L  VLSA A LG ++ G  +
Sbjct: 281 DIVSWTVMISGLVQCKRPSEALEVFNAMQIS-GVKPDKVVLSTVLSACASLGALESGRWV 339

Query: 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
           H Y+E+     +   G +++DMY KCG ++ A+ +F+++   +V  WNA+ING A+HG G
Sbjct: 340 HEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRG 399

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
             A D    M    + P+++TF  +L AC H+GLV+EG   FELM + +KL P   HYGC
Sbjct: 400 REALDCFDRMVASGLHPNEVTFITVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYGC 459

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           MVD+LGRAG I+ A ++I+ MPM P    W TLLSAC+ +  ++  + +  H+  ++SS 
Sbjct: 460 MVDLLGRAGLIQEAYDVIKAMPMRPGVFTWVTLLSACQAHGRMDFSQQILMHIHELESSG 519

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQV 610
           +  YVLLSNM+A    W D  + R  M E+ ++K PG S IE+ G   EF V  ++ L +
Sbjct: 520 NGIYVLLSNMYAVSDRWADVGKARGFMNEKGMQKEPGSSVIEVNGKTCEFLVGQQNHLYM 579

Query: 611 RDIYYMLD 618
            D+  ML 
Sbjct: 580 DDVRAMLS 587


>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
 gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
          Length = 838

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 209/687 (30%), Positives = 353/687 (51%), Gaps = 98/687 (14%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY--IFFKYHA 77
           LL  C +   ++Q+H++ +  G + ++ + TKL   +           ARY  I   +  
Sbjct: 145 LLETCCSKLSISQLHSQCLKAGLVHDSFIVTKLNVLY-----------ARYASIHHAHKL 193

Query: 78  FREK--KDPFLWNAIIKTYSHGLDPKEALVMFCLMLD-NGVSV----DKFSASLVLKACS 130
           F+E   +  +LWNA++++Y    +  E L +F  M + + VS+    D +S S+ LK+C+
Sbjct: 194 FQETPHRTVYLWNALLRSYCFEGEWVETLSLFRQMNNVSSVSIEERPDNYSVSIALKSCA 253

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
            L  +  G  IHG L+KV    D+F+ + LI LY +CG +  A ++F +    D V + S
Sbjct: 254 GLRKLLLGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTS 313

Query: 191 MIDGYVKSGNIESARELFDSMPIRER---NLISWNSVLNGYAQL---------------- 231
           +I GY +SG+ E A   F  M + E+   + ++  SV +  AQL                
Sbjct: 314 IISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRK 373

Query: 232 -----------------KSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALF 273
                            K+G ++ A  +F +M ++D+ISW++M+      G   D   LF
Sbjct: 374 GLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLF 433

Query: 274 DKM-PKRDVVSWANMI--------------------------------------DGYAKL 294
           ++M  KR   +W  ++                                      D Y K 
Sbjct: 434 NEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHELAVNYGFEMETTVSTALMDMYMKC 493

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
              + A  LF+ MPK+DV+A   +  GY  NG   +++ +F NM       PD  +LV +
Sbjct: 494 FSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHESMWVFRNMLSS-GTRPDAIALVKI 552

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
           L+ I++LG + + V +H ++ K+ F  N   G +LI++Y+KC SIE+A KVF+ +    V
Sbjct: 553 LTTISELGILQQAVCLHAFVIKNGFENNQFIGASLIEVYAKCSSIEDANKVFKGMTYKDV 612

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLS-IEPDDITFTGLLNACAHAGLVKEGLLCFE 473
             W+++I     HG GE A  L  +M   S  +P+++TF  +L+AC+H+GL+KEG+  F+
Sbjct: 613 VTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNNVTFISILSACSHSGLIKEGINMFD 672

Query: 474 LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENL 533
           +M   +KL+P  +HY  MVD+LGR G ++ A ++I +MPM+    IW  LL ACR ++N+
Sbjct: 673 IMVNKYKLKPNSEHYAIMVDLLGRMGELDMALDVINNMPMQAGPDIWGALLGACRIHQNI 732

Query: 534 NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
            +GE  AK+L  +D +++  Y+LLSN+++    W+ A ++R ++KE+ L K+ G S +EL
Sbjct: 733 KMGEVAAKNLFSLDPNHAGYYILLSNIYSVDENWHSATKLRRLVKEKRLNKIVGQSVVEL 792

Query: 594 EGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +  V  F   D+   +   IY +L  +
Sbjct: 793 KNEVRSFIAGDRIHDESDHIYEILTKL 819


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 189/555 (34%), Positives = 285/555 (51%), Gaps = 84/555 (15%)

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
           +D FLQN L+ LY + G L  AR LFDKM  RD  S+N+M+  Y KSGN+E  R +FD M
Sbjct: 56  TDTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQM 115

Query: 212 PIRERNLISWNSVLNGYA--------------------------------------QLKS 233
            + +   +S+N+V+ G++                                       +K 
Sbjct: 116 SVHD--AVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKR 173

Query: 234 GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAK 293
           G Q   +I        +  WN++ +   KCG +D A+ LFD+M  ++VVSW +MI GY +
Sbjct: 174 GKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQ 233

Query: 294 LGR-----------------------------------VDIARRLFDEMPKRDVVACNAM 318
            G+                                   +D A + F E+ ++D V    M
Sbjct: 234 NGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTM 293

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
           M G  +NG    AL +F  M  E  + PD+ ++  V+S+ A+L  + +G A+H       
Sbjct: 294 MVGCAQNGKEEDALLLFREMLLE-NVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFG 352

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
              +     AL+DMYSKCG   +A  VF+++   +V  WN+MI G A +G    A  L  
Sbjct: 353 VDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYE 412

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
           EM   +++PD+ITF G+L+AC HAGLV+ G   F  + +IH + P   HY CM+++LGRA
Sbjct: 413 EMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRA 472

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           G+++ A +LI+ M  EPN +IW TLLS CR   ++N GE  A+HL  +D  N+  Y++LS
Sbjct: 473 GYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLS 532

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           N++A  G W D   VRS+MK   +KK    SWIE++  VH+F   D++  +   IY  L+
Sbjct: 533 NIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEELN 592

Query: 619 NM--------WTPDS 625
            +        +TPD+
Sbjct: 593 RLIKKLQESGFTPDT 607


>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 709

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 204/620 (32%), Positives = 325/620 (52%), Gaps = 65/620 (10%)

Query: 25  KTLNDVNQIHARMITTGFIKNT---HLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREK 81
           ++LN    +H   IT+G + +    HL + L  S++   C PL   AR +F       + 
Sbjct: 93  RSLNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPL---ARKLF------DDL 143

Query: 82  KDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNG-VSVDKFSASLVLKACSRLGLIEEG 138
            DP  FLWNAIIK Y       +AL +F  M+ +G    DK++  LV+KACS + ++  G
Sbjct: 144 SDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKACSVMSMLNVG 203

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
           + IHG      F S++F+QN L+++Y+ CG +  ARQ+F+ M  R  VS+N+MI G+ ++
Sbjct: 204 VLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQN 263

Query: 199 GNIESARELFDSM---------------------------PIRERNLISWN------SVL 225
           G  E A  +F+SM                            I+   L+  N       V 
Sbjct: 264 GRPEEALAVFNSMMDARVEPDSATIVSALPSCGYLKELELGIKVHKLVQKNHLQEKIEVR 323

Query: 226 NGYAQLKS---GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV 282
           N    + S   G+  A  +F +  E+D+I+W SM++G +  G    A AL   M    VV
Sbjct: 324 NALVDMYSRCGGIDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVV 383

Query: 283 -----------SWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKA 331
                      + A++   YAK   V  + ++F +  K+  V  NA++ G + N  + +A
Sbjct: 384 PNAVTLASLLSACASLCYMYAKCNAVSYSFQVFAKTSKKRTVPWNALLSGLIHNELAREA 443

Query: 332 LEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALID 391
           + +F +M  E  +  + A+   V+ A A L  + + + +H YL +  F         LID
Sbjct: 444 VGLFKSMLIE-EVEANHATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLID 502

Query: 392 MYSKCGSIENAIKVFEQIEDGSVD--HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD 449
           MYSKCGS++ A K+F++I +   D   W+ +I G  +HG GE A  L  +M    ++P++
Sbjct: 503 MYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNE 562

Query: 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE 509
           ITFT +L+AC+H GLV +GL  F+ M   +   P   HY C+VD+LGRAG ++ A +LI+
Sbjct: 563 ITFTSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIK 622

Query: 510 DMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWND 569
            MP + N  IW  LL AC  ++N+ +GE  A+ L  ++  ++ +Y+LL+N++A +G W D
Sbjct: 623 SMPFQQNHSIWGALLGACLIHQNVELGEVAAERLFELEPESTGNYILLANIYAAVGRWKD 682

Query: 570 ARRVRSMMKERNLKKLPGCS 589
           A  VR +M +  L+K P  S
Sbjct: 683 AENVRHIMSKIGLRKTPAQS 702


>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Vitis vinifera]
          Length = 858

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 200/647 (30%), Positives = 337/647 (52%), Gaps = 59/647 (9%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+ C +L  +     +H  ++  GF     +++ LV  +    C  L E AR +F    
Sbjct: 188 VLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGK--CGVL-EDARKVFDSM- 243

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
               +K+   WN++I  Y      +EA+ +F  M   G+   + + +  L A + L  + 
Sbjct: 244 ---VEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALI 300

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           EG Q H +    +   D  L + +I+ Y + G +E A  +F +M  +D V++N +I  YV
Sbjct: 301 EGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYV 360

Query: 197 KSGNIESAREL----------FDSMPIR---------------------------ERNLI 219
           +   +  A  +          FDS+ +                            E +++
Sbjct: 361 QHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVV 420

Query: 220 SWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDA-----QALFD 274
             NS+++ YA+ +  +  A ++F+   ERDL+ WN++L    + G   +A     Q  FD
Sbjct: 421 VANSIIDMYAKCER-IDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFD 479

Query: 275 KMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP----KRDVVACNAMMGGYVRNGYSMK 330
            +P  +V+SW ++I G+ + G+V+ A+ +F +M     + +++    ++ G  ++G+  +
Sbjct: 480 SVPP-NVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYE 538

Query: 331 ALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI 390
           A+  F  MQ E  + P  AS+  VL A   +  +  G AIH ++ + +F L+     +L+
Sbjct: 539 AILFFQKMQ-EAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLV 597

Query: 391 DMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
           DMY+KCGSI+ A KVF  +    +  +NAMI+  A+HG    A  L   +++  IEPD I
Sbjct: 598 DMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSI 657

Query: 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIED 510
           TFT +L+AC+HAGLV EGL  F  M   H + P ++HYGC+V +L R G+++ A  LI  
Sbjct: 658 TFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILT 717

Query: 511 MPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDA 570
           MP +P+  I  +LL+ACR +  + +GE ++KHL  ++ SNS +YV LSN +A  G W + 
Sbjct: 718 MPFQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEV 777

Query: 571 RRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
             +R +MK R L+K PGCSWI+  G ++ F   D S  +  +IY ML
Sbjct: 778 SNMRDLMKVRGLRKNPGCSWIQTGGKLNVFVAGDGSHPKTEEIYAML 824



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 164/586 (27%), Positives = 278/586 (47%), Gaps = 72/586 (12%)

Query: 20  LLRKC---KTLNDVNQIHARMITTG--FIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
           LL+ C   + L+   QIHAR++  G  F KN ++ TKLV  ++        +F       
Sbjct: 85  LLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAK------CDFPEVAVRL 138

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
           +H  R  ++ F W AI+         ++AL+ F  M +NGV  D F    VLKAC  L L
Sbjct: 139 FHRLR-VRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQL 197

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           I  G  +HG + K+ FG+ +F+ + L+ +Y +CG LE AR++FD M  ++ V++NSMI G
Sbjct: 198 IGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVG 257

Query: 195 YVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQ----FAWQIFEKMPER 248
           YV++G  + A ++F  M +   E   ++  S L+  A L + ++     A  I   + + 
Sbjct: 258 YVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSL-DL 316

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           D I  +S+++   K G ++DA+ +F +M ++DVV+W                        
Sbjct: 317 DNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTW------------------------ 352

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG- 367
                  N ++  YV++    KAL +   M+ E  L  D  +L  +LSA A   +I  G 
Sbjct: 353 -------NLLISSYVQHHQVGKALNMCHLMRSE-NLRFDSVTLSSILSASAVTSNIKLGK 404

Query: 368 ----VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
                 I R LE D    N     ++IDMY+KC  I++A KVF+   +  +  WN ++  
Sbjct: 405 EGHCYCIRRNLESDVVVAN-----SIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAA 459

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
            A  GL   A  L  +M+  S+ P+ I++  ++      G V E    F  M+ +   +P
Sbjct: 460 YAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSL-GFQP 518

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMP---MEPNDVIWRTLLSACRNYENLNVGEP-- 538
            L  +  ++  L ++G    A    + M    + P+     ++L AC +  +L  G    
Sbjct: 519 NLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIH 578

Query: 539 --VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
             + +H   +    ++S V   +M+A  G  ++A++V  MM  + L
Sbjct: 579 GFITRHEFCLSVPVATSLV---DMYAKCGSIDEAKKVFHMMSSKEL 621


>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05750, chloroplastic-like [Cucumis sativus]
          Length = 525

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 164/450 (36%), Positives = 271/450 (60%), Gaps = 9/450 (2%)

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKS- 233
           F+   +   V + S +  Y ++G +  A   F  M +   E N I++ ++L+  A   S 
Sbjct: 49  FNPNSVDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSE 108

Query: 234 GLQFAWQIFEKMPERDLISWNSMLHGCV-----KCGKMDDAQALFDKMPKRDVVSWANMI 288
              FA  +     +  L + + M+   +     KC ++  A+ +F  +  ++ VSW  M+
Sbjct: 109 SFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTML 168

Query: 289 DGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD 348
           +G+ + G +++A +LFDEMP RD ++  A++ G +++GYS +ALE F  MQ    +  D 
Sbjct: 169 NGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQ-RSGVAADY 227

Query: 349 ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ 408
            S++ VL+A A LG +  G+ +HR++   +F  N K   +LIDMYS+CG IE A +VF +
Sbjct: 228 VSIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVK 287

Query: 409 IEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
           +   ++  WN++I G A++G  + + +    M++   +PD +++TG L AC+HAGLV +G
Sbjct: 288 MAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKG 347

Query: 469 LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACR 528
           L  F+ M+ +HK+ P ++HYGC+VD+ GRAG +E A N+IE+MPM+PN+V+  +LL+ACR
Sbjct: 348 LELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACR 407

Query: 529 NYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGC 588
            + ++N+ E + KHL  +D    + YVLLSN++A +G W+ A  VR  MK R ++K PG 
Sbjct: 408 THGDVNLAERLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGY 467

Query: 589 SWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           S +E++G VHEF   D       +IY MLD
Sbjct: 468 SSVEIDGKVHEFVAGDNYHADADNIYSMLD 497



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 129/479 (26%), Positives = 229/479 (47%), Gaps = 69/479 (14%)

Query: 50  TKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPF-LWNAIIKTYSHGLDPKEALVMFC 108
           TKL  +F  SP +P     R I  K++      DP  LW + +  Y       EA   F 
Sbjct: 30  TKL--NFPRSPNSP----HRNISSKFNP--NSVDPIVLWTSSLARYCRNGQLSEAAAEFT 81

Query: 109 LMLDNGVSVDKFSASLVLKACSRLGLIEEGL----QIHGLLRKVAFGSD-LFLQNCLISL 163
            M   GV  +  +   +L AC+      E       +HG   K    +  + +   LI +
Sbjct: 82  RMRLAGVEPNHITFITLLSACADFP--SESFFFASSLHGYACKYGLDTGHVMVGTALIDM 139

Query: 164 YVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNS 223
           Y +C  L  AR++F  +G+++SVS+N+M++G++++G IE A +LFD MP R+   ISW +
Sbjct: 140 YSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDA--ISWTA 197

Query: 224 VLNGYAQLKSGL-QFAWQIFEKMPER----DLISWNSMLHGCVKCGKMDDAQALFD-KMP 277
           ++NG   LK G  + A + F +M       D +S  ++L  C   G +     +    MP
Sbjct: 198 LINGL--LKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMP 255

Query: 278 K--RDVVSWAN-MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEI 334
           +  +D +  +N +ID Y++ G ++ AR++F +M KR +V+ N+++ G+  NG++ ++LE 
Sbjct: 256 QEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEF 315

Query: 335 FDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK-DQFSLNGKHGVALIDMY 393
           F  MQ E +  PD  S    L+A +  G ++KG+ +   ++   + +   +H   ++D+Y
Sbjct: 316 FXAMQKEGF-KPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLY 374

Query: 394 SKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
            + G +E+A+ + E+                                  + ++P+++   
Sbjct: 375 GRAGRLEDALNMIEE----------------------------------MPMKPNEVVLG 400

Query: 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ-HYGCMVDILGRAGHIEAARNLIEDM 511
            LL AC   G V    L   LM+ + KL+PE   +Y  + +I    G  + A N+   M
Sbjct: 401 SLLAACRTHGDVN---LAERLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTM 456


>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Cucumis sativus]
          Length = 525

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 164/450 (36%), Positives = 271/450 (60%), Gaps = 9/450 (2%)

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKS- 233
           F+   +   V + S +  Y ++G +  A   F  M +   E N I++ ++L+  A   S 
Sbjct: 49  FNPNSVDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSE 108

Query: 234 GLQFAWQIFEKMPERDLISWNSMLHGCV-----KCGKMDDAQALFDKMPKRDVVSWANMI 288
              FA  +     +  L + + M+   +     KC ++  A+ +F  +  ++ VSW  M+
Sbjct: 109 SFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTML 168

Query: 289 DGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD 348
           +G+ + G +++A +LFDEMP RD ++  A++ G +++GYS +ALE F  MQ    +  D 
Sbjct: 169 NGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQ-RSGVAADY 227

Query: 349 ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ 408
            S++ VL+A A LG +  G+ +HR++   +F  N K   +LIDMYS+CG IE A +VF +
Sbjct: 228 VSIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVK 287

Query: 409 IEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
           +   ++  WN++I G A++G  + + +    M++   +PD +++TG L AC+HAGLV +G
Sbjct: 288 MAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKG 347

Query: 469 LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACR 528
           L  F+ M+ +HK+ P ++HYGC+VD+ GRAG +E A N+IE+MPM+PN+V+  +LL+ACR
Sbjct: 348 LELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACR 407

Query: 529 NYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGC 588
            + ++N+ E + KHL  +D    + YVLLSN++A +G W+ A  VR  MK R ++K PG 
Sbjct: 408 THGDVNLAERLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGY 467

Query: 589 SWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           S +E++G VHEF   D       +IY MLD
Sbjct: 468 SSVEIDGKVHEFVAGDNYHADADNIYSMLD 497



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 129/479 (26%), Positives = 229/479 (47%), Gaps = 69/479 (14%)

Query: 50  TKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPF-LWNAIIKTYSHGLDPKEALVMFC 108
           TKL  +F  SP +P     R I  K++      DP  LW + +  Y       EA   F 
Sbjct: 30  TKL--NFPRSPNSP----HRNISSKFNP--NSVDPIVLWTSSLARYCRNGQLSEAAAEFT 81

Query: 109 LMLDNGVSVDKFSASLVLKACSRLGLIEEGL----QIHGLLRKVAFGSD-LFLQNCLISL 163
            M   GV  +  +   +L AC+      E       +HG   K    +  + +   LI +
Sbjct: 82  RMRLAGVEPNHITFITLLSACADFP--SESFFFASSLHGYACKYGLDTGHVMVGTALIDM 139

Query: 164 YVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNS 223
           Y +C  L  AR++F  +G+++SVS+N+M++G++++G IE A +LFD MP R+   ISW +
Sbjct: 140 YSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDA--ISWTA 197

Query: 224 VLNGYAQLKSGL-QFAWQIFEKMPER----DLISWNSMLHGCVKCGKMDDAQALFD-KMP 277
           ++NG   LK G  + A + F +M       D +S  ++L  C   G +     +    MP
Sbjct: 198 LINGL--LKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMP 255

Query: 278 K--RDVVSWAN-MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEI 334
           +  +D +  +N +ID Y++ G ++ AR++F +M KR +V+ N+++ G+  NG++ ++LE 
Sbjct: 256 QEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEF 315

Query: 335 FDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK-DQFSLNGKHGVALIDMY 393
           F  MQ E +  PD  S    L+A +  G ++KG+ +   ++   + +   +H   ++D+Y
Sbjct: 316 FYAMQKEGF-KPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLY 374

Query: 394 SKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
            + G +E+A+ + E+                                  + ++P+++   
Sbjct: 375 GRAGRLEDALNMIEE----------------------------------MPMKPNEVVLG 400

Query: 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ-HYGCMVDILGRAGHIEAARNLIEDM 511
            LL AC   G V    L   LM+ + KL+PE   +Y  + +I    G  + A N+   M
Sbjct: 401 SLLAACRTHGDVN---LAERLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTM 456



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 136/302 (45%), Gaps = 42/302 (13%)

Query: 82  KDPFLWNAIIKTY-SHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +D   W A+I     HG   ++AL  F  M  +GV+ D  S   VL AC+ LG +  GL 
Sbjct: 190 RDAISWTALINGLLKHGYS-EQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLW 248

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  +    F  ++ + N LI +Y RCG +EFARQ+F KM  R  VS+NS+I G+  +G 
Sbjct: 249 VHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGF 308

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
            + + E F                   YA  K G +            D +S+   L  C
Sbjct: 309 ADESLEFF-------------------YAMQKEGFK-----------PDGVSYTGALTAC 338

Query: 261 VKCGKMDDAQALFDKMPKRDVVS-----WANMIDGYAKLGRVDIARRLFDEMP-KRDVVA 314
              G ++    LFD M     ++     +  ++D Y + GR++ A  + +EMP K + V 
Sbjct: 339 SHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVV 398

Query: 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI-AQLGHIDKGVAIHRY 373
             +++     +G    A  +  ++     L P+  +  ++LS I A +G  D    + R 
Sbjct: 399 LGSLLAACRTHGDVNLAERLMKHL---FKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRT 455

Query: 374 LE 375
           ++
Sbjct: 456 MK 457


>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 568

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 174/503 (34%), Positives = 292/503 (58%), Gaps = 12/503 (2%)

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           LK C ++  ++   +IH  + K++     FL   ++      G++ +A  LF ++   + 
Sbjct: 17  LKNCFKITQLK---KIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHPNI 73

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNLI-----SWNSVL---NGYAQLKSGLQF 237
            +YN++I  Y  + +  SA  +F  M     N +     ++  V+    G    + G+Q 
Sbjct: 74  FTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQV 133

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
              +++   +   I+ N+++    K G + +A  +F++M  RDV+SW ++I GY KLG++
Sbjct: 134 HGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQM 193

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
           + AR LFD+MP R +V+   M+ GY R G    AL++F  MQ  + + PD+ S++ VL A
Sbjct: 194 NSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQM-VGIEPDEISIIAVLPA 252

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
            AQLG ++ G  IH Y +K+ F        ALI+MY+KCG I+ A  +F+Q+ +  V  W
Sbjct: 253 CAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVISW 312

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
           + MI GLA HG G  A  L  EM ++ + P++ITF G+L AC+H GL  EGL  F++M  
Sbjct: 313 STMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSA 372

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
            + +EPE++HYGC++D+LGR+G +  A + I  MP++P+  IW +LLS+CR + NL +  
Sbjct: 373 SYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNLQIAV 432

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVV 597
              K L+ ++   S +YVLL+NM+A  G W D   +R +++ + +KK PG S IE+  VV
Sbjct: 433 IAVKQLMELEPEESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIKKTPGSSSIEVNNVV 492

Query: 598 HEFFVRDKSRLQVRDIYYMLDNM 620
            EF   D S+   ++++++L+ +
Sbjct: 493 QEFVSSDDSKPFSQEVFWILEGL 515



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 130/443 (29%), Positives = 231/443 (52%), Gaps = 39/443 (8%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L+ C  +  + +IHA ++     ++  L TK++ S     C  L     ++ +    F++
Sbjct: 17  LKNCFKITQLKKIHAHVVKLSLSQSNFLVTKMLDS-----CDNLG----HVSYATLLFKQ 67

Query: 81  KKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLD---NGVSVDKFSASLVLKACSRLGLI 135
              P  F +NAII+TY+H      A+ +F  ML    N V  DKF+   V+K+C+ +   
Sbjct: 68  LLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCH 127

Query: 136 EEGLQIHGLLRKVAFGSDL--FLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMID 193
             G+Q+HGL+ K  FG+D     +N LI +Y + G L  A ++F++M  RD +S+NS+I 
Sbjct: 128 RLGMQVHGLVYK--FGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIF 185

Query: 194 GYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERD 249
           GYVK G + SARELFD MP+  R ++SW +++ GY ++      A  +F +M     E D
Sbjct: 186 GYVKLGQMNSARELFDDMPV--RTIVSWTTMITGYGRMGC-YGDALDVFREMQMVGIEPD 242

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN----MIDGYAKLGRVDIARRLFD 305
            IS  ++L  C + G ++  + +     K   +        +I+ YAK G +D A  LFD
Sbjct: 243 EISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFD 302

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
           ++ ++DV++ + M+GG   +G   +A+++F+ M C++ + P++ + + VL A +  G  D
Sbjct: 303 QLVEKDVISWSTMIGGLANHGKGYEAIQLFEEM-CKVRVAPNEITFLGVLLACSHTGLWD 361

Query: 366 KGVAIHRYLEKD-QFSLNGKHGVALIDMYSKCGSIENAIKVFEQI---EDGSVDHWNAMI 421
           +G+     +          +H   LID+  + G +  A+    ++    D  +  WN+++
Sbjct: 362 EGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRI--WNSLL 419

Query: 422 NGLAIH---GLGELAFDLLMEME 441
           +   IH    +  +A   LME+E
Sbjct: 420 SSCRIHRNLQIAVIAVKQLMELE 442


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 197/593 (33%), Positives = 304/593 (51%), Gaps = 44/593 (7%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFF-KYHAFREKKDPFLWNAII 91
           +HA  I  G+  N  + + LV  +         +F+R ++  K      ++D  LWN +I
Sbjct: 130 LHAHSIIDGYGSNVFVGSALVDLYC--------KFSRVVYARKVFDGMPERDTVLWNTMI 181

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
                     +++ +F  M+ +GV VD  + + VL A + L  ++ G+ I  L  K+ FG
Sbjct: 182 NGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFG 241

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
              ++   LISLY +CG +  AR LF ++   D ++YN+MI G+  +G  E + +LF  +
Sbjct: 242 FCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFREL 301

Query: 212 PIRERNLISWNSVLNGYAQLKSG---LQFAWQIFEKMPERDLISWNSMLHG-CVKCGKMD 267
                 + S  S + G   L S    L  A  I                HG CVK G + 
Sbjct: 302 LFSGERVSS--STIVGLIPLHSPFGHLHLACSI----------------HGFCVKSGIIL 343

Query: 268 DAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGY 327
           +             VS A     Y KL  +D+AR LFDE P++ VVA NAM+ GY +NG 
Sbjct: 344 NP-----------TVSTA-FTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGS 391

Query: 328 SMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV 387
           +  A+ +F  M  +    P+  ++  +LSA AQLG +  G  +H  ++ +    N     
Sbjct: 392 TETAISLFKEMM-KTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVST 450

Query: 388 ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP 447
           AL+DMY+KCG+I  A ++F+ + + +   WN MI G  +HG G  A  L  EM  L   P
Sbjct: 451 ALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNP 510

Query: 448 DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNL 507
             +TF  +L AC+HAGLV EG   F  M   +++EP ++HY CMVDILGR+G +E A   
Sbjct: 511 SAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEF 570

Query: 508 IEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMW 567
           I+ MP+EP   +W TLL AC  +++ ++    ++ L  +D  +   YVLLSN+++    +
Sbjct: 571 IKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNF 630

Query: 568 NDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
             A  +R ++K+R L K PGC+ IE+ G  H F   D+S     DIY  L+ +
Sbjct: 631 PKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDIYAKLEKL 683



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 3/170 (1%)

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           AR LF  +PK D+   N ++ G+  N     ++ ++ +++    L PD+ +    ++A +
Sbjct: 63  ARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACS 122

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
              H+   + +H +   D +  N   G AL+D+Y K   +  A KVF+ + +     WN 
Sbjct: 123 NDKHL---MLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNT 179

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
           MINGL  +   + +  L  EM    +  D  T T +L A A    +K G+
Sbjct: 180 MINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGM 229


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 198/619 (31%), Positives = 332/619 (53%), Gaps = 63/619 (10%)

Query: 14  TQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFF 73
           T+  L L+++CK+ N + QIHA+M+     K   L +K++     +       +A  +F 
Sbjct: 33  TEKLLSLIKQCKSKNLLKQIHAQMLINSIPKPNFLLSKIIDLKDLA-------YASLVFN 85

Query: 74  KYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLML-----DNGVSVDKFSASLVLKA 128
           +      K + + +N +++    GL        FC+ L       G+  + F+   +  A
Sbjct: 86  QL----TKPNIYAFNVMLR----GLATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIA 137

Query: 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY 188
           C  +  +  G   H L+ K     D ++ + LI++Y RCG + FA               
Sbjct: 138 CGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFA--------------- 182

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQL---KSGLQFAWQIFEKM 245
                           R++FD M   +R+L+SWNS+++GY+++   K  +    ++ E+ 
Sbjct: 183 ----------------RKVFDEMG--DRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEG 224

Query: 246 PERDLISWNSMLHGCVKCGKMDDAQAL--FDKMPKRDVVSW--ANMIDGYAKLGRVDIAR 301
            E D ++  S+L  C   G +   + +  F    K +V S+  + +ID Y K G +  AR
Sbjct: 225 FEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISAR 284

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
           R+FD MP +DVV  NA++ GY +NG S +A+ +F+ M+ E   HPD  +++ VLSA + +
Sbjct: 285 RVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMR-EAGPHPDRVTMIEVLSACSTI 343

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
           G +D G  +  +  +     +     ALIDMY+KCGS+++A++VFE +   +   WNAMI
Sbjct: 344 GALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMI 403

Query: 422 NGLAIHGLGELAFDLLMEMER--LSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           + LA HG  + A  L   M +   +++P+DITF G+L+AC HAGLV EG   FE M    
Sbjct: 404 SALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSF 463

Query: 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPV 539
            L P+++HY CMVD+  RAG +  A +LI+ MP +P++++  +LL AC+   N +VGE V
Sbjct: 464 GLVPKVEHYSCMVDLCARAGLLYEAWDLIKKMPGKPDEIVLGSLLGACQRRRNADVGERV 523

Query: 540 AKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHE 599
            +  + M+ SNS +YV+ S ++A +  W+D+ ++R +M++  + K PGCSWI++   VHE
Sbjct: 524 IQLFLEMELSNSGNYVISSKIYANMRRWDDSAKMRVLMRQCGVSKTPGCSWIDIGAHVHE 583

Query: 600 FFVRDKSRLQVRDIYYMLD 618
           F   D       +IY +L+
Sbjct: 584 FHAGDSLHNHSMNIYQLLN 602


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 188/552 (34%), Positives = 298/552 (53%), Gaps = 50/552 (9%)

Query: 82  KDPFLWNAIIKTY-SHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +D   WN++I  Y S+GL  K  L +F  ML  G++ D  +   V+  CS  G++  G  
Sbjct: 214 RDVISWNSMISGYVSNGLSEK-GLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRA 272

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +HG   K +FG +L L NCL+                               D Y KSGN
Sbjct: 273 LHGYAIKASFGKELTLNNCLL-------------------------------DMYSKSGN 301

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQ-FAWQIFEKMPER----DLISWNS 255
           + SA ++F++M   ER+++SW S++ GYA  + GL   + ++F +M +     D+ +  +
Sbjct: 302 LNSAIQVFETMG--ERSVVSWTSMIAGYA--REGLSDMSVRLFHEMEKEGISPDIFTITT 357

Query: 256 MLHGCVKCGKMDDAQALFD-----KMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
           +LH C   G +++ + + +     KM     VS A ++D YAK G +  A  +F EM  +
Sbjct: 358 ILHACACTGLLENGKDVHNYIKENKMQSDLFVSNA-LMDMYAKCGSMGDAHSVFSEMQVK 416

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
           D+V+ N M+GGY +N    +AL +F  MQ      P+  ++  +L A A L  +++G  I
Sbjct: 417 DIVSWNTMIGGYSKNSLPNEALNLFVEMQ--YNSKPNSITMACILPACASLAALERGQEI 474

Query: 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
           H ++ ++ FSL+     AL+DMY KCG++  A  +F+ I +  +  W  MI G  +HG G
Sbjct: 475 HGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYG 534

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
             A     EM    IEPD+++F  +L AC+H+GL+ EG   F +MR    +EP+ +HY C
Sbjct: 535 SEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYAC 594

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           +VD+L RAG++  A   I+ MP+EP+  IW  LL  CR Y ++ + E VA+H+  ++  N
Sbjct: 595 IVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPEN 654

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQV 610
           +  YVLL+N++A    W + +++R  +  R L+K PGCSWIE++G VH F   D S    
Sbjct: 655 TGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLA 714

Query: 611 RDIYYMLDNMWT 622
             I  +L    T
Sbjct: 715 NKIELLLKKTRT 726



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 129/453 (28%), Positives = 218/453 (48%), Gaps = 63/453 (13%)

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKS---GLQFAWQIFEK 244
           YN  I  + + GN+  A EL +  P  +  L ++ SVL   A LKS   G +    I   
Sbjct: 71  YNIEICRFCELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSN 130

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG--------- 295
             E D +  + ++   V CG + + + +FDK+    V  W  +++GYAK+G         
Sbjct: 131 DVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLF 190

Query: 296 ---------RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP 346
                    RV+ AR+LFDE+  RDV++ N+M+ GYV NG S K L++F+ M   L ++ 
Sbjct: 191 KRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLL-LGINT 249

Query: 347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVF 406
           D A++V V++  +  G +  G A+H Y  K  F         L+DMYSK G++ +AI+VF
Sbjct: 250 DLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVF 309

Query: 407 EQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVK 466
           E + + SV  W +MI G A  GL +++  L  EME+  I PD  T T +L+ACA  GL++
Sbjct: 310 ETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLE 369

Query: 467 EGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPM------------- 513
            G      ++  +K++ +L     ++D+  + G +  A ++  +M +             
Sbjct: 370 NGKDVHNYIKE-NKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGY 428

Query: 514 --------------------EPNDVIWRTLLSACRNYENLNVGEPVAKHLI----GMDSS 549
                               +PN +    +L AC +   L  G+ +  H++     +D  
Sbjct: 429 SKNSLPNEALNLFVEMQYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRH 488

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
            +++ V   +M+   G    AR +  M+ E++L
Sbjct: 489 VANALV---DMYLKCGALGLARLLFDMIPEKDL 518


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 208/600 (34%), Positives = 319/600 (53%), Gaps = 54/600 (9%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L  CK+++ + QIH   I T  +   +L  KL+   SSS  +P   + R I    H+   
Sbjct: 13  LNSCKSISHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYIRSILLT-HSHDA 71

Query: 81  KKDPFLWNAIIKTYSHG---LDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
           +    L NAII++ S     L P E L     ML  G+  D F+  LVLKA + +  I E
Sbjct: 72  QFCLSLCNAIIRSISRNSINLSPMEFLNE---MLVVGLEPDGFTIPLVLKALALIQGIRE 128

Query: 138 GLQIHGLLRKVAF-GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           G QIH    K    G ++++ N L+ LY  CG                            
Sbjct: 129 GQQIHARSIKTGMVGFNVYVSNTLMRLYSVCG---------------------------- 160

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPE----RDLI 251
              +I   +++FD  P   R+L+SW +++  +   K+GL   A + F +M +     D  
Sbjct: 161 ---SIHDVQKVFDECP--HRDLVSWTTLIQAFT--KAGLYSRAVEAFMEMCDLRLRADGR 213

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMP-----KRDVVSWANMIDGYAKLGRVDIARRLFDE 306
           +   +L  C   G ++  Q +   +      K DV     ++D Y K   ++ A ++FDE
Sbjct: 214 TLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDE 273

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           MP ++VV  NAM+ G    G   +AL+ F  MQ +  + PD+ +LV VL++ A LG ++ 
Sbjct: 274 MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQ-DKGVKPDEVTLVGVLNSCANLGVLEI 332

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G  +H Y+ ++    +   G AL+DMY+KCGSI+ A +VFE ++   V  + AMI GLA+
Sbjct: 333 GKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLAL 392

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           HG    AF +  EM R+ IEP+++TF GLL AC+H GLV EG   F  M   +KL P+ +
Sbjct: 393 HGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAE 452

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HYGCM+D+LGRAG ++ A  +I  M + P+      LL ACR + N+++GE V + L  +
Sbjct: 453 HYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTEL 512

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           D     +Y+L++N+++ +  W DA ++R  MK + ++K PGCS IE++GVVHEF   DKS
Sbjct: 513 DPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDKS 572


>gi|297830850|ref|XP_002883307.1| hypothetical protein ARALYDRAFT_318888 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329147|gb|EFH59566.1| hypothetical protein ARALYDRAFT_318888 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 523

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 182/511 (35%), Positives = 298/511 (58%), Gaps = 12/511 (2%)

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS-RLGLIEEGLQIHGLLRKV 148
           +IK +     P +ALV++  +   GV    +   L+LKAC+  +  +  G  +H    K 
Sbjct: 17  LIKNHISRGSPIQALVLYGGIRRRGVYFPGW-VPLILKACACVVPRVVLGKLLHSESIKF 75

Query: 149 AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELF 208
              SD+ + + LIS+Y + G +  AR++FD+M  R+  ++N+MI GY+ +G+  SA  LF
Sbjct: 76  GVCSDVMVGSSLISMYGKWGCVVSARKVFDEMPERNVATWNAMIGGYMGNGDAVSASGLF 135

Query: 209 DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP--ERDLISWNSMLHGCVKCGKM 266
           + + +  RN ++W  ++ GY + K  ++ A ++FE+MP   +++ +W+ ML   V   KM
Sbjct: 136 EEISVC-RNTVTWIEMMKGYGKRKE-IEKARELFERMPFELKNVKAWSVMLGVYVSHRKM 193

Query: 267 DDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNG 326
           +DA+  F+ +P+++   W+ MI GY ++G V  A  +F  +  RD+V  N ++ GY +NG
Sbjct: 194 EDARKFFEDIPEKNSFVWSLMISGYFRIGDVHEATSVFYRVFARDLVIWNTLITGYAQNG 253

Query: 327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG 386
           YS  A++ F NMQ E Y  PD  ++  VLSA AQ G +D G  +H  + +    LN    
Sbjct: 254 YSGDAIDAFYNMQGEGY-EPDAVTVSSVLSACAQSGRLDVGREVHSLINRKGIELNQFVS 312

Query: 387 VALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE 446
            ALIDMY+KCG +ENA  VFE +   S+  WN+MI+ LAIHG G  A ++   M  L ++
Sbjct: 313 NALIDMYAKCGDLENATSVFESLSLRSLACWNSMISCLAIHGKGNEALEMFRTMGSLDLK 372

Query: 447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARN 506
           PD+ITF  +L AC H G + EGL  F  M +   ++P ++H+GC++ +LGR+G ++ A  
Sbjct: 373 PDEITFLAVLTACVHGGFLMEGLKIFSEM-KTQDVKPNVKHFGCLIHLLGRSGKLKEAYR 431

Query: 507 LIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS----YVLLSNMFA 562
           L+ +MP++PND +   LL AC+ + +  + E V K ++ + S  +S        +SN++A
Sbjct: 432 LVREMPVKPNDTVLGALLGACKVHMDTEIAEQVMKIIVTVGSITNSDCENHLASISNLYA 491

Query: 563 GLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
               W  A  +R  M++R L+K PG S + L
Sbjct: 492 HTERWETAEALRVEMEKRGLEKSPGLSSVVL 522



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 113/259 (43%), Gaps = 39/259 (15%)

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           A  +F++  A    +D  +WN +I  Y+      +A+  F  M   G   D  + S VL 
Sbjct: 227 ATSVFYRVFA----RDLVIWNTLITGYAQNGYSGDAIDAFYNMQGEGYEPDAVTVSSVLS 282

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           AC++ G ++ G ++H L+ +     + F+ N LI +Y +CG LE A  +F+ + +R    
Sbjct: 283 ACAQSGRLDVGREVHSLINRKGIELNQFVSNALIDMYAKCGDLENATSVFESLSLRSLAC 342

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
           +NSMI      G    A E+F +M               G   LK               
Sbjct: 343 WNSMISCLAIHGKGNEALEMFRTM---------------GSLDLKP-------------- 373

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS----WANMIDGYAKLGRVDIARRL 303
            D I++ ++L  CV  G + +   +F +M  +DV      +  +I    + G++  A RL
Sbjct: 374 -DEITFLAVLTACVHGGFLMEGLKIFSEMKTQDVKPNVKHFGCLIHLLGRSGKLKEAYRL 432

Query: 304 FDEMP-KRDVVACNAMMGG 321
             EMP K +     A++G 
Sbjct: 433 VREMPVKPNDTVLGALLGA 451


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 194/609 (31%), Positives = 326/609 (53%), Gaps = 44/609 (7%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+ C  L+ +   N +HA+++  GF  +T ++T L+  ++      L E      +K  
Sbjct: 177 ILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYA-----KLQEIEDS--YKVF 229

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
               + +   WNA+I  ++      +A  +F  M+  GV+ D  +   V KA   L  + 
Sbjct: 230 NTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVN 289

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI--RDSVSYNSMIDG 194
           +  ++ G   ++   S+  +   LI +  +CG L+ AR +F+   I  R +  +N+MI G
Sbjct: 290 KAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISG 349

Query: 195 YVKSGNIESARELFDSMPIRERNL--ISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLIS 252
           Y++SG  E A ELF  M   +  L   ++ SV N  A LK                    
Sbjct: 350 YLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALK-------------------- 389

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMI-DGYAKLGRVDIARRLFDEMPKRD 311
                  C+  GK   A+A+   + + + VS +N + + YAK G ++  R++F+ M  RD
Sbjct: 390 -------CLSLGKKVHARAIKSGL-EVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRD 441

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           +++  +++  Y +     KA+EIF NM+ E  + P+  +   VL + A L  ++ G  +H
Sbjct: 442 LISWTSLVTAYSQCSEWDKAIEIFSNMRAE-GIAPNQFTFSSVLVSCANLCLLEYGQQVH 500

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
             + K    ++     AL+DMY+KCG + +A KVF +I +     W A+I G A HG+ +
Sbjct: 501 GIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVD 560

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            A  L   M +L +EP+ +TF  +L AC+H GLV+EGL  F+LM++ + L PE++HY C+
Sbjct: 561 DALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACI 620

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551
           VD+L R GH+  A   I  MP+EPN+++W+TLL ACR + N+ +GE  A+ ++   + NS
Sbjct: 621 VDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENS 680

Query: 552 SSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVR 611
           ++YVLLSN +   G + D   +R +MKE+ +KK PGCSWI + G +H+F+  D+   +  
Sbjct: 681 ATYVLLSNTYIESGSYKDGLSLRHLMKEQGVKKEPGCSWISVNGTLHKFYAGDQQHPEKD 740

Query: 612 DIYYMLDNM 620
            IY  L+ +
Sbjct: 741 KIYAKLEEL 749



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 163/399 (40%), Gaps = 79/399 (19%)

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
            Y+K   +D A RLFD+M +R+  +   ++ G   NG  +   E F  MQ +  + PD  
Sbjct: 114 AYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQ-GIFPDQF 172

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           +   +L     L  I+ G  +H  +    F+ +     AL++MY+K   IE++ KVF  +
Sbjct: 173 AYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTM 232

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
            + +V  WNAMI G   + L   AFDL + M    + PD  TF G+  A           
Sbjct: 233 TEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIG--------- 283

Query: 470 LCFELMRRIHKLEPELQHYG-------------CMVDILGRAGHIEAARNLIED------ 510
               ++R ++K + E+  Y               ++D+  + G ++ AR++         
Sbjct: 284 ----MLRDVNKAK-EVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCR 338

Query: 511 -------------------------MPMEPNDV-----IWRTLLSACRNYENLNVGEPVA 540
                                      M  ND+      + ++ +A    + L++G+ V 
Sbjct: 339 FNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVH 398

Query: 541 KHLI--GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVH 598
              I  G++ +  S    ++N +A  G   D R+V + M++R+L      SW  L     
Sbjct: 399 ARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDL-----ISWTSLVTAYS 453

Query: 599 EFFVRDK-----SRLQVRDIYYMLDNMWTPDSVATSCTH 632
           +    DK     S ++   I     N +T  SV  SC +
Sbjct: 454 QCSEWDKAIEIFSNMRAEGI---APNQFTFSSVLVSCAN 489



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 17/148 (11%)

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALID---- 391
           D     L + P    LV +L        + +   +H +L K +FS    H + L++    
Sbjct: 60  DKTDSHLQIQP----LVDLLRDCVDARFLKQAKTVHGFLLKSKFS--NHHSLVLLNHVAH 113

Query: 392 MYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDIT 451
            YSKC  I+ A ++F+Q+   +   W  +I GLA +GL    F+   EM+   I PD   
Sbjct: 114 AYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFA 173

Query: 452 FTGLLNACAHAGLVKEGLLCFELMRRIH 479
           ++G+L  C        GL   EL   +H
Sbjct: 174 YSGILQICI-------GLDSIELGNMVH 194


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 212/691 (30%), Positives = 339/691 (49%), Gaps = 91/691 (13%)

Query: 14  TQSTLLLLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY 70
           T+  L LLR C   K+L     IH +++T G   +  L   L+  + S     L + A+ 
Sbjct: 3   TRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLS---CHLYDHAKC 59

Query: 71  IFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG-VSVDKFSASLVLKAC 129
           +F          +  LWN ++  Y+      EAL +F  +L    +  D ++   V KAC
Sbjct: 60  VF---DNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKAC 116

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
             L     G  IH  L K     D+ + + L+ +Y +C   E A  LF++M  +D   +N
Sbjct: 117 GGLHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWN 176

Query: 190 SMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQL---------------- 231
           ++I  Y +SGN + A E F  M     E N ++  + ++  A+L                
Sbjct: 177 TVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINS 236

Query: 232 -----------------KSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALF 273
                            K G L+ A +IFE+MP++ +++WNSM+ G    G +     LF
Sbjct: 237 GFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLF 296

Query: 274 DKM---------------------------------------PKRDVVSWANMIDGYAKL 294
            +M                                        + DV   ++++D Y K 
Sbjct: 297 KRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKC 356

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
           G+V++A ++F  +PK  VV+ N M+ GYV  G   +AL +F  M+ + Y+  D  +   V
Sbjct: 357 GKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMR-KSYVESDAITFTSV 415

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
           L+A +QL  ++KG  IH  + + +   N     AL+DMY+KCG+++ A  VF+ +    +
Sbjct: 416 LTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDL 475

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
             W +MI     HG    A +L  EM + +++PD + F  +L+AC HAGLV EG   F  
Sbjct: 476 VSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQ 535

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV-IWRTLLSACRNYENL 533
           M  ++ + P ++HY C++D+LGRAG +  A  +++  P   +DV +  TL SACR + N+
Sbjct: 536 MINVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNI 595

Query: 534 NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
           ++G  +A+ LI  D  +SS+Y+LLSNM+A    W++ R VRS MKE  LKK PGCSWIE+
Sbjct: 596 DLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEI 655

Query: 594 EGVVHEFFVRDKSRLQVRDIY----YMLDNM 620
              +  FFV D S L +  ++    Y+ D+M
Sbjct: 656 NQKILPFFVEDNSHLHLELVFKCLSYLSDHM 686


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 197/609 (32%), Positives = 311/609 (51%), Gaps = 93/609 (15%)

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
           E AR++F K     +++D   W  +I  Y+      E+LV+F  M + GV  DK +   V
Sbjct: 210 EDARFLFDKM----QERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTV 265

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           + AC++LG + +   I   +++  F  D+ L                             
Sbjct: 266 VFACAKLGAMHKARIIDDYIQRKKFQLDVILGT--------------------------- 298

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM 245
               +MID Y K G +ESARE+FD M   E+N+ISW++++  Y     G + A  +F  M
Sbjct: 299 ----AMIDMYAKCGCVESAREIFDRM--EEKNVISWSAMIAAYGYHGQGRK-ALDLFRMM 351

Query: 246 PER----DLISWNSMLHGCVKCGKM----------------------------------- 266
                  D I+  S+L+ C+ C  +                                   
Sbjct: 352 LSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRAL 411

Query: 267 DDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN- 325
           DDA  LFD M  RD VSW+ M+ G+AK+G        F     R+++ C A    Y    
Sbjct: 412 DDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTF-----RELIRCGARPDNYTLPF 466

Query: 326 -GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK 384
            G + ++L +FD M+ E  + PD  ++V V+ A A+LG + K   I  Y+++ +F L+  
Sbjct: 467 CGNANESLVLFDKMREEGVV-PDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVI 525

Query: 385 HGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS 444
            G A+IDM++KCG +E+A ++F+++E+ +V  W+AMI     HG G  A DL   M R  
Sbjct: 526 LGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSG 585

Query: 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504
           I P+ IT   LL AC+HAGLV+EGL  F LM   + +  +++HY C+VD+LGRAG ++ A
Sbjct: 586 ILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEA 645

Query: 505 RNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL 564
             LIE M +E ++ +W   L ACR ++++ + E  A  L+ +   N   Y+LLSN++A  
Sbjct: 646 LKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANA 705

Query: 565 GMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM---- 620
           G W D  + R +M +R LKK+PG +WIE++   H+F V D +  + ++IY ML ++    
Sbjct: 706 GRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKL 765

Query: 621 ----WTPDS 625
               + PD+
Sbjct: 766 ELVGYVPDT 774



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 126/543 (23%), Positives = 216/543 (39%), Gaps = 103/543 (18%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L  C+ L  V Q+HA+    G ++N  +  KL+  +S         + R +   Y  F  
Sbjct: 88  LVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYS---------YYRALDDAYGLFDG 138

Query: 81  K--KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
              +D   W+ ++  ++   D       F  ++  G   D ++   V++AC  L      
Sbjct: 139 MCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLK----- 193

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
                            LQ  L+ +YV+C  +E AR LFDKM  RD V++  MI GY + 
Sbjct: 194 ----------------NLQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAEC 237

Query: 199 GNIESARELFDSMPIRERNLI--SWNSVLNGYAQLKSGLQFAWQIFEKMPER-----DLI 251
           G    +  LF+ M  RE  ++      V   +A  K G     +I +   +R     D+I
Sbjct: 238 GKANESLVLFEKM--REEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVI 295

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
              +M+    KCG ++ A+ +FD+M +++V+SW+ MI  Y                    
Sbjct: 296 LGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAY-------------------- 335

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
                    GY  +G   KAL++F  M     L PD  +L  +L A     ++ +   +H
Sbjct: 336 ---------GY--HGQGRKALDLFRMMLSSGML-PDKITLASLLYACINCRNLTQVRQVH 383

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
                     N      L+  YS   ++++A  +F+ +       W+ M+ G A  G   
Sbjct: 384 AQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYM 443

Query: 432 LAFDLLMEMERLSIEPDDIT--FTGLLN--------------------------ACAHAG 463
             F    E+ R    PD+ T  F G  N                          ACA  G
Sbjct: 444 NCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLG 503

Query: 464 LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTL 523
            + +     + ++R  K + ++     M+D+  + G +E+AR + + M  E N + W  +
Sbjct: 504 AMHKARTIDDYIQR-KKFQLDVILGTAMIDMHAKCGCVESAREIFDRME-EKNVISWSAM 561

Query: 524 LSA 526
           ++A
Sbjct: 562 IAA 564



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 136/319 (42%), Gaps = 74/319 (23%)

Query: 24  CKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREK-- 81
           C+ L  V Q+HA+    G ++N  +  KLV  +S         + R +   Y  F     
Sbjct: 373 CRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYS---------YYRALDDAYGLFDGMCV 423

Query: 82  KDPFLWNAIIKTYSH-----------------GLDP-----------KEALVMFCLMLDN 113
           +D   W+ ++  ++                  G  P            E+LV+F  M + 
Sbjct: 424 RDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREE 483

Query: 114 GVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFA 173
           GV  DK +   V+ AC++LG + +   I   +++  F  D+ L   +I ++ +CG +E A
Sbjct: 484 GVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESA 543

Query: 174 RQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKS 233
           R++FD+M  ++ +S+++MI  Y   G    A +LF  M                   L+S
Sbjct: 544 REIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMM-------------------LRS 584

Query: 234 GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALF-----DKMPKRDVVSWANMI 288
           G+         +P +  I+  S+L+ C   G +++    F     D   + DV  +  ++
Sbjct: 585 GI---------LPNK--ITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVV 633

Query: 289 DGYAKLGRVDIARRLFDEM 307
           D   + GR+D A +L + M
Sbjct: 634 DLLGRAGRLDEALKLIESM 652


>gi|225430506|ref|XP_002283354.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 517

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 182/525 (34%), Positives = 285/525 (54%), Gaps = 38/525 (7%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           WN +IK      +P +A++ +  M   G   D F+  ++LKA S L     G  +HG   
Sbjct: 22  WNKVIKRRVSQGNPDQAILAYVEMKRVGFDADNFTFPVLLKAASSLSSCCIGFALHGQAM 81

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           K  F    F+   L+                               D Y   G I+ A +
Sbjct: 82  KTGFSGHCFVGTALL-------------------------------DMYSAFGAIDHATK 110

Query: 207 LFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKM 266
           +F+ M +++  ++ WNS+L  YA     +  A ++F+ MP +DL S+N M+ G  K GK 
Sbjct: 111 VFEEMGVKD--VVVWNSMLAAYASCGQ-MDNAMKLFDNMPLKDLASFNIMISGYAKIGKK 167

Query: 267 DDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNG 326
             A+++FD++  +D+VSW +MI     +G +  AR LFD MPK++V+  N M+ GY+   
Sbjct: 168 AAARSIFDRIHAKDIVSWNSMILACTNVGDMGNARNLFDVMPKKNVITWNTMISGYLHAQ 227

Query: 327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG 386
              +A+++FD M+   +   D  ++ +VLSA A LG + KG  +H Y +  + + +    
Sbjct: 228 LYAEAVDLFDEMKAGNH-EADHLTVTLVLSACAHLGWLGKGTEMHVYAQDHRLASSPHVA 286

Query: 387 VALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE 446
            +LIDMY+KCG+I+ +++VF + +   +  WNA+I+GLA+HG G  A  LL +M    + 
Sbjct: 287 TSLIDMYAKCGTIQRSLEVFYKSQVKDIYCWNAIISGLALHGYGHAAVKLLDKMRDNGVR 346

Query: 447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARN 506
           PD+ITF GLL+AC+H  LV+EG   F+ M +   L P+L+HYGCMVD+LGRAG ++ A  
Sbjct: 347 PDEITFIGLLSACSHRSLVQEGCRLFDCMEKEFGLPPKLEHYGCMVDLLGRAGFLDPAFQ 406

Query: 507 LIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS--SYVLLSNMFAGL 564
           LI+ MP EP + I   LL AC  +++L  GE V  +LI   + + S   +++  N++A  
Sbjct: 407 LIKAMPFEPGESILGALLGACVIHQDLETGEKVI-NLITSKAHHVSDGEFMMFVNLYASC 465

Query: 565 GMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQ 609
           G W +A R R  M E  + K  G S IE++G  + F   D S  Q
Sbjct: 466 GQWKEANRWRERMNESGIAKTAGGSTIEVDGKFYRFLAGDISMDQ 510



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 12/206 (5%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           KK+   WN +I  Y H     EA+ +F  M       D  + +LVL AC+ LG + +G +
Sbjct: 210 KKNVITWNTMISGYLHAQLYAEAVDLFDEMKAGNHEADHLTVTLVLSACAHLGWLGKGTE 269

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H   +     S   +   LI +Y +CG ++ + ++F K  ++D   +N++I G    G 
Sbjct: 270 MHVYAQDHRLASSPHVATSLIDMYAKCGTIQRSLEVFYKSQVKDIYCWNAIISGLALHGY 329

Query: 201 IESARELFDSMPIRERNL----ISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
             +A +L D M  R+  +    I++  +L+  +  +S +Q   ++F+ M +   +     
Sbjct: 330 GHAAVKLLDKM--RDNGVRPDEITFIGLLSACSH-RSLVQEGCRLFDCMEKEFGLPPKLE 386

Query: 257 LHGCV-----KCGKMDDAQALFDKMP 277
            +GC+     + G +D A  L   MP
Sbjct: 387 HYGCMVDLLGRAGFLDPAFQLIKAMP 412


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 199/595 (33%), Positives = 304/595 (51%), Gaps = 44/595 (7%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF-FKYHAFREKKDPFLWNAI 90
           QIHA ++  G   +  L   L+ S+         +  R I   K       K+   W  +
Sbjct: 270 QIHAHILRYGLEMDASLMNVLIDSY--------VKCGRVIAAHKLFNGMPNKNIISWTTL 321

Query: 91  IKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAF 150
           +  Y      KEA+ +F  M   G+  D ++ S +L +C+ L  +  G Q+H    K   
Sbjct: 322 LSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANL 381

Query: 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN---IESAREL 207
           G+D ++ N LI +Y +C  L  AR++FD     D V +N+MI+GY + G    +  A  +
Sbjct: 382 GNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNI 441

Query: 208 FDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGK 265
           F  M  R    +L+++ S+L   A L S                 +  +  +HG      
Sbjct: 442 FRDMRFRLIRPSLLTFVSLLRASASLTS-----------------LGLSKQIHGL----- 479

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
                 +F      D+ + + +ID Y+    +  +R +FDEM  +D+V  N+M  GYV+ 
Sbjct: 480 ------MFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQ 533

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
             + +AL +F  +Q      PD+ +   +++A   L  +  G   H  L K     N   
Sbjct: 534 SENEEALNLFLELQLSRE-RPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYI 592

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
             AL+DMY+KCGS E+A K F+      V  WN++I+  A HG G+ A  +L +M    I
Sbjct: 593 TNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGI 652

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR 505
           EP+ ITF G+L+AC+HAGLV++GL  FELM R   +EPE +HY CMV +LGRAG +  AR
Sbjct: 653 EPNYITFVGVLSACSHAGLVEDGLKQFELMLRF-GIEPETEHYVCMVSLLGRAGRLNKAR 711

Query: 506 NLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565
            LIE MP +P  ++WR+LLS C    N+ + E  A+  I  D  +S S+ +LSN++A  G
Sbjct: 712 ELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKG 771

Query: 566 MWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           MW +A++VR  MK   + K PG SWI +   VH F  +DKS  +   IY +LD++
Sbjct: 772 MWTEAKKVRERMKVEGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQIYEVLDDL 826



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 136/532 (25%), Positives = 233/532 (43%), Gaps = 80/532 (15%)

Query: 31  NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAI 90
           N +H ++I  G   +T+L+  L+  +S +       +AR +F K      +++   W+ +
Sbjct: 64  NVVHGQIIVWGLELDTYLSNILINLYSRAGGMV---YARKVFEKM----PERNLVSWSTM 116

Query: 91  IKTYSHGLDPKEALVMFC-LMLDNGVSVDKFSASLVLKACSRLGLIEEG----LQIHGLL 145
           +   +H    +E+LV+F         S +++  S  ++ACS  GL   G     Q+   L
Sbjct: 117 VSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACS--GLDGRGRWMVFQLQSFL 174

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
            K  F  D+++   LI  Y++ G +++AR +FD +  + +V++ +MI G VK G    + 
Sbjct: 175 VKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSL 234

Query: 206 ELFDSMPIRERNLISWNSVLNGYAQ-------LKSGLQFAWQIFEKMPERDLISWNSMLH 258
           +LF    + E N++    +L+           L+ G Q    I     E D    N ++ 
Sbjct: 235 QLF--YQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLID 292

Query: 259 GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
             VKCG++  A  LF+ MP ++++SW  ++ GY +                         
Sbjct: 293 SYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQ------------------------- 327

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
                 N    +A+E+F +M  +  L PD  +   +L++ A L  +  G  +H Y  K  
Sbjct: 328 ------NALHKEAMELFTSMS-KFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKAN 380

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG-EL--AFD 435
              +     +LIDMY+KC  + +A KVF+      V  +NAMI G +  G   EL  A +
Sbjct: 381 LGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALN 440

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           +  +M    I P  +TF  LL A A        L    L ++IH L   +  YG  +DI 
Sbjct: 441 IFRDMRFRLIRPSLLTFVSLLRASA-------SLTSLGLSKQIHGL---MFKYGLNLDIF 490

Query: 496 GRAGHIEAARN--------LIEDMPMEPNDVIWRTLLSA----CRNYENLNV 535
             +  I+   N        L+ D     + VIW ++ +       N E LN+
Sbjct: 491 AGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNL 542


>gi|356528451|ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 579

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 182/547 (33%), Positives = 297/547 (54%), Gaps = 42/547 (7%)

Query: 118 DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLF 177
           D + A+L + A SR G ++   ++   +       D+   N ++S Y + G L+ ++ LF
Sbjct: 28  DVYHANLDIVALSRAGKVDAARKLFDEMAT----KDVVTWNSMLSAYWQNGLLQRSKALF 83

Query: 178 DKMGIRDSVS-------------------------------YNSMIDGYVKSGNIESARE 206
             M +R+ VS                               YN++I G  + G ++ A+ 
Sbjct: 84  HSMPLRNVVSWNSIIAACVQNDNLQDAFRYLAAAPEKNAASYNAIISGLARCGRMKDAQR 143

Query: 207 LFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKM 266
           LF++MP    N++S+ ++++GYA+++ G+  A  +FE MP R+ +SW  M++G V+ G  
Sbjct: 144 LFEAMPCP--NVVSYTAMVDGYARVEGGIGRARALFEAMPRRNSVSWVVMINGLVENGLC 201

Query: 267 DDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNG 326
           ++A  +F +MP+++ V+   MI G+ K GR++ AR LF E+  RD+V+ N +M GY +NG
Sbjct: 202 EEAWEVFVRMPQKNDVARTAMITGFCKEGRMEDARDLFQEIRCRDLVSWNIIMTGYAQNG 261

Query: 327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG 386
              +AL +F  M     + PDD + V V  A A L  +++G   H  L K  F  +    
Sbjct: 262 RGEEALNLFSQM-IRTGMQPDDLTFVSVFIACASLASLEEGSKAHALLIKHGFDSDLSVC 320

Query: 387 VALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE 446
            ALI ++SKCG I ++  VF QI    +  WN +I   A HGL + A     +M  +S++
Sbjct: 321 NALITVHSKCGGIVDSELVFGQISHPDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQ 380

Query: 447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARN 506
           PD ITF  LL+AC  AG V E +  F LM   + + P  +HY C+VD++ RAG ++ A  
Sbjct: 381 PDGITFLSLLSACCRAGKVNESMNLFSLMVDNYGIPPRSEHYACLVDVMSRAGQLQRACK 440

Query: 507 LIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGM 566
           +I +MP + +  IW  +L+AC  + N+ +GE  A+ ++ +D  NS +YV+LSN++A  G 
Sbjct: 441 IINEMPFKADSSIWGAVLAACSVHLNVELGELAARRILNLDPFNSGAYVMLSNIYAAAGK 500

Query: 567 WNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD----NMWT 622
           W D  R+R +MKE+ +KK    SW+++    H F   D S   + DI+  L     +M  
Sbjct: 501 WKDVHRIRVLMKEQGVKKQTAYSWLQIGNKTHYFVGGDPSHPNINDIHVALRRITLHMKV 560

Query: 623 PDSVATS 629
            D VA+S
Sbjct: 561 KDFVASS 567



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 181/345 (52%), Gaps = 15/345 (4%)

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIF 242
           RD    N  I    ++G +++AR+LFD M  ++  +++WNS+L+ Y Q    LQ +  +F
Sbjct: 27  RDVYHANLDIVALSRAGKVDAARKLFDEMATKD--VVTWNSMLSAYWQ-NGLLQRSKALF 83

Query: 243 EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
             MP R+++SWNS++  CV+   + DA       P+++  S+  +I G A+ GR+  A+R
Sbjct: 84  HSMPLRNVVSWNSIIAACVQNDNLQDAFRYLAAAPEKNAASYNAIISGLARCGRMKDAQR 143

Query: 303 LFDEMPKRDVVACNAMMGGYVR-NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
           LF+ MP  +VV+  AM+ GY R  G   +A  +F+ M        +  S V++++ + + 
Sbjct: 144 LFEAMPCPNVVSYTAMVDGYARVEGGIGRARALFEAMP-----RRNSVSWVVMINGLVEN 198

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
           G  ++   +   + +     N     A+I  + K G +E+A  +F++I    +  WN ++
Sbjct: 199 GLCEEAWEVFVRMPQK----NDVARTAMITGFCKEGRMEDARDLFQEIRCRDLVSWNIIM 254

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
            G A +G GE A +L  +M R  ++PDD+TF  +  ACA    ++EG     L+ + H  
Sbjct: 255 TGYAQNGRGEEALNLFSQMIRTGMQPDDLTFVSVFIACASLASLEEGSKAHALLIK-HGF 313

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           + +L     ++ +  + G I  +  L+      P+ V W T+++A
Sbjct: 314 DSDLSVCNALITVHSKCGGIVDSE-LVFGQISHPDLVSWNTIIAA 357



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 37/233 (15%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D   WN I+  Y+     +EAL +F  M+  G+  D  +   V  AC+ L  +EEG + 
Sbjct: 245 RDLVSWNIIMTGYAQNGRGEEALNLFSQMIRTGMQPDDLTFVSVFIACASLASLEEGSKA 304

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H LL K  F SDL + N LI+++ +CG +  +  +F ++   D VS+N++I  + + G  
Sbjct: 305 HALLIKHGFDSDLSVCNALITVHSKCGGIVDSELVFGQISHPDLVSWNTIIAAFAQHGLY 364

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
           + AR  FD                              Q+     + D I++ S+L  C 
Sbjct: 365 DKARSYFD------------------------------QMVTVSVQPDGITFLSLLSACC 394

Query: 262 KCGKMDDAQALFDKM------PKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           + GK++++  LF  M      P R    +A ++D  ++ G++  A ++ +EMP
Sbjct: 395 RAGKVNESMNLFSLMVDNYGIPPRS-EHYACLVDVMSRAGQLQRACKIINEMP 446


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 163/405 (40%), Positives = 243/405 (60%), Gaps = 2/405 (0%)

Query: 217 NLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK 275
           +L    +++  YA+  +G +  A   F++ P RD+   N ML   V  G++ +A+ +FD 
Sbjct: 82  DLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLAAYVARGEVAEARKVFDG 141

Query: 276 MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
           M  RD+VSW  MI GYA  G V +AR +FD    RD  + ++M+  Y +   S +ALE++
Sbjct: 142 MSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELW 201

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
             M+    + PD  S+V VLSA + +G +  G  +HR++E ++  ++ K G AL+DMY+K
Sbjct: 202 REMRVA-GVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAK 260

Query: 396 CGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGL 455
           CG IEN++KVF  +    V  W++MI GLA HGLG  A  L  EM    ++P++ITF G+
Sbjct: 261 CGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGV 320

Query: 456 LNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEP 515
           L AC H GLV +G   F  M  +H + P ++HYGCMVD+LGRAGH+E A  LI  M  +P
Sbjct: 321 LIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKP 380

Query: 516 NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRS 575
           + +IWRTLL ACR ++N+ + E     L  +D      YVLLSN++A    W     +R 
Sbjct: 381 DPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHYVLLSNIYAQANSWEGVAEMRK 440

Query: 576 MMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            ++  N++++PG S IE E  VHEF   D+S  ++ +IY ML+ M
Sbjct: 441 TIRRENIQRVPGRSSIEWENTVHEFVSGDRSHPRIEEIYKMLEEM 485



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 168/358 (46%), Gaps = 47/358 (13%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           D+FL N +++ YV  G +  AR++FD M  RD VS+N+MI GY   G++  ARE+FD   
Sbjct: 115 DVFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDG-- 172

Query: 213 IRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDA 269
            R+R+  SW+S+++ YA+    K  L+   ++       D IS  S+L  C   G +   
Sbjct: 173 TRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIG 232

Query: 270 QALF----DKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
             +         + D+     ++D YAK G ++ + ++F  MP +DV+  ++M+ G   +
Sbjct: 233 AEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANH 292

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
           G    AL +F  M  +  L P++ + + VL A   +G ++ G    +Y      S++  H
Sbjct: 293 GLGHDALSLFSEMISQ-GLQPNEITFIGVLIACTHVGLVNDG---KKYFS----SMSDVH 344

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
           GV                          ++H+  M++ L   G  E A +L+  M   + 
Sbjct: 345 GVV-----------------------PRMEHYGCMVDLLGRAGHVEEAMELIRSM---TF 378

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ-HYGCMVDILGRAGHIE 502
           +PD I +  LL AC    + K   +  E M ++  L+P    HY  + +I  +A   E
Sbjct: 379 KPDPIIWRTLLGACR---IHKNVEIAEEAMAKLKVLDPLADGHYVLLSNIYAQANSWE 433



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 107/248 (43%), Gaps = 40/248 (16%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D F W+++I  Y+ G   KEAL ++  M   GV+ D  S   VL ACS +G +  G ++
Sbjct: 176 RDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEV 235

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H  +       D+ L   L+ +Y +CG +E + ++F  M ++D ++++SMI G    G  
Sbjct: 236 HRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLG 295

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
             A  LF  M                   +  GLQ         P    I++  +L  C 
Sbjct: 296 HDALSLFSEM-------------------ISQGLQ---------PNE--ITFIGVLIACT 325

Query: 262 KCGKMDDAQALFDKM-------PKRDVVSWANMIDGYAKLGRVDIARRLFDEMP-KRDVV 313
             G ++D +  F  M       P+ +   +  M+D   + G V+ A  L   M  K D +
Sbjct: 326 HVGLVNDGKKYFSSMSDVHGVVPRME--HYGCMVDLLGRAGHVEEAMELIRSMTFKPDPI 383

Query: 314 ACNAMMGG 321
               ++G 
Sbjct: 384 IWRTLLGA 391


>gi|242045336|ref|XP_002460539.1| hypothetical protein SORBIDRAFT_02g030160 [Sorghum bicolor]
 gi|241923916|gb|EER97060.1| hypothetical protein SORBIDRAFT_02g030160 [Sorghum bicolor]
          Length = 630

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 190/563 (33%), Positives = 290/563 (51%), Gaps = 50/563 (8%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   WNA++  Y+    P++AL +F        + D FS +  L A + L     G Q
Sbjct: 39  RRDAVAWNAMLTAYARAGQPRDALALF----SRAPAPDAFSLTAALSAAAALRSPTAGAQ 94

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  L +V   + L + N LIS+Y +C   E A + F +M  R+++S+ S++D YV S +
Sbjct: 95  LHARLLRVGLRALLPVGNSLISMYAKCARAEDAARAFGEMRERNALSWCSLLDAYVASDD 154

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI--------- 251
           +  A+ELFD MP   RN ++WN++L GY++          +F KM    L          
Sbjct: 155 LRLAQELFDEMP--NRNNVAWNTLLMGYSR-SGNANHCLLLFNKMRMAGLTCDDATLCIL 211

Query: 252 -----------------------SWNSMLHGC-------VKCGKMDDAQALFDKMPKRDV 281
                                   WN+M            K   +DDA  +F+ M  + +
Sbjct: 212 VDACTELANPSAGSAIHKIVVQSGWNAMAEVSNSLISLYTKFSLLDDAVRIFESMEVQTI 271

Query: 282 VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
           VSW ++ID Y KLG V+ A  LF  +P+ +V++  AM+GG  RNG + +AL +F  M   
Sbjct: 272 VSWNSLIDAYMKLGCVEKATSLFGSVPETNVISWTAMIGGLARNGLADEALILFVEMLAH 331

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIEN 401
            ++HPDD +   VL A A    +  G  +H  + +  F        +LIDMY+KCG +E 
Sbjct: 332 EHIHPDDFTFGAVLHACATAASLASGRMVHCRVFQSGFVSYLYVANSLIDMYAKCGDLEG 391

Query: 402 AIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461
              VF  I +  +  WN M+ G AI+GL   A  +   M+   + PD++TFTGLL AC+H
Sbjct: 392 GTNVFSTIVNKDLVSWNTMLFGFAINGLPNEALVVYDSMKSHDVCPDEVTFTGLLTACSH 451

Query: 462 AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE---DMPMEPNDV 518
           +GL++ G   FELM  +H ++P+ +H  C++D+  R+G+I  A  +++   +M    N  
Sbjct: 452 SGLLEHGKTFFELMVSVHGIQPKPEHLSCILDMYARSGNITKAMEMLDRYSEMIQTHNSD 511

Query: 519 IWRTLLSACR-NYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
           I   LLSAC   + N +V     K ++   S+    YV+LSN+F   G WN A RVR  M
Sbjct: 512 IREALLSACSLEHLNFSVARKAVKDMVATKSAGDVGYVMLSNLFCATGQWNQAERVRIAM 571

Query: 578 KERNLKKLPGCSWIELEGVVHEF 600
            E  +KK PGCSWIE++G V  F
Sbjct: 572 AEYGIKKSPGCSWIEVQGAVKVF 594



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 187/398 (46%), Gaps = 48/398 (12%)

Query: 166 RCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRER-NLISWNSV 224
           R G    AR +FD M  RD+V++N+M+  Y ++G    A  LF   P  +  +L +  S 
Sbjct: 23  RAGDAASARAVFDAMPRRDAVAWNAMLTAYARAGQPRDALALFSRAPAPDAFSLTAALSA 82

Query: 225 LNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSW 284
                   +G Q   ++        L   NS++    KC + +DA   F +M +R+ +SW
Sbjct: 83  AAALRSPTAGAQLHARLLRVGLRALLPVGNSLISMYAKCARAEDAARAFGEMRERNALSW 142

Query: 285 ANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYL 344
            +++D Y     + +A+ LFDEMP R+ VA N ++ GY R+G +   L +F+ M+    L
Sbjct: 143 CSLLDAYVASDDLRLAQELFDEMPNRNNVAWNTLLMGYSRSGNANHCLLLFNKMRMA-GL 201

Query: 345 HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIK 404
             DDA+L I++ A  +L +   G AIH+ + +  ++   +   +LI +Y+K   +++A++
Sbjct: 202 TCDDATLCILVDACTELANPSAGSAIHKIVVQSGWNAMAEVSNSLISLYTKFSLLDDAVR 261

Query: 405 VFEQIEDGSVDHWN-------------------------------AMINGLAIHGLGELA 433
           +FE +E  ++  WN                               AMI GLA +GL + A
Sbjct: 262 IFESMEVQTIVSWNSLIDAYMKLGCVEKATSLFGSVPETNVISWTAMIGGLARNGLADEA 321

Query: 434 FDLLMEM-ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH------KLEPELQ 486
             L +EM     I PDD TF  +L+ACA A  +  G       R +H           L 
Sbjct: 322 LILFVEMLAHEHIHPDDFTFGAVLHACATAASLASG-------RMVHCRVFQSGFVSYLY 374

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
               ++D+  + G +E   N+   + +  + V W T+L
Sbjct: 375 VANSLIDMYAKCGDLEGGTNVFSTI-VNKDLVSWNTML 411



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 88/200 (44%), Gaps = 9/200 (4%)

Query: 277 PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFD 336
           P   +V+  + I    + G    AR +FD MP+RD VA NAM+  Y R G    AL +F 
Sbjct: 7   PFAGLVAATSRIASLGRAGDAASARAVFDAMPRRDAVAWNAMLTAYARAGQPRDALALFS 66

Query: 337 NMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC 396
                    PD  SL   LSA A L     G  +H  L +         G +LI MY+KC
Sbjct: 67  RAPA-----PDAFSLTAALSAAAALRSPTAGAQLHARLLRVGLRALLPVGNSLISMYAKC 121

Query: 397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLL 456
              E+A + F ++ + +   W ++++         LA +L  EM       +++ +  LL
Sbjct: 122 ARAEDAARAFGEMRERNALSWCSLLDAYVASDDLRLAQELFDEMP----NRNNVAWNTLL 177

Query: 457 NACAHAGLVKEGLLCFELMR 476
              + +G     LL F  MR
Sbjct: 178 MGYSRSGNANHCLLLFNKMR 197



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 23/170 (13%)

Query: 20  LLRKCKT---LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L  C T   L     +H R+  +GF+   ++   L+  ++   C  L E    +F    
Sbjct: 344 VLHACATAASLASGRMVHCRVFQSGFVSYLYVANSLIDMYAK--CGDL-EGGTNVFSTI- 399

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
                KD   WN ++  ++    P EALV++  M  + V  D+ + + +L ACS  GL+E
Sbjct: 400 ---VNKDLVSWNTMLFGFAINGLPNEALVVYDSMKSHDVCPDEVTFTGLLTACSHSGLLE 456

Query: 137 EG-------LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK 179
            G       + +HG+  K    S      C++ +Y R G +  A ++ D+
Sbjct: 457 HGKTFFELMVSVHGIQPKPEHLS------CILDMYARSGNITKAMEMLDR 500


>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
 gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
          Length = 377

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 151/362 (41%), Positives = 241/362 (66%), Gaps = 4/362 (1%)

Query: 262 KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
           KCG +  A+ +FD+MP ++V+ W +M+ GY   G +D AR LF+  P +DVV   AM+ G
Sbjct: 4   KCGCLSVARKIFDEMPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAMING 63

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
           YV+  +  +A+ +F  MQ +  + PD   LV +L+  AQ+G +++G  IH Y+++    +
Sbjct: 64  YVQFNHFDEAVALFQEMQIQ-RVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGIPV 122

Query: 382 NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEME 441
           +   G +LI+MYSKCG IE A+++F  + +     W ++I GLA++G    A +L  +M+
Sbjct: 123 DAVVGTSLIEMYSKCGCIEKALRIFCGLREKDTATWTSIICGLAMNGKTSKALELFSKMK 182

Query: 442 RLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHI 501
           ++   PD++TF G+L+AC+H GLV+EG   F  M  I+ +EP+L+HYGC++D+LGRAG +
Sbjct: 183 QVEAIPDEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKLEHYGCLIDLLGRAGQL 242

Query: 502 EAARNLIEDMPMEPNDVI---WRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           + A  LI+ +    N++I   + +LLSACR Y+N+ +GE VA+ L+ ++S +SS + LL+
Sbjct: 243 DEAEELIKKIVNANNEIIVPLYGSLLSACRIYKNVQMGERVAEQLVKIESRDSSVHTLLA 302

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           N++A  G W D  RVR  MK+  +KK+PGCS IE++G+VHEF V + S  ++R+IY MLD
Sbjct: 303 NIYASAGRWVDVNRVRREMKDLGVKKVPGCSSIEVDGIVHEFLVGNPSCSEMREIYSMLD 362

Query: 619 NM 620
            M
Sbjct: 363 RM 364



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 166/318 (52%), Gaps = 26/318 (8%)

Query: 163 LYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWN 222
           +Y +CG L  AR++FD+M  ++ + + SM+ GYV  G ++ ARELF+  P+  ++++ W 
Sbjct: 1   MYCKCGCLSVARKIFDEMPHKNVICWTSMVSGYVNYGELDKARELFERSPV--KDVVLWT 58

Query: 223 SVLNGYAQLKSGLQFAWQIFEKMP----ERDLISWNSMLHGCVKCGKMDDAQALFDKMPK 278
           +++NGY Q       A  +F++M     + D     ++L GC + G ++    +   + +
Sbjct: 59  AMINGYVQFNH-FDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDE 117

Query: 279 R----DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEI 334
           +    D V   ++I+ Y+K G ++ A R+F  + ++D     +++ G   NG + KALE+
Sbjct: 118 KGIPVDAVVGTSLIEMYSKCGCIEKALRIFCGLREKDTATWTSIICGLAMNGKTSKALEL 177

Query: 335 FDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK--HGVALIDM 392
           F  M+ ++   PD+ + + VLSA +  G +++G      +    +++  K  H   LID+
Sbjct: 178 FSKMK-QVEAIPDEVTFIGVLSACSHGGLVEEGREFFNSM-TSIYNIEPKLEHYGCLIDL 235

Query: 393 YSKCGSIENAIKVFEQIEDGS----VDHWNAMINGLAIHG---LGELAFDLLMEMERLSI 445
             + G ++ A ++ ++I + +    V  + ++++   I+    +GE   + L+++E    
Sbjct: 236 LGRAGQLDEAEELIKKIVNANNEIIVPLYGSLLSACRIYKNVQMGERVAEQLVKIE---- 291

Query: 446 EPDDITFTGLLNACAHAG 463
             D    T L N  A AG
Sbjct: 292 SRDSSVHTLLANIYASAG 309



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 14/205 (6%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           KD  LW A+I  Y       EA+ +F  M    V  DKF    +L  C+++G +E+G  I
Sbjct: 52  KDVVLWTAMINGYVQFNHFDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQGTWI 111

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           HG + +     D  +   LI +Y +CG +E A ++F  +  +D+ ++ S+I G   +G  
Sbjct: 112 HGYIDEKGIPVDAVVGTSLIEMYSKCGCIEKALRIFCGLREKDTATWTSIICGLAMNGKT 171

Query: 202 ESARELFDSMPIRER--NLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSM 256
             A ELF  M   E   + +++  VL+  +    ++ G +F    F  M     I     
Sbjct: 172 SKALELFSKMKQVEAIPDEVTFIGVLSACSHGGLVEEGREF----FNSMTSIYNIEPKLE 227

Query: 257 LHGCV-----KCGKMDDAQALFDKM 276
            +GC+     + G++D+A+ L  K+
Sbjct: 228 HYGCLIDLLGRAGQLDEAEELIKKI 252



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 68/165 (41%), Gaps = 11/165 (6%)

Query: 20  LLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           LL  C  +  + Q   IH  +   G   +  + T L+  +S   C    E A  IF    
Sbjct: 95  LLTGCAQMGALEQGTWIHGYIDEKGIPVDAVVGTSLIEMYSKCGCI---EKALRIFC--- 148

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
             REK D   W +II   +      +AL +F  M       D+ +   VL ACS  GL+E
Sbjct: 149 GLREK-DTATWTSIICGLAMNGKTSKALELFSKMKQVEAIPDEVTFIGVLSACSHGGLVE 207

Query: 137 EGLQIHGLLRKV-AFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
           EG +    +  +      L    CLI L  R G L+ A +L  K+
Sbjct: 208 EGREFFNSMTSIYNIEPKLEHYGCLIDLLGRAGQLDEAEELIKKI 252


>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
          Length = 1974

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 200/647 (30%), Positives = 337/647 (52%), Gaps = 59/647 (9%)

Query: 20   LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
            +L+ C +L  +     +H  ++  GF     +++ LV  +    C  L E AR +F    
Sbjct: 1283 VLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGK--CGVL-EDARKVFDS-- 1337

Query: 77   AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
                +K+   WN++I  Y      +EA+ +F  M   G+   + + +  L A + L  + 
Sbjct: 1338 --MVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALI 1395

Query: 137  EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            EG Q H +    +   D  L + +I+ Y + G +E A  +F +M  +D V++N +I  YV
Sbjct: 1396 EGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYV 1455

Query: 197  KSGNIESAREL----------FDSMPIR---------------------------ERNLI 219
            +   +  A  +          FDS+ +                            E +++
Sbjct: 1456 QHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVV 1515

Query: 220  SWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDA-----QALFD 274
              NS+++ YA+ +  +  A ++F+   ERDL+ WN++L    + G   +A     Q  FD
Sbjct: 1516 VANSIIDMYAKCER-IDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFD 1574

Query: 275  KMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP----KRDVVACNAMMGGYVRNGYSMK 330
             +P  +V+SW ++I G+ + G+V+ A+ +F +M     + +++    ++ G  ++G+  +
Sbjct: 1575 SVPP-NVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYE 1633

Query: 331  ALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI 390
            A+  F  MQ E  + P  AS+  VL A   +  +  G AIH ++ + +F L+     +L+
Sbjct: 1634 AILFFQKMQ-EAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLV 1692

Query: 391  DMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
            DMY+KCGSI+ A KVF  +    +  +NAMI+  A+HG    A  L   +++  IEPD I
Sbjct: 1693 DMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSI 1752

Query: 451  TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIED 510
            TFT +L+AC+HAGLV EGL  F  M   H + P ++HYGC+V +L R G+++ A  LI  
Sbjct: 1753 TFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILT 1812

Query: 511  MPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDA 570
            MP +P+  I  +LL+ACR +  + +GE ++KHL  ++ SNS +YV LSN +A  G W + 
Sbjct: 1813 MPFQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEV 1872

Query: 571  RRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
              +R +MK R L+K PGCSWI+  G ++ F   D S  +  +IY ML
Sbjct: 1873 SNMRDLMKVRGLRKNPGCSWIQTGGKLNVFVAGDGSHPKTEEIYAML 1919



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 164/586 (27%), Positives = 278/586 (47%), Gaps = 72/586 (12%)

Query: 20   LLRKC---KTLNDVNQIHARMITTG--FIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
            LL+ C   + L+   QIHAR++  G  F KN ++ TKLV  ++        +F       
Sbjct: 1180 LLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAK------CDFPEVAVRL 1233

Query: 75   YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
            +H  R  ++ F W AI+         ++AL+ F  M +NGV  D F    VLKAC  L L
Sbjct: 1234 FHRLR-VRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQL 1292

Query: 135  IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
            I  G  +HG + K+ FG+ +F+ + L+ +Y +CG LE AR++FD M  ++ V++NSMI G
Sbjct: 1293 IGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVG 1352

Query: 195  YVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQ----FAWQIFEKMPER 248
            YV++G  + A ++F  M +   E   ++  S L+  A L + ++     A  I   + + 
Sbjct: 1353 YVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSL-DL 1411

Query: 249  DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
            D I  +S+++   K G ++DA+ +F +M ++DVV+W                        
Sbjct: 1412 DNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTW------------------------ 1447

Query: 309  KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG- 367
                   N ++  YV++    KAL +   M+ E  L  D  +L  +LSA A   +I  G 
Sbjct: 1448 -------NLLISSYVQHHQVGKALNMCHLMRSE-NLRFDSVTLSSILSASAVTSNIKLGK 1499

Query: 368  ----VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
                  I R LE D    N     ++IDMY+KC  I++A KVF+   +  +  WN ++  
Sbjct: 1500 EGHCYCIRRNLESDVVVAN-----SIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAA 1554

Query: 424  LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
             A  GL   A  L  +M+  S+ P+ I++  ++      G V E    F  M+ +   +P
Sbjct: 1555 YAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSL-GFQP 1613

Query: 484  ELQHYGCMVDILGRAGHIEAARNLIEDMP---MEPNDVIWRTLLSACRNYENLNVGEP-- 538
             L  +  ++  L ++G    A    + M    + P+     ++L AC +  +L  G    
Sbjct: 1614 NLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIH 1673

Query: 539  --VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
              + +H   +    ++S V   +M+A  G  ++A++V  MM  + L
Sbjct: 1674 GFITRHEFCLSVPVATSLV---DMYAKCGSIDEAKKVFHMMSSKEL 1716


>gi|359480813|ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Vitis vinifera]
          Length = 634

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 203/619 (32%), Positives = 314/619 (50%), Gaps = 59/619 (9%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           L L    K L+   Q+H  +I  G   +  + TKLV  ++   C  L   A+ +F K   
Sbjct: 30  LQLCSNSKALHQGKQLHQHIILCGLDHHPFMLTKLVQMYAD--CGDLGS-AQALFDKL-- 84

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
              + + F W AI+  YS      E +  +  M   GV  DK+    V +AC +L  +E 
Sbjct: 85  --SQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQLLWLEV 142

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G+Q+H  +       DL + N LI +Y + G +   R++FD+M  RD +S+NSMI GYV 
Sbjct: 143 GIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMISGYVC 202

Query: 198 SGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLISWN 254
           +G +E + EL  SM IR  E ++++WN+V++ Y ++  GL   AW+IFE++ E ++IS  
Sbjct: 203 NGFLEFSVELLASMRIRGFEPDMVTWNTVMDAYCRM--GLCDEAWEIFEQIKEPNIISLT 260

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKRDVV-------------------------------- 282
           +++ G  + G  + +  +F +M  R V                                 
Sbjct: 261 TLVSGYSRIGNHEKSLGIFREMMSRRVAFPDLDSLSSVLVSCRHLGALVCGQEIHGYGIR 320

Query: 283 ----------SWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
                     + A ++  Y K  R+  A  +F+ M + DVV  NAM+ G+V       AL
Sbjct: 321 SVDSSSFYKSAGAALLTMYVKCKRIQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLAL 380

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDM 392
           E F  MQ    ++       I +S +     +  G  +H Y+ K+ FS       ALI M
Sbjct: 381 ECFSKMQRSGIMNNQ-----ITISTVLPACDLKSGKQVHAYITKNSFSSVIPVWNALIHM 435

Query: 393 YSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITF 452
           YSKCG I  A  +F  +    +  WN MI G  +HGLG+ A  LL +M    + P+ +TF
Sbjct: 436 YSKCGCIGTAYSIFSNMISRDLVSWNTMIGGFGMHGLGQFALQLLRDMSHSDVCPNSVTF 495

Query: 453 TGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP 512
           T  L+AC+H+GLV EG+  F  M R     P ++H+ C+VD+L RA  +E A   IE MP
Sbjct: 496 TSALSACSHSGLVDEGMELFHTMTRDFGFTPGMEHFSCVVDLLARADRLEDAVGFIEKMP 555

Query: 513 MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARR 572
           ++P+  IW  LL+ACR  +N++V +  A+ L  ++  ++ +YV LSN++A  G W+DA  
Sbjct: 556 LKPSKHIWSALLAACRAQQNVSVAKLAAEQLFQLEPEHAGNYVTLSNIYARAGRWDDAVA 615

Query: 573 VRSMMKERNLKKLPGCSWI 591
           VR +M++R L K  G SWI
Sbjct: 616 VRKLMEDRGLVKPSGYSWI 634



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 122/484 (25%), Positives = 201/484 (41%), Gaps = 71/484 (14%)

Query: 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQL 176
           +  F  + +L+ CS    + +G Q+H  +         F+   L+ +Y  CG L  A+ L
Sbjct: 21  LSSFQLNHLLQLCSNSKALHQGKQLHQHIILCGLDHHPFMLTKLVQMYADCGDLGSAQAL 80

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQL--- 231
           FDK+   +  ++ +++  Y ++G  +     +  M ++    +   +  V     QL   
Sbjct: 81  FDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQLLWL 140

Query: 232 KSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMI--- 288
           + G+Q    +     E DL   NS++    K G +   + +FD+M +RDV+SW +MI   
Sbjct: 141 EVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMISGY 200

Query: 289 --------------------------------DGYAKLGRVDIARRLFDEMPKRDVVACN 316
                                           D Y ++G  D A  +F+++ + ++++  
Sbjct: 201 VCNGFLEFSVELLASMRIRGFEPDMVTWNTVMDAYCRMGLCDEAWEIFEQIKEPNIISLT 260

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY--L 374
            ++ GY R G   K+L IF  M       PD  SL  VL +   LG +  G  IH Y   
Sbjct: 261 TLVSGYSRIGNHEKSLGIFREMMSRRVAFPDLDSLSSVLVSCRHLGALVCGQEIHGYGIR 320

Query: 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
             D  S     G AL+ MY KC  I++A+ VFE ++   V  WNAMI G     +G LA 
Sbjct: 321 SVDSSSFYKSAGAALLTMYVKCKRIQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLAL 380

Query: 435 DLLMEMERLSIEPDDITFTGLLNAC-------AHAGLVKEGLL----------------- 470
           +   +M+R  I  + IT + +L AC        HA + K                     
Sbjct: 381 ECFSKMQRSGIMNNQITISTVLPACDLKSGKQVHAYITKNSFSSVIPVWNALIHMYSKCG 440

Query: 471 CFELMRRI--HKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPME---PNDVIWRTLLS 525
           C      I  + +  +L  +  M+   G  G  + A  L+ DM      PN V + + LS
Sbjct: 441 CIGTAYSIFSNMISRDLVSWNTMIGGFGMHGLGQFALQLLRDMSHSDVCPNSVTFTSALS 500

Query: 526 ACRN 529
           AC +
Sbjct: 501 ACSH 504


>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
           sativa Japonica Group]
 gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 702

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 184/611 (30%), Positives = 309/611 (50%), Gaps = 73/611 (11%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +K+   W +++  Y+    P+ AL MF  M+++GV+ + F+ +  L AC+ LG +  G Q
Sbjct: 76  RKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQ 135

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H L  +  F  D ++ +CLI +Y RCG L  A+++FD+M   D V Y S+I  + ++G 
Sbjct: 136 VHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGE 195

Query: 201 IESARE-----------------------------------LFDSMPIRERNLISWNSVL 225
            E A E                                   L   + +R +++ S  +++
Sbjct: 196 FELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTALI 255

Query: 226 NGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM------P-- 277
           + Y++     + A  +F+ +  ++++SW SM+   ++ G++++A  +F  M      P  
Sbjct: 256 DFYSR-NGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNE 314

Query: 278 ------------------------KRDVVS----WANMIDGYAKLGRVDIARRLFDEMPK 309
                                   K D+++       ++  Y + G V+    + +++  
Sbjct: 315 FALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIEN 374

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
            D+V+    +    +NG+  KA+ +   M  E +  P+  +   VLS+ A +  +D+G+ 
Sbjct: 375 PDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFT-PNGYAFSSVLSSCADVASLDQGMQ 433

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
            H    K         G ALI+MYSKCG + +A   F+ +    V  WN++I+G A HG 
Sbjct: 434 FHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGD 493

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
              A ++  +M    I+PDD TF G+L  C H+G+V+EG L F LM   +   P   HY 
Sbjct: 494 ANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYA 553

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549
           CM+D+LGR G  + A  +I DMP EP+ +IW+TLL++C+ + NL++G+  A  L+ +   
Sbjct: 554 CMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDR 613

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQ 609
           +S+SYVL+SN++A  G W DAR+VR  M E  +KK  GCSWIE+   VH F  RD S   
Sbjct: 614 DSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINNEVHTFASRDMSHPN 673

Query: 610 VRDIYYMLDNM 620
              IY ML  +
Sbjct: 674 SDSIYQMLGEL 684



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 111/425 (26%), Positives = 195/425 (45%), Gaps = 60/425 (14%)

Query: 31  NQIHARMITTGFIKNTHL--TTKLVASFSSSPCTPLTEF--ARYIFFKYHAFREKKDPFL 86
            QIH  +I    +++  +  +T L+  +S +      EF  A+ +F   H     K+   
Sbjct: 231 QQIHGYLIKKIGLRSQSVYSSTALIDFYSRN-----GEFKLAKAVFDSLHC----KNVVS 281

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           W ++++ Y      +EAL +F  M+  GV  ++F+ S+VL AC  +GL   G Q+H    
Sbjct: 282 WCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGL---GRQLHCSAI 338

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           K    +D+ + N L+S+Y R G +E    + +K+   D VS+ + I    ++G  E A  
Sbjct: 339 KHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIA 398

Query: 207 LFDSMPIR--ERNLISWNSVLNGYAQLKS---GLQFAWQIFEKMPERDLISWNSMLHGCV 261
           L   M       N  +++SVL+  A + S   G+QF     +   + ++ + N++++   
Sbjct: 399 LLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYS 458

Query: 262 KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
           KCG+M  A+  FD M   DV SW ++I G+A+ G  +                       
Sbjct: 459 KCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDAN----------------------- 495

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
                   KALE+F  M+    + PDD++ + VL      G +++G    R L  DQ+S 
Sbjct: 496 --------KALEVFSKMRSN-GIKPDDSTFLGVLMGCNHSGMVEEGELFFR-LMIDQYSF 545

Query: 382 N--GKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIH---GLGELAFD 435
                H   +IDM  + G  + A+++   +  +     W  ++    +H    +G+LA D
Sbjct: 546 TPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAAD 605

Query: 436 LLMEM 440
            LME+
Sbjct: 606 RLMEL 610



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 128/246 (52%), Gaps = 7/246 (2%)

Query: 280 DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQ 339
           DVV     ++   K GR+  A  LFD MP+++VVA  ++M GY RNG    AL +F +M 
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADM- 105

Query: 340 CELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSI 399
            E  + P+D +    L A A LG +  G  +H    +  F+ +   G  LI+MYS+CGS+
Sbjct: 106 VESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSL 165

Query: 400 ENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
             A +VF++++   V  + ++I+    +G  ELA + L++M +  ++P++ T T +L AC
Sbjct: 166 PAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC 225

Query: 460 AHA-GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
               G    G     L+++I      +     ++D   R G  + A+ + + +  + N V
Sbjct: 226 PRVLGQQIHGY----LIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCK-NVV 280

Query: 519 IWRTLL 524
            W +++
Sbjct: 281 SWCSMM 286



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 102/413 (24%), Positives = 181/413 (43%), Gaps = 63/413 (15%)

Query: 149 AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELF 208
           A   D+ L+   ++  V+ G L  A  LFD+M  ++ V++ S++ GY ++G  E+A  +F
Sbjct: 43  AESPDVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMF 102

Query: 209 DSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV----- 261
             M       N  + N+ L   A L  G   A +    +  R   + ++ +  C+     
Sbjct: 103 ADMVESGVAPNDFACNAALVACADL--GALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYS 160

Query: 262 KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
           +CG +  A+ +FD+M   DVV + ++I  + + G  ++A     +M K+           
Sbjct: 161 RCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQG---------- 210

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
                                 L P++ ++  +L+A  ++     G  IH YL K +  L
Sbjct: 211 ----------------------LKPNEHTMTTILTACPRV----LGQQIHGYLIK-KIGL 243

Query: 382 NGK---HGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
             +      ALID YS+ G  + A  VF+ +   +V  W +M+      G  E A  +  
Sbjct: 244 RSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFG 303

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
           +M    ++P++   + +L AC   GL ++ L C  +    H L  +++    ++ + GR 
Sbjct: 304 DMISEGVDPNEFALSIVLGACGSIGLGRQ-LHCSAIK---HDLITDIRVSNALLSMYGRT 359

Query: 499 G---HIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
           G    +EA  N IE+    P+ V W T +SA  N++N   GE     L  M S
Sbjct: 360 GLVEELEAMLNKIEN----PDLVSWTTAISA--NFQN-GFGEKAIALLCQMHS 405



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 128/296 (43%), Gaps = 44/296 (14%)

Query: 19  LLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAF 78
           ++L  C ++    Q+H   I    I +  ++  L++ +     T L E    +  K    
Sbjct: 319 IVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGR---TGLVEELEAMLNKI--- 372

Query: 79  REKKDPFLWN-AIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
            E  D   W  AI   + +G   K A+ + C M   G + + ++ S VL +C+ +  +++
Sbjct: 373 -ENPDLVSWTTAISANFQNGFGEK-AIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQ 430

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G+Q H L  K+   S++   N LI++Y +CG +  AR  FD M   D  S+NS+I G+ +
Sbjct: 431 GMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQ 490

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
            G+   A E+F  M  R   +   +S   G                            +L
Sbjct: 491 HGDANKALEVFSKM--RSNGIKPDDSTFLG----------------------------VL 520

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVVS-----WANMIDGYAKLGRVDIARRLFDEMP 308
            GC   G +++ +  F  M  +   +     +A MID   + GR D A R+ ++MP
Sbjct: 521 MGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMP 576



 Score = 43.9 bits (102), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 98/255 (38%), Gaps = 59/255 (23%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           WN++I  ++   D  +AL +F  M  NG+  D  +   VL  C+  G++EEG        
Sbjct: 481 WNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEG-------- 532

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS-YNSMIDGYVKSGNIESAR 205
                 +LF                  R + D+     + S Y  MID   ++G  + A 
Sbjct: 533 ------ELFF-----------------RLMIDQYSFTPAPSHYACMIDMLGRNGRFDEAL 569

Query: 206 ELFDSMPIRERNLISWNSVLNG---YAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVK 262
            + + MP     LI W ++L     +  L  G   A ++ E + +RD  S+  M +    
Sbjct: 570 RMINDMPFEPDALI-WKTLLASCKLHRNLDIGKLAADRLME-LSDRDSASYVLMSNIYAM 627

Query: 263 CGKMDDAQALFDKMPKRDV-----VSW-----------------ANMIDGYAKLGRVDIA 300
            G+ +DA+ +  +M +  V      SW                  N    Y  LG +   
Sbjct: 628 HGEWEDARKVRRRMDETGVKKDAGCSWIEINNEVHTFASRDMSHPNSDSIYQMLGELVAV 687

Query: 301 RRLFDEMPKRDVVAC 315
            + FDE+   DV  C
Sbjct: 688 MQDFDELEPFDVHIC 702


>gi|224092607|ref|XP_002309680.1| predicted protein [Populus trichocarpa]
 gi|222855656|gb|EEE93203.1| predicted protein [Populus trichocarpa]
          Length = 500

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 178/516 (34%), Positives = 289/516 (56%), Gaps = 36/516 (6%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           WN IIK +    D  +A+V +  + + G   D F+  ++LKA         GL +HG   
Sbjct: 18  WNEIIKKHVLNGDAVQAMVTYVNVQEIGFHADNFTFPILLKAAGSWSSPCIGLALHGQTI 77

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           K  F S +F+Q  L+++Y                      S++ + D          A +
Sbjct: 78  KAGFSSHVFVQTALLNMYR---------------------SHSCVAD----------ACK 106

Query: 207 LFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKM 266
           +F+ MP+++  +++WNS+L+ YA     +  A ++F  MP +DL S+N M+ G    GK 
Sbjct: 107 VFEKMPVKD--VVAWNSILDAYASTDQ-MDDALKVFNSMPLKDLSSFNIMISGYSSIGKT 163

Query: 267 DDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNG 326
             A+++FD M ++D+VSW +MI  Y +   ++ A  LF EMP ++++  N M+ G+++N 
Sbjct: 164 LSARSIFDNMAEKDIVSWNSMISAYIQGEDMERACDLFREMPAKNIITWNTMVKGFLQNQ 223

Query: 327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG 386
              + L++FD M+    L PD  ++  VLSA A  G + KG  +H Y   +  + +    
Sbjct: 224 LYAEVLDLFDEMKTTNCL-PDYLTVTGVLSACAHSGSLKKGTEVHIYAIDNGLASSPHVT 282

Query: 387 VALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE 446
            ALIDMY+KCGSI+  ++VF + +   +  WNA+I+GLA+HG G  A ++  +M +    
Sbjct: 283 TALIDMYAKCGSIQQGLQVFYKSQVKDIYCWNALISGLALHGHGYAALNIFNKMRKNHTR 342

Query: 447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARN 506
           PDDITF GLL+AC+H+GLV+EG   F  M++   + P+++HYGCMVD+L RA H++ A  
Sbjct: 343 PDDITFIGLLSACSHSGLVQEGSQLFYSMQKEFGISPKIEHYGCMVDLLSRARHLDCALQ 402

Query: 507 LIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL-SNMFAGLG 565
           LI+ MP +P + I   LLSAC  +++L VGE V K +    +  S   +++ SN++A  G
Sbjct: 403 LIKTMPFKPGEAILGALLSACIVHQDLEVGERVVKLVSSRGNYLSDGELMMFSNLYASCG 462

Query: 566 MWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
            W +A + R MM +  + K  G S +E+ G  H+F 
Sbjct: 463 QWEEANKWREMMNDTGIVKTAGFSVVEVNGKFHKFL 498



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 96/242 (39%), Gaps = 45/242 (18%)

Query: 78  FRE--KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
           FRE   K+   WN ++K +       E L +F  M       D  + + VL AC+  G +
Sbjct: 201 FREMPAKNIITWNTMVKGFLQNQLYAEVLDLFDEMKTTNCLPDYLTVTGVLSACAHSGSL 260

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
           ++G ++H         S   +   LI +Y +CG ++   Q+F K  ++D   +N++I G 
Sbjct: 261 KKGTEVHIYAIDNGLASSPHVTTALIDMYAKCGSIQQGLQVFYKSQVKDIYCWNALISGL 320

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER----DLI 251
              G                          +GYA L         IF KM +     D I
Sbjct: 321 ALHG--------------------------HGYAAL--------NIFNKMRKNHTRPDDI 346

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS-----WANMIDGYAKLGRVDIARRLFDE 306
           ++  +L  C   G + +   LF  M K   +S     +  M+D  ++   +D A +L   
Sbjct: 347 TFIGLLSACSHSGLVQEGSQLFYSMQKEFGISPKIEHYGCMVDLLSRARHLDCALQLIKT 406

Query: 307 MP 308
           MP
Sbjct: 407 MP 408



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 14/162 (8%)

Query: 26  TLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPF 85
           +L    ++H   I  G   + H+TT L+  ++   C  + +    +F+K     + KD +
Sbjct: 259 SLKKGTEVHIYAIDNGLASSPHVTTALIDMYAK--CGSIQQ-GLQVFYK----SQVKDIY 311

Query: 86  LWNAIIK---TYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI- 141
            WNA+I     + HG     AL +F  M  N    D  +   +L ACS  GL++EG Q+ 
Sbjct: 312 CWNALISGLALHGHGY---AALNIFNKMRKNHTRPDDITFIGLLSACSHSGLVQEGSQLF 368

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183
           + + ++      +    C++ L  R  +L+ A QL   M  +
Sbjct: 369 YSMQKEFGISPKIEHYGCMVDLLSRARHLDCALQLIKTMPFK 410


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 194/609 (31%), Positives = 326/609 (53%), Gaps = 44/609 (7%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+ C  L+ +   N +HA+++  GF  +T ++T L+  ++      L E      +K  
Sbjct: 177 ILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYA-----KLQEIEDS--YKVF 229

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
               + +   WNA+I  ++      +A  +F  M+  GV+ D  +   V KA   L  + 
Sbjct: 230 NTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVN 289

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI--RDSVSYNSMIDG 194
           +  ++ G   ++   S+  +   LI +  +CG L+ AR +F+   I  R +  +N+MI G
Sbjct: 290 KAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISG 349

Query: 195 YVKSGNIESARELFDSMPIRERNL--ISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLIS 252
           Y++SG  E A ELF  M   +  L   ++ SV N  A LK                    
Sbjct: 350 YLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALK-------------------- 389

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMI-DGYAKLGRVDIARRLFDEMPKRD 311
                  C+  GK   A+A+   + + + VS +N + + YAK G ++  R++F+ M  RD
Sbjct: 390 -------CLSLGKKVHARAIKSGL-EVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRD 441

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           +++  +++  Y +     KA+EIF NM+ E  + P+  +   VL + A L  ++ G  +H
Sbjct: 442 LISWTSLVTAYSQCSEWDKAIEIFSNMRAE-GIAPNQFTFSSVLVSCANLCLLEYGQQVH 500

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
             + K    ++     AL+DMY+KCG + +A KVF +I +     W A+I G A HG+ +
Sbjct: 501 GIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVD 560

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            A  L   M +L +EP+ +TF  +L AC+H GLV+EGL  F+LM++ + L PE++HY C+
Sbjct: 561 DALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACI 620

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551
           VD+L R GH+  A   I  MP+EPN+++W+TLL ACR + N+ +GE  A+ ++   + NS
Sbjct: 621 VDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENS 680

Query: 552 SSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVR 611
           ++YVLLSN +   G + D   +R +MKE+ +KK PGCSWI + G +H+F+  D+   +  
Sbjct: 681 ATYVLLSNTYIESGSYKDGLSLRHVMKEQGVKKEPGCSWISVNGTLHKFYAGDQQHPEKD 740

Query: 612 DIYYMLDNM 620
            IY  L+ +
Sbjct: 741 KIYAKLEEL 749



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 163/401 (40%), Gaps = 83/401 (20%)

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
            Y+K   +D A RLFD+M +R+  +   ++ G   NG  +   E F  MQ +  + PD  
Sbjct: 114 AYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQ-GIFPDQF 172

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           +   +L     L  I+ G  +H  +    F+ +     AL++MY+K   IE++ KVF  +
Sbjct: 173 AYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTM 232

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
            + +V  WNAMI G   + L   AFDL + M    + PD  TF G+  A           
Sbjct: 233 TEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIG--------- 283

Query: 470 LCFELMRRIHKLEPELQHYG-------------CMVDILGRAGHIEAARNLIED------ 510
               ++R ++K + E+  Y               ++D+  + G ++ AR++         
Sbjct: 284 ----MLRDVNKAK-EVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCR 338

Query: 511 -------------------------MPMEPNDV-----IWRTLLSACRNYENLNVGEPVA 540
                                      M  ND+      + ++ +A    + L++G+ V 
Sbjct: 339 FNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKV- 397

Query: 541 KHLIGMDSSNSSSYVLLS----NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
            H   + S    +YV +S    N +A  G   D R+V + M++R+L      SW  L   
Sbjct: 398 -HARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDL-----ISWTSLVTA 451

Query: 597 VHEFFVRDK-----SRLQVRDIYYMLDNMWTPDSVATSCTH 632
             +    DK     S ++   I     N +T  SV  SC +
Sbjct: 452 YSQCSEWDKAIEIFSNMRAEGI---APNQFTFSSVLVSCAN 489



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 17/148 (11%)

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALID---- 391
           D     L + P    LV +L        + +   +H +L K +FS    H + L++    
Sbjct: 60  DKTDSHLQIQP----LVDLLRDCVDARFLKQAKTVHGFLLKSKFS--NHHSLVLLNHVAH 113

Query: 392 MYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDIT 451
            YSKC  I+ A ++F+Q+   +   W  +I GLA +GL    F+   EM+   I PD   
Sbjct: 114 AYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFA 173

Query: 452 FTGLLNACAHAGLVKEGLLCFELMRRIH 479
           ++G+L  C        GL   EL   +H
Sbjct: 174 YSGILQICI-------GLDSIELGNMVH 194


>gi|125528598|gb|EAY76712.1| hypothetical protein OsI_04667 [Oryza sativa Indica Group]
          Length = 548

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 180/532 (33%), Positives = 297/532 (55%), Gaps = 22/532 (4%)

Query: 79  REKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
           R  +DP +W  + K Y+     +EA +++  +L +          L+    SR   +  G
Sbjct: 16  RGCRDPDMWANLAKVYASNSFLREAAIIYSKLLPHRTHHLPLVIVLLKATASRADPVL-G 74

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
             +H    K A   D  +   L+S+Y +CG L  AR++FD M  R++V+ N+M+ GY  +
Sbjct: 75  RALHAEAVKSANAHDRLVGTTLVSVYCKCGLLADARRVFDGMLDRNAVTCNAMLAGYAAA 134

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP--ERDLISWNSM 256
           G++ SA  LF  M    R  ++W +++ G+A  K  +    + FE MP   +++++W   
Sbjct: 135 GDMVSAEALFAGMG--SRTPVTWATLIRGFAG-KGDMAETRRWFEAMPLGMQNVVTWTVA 191

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
           +   V  G M+ A+ LF+KMP R+   W++M+ G  K G  D A+ +FD++P R++V  N
Sbjct: 192 VQAYVAAGDMETARELFNKMPARNAFVWSSMVTGNFKAGNADEAQAVFDKIPVRNLVNWN 251

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL-- 374
           A++ GY + G   KALE F +M  +  + PD+ ++  VLSA AQLG +++   +H ++  
Sbjct: 252 ALIAGYAKMGCCEKALEAFHSMLKD-KIKPDEFTMAGVLSACAQLGSLEQARKVHNFIIQ 310

Query: 375 ---EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
               K+QF +NG     L+DM++KCG +  A  +F+ ++  + + WN+MI+ L+ HG   
Sbjct: 311 HRIRKNQFVMNG-----LVDMFAKCGDLAFARNIFDNMQWRNTECWNSMISALSSHGQSI 365

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            A  L  +ME    +P++IT   +L AC H G V EGL  F     I+ +   ++HYGC+
Sbjct: 366 EAIRLFSKMECSEQKPNEITLLAVLGACTHGGFVDEGLRIFSKF-DIYGVAAAVEHYGCL 424

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD---- 547
           VD+LGRAG +  A  ++++M +EPN+VIW +LL ACR + +  + E V+  +  +     
Sbjct: 425 VDLLGRAGRLREAYEIVKNMLVEPNEVIWGSLLGACRVHGDAEMSELVSSEIHQLHSRRV 484

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHE 599
           S+N + Y+LLSN+ A    W  A R+R  M    + K PGCS +ELE   H+
Sbjct: 485 STNDAEYILLSNIMASSERWEQAERMRRKMALHGVGKTPGCSSVELEITEHQ 536


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 189/470 (40%), Positives = 277/470 (58%), Gaps = 22/470 (4%)

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIES--ARELFDSM---PIRERNLISWNSV 224
           L++A ++F++M  R+  S+N++I G+ +S   ++  A  LF  M      E N  ++ SV
Sbjct: 68  LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSV 127

Query: 225 LNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK------ 275
           L   A+   ++ G Q      +     D    ++++   V CG M DA  LF K      
Sbjct: 128 LKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIERE 187

Query: 276 ------MPKRD--VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGY 327
                   KRD  VV W  MIDGY +LG    AR LFD+M +R VV+ N M+ GY +NG+
Sbjct: 188 MVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGF 247

Query: 328 SMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV 387
              A+E+F  M+    + P+  +LV VL A+++LG ++ G  +H Y E     ++   G 
Sbjct: 248 FKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGS 307

Query: 388 ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP 447
           ALIDMYSKCG IE AI VFE++   +V  W+AMING AIHG    A D   +M +  + P
Sbjct: 308 ALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRP 367

Query: 448 DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNL 507
            D+ +  LL AC+HAGLV+EG   F  M  +  LEP ++HYGCMVD+LGR G ++ A   
Sbjct: 368 SDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEF 427

Query: 508 IEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMW 567
           I +MP++P+DVIW+ LL ACR + N+ +G+ VA  L+ M   +S +YV LSNM+A  G W
Sbjct: 428 ILNMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNW 487

Query: 568 NDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           ++   +R  MKE +++K PGCSWI+++GV+HEF V D S  + ++I  ML
Sbjct: 488 SEVSEMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSML 537



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 139/482 (28%), Positives = 249/482 (51%), Gaps = 71/482 (14%)

Query: 7   YNQPCNSTQSTLL-LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLT 65
           Y+   NS  S+L   +  C+T+ D++QIHA  I +G I++T L    +  F    C    
Sbjct: 8   YSPGGNSPASSLFPQINTCRTIRDLSQIHAVFIKSGQIRDT-LAAAEILRF----CATSD 62

Query: 66  EFARYIFFKYHAFRE--KKDPFLWNAIIKTYSHGLDPKE--ALVMFC-LMLDNGVSVDKF 120
              R + + +  F +  +++ F WN II+ +S   + K   A+ +FC +M D  +  ++F
Sbjct: 63  LHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRF 122

Query: 121 SASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
           +   VLKAC++ G I++G QIHGL  K  FG D F+ + L+ +YV CG ++ A  LF K 
Sbjct: 123 TFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKN 182

Query: 181 GI------------RDS--VSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLN 226
            I            RD   V +N MIDGY++ G+ ++AR LFD M  R+R+++SWN++++
Sbjct: 183 IIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKM--RQRSVVSWNTMIS 240

Query: 227 GYAQLKSGLQFAWQIFEKMPERDLISWN-----SMLHGCVKCGKMDDAQALF----DKMP 277
           GY+Q     + A ++F +M + + I  N     S+L    + G ++  + L     D   
Sbjct: 241 GYSQ-NGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGI 299

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
           + D V  + +ID Y+K G ++ A  +F+ +P+ +V+  +AM+ G+  +G +  A++ F  
Sbjct: 300 RIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCK 359

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
           M+ +  + P D + + +L+A +  G +++G    RY  +   S++G              
Sbjct: 360 MR-QAGVRPSDVAYINLLTACSHAGLVEEG---RRYFSQ-MVSVDGL------------- 401

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
                        +  ++H+  M++ L   GL + A + ++ M    I+PDD+ +  LL 
Sbjct: 402 -------------EPRIEHYGCMVDLLGRLGLLDEAEEFILNM---PIKPDDVIWKALLG 445

Query: 458 AC 459
           AC
Sbjct: 446 AC 447


>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1221

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 184/611 (30%), Positives = 309/611 (50%), Gaps = 73/611 (11%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +K+   W +++  Y+    P+ AL MF  M+++GV+ + F+ +  L AC+ LG +  G Q
Sbjct: 3   RKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQ 62

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H L  +  F  D ++ +CLI +Y RCG L  A+++FD+M   D V Y S+I  + ++G 
Sbjct: 63  VHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGE 122

Query: 201 IESARE-----------------------------------LFDSMPIRERNLISWNSVL 225
            E A E                                   L   + +R +++ S  +++
Sbjct: 123 FELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTALI 182

Query: 226 NGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM------P-- 277
           + Y++     + A  +F+ +  ++++SW SM+   ++ G++++A  +F  M      P  
Sbjct: 183 DFYSR-NGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNE 241

Query: 278 ------------------------KRDVVS----WANMIDGYAKLGRVDIARRLFDEMPK 309
                                   K D+++       ++  Y + G V+    + +++  
Sbjct: 242 FALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIEN 301

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
            D+V+    +    +NG+  KA+ +   M  E +  P+  +   VLS+ A +  +D+G+ 
Sbjct: 302 PDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFT-PNGYAFSSVLSSCADVASLDQGMQ 360

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
            H    K         G ALI+MYSKCG + +A   F+ +    V  WN++I+G A HG 
Sbjct: 361 FHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGD 420

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
              A ++  +M    I+PDD TF G+L  C H+G+V+EG L F LM   +   P   HY 
Sbjct: 421 ANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYA 480

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549
           CM+D+LGR G  + A  +I DMP EP+ +IW+TLL++C+ + NL++G+  A  L+ +   
Sbjct: 481 CMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDR 540

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQ 609
           +S+SYVL+SN++A  G W DAR+VR  M E  +KK  GCSWIE+   VH F  RD S   
Sbjct: 541 DSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINNEVHTFASRDMSHPN 600

Query: 610 VRDIYYMLDNM 620
              IY ML  +
Sbjct: 601 SDSIYQMLGEL 611



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 111/425 (26%), Positives = 194/425 (45%), Gaps = 60/425 (14%)

Query: 31  NQIHARMITTGFIKNTHL--TTKLVASFSSSPCTPLTEF--ARYIFFKYHAFREKKDPFL 86
            QIH  +I    +++  +  +T L+  +S +      EF  A+ +F   H     K+   
Sbjct: 158 QQIHGYLIKKIGLRSQSVYSSTALIDFYSRN-----GEFKLAKAVFDSLHC----KNVVS 208

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           W ++++ Y      +EAL +F  M+  GV  ++F+ S+VL AC  +GL   G Q+H    
Sbjct: 209 WCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGL---GRQLHCSAI 265

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           K    +D+ + N L+S+Y R G +E    + +K+   D VS+ + I    ++G  E A  
Sbjct: 266 KHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIA 325

Query: 207 LFDSMPIR--ERNLISWNSVLNG---YAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
           L   M       N  +++SVL+     A L  G+QF     +   + ++ + N++++   
Sbjct: 326 LLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYS 385

Query: 262 KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
           KCG+M  A+  FD M   DV SW ++I G+A+ G  +                       
Sbjct: 386 KCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDAN----------------------- 422

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
                   KALE+F  M+    + PDD++ + VL      G +++G    R L  DQ+S 
Sbjct: 423 --------KALEVFSKMRSN-GIKPDDSTFLGVLMGCNHSGMVEEGELFFR-LMIDQYSF 472

Query: 382 N--GKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIH---GLGELAFD 435
                H   +IDM  + G  + A+++   +  +     W  ++    +H    +G+LA D
Sbjct: 473 TPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAAD 532

Query: 436 LLMEM 440
            LME+
Sbjct: 533 RLMEL 537



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 115/219 (52%), Gaps = 7/219 (3%)

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           MP+++VVA  ++M GY RNG    AL +F +M  E  + P+D +    L A A LG +  
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADM-VESGVAPNDFACNAALVACADLGALRA 59

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G  +H    +  F+ +   G  LI+MYS+CGS+  A +VF++++   V  + ++I+    
Sbjct: 60  GEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCR 119

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA-GLVKEGLLCFELMRRIHKLEPEL 485
           +G  ELA + L++M +  ++P++ T T +L AC    G    G     L+++I      +
Sbjct: 120 NGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGY----LIKKIGLRSQSV 175

Query: 486 QHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
                ++D   R G  + A+ + + +  + N V W +++
Sbjct: 176 YSSTALIDFYSRNGEFKLAKAVFDSLHCK-NVVSWCSMM 213



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 128/296 (43%), Gaps = 44/296 (14%)

Query: 19  LLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAF 78
           ++L  C ++    Q+H   I    I +  ++  L++ +     T L E    +  K    
Sbjct: 246 IVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGR---TGLVEELEAMLNKI--- 299

Query: 79  REKKDPFLWN-AIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
            E  D   W  AI   + +G   K A+ + C M   G + + ++ S VL +C+ +  +++
Sbjct: 300 -ENPDLVSWTTAISANFQNGFGEK-AIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQ 357

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G+Q H L  K+   S++   N LI++Y +CG +  AR  FD M   D  S+NS+I G+ +
Sbjct: 358 GMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQ 417

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
            G+   A E+F  M  R   +   +S   G                            +L
Sbjct: 418 HGDANKALEVFSKM--RSNGIKPDDSTFLG----------------------------VL 447

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVVS-----WANMIDGYAKLGRVDIARRLFDEMP 308
            GC   G +++ +  F  M  +   +     +A MID   + GR D A R+ ++MP
Sbjct: 448 MGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMP 503


>gi|115461705|ref|NP_001054452.1| Os05g0112900 [Oryza sativa Japonica Group]
 gi|45680436|gb|AAS75237.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578003|dbj|BAF16366.1| Os05g0112900 [Oryza sativa Japonica Group]
 gi|215715346|dbj|BAG95097.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215736909|dbj|BAG95838.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629956|gb|EEE62088.1| hypothetical protein OsJ_16872 [Oryza sativa Japonica Group]
          Length = 661

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 175/503 (34%), Positives = 265/503 (52%), Gaps = 37/503 (7%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN 217
            C++S Y R G ++ AR+LFD M  R+  S+ +M+ GY  +G +  ARE+FD MP  ERN
Sbjct: 158 TCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTTMVQGYAHNGMLREAREMFDKMP--ERN 215

Query: 218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP 277
           +++W  ++  Y      +Q A ++F +MP+ +  SWN+M  G +  GK+DDA  LFDKMP
Sbjct: 216 VVAWTVMVKAYVD-NGCIQEALELFNRMPQMNSYSWNAMATGLMSAGKVDDAVQLFDKMP 274

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
            ++VVSW  M+ G A+ G V  AR  FD MPK+D+ A N+M+  Y  +G    A  +FD 
Sbjct: 275 HKNVVSWTIMVTGLAQNGFVSRAREFFDRMPKKDIPAWNSMITAYTNDGQVNDAQRLFDI 334

Query: 338 MQCE-----------------------LYL-------HPDDASLVIVLSAIAQLGHIDKG 367
           M  +                       L+L        PD  +L+ VL        + + 
Sbjct: 335 MPSKNLVTWNIIIDGYSMNNLKDEALRLFLLMLRSAVSPDSTTLISVLVVSESTMEVRQ- 393

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
             IH    K  +      G  L+ MYS+ G + +A   F ++ +     W +MI  LA H
Sbjct: 394 --IHGLSTKLGYQPETNLGNTLVSMYSRSGDLSSAWLAFRRLNEKDAITWTSMIQALANH 451

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           G    A     +M R   +P   TFT +L+AC H GLV++G   F+ +  ++ L P ++H
Sbjct: 452 GCAPCALQGFAQMLRCGYKPSSTTFTAVLSACNHVGLVEKGRKIFKSISHVYGLGPTIEH 511

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPND-VIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           Y C+VD+LGRAG++  A+ +++ M  +  D  I  TLL +C  +  + VG  V + L+ +
Sbjct: 512 YSCLVDLLGRAGYVREAKEVVDGMQRDMCDEAILGTLLGSCMTHNEVEVGRAVGEDLVKI 571

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           D S S  Y LL+N+FA  GMWN+   V  +MK   +KK PG S IE+    H F+ RD+ 
Sbjct: 572 DPSGSGGYTLLANVFASGGMWNEVASVWKIMKGSKVKKTPGFSQIEVNARNHVFYSRDQM 631

Query: 607 RLQVRDIYYMLDNMWTPDSVATS 629
             Q  +IY ML++   P    +S
Sbjct: 632 HSQRTEIYEMLNSRLVPQMKGSS 654



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 194/390 (49%), Gaps = 53/390 (13%)

Query: 176 LFDKMGIRD-SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG 234
           +FD M  RD +V+Y +M+  ++   ++  A  L+ + P   R +     +L+GY  +K+G
Sbjct: 80  MFDGMPRRDDAVAYAAMVGIHLWDRDLPHAEALYRAAPPDCRGIHLDTVMLDGY--VKAG 137

Query: 235 -LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAK 293
            +  A ++F+ M  +++++W  M+ G  + G +D+A+ LFD MP R+V SW  M+ GYA 
Sbjct: 138 QVDRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTTMVQGYAH 197

Query: 294 LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM-QCELY--------- 343
            G +  AR +FD+MP+R+VVA   M+  YV NG   +ALE+F+ M Q   Y         
Sbjct: 198 NGMLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELFNRMPQMNSYSWNAMATGL 257

Query: 344 ----------------LHPDDASLVIVLSAIAQLGHIDKGVA-IHRYLEKDQFSLNGKHG 386
                            H +  S  I+++ +AQ G + +      R  +KD  + N    
Sbjct: 258 MSAGKVDDAVQLFDKMPHKNVVSWTIMVTGLAQNGFVSRAREFFDRMPKKDIPAWN---- 313

Query: 387 VALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE 446
            ++I  Y+  G + +A ++F+ +   ++  WN +I+G +++ L + A  L + M R ++ 
Sbjct: 314 -SMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKDEALRLFLLMLRSAVS 372

Query: 447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL------EPELQHYGCMVDILGRAGH 500
           PD  T   +L       +V E  +    +R+IH L      +PE      +V +  R+G 
Sbjct: 373 PDSTTLISVL-------VVSESTM---EVRQIHGLSTKLGYQPETNLGNTLVSMYSRSGD 422

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSACRNY 530
           + +A      +  E + + W +++ A  N+
Sbjct: 423 LSSAWLAFRRLN-EKDAITWTSMIQALANH 451



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 130/333 (39%), Gaps = 66/333 (19%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           K+   WN II  YS      EAL +F LML + VS D  +   VL          E  QI
Sbjct: 338 KNLVTWNIIIDGYSMNNLKDEALRLFLLMLRSAVSPDSTTLISVLVVSES---TMEVRQI 394

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           HGL  K+ +  +  L N L+S+Y R G L  A   F ++  +D++++ SMI      G  
Sbjct: 395 HGLSTKLGYQPETNLGNTLVSMYSRSGDLSSAWLAFRRLNEKDAITWTSMIQALANHGCA 454

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQ-LKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
             A                    L G+AQ L+ G + +   F            ++L  C
Sbjct: 455 PCA--------------------LQGFAQMLRCGYKPSSTTF-----------TAVLSAC 483

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
              G ++  + +F  +    V      I+ Y+ L  VD+  R                  
Sbjct: 484 NHVGLVEKGRKIFKSISH--VYGLGPTIEHYSCL--VDLLGR-----------------A 522

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           GYVR     +A E+ D MQ ++    D+A L  +L +      ++ G A+   L K    
Sbjct: 523 GYVR-----EAKEVVDGMQRDMC---DEAILGTLLGSCMTHNEVEVGRAVGEDLVK--ID 572

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
            +G  G  L+      G + N +    +I  GS
Sbjct: 573 PSGSGGYTLLANVFASGGMWNEVASVWKIMKGS 605



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 16/174 (9%)

Query: 13  STQSTLLL--LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY 70
           S  ST L+  L   ++  +V QIH      G+   T+L   LV+ +S S           
Sbjct: 372 SPDSTTLISVLVVSESTMEVRQIHGLSTKLGYQPETNLGNTLVSMYSRSG---------D 422

Query: 71  IFFKYHAFRE--KKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           +   + AFR   +KD   W ++I+  + HG  P  AL  F  ML  G      + + VL 
Sbjct: 423 LSSAWLAFRRLNEKDAITWTSMIQALANHGCAPC-ALQGFAQMLRCGYKPSSTTFTAVLS 481

Query: 128 ACSRLGLIEEGLQIHGLLRKV-AFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
           AC+ +GL+E+G +I   +  V   G  +   +CL+ L  R GY+  A+++ D M
Sbjct: 482 ACNHVGLVEKGRKIFKSISHVYGLGPTIEHYSCLVDLLGRAGYVREAKEVVDGM 535



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 121/285 (42%), Gaps = 29/285 (10%)

Query: 303 LFDEMPKR-DVVACNAMMGGYV--RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           +FD MP+R D VA  AM+G ++  R+    +AL       C   +H D     ++L    
Sbjct: 80  MFDGMPRRDDAVAYAAMVGIHLWDRDLPHAEALYRAAPPDCR-GIHLD----TVMLDGYV 134

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
           + G +D+     R L       N      ++  Y + G ++ A ++F+ +   +V  W  
Sbjct: 135 KAGQVDRA----RRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTT 190

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           M+ G A +G+   A ++  +M   ++    + +T ++ A    G ++E L  F  M    
Sbjct: 191 MVQGYAHNGMLREAREMFDKMPERNV----VAWTVMVKAYVDNGCIQEALELFNRM---- 242

Query: 480 KLEPELQHYG--CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
              P++  Y    M   L  AG ++ A  L + MP + N V W  +++       ++   
Sbjct: 243 ---PQMNSYSWNAMATGLMSAGKVDDAVQLFDKMPHK-NVVSWTIMVTGLAQNGFVSRAR 298

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
                +   D    +S +     +   G  NDA+R+  +M  +NL
Sbjct: 299 EFFDRMPKKDIPAWNSMI---TAYTNDGQVNDAQRLFDIMPSKNL 340


>gi|326498517|dbj|BAJ98686.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 647

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 199/649 (30%), Positives = 329/649 (50%), Gaps = 89/649 (13%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR- 79
           L +C ++  + QIH + I +G + +    ++L+   S++   P        F  +H+FR 
Sbjct: 11  LARCSSVRHLLQIHGQFIASGLLADAFAASRLLLFTSATRLLP--------FPIHHSFRL 62

Query: 80  ----EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
                  + F  N ++K       P   L ++  +     S D ++  ++  AC+    +
Sbjct: 63  LRLVRCPNAFSCNTLLKAALLAGMPHLCLPLYTSL---PASPDTYTHPILAAACAARRDV 119

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
            EG Q+     +  FG DL+L+N L+ +Y  CG L  AR++FD   + D+VS+N+++  Y
Sbjct: 120 SEGRQVQSHAIRHGFGDDLYLRNALMHMYSVCGCLWDARRVFDAGPVWDAVSWNTILAAY 179

Query: 196 VKSGNI-------------------------------ESARELFDSMPIRERNLISWNSV 224
           V +G++                               E AR +FD    R+  + +W ++
Sbjct: 180 VHAGDVDQAVGVFARMPKRNATAVSSMVSLFGRRGMVEEARGVFDEAECRD--IFTWTAM 237

Query: 225 LNGYAQ---LKSGLQF-------AWQIFEKM--------PERDLISWNSMLHGCVK---- 262
           ++ + +       L          W + E +         + ++I    + HG V     
Sbjct: 238 ISCFERNDMFAEALHMFSCMRREMWPVDEALMVSVVAACAQSEVIRNGELCHGLVIRAGL 297

Query: 263 ----------------CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
                           C  +  A+ LFD     D  SW +MI GY K G V+ A  LF  
Sbjct: 298 CSLLNIQNVLIHMYSCCLDVVAARRLFDSGDCLDQFSWNSMIAGYLKNGHVENAMTLFSA 357

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           MP +D V+ + M+ G V+N  S  AL +FDNM+ +  + PD+ ++V V+SA   L  ++K
Sbjct: 358 MPDKDNVSWSTMISGCVQNNQSSHALTVFDNMRAQ-GVRPDEVTIVSVISACTNLSALEK 416

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G ++H Y+ +++  +    G +LIDMY KCG +E A+ VF  +E+     WNA+I GLA+
Sbjct: 417 GKSVHDYVRQNKCYITLVLGTSLIDMYMKCGYLEAAMDVFNIMEEKGAPCWNAVIVGLAM 476

Query: 427 HGLGELAFDLLMEMERLSIE-PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL 485
           +GL   + ++  EME  S   P++ITFTG+L+AC HAGLV+EG   F+LM+  +++ P +
Sbjct: 477 NGLVTKSLEIFSEMEASSTAIPNEITFTGVLSACRHAGLVEEGRHFFKLMQHKYQIVPNI 536

Query: 486 QHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIG 545
           +HYGCMVD+LGRAG+++ A +LIE MPM P+   W  LL AC  +    VGE V + L+ 
Sbjct: 537 RHYGCMVDLLGRAGYVKEAEDLIESMPMSPDVPAWGALLGACWKHGENEVGERVGRKLVN 596

Query: 546 MDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           +D  +     +LSN++A  GMW     +R  MK+R++ K+ G S +E+ 
Sbjct: 597 LDPRHDGFQTMLSNIYAKEGMWQSVNDLRDSMKQRHVPKVSGYSVVEMS 645


>gi|414886077|tpg|DAA62091.1| TPA: methyltransferase small domain protein [Zea mays]
          Length = 656

 Score =  314 bits (805), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 188/558 (33%), Positives = 296/558 (53%), Gaps = 52/558 (9%)

Query: 79  REKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
           R  +D   +  ++ +++       A+ +F  ML   V  ++ + +  + A +R G     
Sbjct: 104 RIHRDAVSYTTLVTSFARAGHAARAVAVFRSMLSENVVPNEATLAGAITAFARCGAPATV 163

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF--ARQLFDKMGIRDSVSYNSMIDGYV 196
             IHG   + A    + +   L+  Y   G LE   AR LFD M  R++V++N M++GYV
Sbjct: 164 GMIHGFALQRALDGFVIVATNLVHAY--AGVLELCSARALFDGMTYRNTVTWNVMLNGYV 221

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGY---------------------------- 228
           K+  I+ A E+F  +P  ER+ +SW ++++GY                            
Sbjct: 222 KAKMIDMAAEVFWRIP--ERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDYEVL 279

Query: 229 -----------AQLKSGLQFAWQIFEKMPERDLISWNSMLH--GCVKCGKMDDAQALFDK 275
                      + +  G Q    I +   +       +++H  GC  CG +  AQ  F  
Sbjct: 280 LVDLMKACARYSAVTEGQQLHTVILKNGFDAHAFVQATLVHFYGC--CGLIGLAQMTFRL 337

Query: 276 MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
             K    SW  ++    + G +  AR LFD+MP+RD V+ + M+ GYV+ G S  AL++F
Sbjct: 338 SDKSHTASWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLF 397

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
            +M     + P++ +L   LSAIA  G +D+G  IH Y+      L       LIDMY+K
Sbjct: 398 YSM-LNTSIEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTDNLSSGLIDMYAK 456

Query: 396 CGSIENAIKVFEQIED--GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
           CGSI +A++ F ++ D   SV  WNAMI  LAIHG   ++ DL  +++R SI+P+ ITF 
Sbjct: 457 CGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFI 516

Query: 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPM 513
           G+L+AC HAG V +G   FE M R + ++P ++HYGCMVD+LGRAG++E A  L+  MPM
Sbjct: 517 GVLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQLVSMMPM 576

Query: 514 EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV 573
           +P+ VIW ++LSA R   N+ +GE  A+ L  +D ++ +S + LSN++A  G W +   V
Sbjct: 577 KPDVVIWGSILSASRAQGNVALGERAAEELAKLDQTHGASKIALSNIYADAGHWINVSVV 636

Query: 574 RSMMKERNLKKLPGCSWI 591
           R  +++ NL++L G S I
Sbjct: 637 RKELQDANLERLTGRSGI 654



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 104/458 (22%), Positives = 198/458 (43%), Gaps = 78/458 (17%)

Query: 122 ASLVLKACSRLGLIEEGLQIHGLLRKVAF-GSDLFLQNCLISLYVRC-GYLEFARQLFDK 179
           A  ++ +  R   +  G Q+H L  K     S++F++N ++S Y R    L  A QLFD+
Sbjct: 9   APFLVASLKRAARLRCGEQLHALAAKSGLLASNVFVRNSVLSSYSRLPSSLASALQLFDE 68

Query: 180 MG--IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF 237
               +RD+ + NS++    ++G ++ A+ L + MP   R+ +S+ +++  +A+     + 
Sbjct: 69  TPPPLRDATARNSVLAALTRAGYLDRAQGLLEEMPRIHRDAVSYTTLVTSFARAGHAAR- 127

Query: 238 AWQIFEKMPERDLISWNSMLHGCV----KCG----------------------------- 264
           A  +F  M   +++   + L G +    +CG                             
Sbjct: 128 AVAVFRSMLSENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDGFVIVATNLVH 187

Query: 265 ------KMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
                 ++  A+ALFD M  R+ V+W  M++GY K   +D+A  +F  +P+RD V+   +
Sbjct: 188 AYAGVLELCSARALFDGMTYRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTL 247

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
           + GY+       A++ +  M  E+  +  +  LV ++ A A+   + +G  +H  + K+ 
Sbjct: 248 IDGYICADLISDAMKAYVQMVGEVGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNG 307

Query: 379 FSLNGKHGVALIDMYSKC-------------------------------GSIENAIKVFE 407
           F  +      L+  Y  C                               G I  A ++F+
Sbjct: 308 FDAHAFVQATLVHFYGCCGLIGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFD 367

Query: 408 QIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKE 467
            + +     W+ MI+G    G  ++A  L   M   SIEP+++T    L+A A +G + +
Sbjct: 368 DMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLNTSIEPNEVTLASALSAIADSGTLDQ 427

Query: 468 GLLCFE-LMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504
           G    + +M R  +L   L     ++D+  + G I  A
Sbjct: 428 GKWIHDYIMNRPVQLTDNLS--SGLIDMYAKCGSIADA 463


>gi|226531155|ref|NP_001148193.1| methyltransferase small domain [Zea mays]
 gi|195616632|gb|ACG30146.1| methyltransferase small domain [Zea mays]
          Length = 656

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 188/558 (33%), Positives = 296/558 (53%), Gaps = 52/558 (9%)

Query: 79  REKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
           R  +D   +  ++  ++       A+ +F  ML   V  ++ + +  + A +R G     
Sbjct: 104 RIHRDAVSYTTLVTAFARAGHAARAVAVFRSMLSENVVPNEATLAGAITAFARCGAPATV 163

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF--ARQLFDKMGIRDSVSYNSMIDGYV 196
             IHG   + A    + +   L+  Y   G LE   AR LFD M  R++V++N M++GYV
Sbjct: 164 GMIHGFALQRALDGFVIVATNLVHAY--AGVLELCSARALFDGMTHRNTVTWNVMLNGYV 221

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYA-------QLKSGLQFAWQI-------- 241
           K+  I+ A E+F  +P  ER+ +SW ++++GY         +K+ +Q   ++        
Sbjct: 222 KAKMIDMAAEVFWRIP--ERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDYEVL 279

Query: 242 ----FEKMPERDLISWNSMLH----------------------GCVKCGKMDDAQALFDK 275
                +       ++    LH                      GC  CG +  AQ  F  
Sbjct: 280 LVDLMKACARYSAVTEGQQLHTVILKNGFDALAFVQATLVHFYGC--CGLIGLAQMTFRL 337

Query: 276 MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
             K    SW  ++    + G +  AR LFD+MP+RD V+ + M+ GYV+ G S  AL++F
Sbjct: 338 SDKSHTASWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLF 397

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
            +M     + P++ +L   LSAIA  G +D+G  IH Y+      L       LIDMY+K
Sbjct: 398 YSM-LNTSIEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTDNLSSGLIDMYAK 456

Query: 396 CGSIENAIKVFEQIED--GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
           CGSI +A++ F ++ D   SV  WNAMI  LAIHG   ++ DL  +++R SI+P+ ITF 
Sbjct: 457 CGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFI 516

Query: 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPM 513
           G+L+AC HAG V +G   FE M R + ++P ++HYGCMVD+LGRAG++E A  L+  MPM
Sbjct: 517 GVLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQLVSMMPM 576

Query: 514 EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV 573
           +P+ VIW ++LSA R   N+ +GE  A+ L  +D ++ +S + LSN++A  G W +   V
Sbjct: 577 KPDVVIWGSILSASRAQGNVALGERAAEELAKLDQTHGASKIALSNIYADAGHWTNVSVV 636

Query: 574 RSMMKERNLKKLPGCSWI 591
           R  +++ NL++L G S I
Sbjct: 637 RKELQDANLERLTGRSGI 654



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 104/458 (22%), Positives = 198/458 (43%), Gaps = 78/458 (17%)

Query: 122 ASLVLKACSRLGLIEEGLQIHGLLRKVAF-GSDLFLQNCLISLYVRC-GYLEFARQLFDK 179
           A  ++ +  R   +  G Q+H L  K     S++F++N ++S Y R    L  A QLFD+
Sbjct: 9   APFLVASLKRAARLRCGEQLHALAAKSGLLASNVFVRNSVLSSYSRLPSSLASALQLFDE 68

Query: 180 MG--IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF 237
               +RD+ + NS++    ++G+++ A+ L + MP   R+ +S+ +++  +A+     + 
Sbjct: 69  TPPPLRDATARNSILAALTRAGHLDRAQGLLEEMPRIHRDAVSYTTLVTAFARAGHAAR- 127

Query: 238 AWQIFEKMPERDLISWNSMLHGCV----KCG----------------------------- 264
           A  +F  M   +++   + L G +    +CG                             
Sbjct: 128 AVAVFRSMLSENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDGFVIVATNLVH 187

Query: 265 ------KMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
                 ++  A+ALFD M  R+ V+W  M++GY K   +D+A  +F  +P+RD V+   +
Sbjct: 188 AYAGVLELCSARALFDGMTHRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTL 247

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
           + GY+       A++ +  M  E+  +  +  LV ++ A A+   + +G  +H  + K+ 
Sbjct: 248 IDGYICADLISDAMKAYVQMVGEVGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNG 307

Query: 379 FSLNGKHGVALIDMYSKC-------------------------------GSIENAIKVFE 407
           F         L+  Y  C                               G I  A ++F+
Sbjct: 308 FDALAFVQATLVHFYGCCGLIGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFD 367

Query: 408 QIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKE 467
            + +     W+ MI+G    G  ++A  L   M   SIEP+++T    L+A A +G + +
Sbjct: 368 DMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLNTSIEPNEVTLASALSAIADSGTLDQ 427

Query: 468 GLLCFE-LMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504
           G    + +M R  +L   L     ++D+  + G I  A
Sbjct: 428 GKWIHDYIMNRPVQLTDNLS--SGLIDMYAKCGSIADA 463


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 212/682 (31%), Positives = 332/682 (48%), Gaps = 95/682 (13%)

Query: 21  LRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           LR C   K L     IH R+ + GF  N  L+  L+  + S       E           
Sbjct: 10  LRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELV--------- 60

Query: 78  FREKKDPF---LWNAIIKTYSHGLDPKEALVMF-CLMLDNGVSVDKFSASLVLKACSRLG 133
           F+    P    LWNA++  Y++     EAL +F  L  ++ V  D ++  +VLKAC  LG
Sbjct: 61  FQTNDCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLG 120

Query: 134 LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMID 193
            +  G +IH  L K     D+F+ + L+++Y +C     A +LFD+   RD   +N++I 
Sbjct: 121 RVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVIS 180

Query: 194 GYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQL-------------------- 231
            Y K G  E A + FD M     E N +++  V++   +L                    
Sbjct: 181 CYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILL 240

Query: 232 -------------KSG-LQFAWQIFEKMPERDLISWNSMLHG---------CVKC----- 263
                        K G L+ A ++FEK+P ++ I+WN+M+ G         C++      
Sbjct: 241 DAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMN 300

Query: 264 --------------------------GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
                                     GK      L +++   D+    ++ID Y K G V
Sbjct: 301 DEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDV-DIFIDVSLIDFYFKCGYV 359

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
             A  +F  + K +VV+ N M+ G+V  G  ++AL I+DNM+ E ++ PD  +    LSA
Sbjct: 360 SSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMK-EHHVKPDALTFSSTLSA 418

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
            +QL  +DKG  +H  +   +   N     AL+DMY+KCG ++ A K+F Q+    +  W
Sbjct: 419 CSQLAALDKGRELHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSW 478

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
            +MI     HG    A  L  EM++L++  D +TF  +L+AC+HAGLV EG + F  M  
Sbjct: 479 TSMIFAYGSHGQASEALRLFDEMQKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVV 538

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV-IWRTLLSACRNYENLNVG 536
            + ++P ++HY C++D+LGRAG +  A  +++      +D+ +  TL SAC  + N  +G
Sbjct: 539 QYDIKPGIEHYSCLIDLLGRAGRLHEAYEILQRSKETRSDIGLLSTLFSACLLHNNFVLG 598

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
             + K LI +D  + S+Y+LLSNM+A +  W++ R+VR  MKE  LKK PGCSWIE+   
Sbjct: 599 IQIGKMLIEVDPDDPSTYILLSNMYASVNKWDEVRKVRRKMKELGLKKSPGCSWIEINQR 658

Query: 597 VHEFFVRDKSRLQVRDIYYMLD 618
           +H FF  DKS      +Y  L+
Sbjct: 659 IHPFFAEDKSNPLADGVYECLN 680


>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
          Length = 1135

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 184/611 (30%), Positives = 309/611 (50%), Gaps = 73/611 (11%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +K+   W +++  Y+    P+ AL MF  M+++GV+ + F+ +  L AC+ LG +  G Q
Sbjct: 76  RKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQ 135

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H L  +  F  D ++ +CLI +Y RCG L  A+++FD+M   D V Y S+I  + ++G 
Sbjct: 136 VHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGE 195

Query: 201 IESARE-----------------------------------LFDSMPIRERNLISWNSVL 225
            E A E                                   L   + +R +++ S  +++
Sbjct: 196 FELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTALI 255

Query: 226 NGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM------P-- 277
           + Y++     + A  +F+ +  ++++SW SM+   ++ G++++A  +F  M      P  
Sbjct: 256 DFYSR-NGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNE 314

Query: 278 ------------------------KRDVVSWANMIDG----YAKLGRVDIARRLFDEMPK 309
                                   K D+++   + +     Y + G V+    + +++  
Sbjct: 315 FALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIEN 374

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
            D+V+    +    +NG+  KA+ +   M  E +  P+  +   VLS+ A +  +D+G+ 
Sbjct: 375 PDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFT-PNGYAFSSVLSSCADVASLDQGMQ 433

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
            H    K         G ALI+MYSKCG + +A   F+ +    V  WN++I+G A HG 
Sbjct: 434 FHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGD 493

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
              A ++  +M    I+PDD TF G+L  C H+G+V+EG L F LM   +   P   HY 
Sbjct: 494 ANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYA 553

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549
           CM+D+LGR G  + A  +I DMP EP+ +IW+TLL++C+ + NL++G+  A  L+ +   
Sbjct: 554 CMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDR 613

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQ 609
           +S+SYVL+SN++A  G W DAR+VR  M E  +KK  GCSWIE+   VH F  RD S   
Sbjct: 614 DSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINNEVHTFASRDMSHPN 673

Query: 610 VRDIYYMLDNM 620
              IY ML  +
Sbjct: 674 SDSIYQMLGEL 684



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 111/425 (26%), Positives = 194/425 (45%), Gaps = 60/425 (14%)

Query: 31  NQIHARMITTGFIKNTHL--TTKLVASFSSSPCTPLTEF--ARYIFFKYHAFREKKDPFL 86
            QIH  +I    +++  +  +T L+  +S +      EF  A+ +F   H     K+   
Sbjct: 231 QQIHGYLIKKIGLRSQSVYSSTALIDFYSRN-----GEFKLAKAVFDSLHC----KNVVS 281

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           W ++++ Y      +EAL +F  M+  GV  ++F+ S+VL AC  +GL   G Q+H    
Sbjct: 282 WCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGL---GRQLHCSAI 338

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           K    +D+ + N L+S+Y R G +E    + +K+   D VS+ + I    ++G  E A  
Sbjct: 339 KHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIA 398

Query: 207 LFDSMPIR--ERNLISWNSVLNG---YAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
           L   M       N  +++SVL+     A L  G+QF     +   + ++ + N++++   
Sbjct: 399 LLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYS 458

Query: 262 KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
           KCG+M  A+  FD M   DV SW ++I G+A+ G  +                       
Sbjct: 459 KCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDAN----------------------- 495

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
                   KALE+F  M+    + PDD++ + VL      G +++G    R L  DQ+S 
Sbjct: 496 --------KALEVFSKMRSN-GIKPDDSTFLGVLMGCNHSGMVEEGELFFR-LMIDQYSF 545

Query: 382 N--GKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIH---GLGELAFD 435
                H   +IDM  + G  + A+++   +  +     W  ++    +H    +G+LA D
Sbjct: 546 TPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAAD 605

Query: 436 LLMEM 440
            LME+
Sbjct: 606 RLMEL 610



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 128/246 (52%), Gaps = 7/246 (2%)

Query: 280 DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQ 339
           DVV     ++   K GR+  A  LFD MP+++VVA  ++M GY RNG    AL +F +M 
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADM- 105

Query: 340 CELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSI 399
            E  + P+D +    L A A LG +  G  +H    +  F+ +   G  LI+MYS+CGS+
Sbjct: 106 VESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSL 165

Query: 400 ENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
             A +VF++++   V  + ++I+    +G  ELA + L++M +  ++P++ T T +L AC
Sbjct: 166 PAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC 225

Query: 460 AHA-GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
               G    G     L+++I      +     ++D   R G  + A+ + + +  + N V
Sbjct: 226 PRVLGQQIHGY----LIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCK-NVV 280

Query: 519 IWRTLL 524
            W +++
Sbjct: 281 SWCSMM 286



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 102/413 (24%), Positives = 181/413 (43%), Gaps = 63/413 (15%)

Query: 149 AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELF 208
           A   D+ L+   ++  V+ G L  A  LFD+M  ++ V++ S++ GY ++G  E+A  +F
Sbjct: 43  AESPDVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMF 102

Query: 209 DSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV----- 261
             M       N  + N+ L   A L  G   A +    +  R   + ++ +  C+     
Sbjct: 103 ADMVESGVAPNDFACNAALVACADL--GALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYS 160

Query: 262 KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
           +CG +  A+ +FD+M   DVV + ++I  + + G  ++A     +M K+           
Sbjct: 161 RCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQG---------- 210

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
                                 L P++ ++  +L+A  ++     G  IH YL K +  L
Sbjct: 211 ----------------------LKPNEHTMTTILTACPRV----LGQQIHGYLIK-KIGL 243

Query: 382 NGK---HGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
             +      ALID YS+ G  + A  VF+ +   +V  W +M+      G  E A  +  
Sbjct: 244 RSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFG 303

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
           +M    ++P++   + +L AC   GL ++ L C  +    H L  +++    ++ + GR 
Sbjct: 304 DMISEGVDPNEFALSIVLGACGSIGLGRQ-LHCSAIK---HDLITDIRVSNALLSMYGRT 359

Query: 499 G---HIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
           G    +EA  N IE+    P+ V W T +SA  N++N   GE     L  M S
Sbjct: 360 GLVEELEAMLNKIEN----PDLVSWTTAISA--NFQN-GFGEKAIALLCQMHS 405



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 128/296 (43%), Gaps = 44/296 (14%)

Query: 19  LLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAF 78
           ++L  C ++    Q+H   I    I +  ++  L++ +     T L E    +  K    
Sbjct: 319 IVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGR---TGLVEELEAMLNKI--- 372

Query: 79  REKKDPFLWN-AIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
            E  D   W  AI   + +G   K A+ + C M   G + + ++ S VL +C+ +  +++
Sbjct: 373 -ENPDLVSWTTAISANFQNGFGEK-AIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQ 430

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G+Q H L  K+   S++   N LI++Y +CG +  AR  FD M   D  S+NS+I G+ +
Sbjct: 431 GMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQ 490

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
            G+   A E+F  M  R   +   +S   G                            +L
Sbjct: 491 HGDANKALEVFSKM--RSNGIKPDDSTFLG----------------------------VL 520

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVVS-----WANMIDGYAKLGRVDIARRLFDEMP 308
            GC   G +++ +  F  M  +   +     +A MID   + GR D A R+ ++MP
Sbjct: 521 MGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMP 576


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 187/512 (36%), Positives = 294/512 (57%), Gaps = 17/512 (3%)

Query: 113 NGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF 172
           N  S+       ++    R   I + L IH  L +     D F+   L+    +C  +++
Sbjct: 40  NPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDY 99

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK 232
           A ++F      +   Y ++IDG+V SGN   A +L+  M     +++  N ++    +  
Sbjct: 100 ASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRM--LHESILPDNYLMASILK-A 156

Query: 233 SGLQFAWQIFEKMPERDL---ISWNSM-------LHGCVKCGKMDDAQALFDKMPKRDVV 282
            G Q A +   ++  R L    S N +       L+G  KCG++ DA+ +F++MP+ DVV
Sbjct: 157 CGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYG--KCGELGDARRVFEEMPE-DVV 213

Query: 283 SWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
           +   MI  Y+  G V+ A  +F  + ++D V   AM+ G+VRN  + +ALE F  MQ E 
Sbjct: 214 ASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGE- 272

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENA 402
            + P++ ++V VLSA +QLG ++ G  +H Y+ K +  LN   G ALI+MYS+CGSI+ A
Sbjct: 273 NVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEA 332

Query: 403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
             VF++++D  V  +N MI+GL+++G    A +L   M    + P ++TF G+LNAC+H 
Sbjct: 333 QTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHG 392

Query: 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRT 522
           GLV  G   F  M R +++EP+++HYGCMVD+LGR G +E A +LI  M M P+ ++  T
Sbjct: 393 GLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGT 452

Query: 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
           LLSAC+ ++NL +GE VAK L     ++S +YVLLS+++A  G W +A +VR+ MKE  +
Sbjct: 453 LLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGM 512

Query: 583 KKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           +K PGCS IE+   +HEF + D    Q   IY
Sbjct: 513 QKEPGCSSIEVNNEIHEFLLGDLRHPQKERIY 544



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 117/448 (26%), Positives = 211/448 (47%), Gaps = 53/448 (11%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LL++ + +N V  IHA++I  G  ++  +  +L+ S   S C  + ++A  IF   H   
Sbjct: 55  LLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRS--CSKCHAI-DYASRIFQYTH--- 108

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
              + +L+ A+I  +    +  EA+ ++  ML   +  D +  + +LKAC     + EG 
Sbjct: 109 -NPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGR 167

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           ++H    K+ F S+  ++  ++ LY +CG L  AR++F++M   D V+   MI  Y   G
Sbjct: 168 EVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMP-EDVVASTVMISSYSDQG 226

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----ISWNS 255
            +E A  +F    +R ++ + W ++++G+ +       A + F  M   ++     +   
Sbjct: 227 LVEEAGAVFSR--VRRKDTVCWTAMIDGFVR-NEETNRALEAFRGMQGENVRPNEFTIVC 283

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDV----VSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           +L  C + G ++  + +   M K ++         +I+ Y++ G +D A+ +FDEM  RD
Sbjct: 284 VLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRD 343

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           V+  N M+ G   NG S +A+E+F  M     L P + + V VL+A +  G +D G  I 
Sbjct: 344 VITYNTMISGLSMNGKSRQAIELFRVM-VGRRLRPTNVTFVGVLNACSHGGLVDFGFEIF 402

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
             + +D                          +V  QIE     H+  M++ L   G  E
Sbjct: 403 HSMARD-------------------------YRVEPQIE-----HYGCMVDLLGRVGRLE 432

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNAC 459
            A+DL+  M+   + PD I    LL+AC
Sbjct: 433 EAYDLIRTMK---MTPDHIMLGTLLSAC 457


>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
 gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
          Length = 702

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 168/450 (37%), Positives = 268/450 (59%), Gaps = 4/450 (0%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN 217
           N +IS YV+   ++ A +LF++M  RDSVS+ +MI+GYV+ G ++ AREL + MP R  N
Sbjct: 230 NAMISAYVQRCEIDEASRLFEEMPERDSVSWTTMINGYVRIGKLDEARELLNEMPYR--N 287

Query: 218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP 277
           + +  ++++GY Q    +  A + F+++   D++ WN+M+ G    G++++A  L  +M 
Sbjct: 288 IGAQTAMISGYIQCNK-VDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMV 346

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
            +D+V+W  MI  YA++G++D A ++F+EM +RD+V+ N+++ G++ NG ++ AL+ F  
Sbjct: 347 NKDMVTWNTMISCYAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFAL 406

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
           M  E    PD  S    LS+ A +  +  G  +H+ + K  +        ALI MY+KCG
Sbjct: 407 MGHEGK-KPDQLSFACGLSSCATIAALQVGNQLHQVVVKGGYLNYLVVNNALITMYAKCG 465

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            I  A  VF  I    V  WN++I G AI+G G+ A  L  EM    + PD++TF G+L+
Sbjct: 466 RILEAGLVFNGICHADVISWNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIGILS 525

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
           AC HAG+V  GL  F+ M +++ +EP  +HY CMVD+LGR G ++ A  ++  M ++   
Sbjct: 526 ACNHAGMVDHGLKLFKCMSKVYAIEPLAEHYACMVDLLGRVGRLDEAFEIVRGMKVKATA 585

Query: 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
            +W  LL ACR + NL +G   A  L   +   +S+YVLLSN+ A    WN+ + VR +M
Sbjct: 586 GVWGALLGACRAHGNLELGRLAAHKLSEFEPHKTSNYVLLSNIHAEANRWNEVQEVRMLM 645

Query: 578 KERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
              +  K PGCSW+E+   VH F   D +R
Sbjct: 646 NASSTVKEPGCSWVEVRNQVHGFLSDDSTR 675



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 181/384 (47%), Gaps = 83/384 (21%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV--------------------- 196
           N +IS+Y + G +  AR LFDKM  R+ VS+N+M+ GY+                     
Sbjct: 10  NSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVIMPRRDLF 69

Query: 197 ----------KSGNIESARELFDSMPIRER------------------------------ 216
                     ++G +E ARELFDS+P   R                              
Sbjct: 70  SWTLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAMISGYVKKGRVNEAKRLFDEMP 129

Query: 217 --NLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQA 271
             NLISWNS+L GY Q   ++ GL+F    F +M ERD++SWN M+ G ++ G +D A  
Sbjct: 130 VKNLISWNSMLAGYTQNRKMRLGLEF----FNEMDERDVVSWNLMVDGFIQVGDLDSAWK 185

Query: 272 LFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKA 331
            F +  K +VVSW  M+ G+A+ G +  +RRLFD+MP R++V+ NAM+  YV+     +A
Sbjct: 186 FFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRCEIDEA 245

Query: 332 LEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALID 391
             +F+ M        D  S   +++   ++G +D+     R L  +    N     A+I 
Sbjct: 246 SRLFEEMP-----ERDSVSWTTMINGYVRIGKLDEA----RELLNEMPYRNIGAQTAMIS 296

Query: 392 MYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDIT 451
            Y +C  ++ A + F++I    V  WNAMI G A HG    A  L   M    +  D +T
Sbjct: 297 GYIQCNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRM----VNKDMVT 352

Query: 452 FTGLLNACAHAGLVKEGLLCFELM 475
           +  +++  A  G +   +  FE M
Sbjct: 353 WNTMISCYAQVGQMDRAVKIFEEM 376



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 124/455 (27%), Positives = 226/455 (49%), Gaps = 38/455 (8%)

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFA 238
           M  +++V+YNSMI  Y K+G I +AR LFD MP   RNL+SWN++++GY  L +G    A
Sbjct: 1   MAEKNTVTYNSMISVYAKNGRINAARNLFDKMP--RRNLVSWNTMVSGY--LHNGKFDEA 56

Query: 239 WQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP---KRDVVSWANMIDGYAKLG 295
           +++F  MP RDL SW  M+    + G+++ A+ LFD +P   ++ V  W  MI GY K G
Sbjct: 57  YKLFVIMPRRDLFSWTLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAMISGYVKKG 116

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
           RV+ A+RLFDEMP +++++ N+M+ GY +N      LE F+ M        D  S  +++
Sbjct: 117 RVNEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMD-----ERDVVSWNLMV 171

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
               Q+G +D      +  +K     N    V ++  +++ G+I  + ++F+Q+   ++ 
Sbjct: 172 DGFIQVGDLDSAWKFFQETQKP----NVVSWVTMLSGFARNGNILESRRLFDQMPSRNIV 227

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            WNAMI+        + A  L  EM     E D +++T ++N     G + E     EL+
Sbjct: 228 SWNAMISAYVQRCEIDEASRLFEEMP----ERDSVSWTTMINGYVRIGKLDEAR---ELL 280

Query: 476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNV 535
             +       Q    M+    +   ++ AR   +++    + V W  +++   ++  +N 
Sbjct: 281 NEMPYRNIGAQT--AMISGYIQCNKVDEARRFFDEIGTW-DVVCWNAMIAGYAHHGRINE 337

Query: 536 GEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG 595
              ++K ++  D    ++ +   + +A +G  + A ++   M ER+L      SW  L  
Sbjct: 338 ALCLSKRMVNKDMVTWNTMI---SCYAQVGQMDRAVKIFEEMGERDL-----VSWNSL-- 387

Query: 596 VVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVATSC 630
            +  F +  ++   ++    M      PD ++ +C
Sbjct: 388 -IAGFMLNGQNLDALKSFALMGHEGKKPDQLSFAC 421


>gi|21952815|dbj|BAC06231.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|125572862|gb|EAZ14377.1| hypothetical protein OsJ_04297 [Oryza sativa Japonica Group]
 gi|215697551|dbj|BAG91545.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 548

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 179/532 (33%), Positives = 297/532 (55%), Gaps = 22/532 (4%)

Query: 79  REKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
           R  +DP +W  + K Y+     +EA +++  +L +          L+    SR   +  G
Sbjct: 16  RGCRDPDMWANLAKVYASNSFLREAAIIYSKLLPHRTHHLPLVIVLLKATASRADPVL-G 74

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
             +H    K A   D  +   L+S+Y +CG L  AR++FD M  R++V+ N+M+ GY  +
Sbjct: 75  RALHAEAVKSANAHDRLVGTTLVSVYCKCGLLADARRVFDGMLDRNAVTCNAMLAGYAAA 134

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP--ERDLISWNSM 256
           G++ SA  LF  M    R  ++W +++ G+A  K  +    + FE MP   +++++W   
Sbjct: 135 GDMVSAEALFAGMG--SRTPVTWATLIRGFAG-KGDMAETRRWFEAMPLGMQNVVTWTVA 191

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
           +   V  G M+ A+ LF+KMP R+   W++M+ G  K G  D A+ +FD++P R++V  N
Sbjct: 192 VQAYVAAGDMETARELFNKMPARNAFVWSSMVTGNFKAGNADEAQAVFDKIPVRNLVNWN 251

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL-- 374
           A++ GY + G   KALE F +M  +  + PD+ ++  VLSA AQLG +++   +H ++  
Sbjct: 252 ALIAGYAKMGCCEKALEAFHSMLKD-KIKPDEFTMAGVLSACAQLGSLEQARKVHNFIIQ 310

Query: 375 ---EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
               K+QF +NG     L+DM++KCG +  A  +F+ ++  + + WN+MI+ L+ HG   
Sbjct: 311 HRIRKNQFVMNG-----LVDMFAKCGDLAFARNIFDNMQWRNTECWNSMISALSSHGQSI 365

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            A  L  +ME    +P++IT   +L AC H G V EGL  F     I+ +   ++HYGC+
Sbjct: 366 EAIRLFSKMECSEQKPNEITLLAVLGACTHGGFVDEGLRIFSKF-DIYGVAAAVEHYGCL 424

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD---- 547
           VD+LGR+G +  A  ++++M +EPN+VIW +LL ACR + +  + E V+  +  +     
Sbjct: 425 VDLLGRSGRLREAYEIVKNMLVEPNEVIWGSLLGACRVHGDAEMSELVSSEIHQLHSRRV 484

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHE 599
           S+N + Y+LLSN+ A    W  A R+R  M    + K PGCS +ELE   H+
Sbjct: 485 STNDAEYILLSNIMASSERWEQAERMRRKMALHGVGKTPGCSSVELEITEHQ 536


>gi|414886078|tpg|DAA62092.1| TPA: hypothetical protein ZEAMMB73_488923 [Zea mays]
          Length = 714

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 188/558 (33%), Positives = 296/558 (53%), Gaps = 52/558 (9%)

Query: 79  REKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
           R  +D   +  ++ +++       A+ +F  ML   V  ++ + +  + A +R G     
Sbjct: 104 RIHRDAVSYTTLVTSFARAGHAARAVAVFRSMLSENVVPNEATLAGAITAFARCGAPATV 163

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF--ARQLFDKMGIRDSVSYNSMIDGYV 196
             IHG   + A    + +   L+  Y   G LE   AR LFD M  R++V++N M++GYV
Sbjct: 164 GMIHGFALQRALDGFVIVATNLVHAYA--GVLELCSARALFDGMTYRNTVTWNVMLNGYV 221

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGY---------------------------- 228
           K+  I+ A E+F  +P  ER+ +SW ++++GY                            
Sbjct: 222 KAKMIDMAAEVFWRIP--ERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDYEVL 279

Query: 229 -----------AQLKSGLQFAWQIFEKMPERDLISWNSMLH--GCVKCGKMDDAQALFDK 275
                      + +  G Q    I +   +       +++H  GC  CG +  AQ  F  
Sbjct: 280 LVDLMKACARYSAVTEGQQLHTVILKNGFDAHAFVQATLVHFYGC--CGLIGLAQMTFRL 337

Query: 276 MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
             K    SW  ++    + G +  AR LFD+MP+RD V+ + M+ GYV+ G S  AL++F
Sbjct: 338 SDKSHTASWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLF 397

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
            +M     + P++ +L   LSAIA  G +D+G  IH Y+      L       LIDMY+K
Sbjct: 398 YSM-LNTSIEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTDNLSSGLIDMYAK 456

Query: 396 CGSIENAIKVFEQIED--GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
           CGSI +A++ F ++ D   SV  WNAMI  LAIHG   ++ DL  +++R SI+P+ ITF 
Sbjct: 457 CGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFI 516

Query: 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPM 513
           G+L+AC HAG V +G   FE M R + ++P ++HYGCMVD+LGRAG++E A  L+  MPM
Sbjct: 517 GVLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQLVSMMPM 576

Query: 514 EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV 573
           +P+ VIW ++LSA R   N+ +GE  A+ L  +D ++ +S + LSN++A  G W +   V
Sbjct: 577 KPDVVIWGSILSASRAQGNVALGERAAEELAKLDQTHGASKIALSNIYADAGHWINVSVV 636

Query: 574 RSMMKERNLKKLPGCSWI 591
           R  +++ NL++L G S I
Sbjct: 637 RKELQDANLERLTGRSGI 654



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/458 (22%), Positives = 198/458 (43%), Gaps = 78/458 (17%)

Query: 122 ASLVLKACSRLGLIEEGLQIHGLLRKVAF-GSDLFLQNCLISLYVRC-GYLEFARQLFDK 179
           A  ++ +  R   +  G Q+H L  K     S++F++N ++S Y R    L  A QLFD+
Sbjct: 9   APFLVASLKRAARLRCGEQLHALAAKSGLLASNVFVRNSVLSSYSRLPSSLASALQLFDE 68

Query: 180 MG--IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF 237
               +RD+ + NS++    ++G ++ A+ L + MP   R+ +S+ +++  +A+     + 
Sbjct: 69  TPPPLRDATARNSVLAALTRAGYLDRAQGLLEEMPRIHRDAVSYTTLVTSFARAGHAAR- 127

Query: 238 AWQIFEKMPERDLISWNSMLHGCV----KCG----------------------------- 264
           A  +F  M   +++   + L G +    +CG                             
Sbjct: 128 AVAVFRSMLSENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDGFVIVATNLVH 187

Query: 265 ------KMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
                 ++  A+ALFD M  R+ V+W  M++GY K   +D+A  +F  +P+RD V+   +
Sbjct: 188 AYAGVLELCSARALFDGMTYRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTL 247

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
           + GY+       A++ +  M  E+  +  +  LV ++ A A+   + +G  +H  + K+ 
Sbjct: 248 IDGYICADLISDAMKAYVQMVGEVGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNG 307

Query: 379 FSLNGKHGVALIDMYSKC-------------------------------GSIENAIKVFE 407
           F  +      L+  Y  C                               G I  A ++F+
Sbjct: 308 FDAHAFVQATLVHFYGCCGLIGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFD 367

Query: 408 QIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKE 467
            + +     W+ MI+G    G  ++A  L   M   SIEP+++T    L+A A +G + +
Sbjct: 368 DMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLNTSIEPNEVTLASALSAIADSGTLDQ 427

Query: 468 GLLCFE-LMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504
           G    + +M R  +L   L     ++D+  + G I  A
Sbjct: 428 GKWIHDYIMNRPVQLTDNLS--SGLIDMYAKCGSIADA 463


>gi|357114699|ref|XP_003559133.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 640

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 175/499 (35%), Positives = 268/499 (53%), Gaps = 38/499 (7%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN 217
            C++  Y R G +  AR+LFD M  R  VS+ +M+ GY ++G    ARE+FD MP  ERN
Sbjct: 135 TCMVDAYCRAGRVSEARELFDAMPERSVVSWTAMMHGYARAGMPREAREMFDRMP--ERN 192

Query: 218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP 277
           ++SW  ++  YA      Q A  +F++MP+R+  SWN+++ G  + G++D+A  LF++MP
Sbjct: 193 VVSWTVMVKAYAD-GGYFQDAMGLFDRMPQRNSYSWNAVISGSFRAGRVDEAVRLFERMP 251

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
            R+VVSW  M+ G A+ GRV +AR  FD MP +D+ A NAM+  Y  NG   +A  +FD+
Sbjct: 252 HRNVVSWTAMVTGLAQNGRVSMAREFFDVMPCKDITAWNAMITAYANNGEMNEARRLFDS 311

Query: 338 MQCE-----------------------LYL-------HPDDASLVIVLSAIAQLGHIDKG 367
           M  +                       L+L        P+  +L+ VL     +  +   
Sbjct: 312 MPAKDLVSWNTVIDGYAKKELKDEASGLFLDMLRSAASPNSTTLISVLVISESMVEV--- 368

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
           V IH              G AL+ MYS+ G + +A   F+++E+     W +MI   A H
Sbjct: 369 VQIHGLATTLGLLSETSLGNALLTMYSRIGDLPSAWLAFKRLEEKDAITWTSMIQAFANH 428

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           G    A     +M      P   TFT +L+AC+HAGLV+EG   F  +R ++ LE  ++H
Sbjct: 429 GHASYALQAFAQMLEHGKNPSSTTFTAVLSACSHAGLVEEGKSVFRSIRHVYGLERTIEH 488

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           Y C++DILGRAG++  A +++  MP +  +D I RTLL AC  ++ ++    V + L   
Sbjct: 489 YTCLIDILGRAGNMREAMDVVNAMPPDICDDAILRTLLGACMMHKEVDAAREVGEVLAKS 548

Query: 547 DSSNSSS-YVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDK 605
           D S S   Y++L+N+ A  G+W++   V   MK  N++K PG S I ++   H FF RD+
Sbjct: 549 DPSGSGGYYMVLANVLASGGLWDEMADVWKAMKGSNVRKTPGVSQITVDARNHAFFSRDQ 608

Query: 606 SRLQVRDIYYMLDNMWTPD 624
              Q  +IY MLD+   P+
Sbjct: 609 IHPQCAEIYEMLDHTLVPE 627



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 134/285 (47%), Gaps = 35/285 (12%)

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLH 258
           ++  A  L+ + P   R       +L GYA  K+G +  A ++F+ M  R +++W  M+ 
Sbjct: 82  DLPRAEALYRAAPEAARGPALDAVMLAGYA--KAGRVHRARRLFDGMLTRGVVAWTCMVD 139

Query: 259 GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
              + G++ +A+ LFD MP+R VVSW  M+ GYA+ G    AR +FD MP+R+VV+   M
Sbjct: 140 AYCRAGRVSEARELFDAMPERSVVSWTAMMHGYARAGMPREAREMFDRMPERNVVSWTVM 199

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI-----HRY 373
           +  Y   GY   A+ +FD M        +  S   V+S   + G +D+ V +     HR 
Sbjct: 200 VKAYADGGYFQDAMGLFDRMP-----QRNSYSWNAVISGSFRAGRVDEAVRLFERMPHRN 254

Query: 374 LEK-----DQFSLNGKHGV-----------------ALIDMYSKCGSIENAIKVFEQIED 411
           +          + NG+  +                 A+I  Y+  G +  A ++F+ +  
Sbjct: 255 VVSWTAMVTGLAQNGRVSMAREFFDVMPCKDITAWNAMITAYANNGEMNEARRLFDSMPA 314

Query: 412 GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLL 456
             +  WN +I+G A   L + A  L ++M R +  P+  T   +L
Sbjct: 315 KDLVSWNTVIDGYAKKELKDEASGLFLDMLRSAASPNSTTLISVL 359



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 144/353 (40%), Gaps = 74/353 (20%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ------ 140
           W  ++K Y+ G   ++A+ +F    D     + +S + V+    R G ++E ++      
Sbjct: 196 WTVMVKAYADGGYFQDAMGLF----DRMPQRNSYSWNAVISGSFRAGRVDEAVRLFERMP 251

Query: 141 ----------IHGLLR--KVAFGSDLF---------LQNCLISLYVRCGYLEFARQLFDK 179
                     + GL +  +V+   + F           N +I+ Y   G +  AR+LFD 
Sbjct: 252 HRNVVSWTAMVTGLAQNGRVSMAREFFDVMPCKDITAWNAMITAYANNGEMNEARRLFDS 311

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNS-VLNGYAQLKSGLQFA 238
           M  +D VS+N++IDGY K    + A  LF  M    R+  S NS  L     +   +   
Sbjct: 312 MPAKDLVSWNTVIDGYAKKELKDEASGLFLDM---LRSAASPNSTTLISVLVISESMVEV 368

Query: 239 WQIFEKMPERDLIS----WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKL 294
            QI        L+S     N++L    + G +  A   F ++ ++D ++W +MI  +A  
Sbjct: 369 VQIHGLATTLGLLSETSLGNALLTMYSRIGDLPSAWLAFKRLEEKDAITWTSMIQAFANH 428

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
           G    A + F +M                        LE   N        P   +   V
Sbjct: 429 GHASYALQAFAQM------------------------LEHGKN--------PSSTTFTAV 456

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNG--KHGVALIDMYSKCGSIENAIKV 405
           LSA +  G +++G ++ R + +  + L    +H   LID+  + G++  A+ V
Sbjct: 457 LSACSHAGLVEEGKSVFRSI-RHVYGLERTIEHYTCLIDILGRAGNMREAMDV 508



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 100/203 (49%), Gaps = 14/203 (6%)

Query: 9   QPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFA 68
            P ++T  ++L++   +++ +V QIH    T G +  T L   L+  +S     P    +
Sbjct: 349 SPNSTTLISVLVI--SESMVEVVQIHGLATTLGLLSETSLGNALLTMYSRIGDLP----S 402

Query: 69  RYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA 128
            ++ FK     E+KD   W ++I+ +++      AL  F  ML++G +    + + VL A
Sbjct: 403 AWLAFKR---LEEKDAITWTSMIQAFANHGHASYALQAFAQMLEHGKNPSSTTFTAVLSA 459

Query: 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFLQN--CLISLYVRCGYLEFARQLFDKM--GIRD 184
           CS  GL+EEG  +   +R V +G +  +++  CLI +  R G +  A  + + M   I D
Sbjct: 460 CSHAGLVEEGKSVFRSIRHV-YGLERTIEHYTCLIDILGRAGNMREAMDVVNAMPPDICD 518

Query: 185 SVSYNSMIDGYVKSGNIESAREL 207
                +++   +    +++ARE+
Sbjct: 519 DAILRTLLGACMMHKEVDAAREV 541


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 194/635 (30%), Positives = 316/635 (49%), Gaps = 87/635 (13%)

Query: 67  FARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVL 126
            AR +F +  A     D   +NA+I+ YS       A+ ++  ML   V  +K++   VL
Sbjct: 51  LARQVFDRIPA----PDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 127 KACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSV 186
           KACS L  +  G  IH     V   +DLF+   LI LY+RC     A  +F KM +RD V
Sbjct: 107 KACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVV 166

Query: 187 SYNSMIDGYVKSGNIE-----------------SARELFDSMPI---------------- 213
           ++N+M+ GY   G                    +A  L   +P+                
Sbjct: 167 AWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAY 226

Query: 214 --------RERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGK 265
                    E  ++   ++L+ YA+ K  L +A ++F  M  R+ ++W++++ G V C +
Sbjct: 227 CLRAYLDQNEEQVLIGTALLDMYAKCKH-LVYACRVFHGMTVRNEVTWSALIGGFVLCDR 285

Query: 266 MDDAQALFDKM----------------------------------------PKRDVVSWA 285
           M +A  LF  M                                           D+ +  
Sbjct: 286 MTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGN 345

Query: 286 NMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLH 345
           +++  YAK G ++ A  LFDE+  +D ++  A++ GYV+NG + +A  +F  MQ    + 
Sbjct: 346 SLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQ-ACNVQ 404

Query: 346 PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKV 405
           PD A++V ++ A + L  +  G   H  +     +L      +LIDMY+KCG I+ + +V
Sbjct: 405 PDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQV 464

Query: 406 FEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLV 465
           F+++    +  WN MI G  IHGLG+ A  L + M+    EPDD+TF  L+ AC+H+GLV
Sbjct: 465 FDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLV 524

Query: 466 KEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLS 525
            EG   F+ M   + + P ++HY CMVD+L R G ++ A   I+ MP++ +  +W  LL 
Sbjct: 525 TEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLG 584

Query: 526 ACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKL 585
           ACR ++N+++G+ V++ +  +    + ++VLLSN+F+  G +++A  VR + K +  KK 
Sbjct: 585 ACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKS 644

Query: 586 PGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           PGCSWIE+ G +H F   D+S     DIY+ LDN+
Sbjct: 645 PGCSWIEINGSLHAFVGGDQSHPCSPDIYHELDNI 679



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 115/523 (21%), Positives = 202/523 (38%), Gaps = 103/523 (19%)

Query: 168 GYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM-----PIRERNLISWN 222
           G L  ARQ+FD++   D+ +YN++I  Y   G   +A +L+ SM     P  +       
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 223 SVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV 282
              +  A L +G              DL    +++   ++C +   A  +F KMP RDVV
Sbjct: 107 KACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVV 166

Query: 283 SWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
           +W                               NAM+ GY  +G    A+    +MQ   
Sbjct: 167 AW-------------------------------NAMLAGYANHGMYHHAIAHLLDMQDRG 195

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH---GVALIDMYSKCGSI 399
            L P+ ++LV +L  +AQ G + +G ++H Y  +     N +    G AL+DMY+KC  +
Sbjct: 196 GLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHL 255

Query: 400 ENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM------------------- 440
             A +VF  +   +   W+A+I G  +      AF+L  +M                   
Sbjct: 256 VYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRV 315

Query: 441 -----------------ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
                             +  I  D      LL+  A AGL+ E  + F+ +     +  
Sbjct: 316 CASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTIS- 374

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMP---MEPNDVIWRTLLSACRNYENLNVGE--- 537
               YG ++    + G  E A  + + M    ++P+     +L+ AC +   L  G    
Sbjct: 375 ----YGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSH 430

Query: 538 -PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
             V    + +++S  +S +   +M+A  G  + +R+V   M  R++      SW     +
Sbjct: 431 GSVIIRGLALETSICNSLI---DMYAKCGRIDLSRQVFDKMPARDI-----VSW---NTM 479

Query: 597 VHEFFVRDKSRLQVRDIYYMLDNMWTPDSVA-----TSCTHYG 634
           +  + +    +        M +  + PD V       +C+H G
Sbjct: 480 IAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSG 522



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 116/251 (46%), Gaps = 9/251 (3%)

Query: 279 RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM 338
           +D   W   ++ +   G++ +AR++FD +P  D  A NA++  Y   G    A++++ +M
Sbjct: 31  KDNKEWQQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSM 90

Query: 339 QCELYLH--PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC 396
              LY    P+  +   VL A + L  +  G  IH +        +     ALID+Y +C
Sbjct: 91  ---LYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRC 147

Query: 397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEME-RLSIEPDDITFTGL 455
                A  VF ++    V  WNAM+ G A HG+   A   L++M+ R  + P+  T   L
Sbjct: 148 ARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSL 207

Query: 456 LNACAHAGLVKEG--LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPM 513
           L   A  G + +G  +  + L   + + E ++     ++D+  +  H+  A  +   M +
Sbjct: 208 LPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTV 267

Query: 514 EPNDVIWRTLL 524
             N+V W  L+
Sbjct: 268 R-NEVTWSALI 277


>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 534

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 167/479 (34%), Positives = 283/479 (59%), Gaps = 11/479 (2%)

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           E  +IH  +         F+   ++ L  + G +++A +LF+++   +   YNS+I  Y 
Sbjct: 25  EWKKIHACIIVHGLSQSSFMVTKMVDLCDKLGDMDYATRLFNQVSNPNVFLYNSIIRAYT 84

Query: 197 KSGNIESARELFDSM---PIRERNLISWNSVLNGYAQLKS---GLQFAWQIFEKMPERDL 250
            +        ++  +    I   +  ++  +    A L S   G Q    +++  P   +
Sbjct: 85  HNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQVHGHLYKFGPRFHV 144

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
           ++ N+++   +K   + DA  +FD+M +RDV+SW +++ GYA+LG++  A+ LF  M  +
Sbjct: 145 VTENALIDMYMKFDDLVDAHKVFDEMSERDVISWNSLLSGYARLGQMKKAKGLFHLMIDK 204

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
            +V+  AM+ GY   G  ++A++ F  MQ    + PD+ SL+ VL + A LG ++ G  I
Sbjct: 205 TIVSWTAMISGYTGIGCYVEAMDFFREMQLA-GIEPDEISLISVLPSCAHLGSLELGKWI 263

Query: 371 HRYLEKDQFSLNGKHGV--ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
           H Y E+    L  + GV  ALI+MYSKCG +  AI++FEQ +   V  W+ MI+G A HG
Sbjct: 264 HMYAERR--GLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHG 321

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
               AF+  +EM+R  ++P+ ITF GLL+AC+H GL ++GL  F++MR+ +++EP+++HY
Sbjct: 322 NAHRAFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQQGLKYFDMMRQDYQIEPKIEHY 381

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
           GC++D+L RAG +E A  + + MP++P+  IW +LLS+CR   NL+V      HL+ ++ 
Sbjct: 382 GCLIDVLARAGKLERAVEITKTMPVKPDSKIWGSLLSSCRTKGNLDVALVAMDHLVEVEP 441

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
            +  +YVLL+N++A LG W D  R+R ++++ N+KK PGCS IE+  +V EF   D S+
Sbjct: 442 DDMGNYVLLANIYADLGKWEDVSRLRKIIRKENMKKTPGCSLIEVNNIVQEFVAGDNSK 500



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 230/447 (51%), Gaps = 34/447 (7%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
            L++ K+ N+  +IHA +I  G  +++ + TK+V       C  L +      +    F 
Sbjct: 16  FLQRVKSRNEWKKIHACIIVHGLSQSSFMVTKMV-----DLCDKLGDMD----YATRLFN 66

Query: 80  EKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV-DKFSASLVLKACSRLGLIE 136
           +  +P  FL+N+II+ Y+H     + + ++  +L   +   D+F+   + K+C+ LG   
Sbjct: 67  QVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCY 126

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G Q+HG L K      +  +N LI +Y++   L  A ++FD+M  RD +S+NS++ GY 
Sbjct: 127 LGKQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERDVISWNSLLSGYA 186

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLIS 252
           + G ++ A+ LF  M   ++ ++SW ++++GY  +   ++ A   F +M     E D IS
Sbjct: 187 RLGQMKKAKGLFHLMI--DKTIVSWTAMISGYTGIGCYVE-AMDFFREMQLAGIEPDEIS 243

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN----MIDGYAKLGRVDIARRLFDEMP 308
             S+L  C   G ++  + +     +R ++        +I+ Y+K G +  A +LF++  
Sbjct: 244 LISVLPSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTK 303

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            +DV++ + M+ GY  +G + +A E F  MQ    + P+  + + +LSA + +G   +G+
Sbjct: 304 GKDVISWSTMISGYAYHGNAHRAFETFIEMQ-RAKVKPNGITFLGLLSACSHVGLWQQGL 362

Query: 369 AIHRYLEKD-QFSLNGKHGVALIDMYSKCGSIENAIKVFEQI---EDGSVDHWNAMINGL 424
                + +D Q     +H   LID+ ++ G +E A+++ + +    D  +  W ++++  
Sbjct: 363 KYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPVKPDSKI--WGSLLSSC 420

Query: 425 AIHGLGELAFDLLMEMERL-SIEPDDI 450
              G  ++A   L+ M+ L  +EPDD+
Sbjct: 421 RTKGNLDVA---LVAMDHLVEVEPDDM 444


>gi|6729034|gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
          Length = 548

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 189/574 (32%), Positives = 304/574 (52%), Gaps = 43/574 (7%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L  C++L ++NQ+H  MI +  I+N    ++L+   ++ P T    +AR +F        
Sbjct: 13  LENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDC--- 69

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
               ++WN++I+ YS+  +P +AL+ +  ML  G S D F+   VLKACS L  I+ G  
Sbjct: 70  -PSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSC 128

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +HG + K  F  ++++  CL+ +Y+ CG + +  ++F+                      
Sbjct: 129 VHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFED--------------------- 167

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS-MLHG 259
                       I + N+++W S+++G+    +    A + F +M    + +  + M+  
Sbjct: 168 ------------IPQWNVVAWGSLISGFVN-NNRFSDAIEAFREMQSNGVKANETIMVDL 214

Query: 260 CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM 319
            V CG+  D    F      +V+   ++ID YAK G +  AR LFD MP+R +V+ N+++
Sbjct: 215 LVACGRCFDP--YFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSII 272

Query: 320 GGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF 379
            GY +NG + +AL +F +M  +L + PD  + + V+ A    G    G +IH Y+ K  F
Sbjct: 273 TGYSQNGDAEEALCMFLDM-LDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGF 331

Query: 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLME 439
             +     AL++MY+K G  E+A K FE +E      W  +I GLA HG G  A  +   
Sbjct: 332 VKDAAIVCALVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQR 391

Query: 440 M-ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
           M E+ +  PD IT+ G+L AC+H GLV+EG   F  MR +H LEP ++HYGCMVDIL RA
Sbjct: 392 MQEKGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRA 451

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           G  E A  L++ MP++PN  IW  LL+ C  +ENL + + +   +   +   S  YVLLS
Sbjct: 452 GRFEEAERLVKTMPVKPNVNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLS 511

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           N++A  G W D + +R  MK + + K+ G S +E
Sbjct: 512 NIYAKAGRWADVKLIRESMKSKRVDKVLGHSSVE 545


>gi|224140235|ref|XP_002323489.1| predicted protein [Populus trichocarpa]
 gi|222868119|gb|EEF05250.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 194/602 (32%), Positives = 317/602 (52%), Gaps = 27/602 (4%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE--KKDPFLWNA 89
           Q+HA  I  G+ +   +   L+  +    C         +    H F E  ++D   WN 
Sbjct: 224 QVHALAIKLGYSQLVFVANALIGLYGKCGC---------LDHAIHLFDEMPQRDIASWNT 274

Query: 90  IIKTYSHGLDPKEALVMFCLMLDN-GVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKV 148
           +I +   GL  ++AL +F ++  N G   D+F+ S +L AC+R     +G +IH    ++
Sbjct: 275 MISSLVKGLSYEKALELFRVLNQNKGFKADQFTLSTLLTACARCHARIQGREIHAYAIRI 334

Query: 149 AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELF 208
              ++L + N +I  Y RCG L     LF++M +RD +++  MI  Y++ G ++ A ++F
Sbjct: 335 GLENNLSVSNAIIGFYTRCGSLNHVAALFERMPVRDIITWTEMITAYMEFGLVDLAVDMF 394

Query: 209 DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVK-CG--- 264
           + MP  E+N +S+N++L G+ +   GL+ A  +F +M +      +  L G +  CG   
Sbjct: 395 NKMP--EKNSVSYNALLTGFCKNNEGLK-ALNLFVRMVQEGAELTDFTLTGVINACGLLL 451

Query: 265 KMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMPKR--DVVACNAM 318
           K++ ++ +   + K     +    A +ID  +K GR+D A R+F  +     + +   +M
Sbjct: 452 KLEISRQIHGFIIKFGFRSNACIEAALIDMCSKCGRMDDADRMFQSLSTDGGNSIIQTSM 511

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
           + GY RNG   +A+ +F   Q E  +  D+ +   +L     LG  + G  IH    K  
Sbjct: 512 ICGYARNGLPEEAICLFYRCQSEGTMVLDEVAFTSILGVCGTLGFHEVGKQIHCQALKTG 571

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
           F      G ++I MYSKC +I++AIK F  +    V  WN +I G  +H  G+ A  +  
Sbjct: 572 FHAELGVGNSIISMYSKCYNIDDAIKAFNTMPGHDVVSWNGLIAGQLLHRQGDEALAIWS 631

Query: 439 EMERLSIEPDDITFTGLLNA--CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
            ME+  I+PD ITF  +++A     + L+ E    F  M+ IH LEP  +HY  +V +LG
Sbjct: 632 SMEKAGIKPDAITFVLIVSAYKFTSSNLLDECRSLFLSMKMIHDLEPTSEHYASLVGVLG 691

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556
             G +E A  LI  MP +P   +WR LL  CR + N ++G+ VAKH+IGM+  + S+YVL
Sbjct: 692 YWGLLEEAEELINKMPFDPEVSVWRALLDGCRLHANTSIGKRVAKHIIGMEPRDPSTYVL 751

Query: 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYM 616
           +SN++A  G W+ +  VR  M++R L+K P  SW+ ++  +H F+ RDKS  Q  DIY  
Sbjct: 752 VSNLYAASGRWHCSEMVRENMRDRGLRKHPCRSWVIIKKQLHTFYARDKSHPQSNDIYSG 811

Query: 617 LD 618
           LD
Sbjct: 812 LD 813



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 155/548 (28%), Positives = 273/548 (49%), Gaps = 42/548 (7%)

Query: 3   VSANYNQPCNSTQSTLL------LLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLV 53
           + +NY+ P  +T   +       LLR      D++    +HA ++  G  ++THL   ++
Sbjct: 87  LDSNYHSPQTNTDCLIEVDDLFNLLRLSVKYTDIDLARALHASILKLG--EDTHLGNAVI 144

Query: 54  ASFSSSPCTPLTEFARYIFFKYHAFREKKDPFL--WNAIIKTYSHGLDPKEALVMFCLML 111
           A++              +   Y  F     P +  ++A+I ++S      EA+ +F  M 
Sbjct: 145 AAYIK---------LGLVVDAYEVFMGMSTPDVVSYSALISSFSKLNRETEAIQLFFRMR 195

Query: 112 DNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLE 171
            +G+  +++S   +L AC R   +E GLQ+H L  K+ +   +F+ N LI LY +CG L+
Sbjct: 196 ISGIEPNEYSFVAILTACIRSLELEMGLQVHALAIKLGYSQLVFVANALIGLYGKCGCLD 255

Query: 172 FARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR---ERNLISWNSVLNGY 228
            A  LFD+M  RD  S+N+MI   VK  + E A ELF  +      + +  + +++L   
Sbjct: 256 HAIHLFDEMPQRDIASWNTMISSLVKGLSYEKALELFRVLNQNKGFKADQFTLSTLLTAC 315

Query: 229 AQLKSGLQ----FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSW 284
           A+  + +Q     A+ I   + E +L   N+++    +CG ++   ALF++MP RD+++W
Sbjct: 316 ARCHARIQGREIHAYAIRIGL-ENNLSVSNAIIGFYTRCGSLNHVAALFERMPVRDIITW 374

Query: 285 ANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYL 344
             MI  Y + G VD+A  +F++MP+++ V+ NA++ G+ +N   +KAL +F  M  E   
Sbjct: 375 TEMITAYMEFGLVDLAVDMFNKMPEKNSVSYNALLTGFCKNNEGLKALNLFVRMVQE-GA 433

Query: 345 HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIK 404
              D +L  V++A   L  ++    IH ++ K  F  N     ALIDM SKCG +++A +
Sbjct: 434 ELTDFTLTGVINACGLLLKLEISRQIHGFIIKFGFRSNACIEAALIDMCSKCGRMDDADR 493

Query: 405 VFEQI--EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL-SIEPDDITFTGLLNACAH 461
           +F+ +  + G+     +MI G A +GL E A  L    +   ++  D++ FT +L  C  
Sbjct: 494 MFQSLSTDGGNSIIQTSMICGYARNGLPEEAICLFYRCQSEGTMVLDEVAFTSILGVCGT 553

Query: 462 AGL--VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI 519
            G   V + + C  L    H    EL     ++ +  +  +I+ A      MP   +DV+
Sbjct: 554 LGFHEVGKQIHCQALKTGFHA---ELGVGNSIISMYSKCYNIDDAIKAFNTMP--GHDVV 608

Query: 520 -WRTLLSA 526
            W  L++ 
Sbjct: 609 SWNGLIAG 616


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 203/674 (30%), Positives = 325/674 (48%), Gaps = 86/674 (12%)

Query: 19  LLLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           ++L+ C  + D     Q+H   I  GF  +    T LV  +S+  C  L + A  IF + 
Sbjct: 175 VVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYST--CKKL-DHAFNIFCE- 230

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
                +++   W+A+I  Y       E L ++ +MLD G+ V + + +   ++C+ L   
Sbjct: 231 ---MPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAF 287

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
           E G Q+H    K  FG D  +    + +Y +C  +  AR++F+        S+N++I GY
Sbjct: 288 ELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGY 347

Query: 196 VKSGNIESARELFDSM--------PIRERNLISWNSVLNGYAQ--------LKSGLQF-- 237
            +   +  A E+F S+         I     ++  S + GY +        +K GL F  
Sbjct: 348 ARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNI 407

Query: 238 ------------------AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR 279
                             A  IF+ M  +D +SWN+++    +   +++  ALF  M + 
Sbjct: 408 CVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRS 467

Query: 280 DV------------------------------------VSW---ANMIDGYAKLGRVDIA 300
            +                                    + W   + +ID Y K G +  A
Sbjct: 468 TMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEA 527

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
            ++ + + +R  V+ N+++ G+        AL  F  M  ++ + PD+ +   VL   A 
Sbjct: 528 EKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRM-LQVGVIPDNFTYATVLDICAN 586

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
           L  ++ G  IH  + K Q   +      ++DMYSKCG+++++  +FE+        W+AM
Sbjct: 587 LATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAM 646

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           I   A HGLGE A  L  EM+  +++P+   F  +L ACAH G V +GL  F  MR  + 
Sbjct: 647 ICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYG 706

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           L+P+++HY CMVD+LGR+G +  A  LIE MP E +DVIWRTLL  CR   N+ V E  A
Sbjct: 707 LDPQMEHYSCMVDLLGRSGQVNEALELIESMPFEADDVIWRTLLGICRLQGNVEVAEKAA 766

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
             L+ +D  +SS+YVLLSN++A  GMW +  ++RS MK   LKK PGCSWI++   VH F
Sbjct: 767 NSLLQLDPQDSSAYVLLSNVYAIAGMWGEVAKIRSFMKNYKLKKEPGCSWIQVRDEVHAF 826

Query: 601 FVRDKSRLQVRDIY 614
            V DK+  +  +IY
Sbjct: 827 LVGDKAHPRSEEIY 840



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 144/517 (27%), Positives = 242/517 (46%), Gaps = 70/517 (13%)

Query: 119 KFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD 178
           K + S + + CS L  I  G Q H  +    F   +F+ NCL+  Y +C  L +A  +FD
Sbjct: 38  KLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFD 97

Query: 179 KMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QF 237
           KM  RD +S+N+MI GY   GN+E A+ LFDSMP  ER+++SWNS+L+ Y  L++G  + 
Sbjct: 98  KMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMP--ERDVVSWNSMLSCY--LQNGFHRK 153

Query: 238 AWQIFEKMP----ERDLISWNSMLHGC-----------VKCGKMDDAQALFDKMPKRDVV 282
           + +IF KM     + D  ++  +L  C           V C  +   Q  FD     DVV
Sbjct: 154 SIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAI---QMGFDS----DVV 206

Query: 283 SWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
           +   ++D Y+   ++D A  +F EMP+R+ V  +A++ GYVRN    + L+++  M  E 
Sbjct: 207 TGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDE- 265

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENA 402
            +    A+      + A L   + G  +H Y  K  F  +   G A +DMY+KC  + +A
Sbjct: 266 GMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDA 325

Query: 403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
            KVF    + +    NA+I G A       A ++   +++  ++ D+I+ +G L AC+  
Sbjct: 326 RKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAI 385

Query: 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM----------- 511
               EG+    L  +   L+  +     ++D+  + G +  A  + +DM           
Sbjct: 386 KGYLEGIQLHGLAVKC-GLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAI 444

Query: 512 -----------------------PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI---- 544
                                   MEP+D  + +++ AC   + LN G  V   +I    
Sbjct: 445 IAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGM 504

Query: 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581
           G+D    S+ +   +M+   GM  +A ++   ++ER 
Sbjct: 505 GLDWFVGSAII---DMYCKCGMLVEAEKIHERLEERT 538



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 148/633 (23%), Positives = 266/633 (42%), Gaps = 126/633 (19%)

Query: 20  LLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVA-------------SFSSSPCTP 63
           + +KC  L  +N   Q HA++  TGF+    ++  L+               F   P   
Sbjct: 44  IFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKMPQRD 103

Query: 64  LT---------------EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFC 108
           +                EFA+++F        ++D   WN+++  Y      ++++ +F 
Sbjct: 104 VISWNTMIFGYAGVGNMEFAQFLFDS----MPERDVVSWNSMLSCYLQNGFHRKSIEIFT 159

Query: 109 LMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCG 168
            M    +  D  + ++VLKAC+ +     GLQ+H L  ++ F SD+     L+ +Y  C 
Sbjct: 160 KMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCK 219

Query: 169 YLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELF-----DSMPIRERNLISWNS 223
            L+ A  +F +M  R+SV ++++I GYV++       +L+     + M + +    S   
Sbjct: 220 KLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFR 279

Query: 224 VLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS 283
              G +  + G Q      +     D I   + L    KC +M DA+ +F+  P     S
Sbjct: 280 SCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQS 339

Query: 284 WANMIDGYAKLGRV----DIARRL------FDEMP-KRDVVACNAMMGG----------- 321
              +I GYA+  +V    +I R L      FDE+     + AC+A+ G            
Sbjct: 340 HNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAV 399

Query: 322 -----------------YVRNGYSMKALEIFDNMQCE----------------------- 341
                            Y + G  M+A  IFD+M+ +                       
Sbjct: 400 KCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLA 459

Query: 342 LY-------LHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYS 394
           L+       + PDD +   V+ A A    ++ G+ +H  + K    L+   G A+IDMY 
Sbjct: 460 LFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYC 519

Query: 395 KCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTG 454
           KCG +  A K+ E++E+ +   WN++I+G +    GE A      M ++ + PD+ T+  
Sbjct: 520 KCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYAT 579

Query: 455 LLNACAHAGLVKEGLLCFELMRRIH------KLEPELQHYGCMVDILGRAGHIEAARNLI 508
           +L+ CA+   V       EL ++IH      +L  ++     +VD+  + G+++ +R + 
Sbjct: 580 VLDICANLATV-------ELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMF 632

Query: 509 EDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
           E  P + + V W  ++ A   Y    +GE   K
Sbjct: 633 EKAP-KRDYVTWSAMICA---YAYHGLGEDAIK 661


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 190/588 (32%), Positives = 326/588 (55%), Gaps = 24/588 (4%)

Query: 44  KNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEA 103
           +N +    L++S+S   C P  E        +HA    +D   WN++I  Y+      ++
Sbjct: 73  RNLYSWNTLLSSYSKLACLPEMERV------FHAM-PTRDMVSWNSLISAYAGRGFLLQS 125

Query: 104 LVMFCLMLDNG-VSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLIS 162
           +  + LML NG  ++++ + S +L   S+ G +  GLQ+HG + K  F S +F+ + L+ 
Sbjct: 126 VKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVD 185

Query: 163 LYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWN 222
           +Y + G +  ARQ FD+M  ++ V YN++I G ++   IE +R+LF  M  +E++ ISW 
Sbjct: 186 MYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDM--QEKDSISWT 243

Query: 223 SVLNGYAQLKSGL-QFAWQIFEKMP----ERDLISWNSMLHGCVKCGKMDDAQALFDKMP 277
           +++ G+ Q  +GL + A  +F +M     E D  ++ S+L  C     + + + +   + 
Sbjct: 244 AMIAGFTQ--NGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYII 301

Query: 278 KRD----VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE 333
           + D    +   + ++D Y K   +  A  +F +M  ++VV+  AM+ GY +NGYS +A++
Sbjct: 302 RTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVK 361

Query: 334 IFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH-RYLEKDQFSLNGKHGVALIDM 392
           IF +MQ    + PDD +L  V+S+ A L  +++G   H R L     S       AL+ +
Sbjct: 362 IFCDMQNN-GIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSN-ALVTL 419

Query: 393 YSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITF 452
           Y KCGSIE++ ++F ++       W A+++G A  G       L   M     +PD +TF
Sbjct: 420 YGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTF 479

Query: 453 TGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP 512
            G+L+AC+ AGLV++G   FE M + H++ P   HY CM+D+  RAG +E AR  I  MP
Sbjct: 480 IGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMP 539

Query: 513 MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARR 572
             P+ + W +LLS+CR + N+ +G+  A+ L+ ++  N++SY+LLS+++A  G W +   
Sbjct: 540 FSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVAN 599

Query: 573 VRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +R  M+++ L+K PGCSWI+ +  VH F   D+S      IY  L+ +
Sbjct: 600 LRKGMRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKL 647



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/465 (27%), Positives = 226/465 (48%), Gaps = 48/465 (10%)

Query: 121 SASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
           S SL    C  L    +  +IH  + K     ++FL N L+S Y +   + +AR++FD+M
Sbjct: 11  SMSLSNHYCELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQM 70

Query: 181 GIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ----LKSGLQ 236
             R+  S+N+++  Y K   +     +F +MP R+  ++SWNS+++ YA     L+S   
Sbjct: 71  PQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRD--MVSWNSLISAYAGRGFLLQSVKA 128

Query: 237 FAWQIFEKMPERDLISWNSML-----HGCV------------------------------ 261
           +   ++      + I+ ++ML      GCV                              
Sbjct: 129 YNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYS 188

Query: 262 KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
           K G +  A+  FD+MP+++VV +  +I G  +  R++ +R+LF +M ++D ++  AM+ G
Sbjct: 189 KTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAG 248

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
           + +NG   +A+++F  M+ E  L  D  +   VL+A   +  + +G  +H Y+ +  +  
Sbjct: 249 FTQNGLDREAIDLFREMRLE-NLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQD 307

Query: 382 NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEME 441
           N   G AL+DMY KC SI++A  VF ++   +V  W AM+ G   +G  E A  +  +M+
Sbjct: 308 NIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQ 367

Query: 442 RLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHI 501
              IEPDD T   ++++CA+   ++EG   F     +  L   +     +V + G+ G I
Sbjct: 368 NNGIEPDDFTLGSVISSCANLASLEEGAQ-FHCRALVSGLISFITVSNALVTLYGKCGSI 426

Query: 502 EAARNLIEDMPMEPNDVIWRTLLSACRNY----ENLNVGEPVAKH 542
           E +  L  +M    ++V W  L+S    +    E L + E +  H
Sbjct: 427 EDSHRLFSEMSY-VDEVSWTALVSGYAQFGKANETLRLFESMLAH 470



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 105/455 (23%), Positives = 190/455 (41%), Gaps = 86/455 (18%)

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
           N+++    K  ++  A+ +FD+MP+R++ SW  ++  Y+KL  +    R+F  MP RD+V
Sbjct: 48  NNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMV 107

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
           + N+++  Y   G+ +++++ ++ M      + +  +L  +L   ++ G +  G+ +H +
Sbjct: 108 SWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGH 167

Query: 374 LEKDQFSLNGKHGVALIDMYSK-------------------------------CGSIENA 402
           + K  F      G  L+DMYSK                               C  IE++
Sbjct: 168 VVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDS 227

Query: 403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
            ++F  +++     W AMI G   +GL   A DL  EM   ++E D  TF  +L AC   
Sbjct: 228 RQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGV 287

Query: 463 GLVKEGLLCFELMRR----------------------IHKLEPELQHYGC--------MV 492
             ++EG      + R                      I   E   +   C        M+
Sbjct: 288 MALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAML 347

Query: 493 DILGRAGHIEAARNLIEDMP---MEPNDVIWRTLLSACRNYENLNVGEPV-AKHLIGMDS 548
              G+ G+ E A  +  DM    +EP+D    +++S+C N  +L  G     + L+    
Sbjct: 348 VGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALV---- 403

Query: 549 SNSSSYVLLSN----MFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
           S   S++ +SN    ++   G   D+ R+ S M       +   SW  L     +F    
Sbjct: 404 SGLISFITVSNALVTLYGKCGSIEDSHRLFSEM-----SYVDEVSWTALVSGYAQF---G 455

Query: 605 KSRLQVRDIYYMLDNMWTPDSVA-----TSCTHYG 634
           K+   +R    ML + + PD V      ++C+  G
Sbjct: 456 KANETLRLFESMLAHGFKPDKVTFIGVLSACSRAG 490


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 187/588 (31%), Positives = 309/588 (52%), Gaps = 55/588 (9%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG-VSVDKFSASLVLKACSRLGLIEEG- 138
           ++D  L NA++  ++       A+ +F  +L +G +  D +S + ++ A  ++  +    
Sbjct: 122 RRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPH 181

Query: 139 -LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF---ARQLFDKMGIRDSVSYNSMIDG 194
             Q+H  + K    + L + N LI+LY++C   E    AR++ D+M  +D +++ +M+ G
Sbjct: 182 CTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVG 241

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPER----D 249
           YV+ G++ +AR +F+   +  +  + WN++++GY Q  SG+   A+++F +M       D
Sbjct: 242 YVRRGDVNAARSVFEE--VDGKFDVVWNAMISGYVQ--SGMCADAFELFRRMVSEKVPLD 297

Query: 250 LISWNSMLHGCV---------------------------------------KCGKMDDAQ 270
             ++ S+L  C                                        K GK+  A+
Sbjct: 298 EFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAK 357

Query: 271 ALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMK 330
            +FD M  +DVVSW  ++ GY   G +D A  +F  MP ++ ++   M+ GYV  G S  
Sbjct: 358 RIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSED 417

Query: 331 ALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI 390
           AL++F+ M+ E  + P D +    ++A  +LG +  G  +H +L +  F  +   G AL+
Sbjct: 418 ALKLFNQMRAE-DVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALL 476

Query: 391 DMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
            MY+KCG++ +A  VF  + +     WNAMI+ L  HG G  A +L  +M    I+PD I
Sbjct: 477 TMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRI 536

Query: 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIED 510
           +F  +L AC HAGLV EG   FE M+R   + P   HY  ++D+LGR+G I  AR+LI+ 
Sbjct: 537 SFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKT 596

Query: 511 MPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDA 570
           MP EP   IW  +LS CR   ++  G   A  L  M   +  +Y+LLSN ++  G W DA
Sbjct: 597 MPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDA 656

Query: 571 RRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
            RVR +M++R +KK PGCSWIE+   +H F V D    + +++Y  L+
Sbjct: 657 ARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLE 704



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 151/351 (43%), Gaps = 47/351 (13%)

Query: 275 KMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP--KRDVVACNAMMGGYVRNGYSMKAL 332
           + P R      +++   A  GR+  A   FD +P  +RD V  NAMM  + R   +  A+
Sbjct: 86  RTPTRAPSPATSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAV 145

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG--VAIHRYLEKDQFSLNGKHGVALI 390
            +F  +     L PDD S   ++SA+ Q+ ++       +H  + K   +       ALI
Sbjct: 146 SVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALI 205

Query: 391 DMYSKC----------------------------------GSIENAIKVFEQIEDGSVD- 415
            +Y KC                                  G +  A  VFE++ DG  D 
Sbjct: 206 ALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEV-DGKFDV 264

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCF-EL 474
            WNAMI+G    G+   AF+L   M    +  D+ TFT +L+ACA+AG    G     ++
Sbjct: 265 VWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQI 324

Query: 475 MRRIHKLEPE--LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYEN 532
           +R      PE  L     +V +  + G I  A+ + + M ++ + V W T+LS   +   
Sbjct: 325 IRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLK-DVVSWNTILSGYIDSGC 383

Query: 533 LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583
           L+    V K    M   N  S++++ + +   G+  DA ++ + M+  ++K
Sbjct: 384 LDKAVEVFKV---MPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVK 431


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 194/617 (31%), Positives = 329/617 (53%), Gaps = 61/617 (9%)

Query: 20  LLRKCKT---LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPL--TEFARYIFFK 74
           LLR C      +   Q+HA  +  GF  +  +   L+  +       L  + F R +   
Sbjct: 10  LLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRML--- 66

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
                 +++   W A++  Y    + K +L + C M  +GV  ++F+ S  LKAC  LG+
Sbjct: 67  ------ERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGV 120

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           +E G+QIHG+  K  F                    E+            SV  N+ ID 
Sbjct: 121 VENGMQIHGMCVKSGF--------------------EWV-----------SVVGNATIDM 149

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER----DL 250
           Y K G I  A ++F+ MP R  NL+SWN+++ G+    +G + +  +F++M  +    D 
Sbjct: 150 YSKCGRIGMAEQVFNKMPFR--NLVSWNAMIAGHTHEGNGRK-SLVLFQRMQGQGEVPDE 206

Query: 251 ISWNSMLHGC-----VKCGKMDDAQALFDKMPK--RDVVSWANMIDGYAKLGRVDIARRL 303
            ++ S L  C     ++ G    A  +    P   R++++ A ++D YAK G +  A+++
Sbjct: 207 FTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASA-IVDLYAKCGYLFEAQKV 265

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           FD + ++++++ +A++ G+ + G  ++A+++F  ++ E   + D   L I++   A L  
Sbjct: 266 FDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLR-ESVSNVDGFVLSIMMGVFADLAL 324

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           +++G  +H Y+ K    L+     ++IDMY KCG  E A ++F +++  +V  W  MI G
Sbjct: 325 VEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITG 384

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
              HGLGE A  L   M+   IE D++ +  LL+AC+H+GL++E    F  +   H+++P
Sbjct: 385 YGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKP 444

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
            ++HY CMVDILGRAG ++ A+NLIE+M ++PN+ IW+TLLSACR + NL +G  V + L
Sbjct: 445 NIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGREVGEIL 504

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVR 603
             MD+ N  +YV++SN++A  G W +  RVR ++K + LKK  G SW+E+   +H F+  
Sbjct: 505 FRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINKEIHFFYGG 564

Query: 604 DKSRLQVRDIYYMLDNM 620
           D +      I+ ML  M
Sbjct: 565 DDTHPLTEKIHEMLKEM 581


>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 186/529 (35%), Positives = 304/529 (57%), Gaps = 19/529 (3%)

Query: 104 LVMFCLMLDNGVSV------DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQ 157
           +V FC +L    +       D+   S++ K C+ +  ++   +IH  L K     D    
Sbjct: 1   MVPFCCLLPPSPATISKLISDQTYLSMLDKNCTTMKDLK---KIHSQLIKTGLAKDTNAA 57

Query: 158 NCLISLYVR-CGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM----P 212
           + +++      G + +A  +F ++   +  ++N++I G+ +S   +++  L+  M    P
Sbjct: 58  SRILAFCASPAGDINYAYLVFVQIQNPNIFAWNTIIRGFSRSSVPQNSISLYIDMLLTSP 117

Query: 213 IRERNLISWNSVLNGYAQL---KSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDA 269
           ++ + L ++ SV   +AQL     G Q   ++ +   E D    N++L   V CG   +A
Sbjct: 118 VQPQRL-TYPSVFKAFAQLDLASEGAQLHGKMIKLGLENDSFIRNTILFMYVNCGFTSEA 176

Query: 270 QALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSM 329
           + +FD+    D+V+W  MI G AK G VD +RRLFD+M  R+ V+ N+M+ GYVRNG   
Sbjct: 177 RKVFDRGMDFDIVAWNTMIMGVAKCGLVDESRRLFDKMSLRNAVSWNSMISGYVRNGRFF 236

Query: 330 KALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVAL 389
            ALE+F  MQ E  + P + ++V +L+A A LG I +G  IH Y+ K +F LN     A+
Sbjct: 237 DALELFQKMQVE-RIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELNPIVVTAI 295

Query: 390 IDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD 449
           IDMYSKCGSI+ A++VF+      +  WN+MI GLA++G    A  L   ++   + PDD
Sbjct: 296 IDMYSKCGSIDKAVQVFQSAPRRGLSCWNSMILGLAMNGQENEALQLFSVLQSSDLRPDD 355

Query: 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE 509
           ++F  +L AC H G+V +    F LMR  +K++P ++H+ CMVD+LGRAG +E A  LI 
Sbjct: 356 VSFIAVLTACDHTGMVDKAKDYFLLMRDKYKIKPGIKHFSCMVDVLGRAGLLEEAEELIR 415

Query: 510 DMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWND 569
            M ++P+ +IW +LL +C  Y N+ + +  A HLI ++ S SSS+VL++N +A    + +
Sbjct: 416 SMHVDPDAIIWGSLLWSCCKYGNIKMAKRAANHLIELNPSESSSFVLVANAYAAANNFEE 475

Query: 570 ARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           A + R  +KE ++ K PGCS IE+ G VHEF    ++  ++++IY +LD
Sbjct: 476 ALKERLTLKENHIGKEPGCSCIEVGGEVHEFVAGGRAHPEIKEIYRVLD 524



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 145/467 (31%), Positives = 248/467 (53%), Gaps = 59/467 (12%)

Query: 13  STQSTLLLLRK-CKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
           S Q+ L +L K C T+ D+ +IH+++I TG  K+T+  ++++A F +SP       A  I
Sbjct: 20  SDQTYLSMLDKNCTTMKDLKKIHSQLIKTGLAKDTNAASRILA-FCASP-------AGDI 71

Query: 72  FFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFC-LMLDNGVSVDKFSASLVLKA 128
            + Y  F + ++P  F WN II+ +S    P+ ++ ++  ++L + V   + +   V KA
Sbjct: 72  NYAYLVFVQIQNPNIFAWNTIIRGFSRSSVPQNSISLYIDMLLTSPVQPQRLTYPSVFKA 131

Query: 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY 188
            ++L L  EG Q+HG + K+   +D F++N ++ +YV CG+   AR++FD+    D V++
Sbjct: 132 FAQLDLASEGAQLHGKMIKLGLENDSFIRNTILFMYVNCGFTSEARKVFDRGMDFDIVAW 191

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF-AWQIFEKMP- 246
           N+MI G  K G ++ +R LFD M +  RN +SWNS+++GY  +++G  F A ++F+KM  
Sbjct: 192 NTMIMGVAKCGLVDESRRLFDKMSL--RNAVSWNSMISGY--VRNGRFFDALELFQKMQV 247

Query: 247 ---ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDI 299
              E    +  S+L+ C   G +   + + D M K+    + +    +ID Y+K G +D 
Sbjct: 248 ERIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELNPIVVTAIIDMYSKCGSIDK 307

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           A ++F   P+R +   N+M+ G   NG   +AL++F  +Q    L PDD S + VL+A  
Sbjct: 308 AVQVFQSAPRRGLSCWNSMILGLAMNGQENEALQLFSVLQSS-DLRPDDVSFIAVLTACD 366

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
             G +DK         KD F L       + D Y              +I+ G + H++ 
Sbjct: 367 HTGMVDKA--------KDYFLL-------MRDKY--------------KIKPG-IKHFSC 396

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVK 466
           M++ L   GL E A +L+  M    ++PD I +  LL +C   G +K
Sbjct: 397 MVDVLGRAGLLEEAEELIRSMH---VDPDAIIWGSLLWSCCKYGNIK 440



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 130/309 (42%), Gaps = 45/309 (14%)

Query: 32  QIHARMITTG-----FIKNTHLTTKLVASFSS------------------------SPCT 62
           Q+H +MI  G     FI+NT L   +   F+S                        + C 
Sbjct: 143 QLHGKMIKLGLENDSFIRNTILFMYVNCGFTSEARKVFDRGMDFDIVAWNTMIMGVAKCG 202

Query: 63  PLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSA 122
            L + +R +F K       ++   WN++I  Y       +AL +F  M    +   +F+ 
Sbjct: 203 -LVDESRRLFDKMSL----RNAVSWNSMISGYVRNGRFFDALELFQKMQVERIEPSEFTM 257

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI 182
             +L AC+ LG I +G  IH  + K  F  +  +   +I +Y +CG ++ A Q+F     
Sbjct: 258 VSLLNACACLGAIRQGEWIHDYMVKKKFELNPIVVTAIIDMYSKCGSIDKAVQVFQSAPR 317

Query: 183 RDSVSYNSMIDGYVKSGNIESARELF---DSMPIRERNLISWNSVLNGYAQLKSGLQFAW 239
           R    +NSMI G   +G    A +LF    S  +R  + +S+ +VL         +  A 
Sbjct: 318 RGLSCWNSMILGLAMNGQENEALQLFSVLQSSDLRPDD-VSFIAVLTACDH-TGMVDKAK 375

Query: 240 QIFEKMPERDLIS-----WNSMLHGCVKCGKMDDAQALFDKM-PKRDVVSWANMIDGYAK 293
             F  M ++  I      ++ M+    + G +++A+ L   M    D + W +++    K
Sbjct: 376 DYFLLMRDKYKIKPGIKHFSCMVDVLGRAGLLEEAEELIRSMHVDPDAIIWGSLLWSCCK 435

Query: 294 LGRVDIARR 302
            G + +A+R
Sbjct: 436 YGNIKMAKR 444


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 201/655 (30%), Positives = 333/655 (50%), Gaps = 65/655 (9%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+ C  + D+    Q+H  ++ +GF  +  +   LV  ++   C    +  R       
Sbjct: 163 VLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAK--CDEFLDSKRL------ 214

Query: 77  AFRE--KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
            F E  +++   WNA+   Y       EA+ +F  M+ +G+  ++FS S ++ AC+ L  
Sbjct: 215 -FDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRD 273

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
              G  IHG L K+ +  D F  N L+ +Y + G L  A  +F+K+   D VS+N++I G
Sbjct: 274 SSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAG 333

Query: 195 YVKSGNIESARELFDSMPIR----------ERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244
            V   + E A EL   M  +          E +L     +++ Y++    L+ A   F  
Sbjct: 334 CVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDL-LEDARMAFNL 392

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR------------------------- 279
           +PE+DLI+WN+++ G  +  +  +A +LF +M K                          
Sbjct: 393 LPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVC 452

Query: 280 --------------DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
                         D+    ++ID Y K   V+ A R+F+E    D+V+  +M+  Y + 
Sbjct: 453 RQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQY 512

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
           G   +AL++F  MQ ++ L PD      +L+A A L   ++G  +H ++ K  F L+   
Sbjct: 513 GQGEEALKLFLEMQ-DMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFA 571

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
           G +L++MY+KCGSI++A + F ++ +  +  W+AMI GLA HG G  A  L  +M +  +
Sbjct: 572 GNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGV 631

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR 505
            P+ IT   +L AC HAGLV E  L FE M  +   +P  +HY CM+D+LGRAG I  A 
Sbjct: 632 SPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAV 691

Query: 506 NLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565
            L+  MP E N  +W  LL A R ++++ +G   A+ L  ++   S ++VLL+N++A  G
Sbjct: 692 ELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAG 751

Query: 566 MWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            W +   VR +M++  +KK PG SWIE++  V+ F V D+S  + ++IY  LD +
Sbjct: 752 KWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDEL 806



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 142/534 (26%), Positives = 251/534 (47%), Gaps = 81/534 (15%)

Query: 20  LLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           LL +C   K+L    QIHA +  +G   +  +   L+  +S           R   +   
Sbjct: 62  LLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSK---------CRXFGYARK 112

Query: 77  AFREKKDPFL--WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
              E  +P L  W+A+I  Y+       AL+ F  M   GV  ++F+ S VLKACS +  
Sbjct: 113 LVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKD 172

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           +  G Q+HG++    F  D+F+ N L+ +Y +C     +++LFD++  R+ VS+N++   
Sbjct: 173 LRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSC 232

Query: 195 YVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSG------------LQFAW- 239
           YV+      A  LF  M +   + N  S +S++N    L+              L + W 
Sbjct: 233 YVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWD 292

Query: 240 ---------------------QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK 278
                                 +FEK+ + D++SWN+++ GCV     + A  L  +M +
Sbjct: 293 PFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKR 352

Query: 279 R------------DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNG 326
           +            D+     ++D Y+K   ++ AR  F+ +P++D++A NA++ GY +  
Sbjct: 353 QLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYW 412

Query: 327 YSMKALEIFDNMQCE-LYLHPDDASLVIVLSAIAQLGHIDK---GVAIHRYLEKDQFSLN 382
             M+AL +F  M  E +  +    S ++  +A  Q+ H+ +   G+++      D + +N
Sbjct: 413 EDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVN 472

Query: 383 GKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMER 442
                +LID Y KC  +E+A ++FE+   G +  + +MI   A +G GE A  L +EM+ 
Sbjct: 473 -----SLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQD 527

Query: 443 LSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
           + ++PD    + LLNACA+       L  FE  +++H     +  YG ++DI  
Sbjct: 528 MELKPDRFVCSSLLNACAN-------LSAFEQGKQLH---VHILKYGFVLDIFA 571



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 187/396 (47%), Gaps = 58/396 (14%)

Query: 99  DPKEALVMFCLMLDNG-VSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQ 157
           DP+   ++   ++D G  +    S S +L  C     +  GLQIH  + K     D  ++
Sbjct: 37  DPQTTAILN--LIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIR 94

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--E 215
           N LI+LY +C    +AR+L D+    D VS++++I GY ++G    A   F  M +   +
Sbjct: 95  NHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVK 154

Query: 216 RNLISWNSVLNGYA---QLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
            N  +++SVL   +    L+ G Q    +     E D+   N+++    KC +  D++ L
Sbjct: 155 CNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRL 214

Query: 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
           FD++P+R+VVSW                               NA+   YV+  +  +A+
Sbjct: 215 FDEIPERNVVSW-------------------------------NALFSCYVQXDFCGEAV 243

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK-----DQFSLNGKHGV 387
            +F  M     + P++ SL  +++A   L    +G  IH YL K     D FS N     
Sbjct: 244 GLFYEMVLS-GIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSAN----- 297

Query: 388 ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMER----- 442
           AL+DMY+K G + +AI VFE+I+   +  WNA+I G  +H   E A +LL +M+R     
Sbjct: 298 ALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSS 357

Query: 443 ---LSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
              + +E D     GL++  +   L+++  + F L+
Sbjct: 358 LMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLL 393


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 184/560 (32%), Positives = 282/560 (50%), Gaps = 83/560 (14%)

Query: 100 PKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNC 159
           P+ AL  +  M    + VD F    VLKACS++ +   G +IHG   K    SD+F+ N 
Sbjct: 90  PRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNA 149

Query: 160 LISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLI 219
           L+ +Y  CG L                                SAR LFD M   ER+++
Sbjct: 150 LMQMYSECGSLV-------------------------------SARLLFDKM--SERDVV 176

Query: 220 SWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR 279
           SW++++  Y  L          F    +R ++SW +M+ G ++C  +++ + LF +M + 
Sbjct: 177 SWSTMIRAYITL----------FYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEE 226

Query: 280 DVVS---------------------------------------WANMIDGYAKLGRVDIA 300
           +V                                            ++D Y K G +  A
Sbjct: 227 NVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSA 286

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
           R +FD M  +DV+   AM+  Y +      A ++F  M+ +  + P++ ++V +LS  A 
Sbjct: 287 RAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMR-DNGVRPNELTMVSLLSLCAV 345

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
            G +D G   H Y++K    ++     ALIDMY+KCG I  A ++F +  D  +  WN M
Sbjct: 346 NGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVM 405

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           + G  +HG GE A  L  EME L ++P+DITF G L+AC+HAGLV EG   FE M     
Sbjct: 406 MAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFG 465

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           L P+++HYGCMVD+LGRAG ++ A  +IE MP+ PN  IW  +L+AC+ ++N N+GE  A
Sbjct: 466 LVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAA 525

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
           + L+ ++  N    VL+SN++A    WND   +R  +K+  +KK PG S IE+ G+VH+F
Sbjct: 526 RELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHDF 585

Query: 601 FVRDKSRLQVRDIYYMLDNM 620
            + D +   +  I  ML  M
Sbjct: 586 KMGDTAHPLIEKISEMLAEM 605



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 174/382 (45%), Gaps = 49/382 (12%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           W A+I  Y    D +E   +F  M++  V  +  +   ++ +C  +G ++ G ++H  + 
Sbjct: 200 WTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYIL 259

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           +  FG  L L   L+ +Y +CG +  AR +FD M  +D +++ +MI  Y ++  I+ A +
Sbjct: 260 RNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQ 319

Query: 207 LFDSM---PIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
           LF  M    +R  E  ++S  S+      L  G  F   I ++  E D+I   +++    
Sbjct: 320 LFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYA 379

Query: 262 KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
           KCG +  AQ LF +   RD+ +W  M+ GY                              
Sbjct: 380 KCGDISGAQRLFSEAIDRDICTWNVMMAGYG----------------------------- 410

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
              +GY  KAL++F  M+  L + P+D + +  L A +  G + +G  +   +  D F L
Sbjct: 411 --MHGYGEKALKLFTEMET-LGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHD-FGL 466

Query: 382 NGK--HGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIH---GLGELAFD 435
             K  H   ++D+  + G ++ A K+ E +    ++  W AM+    IH    +GELA  
Sbjct: 467 VPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELA-- 524

Query: 436 LLMEMERLSIEPDDITFTGLLN 457
                E L++EP +  +  L++
Sbjct: 525 ---ARELLALEPQNCGYKVLMS 543



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 122/290 (42%), Gaps = 46/290 (15%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           ++HA ++  GF  +  L T LV  +    C  +   AR IF       + KD   W A+I
Sbjct: 253 RLHAYILRNGFGMSLALATALVDMYGK--CGEIRS-ARAIFDSM----KNKDVMTWTAMI 305

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
             Y+       A  +F  M DNGV  ++ +   +L  C+  G ++ G   H  + K    
Sbjct: 306 SAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVE 365

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
            D+ L+  LI +Y +CG +  A++LF +   RD  ++N M+ GY   G  E A +LF  M
Sbjct: 366 VDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEM 425

Query: 212 PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQA 271
              E   +  N                            I++   LH C   G + + + 
Sbjct: 426 ---ETLGVKPND---------------------------ITFIGALHACSHAGLVVEGKG 455

Query: 272 LFDKM-------PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
           LF+KM       PK  V  +  M+D   + G +D A ++ + MP    +A
Sbjct: 456 LFEKMIHDFGLVPK--VEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIA 503


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 196/617 (31%), Positives = 316/617 (51%), Gaps = 72/617 (11%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE--KKDPFLWNA 89
           +IH  +IT GF  N    T +V  ++           R I   Y  F    ++D   WN 
Sbjct: 163 EIHGMVITNGFQSNLFAMTAVVNLYAK---------CRQIEDAYKMFERMPQRDLVSWNT 213

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA 149
           ++  Y+     + A+ +   M + G   D  +   VL A + L  +  G  IHG   +  
Sbjct: 214 VVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAG 273

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD 209
           F    ++ N                               +M+D Y K G++ SAR +F 
Sbjct: 274 FE---YMVNVA----------------------------TAMLDTYFKCGSVRSARLVFK 302

Query: 210 SMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----ISWNSMLHGCVKCGK 265
            M    RN++SWN++++GYAQ     + A+  F KM +  +    +S    LH C   G 
Sbjct: 303 GMS--SRNVVSWNTMIDGYAQ-NGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGD 359

Query: 266 MDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
           ++  + +   + ++    DV    ++I  Y+K  RVDIA  +F  +  + VV  NAM+ G
Sbjct: 360 LERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILG 419

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK-----GVAIHRYLEK 376
           Y +NG   +AL +F  MQ    + PD  +LV V++A+A L    +     G+AI   ++K
Sbjct: 420 YAQNGCVNEALNLFCEMQSH-DIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDK 478

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
           + F        ALID ++KCG+I+ A K+F+ +++  V  WNAMI+G   +G G  A DL
Sbjct: 479 NVFVC-----TALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDL 533

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
             EM+  S++P++ITF  ++ AC+H+GLV+EG+  FE M+  + LEP + HYG MVD+LG
Sbjct: 534 FNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLG 593

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556
           RAG ++ A   I+DMP++P   +   +L ACR ++N+ +GE  A  L  +D  +   +VL
Sbjct: 594 RAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVL 653

Query: 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYM 616
           L+NM+A   MW+   RVR+ M+++ ++K PGCS +EL   VH F+    +  Q + IY  
Sbjct: 654 LANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAY 713

Query: 617 LDNM--------WTPDS 625
           L+ +        + PD+
Sbjct: 714 LETLGDEMKAAGYVPDT 730



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 146/556 (26%), Positives = 248/556 (44%), Gaps = 87/556 (15%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
             + +LL  C +L +++QI   +I  GF       TKL++ F       +TE AR +F  
Sbjct: 45  HPSAILLELCTSLKELHQILPLIIKNGFYNEHLFQTKLISLFCK--FNSITEAAR-VFEP 101

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
                E K   L++ ++K Y+     ++A+  +  M  + V    +  + +L+       
Sbjct: 102 V----EHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLD 157

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           +  G +IHG++    F S+LF    +++LY +C  +E A ++F++M  RD VS+N+++ G
Sbjct: 158 LRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAG 217

Query: 195 YVKSGNIESARELFDSM--PIRERNLISWNSVLNGYAQLKS---GLQFAWQIFEKMPERD 249
           Y ++G    A ++   M    ++ + I+  SVL   A LK+   G       F    E  
Sbjct: 218 YAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYM 277

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
           +    +ML    KCG +  A+ +F  M  R+VVSW  MIDGYA+                
Sbjct: 278 VNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQ---------------- 321

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
                          NG S +A   F  M  E  + P + S++  L A A LG +++G  
Sbjct: 322 ---------------NGESEEAFATFLKMLDE-GVEPTNVSMMGALHACANLGDLERGRY 365

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
           +HR L++ +   +     +LI MYSKC  ++ A  VF  ++  +V  WNAMI G A +G 
Sbjct: 366 VHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGC 425

Query: 430 GELAFDLLMEMERLSIEPDDITF-----------------------------------TG 454
              A +L  EM+   I+PD  T                                    T 
Sbjct: 426 VNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTA 485

Query: 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM--- 511
           L++  A  G ++     F+LM+  H +      +  M+D  G  GH   A +L  +M   
Sbjct: 486 LIDTHAKCGAIQTARKLFDLMQERHVIT-----WNAMIDGYGTNGHGREALDLFNEMQNG 540

Query: 512 PMEPNDVIWRTLLSAC 527
            ++PN++ + ++++AC
Sbjct: 541 SVKPNEITFLSVIAAC 556



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 187/368 (50%), Gaps = 37/368 (10%)

Query: 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQL 176
           V +  ++++L+ C+ L   +E  QI  L+ K  F ++   Q  LISL+ +   +  A ++
Sbjct: 42  VYRHPSAILLELCTSL---KELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARV 98

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQ 236
           F+ +  +  V Y++M+ GY K+  +  A   ++ M   E   + ++     +  L   LQ
Sbjct: 99  FEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYD-----FTYL---LQ 150

Query: 237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR 296
            + +  +    R++       HG V                + ++ +   +++ YAK  +
Sbjct: 151 LSGENLDLRRGREI-------HGMVITNGF-----------QSNLFAMTAVVNLYAKCRQ 192

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           ++ A ++F+ MP+RD+V+ N ++ GY +NG++ +A+++   MQ E    PD  +LV VL 
Sbjct: 193 IEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQ-EAGQKPDSITLVSVLP 251

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
           A+A L  +  G +IH Y  +  F        A++D Y KCGS+ +A  VF+ +   +V  
Sbjct: 252 AVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVS 311

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           WN MI+G A +G  E AF   ++M    +EP +++  G L+ACA+ G ++ G       R
Sbjct: 312 WNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERG-------R 364

Query: 477 RIHKLEPE 484
            +H+L  E
Sbjct: 365 YVHRLLDE 372



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 116/454 (25%), Positives = 199/454 (43%), Gaps = 60/454 (13%)

Query: 16  STLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           S L  +   K L     IH      GF    ++ T ++ ++    C  +   AR +F   
Sbjct: 248 SVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFK--CGSVRS-ARLVF--- 301

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
                 ++   WN +I  Y+   + +EA   F  MLD GV     S    L AC+ LG +
Sbjct: 302 -KGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDL 360

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
           E G  +H LL +   G D+ + N LIS+Y +C  ++ A  +F  +  +  V++N+MI GY
Sbjct: 361 ERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGY 420

Query: 196 VKSGNIESARELFDSMPIRERNLISWN--SVLNGYAQLKSGLQFAW---QIFEKMPERDL 250
            ++G +  A  LF  M   +    S+   SV+   A L    Q  W        + ++++
Sbjct: 421 AQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNV 480

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
               +++    KCG +  A+ LFD M +R V++W  MIDGY                   
Sbjct: 481 FVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGT----------------- 523

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
                         NG+  +AL++F+ MQ    + P++ + + V++A +  G +++G+  
Sbjct: 524 --------------NGHGREALDLFNEMQ-NGSVKPNEITFLSVIAACSHSGLVEEGM-- 566

Query: 371 HRYLE--KDQFSLNGK--HGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLA 425
             Y E  K+ + L     H  A++D+  + G +++A K  + +     +    AM+    
Sbjct: 567 -YYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACR 625

Query: 426 IHG---LGELAFDLLMEMERLSIEPDDITFTGLL 456
           IH    LGE   D     E   ++PDD  +  LL
Sbjct: 626 IHKNVELGEKTAD-----ELFDLDPDDGGYHVLL 654


>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
 gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 172/497 (34%), Positives = 279/497 (56%), Gaps = 11/497 (2%)

Query: 131 RLGLIEEGLQIHGLLRKVAFG----SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSV 186
           + G +E+  QIHG  + V  G        L   L++ Y + G    A+++F+ +   D V
Sbjct: 12  KCGSLEKLKQIHG--KAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNHIQNPDIV 69

Query: 187 SYNSMIDGYVKSGNIESARELFDSM---PIRERN--LISWNSVLNGYAQLKSGLQFAWQI 241
           S+  +I  Y+ +     A  +F  +    +R  +  ++   S       L +G      +
Sbjct: 70  SWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGMV 129

Query: 242 FEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIAR 301
           F      D I  N+++    + G ++ A ++F  M  +DV SW ++++G+ K   ++ AR
Sbjct: 130 FRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAAR 189

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
           R+FDEMP R+ V+  AM+ GYV+    +  LE+F  M+ E    P   ++V VLS  A +
Sbjct: 190 RIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADI 249

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
           G  D G ++H Y+ K    L+     AL+DMY+K G++  A+K+F+++    V  W  MI
Sbjct: 250 GAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMI 309

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
           +GLA+HG G  A +   +M +  + P+++T   +L+AC+HAGLV EG   F+ M + H +
Sbjct: 310 SGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGI 369

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
           +P++QHYGCMVD+LGRAG +  A+ LIE MP++P+ VIWR+LLSAC  + NL + E   K
Sbjct: 370 KPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNLALAEMAGK 429

Query: 542 HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
            +I ++  +   Y+LL N++     W DA + R  M++R +KK PGCSW+E+ GVVHEF 
Sbjct: 430 MIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGCSWVEVNGVVHEFL 489

Query: 602 VRDKSRLQVRDIYYMLD 618
             D       D+Y +L+
Sbjct: 490 AEDAVHCIRADVYTVLE 506



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 130/456 (28%), Positives = 230/456 (50%), Gaps = 38/456 (8%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFI--KNTHLTTKLVASFSS--SPCTPLTEFA 68
           +TQ+   LL+KC +L  + QIH + +T G +  K  HL  KL+ +++   SP      F 
Sbjct: 2   NTQTFYFLLQKCGSLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFN 61

Query: 69  RYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA 128
                      +  D   W  +I  Y H   P +A  +F  +  +G+  D F     + A
Sbjct: 62  HI---------QNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSA 112

Query: 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY 188
           C     +  G  +HG++ +   GSD  + N LI +Y R G +E A  +F  M I+D  S+
Sbjct: 113 CGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSW 172

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER 248
            S+++G++K  +IE+AR +FD MP+  RN +SW +++ GY Q +  +    ++F++M   
Sbjct: 173 TSLLNGFIKCNDIEAARRIFDEMPM--RNSVSWTAMITGYVQGEVPIP-GLELFQEMRAE 229

Query: 249 -----DLISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDI 299
                 +I+  ++L GC   G  D   ++   + K     DV     ++D YAK G + +
Sbjct: 230 GKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVL 289

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           A ++F EMPKRDV +   M+ G   +G    ALE F +M  +  + P++ +L+ VLSA +
Sbjct: 290 ALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMS-KSGVVPNEVTLLSVLSACS 348

Query: 360 QLGHIDKGVAI-HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ--IEDGSVDH 416
             G + +G ++  + ++        +H   ++D+  + G +  A ++ E   I+  SV  
Sbjct: 349 HAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVI- 407

Query: 417 WNAMINGLAIHG---LGELAFDLLMEMERLSIEPDD 449
           W ++++   +HG   L E+A  +++E+     EPDD
Sbjct: 408 WRSLLSACLVHGNLALAEMAGKMIIEL-----EPDD 438


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 187/565 (33%), Positives = 294/565 (52%), Gaps = 53/565 (9%)

Query: 72   FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
            F+KY    +K +   WN++I   + G D  EAL  F  +   G+   + S    +K+CS 
Sbjct: 1098 FYKY---VDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 1154

Query: 132  LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
            L  +  G   H       F +DLF+ + LI +Y +C                        
Sbjct: 1155 LCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKC------------------------ 1190

Query: 192  IDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER--- 248
                   G ++ AR LFD +P+R  N++SW S++ GY Q +     A  +F+   E    
Sbjct: 1191 -------GQLKDARALFDEIPLR--NVVSWTSMITGYVQNEQA-DNALLLFKDFLEEETE 1240

Query: 249  ---------DLISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLG 295
                     D +   S+L  C +       + +   + K+     +     ++D YAK G
Sbjct: 1241 VEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCG 1300

Query: 296  RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
            +  +++++FD M ++D ++ N+M+  Y ++G S +ALE+F  M   + +  +  +L  VL
Sbjct: 1301 QPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVL 1360

Query: 356  SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
             A A  G +  G  IH  + K     N   G ++IDMY KCG +E A K F+++++ +V 
Sbjct: 1361 LACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVK 1420

Query: 416  HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
             W AM+ G  +HG  + A D+  +M R  ++P+ ITF  +L AC+HAGLV+EG   F  M
Sbjct: 1421 SWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAM 1480

Query: 476  RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNV 535
            +  + +EP ++HYGCMVD+ GRAG +  A NLI+ M M+P+ V+W +LL ACR ++N+++
Sbjct: 1481 KHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDL 1540

Query: 536  GEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG 595
            GE  A+ L  +D  N   YVLLSN++A  G W D  R+R +MK R L K PG S +EL+G
Sbjct: 1541 GEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKG 1600

Query: 596  VVHEFFVRDKSRLQVRDIYYMLDNM 620
             VH F V DK       IY  L+ +
Sbjct: 1601 RVHVFLVGDKEHPHHEMIYKYLEKL 1625



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 205/377 (54%), Gaps = 20/377 (5%)

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           QIH  + +    +D  L   LI LY   G + +A  LF ++    + ++N +I     +G
Sbjct: 45  QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTING 104

Query: 200 NIESARELFDSM------------PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
             E A  L+ +M            P   +   ++ S+  G     S +++ +        
Sbjct: 105 LSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFS------- 157

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
            D+   N+++    KCG    A  +F+KM  R+VVSW  +I G    G +  ARR+FDE+
Sbjct: 158 GDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEI 217

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
           P ++VV+  AM+ GY+RN    +ALE+F  MQ E  + P++ ++V ++ A  ++G +  G
Sbjct: 218 PSKNVVSWTAMINGYIRNQQPEEALELFKRMQAE-NIFPNEYTMVSLIKACTEMGILTLG 276

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
             IH Y  K+   +    G ALIDMYSKCGSI++AI+VFE +   S+  WN+MI  L +H
Sbjct: 277 RGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVH 336

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           GLG+ A +L  EMER++++PD ITF G+L AC H   VKEG   F  M + + + P  +H
Sbjct: 337 GLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEH 396

Query: 488 YGCMVDILGRAGHIEAA 504
           Y CM ++  R+ +++ A
Sbjct: 397 YECMTELYARSNNLDEA 413



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 215/406 (52%), Gaps = 24/406 (5%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
           +  L LL+ CK    + QIHA++I +G   +  LT KL+  +S+            I + 
Sbjct: 28  KKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTH---------GRIAYA 78

Query: 75  YHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL 132
              F + ++P  F WN II+  +     ++AL+++  M+  G++ DKF+   V+KAC+  
Sbjct: 79  ILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNF 138

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
             I+ G  +HG L K  F  D+F+QN LI  Y +CG+  FA ++F+KM +R+ VS+ ++I
Sbjct: 139 LSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVI 198

Query: 193 DGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI- 251
            G +  G+++ AR +FD +P   +N++SW +++NGY + +   + A ++F++M   ++  
Sbjct: 199 SGLISCGDLQEARRIFDEIP--SKNVVSWTAMINGYIRNQQPEE-ALELFKRMQAENIFP 255

Query: 252 ---SWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLF 304
              +  S++  C + G +   + + D   K      V     +ID Y+K G +  A  +F
Sbjct: 256 NEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVF 315

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
           + MP++ +   N+M+     +G   +AL +F  M+  + + PD  + + VL A   + ++
Sbjct: 316 ETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEME-RVNVKPDAITFIGVLCACVHIKNV 374

Query: 365 DKGVA-IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
            +G A   R  +    +   +H   + ++Y++  +++ A K  +++
Sbjct: 375 KEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEV 420


>gi|413918046|gb|AFW57978.1| hypothetical protein ZEAMMB73_147394 [Zea mays]
          Length = 729

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 179/543 (32%), Positives = 296/543 (54%), Gaps = 40/543 (7%)

Query: 82  KDPFLWNAIIKTYSHGLDP--KEALVMFC-LMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
           +D F W A+I  Y+ G D    +AL +F  L+ D+GV  ++++   VL+AC RLG ++ G
Sbjct: 203 RDVFAWTAVISGYAKGTDQCCGKALQLFVKLLADDGVMPNEYTYDSVLRACVRLGALDFG 262

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
             +HG L +  F S+  + + L+ LY     L+ A  +++ +    S++ N++I G +  
Sbjct: 263 RSVHGCLIRCGFRSEQLITSALVDLYCTSDALDDALLVYNDLDRPSSITSNTLIAGLISI 322

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLH 258
           G  E A+                                   +F +MPE+D  S+N M+ 
Sbjct: 323 GRTEHAK----------------------------------MVFSQMPEQDSGSYNLMIK 348

Query: 259 GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP-KRDVVACNA 317
                G+++  + +F+KMP+R++VS  +M+    + GR++   +LF ++  +RD +  N+
Sbjct: 349 AYAMEGELEHCRRIFEKMPRRNMVSLNSMMSVLLQNGRLEEGLKLFKQIKDERDTITWNS 408

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           M+ GY++N    +AL++F  M C L +    ++   +L A A +G +++G  +H +L K 
Sbjct: 409 MISGYIQNDKPSEALKLFVVM-CRLSIECSPSTFSALLHACATIGTLEQGRMVHCHLCKT 467

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLL 437
            F  +   G AL DMY KCG + +A   F  +   +V  W ++INGLA +G    A    
Sbjct: 468 SFDSSDHVGTALADMYFKCGCVIDAQSAFTYVTSPNVASWTSLINGLAQNGHWLEALSQF 527

Query: 438 MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
             M +  ++P++ITF GLL A A AGLV +G+  F  M     L P +QH  C+VD+LGR
Sbjct: 528 GRMLKHHVKPNEITFLGLLMASARAGLVNKGMKIFYSMENF-GLVPTVQHCTCVVDLLGR 586

Query: 498 AGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557
            G    A   I +MP+  + VIW  LL+AC    +L +GE VA+ L  M + + S+YV +
Sbjct: 587 TGRTREAEKFIYEMPLPADGVIWGALLTACWYSMDLEMGEKVAQRLFFMGTKHRSAYVAM 646

Query: 558 SNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           SN++A LG W D  +VR+ ++  N +K PGCSWIE++G+VH F V D++  +   +Y ML
Sbjct: 647 SNIYAKLGKWEDVVKVRTWLRSLNAEKEPGCSWIEIKGIVHVFLVDDQNHPERETMYSML 706

Query: 618 DNM 620
           + +
Sbjct: 707 EAL 709



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 161/362 (44%), Gaps = 17/362 (4%)

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIE-----SARELFDSMPIRERNLISWNSVLNG 227
            R LFD    RD++S+N+++ G+ + GN+      +AR     +P  E    S       
Sbjct: 60  TRYLFDGTRHRDAISWNAVVSGHARHGNVPDALDTAARMHSSGVPFTEATFASVVGACAR 119

Query: 228 YAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANM 287
                +G Q   Q+ +   E   ++  S+L     C  +   + LF+ +  ++ + W+ M
Sbjct: 120 GRMFCAGTQAHGQVIKSGCEGFAVTGASLLDFYSSCFDLRATRTLFESLRPKNELLWSPM 179

Query: 288 IDGYAKLGRVDIARRLFDEMP-KRDVVACNAMMGGYVRNGYSM--KALEIFDNMQCELYL 344
           +    + G +  A  L    P  RDV A  A++ GY +       KAL++F  +  +  +
Sbjct: 180 VVALVRFGLLAEALDLLQNTPAPRDVFAWTAVISGYAKGTDQCCGKALQLFVKLLADDGV 239

Query: 345 HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIK 404
            P++ +   VL A  +LG +D G ++H  L +  F        AL+D+Y    ++++A+ 
Sbjct: 240 MPNEYTYDSVLRACVRLGALDFGRSVHGCLIRCGFRSEQLITSALVDLYCTSDALDDALL 299

Query: 405 VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL 464
           V+  ++  S    N +I GL   G  E A  +  +M     E D  ++  ++ A A  G 
Sbjct: 300 VYNDLDRPSSITSNTLIAGLISIGRTEHAKMVFSQMP----EQDSGSYNLMIKAYAMEGE 355

Query: 465 VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
           ++     FE M R + +         M+ +L + G +E    L + +  E + + W +++
Sbjct: 356 LEHCRRIFEKMPRRNMVS-----LNSMMSVLLQNGRLEEGLKLFKQIKDERDTITWNSMI 410

Query: 525 SA 526
           S 
Sbjct: 411 SG 412



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 116/245 (47%), Gaps = 20/245 (8%)

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
           +   ++++D   WN++I  Y     P EAL +F +M    +     + S +L AC+ +G 
Sbjct: 394 FKQIKDERDTITWNSMISGYIQNDKPSEALKLFVVMCRLSIECSPSTFSALLHACATIGT 453

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           +E+G  +H  L K +F S   +   L  +Y +CG +  A+  F  +   +  S+ S+I+G
Sbjct: 454 LEQGRMVHCHLCKTSFDSSDHVGTALADMYFKCGCVIDAQSAFTYVTSPNVASWTSLING 513

Query: 195 YVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLI 251
             ++G+   A   F  M     + N I++  +L   A  ++GL     +IF  M    L+
Sbjct: 514 LAQNGHWLEALSQFGRMLKHHVKPNEITFLGLL--MASARAGLVNKGMKIFYSMENFGLV 571

Query: 252 SWNSMLH-GCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDG--YA---KLGRVDI 299
              ++ H  CV     + G+  +A+    +MP   D V W  ++    Y+   ++G   +
Sbjct: 572 P--TVQHCTCVVDLLGRTGRTREAEKFIYEMPLPADGVIWGALLTACWYSMDLEMGE-KV 628

Query: 300 ARRLF 304
           A+RLF
Sbjct: 629 AQRLF 633



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 22/222 (9%)

Query: 20  LLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           LL  C T+  + Q   +H  +  T F  + H+ T L   +    C         +     
Sbjct: 444 LLHACATIGTLEQGRMVHCHLCKTSFDSSDHVGTALADMYFKCGC---------VIDAQS 494

Query: 77  AFREKKDPFL--WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
           AF     P +  W ++I   +      EAL  F  ML + V  ++ +   +L A +R GL
Sbjct: 495 AFTYVTSPNVASWTSLINGLAQNGHWLEALSQFGRMLKHHVKPNEITFLGLLMASARAGL 554

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI-RDSVSYNSMID 193
           + +G++I   +        +    C++ L  R G    A +   +M +  D V + +++ 
Sbjct: 555 VNKGMKIFYSMENFGLVPTVQHCTCVVDLLGRTGRTREAEKFIYEMPLPADGVIWGALLT 614

Query: 194 GYVKSGNIE----SARELFDSMPIRERNLISWNSVLNGYAQL 231
               S ++E     A+ LF  M  + R+  ++ ++ N YA+L
Sbjct: 615 ACWYSMDLEMGEKVAQRLF-FMGTKHRS--AYVAMSNIYAKL 653


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 200/669 (29%), Positives = 329/669 (49%), Gaps = 87/669 (13%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSP--------------------CTPLT------- 65
           +HA MI +GF    H   +L+  +  S                      T +T       
Sbjct: 35  VHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALGN 94

Query: 66  -EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL 124
            E  R IF     +   +D   +NA+I  Y+H  D   AL +F  M  +    D F+ + 
Sbjct: 95  LELGREIFNGTPLY--MRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTS 152

Query: 125 VLKACSR-LGLIEEGLQIHGLLRKVAFGS-DLFLQNCLISLYVR--------CGYLEFAR 174
           VL A    +G  ++  Q+H  + K   G     + N L+S+YV+        C  +  AR
Sbjct: 153 VLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSAR 212

Query: 175 QLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG 234
           +LFD+M  RD +++ +MI GYV++ ++  ARE+F++M   E    +WN++++GY      
Sbjct: 213 KLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMV--ENLGAAWNAMISGYVHCGC- 269

Query: 235 LQFAWQIFEKMP----ERDLISWNSMLHGCVKCG-------------------------- 264
            Q A  +  KM     + D I++ +++  C   G                          
Sbjct: 270 FQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLS 329

Query: 265 -------------KMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
                        K+D+A+ +F  MP R++++W  ++ GY   GR++ A+  F+EMP ++
Sbjct: 330 VSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKN 389

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           ++    M+ G  +NG+  + L++F  M+ + +  P D +    L+A + LG ++ G  +H
Sbjct: 390 LLTLTVMISGLAQNGFGDEGLKLFKQMRLDGF-EPCDFAFAGALTACSVLGALENGRQLH 448

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
             L    +  +   G A+I MY+KCG +E A  VF  +    +  WN+MI  L  HG G 
Sbjct: 449 AQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGV 508

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            A +L  +M +  + PD ITF  +L AC+HAGLV++G   F  M   + + P   HY  M
Sbjct: 509 KAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARM 568

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551
           VD+  RAG    AR +I+ MP +P   +W  LL+ CR + N+++G   A+ L  +   N 
Sbjct: 569 VDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQND 628

Query: 552 SSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVR 611
            +YVLLSN++A +G WND  +VR +M+++ ++K P CSWIE+E  VH F V D    +V 
Sbjct: 629 GTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVL 688

Query: 612 DIYYMLDNM 620
            +Y  L+ +
Sbjct: 689 SVYRYLEQL 697


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 175/456 (38%), Positives = 266/456 (58%), Gaps = 4/456 (0%)

Query: 168 GYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVL 225
           G L +AR +F+++    + + NS+I GY        A   +  M ++  + +  ++ S+ 
Sbjct: 26  GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 85

Query: 226 NGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWA 285
                L  G Q      +     D    N++++    CG +  A+ +FDKM  + VVSWA
Sbjct: 86  KSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWA 145

Query: 286 NMIDGYAKLGRVDIARRLFDEMPKRDVVAC-NAMMGGYVRNGYSMKALEIFDNMQCELYL 344
            MI  YA+      A +LF  M     + C N M+ G+V +    +AL +F+ MQ    +
Sbjct: 146 TMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLS-GV 204

Query: 345 HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIK 404
             D  ++  +L A   LG ++ G  +H Y+EK++  ++   G AL+DMY+KCGSIE+A++
Sbjct: 205 KGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMR 264

Query: 405 VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL 464
           VF+++ +  V  W A+I GLA+ G G  A +L  EM+   ++PD ITF G+L AC+HAGL
Sbjct: 265 VFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGL 324

Query: 465 VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
           V EG+  F  M   + ++P ++HYGCMVD+LGRAG I  A +LI++MPM P+  +   LL
Sbjct: 325 VNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLL 384

Query: 525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKK 584
           SACR + NL V E  A+ LI +D  N  +YVLLSN+++ +  W  A+++R +M ERN+KK
Sbjct: 385 SACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKK 444

Query: 585 LPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            PGCS IE+ GVVHEF   D S  Q  +IY  LD+M
Sbjct: 445 PPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDM 480



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 121/399 (30%), Positives = 200/399 (50%), Gaps = 50/399 (12%)

Query: 78  FREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
           F +  +P  F  N+II+ Y++   P++A++ + LM+  G+  D+F+   + K+C   G++
Sbjct: 35  FNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC---GVL 91

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
            EG Q+H    K+ F SD ++QN L+++Y  CG L  AR++FDKM  +  VS+ +MI  Y
Sbjct: 92  CEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAY 151

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLI 251
            +      A +LF  M I   NL  WN ++NG+ +  S  + A  +F +M     + D +
Sbjct: 152 AQWDLPHEAIKLFRRMEIAS-NLFCWNIMINGHVE-DSDYEEALSLFNEMQLSGVKGDKV 209

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEM 307
           +  S+L  C   G ++  + L   + K     DV     ++D YAK G ++ A R+F EM
Sbjct: 210 TMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEM 269

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
           P++DV+   A++ G    G  +KALE+F  MQ    + PD  + V VL+A +  G +++G
Sbjct: 270 PEKDVMTWTALIVGLAMCGQGLKALELFHEMQMS-EVKPDAITFVGVLAACSHAGLVNEG 328

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
           +A          S+  K+G+                         S++H+  M++ L   
Sbjct: 329 IAYFN-------SMPNKYGI-----------------------QPSIEHYGCMVDMLGRA 358

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNAC-AHAGLV 465
           G    A DL+  M    + PD     GLL+AC  H  LV
Sbjct: 359 GRIAEAEDLIQNM---PMAPDYFVLVGLLSACRIHGNLV 394



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 128/322 (39%), Gaps = 66/322 (20%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK----- 74
           L + C  L +  Q+H      GF  + ++   L+  +S+  C      AR +F K     
Sbjct: 84  LFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLV---SARKVFDKMVNKS 140

Query: 75  -----------------------YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLML 111
                                  +       + F WN +I  +    D +EAL +F  M 
Sbjct: 141 VVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQ 200

Query: 112 DNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLE 171
            +GV  DK + + +L AC+ LG +E G  +H  + K     D+ L   L+ +Y +CG +E
Sbjct: 201 LSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIE 260

Query: 172 FARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQL 231
            A ++F +M  +D +++ ++I G    G    A ELF  M                    
Sbjct: 261 SAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEM-------------------- 300

Query: 232 KSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR-----DVVSWAN 286
                   Q+ E  P  D I++  +L  C   G +++  A F+ MP +      +  +  
Sbjct: 301 --------QMSEVKP--DAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGC 350

Query: 287 MIDGYAKLGRVDIARRLFDEMP 308
           M+D   + GR+  A  L   MP
Sbjct: 351 MVDMLGRAGRIAEAEDLIQNMP 372


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 180/538 (33%), Positives = 295/538 (54%), Gaps = 17/538 (3%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D F W  ++  Y+   D   A  +F  M    +     S + +L A +  G  EE   +
Sbjct: 21  RDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLG----SWTALLSAFALSGHHEEAKTL 76

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
              +++     DL     ++++      +E A+  FD+M  RD V++ +M+    + G +
Sbjct: 77  FDTMQE----RDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWTAMLAANAERGQM 132

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGC 260
           E+ARE FD MP  ERNL SW S+L+ Y   +SG ++ A ++F+ MPE +L++W +ML G 
Sbjct: 133 ENARETFDQMP--ERNLFSWTSLLSAYG--RSGDVKAAGRVFDSMPEWNLVAWTAMLTGY 188

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
              G +  A+  FD MP+RD+++W  M+  YA  G +   R +F  MP+RD+++   M+ 
Sbjct: 189 SLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISWATMVA 248

Query: 321 GYVRNGYSMKALEIFDNM--QCELY--LHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
             V N    ++ E+FD M   C L   + P+  + + +L A + LG + +G  IH  + +
Sbjct: 249 ALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVAE 308

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
             F  +     AL++ Y +CG++ +A  VF+ +    V  W++MI+  A  G  + A +L
Sbjct: 309 RGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMEL 368

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
              M      PDDI F  +L AC+++G+V+     F  +    ++EP L+HY CMVD+LG
Sbjct: 369 YHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLG 428

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556
           RAG +  A +L+  MP  P  +++ T+LSAC+ Y ++  GE  A+ +  +D  NSS Y+ 
Sbjct: 429 RAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPENSSPYIT 488

Query: 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           L+N+++      DA R+R +M+ER +KK PGCSWIE+   VHEF   DK   Q  +IY
Sbjct: 489 LANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQRDEIY 546



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 185/419 (44%), Gaps = 50/419 (11%)

Query: 235 LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKL 294
           ++ A QIF+ + +RD  SW  ML    + G + +A+ +FD+MP+  + SW  ++  +A  
Sbjct: 8   VERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTALLSAFALS 67

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
           G  + A+ LFD M +RD++A   M+           A   FD M        D  +   +
Sbjct: 68  GHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMP-----ERDLVAWTAM 122

Query: 355 LSAIAQLGHIDKG-VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
           L+A A+ G ++       +  E++ FS       +L+  Y + G ++ A +VF+ + + +
Sbjct: 123 LAANAERGQMENARETFDQMPERNLFSWT-----SLLSAYGRSGDVKAAGRVFDSMPEWN 177

Query: 414 VDHWNAMINGLAIHG---LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470
           +  W AM+ G ++ G     + AFD + E        D I +T +L+A A  G ++    
Sbjct: 178 LVAWTAMLTGYSLSGDVVRAKRAFDSMPER-------DLIAWTAMLSAYAFNGHLRYTRE 230

Query: 471 CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP--------MEPNDVIWRT 522
            F+ M      E +L  +  MV  L     +E ++ L + MP        M PN V + T
Sbjct: 231 IFQRMP-----ERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFIT 285

Query: 523 LLSACRNYENLNVGEPVAKHLI--GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580
           LL AC     L  G  +   +   G D+    S  L+ N +   G   DA+ V   M+ R
Sbjct: 286 LLDACSFLGALAEGRKIHAAVAERGFDTDLVVSNALV-NFYGRCGALGDAKIVFDGMRRR 344

Query: 581 NLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPD-----SVATSCTHYG 634
           ++      SW     ++  F  R +    +   + ML     PD     SV  +C++ G
Sbjct: 345 DV-----ISW---SSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSG 395


>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 823

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 180/511 (35%), Positives = 279/511 (54%), Gaps = 74/511 (14%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG----VSVDKFSASLVLKACSRLGLIE 136
           + D F++N +I+  +H   P++A+ ++  ML  G    V  DK +   VL+AC+ +G  +
Sbjct: 40  RPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGD 99

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G+Q+H  + K    SD F++                               N++I  + 
Sbjct: 100 TGVQVHAHVVKAGCESDAFVK-------------------------------NALIGMHA 128

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
             GN+  A  LFD    R R                                D ++W++M
Sbjct: 129 SCGNLGIAAALFDG---RAR-------------------------------EDAVAWSAM 154

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
           + GC + G +  A+ LFD+ P +D+VSW  MI  YAK G + +AR LFD++P+RDVV+ N
Sbjct: 155 ITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWN 214

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
            M+ GYVR G  + ALE+F+ MQ  +   PD  +++ +LSA A  G +D G  +H  L  
Sbjct: 215 VMISGYVRCGSHLHALELFEQMQ-RMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLS- 272

Query: 377 DQFSLNGKH---GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
           D FS NG     G ALIDMY+KCGS+++A +VF  + D  V  WN+++ GLA+HG    +
Sbjct: 273 DMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLES 332

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493
            D+  +M +  + PD+ITF  +L AC+H G+V +G   F LM+  +++EP ++HYGCMVD
Sbjct: 333 IDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVD 392

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS 553
           +LGRAG ++ A   I+ M  EPN VIWRTLLSACR +  + + +   + L+   +  S  
Sbjct: 393 MLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDESGD 452

Query: 554 YVLLSNMFAGLGMWNDARRVRSMMKERNLKK 584
           YVLLSN++A +G W  + ++R +M +  + K
Sbjct: 453 YVLLSNIYASVGEWFGSEKMRKLMDDSGVNK 483


>gi|413938708|gb|AFW73259.1| hypothetical protein ZEAMMB73_606431 [Zea mays]
          Length = 488

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 235/369 (63%), Gaps = 1/369 (0%)

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           ++ S++    + G++ DA+ +FD M  R VV+W  ++D   + G +D A  +F +MP+R+
Sbjct: 101 AFTSLIRAYARLGRVCDARKVFDGMADRTVVTWNVLLDALIRDGDLDAAWEVFVKMPQRN 160

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
            V+ N ++ G+ RNG++  A+++F  M     L PD+A++V  +SA+  +G +  G + H
Sbjct: 161 AVSWNTIISGFARNGWAPVAVDLFIEMTVAYGLAPDEATMVGFVSAVRDIGLLAIGKSAH 220

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
            Y+ + +FSL+G  GVAL+ MY++CGS+  A   F  +   +V+HW ++I G A HG  E
Sbjct: 221 GYVLRREFSLDGPLGVALVSMYTRCGSMGAAHSCFLSVTTKNVEHWTSLIAGFAAHGQPE 280

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            A  L +EM ++ IEP+ +TF  +L+AC+H GLV EG   F+LMR +  + P +QHYGC+
Sbjct: 281 NALRLFVEMRQVGIEPNGVTFVAVLSACSHGGLVDEGFKYFDLMRSM-GIRPMIQHYGCL 339

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551
           VD+LGRAG ++ A NL  ++P +P  VIW +LL+ACR++ N+ + E  A  L     S+ 
Sbjct: 340 VDLLGRAGFLKEAFNLASNLPEDPGFVIWSSLLAACRSHGNVEMAELTASKLAEAKPSHG 399

Query: 552 SSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVR 611
           SSYVLLSN +A    W D++R R  M+E  + K PG SWIE++G VH F   DK  ++  
Sbjct: 400 SSYVLLSNTYARAEQWEDSKRTRRRMEEHRVAKKPGLSWIEIDGSVHSFATADKLHIESE 459

Query: 612 DIYYMLDNM 620
            IY+ML+++
Sbjct: 460 GIYHMLEDL 468



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 152/324 (46%), Gaps = 20/324 (6%)

Query: 125 VLKACSRL-GLIEEGLQIHGLLRKVAFG---SDLFLQNCLISLYVRCGYLEFARQLFDKM 180
            L AC+RL   + E  QIH LL K       S +     LI  Y R G +  AR++FD M
Sbjct: 66  ALAACARLPSAVAEAEQIHALLVKSGGSRAVSHVQAFTSLIRAYARLGRVCDARKVFDGM 125

Query: 181 GIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQ 240
             R  V++N ++D  ++ G++++A E+F  MP  +RN +SWN++++G+A+       A  
Sbjct: 126 ADRTVVTWNVLLDALIRDGDLDAAWEVFVKMP--QRNAVSWNTIISGFAR-NGWAPVAVD 182

Query: 241 IFEKMP--------ERDLISWNSMLH--GCVKCGKMDDAQALFDKMPKRDVVSWANMIDG 290
           +F +M         E  ++ + S +   G +  GK      L  +      +  A ++  
Sbjct: 183 LFIEMTVAYGLAPDEATMVGFVSAVRDIGLLAIGKSAHGYVLRREFSLDGPLGVA-LVSM 241

Query: 291 YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
           Y + G +  A   F  +  ++V    +++ G+  +G    AL +F  M+ ++ + P+  +
Sbjct: 242 YTRCGSMGAAHSCFLSVTTKNVEHWTSLIAGFAAHGQPENALRLFVEMR-QVGIEPNGVT 300

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI- 409
            V VLSA +  G +D+G      +         +H   L+D+  + G ++ A  +   + 
Sbjct: 301 FVAVLSACSHGGLVDEGFKYFDLMRSMGIRPMIQHYGCLVDLLGRAGFLKEAFNLASNLP 360

Query: 410 EDGSVDHWNAMINGLAIHGLGELA 433
           ED     W++++     HG  E+A
Sbjct: 361 EDPGFVIWSSLLAACRSHGNVEMA 384



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 106/232 (45%), Gaps = 17/232 (7%)

Query: 81  KKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           +++   WN II  ++ +G  P    +   + +  G++ D+ +    + A   +GL+  G 
Sbjct: 158 QRNAVSWNTIISGFARNGWAPVAVDLFIEMTVAYGLAPDEATMVGFVSAVRDIGLLAIGK 217

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
             HG + +  F  D  L   L+S+Y RCG +  A   F  +  ++   + S+I G+   G
Sbjct: 218 SAHGYVLRREFSLDGPLGVALVSMYTRCGSMGAAHSCFLSVTTKNVEHWTSLIAGFAAHG 277

Query: 200 NIESARELFDSMPIR--ERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWN 254
             E+A  LF  M     E N +++ +VL+  +    +  G ++ + +   M  R +I   
Sbjct: 278 QPENALRLFVEMRQVGIEPNGVTFVAVLSACSHGGLVDEGFKY-FDLMRSMGIRPMIQH- 335

Query: 255 SMLHGCV-----KCGKMDDAQALFDKMPK-RDVVSWANMIDGYAKLGRVDIA 300
              +GC+     + G + +A  L   +P+    V W++++      G V++A
Sbjct: 336 ---YGCLVDLLGRAGFLKEAFNLASNLPEDPGFVIWSSLLAACRSHGNVEMA 384


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 197/636 (30%), Positives = 321/636 (50%), Gaps = 89/636 (13%)

Query: 65  TEFARY------IFFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVS 116
           T+ ARY      I    H F +   P   LWN +I+TY+     ++++ ++  ML  GV+
Sbjct: 45  TQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVT 104

Query: 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQL 176
              F+   +LKACS L  ++ G  IH     +    DL++   L+ +Y +CG+L  A+ L
Sbjct: 105 PTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTL 164

Query: 177 FDKMGI--RDSVSYNSMIDGYV----------------KSGNIESARELFDSMP------ 212
           F+ +    RD V++N+MI  +                 ++G   ++  L   +P      
Sbjct: 165 FNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQAN 224

Query: 213 ------------IRE---RNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
                       IR     N++   ++L+ YA+    L +A +IF  + +++ + W++M+
Sbjct: 225 ALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHL-LFYARKIFNTVNKKNDVCWSAMI 283

Query: 258 HGCVKCGKMDDAQALFDKM---------P----------------KR------------- 279
            G V    + DA AL+D M         P                KR             
Sbjct: 284 GGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGM 343

Query: 280 --DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
             D     ++I  YAK G +D A    DEM  +D V+ +A++ G V+NGY+ KAL IF  
Sbjct: 344 DLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQ 403

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
           MQ    + P   +++ +L A + L  +  G   H Y     F+ +     A+IDMYSKCG
Sbjct: 404 MQSS-GIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCG 462

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            I  + ++F+++++  +  WN MI G  IHGL   A  L  E++ L ++PDD+T   +L+
Sbjct: 463 KITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLS 522

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
           AC+H+GLV EG   F  M +   ++P + HY CMVD+L RAG+++ A   I+ MP  PN 
Sbjct: 523 ACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNV 582

Query: 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
            IW  LL+ACR ++N+ +GE V+K +  +    + ++VL+SN+++ +G W+DA  +RS+ 
Sbjct: 583 RIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQ 642

Query: 578 KERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
           +    KK PGCSW+E+ GV+H F    +S  Q   I
Sbjct: 643 RHHGYKKSPGCSWVEISGVIHVFIGGHQSHPQSASI 678



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 128/306 (41%), Gaps = 46/306 (15%)

Query: 12  NSTQSTL-LLLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF 67
           N T +TL  +LR C  L D+    ++H  MI +G   +T +   L++ ++   C  +   
Sbjct: 309 NPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAK--CGIMDNA 366

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
             ++          KD   ++AII         ++AL++F  M  +G++    +   +L 
Sbjct: 367 VGFL-----DEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLP 421

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           ACS L  ++ G   HG      F +D  + N +I +Y +CG +  +R++FD+M  RD +S
Sbjct: 422 ACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIIS 481

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
           +N+MI GY   G    A  LF  +                            Q     P 
Sbjct: 482 WNTMIIGYGIHGLCVEALSLFQEL----------------------------QALGLKP- 512

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMP-----KRDVVSWANMIDGYAKLGRVDIARR 302
            D ++  ++L  C   G + + +  F  M      K  +  +  M+D  A+ G +D A  
Sbjct: 513 -DDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYT 571

Query: 303 LFDEMP 308
               MP
Sbjct: 572 FIQRMP 577


>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
          Length = 1287

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 183/564 (32%), Positives = 301/564 (53%), Gaps = 46/564 (8%)

Query: 99  DPKEALVMFCLMLDNGVSVDKFSASLVLK--ACSRLGLIEEGLQIHGLLRKVAFGSDLFL 156
           DP    V+F  M    V  D F+   + K  + SR   +   +     LR +   +  F+
Sbjct: 24  DPDIPFVLFRRMRRAAVRPDGFTFHFLFKCSSSSRPRALLCTMLHAACLRTMLPSAAPFV 83

Query: 157 QNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRER 216
            N LI +Y   G     R+ FD++ ++D+VS+  +I G  K G +  AR L    P+R+ 
Sbjct: 84  ANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRD- 142

Query: 217 NLISWNSVLNGYAQLKSGLQFAWQIFEKMPER----DLISWNSMLHGC------------ 260
            +ISW S++  Y++     + A   F+ M       D ++   +L  C            
Sbjct: 143 -VISWTSLIAAYSRADRAKE-AVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSL 200

Query: 261 -----------------------VKCGKMDDAQALFDKMPK-RDVVSWANMIDGYAKLGR 296
                                   KCG    A+ +FD + + R   SW  +IDGY K G 
Sbjct: 201 HLLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGH 260

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           VD+AR LFD+M  RD++  N+M+ GY+ +G   +AL +F NM+    L  D+ ++V +LS
Sbjct: 261 VDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMR-RHDLRVDNFTVVSLLS 319

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
           A A LG + +G A+H  +E      +   G AL+DMY KCG +  A  VF+++    V  
Sbjct: 320 ACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHA 379

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           W AMI GLA +G+G+   +   +M     +P+ +++  +L AC+H+ L+ EG L F+ MR
Sbjct: 380 WTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMR 439

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
            ++ + P+++HYGCM+D+LGR+G ++ A +L++ MPM+PN VIW ++LSACR ++ +++ 
Sbjct: 440 ILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILSACRVHKRIDLA 499

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
           +  A+HL+ ++    + YV L N+      W DA ++R +M+ER +KK  G S + + G 
Sbjct: 500 QCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKIRMLMEERQVKKTAGYSSVTVAGQ 559

Query: 597 VHEFFVRDKSRLQVRDIYYMLDNM 620
           VH+F V DKS  ++ +I  ML+ +
Sbjct: 560 VHKFVVSDKSHPRILEIIAMLEEI 583



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 151/594 (25%), Positives = 268/594 (45%), Gaps = 71/594 (11%)

Query: 20   LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASF--SSSPCTPLTEFARYIFFKYHA 77
            +L  C T   + Q+H R++  G   N  + + LV  +    SP   L+ F          
Sbjct: 741  ILGVCSTYEAL-QLHGRVLALGLCCNPFVGSALVNHYMHVESPHAALSLFRELPL----- 794

Query: 78   FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLG-LIE 136
                ++  + N +++   +    +E +  F  M    + ++  S    +K C + G  +E
Sbjct: 795  ----QNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLE 850

Query: 137  EGLQIHGLLRKVAF-GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
            +G Q+HG++ K  +  S++FL N L+ LY   G               DSV         
Sbjct: 851  QGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIG---------------DSV--------- 886

Query: 196  VKSGNIESARELFDSMPIRERNLISWNSVLNGYA---QLKSGLQFAWQIF--EKMPE-RD 249
                  ++ + L D   I   ++ISWNS+L+ YA    +K  + +  Q+    KMP  R 
Sbjct: 887  ------DTVKALND---ILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSVRS 937

Query: 250  LISWNSMLHGCVKCGKMDDAQ------ALFDKM--PKRDVVSWANMIDGYAKLGRVDIAR 301
             +S  ++       GK  D Q       +  K+      V     +ID Y K    D + 
Sbjct: 938  FVSLLAL------SGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSL 991

Query: 302  RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
             +F+E+P   +  CN+++   +       ALEI   M  E  + PDD +    + AI+  
Sbjct: 992  AIFNEIPSIALECCNSLITSSLGCNMFDAALEILHCMIVE-GVTPDDVTFSATMKAISLS 1050

Query: 362  GH--IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
                +     +H  L K  F ++     +LI  Y+  G + ++  +FE + D +V  + A
Sbjct: 1051 ASPSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTA 1110

Query: 420  MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
            +I+  A +G G  A +L  +M    ++PD++TF   +  C  AG+ +EG L  ELMR   
Sbjct: 1111 IISACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASR 1170

Query: 480  KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPV 539
            +L+P+ +H+ CMV++L R G ++ A  ++E  P+      W +LL +C+ +    +G+  
Sbjct: 1171 ELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRA 1230

Query: 540  AKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
            A  LI +   + ++ + +SN F  +G    A R++ M   + +KK  G S IE+
Sbjct: 1231 ANMLIDVGRKDPATTLQVSNFFNDIGDRETALRIKEMTNVKEVKK-SGHSLIEV 1283



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 124/251 (49%), Gaps = 23/251 (9%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           E +D   +N++I  Y H    +EAL++F  M  + + VD F+   +L AC+ LG + +G 
Sbjct: 272 EVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGR 331

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
            +H  +      +D+++   L+ +Y++CG +  A  +F +MG RD  ++ +MI G   +G
Sbjct: 332 ALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNG 391

Query: 200 NIESARELFDSMPIR--ERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWN 254
             ++  E F  M     + N +S+ +VL   +    L  G  +    F++M  R L + +
Sbjct: 392 MGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLY----FDEM--RILYNIH 445

Query: 255 SML--HGCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIAR----R 302
             +  +GC+     + G +D+A  L   MP + + V WA+++       R+D+A+     
Sbjct: 446 PQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILSACRVHKRIDLAQCAAEH 505

Query: 303 LFDEMPKRDVV 313
           L    P  D V
Sbjct: 506 LLKIEPDEDAV 516


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 158/397 (39%), Positives = 250/397 (62%), Gaps = 6/397 (1%)

Query: 222 NSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV 281
           N+ + GY      +  A ++F+ MP RD +S+NSM+HG    G +  AQ LF+++     
Sbjct: 50  NAFIQGYCSAGR-VTDARRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQRLFERVLAPTP 108

Query: 282 VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
           V+W +M+ G+ + G V+ ARR+F+EMP+RD+V+ NAM+ G V N   ++AL +F  M  E
Sbjct: 109 VTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEE 168

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIEN 401
            ++ P+  ++V VLSA    G ++ G  +H ++EK +   +   G AL+DMY+KCG++E 
Sbjct: 169 GFV-PNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVEL 227

Query: 402 AIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEME-RLSIEPDDITFTGLLNACA 460
           A++VF  +   +   WNAMINGLA++G    A D+  +ME   ++ PD++TF G+L AC+
Sbjct: 228 ALEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACS 287

Query: 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIW 520
           HAG V  G   F  + + + +E  L+HY CMVD+L R+GH++ A  LI +MPM+P+ V+W
Sbjct: 288 HAGFVDAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVW 347

Query: 521 RTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580
           R LL  CR ++N+ + E V      M+++ S  +VLLSN++A +G WN    VR  M+ +
Sbjct: 348 RALLGGCRLHKNVKMAENVISE---MEATCSGDHVLLSNLYAAVGRWNGVEDVRRTMRSK 404

Query: 581 NLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
            ++K+PGCS +E++G +HEF   DKS     DI+  L
Sbjct: 405 GIEKIPGCSSVEMDGSIHEFISGDKSHPSYDDIHAKL 441



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 169/344 (49%), Gaps = 46/344 (13%)

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
            +H +  K+ F       N  I  Y   G +  AR++FD M  RD+VS+NSMI GY  SG
Sbjct: 32  SLHAVCTKLGFLLCTRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSG 91

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
           ++ SA+ LF+   +     ++W S++ G+ +    ++ A ++FE+MPERDL+SWN+M+ G
Sbjct: 92  DVGSAQRLFER--VLAPTPVTWTSMVAGFCR-AGDVESARRVFEEMPERDLVSWNAMISG 148

Query: 260 CVKCGKMDDAQALFDKM------PKRDVV----------------SWAN----------- 286
           CV      +A  LF  M      P R  V                 W +           
Sbjct: 149 CVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWD 208

Query: 287 ------MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQC 340
                 ++D YAK G V++A  +F  +  R+    NAM+ G   NGYS KAL++F  M+ 
Sbjct: 209 EFLGTALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMEL 268

Query: 341 ELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL--EKDQFSLNGKHGVALIDMYSKCGS 398
              + PD+ + V VL A +  G +D G   H Y   +K    L  +H   ++D+ ++ G 
Sbjct: 269 NGTVAPDEVTFVGVLLACSHAGFVDAGKE-HFYTIPQKYGVELILEHYACMVDLLARSGH 327

Query: 399 IENAIKVFEQIE-DGSVDHWNAMINGLAIHGLGELAFDLLMEME 441
           ++ A K+  ++     V  W A++ G  +H   ++A +++ EME
Sbjct: 328 LQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMAENVISEME 371



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 125/278 (44%), Gaps = 42/278 (15%)

Query: 50  TKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCL 109
           T +VA F  +      E AR +F +      ++D   WNA+I        P EAL +F  
Sbjct: 112 TSMVAGFCRAG---DVESARRVFEEM----PERDLVSWNAMISGCVGNRLPVEALCLFRW 164

Query: 110 MLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY 169
           M++ G   ++ +   VL AC+  G +E G  +H  + K     D FL   L+ +Y +CG 
Sbjct: 165 MMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGA 224

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA 229
           +E A ++F  +  R++ ++N+MI+G   +G    A ++F  M             LNG  
Sbjct: 225 VELALEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQME------------LNGTV 272

Query: 230 QLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS-----W 284
                              D +++  +L  C   G +D  +  F  +P++  V      +
Sbjct: 273 A-----------------PDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILEHY 315

Query: 285 ANMIDGYAKLGRVDIARRLFDEMP-KRDVVACNAMMGG 321
           A M+D  A+ G +  A +L  EMP K DVV   A++GG
Sbjct: 316 ACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGG 353



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 98/230 (42%), Gaps = 26/230 (11%)

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
           ++H    K  F L  +   A I  Y   G + +A +VF+ +       +N+MI+G A+ G
Sbjct: 32  SLHAVCTKLGFLLCTRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSG 91

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
               A  L    ER+ + P  +T+T ++     AG V+     FE M      E +L  +
Sbjct: 92  DVGSAQRLF---ERV-LAPTPVTWTSMVAGFCRAGDVESARRVFEEMP-----ERDLVSW 142

Query: 489 GCMVD-ILGRAGHIEAA---RNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE----PVA 540
             M+   +G    +EA    R ++E+    PN     ++LSAC     L  G+     V 
Sbjct: 143 NAMISGCVGNRLPVEALCLFRWMMEE-GFVPNRGTVVSVLSACTGAGALETGKWVHVFVE 201

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSW 590
           K  +  D    ++ V   +M+A  G    A  V + ++ RN      C+W
Sbjct: 202 KKRLRWDEFLGTALV---DMYAKCGAVELALEVFTGLRARNT-----CTW 243


>gi|242082329|ref|XP_002445933.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
 gi|241942283|gb|EES15428.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
          Length = 498

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 167/438 (38%), Positives = 259/438 (59%), Gaps = 9/438 (2%)

Query: 85  FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLG-LIEEGLQIHG 143
           FL N +I   +    P+ +   F  +L +G   D F+   ++K+ SRL      G Q++ 
Sbjct: 58  FLHNLLIHASAASPSPRLSFAAFSSLLRSGYLPDHFTFPPLVKSASRLSSFPRTGAQVYA 117

Query: 144 LLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG-IRDSVSYNSMIDGYVKSGNIE 202
              +  F +D F+ N L+++Y         R +F+    + D VS+N+++ GY K G I 
Sbjct: 118 QAARRGFLADTFVVNSLLAMYAAFRDTASMRAVFESCAEVADVVSWNTVVFGYAKCGEIG 177

Query: 203 SARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE--RDLISWNSMLHGC 260
           +AR +FD MP   RN +SW+ ++  YA     L  A ++F++MP   R++I+WN M+ G 
Sbjct: 178 NARRVFDEMP--HRNGVSWSVMVGAYAA-AGELDVAREMFDRMPAIGRNIITWNLMVTGF 234

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
            + G +  A+ +FD+MP R++VSW  M+ GYA  G +D+AR LFD MP++DVV+   M+ 
Sbjct: 235 GRHGLLPLARKMFDEMPIRNIVSWNAMLRGYAMNGEMDVARELFDVMPEKDVVSWTCMIS 294

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           GY + G   + LE+F  MQ    + P++ ++V VLSA A L  +++G   H +++K +  
Sbjct: 295 GYAQAGRYAQTLELFRTMQSHGDIRPNEVTMVSVLSACAHLTALEEGRWAHVFIDKHKMV 354

Query: 381 LNGKH--GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
           L+ +   G ALIDMY+KCG  + A K+F  ++  +V  WNA+I GLA++       D+  
Sbjct: 355 LDNEFNLGAALIDMYAKCGRTDLATKIFHSLDQKNVSAWNALITGLAVNSDARRCIDVFE 414

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
           +M+    +PDDITF  +L ACAHAGLV EG   F+ M     ++PEL+HYGCMVD+LGRA
Sbjct: 415 QMKMSEEKPDDITFVSVLTACAHAGLVDEGRQYFQSMSSACGVQPELKHYGCMVDLLGRA 474

Query: 499 GHIEAARNLIEDMPMEPN 516
           G ++ A  LI  MPM P+
Sbjct: 475 GLLDEAEELIRGMPMAPD 492



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 144/336 (42%), Gaps = 67/336 (19%)

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
           DVV+ N ++ GY + G    A  +FD M      H +  S  +++ A A  G +D  VA 
Sbjct: 159 DVVSWNTVVFGYAKCGEIGNARRVFDEMP-----HRNGVSWSVMVGAYAAAGELD--VAR 211

Query: 371 HRYLEKDQFSLNGKHGVA---LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
             +   D+    G++ +    ++  + + G +  A K+F+++   ++  WNAM+ G A++
Sbjct: 212 EMF---DRMPAIGRNIITWNLMVTGFGRHGLLPLARKMFDEMPIRNIVSWNAMLRGYAMN 268

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           G  ++A +L   M     E D +++T +++  A AG   + L  F  M          Q 
Sbjct: 269 GEMDVARELFDVMP----EKDVVSWTCMISGYAQAGRYAQTLELFRTM----------QS 314

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE----PVAKHL 543
           +G   DI                    PN+V   ++LSAC +   L  G      + KH 
Sbjct: 315 HG---DI-------------------RPNEVTMVSVLSACAHLTALEEGRWAHVFIDKHK 352

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVR 603
           + +D+  +    L+ +M+A  G  + A ++   + ++N+      +W     ++    V 
Sbjct: 353 MVLDNEFNLGAALI-DMYAKCGRTDLATKIFHSLDQKNVS-----AW---NALITGLAVN 403

Query: 604 DKSRLQVRDIYYMLDNMWTPD-----SVATSCTHYG 634
             +R  +     M  +   PD     SV T+C H G
Sbjct: 404 SDARRCIDVFEQMKMSEEKPDDITFVSVLTACAHAG 439



 Score = 40.4 bits (93), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 5/123 (4%)

Query: 65  TEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL 124
           T+ A  IF   H+  ++K+   WNA+I   +   D +  + +F  M  +    D  +   
Sbjct: 375 TDLATKIF---HSL-DQKNVSAWNALITGLAVNSDARRCIDVFEQMKMSEEKPDDITFVS 430

Query: 125 VLKACSRLGLIEEGLQ-IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183
           VL AC+  GL++EG Q    +        +L    C++ L  R G L+ A +L   M + 
Sbjct: 431 VLTACAHAGLVDEGRQYFQSMSSACGVQPELKHYGCMVDLLGRAGLLDEAEELIRGMPMA 490

Query: 184 DSV 186
             V
Sbjct: 491 PDV 493


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 172/547 (31%), Positives = 298/547 (54%), Gaps = 39/547 (7%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           ++   W  +I  +      ++A+ +F  M+ +G   D+F+ S V+ AC+ +GL+  G Q 
Sbjct: 108 RNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQF 167

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H L+ K     D+ +   L+ +Y +C                            V  G++
Sbjct: 168 HCLVMKSGLDLDVCVGCSLVDMYAKC----------------------------VADGSV 199

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----ISWNSML 257
           + AR++FD MP+   N++SW +++ GY Q     + A ++F +M +  +     +++S+L
Sbjct: 200 DDARKVFDRMPVH--NVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVL 257

Query: 258 HGCVKCGKM---DDAQALFDKMPKRDVVSWAN-MIDGYAKLGRVDIARRLFDEMPKRDVV 313
             C     +   +   AL  KM    +    N +I  Y++ G ++ AR+ FD + ++++V
Sbjct: 258 KACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLV 317

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
           + N ++  Y ++  S +A E+F+ ++       +  +   +LS  + +G I KG  IH  
Sbjct: 318 SYNTIVNAYAKSLNSEEAFELFNEIE-GAGTGVNAFTFASLLSGASSIGAIGKGEQIHSR 376

Query: 374 LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
           + K  F  N     ALI MYS+CG+IE A +VF ++ DG+V  W +MI G A HG    A
Sbjct: 377 ILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRA 436

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493
            +   +M    + P+++T+  +L+AC+H GL+ EGL  F+ M+  H + P ++HY C+VD
Sbjct: 437 LETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVD 496

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS 553
           +LGR+GH+E A  L+  MP + + ++ RT L ACR + N+++G+  A+ ++  D  + ++
Sbjct: 497 LLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAA 556

Query: 554 YVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
           Y+LLSN+ A  G W +   +R  MKERNL K  GCSWIE+E  VH+F+V D S  Q ++I
Sbjct: 557 YILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEI 616

Query: 614 YYMLDNM 620
           Y  LD +
Sbjct: 617 YDELDQL 623



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 135/516 (26%), Positives = 239/516 (46%), Gaps = 49/516 (9%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           K+D   W+A+I  Y++     EA+  F  ML+ G   +++  + V +ACS    I  G  
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 141 IHGLLRKVA-FGSDLFLQNCLISLYVRC-GYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
           I G L K   F SD+ +   LI ++V+  G LE A ++FD+M  R+ V++  MI  + + 
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 199 GNIESARELFDSMPIRER--NLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDL--- 250
           G    A +LF  M +     +  + + V++  A+   L  G QF   + +   + D+   
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVG 183

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
            S   M   CV  G +DDA+ +FD+MP  +V+SW  +I GY + G  D            
Sbjct: 184 CSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCD------------ 231

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
                              +A+E+F  M  +  + P+  +   VL A A L  I  G  +
Sbjct: 232 ------------------REAIELFLEM-VQGQVKPNHFTFSSVLKACANLSDIWLGEQV 272

Query: 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
           +  + K + +     G +LI MYS+CG++ENA K F+ + + ++  +N ++N  A     
Sbjct: 273 YALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNS 332

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK--LEPELQHY 488
           E AF+L  E+E      +  TF  LL+  +  G + +G    ++  RI K   +  L   
Sbjct: 333 EEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGE---QIHSRILKSGFKSNLHIC 389

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG-EPVAKHLIGMD 547
             ++ +  R G+IEAA  +  +M  + N + W ++++    +       E   K L    
Sbjct: 390 NALISMYSRCGNIEAAFQVFNEMG-DGNVISWTSMITGFAKHGFATRALETFHKMLEAGV 448

Query: 548 SSNSSSYVLLSNMFAGLGMWNDA-RRVRSMMKERNL 582
           S N  +Y+ + +  + +G+ ++  +  +SM  E  +
Sbjct: 449 SPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGI 484



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 110/225 (48%), Gaps = 17/225 (7%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFL--WNA 89
           QIH+R++ +GF  N H+   L++ +S   C  +          +  F E  D  +  W +
Sbjct: 372 QIHSRILKSGFKSNLHICNALISMYSR--CGNIEA-------AFQVFNEMGDGNVISWTS 422

Query: 90  IIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKV 148
           +I  ++ HG   + AL  F  ML+ GVS ++ +   VL ACS +GLI EGL+ H    KV
Sbjct: 423 MITGFAKHGFATR-ALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLK-HFKSMKV 480

Query: 149 AFGSDLFLQN--CLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMIDGYVKSGNIESAR 205
             G    +++  C++ L  R G+LE A +L + M  + D++   + +      GN++  +
Sbjct: 481 EHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGK 540

Query: 206 ELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL 250
              + +  ++ +  +   +L+         +   +I +KM ER+L
Sbjct: 541 HAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNL 585


>gi|15226879|ref|NP_181048.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099187|sp|O64766.1|PP185_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g35030, mitochondrial; Flags: Precursor
 gi|3033399|gb|AAC12843.1| hypothetical protein [Arabidopsis thaliana]
 gi|209414526|gb|ACI46503.1| At2g35030 [Arabidopsis thaliana]
 gi|330253957|gb|AEC09051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 183/536 (34%), Positives = 294/536 (54%), Gaps = 39/536 (7%)

Query: 118 DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLF 177
           D  + + V+    +LG + E  +   L  +V    ++     ++S Y+R   L  A  LF
Sbjct: 76  DVVTWTHVITGYIKLGDMREARE---LFDRVDSRKNVVTWTAMVSGYLRSKQLSIAEMLF 132

Query: 178 DKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF 237
            +M  R+ VS+N+MIDGY +SG I+ A ELFD MP  ERN++SWNS++    Q +  +  
Sbjct: 133 QEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMP--ERNIVSWNSMVKALVQ-RGRIDE 189

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
           A  +FE+MP RD++SW +M+ G  K GK+D+A+ LFD MP+R+++SW  MI GYA+  R+
Sbjct: 190 AMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRI 249

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRN--------------------------GY---- 327
           D A +LF  MP+RD  + N M+ G++RN                          GY    
Sbjct: 250 DEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENK 309

Query: 328 -SMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG 386
            + +AL +F  M  +  + P+  + V +LSA + L  + +G  IH+ + K     N    
Sbjct: 310 ENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVT 369

Query: 387 VALIDMYSKCGSIENAIKVFEQ--IEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS 444
            AL++MYSK G +  A K+F+   +    +  WN+MI   A HG G+ A ++  +M +  
Sbjct: 370 SALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHG 429

Query: 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504
            +P  +T+  LL AC+HAGLV++G+  F+ + R   L    +HY C+VD+ GRAG ++  
Sbjct: 430 FKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRLKDV 489

Query: 505 RNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL 564
            N I       +   +  +LSAC  +  +++ + V K ++   S ++ +YVL+SN++A  
Sbjct: 490 TNFINCDDARLSRSFYGAILSACNVHNEVSIAKEVVKKVLETGSDDAGTYVLMSNIYAAN 549

Query: 565 GMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           G   +A  +R  MKE+ LKK PGCSW+++    H F V DKS  Q   +  +L ++
Sbjct: 550 GKREEAAEMRMKMKEKGLKKQPGCSWVKVGKQNHLFVVGDKSHPQFEALDSILSDL 605



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 213/370 (57%), Gaps = 18/370 (4%)

Query: 160 LISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLI 219
           LI    + G +  AR+LFD +  RD V++  +I GY+K G++  ARELFD +  R +N++
Sbjct: 52  LIGELCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSR-KNVV 110

Query: 220 SWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR 279
           +W ++++GY + K  L  A  +F++MPER+++SWN+M+ G  + G++D A  LFD+MP+R
Sbjct: 111 TWTAMVSGYLRSKQ-LSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPER 169

Query: 280 DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQ 339
           ++VSW +M+    + GR+D A  LF+ MP+RDVV+  AM+ G  +NG   +A  +FD M 
Sbjct: 170 NIVSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMP 229

Query: 340 CELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL-EKDQFSLNGKHGVALIDMYSKCGS 398
                  +  S   +++  AQ   ID+   + + + E+D  S N      +I  + +   
Sbjct: 230 -----ERNIISWNAMITGYAQNNRIDEADQLFQVMPERDFASWN-----TMITGFIRNRE 279

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMER-LSIEPDDITFTGLLN 457
           +  A  +F+++ + +V  W  MI G   +   E A ++  +M R  S++P+  T+  +L+
Sbjct: 280 MNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILS 339

Query: 458 ACAH-AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPN 516
           AC+  AGLV EG    +L+ +    + E+     ++++  ++G + AAR + ++  +   
Sbjct: 340 ACSDLAGLV-EGQQIHQLISKSVHQKNEIV-TSALLNMYSKSGELIAARKMFDNGLVCQR 397

Query: 517 DVI-WRTLLS 525
           D+I W ++++
Sbjct: 398 DLISWNSMIA 407



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 109/462 (23%), Positives = 224/462 (48%), Gaps = 67/462 (14%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           WN +I  Y+      +AL +F  M +  +     S + ++KA  + G I+E + +   + 
Sbjct: 143 WNTMIDGYAQSGRIDKALELFDEMPERNI----VSWNSMVKALVQRGRIDEAMNLFERMP 198

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           +     D+     ++    + G ++ AR+LFD M  R+ +S+N+MI GY ++  I+ A +
Sbjct: 199 R----RDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQ 254

Query: 207 LFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKM 266
           LF  MP  ER+  SWN+++ G+ + +  +  A  +F++MPE+++ISW +M+ G V+  + 
Sbjct: 255 LFQVMP--ERDFASWNTMITGFIRNRE-MNKACGLFDRMPEKNVISWTTMITGYVENKEN 311

Query: 267 DDAQALFDKM-----------------------------------------PKRDVVSWA 285
           ++A  +F KM                                          K ++V+ A
Sbjct: 312 EEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSA 371

Query: 286 NMIDGYAKLGRVDIARRLFDE--MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELY 343
            +++ Y+K G +  AR++FD   + +RD+++ N+M+  Y  +G+  +A+E+++ M+   +
Sbjct: 372 -LLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGF 430

Query: 344 LHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ-FSLNGKHGVALIDMYSKCGSIENA 402
             P   + + +L A +  G ++KG+   + L +D+   L  +H   L+D+  + G +++ 
Sbjct: 431 -KPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRLKD- 488

Query: 403 IKVFEQIEDG--SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI-TFTGLLNAC 459
           +  F   +D   S   + A+++   +H    +A +++ ++  L    DD  T+  + N  
Sbjct: 489 VTNFINCDDARLSRSFYGAILSACNVHNEVSIAKEVVKKV--LETGSDDAGTYVLMSNIY 546

Query: 460 AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHI 501
           A  G  +E       MR   K +   +  GC    +G+  H+
Sbjct: 547 AANGKREEAA----EMRMKMKEKGLKKQPGCSWVKVGKQNHL 584



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 24/177 (13%)

Query: 38  ITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHG 97
           + TGFI+N  +  K    F   P                    +K+   W  +I  Y   
Sbjct: 270 MITGFIRNREMN-KACGLFDRMP--------------------EKNVISWTTMITGYVEN 308

Query: 98  LDPKEALVMFCLMLDNG-VSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFL 156
            + +EAL +F  ML +G V  +  +   +L ACS L  + EG QIH L+ K     +  +
Sbjct: 309 KENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIV 368

Query: 157 QNCLISLYVRCGYLEFARQLFDKMGI--RDSVSYNSMIDGYVKSGNIESARELFDSM 211
            + L+++Y + G L  AR++FD   +  RD +S+NSMI  Y   G+ + A E+++ M
Sbjct: 369 TSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQM 425



 Score = 45.8 bits (107), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 6/141 (4%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           QIH  +  +   KN  +T+ L+  +S S        AR +F   +    ++D   WN++I
Sbjct: 352 QIHQLISKSVHQKNEIVTSALLNMYSKSGELIA---ARKMF--DNGLVCQRDLISWNSMI 406

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ-IHGLLRKVAF 150
             Y+H    KEA+ M+  M  +G      +   +L ACS  GL+E+G++    L+R  + 
Sbjct: 407 AVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDESL 466

Query: 151 GSDLFLQNCLISLYVRCGYLE 171
                   CL+ L  R G L+
Sbjct: 467 PLREEHYTCLVDLCGRAGRLK 487


>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
          Length = 768

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 172/497 (34%), Positives = 278/497 (55%), Gaps = 11/497 (2%)

Query: 131 RLGLIEEGLQIHGLLRKVAFG----SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSV 186
           + G +E+  QIHG  + V  G        L   L++ Y + G    A+++F+ +   D V
Sbjct: 263 KCGSLEKLKQIHG--KAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNHIQNPDIV 320

Query: 187 SYNSMIDGYVKSGNIESARELFDSM---PIRERN--LISWNSVLNGYAQLKSGLQFAWQI 241
           S+  +I  Y+ +     A  +F  +    +R  +  ++   S       L +G      +
Sbjct: 321 SWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGMV 380

Query: 242 FEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIAR 301
           F      D I  N+++    + G ++ A ++F  M  +DV SW ++++G+ K   ++ AR
Sbjct: 381 FRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAAR 440

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
           R+FDEMP R+ V+  AM+ GYV+    +  LE+F  M+ E    P   ++V VLS  A +
Sbjct: 441 RIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADI 500

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
           G  D G ++H Y+ K    L+     AL+DMY+K G++  A+K+F+++    V  W  MI
Sbjct: 501 GAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMI 560

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
           +GLA+HG G  A +   +M +    P+++T   +L+AC+HAGLV EG   F+ M + H +
Sbjct: 561 SGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGI 620

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
           +P++QHYGCMVD+LGRAG +  A+ LIE MP++P+ VIWR+LLSAC  + NL + E   K
Sbjct: 621 KPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNLALAEMAGK 680

Query: 542 HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
            +I ++  +   Y+LL N++     W DA + R  M++R +KK PGCSW+E+ GVVHEF 
Sbjct: 681 MIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGCSWVEVNGVVHEFL 740

Query: 602 VRDKSRLQVRDIYYMLD 618
             D       D+Y +L+
Sbjct: 741 AEDAVHCIRADVYTVLE 757



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 130/456 (28%), Positives = 229/456 (50%), Gaps = 38/456 (8%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFI--KNTHLTTKLVASFSS--SPCTPLTEFA 68
           +TQ+   LL+KC +L  + QIH + +T G +  K  HL  KL+ +++   SP      F 
Sbjct: 253 NTQTFYFLLQKCGSLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFN 312

Query: 69  RYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA 128
                      +  D   W  +I  Y H   P +A  +F  +  +G+  D F     + A
Sbjct: 313 HI---------QNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSA 363

Query: 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY 188
           C     +  G  +HG++ +   GSD  + N LI +Y R G +E A  +F  M I+D  S+
Sbjct: 364 CGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSW 423

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER 248
            S+++G++K  +IE+AR +FD MP+  RN +SW +++ GY Q +  +    ++F++M   
Sbjct: 424 TSLLNGFIKCNDIEAARRIFDEMPM--RNSVSWTAMITGYVQGEVPIP-GLELFQEMRAE 480

Query: 249 -----DLISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDI 299
                 +I+  ++L GC   G  D   ++   + K     DV     ++D YAK G + +
Sbjct: 481 GKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVL 540

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           A ++F EMPKRDV +   M+ G   +G    ALE F +M  +    P++ +L+ VLSA +
Sbjct: 541 ALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMS-KSGXXPNEVTLLSVLSACS 599

Query: 360 QLGHIDKGVAI-HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ--IEDGSVDH 416
             G + +G ++  + ++        +H   ++D+  + G +  A ++ E   I+  SV  
Sbjct: 600 HAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVI- 658

Query: 417 WNAMINGLAIHG---LGELAFDLLMEMERLSIEPDD 449
           W ++++   +HG   L E+A  +++E+     EPDD
Sbjct: 659 WRSLLSACLVHGNLALAEMAGKMIIEL-----EPDD 689


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 182/560 (32%), Positives = 303/560 (54%), Gaps = 29/560 (5%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           K +   W A+I          EAL +F  M+  GV  +  + +  + AC+ L L+  G +
Sbjct: 324 KPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGRE 383

Query: 141 IHGLLRKVA-FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           IHG   KV    SDL + N L+  Y +C  +E AR+ F  +   D VS+N+M+ GY   G
Sbjct: 384 IHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRG 443

Query: 200 NIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKM------PERDLI 251
           + E A EL   M  +  E ++I+WN ++ G+ Q   G + A + F++M      P    I
Sbjct: 444 SHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDG-KAALEFFQRMHSMGMDPNTTTI 502

Query: 252 SWNSMLHGC-----VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
           S    L  C     +K GK      L + +     V  A +I  Y+    +++A  +F E
Sbjct: 503 S--GALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSA-LISMYSGCDSLEVACSVFSE 559

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           +  RDVV  N+++    ++G S+ AL++   M     +  +  ++V  L A ++L  + +
Sbjct: 560 LSTRDVVVWNSIISACAQSGRSVNALDLLREMNLS-NVEVNTVTMVSALPACSKLAALRQ 618

Query: 367 GVAIHRY-----LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
           G  IH++     L+   F LN     +LIDMY +CGSI+ + ++F+ +    +  WN MI
Sbjct: 619 GKEIHQFIIRCGLDTCNFILN-----SLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMI 673

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
           +   +HG G  A +L  +   + ++P+ ITFT LL+AC+H+GL++EG   F++M+  + +
Sbjct: 674 SVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAM 733

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
           +P ++ Y CMVD+L RAG        IE MP EPN  +W +LL ACR + N ++ E  A+
Sbjct: 734 DPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAAR 793

Query: 542 HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
           +L  ++  +S +YVL++N+++  G W DA ++R +MKER + K PGCSWIE++  +H F 
Sbjct: 794 YLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFV 853

Query: 602 VRDKSRLQVRDIYYMLDNMW 621
           V D S   +  I   +++++
Sbjct: 854 VGDTSHPLMEQISAKMESLY 873



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 149/621 (23%), Positives = 279/621 (44%), Gaps = 118/621 (19%)

Query: 20  LLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+KC+ L ++    Q+HA+++  G      L ++L+  +  + C    E AR +F K  
Sbjct: 95  ILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCV---EDARRMFDKM- 150

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
               +++ F W AI++ Y    D +E + +F LM++ GV  D F    V KACS L    
Sbjct: 151 ---SERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYR 207

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G  ++  +  + F  +  ++  ++ ++++CG ++ AR+ F+++  +D   +N M+ GY 
Sbjct: 208 VGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYT 267

Query: 197 KSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP-----ERD 249
             G  + A +    M +   + + ++WN++++GYAQ     + A + F +M      + +
Sbjct: 268 SKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQ-SGQFEEASKYFLEMGGLKDFKPN 326

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKM------PKRDVVSWA------------------ 285
           ++SW +++ G  + G   +A ++F KM      P    ++ A                  
Sbjct: 327 VVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHG 386

Query: 286 ----------------NMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSM 329
                           +++D YAK   V++ARR F  + + D+V+ NAM+ GY   G   
Sbjct: 387 YCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHE 446

Query: 330 KALEIFDNMQCE----------------------------------LYLHPDDASLVIVL 355
           +A+E+   M+ +                                  + + P+  ++   L
Sbjct: 447 EAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGAL 506

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
           +A  Q+ ++  G  IH Y+ ++   L+   G ALI MYS C S+E A  VF ++    V 
Sbjct: 507 AACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVV 566

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            WN++I+  A  G    A DLL EM   ++E + +T    L AC+    +++G       
Sbjct: 567 VWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQG------- 619

Query: 476 RRIHKLEPELQHYGC------MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRN 529
           + IH+         C      ++D+ GR G I+ +R + + MP + + V W  ++S    
Sbjct: 620 KEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP-QRDLVSWNVMISV--- 675

Query: 530 YENLNVGEPVAKHLIGMDSSN 550
                       H  GMD+ N
Sbjct: 676 ---------YGMHGFGMDAVN 687



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 174/373 (46%), Gaps = 22/373 (5%)

Query: 222 NSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC-----VKCGKMDDAQALFDKM 276
           N VLN  A L S +          P+  +  + S+L  C     ++ G    AQ + + +
Sbjct: 67  NGVLNNAAMLLSSMDLT------NPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGV 120

Query: 277 PKRDVVSW--ANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEI 334
              DV  +  + +++ Y + G V+ ARR+FD+M +R+V +  A+M  Y   G   + +++
Sbjct: 121 ---DVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKL 177

Query: 335 FDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYS 394
           F  M  E  + PD      V  A ++L +   G  ++ Y+    F  N     +++DM+ 
Sbjct: 178 FYLMVNE-GVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFI 236

Query: 395 KCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTG 454
           KCG ++ A + FE+IE   V  WN M++G    G  + A   + +M+   ++PD +T+  
Sbjct: 237 KCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNA 296

Query: 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPME 514
           +++  A +G  +E    F  M  +   +P +  +  ++    + G+   A ++   M +E
Sbjct: 297 IISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLE 356

Query: 515 ---PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV--LLSNMFAGLGMWND 569
              PN +   + +SAC N   L  G  +  + I ++  +S   V   L + +A       
Sbjct: 357 GVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEV 416

Query: 570 ARRVRSMMKERNL 582
           ARR   M+K+ +L
Sbjct: 417 ARRKFGMIKQTDL 429



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 136/292 (46%), Gaps = 24/292 (8%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           +IH  ++      +T + + L++ +S   C  L E A  +F +       +D  +WN+II
Sbjct: 520 EIHGYVLRNHIELSTGVGSALISMYSG--CDSL-EVACSVFSELST----RDVVVWNSII 572

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
              +       AL +   M  + V V+  +    L ACS+L  + +G +IH  + +    
Sbjct: 573 SACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLD 632

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD-- 209
           +  F+ N LI +Y RCG ++ +R++FD M  RD VS+N MI  Y   G    A  LF   
Sbjct: 633 TCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQF 692

Query: 210 -SMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLISWNSMLHGCV-----K 262
            +M ++  N I++ ++L+  +   SGL +  W+ F+ M     +      + C+     +
Sbjct: 693 RTMGLKP-NHITFTNLLSACSH--SGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSR 749

Query: 263 CGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDI----ARRLFDEMPK 309
            G+ ++     +KMP + +   W +++         D+    AR LF+  P+
Sbjct: 750 AGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQ 801


>gi|297744558|emb|CBI37820.3| unnamed protein product [Vitis vinifera]
          Length = 504

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 162/422 (38%), Positives = 254/422 (60%), Gaps = 24/422 (5%)

Query: 187 SYNSMIDGYVKSGNIESARELFDSMPIR----------ERNLISWNSVLNGYAQLKSGLQ 236
           +YN ++ GY ++G ++ AR+LFD +P            ERN++SWNS++  Y + +    
Sbjct: 86  AYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFS 145

Query: 237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR 296
            A  +F++M ERD ISWN+M+ G V+   M++A  LF +MP  D ++W +MI G+A+ G 
Sbjct: 146 -ARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGN 204

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM--QCELYLHPDDASLVIV 354
           +++AR LF  +P++++V+ N+M+ GY  NG    A E++  M  Q E    PD  +L  V
Sbjct: 205 LELARALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGE---KPDRHTLSSV 261

Query: 355 LSAIAQLGHIDKGVAIHRYLEKD---QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE- 410
           LS  +    +  G+ IH+ + K       +N     +LI MYS+CG+I  A  +F++++ 
Sbjct: 262 LSVCSGFAALHLGMQIHQQITKTVIPDIPINN----SLITMYSRCGAIVEARTIFDEVKL 317

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470
              V  WNAMI G A HG    A +L   M+RL + P  ITF  +LNACAHAG VKEG +
Sbjct: 318 QKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGFVKEGRM 377

Query: 471 CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNY 530
            F+ M     +EP ++H+  +VDI+GR G +E A +LI  MP EP+  +W  LL ACR +
Sbjct: 378 HFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSMPFEPDKAVWGALLGACRVH 437

Query: 531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSW 590
            N+ +    A+ L+ ++  +S+ YVLL NM+A +G W++A  +R MM+  N++K PG SW
Sbjct: 438 NNVELARVAAEALMKLEPESSAPYVLLHNMYADVGQWDNATEMRMMMERNNIRKQPGYSW 497

Query: 591 IE 592
           ++
Sbjct: 498 VD 499



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 176/345 (51%), Gaps = 54/345 (15%)

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD 209
           F  ++   N +I  YV+   +  AR LFD+M  RD++S+N+MI GYV+  ++E A  LF 
Sbjct: 123 FERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQ 182

Query: 210 SMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDA 269
            MP    + ++WNS+++G+AQ K  L+ A  +F  +P+++L+SWNSM+ G    G    A
Sbjct: 183 EMP--NPDTLTWNSMISGFAQ-KGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGA 239

Query: 270 QALFDKM------PKRDVVSWA--------------------------------NMIDGY 291
             L+ +M      P R  +S                                  ++I  Y
Sbjct: 240 TELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVIPDIPINNSLITMY 299

Query: 292 AKLGRVDIARRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
           ++ G +  AR +FDE+  +++V++ NAM+GGY  +G++  ALE+F+ M+  L + P   +
Sbjct: 300 SRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMK-RLKVRPTYIT 358

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK--HGVALIDMYSKCGSIENAIKVFEQ 408
            + VL+A A  G + +G  +H      +F +  +  H  +L+D+  + G +E A+ +   
Sbjct: 359 FISVLNACAHAGFVKEG-RMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINS 417

Query: 409 I---EDGSVDHWNAMINGLAIHG---LGELAFDLLMEMERLSIEP 447
           +    D +V  W A++    +H    L  +A + LM++E  S  P
Sbjct: 418 MPFEPDKAV--WGALLGACRVHNNVELARVAAEALMKLEPESSAP 460



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 154/344 (44%), Gaps = 72/344 (20%)

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMI--------- 288
           A Q+F+ M ER+++SWN+M+ G ++ G ++ A   F +MP+RD  S + ++         
Sbjct: 4   ALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQNGEL 63

Query: 289 ----------------------------DGYAKLGRVDIARRLFDEMP------------ 308
                                        GY + GRVD AR+LFD++P            
Sbjct: 64  DEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRF 123

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
           +R+VV+ N+M+  YV+      A  +FD M+       D  S   ++S   ++  +++  
Sbjct: 124 ERNVVSWNSMIMCYVKARDIFSARVLFDQMK-----ERDTISWNTMISGYVRMSDMEEAW 178

Query: 369 AIHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
            + + +   D  + N     ++I  +++ G++E A  +F  I   ++  WN+MI G   +
Sbjct: 179 MLFQEMPNPDTLTWN-----SMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENN 233

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK-----LE 482
           G  + A +L  +M     +PD  T + +L+ C+       G     L  +IH+     + 
Sbjct: 234 GDYKGATELYRQMLLQGEKPDRHTLSSVLSVCS-------GFAALHLGMQIHQQITKTVI 286

Query: 483 PELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           P++     ++ +  R G I  AR + +++ ++   + W  ++  
Sbjct: 287 PDIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGG 330



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 123/244 (50%), Gaps = 13/244 (5%)

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
           E AR +F    A   +K+   WN++I  Y +  D K A  ++  ML  G   D+ + S V
Sbjct: 206 ELARALF----ATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSV 261

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI-RD 184
           L  CS    +  G+QIH  + K     D+ + N LI++Y RCG +  AR +FD++ + ++
Sbjct: 262 LSVCSGFAALHLGMQIHQQITKTVI-PDIPINNSLITMYSRCGAIVEARTIFDEVKLQKE 320

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMP-IRER-NLISWNSVLNGYAQ---LKSG-LQFA 238
            +S+N+MI GY   G    A ELF+ M  ++ R   I++ SVLN  A    +K G + F 
Sbjct: 321 VISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFK 380

Query: 239 WQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRV 297
               E   E  +  + S++    + G++++A  L + MP + D   W  ++        V
Sbjct: 381 SMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSMPFEPDKAVWGALLGACRVHNNV 440

Query: 298 DIAR 301
           ++AR
Sbjct: 441 ELAR 444


>gi|326504712|dbj|BAK06647.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 658

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 191/647 (29%), Positives = 329/647 (50%), Gaps = 82/647 (12%)

Query: 21  LRKCKTLNDVNQIHARMITTGFI-KNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH-AF 78
           L+    L    Q+HA    +G +  NT +   L+A ++  P       AR++F +   A 
Sbjct: 16  LKSGARLRHGEQLHALAAKSGLLASNTFVRNSLLAFYARLPSPQAPALARHLFDEIPLAL 75

Query: 79  RE----------------------------KKDPFLWNAIIKTYSHGLDPKEALVMFCLM 110
           R+                            ++D   +  ++   +     ++A+ +F  M
Sbjct: 76  RDPAAHNTLLASLARAGRLDLAQGMLAEMPQRDTVSYTTVLTALARAGHAEDAVAVFRGM 135

Query: 111 LDNGVSVDKFSASLVLKACSRLGLIEEGLQI---HGLLRKVAFGSDLFLQNCLISLYVRC 167
           L   V  ++ + + VL A   L L    + +   HG+  +      L +   L+  Y   
Sbjct: 136 LAQDVPPNEVTLAGVLTA---LALERPPVPVGVAHGVTVRRGLNGFLIVATNLVHAYAAA 192

Query: 168 GYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNG 227
             + FAR++F++M  +++V++N+M++GY+K+G +  A E+F  +P  ER+ +SW ++++G
Sbjct: 193 SQVCFAREIFEQMPDKNTVTWNAMLNGYLKAGMLPMAAEVFGRIP--ERDAVSWLTIIDG 250

Query: 228 Y---------------------------------------AQLKSGLQFAWQIFEKMPER 248
           Y                                       A +  G Q    I +   + 
Sbjct: 251 YIRADCTSEALRAYVAMMAEVDTRGNAALLVDLIKVCARHAAVLEGQQLHTVILKDGFDA 310

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
                 +++H    C  +D A+  F    K  + SW  ++ G      +  AR+LFD+MP
Sbjct: 311 HPFVQATLIHFYGSCDLLDIARMQFKLSDKSHIASWNALMSGLLHRNLMHEARQLFDDMP 370

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
           +RD ++ + ++ GYV++G+S KAL++F  +     + P+D +L   LSA+A  G +++G 
Sbjct: 371 ERDTISWSTLLSGYVQSGHSNKALQLF-YLMLGAGVEPNDVTLASTLSAVADSGMLEQGR 429

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED--GSVDHWNAMINGLAI 426
            IH Y+  +   L       LIDMY+KCGS+ +AI++F  ++    SV  WNA+I  LAI
Sbjct: 430 FIHDYIISNSIQLTDNLSAGLIDMYAKCGSVADAIQLFSHVKHKLSSVSPWNAIICSLAI 489

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           HG    + +L +E++R +I+P+ +T+ G+LNAC HAGLV EG   FE M R + ++P ++
Sbjct: 490 HGHAHTSLELFLELQRTNIKPNSVTYIGVLNACCHAGLVTEGRHHFESMSREYGIQPTIK 549

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HYGCMVD+LGRAGH+E A NLI+ MPM  + VIW ++L+A R + N+ +GE  A+ L  +
Sbjct: 550 HYGCMVDLLGRAGHLEEAENLIQMMPMRSDVVIWGSILAAARTHGNVALGEKAAEELAKI 609

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK--ERNLKKLPGCSWI 591
           D ++ +S V LSN+FA    WN+   VR  ++  + N+ +  G S +
Sbjct: 610 DPNHGASKVALSNIFAEAARWNNVSLVRKELQDEDENMGRFSGSSGV 656


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 203/688 (29%), Positives = 324/688 (47%), Gaps = 134/688 (19%)

Query: 27  LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFL 86
           L   +Q+HA  I T F  N H        FS S  TP   +                   
Sbjct: 22  LQQTHQLHAHFIKTQF-HNPH------PFFSQSHFTPEANY------------------- 55

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDN-GVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
            N +I +Y++   P+ +   +  M  N   ++D F    +LKAC++    + G ++HG  
Sbjct: 56  -NLLISSYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASSGDLGRELHGFA 114

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESA- 204
           +K  F SD+F+ N L+++Y +CG L  AR +FD+M  RD VS+ +M+  YV+S     A 
Sbjct: 115 QKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEAL 174

Query: 205 ---REL-FDSMPIRERNLISWNSVLNGYAQLKSG-------------------------- 234
              RE+ F  + +    LIS  +V      +KSG                          
Sbjct: 175 RLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALID 234

Query: 235 -------LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR-------- 279
                  L  A ++F+++ +R ++SW  M+ GC++  ++D+    F++M +         
Sbjct: 235 MYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEIT 294

Query: 280 --------------DVVSW-----------------ANMIDGYAKLGRVDIARRLFDEMP 308
                         D+  W                   +ID Y K G+V  AR LF+ + 
Sbjct: 295 LLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVK 354

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
           K+DV   + ++  Y       +   +F  M     + P++ ++V +LS  A+ G +D G 
Sbjct: 355 KKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNN-DVKPNNVTMVSLLSLCAEAGALDLGK 413

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
             H Y+ +    ++     ALI+MY+KCG +  A  +F +     +  WN M+ G ++HG
Sbjct: 414 WTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMHG 473

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
            G+ A +L  EME   +EP+DITF  + +AC+H+GL                    ++HY
Sbjct: 474 CGKEALELFSEMESHGVEPNDITFVSIFHACSHSGL--------------------MEHY 513

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
           GC+VD+LGRAGH++ A N+IE+MPM PN +IW  LL+AC+ ++NL +GE  A+ ++ +D 
Sbjct: 514 GCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGEVAARKILELDP 573

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
            N    VL SN++A    WND   VR  M    +KK PG SWIE+ G VH F   DK+  
Sbjct: 574 QNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGSVHHFKSGDKACT 633

Query: 609 QVRDIYYMLDNM--------WTPDSVAT 628
           Q   +Y M+  M        +TP++ A 
Sbjct: 634 QTTKVYEMVTEMCIKLRESGYTPNTAAV 661


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 182/549 (33%), Positives = 310/549 (56%), Gaps = 15/549 (2%)

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG-VSVDKFSASLVLKACSRLGLIEEGLQI 141
           D   WN+++  Y+      E++ ++ +ML +G V++++ + S +L   S  G ++ G QI
Sbjct: 101 DVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQI 160

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           HG + K  + S LF+ + L+ +Y + G++  A ++F+++  ++ V YN+MI G ++   I
Sbjct: 161 HGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFI 220

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPER----DLISWNSM 256
             A +LFD+MP  E++ ISW +++ G  Q  +GL + A   F++M       D  ++ S+
Sbjct: 221 VEAEQLFDNMP--EKDSISWTTIITGLTQ--NGLFKEAVDKFKEMGIEGFCMDQFTFGSV 276

Query: 257 LHGCVKCGKMDDAQALFDKMPKRD----VVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
           L  C     +D+ + +   + + D    +   + ++D Y K   V  A  +F +M  ++V
Sbjct: 277 LTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNV 336

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           ++  AM+ GY +NGYS +A+ IF +MQ    +HPDD +L  V+S+ A L  +++G   H 
Sbjct: 337 ISWTAMLVGYGQNGYSEEAVRIFCDMQ-RNEIHPDDFTLGSVISSCANLASLEEGAQFHG 395

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
                          ALI +Y KCGS+E+A ++F +++      W A+++G A  G    
Sbjct: 396 QALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANE 455

Query: 433 AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV 492
              L   M    I PD +TF G+L+AC+ AGLV++G   FE M + H++ P   HY CM+
Sbjct: 456 TISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMI 515

Query: 493 DILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552
           D+L RAG +E A+N I  MP  P+ + W TLLS+CR   NL +G+  A+ L  ++  N +
Sbjct: 516 DLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPA 575

Query: 553 SYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRD 612
           SY+LLS+++A  G W+D  ++R  M+E  +KK PG SWI+ +  VH F   D+S      
Sbjct: 576 SYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQ 635

Query: 613 IYYMLDNMW 621
           IY  L++++
Sbjct: 636 IYAKLESLY 644



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 133/518 (25%), Positives = 235/518 (45%), Gaps = 72/518 (13%)

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI 182
           +  LK C       +  ++H  + +     + FL N LI+ Y + G L+ AR +FD +  
Sbjct: 9   TAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQ 68

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA------------- 229
            +  S+N+++  Y K G ++  + +FDSMP    +++SWNS+L+GYA             
Sbjct: 69  PNLFSWNTLLSAYSKLGYLQDMQRVFDSMP--NHDVVSWNSLLSGYAGNGLISESVRVYN 126

Query: 230 -QLKS-------------------------GLQFAWQIFEKMPERDLISWNSMLHGCVKC 263
             LK                          G Q   QIF+   +  L   + ++    K 
Sbjct: 127 MMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKT 186

Query: 264 GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV 323
           G ++DA  +F+++P++++V +  MI G  +   +  A +LFD MP++D ++   ++ G  
Sbjct: 187 GFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLT 246

Query: 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG 383
           +NG   +A++ F  M  E +   D  +   VL+A      +D+G  IH Y+ +  +  N 
Sbjct: 247 QNGLFKEAVDKFKEMGIEGFCM-DQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNI 305

Query: 384 KHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
             G AL+DMY KC +++ A  VF ++   +V  W AM+ G   +G  E A  +  +M+R 
Sbjct: 306 FVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRN 365

Query: 444 SIEPDDITFTGLLNACA-----------HAGLVKEGLLCFELMRRIHKLEPELQHYGCMV 492
            I PDD T   ++++CA           H   +  GL+CF  +               ++
Sbjct: 366 EIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSN------------ALI 413

Query: 493 DILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNY----ENLNVGEPVAKHLIGMDS 548
            + G+ G +E A  L  +M +  ++V W  L+S    +    E +++ E +  H I  D 
Sbjct: 414 TLYGKCGSLEHAHQLFHEMKIR-DEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDG 472

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLP 586
                 VL +   AGL +         M+KE  +  +P
Sbjct: 473 VTFVG-VLSACSRAGL-VEKGYHYFECMVKEHRITPIP 508



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 141/285 (49%), Gaps = 18/285 (6%)

Query: 26  TLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPF 85
            L++  QIHA +I T +  N  + + L+  +    C  + ++A  +F K       K+  
Sbjct: 285 ALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCK--CRNV-KYAEAVFRKM----RHKNVI 337

Query: 86  LWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
            W A++  Y      +EA+ +FC M  N +  D F+   V+ +C+ L  +EEG Q HG  
Sbjct: 338 SWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQA 397

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
                   + + N LI+LY +CG LE A QLF +M IRD VS+ +++ GY + G      
Sbjct: 398 LASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETI 457

Query: 206 ELFDSMPIRE--RNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLIS-----WNSML 257
            LF++M       + +++  VL+  A  ++GL +  +  FE M +   I+     +  M+
Sbjct: 458 SLFETMLAHGIVPDGVTFVGVLS--ACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMI 515

Query: 258 HGCVKCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIAR 301
               + G++++A+   ++MP   D + WA ++      G ++I +
Sbjct: 516 DLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGK 560


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 185/541 (34%), Positives = 279/541 (51%), Gaps = 29/541 (5%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D  LWN ++          EA+++F  M+  G+  D  + + VL   + L  +  G+ 
Sbjct: 169 ERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMG 228

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           I  L  KV F S  ++   L  LY +CG +E AR LF ++G  D VSYN+MI GY  +  
Sbjct: 229 IQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNE 288

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
            ES+  LF  + +    + S + V         GL   +  F  +           +HG 
Sbjct: 289 TESSVRLFKELLVSGEKVNSSSIV---------GLIPVFFPFGHL------HLTRCIHGF 333

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
             C K               V         Y++L  ++ AR LFDE  ++ + + NAM+ 
Sbjct: 334 --CTKSGVVSNSSVSTALTTV---------YSRLNEIESARLLFDESSEKSLASWNAMIS 382

Query: 321 GYVRNGYSMKALEIFDNMQ-CELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF 379
           GY +NG + KA+ +F  MQ CE+   P+  ++  +LSA AQLG +  G  +H  + ++ F
Sbjct: 383 GYAQNGLTEKAISLFQEMQKCEV--RPNPVTVTSILSACAQLGALSLGKWVHDLINRESF 440

Query: 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLME 439
             N     ALIDMY+KCGSI  A ++F  + + +   WNAMI+G  +HG G  A +L  E
Sbjct: 441 ESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNE 500

Query: 440 MERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG 499
           M    + P  +TF  +L AC+HAGLV+EG   F  M   H  EP  +HY CMVD+LGRAG
Sbjct: 501 MLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAG 560

Query: 500 HIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559
           +++ A + I  MP+EP   +W  LL AC  +++ N+    +  L  +D  N   YVLLSN
Sbjct: 561 NLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSN 620

Query: 560 MFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDN 619
           +++    + +A  VR ++K R L K PGC+ IE+   +H F   D+S  Q   IY ML+ 
Sbjct: 621 IYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEK 680

Query: 620 M 620
           +
Sbjct: 681 L 681



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 155/584 (26%), Positives = 259/584 (44%), Gaps = 66/584 (11%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           L L+ +  TL+ +NQ HA++I  G   +    TKL    S        + A  +F    +
Sbjct: 14  LTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSH---LKAIDQASLLF----S 66

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFC-LMLDNGVSVDKFSASLVLKACSRLGLIE 136
                D FL+N +I+ +S    P  A+ ++  L     +  D F+ + V+   S LGL  
Sbjct: 67  TIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGL 126

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
                  +     FGSDLF+ + +++ Y +   +  AR++FD M  RD+V +N+M+ G V
Sbjct: 127 LLHAHSIV---AGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLV 183

Query: 197 KSGNIESARELFDSMPIRERNLISWNS-----VLNGYAQLKS-----GLQFAWQIFEKMP 246
           K+   + A  +F  M    +  I ++S     VL G A+L+      G+Q          
Sbjct: 184 KNSCFDEAILIFGDMV---KGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHS 240

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
              +I+  + L+   KCG+++ A+ LF ++ + D+VS+  MI GY      + + RLF E
Sbjct: 241 HAYVITGLACLYS--KCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKE 298

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           +          ++ G   N                       +S+V ++      GH+  
Sbjct: 299 L----------LVSGEKVN----------------------SSSIVGLIPVFFPFGHLHL 326

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
              IH +  K     N     AL  +YS+   IE+A  +F++  + S+  WNAMI+G A 
Sbjct: 327 TRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQ 386

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           +GL E A  L  EM++  + P+ +T T +L+ACA  G +  G    +L+ R    E  + 
Sbjct: 387 NGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINR-ESFESNIF 445

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA----CRNYENLNVGEPVAKH 542
               ++D+  + G I  A+ L   MP E N V W  ++S        +E LN+   +   
Sbjct: 446 VSTALIDMYAKCGSITEAQRLFSMMP-EKNAVTWNAMISGYGLHGYGHEALNLFNEMLHS 504

Query: 543 LIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLP 586
            +        S VL +   AGL    D    RSM+ +   + LP
Sbjct: 505 RVSPTGVTFLS-VLYACSHAGLVREGD-EIFRSMVHDHGFEPLP 546


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 215/694 (30%), Positives = 341/694 (49%), Gaps = 96/694 (13%)

Query: 20  LLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           ++R C  L  V    Q+H  ++ +GF ++ ++ T L+  +S +      E AR +F +  
Sbjct: 135 VIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNI---EEARLVFDQL- 190

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
               +K    W  II  Y+       +L +F  M +  V  D++  S VL ACS L  +E
Sbjct: 191 ---SEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLE 247

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G QIH  + +     D+ + N LI  Y +C  ++  R+LFD+M +++ +S+ +MI GY+
Sbjct: 248 GGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYM 307

Query: 197 KSGNIESARELFDSM-------------------PIRER--------------NLISWNS 223
           ++     A +LF  M                     RE               NL S   
Sbjct: 308 QNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEF 367

Query: 224 VLNGYAQL--KSGLQF-AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR- 279
           V NG   +  KS L   A ++F+ M E+++IS+N+M+ G     K+ +A  LF +M  R 
Sbjct: 368 VKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRL 427

Query: 280 --------------------------------------DVVSWANMIDGYAKLGRVDIAR 301
                                                 D+ + + +ID Y+K   V  AR
Sbjct: 428 FPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDAR 487

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
            +F+EM ++D+V  NAM  GY ++  + +AL+++  +Q      P++ +   +++A + L
Sbjct: 488 HVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQ-KPNEFTFAALITAASNL 546

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
             +  G   H  L K           AL+DMY+KCGSIE A K+F       V  WN+MI
Sbjct: 547 ASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMI 606

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
           +  A HG  E A  +  EM +  I+P+ +TF  +L+AC+HAG V++GL  F  M     +
Sbjct: 607 STHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGF-GI 665

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
           +P  +HY C+V +LGR+G +  A+  IE MP+EP  ++WR+LLSACR   N+ +G+  A+
Sbjct: 666 KPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAE 725

Query: 542 HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
             I  D  +S SY+LLSN+FA  GMW D ++VR  M    + K PG SWIE+   V+ F 
Sbjct: 726 MAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFI 785

Query: 602 VRDKSRLQVRDIYYMLDNM--------WTPDSVA 627
            RD +  +  DI  +LD +        + PD+ A
Sbjct: 786 ARDTTHREA-DIGSVLDILIQHIKGAGYVPDATA 818



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 138/511 (27%), Positives = 243/511 (47%), Gaps = 73/511 (14%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           IH ++I +G   +T L   L+   S S      + AR +F K       K+   W++++ 
Sbjct: 49  IHGQIIVSGLQSDTFLANILINVCSKSD---RVDNARVVFDKM----PHKNLITWSSMVS 101

Query: 93  TYSHGLDPKEALVMFC-LMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
            YS     +EAL++F  L   +G   ++F  + V++AC++LG++E+G Q+HG + +  F 
Sbjct: 102 MYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFD 161

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
            D+++   LI  Y + G +E AR +FD++  + +V++ ++I GY K G    + ELF  M
Sbjct: 162 QDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQM 221

Query: 212 PIRERNLIS----WNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCG 264
             RE N++      +SVL+  +    L+ G Q    +  +  E D+   N ++    KC 
Sbjct: 222 --RETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCN 279

Query: 265 KMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVR 324
           ++   + LFD+M  ++++SW  MI G                               Y++
Sbjct: 280 RVKAGRKLFDQMVVKNIISWTTMISG-------------------------------YMQ 308

Query: 325 NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY-----LEKDQF 379
           N +  +A+++F  M   L   PD  +   VL++      +++G  +H Y     LE D+F
Sbjct: 309 NSFDWEAMKLFGEMN-RLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEF 367

Query: 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLME 439
             NG     LIDMY+K   + +A KVF+ + + +V  +NAMI G +       A +L  E
Sbjct: 368 VKNG-----LIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHE 422

Query: 440 MERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL------EPELQHYGCMVD 493
           M      P  +TF  LL   A        L   EL ++IH L        +L     ++D
Sbjct: 423 MRVRLFPPSLLTFVSLLGVSA-------SLFALELSKQIHGLIIKFGVSLDLFAGSALID 475

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
           +  +  +++ AR++ E+M  E + V+W  + 
Sbjct: 476 VYSKCSYVKDARHVFEEMN-EKDIVVWNAMF 505



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 130/240 (54%), Gaps = 2/240 (0%)

Query: 287 MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP 346
           +I+  +K  RVD AR +FD+MP ++++  ++M+  Y + GYS +AL +F ++Q +   HP
Sbjct: 68  LINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHP 127

Query: 347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVF 406
           ++  L  V+ A  QLG ++KG  +H ++ +  F  +   G +LID YSK G+IE A  VF
Sbjct: 128 NEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVF 187

Query: 407 EQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVK 466
           +Q+ + +   W  +I G    G   ++ +L  +M   ++ PD    + +L+AC+    ++
Sbjct: 188 DQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLE 247

Query: 467 EGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
            G      + R    E ++     ++D   +   ++A R L + M ++ N + W T++S 
Sbjct: 248 GGKQIHAYVLR-RGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVK-NIISWTTMISG 305


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 191/636 (30%), Positives = 323/636 (50%), Gaps = 59/636 (9%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           IH +MI+ G+  + +L TK++  ++ S C     +AR +F +      +++   WN +I 
Sbjct: 93  IHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEM----PERNLTAWNTMIL 148

Query: 93  TYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGS 152
            Y+   D  EA  +F  ML  GV  D F+ +  L+ C  L   + G Q+H  L    F  
Sbjct: 149 AYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKG 208

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           D F+ N LI +Y +C   E   ++FD+MG R+ V++NS+I    + G+   A  LF  M 
Sbjct: 209 DTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQ 268

Query: 213 IRERNL----ISWNSVLNGYAQLKS---GLQFAWQIFEKMPERDLISWNSMLHGCVKCGK 265
             E  +     ++ ++L   A  ++   G Q    +      +++I    ++H   +CG+
Sbjct: 269 ESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGR 328

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP----KRDVVACNAMMGG 321
           ++ A+ +F++M +R+  SW +MI+GY + G    A RLF +M     K D  + ++M+  
Sbjct: 329 LNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSS 388

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH---------- 371
            V    S K  E+  N      +  +    V+++   A+ G +D    ++          
Sbjct: 389 CVSLSDSQKGRELH-NFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNT 447

Query: 372 ------------RYLEKDQFS-------LNGKHGV--------------ALIDMYSKCGS 398
                       + L+K+ F+        + ++ V              AL+DMYSKCG+
Sbjct: 448 ALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKCGA 507

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
           I  A  VF+ +   ++  WNAMI+G + HG  + A  L  EM +  + P+++TF  +L+A
Sbjct: 508 ITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSA 567

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
           C+H GLV+EGL  F  M+  + +E + +HY CMVD+LGRAG +E A+  +E MP+EP   
Sbjct: 568 CSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVS 627

Query: 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578
            W  LL ACR ++++++G   A+ L  +D  N   YV++SN++A  G W +   +R MMK
Sbjct: 628 TWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMK 687

Query: 579 ERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
            + +KK PG SWIE+   +  F    K+  +  +IY
Sbjct: 688 MKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIY 723



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 123/507 (24%), Positives = 228/507 (44%), Gaps = 103/507 (20%)

Query: 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLE---FA 173
           V+    S +++ C      + G  IH  +    +  D +L   ++ LY R G L+   +A
Sbjct: 69  VNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYA 128

Query: 174 RQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM--------------------PI 213
           R+LF++M  R+  ++N+MI  Y +  +   A  +FD M                     +
Sbjct: 129 RKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGAL 188

Query: 214 RERN--------LIS---------WNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
           R R+        LI+          N++++ YA+     +   ++F++M ER+ ++WNS+
Sbjct: 189 RSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDE-ESCLKVFDEMGERNQVTWNSI 247

Query: 257 LHGCVKCGKMDDAQALFDKMPK-------------------------------------- 278
           +    + G  +DA  LF +M +                                      
Sbjct: 248 ISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRA 307

Query: 279 ---RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
              ++++    ++  Y++ GR++ A+ +F+ M +R+  + N+M+ GY +NG + +AL +F
Sbjct: 308 NITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLF 367

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
             MQ    + PD  SL  +LS+   L    KG  +H ++ ++     G   V L+DMY+K
Sbjct: 368 KQMQLN-GIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAK 426

Query: 396 CGSIENAIKVFEQI--EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITF- 452
           CGS++ A KV++Q   +D +   WN+++ G A  GL + +F+  +EM    IE D +T  
Sbjct: 427 CGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMV 486

Query: 453 ---------TGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503
                    T L++  +  G + +    F+ M         +  +  M+    + G  + 
Sbjct: 487 TIVNLLVLETALVDMYSKCGAITKARTVFDNMN-----GKNIVSWNAMISGYSKHGCSKE 541

Query: 504 ARNLIEDMP---MEPNDVIWRTLLSAC 527
           A  L E+MP   M PN+V +  +LSAC
Sbjct: 542 ALILYEEMPKKGMYPNEVTFLAILSAC 568


>gi|356528072|ref|XP_003532629.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  311 bits (798), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 193/558 (34%), Positives = 312/558 (55%), Gaps = 34/558 (6%)

Query: 52  LVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLML 111
           +V+ + S   +   E  R +F        ++D   WN +I  Y+      +AL +F  M 
Sbjct: 107 IVSGYFSCRGSRFVEEGRRLF----ELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMP 162

Query: 112 D-NGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYL 170
           + N VS +      +L      G ++  +     + +  + + L   + LIS  VR G L
Sbjct: 163 ERNAVSSNALITGFLLN-----GDVDSAVDFFRTMPE-HYSTSL---SALISGLVRNGEL 213

Query: 171 EFARQLFDKMGIRDSV---SYNSMIDGYVKSGNIESARELFDSMPIRE-----------R 216
           + A  +  + G  D     +YN++I GY + G++E AR LFD +P              R
Sbjct: 214 DMAAGILCECGNGDDDLVHAYNTLIAGYGQRGHVEEARRLFDGIPDDRGDGDEGQRRFRR 273

Query: 217 NLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK 275
           N++SWNS++  Y  +K+G +  A ++F++M E+D  SWN+M+ G V+   M++A  LF +
Sbjct: 274 NVVSWNSMMMCY--VKAGDIVSARELFDRMVEQDTCSWNTMISGYVQISNMEEASKLFRE 331

Query: 276 MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
           MP  DV+SW  ++ G+A+ G +++A+  F+ MP +++++ N+++ GY +N     A+++F
Sbjct: 332 MPIPDVLSWNLIVSGFAQKGDLNLAKDFFERMPLKNLISWNSIIAGYEKNEDYKGAIQLF 391

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
             MQ E    PD  +L  V+S    L ++  G  IH+ + K     +     +LI MYS+
Sbjct: 392 SRMQFEGE-RPDRHTLSSVMSVCTGLVNLYLGKQIHQLVTKIVIP-DSPINNSLITMYSR 449

Query: 396 CGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTG 454
           CG+I +A  VF +I+    V  WNAMI G A HGL   A +L   M+RL I P  ITF  
Sbjct: 450 CGAIVDACTVFNEIKLYKDVITWNAMIGGYASHGLAAEALELFKLMKRLKIHPTYITFIS 509

Query: 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPME 514
           ++NACAHAGLV+EG   F+ M   + +E  ++H+  +VDILGR G ++ A +LI  MP +
Sbjct: 510 VMNACAHAGLVEEGRRQFKSMINDYGIERRVEHFASLVDILGRQGQLQEAMDLINTMPFK 569

Query: 515 PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVR 574
           P+  +W  LLSACR + N+ +    A  LI ++  +S+ YVLL N++A LG W+DA  VR
Sbjct: 570 PDKAVWGALLSACRVHNNVELALVAADALIRLEPESSAPYVLLYNIYANLGQWDDAESVR 629

Query: 575 SMMKERNLKKLPGCSWIE 592
            +M+E+N+KK  G SW++
Sbjct: 630 VLMEEKNVKKQAGYSWVD 647



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 126/435 (28%), Positives = 207/435 (47%), Gaps = 31/435 (7%)

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
           S L   N  IS  +R G L  AR LFD M  RD+V++NSMI GYV    I  AR+LFD M
Sbjct: 37  SPLNRSNKKISNLIRSGRLSEARALFDSMKHRDTVTWNSMITGYVHRREIARARQLFDEM 96

Query: 212 PIRERNLISWNSVLNGYAQLKSG--LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDA 269
           P   R+++SWN +++GY   +    ++   ++FE MP+RD +SWN+++ G  K G+MD A
Sbjct: 97  P--RRDVVSWNLIVSGYFSCRGSRFVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMDQA 154

Query: 270 QALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSM 329
             LF+ MP+R+ VS   +I G+   G VD A   F  MP+    + +A++ G VRNG   
Sbjct: 155 LKLFNAMPERNAVSSNALITGFLLNGDVDSAVDFFRTMPEHYSTSLSALISGLVRNG--- 211

Query: 330 KALEIFDNMQCELYLHPDDA--SLVIVLSAIAQLGHIDKGVAIHRYLEKD---------Q 378
             L++   + CE     DD   +   +++   Q GH+++   +   +  D         +
Sbjct: 212 -ELDMAAGILCECGNGDDDLVHAYNTLIAGYGQRGHVEEARRLFDGIPDDRGDGDEGQRR 270

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
           F  N     +++  Y K G I +A ++F+++ +     WN MI+G       E A  L  
Sbjct: 271 FRRNVVSWNSMMMCYVKAGDIVSARELFDRMVEQDTCSWNTMISGYVQISNMEEASKLFR 330

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
           EM      PD +++  +++  A  G +      FE M         L  +  ++    + 
Sbjct: 331 EMP----IPDVLSWNLIVSGFAQKGDLNLAKDFFERMPL-----KNLISWNSIIAGYEKN 381

Query: 499 GHIEAARNLIEDMPME---PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
              + A  L   M  E   P+     +++S C    NL +G+ + + +  +   +S    
Sbjct: 382 EDYKGAIQLFSRMQFEGERPDRHTLSSVMSVCTGLVNLYLGKQIHQLVTKIVIPDSPINN 441

Query: 556 LLSNMFAGLGMWNDA 570
            L  M++  G   DA
Sbjct: 442 SLITMYSRCGAIVDA 456


>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 787

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 190/574 (33%), Positives = 305/574 (53%), Gaps = 44/574 (7%)

Query: 84  PFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHG 143
           PF + A+I  +     PK+AL +F  ML  GVS ++ +   V+KAC   G  +  + I G
Sbjct: 211 PF-FTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVG 269

Query: 144 L-LRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
           L ++      +L ++N LI+LY+R G  + AR++FD+M +RD VS+ +++D Y + G++E
Sbjct: 270 LAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLE 329

Query: 203 SARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHG 259
            AR + D MP  ERN +SW +++  + Q    K  +    Q+       ++  ++S+L  
Sbjct: 330 GARRVLDEMP--ERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGA 387

Query: 260 CV-----------------------------------KCGKMDDAQALFDKMPKRDVVSW 284
           C                                    KC ++ DAQ +F  +P++++V W
Sbjct: 388 CASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCW 447

Query: 285 ANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYL 344
            ++I GY+   ++  A  LF +MP R+V + N+++ GY +N   + AL+ F  M      
Sbjct: 448 NSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQ- 506

Query: 345 HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIK 404
            P + +   VL A A L  ++ G  +H  + K     +   G AL DMY+K G ++++ +
Sbjct: 507 SPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKR 566

Query: 405 VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL 464
           VF ++   +   W AMI GLA +G  E +  L  +M    I P++ TF  +L AC+H+GL
Sbjct: 567 VFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGL 626

Query: 465 VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
           V+  +  FE+M+    + P+ +HY CMVD+L RAGH+  A +L+  +  +     W  LL
Sbjct: 627 VEHAMHYFEMMQAC-GISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALL 685

Query: 525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKK 584
           SAC  Y N  +GE  AK L  +D  N++ YVLLSNM+A  G W DA  +R +MK  NLKK
Sbjct: 686 SACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKK 745

Query: 585 LPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
             GCSW+++ G    FF  +     + D+Y MLD
Sbjct: 746 DGGCSWVQIRGQYQAFFSWETKHPLLPDVYEMLD 779



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 105/444 (23%), Positives = 194/444 (43%), Gaps = 83/444 (18%)

Query: 155 FLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPI- 213
           F  + ++  +V+ G +  AR+LFD M  R  VSY +M+D  +K G++  A EL+   P+ 
Sbjct: 149 FAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLC 208

Query: 214 -----------------------------------RERNLISWNSVLNGYAQLKSGLQF- 237
                                               E  L+S      G  +    +   
Sbjct: 209 SVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIV 268

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
              +   + +++L   NS++   ++ G  D A+ +FD+M  RDVVSW  ++D YA+LG +
Sbjct: 269 GLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDL 328

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
           + ARR+ DEMP+R+ V+   ++  + + G + +A+ ++  M  +    P+ +    VL A
Sbjct: 329 EGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLAD-GCRPNISCFSSVLGA 387

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
            A L  +  G  IH    K   S N     ALIDMY KC  + +A  +F  +   ++  W
Sbjct: 388 CASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCW 447

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSI-------------------------------E 446
           N++I+G + +     A +L  +M   ++                                
Sbjct: 448 NSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQS 507

Query: 447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK------LEPELQHYGCMVDILGRAGH 500
           P +ITF+ +L ACA        L   E+ + +H       ++  +     + D+  ++G 
Sbjct: 508 PGEITFSSVLLACA-------SLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGD 560

Query: 501 IEAARNLIEDMPMEPNDVIWRTLL 524
           +++++ +  +MP + NDV W  ++
Sbjct: 561 LDSSKRVFYEMP-KRNDVAWTAMI 583



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 138/313 (44%), Gaps = 51/313 (16%)

Query: 20  LLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L  C +L D+    +IH + +      N  +++ L+  +    C  L + A+ IF+   
Sbjct: 384 VLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCK--CKQLPD-AQMIFYSL- 439

Query: 77  AFREKKDPFLWNAIIKTYSHG---LDPKE----------------------------ALV 105
               +K+   WN++I  YS+    ++ +E                            AL 
Sbjct: 440 ---PQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALK 496

Query: 106 MFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYV 165
            F  ML +G S  + + S VL AC+ L  +E G  +H  + K+     +F+   L  +Y 
Sbjct: 497 SFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYA 556

Query: 166 RCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNS 223
           + G L+ ++++F +M  R+ V++ +MI G  ++G  E +  LF+ M       N  ++ +
Sbjct: 557 KSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLA 616

Query: 224 VLNGYAQLKSGL-QFAWQIFEKMPERDLIS----WNSMLHGCVKCGKMDDAQALFDKM-P 277
           +L  +A   SGL + A   FE M    +      +  M+    + G + +A+ L  K+  
Sbjct: 617 IL--FACSHSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIES 674

Query: 278 KRDVVSWANMIDG 290
           K +  SWA ++  
Sbjct: 675 KSEANSWAALLSA 687



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 35/195 (17%)

Query: 387 VALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE 446
             ++D   K GS+ +A++++ Q    SV  + AMI G  ++ L + A  +  EM    + 
Sbjct: 183 TTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVS 242

Query: 447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARN 506
           P++IT   ++ AC  AG     +    L  + + L+  L     ++ +  R G  +AAR 
Sbjct: 243 PNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARR 302

Query: 507 LIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGM 566
           + ++  ME  DV+                                 S+  L +++A LG 
Sbjct: 303 MFDE--MEVRDVV---------------------------------SWTALLDVYAELGD 327

Query: 567 WNDARRVRSMMKERN 581
              ARRV   M ERN
Sbjct: 328 LEGARRVLDEMPERN 342



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 84/179 (46%), Gaps = 12/179 (6%)

Query: 5   ANYNQPCNSTQSTLLLLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPC 61
           A+   P   T S++LL   C +L  +     +HA++I  G  ++  + T L   ++ S  
Sbjct: 503 ASGQSPGEITFSSVLL--ACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSG- 559

Query: 62  TPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFS 121
               + ++ +F++      K++   W A+I+  +     +E++++F  M+  G++ ++ +
Sbjct: 560 --DLDSSKRVFYEM----PKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQT 613

Query: 122 ASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
              +L ACS  GL+E  +    +++            C++ +  R G+L  A  L  K+
Sbjct: 614 FLAILFACSHSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKI 672


>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 519

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 180/492 (36%), Positives = 277/492 (56%), Gaps = 42/492 (8%)

Query: 141 IHGLLRKVAFGSDLFL--QNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
           I+G    V F  DL L     L+          +A QLF ++   D+  YN MI G  +S
Sbjct: 27  INGFNNNVNFLGDLVLTISTSLVGPTATPTVTNYAHQLFAQIPQPDTFMYNVMIRGSSQS 86

Query: 199 GNIESARELFDSM------------PIRER-------------------------NLISW 221
            N   A  L+  M            P   +                         N +  
Sbjct: 87  PNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTRLFWVNTGSAVHGMVLRLGFGSNAVVR 146

Query: 222 NSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV 281
           N++L  +A+    L  A  +F+   + D+++W+S++ G  + G +  A+ LF++MP+RD+
Sbjct: 147 NTLLVFHAKC-GDLNVATSLFDDSCKGDVVAWSSLIAGYARRGDLKVARKLFNEMPERDL 205

Query: 282 VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
           VSW  MI GY K G ++ AR LFDE P +DVV+ NAM+ GYV  G S +ALE+F+ M C 
Sbjct: 206 VSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSKQALELFNEM-CR 264

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIH-RYLEKDQFSLNGKHGVALIDMYSKCGSIE 400
             + PD+ +L+ +LSA A LG ++ G  +H + +E     L+   G ALIDMY+KCG+I+
Sbjct: 265 AGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLGNALIDMYAKCGNIK 324

Query: 401 NAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460
            ++ VF  I D  V  WN++I G+A+HG G+ +  L   M+R  I P++ITF G+L AC+
Sbjct: 325 ESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNEITFVGVLVACS 384

Query: 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIW 520
           HAG + EG   F+LM   +K+EP ++H GCMVD+LGRAG ++ A   I+ M +EPN +IW
Sbjct: 385 HAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAAKFIDSMKIEPNAIIW 444

Query: 521 RTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580
           RTLL+AC+ + ++ + +   + L  M   +S  YVL+SN++A  G W+ A +VR +M + 
Sbjct: 445 RTLLAACKVHGDVELAKVANEKLFSMRKDHSGDYVLMSNLYASRGEWDGAEKVRKLMDDS 504

Query: 581 NLKKLPGCSWIE 592
            + K+ G S++E
Sbjct: 505 GVTKIRGSSFVE 516



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/455 (28%), Positives = 230/455 (50%), Gaps = 57/455 (12%)

Query: 27  LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTP-----LTEFARYIFFKYHAFREK 81
           L  + QIHA MI  GF  N +    LV + S+S   P     +T +A  +F +      +
Sbjct: 15  LKTLKQIHALMIINGFNNNVNFLGDLVLTISTSLVGPTATPTVTNYAHQLFAQI----PQ 70

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
            D F++N +I+  S   +P  A+ ++  M  + V  D ++   VLKAC+RL  +  G  +
Sbjct: 71  PDTFMYNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTRLFWVNTGSAV 130

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           HG++ ++ FGS+  ++N L+  + +CG L  A  LFD     D V+++S+I GY + G++
Sbjct: 131 HGMVLRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSLIAGYARRGDL 190

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
           + AR+LF+ MP  ER+L+SWN ++ GY + +  ++ A  +F++ P +D++SWN+M+ G V
Sbjct: 191 KVARKLFNEMP--ERDLVSWNVMITGYVK-QGEMESARMLFDEAPVKDVVSWNAMIAGYV 247

Query: 262 KCGKMDDAQALFDKMPKRDV--------------------------------VSWAN--- 286
            CG    A  LF++M +  V                                +S      
Sbjct: 248 VCGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLST 307

Query: 287 -----MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
                +ID YAK G +  +  +F  +  +DV++ N+++ G   +G+  ++L +F  MQ  
Sbjct: 308 LLGNALIDMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQ-R 366

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD-QFSLNGKHGVALIDMYSKCGSIE 400
             + P++ + V VL A +  G ID+G      +  + +   N +H   ++DM  + G ++
Sbjct: 367 TKICPNEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLK 426

Query: 401 NAIKVFE--QIEDGSVDHWNAMINGLAIHGLGELA 433
            A K  +  +IE  ++  W  ++    +HG  ELA
Sbjct: 427 EAAKFIDSMKIEPNAI-IWRTLLAACKVHGDVELA 460


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 184/562 (32%), Positives = 293/562 (52%), Gaps = 50/562 (8%)

Query: 75   YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
            ++ + +K +   WN++I   + G D  EAL  F  +   G+   + S    +K+CS L  
Sbjct: 1971 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 2030

Query: 135  IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
            +  G   H       F +DLF+ + LI +Y +C                           
Sbjct: 2031 LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKC--------------------------- 2063

Query: 195  YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER------ 248
                G ++ AR LFD +P+R  N++SW S++ GY Q +     A  +F+   E       
Sbjct: 2064 ----GQLKDARALFDEIPLR--NVVSWTSMITGYVQNEQA-DNALLLFKDFLEEETEVED 2116

Query: 249  ------DLISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVD 298
                  D +   S+L  C +       + +   + K+     +     ++D YAK G+  
Sbjct: 2117 GNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPL 2176

Query: 299  IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
            +++++FD M ++D ++ N+M+  Y ++G S +ALE+F  M   + +  +  +L  VL A 
Sbjct: 2177 VSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLAC 2236

Query: 359  AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWN 418
            A  G +  G  IH  + K     N   G ++IDMY KCG +E A K F+++++ +V  W 
Sbjct: 2237 AHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWT 2296

Query: 419  AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRI 478
            AM+ G  +HG  + A D+  +M R  ++P+ ITF  +L AC+HAGLV+EG   F  M+  
Sbjct: 2297 AMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHK 2356

Query: 479  HKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEP 538
            + +EP ++HYGCMVD+ GRAG +  A NLI+ M M+P+ V+W +LL ACR ++N+++GE 
Sbjct: 2357 YDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEI 2416

Query: 539  VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVH 598
             A+ L  +D  N   YVLLSN++A  G W D  R+R +MK R L K PG S +EL+G VH
Sbjct: 2417 AAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVH 2476

Query: 599  EFFVRDKSRLQVRDIYYMLDNM 620
             F V DK       IY  L+ +
Sbjct: 2477 VFLVGDKEHPHHEMIYKYLEKL 2498



 Score =  218 bits (554), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 205/377 (54%), Gaps = 20/377 (5%)

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           QIH  + +    +D  L   LI LY   G + +A  LF ++    + ++N +I     +G
Sbjct: 45  QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTING 104

Query: 200 NIESARELFDSM------------PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
             E A  L+ +M            P   +   ++ S+  G     S +++ +        
Sbjct: 105 LSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFS------- 157

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
            D+   N+++    KCG    A  +F+KM  R+VVSW  +I G    G +  ARR+FDE+
Sbjct: 158 GDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEI 217

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
           P ++VV+  AM+ GY+RN    +ALE+F  MQ E  + P++ ++V ++ A  ++G +  G
Sbjct: 218 PSKNVVSWTAMINGYIRNQQPEEALELFKRMQAE-NIFPNEYTMVSLIKACTEMGILTLG 276

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
             IH Y  K+   +    G ALIDMYSKCGSI++AI+VFE +   S+  WN+MI  L +H
Sbjct: 277 RGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVH 336

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           GLG+ A +L  EMER++++PD ITF G+L AC H   VKEG   F  M + + + P  +H
Sbjct: 337 GLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEH 396

Query: 488 YGCMVDILGRAGHIEAA 504
           Y CM ++  R+ +++ A
Sbjct: 397 YECMTELYARSNNLDEA 413



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 215/407 (52%), Gaps = 24/407 (5%)

Query: 14  TQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFF 73
            +  L LL+ CK    + QIHA++I +G   +  LT KL+  +S+            I +
Sbjct: 27  AKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHG---------RIAY 77

Query: 74  KYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
               F + ++P  F WN II+  +     ++AL+++  M+  G++ DKF+   V+KAC+ 
Sbjct: 78  AILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTN 137

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
              I+ G  +HG L K  F  D+F+QN LI  Y +CG+  FA ++F+KM +R+ VS+ ++
Sbjct: 138 FLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTV 197

Query: 192 IDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI 251
           I G +  G+++ AR +FD +P   +N++SW +++NGY + +   + A ++F++M   ++ 
Sbjct: 198 ISGLISCGDLQEARRIFDEIP--SKNVVSWTAMINGYIRNQQPEE-ALELFKRMQAENIF 254

Query: 252 ----SWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRL 303
               +  S++  C + G +   + + D   K      V     +ID Y+K G +  A  +
Sbjct: 255 PNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEV 314

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           F+ MP++ +   N+M+     +G   +AL +F  M+  + + PD  + + VL A   + +
Sbjct: 315 FETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEME-RVNVKPDAITFIGVLCACVHIKN 373

Query: 364 IDKGVA-IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           + +G A   R  +    +   +H   + ++Y++  +++ A K  +++
Sbjct: 374 VKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEV 420


>gi|354805242|gb|AER41656.1| CRR4 [Oryza rufipogon]
          Length = 752

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 182/526 (34%), Positives = 279/526 (53%), Gaps = 67/526 (12%)

Query: 113 NGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF 172
            GV  + F+ + +L+AC+ LGL      +HG + +  FGSD+F+QN L+ +Y RCG    
Sbjct: 105 QGVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGG 164

Query: 173 -------ARQLFDKMGIRDSVSYNSMIDG-----------YVKSGNIESARELFDSMPIR 214
                  ARQ+FD+M           +D            Y+ SG+   A   F++MP  
Sbjct: 165 GGGGVGAARQVFDEM-----------VDRDVVSWNSIVGVYMSSGDATGAMGFFEAMP-- 211

Query: 215 ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFD 274
           ERN++SWN+V+ G+A++   +  A  +F++MP R+ +SWN M+ G    G ++ A+++FD
Sbjct: 212 ERNVVSWNTVVAGFARMGD-MVTARAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFD 270

Query: 275 KMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEI 334
           +M ++DVVSW  M+  YAK+G +D A  LFD MP +++V+ NAM+ GY  N    +AL  
Sbjct: 271 RMDQKDVVSWTAMVSAYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRT 330

Query: 335 FDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYS 394
           F  M  E    PD+A+LV V+SA AQLG ++    I  ++ K    L    G ALIDM++
Sbjct: 331 FQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFA 390

Query: 395 KCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTG 454
           KCG +  A  +F ++E   +  W  MI+G A +GL   A  +   M R  ++ DD  F  
Sbjct: 391 KCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIA 450

Query: 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPME 514
            L ACAH GL++EG   F  M   + ++P ++HYGCMVD+LGRA  IE            
Sbjct: 451 ALAACAHGGLLQEGWSIFNEMVERYNIQPRMEHYGCMVDLLGRAELIEY----------- 499

Query: 515 PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVR 574
                                   V+K +  ++  NSS  VL+SN  A  G W+     R
Sbjct: 500 ------------------------VSKKITELEPFNSSYQVLVSNCSALEGRWDGVIDAR 535

Query: 575 SMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           + M+   ++K+PG S I++   VHEF  +D    + ++IY  +D +
Sbjct: 536 TSMRNWGIEKVPGSSSIQVGSEVHEFLAKDTRHKRRKEIYETVDGL 581


>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
          Length = 924

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 201/604 (33%), Positives = 329/604 (54%), Gaps = 22/604 (3%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+ C TL D+    Q+HA  + + F+K+  + T  +  ++   C  + +  R       
Sbjct: 288 VLKSCATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAK--CNNMQDAQRLF----- 340

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
              E  +   +NA+I  YS   +   AL++F  +  + +  D+ S S  L+AC+ +  + 
Sbjct: 341 DMSENLNLQSYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACATVKGLS 400

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           EGLQ+HGL  K  F  ++ + N  I +Y +C  L+ A ++FD+MG +D+VS+N++I  + 
Sbjct: 401 EGLQLHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGRKDAVSWNAIIAAHE 460

Query: 197 KSGNIESARELFDSMPIR---ERNLISWNSVLNGYA--QLKSGLQFAWQIFEKMPERDLI 251
           ++        +  SM +R   E +  ++ SVL   A   L  G++    I +     +  
Sbjct: 461 QNEERSKTLNILVSM-LRSGMEPDEYTFGSVLKACAGDSLNHGMEIHTTIVKLGMASNPY 519

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
             +S++    KCG +D+A+ + +K+     +  +N    + +   ++  + + D   +  
Sbjct: 520 IGSSLVDMYSKCGMIDEAEKIHNKIFIG--IGDSNTYSEHPE--TIEEPKGIQDRRVQEM 575

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           +V+ NA++ GYV    S  A   F+ M  E+ + PD  +   VL   A L  I  G  IH
Sbjct: 576 IVSWNAIISGYVMRKQSEDAQRFFNRMM-EMGITPDKFTYSTVLDTCANLASIGLGKQIH 634

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
            ++ K +   +      L+DMYSKCG++ ++  +FE+        WNAMI G A HG+GE
Sbjct: 635 AHVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEKAPIRDFVTWNAMICGYAHHGMGE 694

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            A  L   M  ++I P+  TF  LL ACAH GLV+ GL  F +M++ + L+P L+HY  M
Sbjct: 695 EAIKLFESMVLMNIMPNHATFVSLLRACAHMGLVERGLDYFHMMKKEYGLDPRLEHYSNM 754

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACR-NYENLNVGEPVAKHLIGMDSSN 550
           VDILG++G +E A  LI++MP E +DVIWRTLLSAC+ N  N+   E  A  L+ +D  +
Sbjct: 755 VDILGKSGEVEKALELIQEMPFEADDVIWRTLLSACKINRNNVEAAEVAANALLRLDPQD 814

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQV 610
           SS+Y+LLSN++A  GMW+ A  +R+ M+   LKK PGCSW+E+    H F V DK+  + 
Sbjct: 815 SSTYILLSNIYADAGMWDKASELRTAMRSDKLKKEPGCSWVEIRDEFHTFLVGDKAHPRW 874

Query: 611 RDIY 614
           ++IY
Sbjct: 875 KEIY 878



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 149/508 (29%), Positives = 253/508 (49%), Gaps = 57/508 (11%)

Query: 114 GVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFA 173
             SV  FS   V K C++    E G Q H  +    F   +F+ NCL+ LY+ CG L +A
Sbjct: 46  ATSVANFS--FVFKECAKQRAHELGKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLGYA 103

Query: 174 RQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKS 233
            +LFD M +RD VS+N+MI GY  S ++  A   F+ MP R+  ++SWNS+L+G+ Q   
Sbjct: 104 TKLFDGMPLRDVVSWNAMIFGYAASNDMVRASLCFEMMPTRD--VVSWNSMLSGFLQTGE 161

Query: 234 GLQFAWQIFEKMP----ERDLISWNSMLHGC-----VKCGKMDDAQAL---FDKMPKRDV 281
            L+ + ++F +M     E D  S++ +L  C      K G      AL   +D     DV
Sbjct: 162 NLE-SVKVFIEMGRSGVEFDNKSFSVILKVCSILENYKLGTQIHGIALRMGYDT----DV 216

Query: 282 VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
           VS + ++D YAK  R+D +  +F  MP+++ ++ +A++ G V+N +    L++F  MQ +
Sbjct: 217 VSGSALLDMYAKCKRLDESFTVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQ-K 275

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIEN 401
           + +    +    VL + A L  +  G  +H +  K  F  +G    A +DMY+KC ++++
Sbjct: 276 VGVGVSQSIYASVLKSCATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQD 335

Query: 402 AIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461
           A ++F+  E+ ++  +NAMI G +    G  A  L  ++ + S+  D+I+ +G L ACA 
Sbjct: 336 AQRLFDMSENLNLQSYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACAT 395

Query: 462 AGLVKEGLLCFELM------RRIHKLEPELQHYG--------CMV-DILGR--------- 497
              + EGL    L       R I      +  YG        C V D +GR         
Sbjct: 396 VKGLSEGLQLHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGRKDAVSWNAI 455

Query: 498 -AGHIEAAR-----NLIEDM---PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD- 547
            A H +        N++  M    MEP++  + ++L AC   ++LN G  +   ++ +  
Sbjct: 456 IAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLKACAG-DSLNHGMEIHTTIVKLGM 514

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRS 575
           +SN      L +M++  GM ++A ++ +
Sbjct: 515 ASNPYIGSSLVDMYSKCGMIDEAEKIHN 542



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 133/539 (24%), Positives = 236/539 (43%), Gaps = 70/539 (12%)

Query: 3   VSANYNQPCNSTQSTLLLLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSS 59
            S N+ +P  S  +   + ++C   +      Q HA MI +GF     ++  L+  + + 
Sbjct: 38  ASVNHEKPATSVANFSFVFKECAKQRAHELGKQAHAHMIISGFRPTVFVSNCLLQLYINC 97

Query: 60  ----------PCTPLTEFARY--IFFKYHAFRE------------KKDPFLWNAIIKTYS 95
                        PL +   +  + F Y A  +             +D   WN+++  + 
Sbjct: 98  GNLGYATKLFDGMPLRDVVSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSWNSMLSGFL 157

Query: 96  HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLF 155
              +  E++ +F  M  +GV  D  S S++LK CS L   + G QIHG+  ++ + +D+ 
Sbjct: 158 QTGENLESVKVFIEMGRSGVEFDNKSFSVILKVCSILENYKLGTQIHGIALRMGYDTDVV 217

Query: 156 LQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRE 215
             + L+ +Y +C  L+ +  +F  M  ++ +S++++I G V++  ++   ++F  M    
Sbjct: 218 SGSALLDMYAKCKRLDESFTVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQ--- 274

Query: 216 RNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC-----VKCGKMDDAQ 270
                           K G+  +  I+            S+L  C     ++ G    A 
Sbjct: 275 ----------------KVGVGVSQSIYA-----------SVLKSCATLPDLRLGTQLHAH 307

Query: 271 ALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMK 330
           AL     K  +V  A + D YAK   +  A+RLFD     ++ + NAM+ GY +     +
Sbjct: 308 ALKSDFVKDGIVRTATL-DMYAKCNNMQDAQRLFDMSENLNLQSYNAMITGYSQKDNGFR 366

Query: 331 ALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI 390
           AL +F  +  +  L  D+ SL   L A A +  + +G+ +H    K  FS N     A I
Sbjct: 367 ALLLFRKLS-KSSLGFDEISLSGALRACATVKGLSEGLQLHGLATKSNFSRNICVANAFI 425

Query: 391 DMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
           DMY KC +++ A +VF+++       WNA+I     +       ++L+ M R  +EPD+ 
Sbjct: 426 DMYGKCEALDEACRVFDEMGRKDAVSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEY 485

Query: 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY--GCMVDILGRAGHIEAARNL 507
           TF  +L ACA   L   G+   E+   I KL      Y    +VD+  + G I+ A  +
Sbjct: 486 TFGSVLKACAGDSL-NHGM---EIHTTIVKLGMASNPYIGSSLVDMYSKCGMIDEAEKI 540


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 179/565 (31%), Positives = 307/565 (54%), Gaps = 60/565 (10%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++   +W  +I  Y+      EA+ +F  ML+NG   D+++ S +L AC+ LG    G Q
Sbjct: 217 ERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQ 276

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H L  ++   SD    +C     V CG                      ++D Y KS N
Sbjct: 277 LHSLALRLGLESD----SC-----VSCG----------------------LVDMYAKSHN 305

Query: 201 IES---ARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----ISW 253
            +S   ARE+F+ MP  + N+++W ++L+GY Q  S       +F KM    +    I++
Sbjct: 306 GQSLHNAREVFNRMP--KHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITY 363

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDV----VSWANMIDGYAKLGRVDIARRLFDEMPK 309
           +SML  C   G  D  + +     K ++    V    ++  YA+ G ++ AR  FD++ +
Sbjct: 364 SSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYE 423

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCE-LYLHPDDASLVIVLSAIAQLGHIDKGV 368
           +++V+ +  + G  R+         + + Q E + L     +   ++SA A +G + KG 
Sbjct: 424 KNMVSFSGNLDGDGRS-------NTYQDYQIERMELGISTFTFGSLISAAASVGMLTKGQ 476

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            +H    K  F  +   G +L+ MYS+CG + +A +VF+++ D +V  W +MI+GLA HG
Sbjct: 477 RLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHG 536

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
               A +L  +M    ++P+D+T+  +L+AC+HAGLVKEG   F +M++ H L P ++HY
Sbjct: 537 YAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHY 596

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
            CMVD+LGR+G +E A + I +MP + + ++W+TLL AC+ + N+++GE  A H+I ++ 
Sbjct: 597 ACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEP 656

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
            + + YVLLSN++A  G+W+   R+RS+M+++NL K  G SW+ ++  +HEF   D S  
Sbjct: 657 QDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRAGDTSHP 716

Query: 609 QVRDIYYMLDNM--------WTPDS 625
           Q  +IY  L+ +        + PD+
Sbjct: 717 QAEEIYTKLETLIREIKVMGYVPDT 741



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 170/386 (44%), Gaps = 44/386 (11%)

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM--GIRDSVSYNSMIDGY 195
            LQ H L       +D  + N L++LY +C  +  AR +FD M  G+RD VS+ +M    
Sbjct: 68  ALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCL 127

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
            ++G    A  LF      E  L+     L    Q      FA ++F        ++  +
Sbjct: 128 SRNGAEAEALRLFGE--TLEEGLLPNAFTLCAATQAC----FASELFH-------LAGGA 174

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           +L    K G               DV     +ID +AK G +   RR+FD + +R VV  
Sbjct: 175 VLGLVFKLG-----------FWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVW 223

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
             ++  Y ++GYS +A+E+F +M  E    PD  +L  +LSA  +LG    G  +H    
Sbjct: 224 TLLITRYAQSGYSDEAVELFLDM-LENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLAL 282

Query: 376 KDQFSLNGKHGVALIDMYSKC---GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE- 431
           +     +      L+DMY+K     S+ NA +VF ++   +V  W A+++G    G  + 
Sbjct: 283 RLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDN 342

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK--LEPELQHY- 488
               L  +M    I P+ IT++ +L ACA+ G    G       R+IH   ++  L    
Sbjct: 343 QVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSG-------RQIHTHCVKSNLADLN 395

Query: 489 ---GCMVDILGRAGHIEAARNLIEDM 511
                +V +   +G IE AR+  + +
Sbjct: 396 VVGNALVSMYAESGSIEEARHAFDQL 421



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 149/356 (41%), Gaps = 51/356 (14%)

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPK--RDVVACNAMMGGYVRNGYSMKALEIF 335
           + D V   +++  Y+K   V  AR +FD MP   RD+V+  AM     RNG   +AL +F
Sbjct: 81  ETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSRNGAEAEALRLF 140

Query: 336 DNMQCELYLHPDDASLVIVLSA--IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMY 393
                E  L P+  +L     A   ++L H+  G  +    +   +  +   G ALIDM+
Sbjct: 141 GE-TLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSVGCALIDMF 199

Query: 394 SKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
           +K G +    +VF+ + + +V  W  +I   A  G  + A +L ++M     +PD  T +
Sbjct: 200 AKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLS 259

Query: 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA---ARNLIED 510
            +L+AC   G  + G     L  R+  LE +      +VD+  ++ + ++   AR +   
Sbjct: 260 SMLSACTELGSFRLGQQLHSLALRL-GLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNR 318

Query: 511 MP-----------------------------------MEPNDVIWRTLLSACRNYENLNV 535
           MP                                   + PN + + ++L AC N  + + 
Sbjct: 319 MPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDS 378

Query: 536 GEPVAKHLIGMDSSNSSSYVLLSN----MFAGLGMWNDARRVRSMMKERNLKKLPG 587
           G  +  H +    SN +   ++ N    M+A  G   +AR     + E+N+    G
Sbjct: 379 GRQIHTHCV---KSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSG 431



 Score = 38.9 bits (89), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 28/185 (15%)

Query: 27  LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFL 86
           L    ++HA  +  GF  +  +   LV+ +S            Y+      F E  D  +
Sbjct: 472 LTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCG---------YLVDACQVFDEMNDHNV 522

Query: 87  --WNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ--- 140
             W ++I   + HG   + AL +F  M+  GV  +  +   VL ACS  GL++EG +   
Sbjct: 523 ISWTSMISGLAKHGYAAR-ALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFR 581

Query: 141 ----IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMIDGY 195
                HGL+ ++   +      C++ L  R G +E A    ++M  + D++ + +++ G 
Sbjct: 582 MMQKHHGLIPRMEHYA------CMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLL-GA 634

Query: 196 VKSGN 200
            K+ N
Sbjct: 635 CKTHN 639


>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 181/550 (32%), Positives = 299/550 (54%), Gaps = 49/550 (8%)

Query: 111 LDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG-SDLFLQNCLISLYVRCGY 169
           L  G+ VD      +L+ C++    + G  +H  L+   F      + N LI +Y  CG 
Sbjct: 60  LPTGIFVD------LLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMYFECGR 113

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA 229
              AR++FDKM +R+  S+N M+ GY K G++ +AR+LFD M   E++++SWN+++  YA
Sbjct: 114 DVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRM--MEKDVVSWNTIVLAYA 171

Query: 230 Q----------------LKSG------------------LQFAWQIFEKMPE----RDLI 251
           +                L  G                  LQ A Q+  ++       +L+
Sbjct: 172 KQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLV 231

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
             +S++    KCG+M  A+ LFD+M  +D+ +W  ++ GYAK G ++ A  LF +MP+++
Sbjct: 232 LSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKN 291

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
            V+ +A++ GY RN    +AL+ F  M  +  ++P+  +    L A A +  +  G  +H
Sbjct: 292 PVSWSALISGYARNSLGHEALDYFTKMM-KFGINPEQYTFSSCLCACASIAALKHGKQVH 350

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS-VDHWNAMINGLAIHGLG 430
            YL +  F  N     +LIDMYSKCG +E +  VF  + +   V  WN MI+ LA +G G
Sbjct: 351 GYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHG 410

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
           E A  +  +M    ++PD ITF  +L+AC+H+GLV+EGL  F+ M   H + P+ +HY C
Sbjct: 411 EKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSC 470

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           ++D+LGRAG      N +E+M  +P+D +W  LL  CR + N+ +G  VA+ +I +   +
Sbjct: 471 LIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQS 530

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQV 610
           S++YV L++++A LG W    +VR +M E+ ++K  G SWI++    H F   D+     
Sbjct: 531 SAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISWIDVGNKTHSFIASDRLHPLK 590

Query: 611 RDIYYMLDNM 620
            +IY +L+ +
Sbjct: 591 EEIYLLLEQL 600



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/447 (26%), Positives = 220/447 (49%), Gaps = 61/447 (13%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMF--CLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
           +KD   WN I+  Y+      EA+ ++     LD G +   F+  L+L  C +L  ++  
Sbjct: 157 EKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLIL--CVKLKELQLA 214

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
            Q+HG +    F S+L L + ++  Y +CG +  AR LFD+M ++D  ++ +++ GY K 
Sbjct: 215 KQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKW 274

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM------PERDLIS 252
           G++ SA ELF  MP  E+N +SW+++++GYA+   G + A   F KM      PE+   +
Sbjct: 275 GDMNSASELFHQMP--EKNPVSWSALISGYARNSLGHE-ALDYFTKMMKFGINPEQ--YT 329

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           ++S L  C     +   + +   + +     + +  +++ID Y+K G ++ +  +F  M 
Sbjct: 330 FSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMG 389

Query: 309 -KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
            K+DVV  N M+    +NG+  KA+++F++M  E  L PD  + +++LSA +  G + +G
Sbjct: 390 NKQDVVVWNTMISALAQNGHGEKAMQMFNDM-VESGLKPDRITFIVILSACSHSGLVQEG 448

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
           +   + +  D       HG                  VF   E     H++ +I+ L   
Sbjct: 449 LRFFKAMTYD-------HG------------------VFPDQE-----HYSCLIDLL--- 475

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ- 486
           G      +L+ E+E +S +PDD  ++ LL  C     ++ G    ++  R+ +L+P+   
Sbjct: 476 GRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGR---KVAERVIELKPQSSA 532

Query: 487 ---HYGCMVDILGRAGHIEAARNLIED 510
                  +   LG+   +E  R L+++
Sbjct: 533 AYVSLASLYAFLGKWESVEKVRELMDE 559



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 97/429 (22%), Positives = 178/429 (41%), Gaps = 96/429 (22%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPL----TEFA 68
           S    L+L  K K L    Q+H +++  GF+ N  L++ +V +++   C  +    T F 
Sbjct: 197 SFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAK--CGEMRCARTLFD 254

Query: 69  RYIFFKYHAFRE----------------------KKDPFLWNAIIKTYSHGLDPKEALVM 106
             +    HA+                        +K+P  W+A+I  Y+      EAL  
Sbjct: 255 EMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDY 314

Query: 107 FCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVR 166
           F  M+  G++ ++++ S  L AC+ +  ++ G Q+HG L +  F  +  + + LI +Y +
Sbjct: 315 FTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSK 374

Query: 167 CGYLEFARQLFDKMGIR-DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVL 225
           CG LE +  +F  MG + D V +N+MI    ++G+ E A ++F+ M              
Sbjct: 375 CGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDM-------------- 420

Query: 226 NGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWA 285
                ++SGL+         P+R  I++  +L  C   G + +    F  M     V   
Sbjct: 421 -----VESGLK---------PDR--ITFIVILSACSHSGLVQEGLRFFKAMTYDHGV--- 461

Query: 286 NMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLH 345
                                 P ++  +C   + G  R G  ++ +   +NM C+    
Sbjct: 462 ---------------------FPDQEHYSCLIDLLG--RAGCFVELVNELENMSCK---- 494

Query: 346 PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG---VALIDMYSKCGSIENA 402
           PDD     V SA+  +  I   + + R + +    L  +     V+L  +Y+  G  E+ 
Sbjct: 495 PDDR----VWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESV 550

Query: 403 IKVFEQIED 411
            KV E +++
Sbjct: 551 EKVRELMDE 559


>gi|356518777|ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 737

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 182/511 (35%), Positives = 290/511 (56%), Gaps = 14/511 (2%)

Query: 110 MLDNGV--SVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRC 167
           ML N V  SV+K+S   ++  C     ++    +HG L K A   D FL N LI  Y +C
Sbjct: 1   MLPNDVISSVEKYS--FLISKCITARRVKLANAVHGHLIKTALFFDAFLANGLIDAYSKC 58

Query: 168 GYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNG 227
           G  E A + F  +  + + S+N++I  Y K+G  + A  LFD MP  +RN++S+NS+++G
Sbjct: 59  GCEESAHKTFGDLPNKTTRSWNTLISFYSKTGFFDEAHNLFDKMP--QRNVVSYNSLISG 116

Query: 228 YAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANM 287
             Q    +     I     E ++I  N+++    KCG+ + + ++F  MP+R+VVSW +M
Sbjct: 117 NLQWLRQVHGVAVIVGM--EWNVILNNALIDAYGKCGEPNLSFSVFCYMPERNVVSWTSM 174

Query: 288 IDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD 347
           +  Y +  R+D A R+F +MP ++ V+  A++ G+VRNG   +A ++F  M  E  + P 
Sbjct: 175 VVAYTRACRLDEACRVFKDMPVKNTVSWTALLTGFVRNGGCDEAFDVFKQM-LEEGVRPS 233

Query: 348 DASLVIVLSAIAQLGHIDKGVAIHRYL---EKDQFSLNGKHGVALIDMYSKCGSIENAIK 404
             + V V+ A AQ   I +G  +H  +   +K     N     ALIDMY+KCG +++A  
Sbjct: 234 APTFVSVIDACAQEALIGRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYAKCGDMKSAEN 293

Query: 405 VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL 464
           +FE      V  WN +I G A +G GE +  +   M    +EP+ +TF G+L+ C HAGL
Sbjct: 294 LFEMAPMRDVVTWNTLITGFAQNGHGEESLAVFRRMIEAKVEPNHVTFLGVLSGCNHAGL 353

Query: 465 VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP--MEPNDVIWRT 522
             EGL   +LM R + ++P+ +HY  ++D+LGR   +  A +LIE +P  ++ +  +W  
Sbjct: 354 DNEGLQLVDLMERQYGVKPKAEHYALLIDLLGRRNRLMEAMSLIEKVPDGIKNHIAVWGA 413

Query: 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
           +L ACR + NL++    A+ L  ++  N+  YV+L+N++A  G W  A+R+R++MKER L
Sbjct: 414 VLGACRVHGNLDLARKAAEKLFELEPENTGRYVMLANIYAASGKWGGAKRIRNVMKERCL 473

Query: 583 KKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
           +K P CS IEL    HEF  +DK   QV +I
Sbjct: 474 EKEPACSRIELRNARHEFVAKDKFHPQVEEI 504



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 159/373 (42%), Gaps = 90/373 (24%)

Query: 86  LWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
           L NA+I  Y    +P  +  +FC M +  V                              
Sbjct: 139 LNNALIDAYGKCGEPNLSFSVFCYMPERNV------------------------------ 168

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
             V++ S       ++  Y R   L+ A ++F  M ++++VS+ +++ G+V++G  + A 
Sbjct: 169 --VSWTS-------MVVAYTRACRLDEACRVFKDMPVKNTVSWTALLTGFVRNGGCDEAF 219

Query: 206 ELFDSM---PIRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLIS---WNSM 256
           ++F  M    +R  +  ++ SV++  AQ   +  G Q   QI       +L +    N++
Sbjct: 220 DVFKQMLEEGVRP-SAPTFVSVIDACAQEALIGRGKQVHGQIIRGDKSGNLFNVYVCNAL 278

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
           +    KCG M  A+ LF+  P RDVV+W  +I G+A+                       
Sbjct: 279 IDMYAKCGDMKSAENLFEMAPMRDVVTWNTLITGFAQ----------------------- 315

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
                   NG+  ++L +F  M  E  + P+  + + VLS     G  ++G+ +   +E+
Sbjct: 316 --------NGHGEESLAVFRRM-IEAKVEPNHVTFLGVLSGCNHAGLDNEGLQLVDLMER 366

Query: 377 DQFSLNGK--HGVALIDMYSKCGSIENAIKVFEQIEDGSVDH---WNAMINGLAIHG--- 428
            Q+ +  K  H   LID+  +   +  A+ + E++ DG  +H   W A++    +HG   
Sbjct: 367 -QYGVKPKAEHYALLIDLLGRRNRLMEAMSLIEKVPDGIKNHIAVWGAVLGACRVHGNLD 425

Query: 429 LGELAFDLLMEME 441
           L   A + L E+E
Sbjct: 426 LARKAAEKLFELE 438



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 139/281 (49%), Gaps = 32/281 (11%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           K+   W A++  +       EA  +F  ML+ GV     +   V+ AC++  LI  G Q+
Sbjct: 197 KNTVSWTALLTGFVRNGGCDEAFDVFKQMLEEGVRPSAPTFVSVIDACAQEALIGRGKQV 256

Query: 142 HG-LLRKVAFGS--DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
           HG ++R    G+  ++++ N LI +Y +CG ++ A  LF+   +RD V++N++I G+ ++
Sbjct: 257 HGQIIRGDKSGNLFNVYVCNALIDMYAKCGDMKSAENLFEMAPMRDVVTWNTLITGFAQN 316

Query: 199 GNIESARELFDSM--PIRERNLISWNSVLNG--YAQLKS-GLQFAWQIFEKM----PERD 249
           G+ E +  +F  M     E N +++  VL+G  +A L + GLQ    + E+     P+ +
Sbjct: 317 GHGEESLAVFRRMIEAKVEPNHVTFLGVLSGCNHAGLDNEGLQLV-DLMERQYGVKPKAE 375

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMP---KRDVVSWANMIDGYAKLGRVDIAR----R 302
             +    L G  +  ++ +A +L +K+P   K  +  W  ++      G +D+AR    +
Sbjct: 376 HYALLIDLLG--RRNRLMEAMSLIEKVPDGIKNHIAVWGAVLGACRVHGNLDLARKAAEK 433

Query: 303 LFDEMPKR--------DVVACNAMMGG--YVRNGYSMKALE 333
           LF+  P+         ++ A +   GG   +RN    + LE
Sbjct: 434 LFELEPENTGRYVMLANIYAASGKWGGAKRIRNVMKERCLE 474


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 172/474 (36%), Positives = 269/474 (56%), Gaps = 35/474 (7%)

Query: 161 ISLYVRCGYLEFARQLFDKMG----IRDSVSYNSMID--GYVKSGNIESARELFDSMPIR 214
           + L  RC  +E  RQ+  +M     I D +  + ++       SG++  AR +FD   I 
Sbjct: 22  LHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDR--IF 79

Query: 215 ERNLISWNSVLNGYAQLKSG----LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQ 270
             N   WN+++ GY+  K      L +   ++  +P  +  ++  +L  C     +++ Q
Sbjct: 80  RPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVP-HNAYTFPFLLKACSSMSALEETQ 138

Query: 271 ALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNG 326
            +   + K     ++ +  ++++ Y+K G +  AR LFD++ +RD               
Sbjct: 139 QIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT-------------- 184

Query: 327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG 386
              +AL +F  MQ    +  D+ +LV  L A A LG +D+G  IH Y++K +  ++   G
Sbjct: 185 ---EALNLFHRMQTA-GIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILG 240

Query: 387 VALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE 446
             LIDMY+KCG +E AI+VF ++E+  V  W AMI+G AIHG G  A +  M+M+   +E
Sbjct: 241 CVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVE 300

Query: 447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARN 506
           P+ +TFTG+L AC+HAGLV E  L FE M RIH  +P ++HYGCMVD+LGRAG ++ A  
Sbjct: 301 PNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEE 360

Query: 507 LIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGM 566
           LIE+MP++PN  IW  LL+AC  + NL +G+ + K LI +D  +   Y+ L+++ A  G 
Sbjct: 361 LIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGE 420

Query: 567 WNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           WN A RVR  MKE+ + KLPGCS I + G  HEF   D+S  Q+++I +ML+ +
Sbjct: 421 WNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQI 474



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 120/440 (27%), Positives = 209/440 (47%), Gaps = 68/440 (15%)

Query: 4   SANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTP 63
           ++  +   N+ Q TL LL++C  + ++ QIH +M+ TG I +    +KL+A F +SP + 
Sbjct: 9   TSQLSSESNAAQ-TLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLA-FCASPNSG 66

Query: 64  LTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSAS 123
              +AR +F +   FR   + F+WN +I+ YS+  +P+EAL+++  ML + V  + ++  
Sbjct: 67  SLAYARTVFDRI--FR--PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFP 122

Query: 124 LVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183
            +LKACS +  +EE  QIH  + K+ FGS+++  N L+++Y + G ++ AR LFD++  R
Sbjct: 123 FLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQR 182

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNL--ISWNSVLNGYAQLKSGLQFAWQI 241
           D+ + N                 LF  M      L  ++  S L   A L    Q  W  
Sbjct: 183 DTEALN-----------------LFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKW-- 223

Query: 242 FEKMPERDLISWNSMLHGCV------KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG 295
                ++  I  + +L GCV      KCG +++A  +F KM ++ V  W  MI GYA  G
Sbjct: 224 IHAYIKKHEIEIDPIL-GCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHG 282

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
           R                                 +ALE F  MQ    + P+  +   +L
Sbjct: 283 R-------------------------------GREALEWFMKMQTA-GVEPNQMTFTGIL 310

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQ-FSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGS 413
           +A +  G + +   +   +E+   F  + +H   ++D+  + G ++ A ++ E +    +
Sbjct: 311 TACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPN 370

Query: 414 VDHWNAMINGLAIHGLGELA 433
              W A++N   IHG  EL 
Sbjct: 371 AAIWGALLNACHIHGNLELG 390



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 2/130 (1%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG- 138
           E+K   +W A+I  Y+     +EAL  F  M   GV  ++ + + +L ACS  GL+ E  
Sbjct: 264 EEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAK 323

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS-YNSMIDGYVK 197
           L    + R   F   +    C++ L  R G L+ A +L + M ++ + + + ++++    
Sbjct: 324 LLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHI 383

Query: 198 SGNIESAREL 207
            GN+E  +++
Sbjct: 384 HGNLELGKQI 393


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 197/584 (33%), Positives = 296/584 (50%), Gaps = 18/584 (3%)

Query: 47  HLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVM 106
           HL  K +  +S+S      + AR++F K      + D   W  +I   +      EA+  
Sbjct: 12  HLALKFIKVYSNSG---DLQRARHLFDKI----PQPDLPTWTILISALTKHGRSLEAIQY 64

Query: 107 FC-LMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYV 165
           +      N V  DK     V KAC+ L  +    ++H    +  F SD+ L N LI +Y 
Sbjct: 65  YNDFRHKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYG 124

Query: 166 RCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR-ER-NLISWNS 223
           +C   E AR +F+ M  RD +S+ SM   YV  G +  A   F  M +  ER N ++ +S
Sbjct: 125 KCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSS 184

Query: 224 VL---NGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRD 280
           +L        LKSG +    +       ++   +++++    C  +  AQ +FD M +RD
Sbjct: 185 ILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRD 244

Query: 281 VVSWANMIDGYAKLGRVDIARRLFDEMPKRDV----VACNAMMGGYVRNGYSMKALEIFD 336
            VSW  +I  Y      +    +F  M    V     + NA++GG ++NG + KALE+  
Sbjct: 245 TVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLS 304

Query: 337 NMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC 396
            MQ   +  P+  ++  VL A   L  +  G  IH Y+ +  F  +     AL+ MY+KC
Sbjct: 305 RMQNSGF-KPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKC 363

Query: 397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLL 456
           G +E + +VF  +       WN MI   ++HG GE A  L  EM    + P+ +TFTG+L
Sbjct: 364 GDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVL 423

Query: 457 NACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPN 516
           + C+H+ LV EGLL F+ M R H +EP+  H+ CMVD+L RAG +E A   I+ MP+EP 
Sbjct: 424 SGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPT 483

Query: 517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSM 576
              W  LL  CR Y+N+ +G   A  L  ++S N  +YVLLSN+     +W++A   R +
Sbjct: 484 AGAWGALLGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKL 543

Query: 577 MKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           M++R + K PGCSWI++   VH F V DKS  Q  +IY  LD M
Sbjct: 544 MRDRGVTKNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYM 587



 Score = 45.4 bits (106), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 20/163 (12%)

Query: 374 LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
           L K   SL     +  I +YS  G ++ A  +F++I    +  W  +I+ L  HG    A
Sbjct: 2   LSKLPTSLPPHLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEA 61

Query: 434 FDLLMEME-RLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC-- 490
                +   +  +EPD +    +  ACA    V          +R+H  E  ++   C  
Sbjct: 62  IQYYNDFRHKNCVEPDKLLLLSVAKACASLRDVMNA-------KRVH--EDAIRFGFCSD 112

Query: 491 ------MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSAC 527
                 ++D+ G+    E AR + E MP    DVI  T +++C
Sbjct: 113 VLLGNALIDMYGKCRCSEGARLVFEGMPFR--DVISWTSMASC 153


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 199/669 (29%), Positives = 329/669 (49%), Gaps = 87/669 (13%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSP--------------------CTPLT------- 65
           +HA MI +GF    H   +L+  +  S                      T +T       
Sbjct: 35  VHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGN 94

Query: 66  -EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL 124
            E  R IF     +   +D   +NA+I  Y+H  D   AL +F  M  +    D F+ + 
Sbjct: 95  LELGREIFNGTPLY--MRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTS 152

Query: 125 VLKACSR-LGLIEEGLQIHGLLRKVAFGS-DLFLQNCLISLYVR--------CGYLEFAR 174
           VL A    +G  ++  Q+H  + K   G     + N L+S+YV+        C  +  AR
Sbjct: 153 VLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSAR 212

Query: 175 QLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG 234
           +LFD+M  RD +++ +MI GYV++ ++  ARE+F++M   E    +WN++++GY      
Sbjct: 213 KLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMV--ENLGAAWNAMISGYVHCGC- 269

Query: 235 LQFAWQIFEKMP----ERDLISWNSMLHGCVKCG-------------------------- 264
            Q A  +  KM     + D I++ +++  C   G                          
Sbjct: 270 FQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLS 329

Query: 265 -------------KMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
                        K+D+A+ +F  MP R++++W  ++ GY   GR++ A+  F+EMP ++
Sbjct: 330 VSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKN 389

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           ++    M+ G  +NG+  + L++F  M+ + +  P D +    L+A + LG ++ G  +H
Sbjct: 390 LLTLTVMISGLAQNGFGDEGLKLFKQMRLDGF-EPCDFAFAGALTACSVLGALENGRQLH 448

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
             L    +  +   G A+I MY+KCG +E A  VF  +    +  WN+MI  L  HG G 
Sbjct: 449 AQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGV 508

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            A +L  +M +  + PD ITF  +L AC+HAGLV++G   F  M   + + P   HY  M
Sbjct: 509 KAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARM 568

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551
           VD+  RAG    AR +I+ MP +P   +W  LL+ CR + N+++G   A+ L  +   N 
Sbjct: 569 VDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQND 628

Query: 552 SSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVR 611
            +YVLLSN++A +G WN+  +VR +M+++ ++K P CSWIE+E  VH F V D    +V 
Sbjct: 629 GTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVL 688

Query: 612 DIYYMLDNM 620
            +Y  L+ +
Sbjct: 689 SVYRYLEQL 697


>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
          Length = 523

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 180/511 (35%), Positives = 279/511 (54%), Gaps = 74/511 (14%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG----VSVDKFSASLVLKACSRLGLIE 136
           + D F++N +I+  +H   P++A+ ++  ML  G    V  DK +   VL+AC+ +G  +
Sbjct: 40  RPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGD 99

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G+Q+H  + K    SD F++                               N++I  + 
Sbjct: 100 TGVQVHAHVVKAGCESDAFVK-------------------------------NALIGMHA 128

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
             GN+  A  LFD    R R                                D ++W++M
Sbjct: 129 SCGNLGIAAALFDG---RARE-------------------------------DAVAWSAM 154

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
           + GC + G +  A+ LFD+ P +D+VSW  MI  YAK G + +AR LFD++P+RDVV+ N
Sbjct: 155 ITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWN 214

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
            M+ GYVR G  + ALE+F+ MQ  +   PD  +++ +LSA A  G +D G  +H  L  
Sbjct: 215 VMISGYVRCGSHLHALELFEQMQ-RMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLS- 272

Query: 377 DQFSLNGKH---GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
           D FS NG     G ALIDMY+KCGS+++A +VF  + D  V  WN+++ GLA+HG    +
Sbjct: 273 DMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLES 332

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493
            D+  +M +  + PD+ITF  +L AC+H G+V +G   F LM+  +++EP ++HYGCMVD
Sbjct: 333 IDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVD 392

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS 553
           +LGRAG ++ A   I+ M  EPN VIWRTLLSACR +  + + +   + L+   +  S  
Sbjct: 393 MLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDESGD 452

Query: 554 YVLLSNMFAGLGMWNDARRVRSMMKERNLKK 584
           YVLLSN++A +G W  + ++R +M +  + K
Sbjct: 453 YVLLSNIYASVGEWFGSEKMRKLMDDSGVNK 483


>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 181/552 (32%), Positives = 300/552 (54%), Gaps = 49/552 (8%)

Query: 109 LMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG-SDLFLQNCLISLYVRC 167
           + L  G+ VD      +L+ C++    + G  +H  L+   F      + N LI +Y  C
Sbjct: 58  IRLPTGIFVD------LLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMYFEC 111

Query: 168 GYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNG 227
           G    AR++FDKM +R+  S+N M+ GY K G++ +AR+LFD M   E++++SWN+++  
Sbjct: 112 GRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRM--MEKDVVSWNTIVLA 169

Query: 228 YAQ----------------LKSG------------------LQFAWQIFEKMPE----RD 249
           YA+                L  G                  LQ A Q+  ++       +
Sbjct: 170 YAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSN 229

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
           L+  +S++    KCG+M  A+ LFD+M  +D+ +W  ++ GYAK G ++ A  LF +MP+
Sbjct: 230 LVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPE 289

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           ++ V+ +A++ GY RN    +AL+ F  M  +  ++P+  +    L A A +  +  G  
Sbjct: 290 KNPVSWSALISGYARNSLGHEALDYFTKMM-KFGINPEQYTFSSCLCACASIAALKHGKQ 348

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS-VDHWNAMINGLAIHG 428
           +H YL +  F  N     +LIDMYSKCG +E +  VF  + +   V  WN MI+ LA +G
Sbjct: 349 VHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNG 408

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
            GE A  +  +M    ++PD ITF  +L+AC+H+GLV+EGL  F+ M   H + P+ +HY
Sbjct: 409 HGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHY 468

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
            C++D+LGRAG      N +E+M  +P+D +W  LL  CR + N+ +G  VA+ +I +  
Sbjct: 469 ACLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKP 528

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
            +S++YV L++++A LG W    +VR +M E+ ++K  G SWI++    H F   D+   
Sbjct: 529 QSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISWIDVGNKTHSFIASDRLHP 588

Query: 609 QVRDIYYMLDNM 620
              +IY +L+ +
Sbjct: 589 LKEEIYLLLEQL 600



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 114/448 (25%), Positives = 216/448 (48%), Gaps = 63/448 (14%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMF--CLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
           +KD   WN I+  Y+      EA+ ++     LD G +   F+  L+L  C +L  ++  
Sbjct: 157 EKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLIL--CVKLKELQLA 214

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
            Q+HG +    F S+L L + ++  Y +CG +  AR LFD+M ++D  ++ +++ GY K 
Sbjct: 215 KQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKW 274

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM------PERDLIS 252
           G++ SA ELF  MP  E+N +SW+++++GYA+   G + A   F KM      PE+   +
Sbjct: 275 GDMNSASELFHQMP--EKNPVSWSALISGYARNSLGHE-ALDYFTKMMKFGINPEQ--YT 329

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           ++S L  C     +   + +   + +     + +  +++ID Y+K G ++ +  +F  M 
Sbjct: 330 FSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMG 389

Query: 309 -KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
            K+DVV  N M+    +NG+  KA+++F++M  E  L PD  + +++LSA +  G + +G
Sbjct: 390 NKQDVVVWNTMISALAQNGHGEKAMQMFNDM-VESGLKPDRITFIVILSACSHSGLVQEG 448

Query: 368 VAIHRYLEKDQFSL-NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           +   + +  D     + +H   LID+  + G                             
Sbjct: 449 LRFFKAMTYDHGVFPDQEHYACLIDLLGRAGCF--------------------------- 481

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
                   +L+ E+E +S +PDD  ++ LL  C     ++ G    ++  R+ +L+P+  
Sbjct: 482 -------VELVNELENMSCKPDDRVWSALLGVCRIHNNIELGR---KVAERVIELKPQSS 531

Query: 487 ----HYGCMVDILGRAGHIEAARNLIED 510
                   +   LG+   +E  R L+++
Sbjct: 532 AAYVSLASLYAFLGKWESVEKVRELMDE 559



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 99/429 (23%), Positives = 178/429 (41%), Gaps = 96/429 (22%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPL----TEFA 68
           S    L+L  K K L    Q+H +++  GF+ N  L++ +V ++S   C  +    T F 
Sbjct: 197 SFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSK--CGEMRCARTLFD 254

Query: 69  RYIFFKYHAFRE----------------------KKDPFLWNAIIKTYSHGLDPKEALVM 106
             +    HA+                        +K+P  W+A+I  Y+      EAL  
Sbjct: 255 EMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDY 314

Query: 107 FCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVR 166
           F  M+  G++ ++++ S  L AC+ +  ++ G Q+HG L +  F  +  + + LI +Y +
Sbjct: 315 FTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSK 374

Query: 167 CGYLEFARQLFDKMGIR-DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVL 225
           CG LE +  +F  MG + D V +N+MI    ++G+ E A ++F+ M              
Sbjct: 375 CGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDM-------------- 420

Query: 226 NGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWA 285
                ++SGL+         P+R  I++  +L  C   G + +    F  M     V   
Sbjct: 421 -----VESGLK---------PDR--ITFIVILSACSHSGLVQEGLRFFKAMTYDHGV--- 461

Query: 286 NMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLH 345
                                 P ++  AC   + G  R G  ++ +   +NM C+    
Sbjct: 462 ---------------------FPDQEHYACLIDLLG--RAGCFVELVNELENMSCK---- 494

Query: 346 PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG---VALIDMYSKCGSIENA 402
           PDD     V SA+  +  I   + + R + +    L  +     V+L  +Y+  G  E+ 
Sbjct: 495 PDDR----VWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESV 550

Query: 403 IKVFEQIED 411
            KV E +++
Sbjct: 551 EKVRELMDE 559


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 193/603 (32%), Positives = 307/603 (50%), Gaps = 48/603 (7%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+ C  L  V     IH  ++  G + +  + + LV  ++        EF   +  K  
Sbjct: 112 VLKACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKC-----NEFECAV--KLF 164

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
                KD   WN +I  Y      +EAL  F +M   G   D  + +  + +C+RL  ++
Sbjct: 165 DEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLD 224

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G +IH  L    F  D F+   L+ +Y +CG LE A ++F++M  +  V++NSMI+GY 
Sbjct: 225 RGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYG 284

Query: 197 KSGNIESARELFDSM---PIRERNLISWNSVL--NGYAQLKSGLQFAWQIFEKMPERDLI 251
             G+  S  +LF  M    ++       ++++  +  AQL  G      I     + D+ 
Sbjct: 285 FKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIF 344

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
             +S++    KCGK++ A+ +F  MPK   VSW  MI GY   G++  A RLF EM K  
Sbjct: 345 LNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKS- 403

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
                                          ++ PD  +   VL+A +QL  ++KG  IH
Sbjct: 404 -------------------------------FVEPDAITFTSVLAACSQLAALEKGREIH 432

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
             + +     N     AL+DMY+KCG++E A  VF+ + +  +  W +MI     HG   
Sbjct: 433 NLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVY 492

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            A +L  EM + +++PD +TF  +L+AC+HAGLV +GL  F  M  ++ + P ++HY C+
Sbjct: 493 EALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRIEHYSCL 552

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDV-IWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           + +LGRAG +  A  +++  P   +D  +  TL SACR ++NL++G  +A++LI  D  +
Sbjct: 553 ITLLGRAGRLHEAYEILQSNPEISDDFQLLSTLFSACRLHKNLDLGVEIAENLIDKDPDD 612

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQV 610
           SS+Y++LSNM+A  G W++ R VRS MK+  LKK PGCSWIE+   +  FFV D S   +
Sbjct: 613 SSTYIILSNMYASFGKWDEVRMVRSKMKDLGLKKNPGCSWIEINEKIVPFFVEDNSHYHL 672

Query: 611 RDI 613
             I
Sbjct: 673 EGI 675



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 132/517 (25%), Positives = 239/517 (46%), Gaps = 64/517 (12%)

Query: 25  KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDP 84
           K+L     +H +++T G   + ++   L++ + S  C  L ++A+      + F   ++P
Sbjct: 17  KSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVS--CN-LFDYAK------NVFDVIENP 67

Query: 85  F---LWNAIIKTYSHGLDPKEALVMF-CLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           F   L N ++  Y+      EAL +F  LM    +  D ++   VLKAC  L  +  G  
Sbjct: 68  FEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQM 127

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           IH  L K     D+ + + L+ +Y +C   E A +LFD+M  +D   +N++I  Y +SG 
Sbjct: 128 IHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGK 187

Query: 201 IESARELFDSMPI--RERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNS 255
            E A   F  M     E + ++  + ++  A+   L  G +   ++       D     +
Sbjct: 188 FEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAA 247

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           ++    KCG+++ A  +F++MP + VV+W +MI+GY   G               D ++C
Sbjct: 248 LVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKG---------------DGISC 292

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
                           +++F  M  E  + P   +L   L A +Q   + +G  +H Y+ 
Sbjct: 293 ----------------IQLFKRMYSE-GVKPTLTTLTSTLMACSQSAQLLEGKFVHGYII 335

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           +++   +     +L+D+Y KCG +E+A  +F+ +   +   WN MI+G    G    A  
Sbjct: 336 RNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALR 395

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH------YG 489
           L  EM +  +EPD ITFT +L AC+    +++G       R IH L  E          G
Sbjct: 396 LFGEMSKSFVEPDAITFTSVLAACSQLAALEKG-------REIHNLIVERNLGNNEVVMG 448

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
            ++D+  + G +E A  + + +P E + V W ++++A
Sbjct: 449 ALLDMYAKCGAVEEAFGVFKCLP-ERDLVSWTSMITA 484



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 118/469 (25%), Positives = 219/469 (46%), Gaps = 48/469 (10%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +L+A      +++G  +H  +  +   +D+++   LISLYV C   ++A+ +FD +    
Sbjct: 9   LLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIENPF 68

Query: 185 SVSY-NSMIDGYVKSGNIESARELFDSM---PIRERNLISWNSVLNGYAQLKS---GLQF 237
            +S  N ++ GY ++   + A  LFD +   P  + +  ++ SVL     L+    G   
Sbjct: 69  EISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMI 128

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
              + ++    D++  +S++    KC + + A  LFD+MP +DV  W  +I  Y + G+ 
Sbjct: 129 HTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKF 188

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
           + A R F  M                R G+                  PD  ++   +S+
Sbjct: 189 EEALRYFGMMR---------------RFGF-----------------EPDSVTITTAISS 216

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
            A+L  +D+G  IH+ L    F ++     AL+DMY KCG +E AI+VFEQ+ + +V  W
Sbjct: 217 CARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAW 276

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
           N+MING    G G     L   M    ++P   T T  L AC+ +  + EG      + R
Sbjct: 277 NSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIR 336

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA----CRNYENL 533
            ++++P++     ++D+  + G +E+A  + + MP +   V W  ++S      + ++ L
Sbjct: 337 -NRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMP-KTTTVSWNVMISGYVTEGKLFDAL 394

Query: 534 NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
            +   ++K  +  D+   +S +   +  A L      R + +++ ERNL
Sbjct: 395 RLFGEMSKSFVEPDAITFTSVLAACSQLAAL---EKGREIHNLIVERNL 440



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 133/296 (44%), Gaps = 28/296 (9%)

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMP----KRDVVSWANMIDGYAKLGRVDIA 300
           M  R LI    +L   V    +   + L  K+     + DV    N+I  Y      D A
Sbjct: 1   MDARKLIP---LLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYA 57

Query: 301 RRLFDEMPKR-DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           + +FD +    ++  CN +M GY RN    +AL +FD + C   L PD  +   VL A  
Sbjct: 58  KNVFDVIENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACG 117

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
            L  +  G  IH  L K+   ++   G +L+ MY+KC   E A+K+F+++ D  V  WN 
Sbjct: 118 GLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNT 177

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           +I+     G  E A      M R   EPD +T T  +++CA        LL  +  R IH
Sbjct: 178 VISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCAR-------LLDLDRGREIH 230

Query: 480 KLEPELQHYG---------CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           K   EL + G          +VD+ G+ G +E A  + E MP     V W ++++ 
Sbjct: 231 K---ELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMP-NKTVVAWNSMING 282


>gi|334185512|ref|NP_188784.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274363|sp|Q9LVF9.1|PP245_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g21470
 gi|11994382|dbj|BAB02341.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642992|gb|AEE76513.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 182/512 (35%), Positives = 300/512 (58%), Gaps = 14/512 (2%)

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS-RLGLIEEGLQIHGLLRKV 148
           +IK +     P +ALV++  +   GV    +   L+L+AC+  +  +  G  +H    K 
Sbjct: 17  LIKNHISRGSPIQALVLYGGIRRRGVYFPGW-VPLILRACACVVPRVVLGKLLHSESIKF 75

Query: 149 AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELF 208
              SD+ + + LIS+Y +CG +  AR++FD+M  R+  ++N+MI GY+ +G+   A  LF
Sbjct: 76  GVCSDVMVGSSLISMYGKCGCVVSARKVFDEMPERNVATWNAMIGGYMSNGDAVLASGLF 135

Query: 209 DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP--ERDLISWNSMLHGCVKCGKM 266
           + + +  RN ++W  ++ GY + +  ++ A ++FE+MP   +++ +W+ ML   V   KM
Sbjct: 136 EEISVC-RNTVTWIEMIKGYGK-RIEIEKARELFERMPFELKNVKAWSVMLGVYVNNRKM 193

Query: 267 DDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNG 326
           +DA+  F+ +P+++   W+ M+ GY ++G V  AR +F  +  RD+V  N ++ GY +NG
Sbjct: 194 EDARKFFEDIPEKNAFVWSLMMSGYFRIGDVHEARAIFYRVFARDLVIWNTLIAGYAQNG 253

Query: 327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG 386
           YS  A++ F NMQ E Y  PD  ++  +LSA AQ G +D G  +H  +      LN    
Sbjct: 254 YSDDAIDAFFNMQGEGY-EPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIELNQFVS 312

Query: 387 VALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE 446
            ALIDMY+KCG +ENA  VFE I   SV   N+MI+ LAIHG G+ A ++   ME L ++
Sbjct: 313 NALIDMYAKCGDLENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLK 372

Query: 447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARN 506
           PD+ITF  +L AC H G + EGL  F  M +   ++P ++H+GC++ +LGR+G ++ A  
Sbjct: 373 PDEITFIAVLTACVHGGFLMEGLKIFSEM-KTQDVKPNVKHFGCLIHLLGRSGKLKEAYR 431

Query: 507 LIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY-----VLLSNMF 561
           L+++M ++PND +   LL AC+ + +  + E V K +I    S ++SY       +SN++
Sbjct: 432 LVKEMHVKPNDTVLGALLGACKVHMDTEMAEQVMK-IIETAGSITNSYSENHLASISNLY 490

Query: 562 AGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
           A    W  A  +R  M++R L+K PG S + L
Sbjct: 491 AHTERWQTAEALRVEMEKRGLEKSPGLSSLVL 522



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 105/217 (48%), Gaps = 15/217 (6%)

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           AR IF++  A    +D  +WN +I  Y+      +A+  F  M   G   D  + S +L 
Sbjct: 227 ARAIFYRVFA----RDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILS 282

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           AC++ G ++ G ++H L+       + F+ N LI +Y +CG LE A  +F+ + +R    
Sbjct: 283 ACAQSGRLDVGREVHSLINHRGIELNQFVSNALIDMYAKCGDLENATSVFESISVRSVAC 342

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQLKSG-LQFAWQIFEK 244
            NSMI      G  + A E+F +M   +   + I++ +VL   A +  G L    +IF +
Sbjct: 343 CNSMISCLAIHGKGKEALEMFSTMESLDLKPDEITFIAVLT--ACVHGGFLMEGLKIFSE 400

Query: 245 MPERDLISWNSMLHGCV-----KCGKMDDAQALFDKM 276
           M  +D +  N    GC+     + GK+ +A  L  +M
Sbjct: 401 MKTQD-VKPNVKHFGCLIHLLGRSGKLKEAYRLVKEM 436


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 181/550 (32%), Positives = 313/550 (56%), Gaps = 28/550 (5%)

Query: 86  LWNAIIKTYSHGLDPKEALVMFCLMLDNG---VSVDKFSASL---------VLKACSRLG 133
           L++  +++ S  +    +L  F  + ++G    + D F++ +         +L++C +LG
Sbjct: 17  LYSFTVRSLSMKISSSASLQEFTSLCNDGRIKQAYDTFTSEIWSDPSLFSHLLQSCIKLG 76

Query: 134 LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMID 193
            +  G Q+H L+       D F+ N L++ Y + G  + +  LF  M  R+ +S+N +I+
Sbjct: 77  SLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMPRRNVMSFNILIN 136

Query: 194 GYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM------PE 247
           GY++ G++ESA++LFD M   ERN+ +WN+++ G  Q +   Q A  +F++M      P 
Sbjct: 137 GYLQLGDLESAQKLFDEMS--ERNIATWNAMIAGLTQFEFNKQ-ALSLFKEMYGLGFLP- 192

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRL 303
            D  +  S+L GC     +   Q +   + K       V  +++   Y K G +    +L
Sbjct: 193 -DEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKL 251

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
              MP R VVA N ++ G  +NG   + L  ++ M+   +  PD  + V VLSA ++L  
Sbjct: 252 IKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGF-RPDKITFVSVLSACSELAT 310

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           + +G  IH  + K   S       +LI MYS+ G +E++IK F   E+  V  W++MI  
Sbjct: 311 LGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAA 370

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
              HG GE A +L  +ME L +E +++TF  LL AC+H+GL ++G   F+LM + +KL+P
Sbjct: 371 YGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKP 430

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
            ++HY C+VD+LGRAG +E A  +I  MP++P+ +IW+TLL+AC+ ++   + E +++ +
Sbjct: 431 RIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERISEEI 490

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVR 603
           I +D  +++SYVLLSN+ A    W +  ++R  M++R+++K PG SW+EL+ +VH+F + 
Sbjct: 491 IKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLVHQFSMG 550

Query: 604 DKSRLQVRDI 613
           DKS  Q  +I
Sbjct: 551 DKSHPQYFEI 560



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 167/391 (42%), Gaps = 36/391 (9%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKL-------------VASFSSSPCTP 63
           LL+ C  L  +    Q+H+ +IT+G  K+  ++  L             +  FS+ P   
Sbjct: 68  LLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMPRRN 127

Query: 64  LTEFARYI--FFKYHAFREKKDPF---------LWNAIIKTYSHGLDPKEALVMFCLMLD 112
           +  F   I  + +       +  F          WNA+I   +     K+AL +F  M  
Sbjct: 128 VMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYG 187

Query: 113 NGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF 172
            G   D+F+   VL+ C+ L  +  G ++H  L K  F     + + L  +Y++ G L  
Sbjct: 188 LGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSD 247

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQ 230
             +L   M IR  V++N++I G  ++G  E     ++ M +     + I++ SVL+  ++
Sbjct: 248 GEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSE 307

Query: 231 LKS---GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANM 287
           L +   G Q   ++ +      L   +S++    + G ++D+   F      DVV W++M
Sbjct: 308 LATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSM 367

Query: 288 IDGYAKLGRVDIARRLFDEMP----KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELY 343
           I  Y   GR + A  LF +M     + + V   +++     +G   K  E FD M  +  
Sbjct: 368 IAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYK 427

Query: 344 LHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
           L P       V+  + + G +++   + R +
Sbjct: 428 LKPRIEHYTCVVDLLGRAGRLEEAEGMIRSM 458



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 9/179 (5%)

Query: 16  STLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           S L    +  TL    QIHA +I  G      + + L++ +S S C   +        K 
Sbjct: 300 SVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDS-------IKA 352

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
              RE  D  LW+++I  Y      +EAL +F  M D  +  ++ +   +L ACS  GL 
Sbjct: 353 FVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLK 412

Query: 136 EEGLQIHGLL-RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMI 192
           E+G +   L+ +K      +    C++ L  R G LE A  +   M ++ D + + +++
Sbjct: 413 EKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLL 471


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  311 bits (796), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 175/516 (33%), Positives = 282/516 (54%), Gaps = 43/516 (8%)

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H LL        +F+   L++LY   G +  +R  FD++  +D  ++NSMI  YV +G+
Sbjct: 38  LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 97

Query: 201 IESARELFDSMPIRER---NLISWNSVLNGYAQLKSG---------LQFAWQIF------ 242
              A   F  + +      +  ++  VL     L  G         L F W +F      
Sbjct: 98  FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLI 157

Query: 243 ----------------EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP----KRDVV 282
                           + MP RD+ SWN+M+ G ++ G    A  + D+M     K + V
Sbjct: 158 HMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFV 217

Query: 283 SWANM----IDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM 338
           +  ++    +D YAKLG +D A ++F+ +P +DV++ N ++ GY +NG + +A+E++  M
Sbjct: 218 TVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMM 277

Query: 339 QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS 398
           +    + P+  + V +L A A +G + +G+ IH  + K    L+      LID+Y KCG 
Sbjct: 278 EECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGR 337

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
           + +A+ +F Q+   S   WNA+I+   IHG  E    L  EM    ++PD +TF  LL+A
Sbjct: 338 LVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSA 397

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
           C+H+G V+EG  CF LM+  + ++P L+HYGCMVD+LGRAG++E A + I+DMP++P+  
Sbjct: 398 CSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDAS 456

Query: 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578
           IW  LL ACR + N+ +G+  +  L  +DS N   YVLLSN++A +G W    +VRS+ +
Sbjct: 457 IWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLAR 516

Query: 579 ERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           ER LKK PG S IE+   V  F+  ++S  + ++IY
Sbjct: 517 ERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIY 552



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 224/465 (48%), Gaps = 65/465 (13%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           +HA ++  G +++  ++T+LV  +++     L+   R  F +      +KD + WN++I 
Sbjct: 38  LHALLVVAGKVQSIFISTRLVNLYANLGDVSLS---RCTFDQI----PQKDVYAWNSMIS 90

Query: 93  TYSHGLDPKEAL-VMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
            Y H     EA+   + L+L + +  D ++   VLKAC   G + +G +IH    K+ F 
Sbjct: 91  AYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQ 147

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
            ++F+   LI +Y R G+   AR LFD M  RD  S+N+MI G +++GN   A ++ D M
Sbjct: 148 WNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEM 207

Query: 212 PIR--ERNLISWNSVLNGYAQLKSGLQF---AWQIFEKMPERDLISWNSMLHGCVKCGKM 266
            +   + N ++  S+L  +  + + L     A ++FE +P +D+ISWN+++ G  + G  
Sbjct: 208 RLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLA 267

Query: 267 DDAQALFDKM-------PKR---------------------------------DVVSWAN 286
            +A  ++  M       P +                                 DV     
Sbjct: 268 SEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATC 327

Query: 287 MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP 346
           +ID Y K GR+  A  LF ++P+   V  NA++  +  +G++ K L++F  M  E  + P
Sbjct: 328 LIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDE-GVKP 386

Query: 347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENA---I 403
           D  + V +LSA +  G +++G    R +++     + KH   ++D+  + G +E A   I
Sbjct: 387 DHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFI 446

Query: 404 KVFEQIEDGSVDHWNAMINGLAIHG---LGELAFDLLMEMERLSI 445
           K      D S+  W A++    IHG   LG+ A D L E++  ++
Sbjct: 447 KDMPLQPDASI--WGALLGACRIHGNIELGKFASDRLFEVDSKNV 489


>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
 gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
          Length = 528

 Score =  311 bits (796), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 171/462 (37%), Positives = 263/462 (56%), Gaps = 6/462 (1%)

Query: 164 YVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN-----L 218
           Y   G +  AR+LFD++   D +S+ S++  +++  N   A  LF  +           +
Sbjct: 57  YADFGRVADARKLFDEIPNPDLISFTSLMSLHLQLDNQREAISLFARVVAAGHRPDGFAV 116

Query: 219 ISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK 278
           +   S  +G      G      IF    + +++  N+++    +CGK + A  +FD+M  
Sbjct: 117 VGALSASSGAGDQVVGRAVHGLIFRLGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMSL 176

Query: 279 RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM 338
           +D V+W +M+ GY K   VD A   FD++P R VVA  A++ G+V+    ++ALE+F  M
Sbjct: 177 KDEVTWGSMLHGYIKCAGVDSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELFGRM 236

Query: 339 QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS 398
             E +  P   ++V VLSA A +G +D G  IH Y  K   SLN     AL+DMY+K G 
Sbjct: 237 VLEGH-RPTHVTIVGVLSACADIGALDLGRVIHGYGSKCNASLNIIVSNALMDMYAKSGH 295

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
           IE A  VF++++      W  MI+   + G G+ A +L  +M R  + P+ +TF  +L+A
Sbjct: 296 IEMAFSVFQEVQSKDSFTWTTMISCCTVQGDGKKALELFQDMLRAGVVPNSVTFVSVLSA 355

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
           C+H+GL++EG+  F+ MR+++K++P L+HYGCM+D+LGR G +E A  LI DM +EP+ V
Sbjct: 356 CSHSGLIEEGIELFDRMRQLYKIDPLLEHYGCMIDLLGRGGLLEEAEALIADMNVEPDIV 415

Query: 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578
           IWR+LLSAC    N  + E   K ++  +  +   YVLL NM+A    W +AR +R  M 
Sbjct: 416 IWRSLLSACLVRGNNRLAEIAGKEIVKREPGDDGVYVLLWNMYASSNKWREAREMRQQML 475

Query: 579 ERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
              + K PGCSWIE++G VHEF V DK+    R+IY  L+ M
Sbjct: 476 SLKIFKKPGCSWIEIDGAVHEFLVEDKTHDARREIYETLEYM 517



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 115/452 (25%), Positives = 210/452 (46%), Gaps = 59/452 (13%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LL +CK L ++ +IHA  I  G   +         S S        +F R +      F 
Sbjct: 20  LLAQCKKLRELQRIHALAIAHGLHPHQQ-------SVSCKIFRCYADFGR-VADARKLFD 71

Query: 80  EKKDPFL--WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
           E  +P L  + +++  +    + +EA+ +F  ++  G   D F+    L A S  G    
Sbjct: 72  EIPNPDLISFTSLMSLHLQLDNQREAISLFARVVAAGHRPDGFAVVGALSASSGAGDQVV 131

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G  +HGL+ ++    ++ + N LI +Y +CG  E A ++FD+M ++D V++ SM+ GY+K
Sbjct: 132 GRAVHGLIFRLGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMSLKDEVTWGSMLHGYIK 191

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM------PERDLI 251
              ++SA   FD +P+  R++++W +++ G+ Q +  ++ A ++F +M      P    +
Sbjct: 192 CAGVDSALSFFDQVPV--RSVVAWTALITGHVQGRQPVR-ALELFGRMVLEGHRPTH--V 246

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEM 307
           +   +L  C   G +D  + +     K     +++    ++D YAK G +++A  +F E+
Sbjct: 247 TIVGVLSACADIGALDLGRVIHGYGSKCNASLNIIVSNALMDMYAKSGHIEMAFSVFQEV 306

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
             +D      M+      G   KALE+F +M     + P+  + V VLSA +  G I++ 
Sbjct: 307 QSKDSFTWTTMISCCTVQGDGKKALELFQDM-LRAGVVPNSVTFVSVLSACSHSGLIEE- 364

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
                             G+ L D   +   I           D  ++H+  MI+ L   
Sbjct: 365 ------------------GIELFDRMRQLYKI-----------DPLLEHYGCMIDLLGRG 395

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
           GL E A  L+ +M   ++EPD + +  LL+AC
Sbjct: 396 GLLEEAEALIADM---NVEPDIVIWRSLLSAC 424


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  311 bits (796), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 166/401 (41%), Positives = 245/401 (61%), Gaps = 3/401 (0%)

Query: 220 SWNSVLN---GYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM 276
           ++ SVL    G AQ+  G +    + +   E +L   NS++    K G    AQ LFD+M
Sbjct: 129 TFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEM 188

Query: 277 PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFD 336
             RDVVSW  +I GY   G VD AR +FD M ++++V+ + M+ GY RN     A+E+F 
Sbjct: 189 VVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFR 248

Query: 337 NMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC 396
            MQ E  L P+D +LV VLSA A LG +D G  IHR++ +++  +    G AL DMY+KC
Sbjct: 249 QMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKC 308

Query: 397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLL 456
           G +  A  VF ++ +  V  W+ +I GLA++G    AF+   EM    +EP+DI+F GLL
Sbjct: 309 GCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLL 368

Query: 457 NACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPN 516
            AC HAGLV +GL  F++M +++ + P+++HYGC+VD+L RAG ++ A +LI  MPM+PN
Sbjct: 369 TACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPN 428

Query: 517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSM 576
            ++W  LL  CR Y++   GE V   ++ +DS++S S V L+N++A +G  +DA   R  
Sbjct: 429 VIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLR 488

Query: 577 MKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           M++    K PGCSWIE+   V+EFF+ D S  Q   IY M+
Sbjct: 489 MRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMI 529



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 124/436 (28%), Positives = 223/436 (51%), Gaps = 30/436 (6%)

Query: 15  QSTLLLLRKCKT---LNDVNQIHARMITTGF--IKNTHLTTKLVASFSSSPCTPLTEFAR 69
           + T+ LL +C T   +  + +I A++I +    I    +  K +   SS          R
Sbjct: 22  RKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNL------R 75

Query: 70  YIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFC--LMLDNGVSVDKFSASLVLK 127
           +    ++ F    + F +NA++K +S        +  F   L+L N  + D+++ + VLK
Sbjct: 76  HSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLK 135

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           AC+ L  + EG ++H  + K    S+LF++N L+ LY + G    A++LFD+M +RD VS
Sbjct: 136 ACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVS 195

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
           +N++I GY  SG ++ AR +FD M   E+NL+SW+++++GYA+       A ++F +M  
Sbjct: 196 WNTLISGYCFSGMVDKARMVFDGM--MEKNLVSWSTMISGYAR-NEKYADAIELFRQMQH 252

Query: 248 RDLISWN-----SMLHGCVKCGKMDDAQAL--FDKMPKRDVVSWAN--MIDGYAKLGRVD 298
              ++ N     S+L  C   G +D  + +  F +  K +V  +    + D YAK G V 
Sbjct: 253 EGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVL 312

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
            A+ +F EM +RDV++ + ++ G    GY+ +A   F  M  E  L P+D S + +L+A 
Sbjct: 313 EAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEM-IEDGLEPNDISFMGLLTAC 371

Query: 359 AQLGHIDKGVAIHRYLEKDQFSLNGK--HGVALIDMYSKCGSIENAIKVFEQIE-DGSVD 415
              G +DKG+     + +  + +  K  H   ++D+ S+ G ++ A  +   +    +V 
Sbjct: 372 THAGLVDKGLEYFDMMPQ-VYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVI 430

Query: 416 HWNAMINGLAIHGLGE 431
            W A++ G  I+   E
Sbjct: 431 VWGALLGGCRIYKDAE 446


>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 537

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 176/509 (34%), Positives = 289/509 (56%), Gaps = 31/509 (6%)

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           I+  L + G L    F +   +  C +S     G +  A  LF  +  R S  +N+M+  
Sbjct: 32  IQSHLTVSGTLFD-PFAAGRIISFCAVSAQ---GDISHAYLLFLSLPRRTSFIWNTMLRA 87

Query: 195 YVKSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQLK----------SGLQFAWQIF 242
           +       +   L+  M       N  +++ +L   AQL             ++  W+ +
Sbjct: 88  FTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAY 147

Query: 243 EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
           + +        N +LH    C  MD A+ LFD    RDVV+W  +I+GYAK G+V +AR+
Sbjct: 148 DFVQ-------NGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQ 200

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           LFDEMP+++ V+ +AM+ GY + G   +ALE+F++MQ   +  P+  ++V  L+A A LG
Sbjct: 201 LFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGF-RPNHGAIVGALTACAFLG 259

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
            +D+G  IH Y+++++  L+   G ALIDMY+KCG +E A +VF+++ D  V  + ++I+
Sbjct: 260 ALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLIS 319

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
           GLA HG    A ++   M+   + P+++TF  LL+AC+  GLV+EGL  F+ M  I+ +E
Sbjct: 320 GLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIE 379

Query: 483 PELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKH 542
           P +QHYGC+VD+LGRAG +E A+ ++ +MP+EP+  +   LL+ACR + ++ +G+   + 
Sbjct: 380 PVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVEC 439

Query: 543 LIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
           L      +   +VLLSNM+A    W D  +VR  M+E+ +KK+PGCS IE++G V EF  
Sbjct: 440 LAERSLDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVFEFVA 499

Query: 603 RDKSRLQVRDIYYM-------LDNMWTPD 624
            D S + + +I  +       L ++W+ D
Sbjct: 500 GDMSHVFMDEIVLLLLGIDKHLKSLWSED 528


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 199/680 (29%), Positives = 339/680 (49%), Gaps = 84/680 (12%)

Query: 20  LLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASF--SSSPCTPLTEFARYIFFK 74
           LL+ C+T  +      IHAR +  G + + +L   L++ +  ++     L + AR +F +
Sbjct: 32  LLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRD-ARRLFDE 90

Query: 75  YHAFREKKDPFLWNAIIKTYSH---------------------------GLDPK----EA 103
               R  ++ F WN+++  ++                            GL+      EA
Sbjct: 91  IPLAR--RNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEA 148

Query: 104 LVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISL 163
           +     M  +G +  +F+ + VL +C+       G ++H  + K+  GS + + N ++++
Sbjct: 149 IKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNM 208

Query: 164 YVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNS 223
           Y +CG  E A  +F++M +R   S+N+M+      G ++ A  LF+SMP  +R+++SWN+
Sbjct: 209 YGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMP--DRSIVSWNA 266

Query: 224 VLNGYAQ----LKSGLQFAWQIFEKMPERDLISWNSMLHGCV------------------ 261
           ++ GY Q     K+   F+  + E     D  +  S+L  C                   
Sbjct: 267 MIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRT 326

Query: 262 -----------------KCGKMDDAQALFDKMPKRD--VVSWANMIDGYAKLGRVDIARR 302
                            K G +++A+ + D+  + D  V+S+  +++GY K+G ++ AR 
Sbjct: 327 EMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESARE 386

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           +F  M  RDVVA  AM+ GY +NG + +A+++F +M       P+  +L  VLS  A L 
Sbjct: 387 MFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSM-ITCGPEPNSYTLAAVLSVCASLA 445

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI-EDGSVDHWNAMI 421
            +D G  IH    +     +     A+I MY++ GS   A ++F+Q+        W +MI
Sbjct: 446 CLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMI 505

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
             LA HG GE A  L  EM R  +EPD IT+ G+L+AC+HAG V EG   ++ ++  H++
Sbjct: 506 VALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQI 565

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
            PE+ HY CMVD+L RAG    A+  I  MP+EP+ + W +LLSACR ++N  + E  A+
Sbjct: 566 APEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAE 625

Query: 542 HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
            L+ +D +NS +Y  ++N+++  G W+DA R+    KE+ ++K  G SW  +   +H F 
Sbjct: 626 KLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFG 685

Query: 602 VRDKSRLQVRDIYYMLDNMW 621
             D    Q   +Y M   MW
Sbjct: 686 ADDVVHPQRDAVYAMAARMW 705


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 184/614 (29%), Positives = 318/614 (51%), Gaps = 77/614 (12%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLM-LDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           ++D   W  II  Y +G++  EAL +F  M ++ G+ +D F  SL LKAC     +  G 
Sbjct: 29  QRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILSLALKACGLNMSVSFGE 88

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
            +HG   K  F + +F+ + L+ +Y++ G ++    +F +M +R+ VS+ ++I G V++G
Sbjct: 89  SLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVRAG 148

Query: 200 NIESARELFDSMPIRER--NLISWNSVLNGYA--------------QLKSG--------- 234
             + A   F  M I++   +  +++S L   A               LK G         
Sbjct: 149 YNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVAN 208

Query: 235 -----------LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV-- 281
                      L +  ++FE M +RD++SW +++   V+ G+ ++A   F +M + DV  
Sbjct: 209 TLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSP 268

Query: 282 --VSWANMIDGYAKLGRV-----------------------------------DIARRLF 304
              ++A +I G A LGR+                                   D+A  +F
Sbjct: 269 NEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVF 328

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
             + +RD+++ + M+ GY + G   +A +    M+ E    P++ +   VLS    +  +
Sbjct: 329 QGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRRE-GPRPNEFAFASVLSVCGNMAIL 387

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
           ++G  +H ++       N     ALI+MYSKCGSI+ A K+F++ E  ++  W AMING 
Sbjct: 388 EQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGY 447

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
           A HG  + A DL  ++ ++ + PD +TF  +L AC+HAGLV  G   F  + ++H++ P 
Sbjct: 448 AEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPS 507

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
             HYGCM+D+L RAG +  A ++I+ MP + +DV+W TLL ACR + +++ G+  A+ ++
Sbjct: 508 KDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACRIHGDVDCGKRAAEKIL 567

Query: 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
            +D + + +++ L+NM+A  G W +A  VR MMK + + K PG SWI+ +  V  F   D
Sbjct: 568 QLDPNCAVTHITLANMYAAKGKWKEAAEVRKMMKSKGVVKEPGWSWIKFKDRVSAFVSGD 627

Query: 605 KSRLQVRDIYYMLD 618
           +S  +   IY +LD
Sbjct: 628 RSHPEGEYIYDVLD 641



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 115/489 (23%), Positives = 211/489 (43%), Gaps = 112/489 (22%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN 217
           N ++   V+ G+L  ARQLFDKM  RD +S+ ++I GYV   N   A  LF  M + E  
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWV-EPG 63

Query: 218 L-------------------ISWNSVLNGYA------------------QLKSG-LQFAW 239
           L                   +S+   L+GY+                   +K G +    
Sbjct: 64  LHMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGC 123

Query: 240 QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLG 295
            +F++MP R+++SW +++ G V+ G   +A A F  M  +    D  ++++ +   A  G
Sbjct: 124 IVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSG 183

Query: 296 RVDIAR-----------------------------------RLFDEMPKRDVVACNAMMG 320
            ++  R                                   RLF+ M +RDVV+   ++ 
Sbjct: 184 ALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIM 243

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
             V+ G    A++ F  M+ E  + P++ +   V+S  A LG I+ G  +H ++ +    
Sbjct: 244 SNVQIGQEENAVKAFRRMR-ETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLV 302

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
            +     +++ MYSKC  ++ A  VF+ +    +  W+ MI+G A  G GE AFD L  M
Sbjct: 303 DSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWM 362

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEG------LLCFEL-------------------M 475
            R    P++  F  +L+ C +  ++++G      +LC  L                   +
Sbjct: 363 RREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSI 422

Query: 476 RRIHKLEPELQH-----YGCMVDILGRAGHIEAARNLIEDMP---MEPNDVIWRTLLSAC 527
           +   K+  E ++     +  M++     G+ + A +L + +P   + P+ V +  +L+AC
Sbjct: 423 KEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAAC 482

Query: 528 RNYENLNVG 536
            +   +++G
Sbjct: 483 SHAGLVDLG 491



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 124/286 (43%), Gaps = 35/286 (12%)

Query: 293 KLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLV 352
           K G ++ AR+LFD+M +RD ++   ++ GYV    + +AL +F  M  E  LH D   L 
Sbjct: 13  KTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILS 72

Query: 353 IVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG 412
           + L A      +  G ++H Y  K  F  +   G AL+DMY K G ++    VF+++   
Sbjct: 73  LALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLR 132

Query: 413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG--LL 470
           +V  W A+I GL   G  + A     +M    +  D  TF+  L ACA +G +  G  + 
Sbjct: 133 NVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIH 192

Query: 471 CFELMR-----------------RIHKLEPELQHYGCM---------------VDILGRA 498
           C  L +                 +  KL+  L+ +  M               V I    
Sbjct: 193 CQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEE 252

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
             ++A R + E   + PN+  +  ++S C     +  GE +  H+I
Sbjct: 253 NAVKAFRRMRE-TDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVI 297



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 13/183 (7%)

Query: 27  LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFL 86
           L    Q+HA ++  G  +NT + + L+  +  S C  + E A  IF +     E  +   
Sbjct: 387 LEQGKQLHAHVLCVGLEQNTMVQSALINMY--SKCGSIKE-ASKIFDE----AEYNNIVS 439

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           W A+I  Y+     +EA+ +F  +   G+  D  +   VL ACS  GL++ G      L 
Sbjct: 440 WTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLS 499

Query: 147 KV---AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI-RDSVSYNSMIDGYVKSGNIE 202
           KV       D +   C+I L  R G L  A  +   M   RD V +++++      G+++
Sbjct: 500 KVHQICPSKDHY--GCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACRIHGDVD 557

Query: 203 SAR 205
             +
Sbjct: 558 CGK 560


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 192/613 (31%), Positives = 331/613 (53%), Gaps = 54/613 (8%)

Query: 20  LLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           LL++C  L  + Q   +HA ++ +G   N +L   L++ ++   C  LT+ AR +F    
Sbjct: 53  LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAK--CGSLTD-ARRVF---D 106

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
           + R++ +   W A+I+ +  G    EA   +  M   G   DK +   +L A +   L++
Sbjct: 107 SIRDR-NIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQ 165

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G ++H  +                        +E   +L  ++G        S++  Y 
Sbjct: 166 LGQKVHMEI------------------------VEAGLELEPRVG-------TSLVGMYA 194

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----IS 252
           K G+I  AR +FD +P  E+N+++W  ++ GYAQ +  +  A ++ E M + ++    I+
Sbjct: 195 KCGDISKARVIFDRLP--EKNVVTWTLLIAGYAQ-QGQVDVALELLETMQQAEVAPNKIT 251

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           + S+L GC     ++  + +   + +    R++    ++I  Y K G ++ AR+LF ++P
Sbjct: 252 FASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLP 311

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            RDVV   AM+ GY + G+  +A+ +F  MQ +  + PD  +   VL++ +    + +G 
Sbjct: 312 HRDVVTWTAMVTGYAQLGFHDEAINLFRRMQ-QQGIKPDKMTFTSVLTSCSSPAFLQEGK 370

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL-AIH 427
            IH+ L    ++L+     AL+ MY+KCGS+++A  VF Q+ + +V  W A+I G  A H
Sbjct: 371 RIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQH 430

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           G    A +   +M++  I+PD +TFT +L+AC H GLV+EG   F  M   + ++P ++H
Sbjct: 431 GRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEH 490

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
           Y C VD+LGRAGH+E A N+I  MP  P   +W  LLSACR + ++  GE  A++++ +D
Sbjct: 491 YSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLD 550

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
             +  +YV LS+++A  G + DA +VR +M++R++ K PG SWIE++G VH F V DKS 
Sbjct: 551 PDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSH 610

Query: 608 LQVRDIYYMLDNM 620
            +   IY  L  +
Sbjct: 611 PESEQIYVELGKL 623


>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
          Length = 496

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 175/428 (40%), Positives = 249/428 (58%), Gaps = 36/428 (8%)

Query: 124 LVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183
            V+KAC+   +   GL +H  + K  F  D ++ + LI LY     L  A+QLF+    R
Sbjct: 5   FVIKACNESSVTWFGLLVHTHV-KSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSDR 63

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFE 243
           D VS+N+MIDGYVK G +  AR +FD M  R+  +ISWN+++NGYA +   +  A ++F+
Sbjct: 64  DLVSWNAMIDGYVKRGEMGHARMVFDRMVCRD--VISWNTMINGYA-IVGKIDEAKRLFD 120

Query: 244 KMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRL 303
           +MPER+L+S NSML G VKCG ++DA  LF +MP RDVVSW +M+  YA+ G+ + A  L
Sbjct: 121 EMPERNLVSXNSMLXGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALAL 180

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           FD+M    V                                 P +A++V +LSA A LG 
Sbjct: 181 FDQMXAVGV--------------------------------KPSEATVVSLLSACAHLGA 208

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           +DKG+ +H Y+  ++  +N   G AL+DMY+KCG I  A +VF  +E   V  WN +I G
Sbjct: 209 LDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAG 268

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
           +AI G  + A  L  EM+   +EP+DITF  +L+AC+HAG+V EG    + M   + +EP
Sbjct: 269 MAILGHVKEAQQLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEP 328

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
           +++HYGC++D+L RAG +E A  LI  MPMEPN      LL  CR + N  +GE V K L
Sbjct: 329 KVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFELGEMVGKRL 388

Query: 544 IGMDSSNS 551
           I +    S
Sbjct: 389 INLQPCQS 396



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 40/248 (16%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D   WN+++  Y+    P EAL +F  M   GV   + +   +L AC+ LG +++GL +
Sbjct: 156 RDVVSWNSMLACYAQCGKPNEALALFDQMXAVGVKPSEATVVSLLSACAHLGALDKGLHL 215

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H  +       +  +   L+ +Y +CG +  A Q+F+ M  +D +++N++I G    G++
Sbjct: 216 HTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHV 275

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
           + A++LF  M                               E   E + I++ +ML  C 
Sbjct: 276 KEAQQLFKEMK------------------------------EAGVEPNDITFVAMLSACS 305

Query: 262 KCGKMDDAQALFDKM-------PKRDVVSWANMIDGYAKLGRVDIARRLFDEMP-KRDVV 313
             G +D+ Q L D M       PK  V  +  +ID  A+ G ++ A  L   MP + +  
Sbjct: 306 HAGMVDEGQKLLDCMSSSYGIEPK--VEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPC 363

Query: 314 ACNAMMGG 321
           A  A++GG
Sbjct: 364 ALGALLGG 371


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 189/534 (35%), Positives = 293/534 (54%), Gaps = 40/534 (7%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +L+AC +   + E  +IH    K    +D  + + L  LY+ C  +  AR+LFD++    
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSM---PIRERNLISWNSVL---NGYAQLKSGLQF- 237
            + +N +I  Y  +G  + A +L+ SM    +R  N  ++  VL   +G   ++ G++  
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRP-NKYTYPFVLKACSGLLAIEDGVEIH 132

Query: 238 ------------------------------AWQIFEKMPERDLISWNSMLHGCVKCGKMD 267
                                         A ++F  M  RD+++WN+M+ GC   G  D
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCD 192

Query: 268 DAQALFDKMPKRDVVSWANMIDGYAKLGRVDI-ARRLFDEMPKRDVVACNAMMGGYVRNG 326
           DA  L  +M +  +   ++ I G     +  + AR++FD M  R+ V+ +AM+GGYV + 
Sbjct: 193 DAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASD 252

Query: 327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG 386
              +AL+IF  MQ    + PD  +++ VL A + L  +  G   H YL    F+ +    
Sbjct: 253 CMKEALDIFRMMQLS-GIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLIC 311

Query: 387 VALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE 446
            ALIDMYSKCG I  A +VF +++   +  WNAMI G  IHGLG  A  L  ++  L ++
Sbjct: 312 NALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLK 371

Query: 447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARN 506
           PDDITF  LL++C+H+GLV EG L F+ M R   + P ++H  CMVDILGRAG I+ A +
Sbjct: 372 PDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHH 431

Query: 507 LIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGM 566
            I +MP EP+  IW  LLSACR ++N+ +GE V+K +  +   ++ ++VLLSN+++  G 
Sbjct: 432 FIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGR 491

Query: 567 WNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           W+DA  +R   K+  LKK+PGCSWIE+ G+VH F   D+S LQ+  I   L+ +
Sbjct: 492 WDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEEL 545



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 137/496 (27%), Positives = 228/496 (45%), Gaps = 67/496 (13%)

Query: 18  LLLLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF---ARYI 71
           L LL  C   K+L +  +IH       F+KNT       ++  SS    LT        +
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQH-----FLKNT-------SNADSSVLHKLTRLYLSCNQV 59

Query: 72  FFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKAC 129
                 F E  +P   LWN II+ Y+       A+ ++  ML  GV  +K++   VLKAC
Sbjct: 60  VLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKAC 119

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
           S L  IE+G++IH   +     SD+F+   L+  Y +CG L  A++LF  M  RD V++N
Sbjct: 120 SGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWN 179

Query: 190 SMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERD 249
           +MI G    G  + A +L   M ++E  +   +S + G       L +A +IF+ M  R+
Sbjct: 180 AMIAGCSLYGLCDDAVQLI--MQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRN 237

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMP-------------------------------- 277
            +SW++M+ G V    M +A  +F  M                                 
Sbjct: 238 EVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHG 297

Query: 278 -------KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMK 330
                    D +    +ID Y+K G++  AR +F+ M + D+V+ NAM+ GY  +G  M+
Sbjct: 298 YLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGME 357

Query: 331 ALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK--HGVA 388
           AL +F ++   L L PDD + + +LS+ +  G + +G      + +D FS+  +  H + 
Sbjct: 358 ALGLFHDLL-ALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRD-FSIVPRMEHCIC 415

Query: 389 LIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP 447
           ++D+  + G I+ A      +  +  V  W+A+++   IH   EL  ++  +++ L  E 
Sbjct: 416 MVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPES 475

Query: 448 DDITFTGLLNACAHAG 463
               F  L N  + AG
Sbjct: 476 TG-NFVLLSNIYSAAG 490


>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
          Length = 512

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 176/509 (34%), Positives = 289/509 (56%), Gaps = 31/509 (6%)

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           I+  L + G L    F +   +  C +S     G +  A  LF  +  R S  +N+M+  
Sbjct: 7   IQSHLTVSGTLFD-PFAAGRIISFCAVSAQ---GDISHAYLLFLSLPRRTSFIWNTMLRA 62

Query: 195 YVKSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQLK----------SGLQFAWQIF 242
           +       +   L+  M       N  +++ +L   AQL             ++  W+ +
Sbjct: 63  FTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAY 122

Query: 243 EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
           + +        N +LH    C  MD A+ LFD    RDVV+W  +I+GYAK G+V +AR+
Sbjct: 123 DFVQ-------NGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQ 175

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           LFDEMP+++ V+ +AM+ GY + G   +ALE+F++MQ   +  P+  ++V  L+A A LG
Sbjct: 176 LFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGF-RPNHGAIVGALTACAFLG 234

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
            +D+G  IH Y+++++  L+   G ALIDMY+KCG +E A +VF+++ D  V  + ++I+
Sbjct: 235 ALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLIS 294

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
           GLA HG    A ++   M+   + P+++TF  LL+AC+  GLV+EGL  F+ M  I+ +E
Sbjct: 295 GLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIE 354

Query: 483 PELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKH 542
           P +QHYGC+VD+LGRAG +E A+ ++ +MP+EP+  +   LL+ACR + ++ +G+   + 
Sbjct: 355 PVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVEC 414

Query: 543 LIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
           L      +   +VLLSNM+A    W D  +VR  M+E+ +KK+PGCS IE++G V EF  
Sbjct: 415 LAERSLDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVFEFVA 474

Query: 603 RDKSRLQVRDIYYM-------LDNMWTPD 624
            D S + + +I  +       L ++W+ D
Sbjct: 475 GDMSHVFMDEIVLLLLGIDKHLKSLWSED 503


>gi|242083462|ref|XP_002442156.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
 gi|241942849|gb|EES15994.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
          Length = 557

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 192/608 (31%), Positives = 299/608 (49%), Gaps = 79/608 (12%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           L R+  +     Q+ A+++  G          L+AS S SP       AR +F       
Sbjct: 19  LARRATSPAAARQLQAQLLVRGLPLPARAAVALIAS-SHSP-----RHARAVF-DSAVPA 71

Query: 80  EKKDPFLWNAIIKTY----SHGLDPKE-ALVMFCLMLDNGVS-VDKFSASLVLKACSRLG 133
             ++ +LW A I  Y    S  L   E AL +F LML  GV   + F+AS V++ CS L 
Sbjct: 72  ASENVYLWTATIAAYARHASSSLSAAEGALALFRLMLRRGVPRPNAFTASSVVRCCSALR 131

Query: 134 LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMID 193
            + EG+Q+HG L     G                               R S    +++D
Sbjct: 132 AVREGIQVHGFLFSAGLG-------------------------------RASHVGAALVD 160

Query: 194 GYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISW 253
            Y   G +  AR +FD                                  +MP  +++  
Sbjct: 161 MYGSLGRVADARRVFD----------------------------------EMPSTNVVLG 186

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
           N+M+   V+ G ++  + +FD+M +RD +SW  ++ GY + G   +AR LF+EMP R+V 
Sbjct: 187 NTMVACYVRAGDVEAGRDVFDRMAERDPISWNTLMMGYLRQGEAGVARDLFEEMPDRNVN 246

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
           + N ++    + G    A+E+F+ M+   +  PD A++ +++SA AQLG +     +H  
Sbjct: 247 SWNMVIAACSQEGLWADAVEVFNRMRLARF-QPDPATMAVLMSACAQLGSLSIASQVHGI 305

Query: 374 LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
           L K    +N     +LIDMY+KCGS+  A  +F +        +N MI  LA HG G  A
Sbjct: 306 LRKGCVEMNFHVLNSLIDMYAKCGSVSQAHLLFVETRLKDTVSYNVMICALAQHGHGRDA 365

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493
             +  EM    ++PD +TF G+L+ACAHAGLV +G   FE MR  + +E    HY CMVD
Sbjct: 366 LQIFDEMSEEGLQPDAVTFLGVLSACAHAGLVHDGKFYFESMRTNYAIEQSPDHYACMVD 425

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS 553
           + GRAG IE A  L   MP++P+  +W  L++ACR + N+ VG+  A+ LI ++  N  +
Sbjct: 426 LYGRAGLIEEAYQLARAMPVKPHAGVWGALINACRKHCNVEVGKVAARELIAIEPGNPGT 485

Query: 554 YVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
           YVLL+N  A    W+    V   M+ + ++K  GCSW+E++ VVHEF + + S     +I
Sbjct: 486 YVLLANTLARGQQWDFVETVWQSMRGKGIEKTAGCSWLEVDRVVHEFLMGESSHPNSDEI 545

Query: 614 YYMLDNMW 621
           Y +L++++
Sbjct: 546 YCILEHLY 553


>gi|116309337|emb|CAH66421.1| H0622F05.4 [Oryza sativa Indica Group]
 gi|116309402|emb|CAH66479.1| OSIGBa0137L20.8 [Oryza sativa Indica Group]
          Length = 545

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 179/573 (31%), Positives = 297/573 (51%), Gaps = 45/573 (7%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LL +C+T   + Q+HAR++  G   +  L  +  A+  +  C  +      +        
Sbjct: 15  LLGRCRTARCLAQLHARIVRLGLHNHHALLARFAAACDTLSCPSVVASLLSVAVPVR--- 71

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
                 L NA++ + +     ++AL  F L+       D FS   +L AC+R   +  G 
Sbjct: 72  ------LRNAVLASLARHAPLRDALAQFNLLRGGASRPDAFSFPPLLCACARASSLPTGA 125

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
            +H    ++   +DLF++  LI  Y RCG    AR LFD +     VS+ +++  YV SG
Sbjct: 126 SLHAAAIRLGVDADLFVRTALIQFYGRCGAAAAARALFDSLTNPSEVSWTAIVTAYVNSG 185

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
           +I +ARE                                  +F+++P R+++ WN+M+ G
Sbjct: 186 DILTARE----------------------------------LFDQIPHRNVVHWNAMVDG 211

Query: 260 CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM 319
            VKCG ++ A+ LFD+MP+R   ++ ++I GY   G +  AR LFD++  RD+ A + M+
Sbjct: 212 YVKCGDLEGARKLFDEMPERTPAAYTSLIGGYLNAGNMGAARTLFDKLEDRDLFAWSTMI 271

Query: 320 GGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF 379
            G  +NGY  +AL IF+  Q +  + PD+  +V ++SA +QLG+I     I  Y+     
Sbjct: 272 SGCAQNGYPGEALRIFNEFQ-KQEICPDELVIVGLMSACSQLGNITLARWIEGYIMIYPI 330

Query: 380 SLNGKHGVA-LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
            +N  H +A LI+M +KCG++E A  +FE +    V  + +M+ G  +HG    A +L  
Sbjct: 331 DMNNVHVMAGLINMNAKCGNMERATLLFESMSVRDVFSYCSMMQGHCLHGSASKAVELFS 390

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
           +M    I PD+  FT +L AC+HAGLV+EG   F++M+  + + P   HY C+V +LGR 
Sbjct: 391 QMLLEGITPDNAAFTVVLTACSHAGLVEEGKRYFDMMKNEYMIVPSGDHYACLVSLLGRF 450

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           G +  A  LI+ MP EP+   W  LL  C+ + ++ +G+  AK L  ++  N+ +YV LS
Sbjct: 451 GMLRDAYELIKSMPGEPHPGAWGALLGGCKFHCDIELGKIAAKKLFEIEPENAGNYVSLS 510

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           N++A +  W +    R+ M  R + K+ GC+ +
Sbjct: 511 NIYANIDRWGNVSETRAEMTGRGITKIAGCTLV 543


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 199/619 (32%), Positives = 321/619 (51%), Gaps = 60/619 (9%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNT-HLTTKLVASFSSSPCTPLTEF--ARYIF---- 72
           LL+ C +L  +  IH+ + T GF+ +T H   +L+  +S      L +   AR +F    
Sbjct: 31  LLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSK-----LGDLHSARTLFDHRH 85

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKAC-SR 131
             +H   +  + FL N +++ Y++     EA+ ++  M   GV V+ F+   VLK C S 
Sbjct: 86  HHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASE 145

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
           LG +  G  +HG + +  FGSDLF++  L+ +Y +C                        
Sbjct: 146 LGAVF-GEVVHGQVVRTGFGSDLFVEAALVDMYAKC------------------------ 180

Query: 192 IDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI 251
                  G I  A E+FD M IR+  ++ W +++  Y Q +  L+ A  +F KM E   +
Sbjct: 181 -------GEIGDAHEVFDRMLIRD--VVCWTAMITLYEQAERPLK-ALMLFRKMQEEGFL 230

Query: 252 SWN-SMLHGCVKCGKMDDAQALFDKMPKRDV------VSWANMIDG-YAKLGRVDIARRL 303
               + +      G++ D +          +      VS  N I G YAK G V+ AR +
Sbjct: 231 GDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLV 290

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           FD M +R+ ++ N+M+ GY +NG    AL +F+ MQ      P+  + +I++SA + LG 
Sbjct: 291 FDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQAS-ECDPNPVTALIMVSACSYLGS 349

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS--VDHWNAMI 421
              G  +H ++   +  ++     A++DMY KCG ++ A+++F   E G   V  WN +I
Sbjct: 350 KHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLI 409

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
           +G  +HG G+ A +L   M+   +EP+DITFT +L+AC+HAGL+ EG  CF  M ++  +
Sbjct: 410 SGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKL-SV 468

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
            PE++HY CMVD+LGRAG +  A  LI+ +P  P+D +W  LL ACR + N  +GE  A 
Sbjct: 469 RPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAAN 528

Query: 542 HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
           +L  ++  ++  YVL+SN++A    W +   VR  MK R LKK    S IE    VH F 
Sbjct: 529 NLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFH 588

Query: 602 VRDKSRLQVRDIYYMLDNM 620
             D+S    R++Y  ++++
Sbjct: 589 TADQSSPYYREVYRKVESL 607


>gi|356532382|ref|XP_003534752.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09410-like [Glycine max]
          Length = 669

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 184/578 (31%), Positives = 315/578 (54%), Gaps = 53/578 (9%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   +N++I  Y    D  EA  +F  M    V  +    S ++   +++G +++  +
Sbjct: 93  QRDDVSYNSMIAVYLKNKDLLEAETVFKEMPQRNVVAE----SAMIDGYAKVGRLDDARK 148

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +   + +     + F    LIS Y  CG +E A  LFD+M  R+ VS+  ++ G+ ++G 
Sbjct: 149 VFDNMTQ----RNAFSWTSLISGYFSCGKIEEALHLFDQMPERNVVSWTMVVLGFARNGL 204

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHG 259
           ++ A   F  MP  E+N+I+W +++  Y  L +G    A+++F +MPER++ SWN M+ G
Sbjct: 205 MDHAGRFFYLMP--EKNIIAWTAMVKAY--LDNGCFSEAYKLFLEMPERNVRSWNIMISG 260

Query: 260 CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAK-------------------------- 293
           C++  ++D+A  LF+ MP R+ VSW  M+ G A+                          
Sbjct: 261 CLRANRVDEAIGLFESMPDRNHVSWTAMVSGLAQNKMIGIARKYFDLMPYKDMAAWTAMI 320

Query: 294 -----LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD 348
                 G +D AR+LFD++P+++V + N M+ GY RN Y  +AL +F  M    +  P++
Sbjct: 321 TACVDEGLMDEARKLFDQIPEKNVGSWNTMIDGYARNSYVGEALNLFVLMLRSCF-RPNE 379

Query: 349 ASLVIVLSAIAQLGHIDKGVA--IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVF 406
            ++  V+++   +  + +  A  IH   E + +  N     ALI +YSK G + +A  VF
Sbjct: 380 TTMTSVVTSCDGMVELMQAHAMVIHLGFEHNTWLTN-----ALITLYSKSGDLCSARLVF 434

Query: 407 EQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVK 466
           EQ++   V  W AMI   + HG G  A  +   M    I+PD++TF GLL+AC+H GLV 
Sbjct: 435 EQLKSKDVVSWTAMIVAYSNHGHGHHALQVFARMLVSGIKPDEVTFVGLLSACSHVGLVH 494

Query: 467 EGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND-VIWRTLLS 525
           +G   F+ ++  + L P+ +HY C+VDILGRAG ++ A +++  +P    D  +   LL 
Sbjct: 495 QGRRLFDSIKGTYNLTPKAEHYSCLVDILGRAGLVDEAMDVVATIPPSARDEAVLVALLG 554

Query: 526 ACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKL 585
           ACR + ++ +   + + L+ ++ S+S  YVLL+N +A  G W++  +VR  M+ERN+K++
Sbjct: 555 ACRLHGDVAIANSIGEKLLELEPSSSGGYVLLANTYAAEGQWDEFAKVRKRMRERNVKRI 614

Query: 586 PGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTP 623
           PG S I++ G  H F V ++S  Q+ +IY +L     P
Sbjct: 615 PGYSQIQITGKNHVFVVGERSHPQIEEIYRLLQQNLQP 652



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 134/495 (27%), Positives = 249/495 (50%), Gaps = 63/495 (12%)

Query: 121 SASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
           +A+LVL + S   L+ + L     L+  +    L  +N  I++  R G L+ AR+LFD+M
Sbjct: 36  NANLVLISNSGTPLMPKNLS----LKPRSSDDALHKRNVEITILGRHGKLDEARKLFDEM 91

Query: 181 GIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQ 240
             RD VSYNSMI  Y+K+ ++  A  +F  MP  +RN+++ +++++GYA++   L  A +
Sbjct: 92  PQRDDVSYNSMIAVYLKNKDLLEAETVFKEMP--QRNVVAESAMIDGYAKVGR-LDDARK 148

Query: 241 IFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIA 300
           +F+ M +R+  SW S++ G   CGK+++A  LFD+MP+R+VVSW  ++ G+A+ G +D A
Sbjct: 149 VFDNMTQRNAFSWTSLISGYFSCGKIEEALHLFDQMPERNVVSWTMVVLGFARNGLMDHA 208

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
            R F  MP+++++A  AM+  Y+ NG   +A ++F  M        +  S  I++S   +
Sbjct: 209 GRFFYLMPEKNIIAWTAMVKAYLDNGCFSEAYKLFLEMP-----ERNVRSWNIMISGCLR 263

Query: 361 LGHIDKGVAIHRYL-EKDQFSLNG-----------------------KHGVALIDMYSKC 396
              +D+ + +   + +++  S                          K   A   M + C
Sbjct: 264 ANRVDEAIGLFESMPDRNHVSWTAMVSGLAQNKMIGIARKYFDLMPYKDMAAWTAMITAC 323

Query: 397 ---GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
              G ++ A K+F+QI + +V  WN MI+G A +     A +L + M R    P++ T T
Sbjct: 324 VDEGLMDEARKLFDQIPEKNVGSWNTMIDGYARNSYVGEALNLFVLMLRSCFRPNETTMT 383

Query: 454 GLLNAC--------AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR 505
            ++ +C        AHA ++  G             E        ++ +  ++G + +AR
Sbjct: 384 SVVTSCDGMVELMQAHAMVIHLG------------FEHNTWLTNALITLYSKSGDLCSAR 431

Query: 506 NLIEDMPMEPNDVI-WRTLLSACRNYENLNVGEPV-AKHLIGMDSSNSSSYVLLSNMFAG 563
            + E   ++  DV+ W  ++ A  N+ + +    V A+ L+     +  ++V L +  + 
Sbjct: 432 LVFEQ--LKSKDVVSWTAMIVAYSNHGHGHHALQVFARMLVSGIKPDEVTFVGLLSACSH 489

Query: 564 LGMWNDARRVRSMMK 578
           +G+ +  RR+   +K
Sbjct: 490 VGLVHQGRRLFDSIK 504



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 14/168 (8%)

Query: 9   QPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP--CTPLTE 66
           +P  +T ++++    C  + ++ Q HA +I  GF  NT LT  L+  +S S   C+    
Sbjct: 376 RPNETTMTSVVT--SCDGMVELMQAHAMVIHLGFEHNTWLTNALITLYSKSGDLCS---- 429

Query: 67  FARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVL 126
            AR +F +     + KD   W A+I  YS+      AL +F  ML +G+  D+ +   +L
Sbjct: 430 -ARLVFEQL----KSKDVVSWTAMIVAYSNHGHGHHALQVFARMLVSGIKPDEVTFVGLL 484

Query: 127 KACSRLGLIEEGLQIHGLLRKV-AFGSDLFLQNCLISLYVRCGYLEFA 173
            ACS +GL+ +G ++   ++            +CL+ +  R G ++ A
Sbjct: 485 SACSHVGLVHQGRRLFDSIKGTYNLTPKAEHYSCLVDILGRAGLVDEA 532



 Score = 42.4 bits (98), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 20/142 (14%)

Query: 463 GLVKEGLLCF------ELMRRIHKLEPE-----LQHYGCMVDILGRAGHIEAARNLIEDM 511
           GLVK   L         LM +   L+P      L      + ILGR G ++ AR L ++M
Sbjct: 32  GLVKNANLVLISNSGTPLMPKNLSLKPRSSDDALHKRNVEITILGRHGKLDEARKLFDEM 91

Query: 512 PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDAR 571
           P + +DV + ++++     ++L   E V K    M   N  +   + + +A +G  +DAR
Sbjct: 92  P-QRDDVSYNSMIAVYLKNKDLLEAETVFKE---MPQRNVVAESAMIDGYAKVGRLDDAR 147

Query: 572 RVRSMMKERNLKKLPGCSWIEL 593
           +V   M +RN       SW  L
Sbjct: 148 KVFDNMTQRN-----AFSWTSL 164


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 205/697 (29%), Positives = 352/697 (50%), Gaps = 92/697 (13%)

Query: 1   MFVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP 60
           + VS  ++    +  S L L    K+L D  ++   +   GF+ +++L +KL   +++  
Sbjct: 84  LHVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTN-- 141

Query: 61  CTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKF 120
           C  L E +R     +   + +K  F WN ++   +   D   ++ +F  M+ +GV +D +
Sbjct: 142 CGDLKEASRV----FDQVKIEKALF-WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSY 196

Query: 121 SASLVLKACSRLGLIEEGLQIHGLLRKVAFGS---------------------------- 152
           + S V K+ S L  +  G Q+HG + K  FG                             
Sbjct: 197 TFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEM 256

Query: 153 ---DLFLQNCLISLYVRCGYLE-----FARQLFDKMGI---------------------- 182
              D+   N +I+ YV  G  E     F + LF  + I                      
Sbjct: 257 TERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGR 316

Query: 183 ------------RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ 230
                       R+    N+++D Y K G+++SA+ +F  M    R+++S+ S++ GYA 
Sbjct: 317 AVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMS--GRSVVSYTSMIAGYA- 373

Query: 231 LKSGLQF-AWQIFEKMPER----DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV---- 281
            + GL   A ++FE+M E     D+ +  ++L+ C +   +D+ + + + + + D+    
Sbjct: 374 -REGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDI 432

Query: 282 -VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQC 340
            VS A ++D YAK G +  A  +F EM  +D+++ N ++GGY +N Y+ +AL +F+ +  
Sbjct: 433 FVSNA-LMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLV 491

Query: 341 ELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE 400
           E    PD+ ++  VL A A L   DKG  IH Y+ ++ +  +     +L+DMY+KCG++ 
Sbjct: 492 EKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALL 551

Query: 401 NAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460
            A  +F+ I    +  W  MI G  +HG G+ A  L  +M +  IEPD+I+F  LL AC+
Sbjct: 552 LARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACS 611

Query: 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIW 520
           H+GLV EG   F +MR   K+EP ++HY C+VD+L R G++  A   IE+MP+ P+  IW
Sbjct: 612 HSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIW 671

Query: 521 RTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580
             LL  CR + ++ + E VA+ +  ++  N+  YVL++N++A    W + +R+R  + +R
Sbjct: 672 GALLCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQR 731

Query: 581 NLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
            L+K PGCSWIE++G V+ F   D S  +   I   L
Sbjct: 732 GLRKNPGCSWIEIKGRVNIFVAGDSSNPETEKIEAFL 768


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 202/592 (34%), Positives = 304/592 (51%), Gaps = 47/592 (7%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           +IHA ++ +  + + ++   LVA            +A  IF +     ++KD   WN++I
Sbjct: 133 EIHAAILKSNQVLDVYVANALVAMHVR---FGKMSYAARIFDEL----DEKDNITWNSMI 185

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
             ++      EAL  FC + D  +  D+ S   +L A  RLG +  G +IH    K    
Sbjct: 186 AGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLD 245

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
           S+L + N LI +Y +C  + +A            + ++ MI+                  
Sbjct: 246 SNLRIGNTLIDMYSKCCCVAYA-----------GLVFDKMIN------------------ 276

Query: 212 PIRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDD 268
               ++LISW +V+  YAQ       L+   ++  K  + D +   S L  C     +  
Sbjct: 277 ----KDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSH 332

Query: 269 AQALFDKMPKR---DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
           A+ +     KR   D++    +ID YA  G ++ A R+F+ +  +DVV+  +M+  YV N
Sbjct: 333 AKEVHGYTLKRGLSDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHN 392

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
           G + +AL +F  M+ E  + PD  +LV +LSA A L  ++KG  IH ++ +  F L G  
Sbjct: 393 GLANEALGVFYLMK-ETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGST 451

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
             +L+DMY+ CGS+ENA KVF      S+  W  MIN   +HG G+ A +L   ME   +
Sbjct: 452 VNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKL 511

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR 505
            PD ITF  LL AC+H+GL+ EG    E M+  ++LEP  +HY C+VD+LGRA H+E A 
Sbjct: 512 IPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAY 571

Query: 506 NLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565
           + ++ M +EP   +W   L ACR + N  +GE  A+ L+ +D  +  SYVL+SN+FA  G
Sbjct: 572 HFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASG 631

Query: 566 MWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
            W D   VR  MK   LKK PGCSWIE+   VH F VRDKS  +   IY  L
Sbjct: 632 RWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKL 683



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 196/424 (46%), Gaps = 53/424 (12%)

Query: 114 GVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFA 173
           GV  D F+   VLKAC  +  I  G +IHGL+ K  + S +F+ N L+S+Y +C  +  A
Sbjct: 5   GVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGA 64

Query: 174 RQLFDKMGIR-DSVSYNSMIDGYVKSGNIESARELFDSMP-----IRERNLISWNSVLNG 227
           R+LFD+M  R D VS+NS+I  Y  +G    A  LF  M           L++       
Sbjct: 65  RKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACED 124

Query: 228 YAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANM 287
            +  K G++    I +     D+   N+++   V+ GKM  A  +FD++ ++D ++W +M
Sbjct: 125 SSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSM 184

Query: 288 IDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD 347
           I                                G+ +NG   +AL+ F  +Q +  L PD
Sbjct: 185 I-------------------------------AGFTQNGLYNEALQFFCGLQ-DANLKPD 212

Query: 348 DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFE 407
           + SL+ +L+A  +LG++  G  IH Y  K+    N + G  LIDMYSKC  +  A  VF+
Sbjct: 213 EVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFD 272

Query: 408 QIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKE 467
           ++ +  +  W  +I   A +     A  LL +++   ++ D +     L AC+       
Sbjct: 273 KMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACS------- 325

Query: 468 GLLCFELMRRIHKLE-----PELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WR 521
           GL C    + +H         +L     ++D+    G+I  A  + E +  +  DV+ W 
Sbjct: 326 GLRCLSHAKEVHGYTLKRGLSDLMMQNMIIDVYADCGNINYATRMFESIKCK--DVVSWT 383

Query: 522 TLLS 525
           +++S
Sbjct: 384 SMIS 387



 Score = 42.4 bits (98), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 10/160 (6%)

Query: 28  NDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLW 87
           N   +IH  +   GF+        LV  ++   C    E A  +F         K   LW
Sbjct: 431 NKGKEIHGFIFRKGFMLEGSTVNSLVDMYA---CCGSLENAYKVFI----CTRSKSLVLW 483

Query: 88  NAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRK 147
             +I  Y      K A+ +F +M D  +  D  +   +L ACS  GLI EG ++   + K
Sbjct: 484 TTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETM-K 542

Query: 148 VAFGSDLFLQN--CLISLYVRCGYLEFARQLFDKMGIRDS 185
             +  + + ++  CL+ L  R  +LE A      M I  +
Sbjct: 543 CKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPT 582


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 157/390 (40%), Positives = 237/390 (60%), Gaps = 2/390 (0%)

Query: 232 KSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDG 290
           K+G +  A   F++ P RD+   N ML   V   ++ +A+ +FD MP RD+VSW  MI G
Sbjct: 4   KAGRVDLARDAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHG 63

Query: 291 YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
           YA  G V +AR +FD    RD  + ++M+  Y ++  S +ALE++  M     + PD  +
Sbjct: 64  YAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASII-PDCIT 122

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE 410
           LV V+SA + LG +  G  +HR++E ++  L+ K G ALIDMY+KCG IE+A +VF+++ 
Sbjct: 123 LVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMP 182

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470
           +  V  W++MI GLA HGLG  +  L  +M    ++P+ +TF G+L AC H GLV EG  
Sbjct: 183 EKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKK 242

Query: 471 CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNY 530
            F  M  +H +EP ++HYGCMVD+LGR+GH+E AR LI  M  EP+ +IWR LL ACR +
Sbjct: 243 YFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIH 302

Query: 531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSW 590
           +N+ + E     L  +D      YVLLSN++A    W     +R  ++  N++++PG S 
Sbjct: 303 KNVEIAEEAMAKLRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSS 362

Query: 591 IELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           IE +  +HEF   D+   + ++IY +L+ M
Sbjct: 363 IEWDEKIHEFVSGDRLHPRSKEIYRVLEEM 392



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 169/381 (44%), Gaps = 80/381 (20%)

Query: 163 LYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWN 222
           +Y + G ++ AR  FD+  +RD    N M+  YV    +  AR++FD MP+  R+L+SWN
Sbjct: 1   MYAKAGRVDLARDAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPM--RDLVSWN 58

Query: 223 SVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV 282
           ++++GYA ++  +  A +IF+   +RD  SW+SM+    K  +  +A  L+ +M    ++
Sbjct: 59  TMIHGYA-MRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASII 117

Query: 283 S---------------------------------------WANMIDGYAKLGRVDIARRL 303
                                                      +ID YAK G ++ A+R+
Sbjct: 118 PDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRV 177

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           FD MP++DV   ++M+ G   +G   ++L +F  M  E  + P+  + V VL A   +G 
Sbjct: 178 FDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISE-GMKPNGVTFVGVLIACTHVGL 236

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           + +G    R       S+N  HG+                       + +V+H+  M++ 
Sbjct: 237 VSEGKKYFR-------SMNEVHGI-----------------------EPTVEHYGCMVDL 266

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
           L   G  E A  L+  M   + EPD I +  LL AC    + K   +  E M ++  L+P
Sbjct: 267 LGRSGHVEEARQLIRSM---TFEPDTIIWRALLGACR---IHKNVEIAEEAMAKLRVLDP 320

Query: 484 ELQ-HYGCMVDILGRAGHIEA 503
               HY  + +I  +A   E 
Sbjct: 321 LGDGHYVLLSNIYAQANSWEG 341



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 106/248 (42%), Gaps = 36/248 (14%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           E +D F W+++I  Y+     KEAL ++  M    +  D  +   V+ ACS LG +  G 
Sbjct: 81  EDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGA 140

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           ++H  +       DL L   LI +Y +CG +E A+++FD+M  +D  +++SMI G    G
Sbjct: 141 EVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHG 200

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
               +  LF  M       IS     NG                       +++  +L  
Sbjct: 201 LGHESLSLFSKM-------ISEGMKPNG-----------------------VTFVGVLIA 230

Query: 260 CVKCGKMDDAQALFDKMP-----KRDVVSWANMIDGYAKLGRVDIARRLFDEMP-KRDVV 313
           C   G + + +  F  M      +  V  +  M+D   + G V+ AR+L   M  + D +
Sbjct: 231 CTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTI 290

Query: 314 ACNAMMGG 321
              A++G 
Sbjct: 291 IWRALLGA 298



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 28/205 (13%)

Query: 81  KKDPFLWNA-IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           +KD   W++ II   +HGL   E+L +F  M+  G+  +  +   VL AC+ +GL+ EG 
Sbjct: 183 EKDVQTWSSMIIGLANHGLG-HESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGK 241

Query: 140 -------QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSM 191
                  ++HG+   V          C++ L  R G++E ARQL   M    D++ + ++
Sbjct: 242 KYFRSMNEVHGIEPTVEH------YGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRAL 295

Query: 192 IDGYVKSGNIESARE----------LFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQI 241
           +       N+E A E          L D   +   N+ +  +   G A+++  ++     
Sbjct: 296 LGACRIHKNVEIAEEAMAKLRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRR--DN 353

Query: 242 FEKMPERDLISWNSMLHGCVKCGKM 266
            +++P R  I W+  +H  V   ++
Sbjct: 354 IQRIPGRSSIEWDEKIHEFVSGDRL 378


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 155/360 (43%), Positives = 234/360 (65%), Gaps = 1/360 (0%)

Query: 262 KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
           K G +  AQ +FD+MP+R +VS   MI  YAK G V+ AR LFD M +RD+V+ N M+ G
Sbjct: 171 KGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDG 230

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
           Y ++G+   AL +F  +  +    PD+ ++V  LSA +Q+G ++ G  IH ++   +  L
Sbjct: 231 YSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRL 290

Query: 382 NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEME 441
           N K   ALIDMYSKCGS+E A+ VF       +  WNAMI G A+HG  + A  L  EM+
Sbjct: 291 NVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQ 350

Query: 442 RLS-IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500
            ++ ++P DITF G L ACAHAGLV EG+  FE M + + ++P+++HYGC+V +LGRAG 
Sbjct: 351 GITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQ 410

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560
           ++ A  +I++M ME + V+W ++L +C+ +    +G+ +A++LIG + SNS  YVLLSN+
Sbjct: 411 LKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLLSNI 470

Query: 561 FAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +A +G +    +VR++MKE+ + K PG S IE++  VHEF   D+  L+ ++IY ML  M
Sbjct: 471 YALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDREHLKSKEIYTMLRKM 530



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 110/367 (29%), Positives = 198/367 (53%), Gaps = 26/367 (7%)

Query: 78  FREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
           F +  DP  FL+ A I T S      +A +++  +L + ++ ++F+ S +LK+CS     
Sbjct: 85  FHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCS----T 140

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
           + G  IH  + K   G D ++   L+ +Y + G +  A+++FD+M  R  VS  +MI  Y
Sbjct: 141 KSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCY 200

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF-AWQIFEKM-----PERD 249
            K GN+E+AR LFD M   ER+++SWN +++GY+Q   G    A  +F+K+     P+ D
Sbjct: 201 AKQGNVEAARALFDRMC--ERDIVSWNVMIDGYSQ--HGFPSDALMLFQKLLADGKPKPD 256

Query: 250 LISWNSMLHGCVKCGKMDDAQALF----DKMPKRDVVSWANMIDGYAKLGRVDIARRLFD 305
            I+  + L  C + G ++  + +         + +V     +ID Y+K G ++ A  +F+
Sbjct: 257 EITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFN 316

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
           + P++D+VA NAM+ GY  +GYS  AL +FD MQ    L P D + +  L A A  G ++
Sbjct: 317 DTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVN 376

Query: 366 KGVAIHRYLEKDQFSLNGK--HGVALIDMYSKCGSIENAIKVFE--QIEDGSVDHWNAMI 421
           +G+ I   + + ++ +  K  H   L+ +  + G ++ A ++ +   +E  SV  W++++
Sbjct: 377 EGIQIFESMGQ-EYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSV-LWSSVL 434

Query: 422 NGLAIHG 428
               +HG
Sbjct: 435 GSCKLHG 441



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 115/278 (41%), Gaps = 57/278 (20%)

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
            YA  G++  +  LF +    D+    A +     NG   +A  ++  +     ++P++ 
Sbjct: 71  AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSS-QINPNE- 128

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
                 S+I +      G  IH ++ K    L+      L+D+Y+K G + +A KVF+++
Sbjct: 129 ---FTFSSILKSCSTKSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRM 185

Query: 410 ED----------------GSVD---------------HWNAMINGLAIHGLGELAFDLLM 438
            +                G+V+                WN MI+G + HG      D LM
Sbjct: 186 PERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPS---DALM 242

Query: 439 EMERL----SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH------KLEPELQHY 488
             ++L      +PD+IT    L+AC+  G ++ G       R IH      ++   ++  
Sbjct: 243 LFQKLLADGKPKPDEITVVAALSACSQIGALETG-------RWIHVFVNSSRIRLNVKVC 295

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
             ++D+  + G +E A  +  D P + + V W  +++ 
Sbjct: 296 TALIDMYSKCGSLEEAVLVFNDTPRK-DIVAWNAMITG 332



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 79/154 (51%), Gaps = 12/154 (7%)

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDM---YSKCGSIENAIKVFEQIEDGSVDHWNAM 420
           +D+ + IH  + +    ++ ++ V  + +   Y+  G I +++ +F Q  D  +  + A 
Sbjct: 40  VDEVLQIHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAA 99

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA--HAGLVKEGLLCFELMRRI 478
           IN  +I+GL + AF L +++    I P++ TF+ +L +C+     L+   +L F L    
Sbjct: 100 INTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCSTKSGKLIHTHVLKFGL---- 155

Query: 479 HKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP 512
             L+P +     +VDI  + G + +A+ + + MP
Sbjct: 156 -GLDPYVA--TGLVDIYAKGGDVVSAQKVFDRMP 186


>gi|115458312|ref|NP_001052756.1| Os04g0414800 [Oryza sativa Japonica Group]
 gi|32479728|emb|CAE01515.1| OJ991214_12.4 [Oryza sativa Japonica Group]
 gi|113564327|dbj|BAF14670.1| Os04g0414800 [Oryza sativa Japonica Group]
 gi|125590342|gb|EAZ30692.1| hypothetical protein OsJ_14749 [Oryza sativa Japonica Group]
          Length = 545

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 179/573 (31%), Positives = 297/573 (51%), Gaps = 45/573 (7%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LL +C+T   + Q+HAR++  G   +  L  +  A+  +  C  +      +        
Sbjct: 15  LLGRCRTARCLAQLHARIVRLGLHNHHALLARFAAACDALSCPSVAASLLSVAVPVR--- 71

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
                 L NA++ + +     ++AL  F L+       D FS   +L AC+R   +  G 
Sbjct: 72  ------LRNAVLASLARHAPLRDALAQFNLLRGGASRPDAFSFPPLLCACARASSLPTGA 125

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
            +H    ++   +DLF++  LI  Y RCG    AR LFD +     VS+ +++  YV SG
Sbjct: 126 SLHAAAIRLGVDADLFVRTALIQFYGRCGAAAAARALFDSLTNPSEVSWTAIVTAYVNSG 185

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
           +I +ARE                                  +F+++P R+++ WN+M+ G
Sbjct: 186 DILTARE----------------------------------LFDQIPHRNVVHWNAMVDG 211

Query: 260 CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM 319
            VKCG ++ A+ LFD+MP+R   ++ ++I GY   G +  AR LFD++  RD+ A + M+
Sbjct: 212 YVKCGDLEGARKLFDEMPERTPAAYTSLIGGYLNAGNMGAARTLFDKLEDRDLFAWSTMI 271

Query: 320 GGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF 379
            G  +NGY  +AL IF+  Q +  + PD+  +V ++SA +QLG+I     I  Y+     
Sbjct: 272 SGCAQNGYPGEALRIFNEFQ-KQEICPDELVIVGLMSACSQLGNITLARWIEGYIMIYPI 330

Query: 380 SLNGKHGVA-LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
            +N  H +A LI+M +KCG++E A  +FE +    V  + +M+ G  +HG    A +L  
Sbjct: 331 DMNNVHVMAGLINMNAKCGNMERATLLFESMSVRDVFSYCSMMQGHCLHGSASKAVELFS 390

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
           +M    I PD+  FT +L AC+HAGLV+EG   F++M+  + + P   HY C+V +LGR 
Sbjct: 391 QMLLEGITPDNAAFTVVLTACSHAGLVEEGKRYFDMMKNEYMIVPSGDHYACLVSLLGRF 450

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           G +  A  LI+ MP EP+   W  LL  C+ + ++ +G+  AK L  ++  N+ +YV LS
Sbjct: 451 GMLRDAYELIKSMPGEPHPGAWGALLGGCKFHCDIELGKIAAKKLFEIEPENAGNYVSLS 510

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           N++A +  W +    R+ M  R + K+ GC+ +
Sbjct: 511 NIYANIDRWGNVSETRAEMTGRGITKIAGCTLV 543


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 187/550 (34%), Positives = 313/550 (56%), Gaps = 17/550 (3%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLML-DNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +D   WN  I  Y++     +A+ ++ LML D  +++++ + S +L  CS+   ++ G Q
Sbjct: 100 RDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQ 159

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           I+G + K  FGSD+F+ + L+ +Y + G +  A++ FD+M  R+ V  N+MI G ++ G 
Sbjct: 160 INGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGM 219

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF-AWQIFEKMP----ERDLISWNS 255
           IE ++ LF    ++ER+ ISW  ++ G  Q  +GL+  A  +F +M       D  ++ S
Sbjct: 220 IEESQRLF--CGLKERDSISWTIMITGLMQ--NGLEREALDMFREMRLAGFAMDQFTFGS 275

Query: 256 MLHGC---VKCGKMDDAQALFDKMPKRD-VVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           +L  C   +  G+     A   +   +D V   + ++D Y+K   +  A  +F  MP+++
Sbjct: 276 VLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKN 335

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           V++  AM+ GY +NG+S +A++IF  MQ    + PDD +L  V+S+ A L  +++G   H
Sbjct: 336 VISWTAMLVGYGQNGFSEEAVKIFFEMQ-RNGVEPDDFTLGSVISSCANLASLEEGAQFH 394

Query: 372 -RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
            R L     S       ALI +Y KCGS EN+ ++F ++       W A++ G A  G  
Sbjct: 395 CRALVSGLISFITVSN-ALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKA 453

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
                L   M    ++PD +TF G+L+AC+ AGLV++GL  FE M + H + P + H  C
Sbjct: 454 NETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTC 513

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           ++D+LGRAG +E ARN I +MP  P+ V W TLLS+CR + ++ +G+  A  LI ++  N
Sbjct: 514 IIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQN 573

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQV 610
            +SYVLLS+++A  G W+   ++R  M+++ ++K PG SWI+ +G VH F   D+S   +
Sbjct: 574 PASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFL 633

Query: 611 RDIYYMLDNM 620
             IY  L+ +
Sbjct: 634 GQIYAELEKL 643



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 126/458 (27%), Positives = 216/458 (47%), Gaps = 45/458 (9%)

Query: 116 SVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQ 175
           S   + ASL LK C       +  ++H L+ K     + FL N LI+ Y + G L +A  
Sbjct: 3   SSSNYYASL-LKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHH 61

Query: 176 LFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKS-- 233
           +FD +   +  S+N+++  Y K G +   +++F+ MP R+   +SWN  ++GYA   S  
Sbjct: 62  VFDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDG--VSWNLAISGYANYGSCS 119

Query: 234 -------------------------------------GLQFAWQIFEKMPERDLISWNSM 256
                                                G Q   QI +     D+   + +
Sbjct: 120 DAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPL 179

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
           +    K G + DA+  FD+MP+R+VV    MI G  + G ++ ++RLF  + +RD ++  
Sbjct: 180 VDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWT 239

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
            M+ G ++NG   +AL++F  M+   +   D  +   VL+A   L  + +G  IH Y+ +
Sbjct: 240 IMITGLMQNGLEREALDMFREMRLAGFAM-DQFTFGSVLTACGSLLALGEGKQIHAYVIR 298

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
                N   G AL+DMYSKC SI++A  VF+++   +V  W AM+ G   +G  E A  +
Sbjct: 299 TDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKI 358

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
             EM+R  +EPDD T   ++++CA+   ++EG   F     +  L   +     ++ + G
Sbjct: 359 FFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQ-FHCRALVSGLISFITVSNALITLYG 417

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534
           + G  E +  L  +M +  ++V W  LL+    +   N
Sbjct: 418 KCGSTENSHRLFTEMNIR-DEVSWTALLAGYAQFGKAN 454



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 170/373 (45%), Gaps = 44/373 (11%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           +++D   W  +I         +EAL MF  M   G ++D+F+   VL AC  L  + EG 
Sbjct: 231 KERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGK 290

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           QIH  + +     ++F+ + L+ +Y +C  ++ A  +F +M  ++ +S+ +M+ GY ++G
Sbjct: 291 QIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNG 350

Query: 200 NIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISW---- 253
             E A ++F  M     E +  +  SV++  A L S L+   Q   +     LIS+    
Sbjct: 351 FSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLAS-LEEGAQFHCRALVSGLISFITVS 409

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
           N+++    KCG  +++  LF +M  RD VSW  ++ GYA+ G+ +    LF+ M      
Sbjct: 410 NALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHG-- 467

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
                                         L PD  + + VLSA ++ G ++KG+     
Sbjct: 468 ------------------------------LKPDGVTFIGVLSACSRAGLVEKGLQYFES 497

Query: 374 LEKDQFSLN-GKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHG--- 428
           + K+   +    H   +ID+  + G +E A      +     V  W  +++   +HG   
Sbjct: 498 MIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDME 557

Query: 429 LGELAFDLLMEME 441
           +G+ A D L+ +E
Sbjct: 558 IGKWAADSLIALE 570


>gi|334187761|ref|NP_197403.2| mitochondrial editing factor 18 [Arabidopsis thaliana]
 gi|223635651|sp|P0C8Q8.1|PP394_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g19020, mitochondrial; Flags: Precursor
 gi|332005257|gb|AED92640.1| mitochondrial editing factor 18 [Arabidopsis thaliana]
          Length = 685

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 206/646 (31%), Positives = 336/646 (52%), Gaps = 76/646 (11%)

Query: 9   QPCNSTQSTLLLLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLT 65
           +  ++ ++ +  L  C + NDV    QIH R++ +G   N ++   ++  ++   C  L 
Sbjct: 36  ESSDTERALVSALGSCASSNDVTCGRQIHCRVLKSGLDSNGYICNSVLNMYA--KCRLLA 93

Query: 66  E----FARYIFFKYHAFREKKDPF-----LWNAI-----------------IKTYSHGLD 99
           +    F  +      +F    D +     LW+A+                 IK Y+    
Sbjct: 94  DAESVFRDHAKLDSASFNIMVDGYVRSRRLWDALKLFDVMPERSCVSYTTLIKGYAQNNQ 153

Query: 100 PKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNC 159
             EA+ +F  M + G+ +++ + + V+ ACS LG I +   +  L  K+     +F+   
Sbjct: 154 WSEAMELFREMRNLGIMLNEVTLATVISACSHLGGIWDCRMLQSLAIKLKLEGRVFVSTN 213

Query: 160 LISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLI 219
           L+ +Y  C  L+ AR+LFD+M  R+ V++N M++GY K+G IE A ELFD   I E++++
Sbjct: 214 LLHMYCLCLCLKDARKLFDEMPERNLVTWNVMLNGYSKAGLIEQAEELFDQ--ITEKDIV 271

Query: 220 SWNSVLNGYAQLKSGLQFAWQIFEKM------PER----DLISWNS---------MLHGC 260
           SW ++++G  + K+ L  A   + +M      P      DL+S ++          LHG 
Sbjct: 272 SWGTMIDGCLR-KNQLDEALVYYTEMLRCGMKPSEVMMVDLLSASARSVGSSKGLQLHGT 330

Query: 261 V-----KCGKMDDAQAL---------------FDKMPKRDVVSWANMIDGYAKLGRVDIA 300
           +      C     A  +               F+   K  + S   +I G+ K G V+ A
Sbjct: 331 IVKRGFDCYDFLQATIIHFYAVSNDIKLALQQFEASVKDHIASRNALIAGFVKNGMVEQA 390

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
           R +FD+   +D+ + NAM+ GY ++     AL +F  M     + PD  ++V V SAI+ 
Sbjct: 391 REVFDQTHDKDIFSWNAMISGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISS 450

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ---IEDGSVDHW 417
           LG +++G   H YL       N     A+IDMY+KCGSIE A+ +F Q   I   ++  W
Sbjct: 451 LGSLEEGKRAHDYLNFSTIPPNDNLTAAIIDMYAKCGSIETALNIFHQTKNISSSTISPW 510

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
           NA+I G A HG  +LA DL  +++ L I+P+ ITF G+L+AC HAGLV+ G   FE M+ 
Sbjct: 511 NAIICGSATHGHAKLALDLYSDLQSLPIKPNSITFVGVLSACCHAGLVELGKTYFESMKS 570

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
            H +EP+++HYGCMVD+LG+AG +E A+ +I+ MP++ + +IW  LLSA R + N+ + E
Sbjct: 571 DHGIEPDIKHYGCMVDLLGKAGRLEEAKEMIKKMPVKADVMIWGMLLSASRTHGNVEIAE 630

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583
             A  L  +D S+    V+LSN++A  G W D   VR  M+ R+++
Sbjct: 631 LAATELAAIDPSHGGCKVMLSNVYADAGRWEDVALVREEMRTRDVE 676


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 183/582 (31%), Positives = 301/582 (51%), Gaps = 53/582 (9%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D  +  AI+  YS      +  + F    ++ +  ++++ S ++ A S  G I+  + 
Sbjct: 256 ERDVVIGTAILNVYSRDTSVLDTAIKF---FESMIERNEYTWSTMIAALSHGGRIDAAIA 312

Query: 141 IH--GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
           ++    ++ +A       +  LI+   +CG ++ AR LF+++     VS+N++I GY+++
Sbjct: 313 VYERDPVKSIA------CRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQN 366

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQ---------------------------- 230
           G +  A+ELFD MP R  N ISW  ++ GYAQ                            
Sbjct: 367 GMVNEAKELFDKMPFR--NTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTS 424

Query: 231 ----------LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRD 280
                     L++G Q      +   + +  + N+++    KC  M+ A+ +F +M  +D
Sbjct: 425 IFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKD 484

Query: 281 VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQC 340
           +VSW + +    +   +D AR  FD M  RD V+   ++  Y     S +A+  F  M C
Sbjct: 485 IVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFC 544

Query: 341 ELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE 400
           E  L P+   L I+L     LG    G  IH    K           ALI MY KCG  +
Sbjct: 545 EHEL-PNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCAD 603

Query: 401 NAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460
           +  ++F+ +E+  +  WN +I G A HGLG  A  +   ME   + P+++TF GLLNAC+
Sbjct: 604 SR-RIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACS 662

Query: 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIW 520
           HAGLV EG   F+ M + + L P  +HY CMVD+LGR G ++ A   I DMP+EP+ VIW
Sbjct: 663 HAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIW 722

Query: 521 RTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580
             LL AC+ ++N  +G+  A+ L  ++ SN+ +YV+LSN+++ LGMW +   VR +MK++
Sbjct: 723 SALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQ 782

Query: 581 NLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWT 622
            + K PGCSW +++  +H F   DK   Q+ +I   L+ ++T
Sbjct: 783 GVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYT 824



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 113/362 (31%), Positives = 192/362 (53%), Gaps = 15/362 (4%)

Query: 166 RCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVL 225
           R G +  AR++FD M  RD +++NSMI  Y  +G  ++AR+L+D+  I   N+ +   +L
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDA--ISGGNMRTGAILL 103

Query: 226 NGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWA 285
           +GY +L   L+ A ++F+ M ER+ ++WN+M+   V+ G +  A+ LFD MP RDV SW 
Sbjct: 104 SGYGRLGRVLE-ARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWN 162

Query: 286 NMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLH 345
           +M+ GY    ++  AR LF++MP+R++V+   M+ GY R     KA +IF  M  E  L 
Sbjct: 163 SMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLL- 221

Query: 346 PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSI-ENAIK 404
           PD ++    LSA+  LG++D   ++     K  F  +   G A++++YS+  S+ + AIK
Sbjct: 222 PDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIK 281

Query: 405 VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL 464
            FE + + +   W+ MI  L+  G  + A  +       SI       TGL    A  G 
Sbjct: 282 FFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGL----AQCGR 337

Query: 465 VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
           + +  + FE +      EP +  +  ++    + G +  A+ L + MP   N + W  ++
Sbjct: 338 IDDARILFEQIP-----EPIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NTISWAGMI 391

Query: 525 SA 526
           + 
Sbjct: 392 AG 393



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 153/606 (25%), Positives = 255/606 (42%), Gaps = 155/606 (25%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   WN++I  Y H   P  A  ++    D     +  + +++L    RLG + E  +
Sbjct: 62  RRDIIAWNSMISAYCHNGMPDAARDLY----DAISGGNMRTGAILLSGYGRLGRVLEARR 117

Query: 141 I-HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           +  G+L +     +    N +IS YV+ G +  AR+LFD M  RD  S+NSM+ GY  S 
Sbjct: 118 VFDGMLER-----NTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSL 172

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP------------- 246
            +  AR LF+ MP  ERNL+SW  +++GY ++++  + AW IF KM              
Sbjct: 173 QMVDARNLFEKMP--ERNLVSWTVMISGYGRIENHGK-AWDIFCKMHREGLLPDQSNFAS 229

Query: 247 --------------------------ERDLISWNSMLHGCVK-CGKMDDAQALFDKMPKR 279
                                     ERD++   ++L+   +    +D A   F+ M +R
Sbjct: 230 ALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIER 289

Query: 280 DVVSWANM-------------------------------IDGYAKLGRVDIARRLFDEMP 308
           +  +W+ M                               I G A+ GR+D AR LF+++P
Sbjct: 290 NEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIP 349

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQC---------------------------E 341
           +  VV+ NA++ GY++NG   +A E+FD M                             E
Sbjct: 350 EPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQE 409

Query: 342 LY---LHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS 398
           L+   + P  +SL  +  A + +  ++ G  +H    K     N     ALI MY KC +
Sbjct: 410 LHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRN 469

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
           +E A +VF ++    +  WN+ +  L  + L + A +    M    +  DD+++T +++A
Sbjct: 470 MEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM----LSRDDVSWTTIISA 525

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
            AHA    E +  F+ M   H+L                                 PN  
Sbjct: 526 YAHAEQSNEAMGAFKTMFCEHEL---------------------------------PNSP 552

Query: 519 IWRTLLSACRNYENLNVGEPVAKHLI--GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSM 576
           I   LL  C +     +G+ +    I  GMDS    +  L+S M+   G   D+RR+  +
Sbjct: 553 ILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALIS-MYFKCGC-ADSRRIFDL 610

Query: 577 MKERNL 582
           M+ER++
Sbjct: 611 MEERDI 616



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/417 (23%), Positives = 174/417 (41%), Gaps = 58/417 (13%)

Query: 3   VSANYNQ-PCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPC 61
           V   +N   CN+    + +  KC+ +    Q+ +RM+T   +        LV +      
Sbjct: 448 VGCQFNSFACNAL---ITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQN------ 498

Query: 62  TPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFS 121
             L + AR  F    +    +D   W  II  Y+H     EA+  F  M       +   
Sbjct: 499 -DLLDEARNTFDNMLS----RDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPI 553

Query: 122 ASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
            +++L  C  LG  + G QIH +  K+   S+L + N LIS+Y +CG  + +R++FD M 
Sbjct: 554 LTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDLME 612

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQI 241
            RD  ++N++I GY + G    A +++  M                     +G+      
Sbjct: 613 ERDIFTWNTIITGYAQHGLGREAIKMYQHME-------------------SAGV------ 647

Query: 242 FEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS-----WANMIDGYAKLGR 296
              +P    +++  +L+ C   G +D+    F  M +   ++     +A M+D   + G 
Sbjct: 648 ---LPNE--VTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGD 702

Query: 297 VDIARRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELY-LHPDDASLVIV 354
           V  A +   +MP + D V  +A++G    +    K  EI      +L+ + P +A   ++
Sbjct: 703 VQGAEQFIYDMPIEPDTVIWSALLGACKIH----KNAEIGKRAAEKLFRIEPSNAGNYVM 758

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED 411
           LS I     +   VA  R + K Q  +  + G +   +  K  S     K  EQIE+
Sbjct: 759 LSNIYSSLGMWGEVAEVRKIMKQQGVIK-EPGCSWTQIKDKMHSFVTGDKQHEQIEE 814


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 181/545 (33%), Positives = 295/545 (54%), Gaps = 29/545 (5%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           K +   W A+I          EAL +F  M+  GV  +  + +  + AC+ L L+  G +
Sbjct: 324 KPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGRE 383

Query: 141 IHGLLRKVA-FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           IHG   KV    SDL + N L+  Y +C  +E AR+ F  +   D VS+N+M+ GY   G
Sbjct: 384 IHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRG 443

Query: 200 NIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKM------PERDLI 251
           + E A EL   M  +  E ++I+WN ++ G+ Q   G + A + F++M      P    I
Sbjct: 444 SHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDG-KAALEFFQRMHSMGMDPNTTTI 502

Query: 252 SWNSMLHGC-----VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
           S    L  C     +K GK      L + +     V  A +I  Y+    +++A  +F E
Sbjct: 503 S--GALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSA-LISMYSGCDSLEVACSVFSE 559

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           +  RDVV  N+++    ++G S+ AL++   M     +  +  ++V  L A ++L  + +
Sbjct: 560 LSTRDVVVWNSIISACAQSGRSVNALDLLREMNLS-NVEVNTVTMVSALPACSKLAALRQ 618

Query: 367 GVAIHRY-----LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
           G  IH++     L+   F LN     +LIDMY +CGSI+ + ++F+ +    +  WN MI
Sbjct: 619 GKEIHQFIIRCGLDTCNFILN-----SLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMI 673

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
           +   +HG G  A +L      + ++P+ ITFT LL+AC+H+GL++EG   F++M+  + +
Sbjct: 674 SVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAM 733

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
           +P ++ Y CMVD+L RAG        IE MP EPN  +W +LL ACR + N ++ E  A+
Sbjct: 734 DPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAAR 793

Query: 542 HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
           +L  ++  +S +YVL++N+++  G W DA ++R +MKER + K PGCSWIE++  +H F 
Sbjct: 794 YLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFV 853

Query: 602 VRDKS 606
           V D S
Sbjct: 854 VGDTS 858



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 149/621 (23%), Positives = 279/621 (44%), Gaps = 118/621 (19%)

Query: 20  LLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+KC+ L ++    Q+HA+++  G      L ++L+  +  + C    E AR +F K  
Sbjct: 95  ILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCV---EDARRMFDKM- 150

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
               +++ F W AI++ Y    D +E + +F LM++ GV  D F    V KACS L    
Sbjct: 151 ---SERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYR 207

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G  ++  +  + F  +  ++  ++ ++++CG ++ AR+ F+++  +D   +N M+ GY 
Sbjct: 208 VGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYT 267

Query: 197 KSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP-----ERD 249
             G  + A +    M +   + + ++WN++++GYAQ     + A + F +M      + +
Sbjct: 268 SKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQ-SGQFEEASKYFLEMGGLKDFKPN 326

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKM------PKRDVVSWA------------------ 285
           ++SW +++ G  + G   +A ++F KM      P    ++ A                  
Sbjct: 327 VVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHG 386

Query: 286 ----------------NMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSM 329
                           +++D YAK   V++ARR F  + + D+V+ NAM+ GY   G   
Sbjct: 387 YCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHE 446

Query: 330 KALEIFDNMQCE----------------------------------LYLHPDDASLVIVL 355
           +A+E+   M+ +                                  + + P+  ++   L
Sbjct: 447 EAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGAL 506

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
           +A  Q+ ++  G  IH Y+ ++   L+   G ALI MYS C S+E A  VF ++    V 
Sbjct: 507 AACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVV 566

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            WN++I+  A  G    A DLL EM   ++E + +T    L AC+    +++G       
Sbjct: 567 VWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQG------- 619

Query: 476 RRIHKLEPELQHYGC------MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRN 529
           + IH+         C      ++D+ GR G I+ +R + + MP + + V W  ++S    
Sbjct: 620 KEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP-QRDLVSWNVMISV--- 675

Query: 530 YENLNVGEPVAKHLIGMDSSN 550
                       H  GMD+ N
Sbjct: 676 ---------YGMHGFGMDAVN 687



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 174/373 (46%), Gaps = 22/373 (5%)

Query: 222 NSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC-----VKCGKMDDAQALFDKM 276
           N VLN  A L S +          P+  +  + S+L  C     ++ G    AQ + + +
Sbjct: 67  NGVLNNAAMLLSSMDLT------NPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGV 120

Query: 277 PKRDVVSW--ANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEI 334
              DV  +  + +++ Y + G V+ ARR+FD+M +R+V +  A+M  Y   G   + +++
Sbjct: 121 ---DVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKL 177

Query: 335 FDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYS 394
           F  M  E  + PD      V  A ++L +   G  ++ Y+    F  N     +++DM+ 
Sbjct: 178 FYLMVNE-GVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFI 236

Query: 395 KCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTG 454
           KCG ++ A + FE+IE   V  WN M++G    G  + A   + +M+   ++PD +T+  
Sbjct: 237 KCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNA 296

Query: 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPME 514
           +++  A +G  +E    F  M  +   +P +  +  ++    + G+   A ++   M +E
Sbjct: 297 IISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLE 356

Query: 515 ---PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV--LLSNMFAGLGMWND 569
              PN +   + +SAC N   L  G  +  + I ++  +S   V   L + +A       
Sbjct: 357 GVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEV 416

Query: 570 ARRVRSMMKERNL 582
           ARR   M+K+ +L
Sbjct: 417 ARRKFGMIKQTDL 429



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 136/292 (46%), Gaps = 24/292 (8%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           +IH  ++      +T + + L++ +S   C  L E A  +F +       +D  +WN+II
Sbjct: 520 EIHGYVLRNHIELSTGVGSALISMYSG--CDSL-EVACSVFSELST----RDVVVWNSII 572

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
              +       AL +   M  + V V+  +    L ACS+L  + +G +IH  + +    
Sbjct: 573 SACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLD 632

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD-- 209
           +  F+ N LI +Y RCG ++ +R++FD M  RD VS+N MI  Y   G    A  LF   
Sbjct: 633 TCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXF 692

Query: 210 -SMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLISWNSMLHGCV-----K 262
            +M ++  N I++ ++L+  +   SGL +  W+ F+ M     +      + C+     +
Sbjct: 693 RTMGLKP-NHITFTNLLSACSH--SGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSR 749

Query: 263 CGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDI----ARRLFDEMPK 309
            G+ ++     +KMP + +   W +++         D+    AR LF+  P+
Sbjct: 750 AGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQ 801


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 183/582 (31%), Positives = 301/582 (51%), Gaps = 53/582 (9%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D  +  AI+  YS      +  + F    ++ +  ++++ S ++ A S  G I+  + 
Sbjct: 256 ERDVVIGTAILNVYSRDTSVLDTAIKF---FESMIERNEYTWSTMIAALSHGGRIDAAIA 312

Query: 141 IH--GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
           ++    ++ +A       +  LI+   +CG ++ AR LF+++     VS+N++I GY+++
Sbjct: 313 VYERDPVKSIA------CRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQN 366

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQ---------------------------- 230
           G +  A+ELFD MP R  N ISW  ++ GYAQ                            
Sbjct: 367 GMVNEAKELFDKMPFR--NTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTS 424

Query: 231 ----------LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRD 280
                     L++G Q      +   + +  + N+++    KC  M+ A+ +F +M  +D
Sbjct: 425 IFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKD 484

Query: 281 VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQC 340
           +VSW + +    +   +D AR  FD M  RD V+   ++  Y     S +A+  F  M C
Sbjct: 485 IVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFC 544

Query: 341 ELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE 400
           E  L P+   L I+L     LG    G  IH    K           ALI MY KCG  +
Sbjct: 545 EHEL-PNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCAD 603

Query: 401 NAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460
           +  ++F+ +E+  +  WN +I G A HGLG  A  +   ME   + P+++TF GLLNAC+
Sbjct: 604 SR-RIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACS 662

Query: 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIW 520
           HAGLV EG   F+ M + + L P  +HY CMVD+LGR G ++ A   I DMP+EP+ VIW
Sbjct: 663 HAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIW 722

Query: 521 RTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580
             LL AC+ ++N  +G+  A+ L  ++ SN+ +YV+LSN+++ LGMW +   VR +MK++
Sbjct: 723 SALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQ 782

Query: 581 NLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWT 622
            + K PGCSW +++  +H F   DK   Q+ +I   L+ ++T
Sbjct: 783 GVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYT 824



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 113/362 (31%), Positives = 192/362 (53%), Gaps = 15/362 (4%)

Query: 166 RCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVL 225
           R G +  AR++FD M  RD +++NSMI  Y  +G  ++AR+L+D+  I   N+ +   +L
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDA--ISGGNMRTGAILL 103

Query: 226 NGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWA 285
           +GY +L   L+ A ++F+ M ER+ ++WN+M+   V+ G +  A+ LFD MP RDV SW 
Sbjct: 104 SGYGRLGRVLE-ARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWN 162

Query: 286 NMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLH 345
           +M+ GY    ++  AR LF++MP+R++V+   M+ GY R     KA +IF  M  E  L 
Sbjct: 163 SMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLL- 221

Query: 346 PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSI-ENAIK 404
           PD ++    LSA+  LG++D   ++     K  F  +   G A++++YS+  S+ + AIK
Sbjct: 222 PDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIK 281

Query: 405 VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL 464
            FE + + +   W+ MI  L+  G  + A  +       SI       TGL    A  G 
Sbjct: 282 FFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGL----AQCGR 337

Query: 465 VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
           + +  + FE +      EP +  +  ++    + G +  A+ L + MP   N + W  ++
Sbjct: 338 IDDARILFEQIP-----EPIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NTISWAGMI 391

Query: 525 SA 526
           + 
Sbjct: 392 AG 393



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 153/606 (25%), Positives = 255/606 (42%), Gaps = 155/606 (25%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   WN++I  Y H   P  A  ++    D     +  + +++L    RLG + E  +
Sbjct: 62  RRDIIAWNSMISAYCHNGMPDAARDLY----DAISGGNMRTGAILLSGYGRLGRVLEARR 117

Query: 141 I-HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           +  G+L +     +    N +IS YV+ G +  AR+LFD M  RD  S+NSM+ GY  S 
Sbjct: 118 VFDGMLER-----NTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSL 172

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP------------- 246
            +  AR LF+ MP  ERNL+SW  +++GY ++++  + AW IF KM              
Sbjct: 173 QMVDARNLFEKMP--ERNLVSWTVMISGYGRIENHGK-AWDIFCKMHREGLLPDQSNFAS 229

Query: 247 --------------------------ERDLISWNSMLHGCVK-CGKMDDAQALFDKMPKR 279
                                     ERD++   ++L+   +    +D A   F+ M +R
Sbjct: 230 ALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIER 289

Query: 280 DVVSWANM-------------------------------IDGYAKLGRVDIARRLFDEMP 308
           +  +W+ M                               I G A+ GR+D AR LF+++P
Sbjct: 290 NEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIP 349

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQC---------------------------E 341
           +  VV+ NA++ GY++NG   +A E+FD M                             E
Sbjct: 350 EPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQE 409

Query: 342 LY---LHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS 398
           L+   + P  +SL  +  A + +  ++ G  +H    K     N     ALI MY KC +
Sbjct: 410 LHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRN 469

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
           +E A +VF ++    +  WN+ +  L  + L + A +    M    +  DD+++T +++A
Sbjct: 470 MEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM----LSRDDVSWTTIISA 525

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
            AHA    E +  F+ M   H+L                                 PN  
Sbjct: 526 YAHAEQSNEAMGAFKTMFCEHEL---------------------------------PNSP 552

Query: 519 IWRTLLSACRNYENLNVGEPVAKHLI--GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSM 576
           I   LL  C +     +G+ +    I  GMDS    +  L+S M+   G   D+RR+  +
Sbjct: 553 ILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALIS-MYFKCGC-ADSRRIFDL 610

Query: 577 MKERNL 582
           M+ER++
Sbjct: 611 MEERDI 616



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/417 (23%), Positives = 174/417 (41%), Gaps = 58/417 (13%)

Query: 3   VSANYNQ-PCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPC 61
           V   +N   CN+    + +  KC+ +    Q+ +RM+T   +        LV +      
Sbjct: 448 VGCQFNSFACNAL---ITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQN------ 498

Query: 62  TPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFS 121
             L + AR  F    +    +D   W  II  Y+H     EA+  F  M       +   
Sbjct: 499 -DLLDEARNTFDNMLS----RDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPI 553

Query: 122 ASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
            +++L  C  LG  + G QIH +  K+   S+L + N LIS+Y +CG  + +R++FD M 
Sbjct: 554 LTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDLME 612

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQI 241
            RD  ++N++I GY + G    A +++  M                     +G+      
Sbjct: 613 ERDIFTWNTIITGYAQHGLGREAIKMYQHME-------------------SAGV------ 647

Query: 242 FEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS-----WANMIDGYAKLGR 296
              +P    +++  +L+ C   G +D+    F  M +   ++     +A M+D   + G 
Sbjct: 648 ---LPNE--VTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGD 702

Query: 297 VDIARRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELY-LHPDDASLVIV 354
           V  A +   +MP + D V  +A++G    +    K  EI      +L+ + P +A   ++
Sbjct: 703 VQGAEQFIYDMPIEPDTVIWSALLGACKIH----KNAEIGKRAAEKLFRIEPSNAGNYVM 758

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED 411
           LS I     +   VA  R + K Q  +  + G +   +  K  S     K  EQIE+
Sbjct: 759 LSNIYSSLGMWGEVAEVRKIMKQQGVIK-EPGCSWTQIKDKMHSFVTGDKQHEQIEE 814


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 192/602 (31%), Positives = 312/602 (51%), Gaps = 61/602 (10%)

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           AR +F    A   ++D   W  ++   +      +A+  F  M+  G++  +F  + VL 
Sbjct: 116 ARVVF----AQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLS 171

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           +C+       G ++H  + K+   S + + N ++ +Y +CG  E AR +F++M +R   S
Sbjct: 172 SCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESS 231

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQ-FAWQIFEKM- 245
           +N+M+  Y   G ++ A  +F++M   ER+++SWN+++ GY Q  +GL   A + F +M 
Sbjct: 232 WNAMVSLYTHQGRMDLALSMFENM--EERSIVSWNAIIAGYNQ--NGLDDMALKFFSRML 287

Query: 246 ----PERDLISWNSMLHGCV-----------------------------------KCGKM 266
                E D  +  S+L  C                                    K G +
Sbjct: 288 TASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSV 347

Query: 267 DDAQALFDKMPKRD--VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVR 324
           + A+ + DK    D  V+S+  +++GY KLG    AR +FD M  RDV+A  AM+ GY +
Sbjct: 348 ETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQ 407

Query: 325 NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH----RYLEKDQFS 380
           NG + +A+E+F +M       P+  +L  VLSA A L ++  G  IH    R L++   S
Sbjct: 408 NGQNDEAMELFRSM-IRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVS 466

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQI-EDGSVDHWNAMINGLAIHGLGELAFDLLME 439
           ++     A+I +Y++ GS+  A +VF+QI        W +MI  LA HGLGE A  L  E
Sbjct: 467 VSN----AIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEE 522

Query: 440 MERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG 499
           M R+ ++PD +T+ G+ +AC HAG + +G   +E M   H + PE+ HY CMVD+L RAG
Sbjct: 523 MLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAG 582

Query: 500 HIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559
            +  A   I+ MP+ P+ V+W +LL+ACR  +N ++ E  A+ L+ +D  NS +Y  L+N
Sbjct: 583 LLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALAN 642

Query: 560 MFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDN 619
           +++  G WNDA R+  + K++ +KK  G SW  ++  VH F   D    Q   I      
Sbjct: 643 VYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQRDAICKKAAE 702

Query: 620 MW 621
           MW
Sbjct: 703 MW 704



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 123/496 (24%), Positives = 185/496 (37%), Gaps = 140/496 (28%)

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G  IH    K       +L N L+S Y R G                           V 
Sbjct: 44  GRAIHAHAVKAGLLVSAYLCNNLLSYYARAG---------------------------VG 76

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSM 256
            G    AR LFD +P   RN  +WNS+L+ YA  KSG L  A  +F +MPERD +SW  M
Sbjct: 77  RGCFHEARRLFDDIPYARRNAFTWNSLLSMYA--KSGRLADARVVFAQMPERDAVSWTVM 134

Query: 257 LHGCVKCGKMDDAQALFDKM------PK--------------------RDVVSWA----- 285
           + G  + G+  DA   F  M      P                     R V S+      
Sbjct: 135 VVGLNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGL 194

Query: 286 --------NMIDGYAKLGRVDIARRLFDEMP----------------------------- 308
                   +++  Y K G  + AR +F+ M                              
Sbjct: 195 SSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFEN 254

Query: 309 --KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
             +R +V+ NA++ GY +NG    AL+ F  M     + PD+ ++  VLSA A L  +  
Sbjct: 255 MEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKM 314

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIK---------------------- 404
           G  +H Y+ +     + +   ALI  Y+K GS+E A +                      
Sbjct: 315 GKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGY 374

Query: 405 -----------VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
                      VF+ + +  V  W AMI G   +G  + A +L   M R   EP+  T  
Sbjct: 375 VKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLA 434

Query: 454 GLLNACAHAGLVKEG--LLCFELMRRIHKL-EPELQHYGCMVDILGRAGHIEAARNLIED 510
            +L+ACA    +  G  + C    R I  L E  +     ++ +  R+G +  AR + + 
Sbjct: 435 AVLSACASLAYLGYGKQIHC----RAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQ 490

Query: 511 MPMEPNDVIWRTLLSA 526
           +      V W +++ A
Sbjct: 491 ICWRKETVTWTSMIVA 506



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 88/420 (20%), Positives = 163/420 (38%), Gaps = 106/420 (25%)

Query: 31  NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK----------YHAFRE 80
            Q+H+ ++ TG   ++ +   L+++++ S      E AR I  K          + A  E
Sbjct: 316 KQMHSYILRTGMPYSSQIMNALISTYAKSGS---VETARRIMDKAVVADLNVISFTALLE 372

Query: 81  -------------------KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFS 121
                               +D   W A+I  Y       EA+ +F  M+ +G   +  +
Sbjct: 373 GYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHT 432

Query: 122 ASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
            + VL AC+ L  +  G QIH    +      + + N +I++Y R G +  AR++FD++ 
Sbjct: 433 LAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQIC 492

Query: 182 IR-DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQ 240
            R ++V++ SMI    + G  E A  LF+ M                   L+ G++    
Sbjct: 493 WRKETVTWTSMIVALAQHGLGEQAIVLFEEM-------------------LRVGVK---- 529

Query: 241 IFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR-----DVVSWANMIDGYAKLG 295
                P+R  +++  +   C   G +D  +  +++M        ++  +A M+D  A+ G
Sbjct: 530 -----PDR--VTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAG 582

Query: 296 RVDIARRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
            +  A      MP   D V   +++                    C +  + D A L   
Sbjct: 583 LLTEAHEFIQRMPVAPDTVVWGSLLAA------------------CRVRKNADLAEL--- 621

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
             A  +L  ID                N     AL ++YS CG   +A ++++  +D +V
Sbjct: 622 --AAEKLLSIDPD--------------NSGAYSALANVYSACGRWNDAARIWKLRKDKAV 665


>gi|449455116|ref|XP_004145299.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 722

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 210/696 (30%), Positives = 347/696 (49%), Gaps = 102/696 (14%)

Query: 13  STQSTLL-----LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF 67
           +TQS LL     L  +C ++  + QIHAR I  GF +N  L++KL+  +++         
Sbjct: 21  ATQSRLLNTLSLLFSRCNSIQHLQQIHARFILHGFHQNPTLSSKLIDCYAN--------- 71

Query: 68  ARYIFFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
              +      F    DP   L+NAI++  +   + +  L+++  M+   +  D+ +   V
Sbjct: 72  LGLLNHSLQVFCSVIDPNLTLFNAILRNLTRYGESERTLLVYQQMVAKSMHPDEETYPFV 131

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLF--LQNCLISLYVRCGYLEFARQLFDKMGIR 183
           L++CS    +  G  IHG L K+ F  DLF  +   L  +Y  C   E A QLFDK  ++
Sbjct: 132 LRSCSSFSNVGFGRTIHGYLVKLGF--DLFDVVATALAEMYEECIEFENAHQLFDKRSVK 189

Query: 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRER--------------------------- 216
           D    +S+     ++ N E    +F  M I E+                           
Sbjct: 190 DLGWPSSLTTEGPQNDNGEGIFRVFGRM-IAEQLVPDSFTFFNLLRFIAGLNSIQLAKIV 248

Query: 217 -----------NLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGK 265
                      +L+   +VL+ Y++L+S L  A ++F+KMPE+D + WN M+    + GK
Sbjct: 249 HCIAIVSKLSGDLLVNTAVLSLYSKLRS-LVDARKLFDKMPEKDRVVWNIMIAAYAREGK 307

Query: 266 MDDAQALFDKMPKRDV-------------------VSWA--------------------N 286
             +   LF  M +  +                   V W                     +
Sbjct: 308 PTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNS 367

Query: 287 MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP 346
           +ID Y +   +D A ++F+ M  + V++ +AM+ GYV+NG S+ AL +F  M+ +  +  
Sbjct: 368 LIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSD-GIQA 426

Query: 347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVF 406
           D   ++ +L A   +G ++    +H Y  K   +       AL+  Y+KCGSIE A ++F
Sbjct: 427 DFVIMINILPAFVHIGALENVKYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLF 486

Query: 407 EQ--IEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL 464
           E+  I+D  +  WN+MI+  A HG     F L   M+  + +PD +TF GLL AC ++GL
Sbjct: 487 EEEKIDDKDLIMWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGL 546

Query: 465 VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
           V++G   F+ M   +  +P  +HY CMV++LGRAG I  A  L+++MP++P+  +W  LL
Sbjct: 547 VEKGKEFFKEMTESYGCQPSQEHYACMVNLLGRAGLISEAGELVKNMPIKPDARVWGPLL 606

Query: 525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKK 584
           SAC+ +    + E  A+ LI M+  N+ +Y+LLSN++A  G W+   ++RS ++ + LKK
Sbjct: 607 SACKMHPGSKLAEFAAEKLINMEPRNAGNYILLSNIYAAAGKWDGVAKMRSFLRNKGLKK 666

Query: 585 LPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           +PGCSW+E+ G V EF V D++  +  DIY +L N+
Sbjct: 667 IPGCSWLEINGHVTEFRVADQTHPRAGDIYTILGNL 702


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 193/612 (31%), Positives = 316/612 (51%), Gaps = 52/612 (8%)

Query: 14  TQSTLL-LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFAR 69
           +QST   + R C  L+      Q+H   + + F  ++ + T  +  ++            
Sbjct: 238 SQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAK---------CE 288

Query: 70  YIFFKYHAFREKKDPFL--WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
            +F  +  F    +P    +NAII  Y+      +AL +F  +  N +  D+ S S  L 
Sbjct: 289 RMFDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALT 348

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           ACS +    EG+Q+HGL  K   G ++ + N ++ +Y +CG L  A  +F++M  RD+VS
Sbjct: 349 ACSVIKRHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVS 408

Query: 188 YNSMIDGYVKSGNIESARELFDSM--PIRERNLISWNSVLN---GYAQLKSGLQFAWQIF 242
           +N++I  + ++  I     LF SM     E +  ++ SV+    G   L  G +   +I 
Sbjct: 409 WNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRII 468

Query: 243 EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
           +     D    ++++    KCG + +A+ +  ++ ++  VSW ++I G++   + + A+R
Sbjct: 469 KSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQR 528

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
            F +M +  ++                                PD+ +   VL   A + 
Sbjct: 529 YFSQMLEMGII--------------------------------PDNYTYATVLDVCANMA 556

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
            I+ G  IH  + K Q   +      L+DMYSKCG+++++  +FE+        W+AMI 
Sbjct: 557 TIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMIC 616

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
             A HGLGE A +L  EM+ L+++P+   F  +L ACAH G V +GL  F+ M   + L+
Sbjct: 617 AYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSHYGLD 676

Query: 483 PELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKH 542
           P+++HY CMVD+LGR+G +  A  LIE MP E +DVIWRTLLS C+   N+ V E     
Sbjct: 677 PQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAEKAFNS 736

Query: 543 LIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
           L+ +D  +SS+YVLL+N++A +GMW +  ++RS+MK   LKK PGCSWIE+   VH F V
Sbjct: 737 LLQLDPQDSSAYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKEPGCSWIEVRDEVHTFLV 796

Query: 603 RDKSRLQVRDIY 614
            DK+  +  +IY
Sbjct: 797 GDKAHPRSEEIY 808



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 147/554 (26%), Positives = 267/554 (48%), Gaps = 64/554 (11%)

Query: 119 KFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD 178
           K + S +L+ CS L  +  G Q+H  +    F   +++ NCL+  Y +   + +A ++FD
Sbjct: 6   KLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFD 65

Query: 179 KMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QF 237
           +M  RD +S+N++I GY   GN+  A+ LFDSMP  ER+++SWNS+L+ Y  L +G+ + 
Sbjct: 66  RMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMP--ERDVVSWNSLLSCY--LHNGVNRK 121

Query: 238 AWQIFEKMPE----RDLISWNSMLHGCVKC---GKMDDAQALFDKMP-KRDVVSWANMID 289
           + +IF +M       D  ++  +L  C      G       L  +M  + DVV+ + ++D
Sbjct: 122 SIEIFVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVD 181

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
            Y+K  ++D A R+F EMP+R++V  +A++ GYV+N   ++ L++F +M  ++ +    +
Sbjct: 182 MYSKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDM-LKVGMGVSQS 240

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           +   V  + A L     G  +H +  K  F+ +   G A +DMY+KC  + +A KVF  +
Sbjct: 241 TYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTL 300

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
            +     +NA+I G A    G  A D+   ++R ++  D+I+ +G L AC+      EG+
Sbjct: 301 PNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGI 360

Query: 470 LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM------------------ 511
               L  +   L   +     ++D+ G+ G +  A  + E+M                  
Sbjct: 361 QLHGLAVKC-GLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQN 419

Query: 512 ----------------PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI----GMDSSNS 551
                            MEP+D  + +++ AC   + LN G  +   +I    G+D    
Sbjct: 420 EEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVG 479

Query: 552 SSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVR 611
           S+ V   +M+   GM  +A ++ + ++E+        SW     ++  F  + +S    R
Sbjct: 480 SALV---DMYGKCGMLMEAEKIHARLEEKTT-----VSW---NSIISGFSSQKQSENAQR 528

Query: 612 DIYYMLDNMWTPDS 625
               ML+    PD+
Sbjct: 529 YFSQMLEMGIIPDN 542



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 145/614 (23%), Positives = 260/614 (42%), Gaps = 115/614 (18%)

Query: 20  LLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSS-------------PCTP 63
           +L+KC   K LN   Q+H +MI TGF+   ++   L+  +  S             P   
Sbjct: 12  ILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRMPQRD 71

Query: 64  LTEFARYIF---------FKYHAFRE--KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLD 112
           +  +   IF         F    F    ++D   WN+++  Y H    ++++ +F  M  
Sbjct: 72  VISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRS 131

Query: 113 NGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF 172
             +  D  + +++LKACS +     GLQ+H L  ++ F +D+   + L+ +Y +C  L+ 
Sbjct: 132 LKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDD 191

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD-----SMPIRERNLISWNSVLNG 227
           A ++F +M  R+ V ++++I GYV++       +LF       M + +    S      G
Sbjct: 192 AFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAG 251

Query: 228 YAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANM 287
            +  K G Q      +     D I   + L    KC +M DA  +F+ +P     S+  +
Sbjct: 252 LSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAI 311

Query: 288 IDGYAK----LGRVDIARRL------FDEMP-----------KR---------------- 310
           I GYA+    L  +DI + L      FDE+            KR                
Sbjct: 312 IVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGL 371

Query: 311 --DVVACNAMMGGYVRNGYSMKALEIFDNMQ-----------------------CELY-- 343
             ++   N ++  Y + G  M+A  IF+ M+                         L+  
Sbjct: 372 GFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVS 431

Query: 344 -----LHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS 398
                + PDD +   V+ A A    ++ G  IH  + K    L+   G AL+DMY KCG 
Sbjct: 432 MLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGM 491

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
           +  A K+  ++E+ +   WN++I+G +     E A     +M  + I PD+ T+  +L+ 
Sbjct: 492 LMEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDV 551

Query: 459 CAHAGLVKEGLLCFELMRRIH------KLEPELQHYGCMVDILGRAGHIEAARNLIEDMP 512
           CA+   +       EL ++IH      +L  ++     +VD+  + G+++ +R + E  P
Sbjct: 552 CANMATI-------ELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAP 604

Query: 513 MEPNDVIWRTLLSA 526
            + + V W  ++ A
Sbjct: 605 -KRDYVTWSAMICA 617


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 209/695 (30%), Positives = 340/695 (48%), Gaps = 97/695 (13%)

Query: 20  LLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           ++R C  L  V    Q+H  ++ +GF ++ ++ T L+  +S +      E AR +F +  
Sbjct: 43  VIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBI---EVARLVFDQLL 99

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
               +K    W  II  Y+       +L +F  M +  V  D++  S VL ACS L  +E
Sbjct: 100 ----EKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLE 155

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G QIH  + +     D+ + N LI  Y +C  ++  R+LFD+M +++ +S+ +MI GY+
Sbjct: 156 GGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYM 215

Query: 197 KSGNIESARELFDSM----------------------------------PIR---ERNLI 219
           ++     A +LF  M                                   I+   E N  
Sbjct: 216 QNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEF 275

Query: 220 SWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR 279
             N +++ YA+  + L  A ++F+ M E+++IS+N+M+ G     K+ +A  LF +M  R
Sbjct: 276 VKNGLIDMYAK-SNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVR 334

Query: 280 ---------------------------------------DVVSWANMIDGYAKLGRVDIA 300
                                                  D+ + + +ID Y+K   V  A
Sbjct: 335 LFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDA 394

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
           R +F+EM ++D+V  NAM  GY ++  + +AL+++  +Q      P++ +   +++A + 
Sbjct: 395 RHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQ-KPNEFTFAALITAASN 453

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
           L  +  G   H  L K           AL+DMY+KCGSIE A K+F       V  WN+M
Sbjct: 454 LASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSM 513

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           I+  A HG  E A  +  EM +  I+P+ +TF  +L+AC+HAG V++GL  F  M     
Sbjct: 514 ISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSMPGF-G 572

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           ++P  +HY C+V +LGR+G +  A+  IE MP+EP  ++WR+LLSACR   N+ +G+  A
Sbjct: 573 IKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAA 632

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
           +  I  D  +S SY+LLSN+FA  GMW D ++VR  M    + K PG SWIE+   V+ F
Sbjct: 633 EMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVF 692

Query: 601 FVRDKSRLQVRDIYYMLDNM--------WTPDSVA 627
             R  +  +   I  +LD +        + PD+ A
Sbjct: 693 IARXTTHREADMIGSVLDILIQHIKGAGYVPDATA 727



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 121/443 (27%), Positives = 215/443 (48%), Gaps = 66/443 (14%)

Query: 101 KEALVMFC-LMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNC 159
           +EAL++F  L   +G   ++F  + V++AC++LG++E+G Q+HG + +  F  D+++   
Sbjct: 18  EEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTS 77

Query: 160 LISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLI 219
           LI  Y + G +E AR +FD++  + +V++ ++I GY K G    + ELF  M  RE N++
Sbjct: 78  LIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQM--RETNVV 135

Query: 220 S----WNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
                 +SVL+  +    L+ G Q    +  +  E D+   N ++    KC ++   + L
Sbjct: 136 PDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKL 195

Query: 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
           FD+M  ++++SW  MI G                               Y++N +  +A+
Sbjct: 196 FDQMVVKNIISWTTMISG-------------------------------YMQNSFDWEAM 224

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY-----LEKDQFSLNGKHGV 387
           ++F  M   L   PD  +   VL++   L  +++G  +H Y     LE ++F  NG    
Sbjct: 225 KLFGEMN-RLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNG---- 279

Query: 388 ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP 447
            LIDMY+K   + +A KVF+ + + +V  +NAMI G +       A +L  EM      P
Sbjct: 280 -LIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPP 338

Query: 448 DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL------EPELQHYGCMVDILGRAGHI 501
             +TF  LL   A        L   EL ++IH L        +L     ++D+  +  ++
Sbjct: 339 SLLTFVSLLGVSA-------SLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYV 391

Query: 502 EAARNLIEDMPMEPNDVIWRTLL 524
           + AR++ E+M  E + V+W  + 
Sbjct: 392 KDARHVFEEMN-EKDIVVWNAMF 413



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 133/292 (45%), Gaps = 36/292 (12%)

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
           GYS +AL +F ++Q +   HP++  L  V+ A  QLG ++KG  +H ++ +  F  +   
Sbjct: 15  GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 74

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
           G +LID YSK G IE A  VF+Q+ + +   W  +I G    G   ++ +L  +M   ++
Sbjct: 75  GTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNV 134

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR 505
            PD    + +L+AC+    ++ G      + R    E ++     ++D   +   ++A R
Sbjct: 135 VPDRYVVSSVLSACSMLEFLEGGKQIHAYVLR-RGTEMDVSVVNVLIDFYTKCNRVKAGR 193

Query: 506 NLIEDMPM---------------------------EPNDVIWR-------TLLSACRNYE 531
            L + M +                           E N + W+       ++L++C + E
Sbjct: 194 KLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLE 253

Query: 532 NLNVGEPVAKHLIGMD-SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
            L  G  V  + I  +  SN      L +M+A   +  DA++V  +M E+N+
Sbjct: 254 ALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNV 305


>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 211/651 (32%), Positives = 324/651 (49%), Gaps = 75/651 (11%)

Query: 20  LLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L  C  L DV    + H   I  G   N ++   L+  ++   C         I     
Sbjct: 143 VLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRC---------IGDAIQ 193

Query: 77  AFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
           AF +  +P    + A++   +      EA  +F LML N + VD  S S VL  CSR G 
Sbjct: 194 AFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGC 253

Query: 135 IEEGL--------------QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
            E GL              Q+H L  K  F SDL L N L+ +Y + G ++ A  +F  M
Sbjct: 254 GEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNM 313

Query: 181 GIRDSVSYNSMIDGY-----------------------------------VKSGNIESAR 205
                VS+N MI GY                                   +KSG+IE+ R
Sbjct: 314 PEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGR 373

Query: 206 ELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM------PERDLISWN-SMLH 258
           ++FD M     +L SWN++L+GY+Q ++  + A ++F +M      P+R  ++   S L 
Sbjct: 374 QMFDGMS--SPSLSSWNTILSGYSQNENHKE-AVKLFREMQFRSVHPDRTTLAIILSSLA 430

Query: 259 GCVKCGKMDDAQALFDKMPKR-DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNA 317
           G +         A+  K   R D+   + +I  Y+K G+V++A+R+FD + + D+V  N+
Sbjct: 431 GMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNS 490

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           MM G   N    +A   F  M+ E  + P   S   VLS  A+L  + +G  +H  + ++
Sbjct: 491 MMAGLSLNSLDKEAFTFFKKMR-EKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIARE 549

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLL 437
            +  +   G ALIDMYSKCG ++ A  VF+ +   +   WN MI+G A +G G+ A  L 
Sbjct: 550 GYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLY 609

Query: 438 MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
            +M     +PD ITF  +L AC+H+GLV  G+  F  M++ H +EP + HY C++D LGR
Sbjct: 610 EDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGR 669

Query: 498 AGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557
           AG +  A  LI+ MP + + +IW  LLS+CR Y ++++    A+ L  +D  NS+ YVLL
Sbjct: 670 AGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLL 729

Query: 558 SNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
           +N+++ LG W+DA+ VR +M    + K PG SWIE +  +  F V D  R+
Sbjct: 730 ANIYSSLGRWDDAKAVRELMSYNQVVKDPGYSWIEHKNGMQAFMVDDNGRM 780



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 143/578 (24%), Positives = 252/578 (43%), Gaps = 97/578 (16%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           IHA M+ +    +T L+ +L+  ++   C  + + +R +F +      K+D + WNAI+ 
Sbjct: 27  IHAHMLRSRLSDDTFLSNRLIEFYAK--CNAI-DASRRLFDQM----PKRDIYTWNAILG 79

Query: 93  TYSHGLDPKEALVMFCLMLD-------------------------------NGVSVDKFS 121
            Y    + ++A V+F  M +                                G     F+
Sbjct: 80  AYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMSREGFVPTHFT 139

Query: 122 ASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
            + VL AC  L  +E G + HG+  K+   +++++ N L+ +Y +C  +  A Q F  + 
Sbjct: 140 LASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVP 199

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRER---NLISWNSVL-----NGYAQLK- 232
             + VS+ +M+ G   S  +  A  LF  M +R R   + +S +SVL      G  +   
Sbjct: 200 EPNEVSFTAMMGGLADSDQVNEAFRLFRLM-LRNRIHVDSVSLSSVLGVCSRGGCGEFGL 258

Query: 233 -----------SGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV 281
                       G Q      +   E DL   NS+L    K G MD A+ +F  MP+  V
Sbjct: 259 HDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSV 318

Query: 282 VSWANMIDGYA-----------------------------------KLGRVDIARRLFDE 306
           VSW  MI GY                                    K G ++  R++FD 
Sbjct: 319 VSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDG 378

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           M    + + N ++ GY +N    +A+++F  MQ    +HPD  +L I+LS++A +  ++ 
Sbjct: 379 MSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFR-SVHPDRTTLAIILSSLAGMMLLEG 437

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G  +H   +K  F  +      LI MYSKCG +E A ++F++I +  +  WN+M+ GL++
Sbjct: 438 GRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSL 497

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           + L + AF    +M    + P   ++  +L+ CA    + +G      + R   +     
Sbjct: 498 NSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFV 557

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
               ++D+  + G ++AAR  + DM +  N V W  ++
Sbjct: 558 G-SALIDMYSKCGDVDAAR-WVFDMMLGKNTVTWNEMI 593



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 128/505 (25%), Positives = 224/505 (44%), Gaps = 49/505 (9%)

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G  IH  + +     D FL N LI  Y +C  ++ +R+LFD+M  RD  ++N+++  Y K
Sbjct: 24  GKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCK 83

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLI----S 252
           +  +E A  LF  MP  ERN++SWN++++  A  ++G  Q A  ++ +M     +    +
Sbjct: 84  ASELEDAHVLFAEMP--ERNIVSWNTLIS--ALTRNGFEQKALGVYYRMSREGFVPTHFT 139

Query: 253 WNSMLHGC-----VKCGKMDDAQALFDKMPKRDVVSWANMIDG-YAKLGRVDIARRLFDE 306
             S+L  C     V+CG+      +  K+   + +   N + G YAK   +  A + F +
Sbjct: 140 LASVLSACGALVDVECGRR--CHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGD 197

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG---- 362
           +P+ + V+  AMMGG   +    +A  +F  +     +H D  SL  VL   ++ G    
Sbjct: 198 VPEPNEVSFTAMMGGLADSDQVNEAFRLF-RLMLRNRIHVDSVSLSSVLGVCSRGGCGEF 256

Query: 363 --HIDKGVAIHRYLEKDQFSLNGKHGV--------ALIDMYSKCGSIENAIKVFEQIEDG 412
             H    V       +    L  KHG         +L+DMY+K G++++A  +F  + + 
Sbjct: 257 GLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEV 316

Query: 413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCF 472
           SV  WN MI G         A + L  M+    EPD+IT+  +L AC  +G ++ G   F
Sbjct: 317 SVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMF 376

Query: 473 ELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM---PMEPNDVIWRTLLSACRN 529
           + M       P L  +  ++    +  + + A  L  +M    + P+      +LS+   
Sbjct: 377 DGMS-----SPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAG 431

Query: 530 YENLNVGEPVAKHLIGMDSSNSSSYVLLS---NMFAGLGMWNDARRVRSMMKERNL---- 582
              L  G  V  H +   +   +   L S    M++  G    A+R+   + E ++    
Sbjct: 432 MMLLEGGRQV--HAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWN 489

Query: 583 KKLPGCSWIELEGVVHEFFVRDKSR 607
             + G S   L+     FF + + +
Sbjct: 490 SMMAGLSLNSLDKEAFTFFKKMREK 514



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 153/321 (47%), Gaps = 22/321 (6%)

Query: 222 NSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV 281
            + ++  A L   L  A  +  ++ +   +S N ++    KC  +D ++ LFD+MPKRD+
Sbjct: 13  QTCIDKKAHLAGKLIHAHMLRSRLSDDTFLS-NRLIEFYAKCNAIDASRRLFDQMPKRDI 71

Query: 282 VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
            +W  ++  Y K   ++ A  LF EMP+R++V+ N ++    RNG+  KAL ++  M  E
Sbjct: 72  YTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMSRE 131

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIEN 401
            ++ P   +L  VLSA   L  ++ G   H    K     N   G AL+ MY+KC  I +
Sbjct: 132 GFV-PTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGD 190

Query: 402 AIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461
           AI+ F  + + +   + AM+ GLA       AF L   M R  I  D ++ + +L  C+ 
Sbjct: 191 AIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSR 250

Query: 462 AGLVKEGL----------------LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR 505
            G  + GL                 C  +    H  E +L     ++D+  + G++++A 
Sbjct: 251 GGCGEFGLHDSNDVLSSDVHGQQVHCLTIK---HGFESDLHLNNSLLDMYAKNGNMDSAE 307

Query: 506 NLIEDMPMEPNDVIWRTLLSA 526
            +  +MP E + V W  +++ 
Sbjct: 308 MIFVNMP-EVSVVSWNVMIAG 327


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 193/604 (31%), Positives = 308/604 (50%), Gaps = 59/604 (9%)

Query: 34  HARMITTGFIKNTHLTTKLV--ASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           H     +GF K   +    V    +S++P    T F +Y+        +K + F WN++I
Sbjct: 74  HTAFQFSGFSKRRSICAGAVLRRRYSNNP-NLTTLFNKYV--------DKTNVFSWNSVI 124

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
              +   D  EAL  F  M    +  ++ +    +K+CS L  +  G Q H       F 
Sbjct: 125 AELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFE 184

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
            DLF+ + L+ +Y +C                               G +  AR LFD  
Sbjct: 185 PDLFVSSALVDMYSKC-------------------------------GELRDARTLFDE- 212

Query: 212 PIRERNLISWNSVLNGYAQ----LKSGLQFAWQIFEKMPER-------DLISWNSMLHGC 260
            I  RN++SW S++ GY Q     ++ L F   + E+           D I+  S+L  C
Sbjct: 213 -ISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSAC 271

Query: 261 VKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
            +  +    + +   + KR    D+     ++D YAK G + ++RR+FD M +RDV++ N
Sbjct: 272 SRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWN 331

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
           +++  Y +NG S +++EIF  M  +  ++ +  +L  VL A A  G    G  IH  + K
Sbjct: 332 SIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIK 391

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
                N   G ++IDMY KCG +E A K F+++ + +V  W+AM+ G  +HG  + A ++
Sbjct: 392 MGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEV 451

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
             EM    ++P+ ITF  +L AC+HAGL++EG   F+ M     +EP ++HYGCMVD+LG
Sbjct: 452 FYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLG 511

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556
           RAG+++ A +LI+ M + P+ V+W  LL ACR ++N+++GE  A+ L  +D  N   YVL
Sbjct: 512 RAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVL 571

Query: 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYM 616
           LSN++A  G W D  R+R +MK   L K PG S ++++G VH F V D+   Q   IY  
Sbjct: 572 LSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEY 631

Query: 617 LDNM 620
           L+ +
Sbjct: 632 LEKL 635


>gi|357463685|ref|XP_003602124.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491172|gb|AES72375.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 187/516 (36%), Positives = 297/516 (57%), Gaps = 12/516 (2%)

Query: 83  DPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +P  W+  I+  S +    K ALV++     +  + D      +LKAC     +     +
Sbjct: 15  NPSNWSHSIRNNSTNQASLKRALVLY-KQTRHDTTHDPTVIPQLLKACDSHPFLPYVKSL 73

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H    K     D+F+   +++ Y +CG +  AR++FD M  R+ V++N+MI GY+++G+ 
Sbjct: 74  HAESIKAGSDVDVFIGTAIVAAYAKCGVVCDARKVFDLMPERNVVTWNAMIGGYLRNGDA 133

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE--RDLISWNSMLHG 259
           +SA   F+ MP + R  +SW+ ++ G+A+    L  A + F+K+P   +D++ W  M+ G
Sbjct: 134 KSALLAFEEMPGKTR--VSWSQMIGGFARNGDTLT-ARKFFDKVPYELKDVVIWTVMVDG 190

Query: 260 CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM 319
             K G+M+DA+ +F+ MP+R+   W++M+ GY K G V  A  +F  +P R++   N+M+
Sbjct: 191 YAKKGEMEDAREVFELMPERNYFVWSSMVCGYCKKGDVMEAEAIFRRIPVRNLEIWNSMI 250

Query: 320 GGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF 379
            GYV+NG   KALE F  M  + +  PD+ ++V VLSA AQLG +D G  +H  +E    
Sbjct: 251 AGYVQNGCGEKALEAFGEMGVDGF-EPDEFTVVSVLSACAQLGDLDAGKQMHHMIECKGI 309

Query: 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLME 439
           ++N      LIDMY+KCG + NA  VFE   + +V  WNAMI G A++G      + L  
Sbjct: 310 AVNQFVLSGLIDMYAKCGDLVNARLVFESCNERNVFCWNAMIAGFAVNGQCNEVLEYLDR 369

Query: 440 MERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG 499
           M+  +I  D +TF  +L+ACAH GL+ E L     M   + +E  ++HYGCMVD+LGRAG
Sbjct: 370 MQESNIRLDAVTFITVLSACAHGGLMSEALEVISKMEE-YGIEMGIRHYGCMVDLLGRAG 428

Query: 500 HIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN--SSSYVLL 557
            ++ A  LI+ MPM+PN+ +   ++ AC  + ++ + E V K +IG DS+   +S  VLL
Sbjct: 429 KLKEAYELIKRMPMKPNETVLGAMIGACWIHSDMKMAEQVMK-MIGADSAACVNSHNVLL 487

Query: 558 SNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
           SN++A    W  A  +RS M +   +K+PG S I L
Sbjct: 488 SNIYAASEKWEKAEMIRSSMVDGGSEKIPGYSSIIL 523



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 78/171 (45%), Gaps = 10/171 (5%)

Query: 16  STLLLLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           + + +L  C  L D++   Q+H  +   G   N  + + L+  ++   C  L   AR +F
Sbjct: 280 TVVSVLSACAQLGDLDAGKQMHHMIECKGIAVNQFVLSGLIDMYAK--CGDLVN-ARLVF 336

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL 132
              +    +++ F WNA+I  ++      E L     M ++ + +D  +   VL AC+  
Sbjct: 337 ESCN----ERNVFCWNAMIAGFAVNGQCNEVLEYLDRMQESNIRLDAVTFITVLSACAHG 392

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183
           GL+ E L++   + +      +    C++ L  R G L+ A +L  +M ++
Sbjct: 393 GLMSEALEVISKMEEYGIEMGIRHYGCMVDLLGRAGKLKEAYELIKRMPMK 443


>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 213/659 (32%), Positives = 326/659 (49%), Gaps = 75/659 (11%)

Query: 12  NSTQSTLLLLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFA 68
           N+  S L     C  L DV    + H   I  G   N ++   L+  ++   C       
Sbjct: 106 NTLISALTRNGACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRC------- 158

Query: 69  RYIFFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVL 126
             I     AF +  +P    + A++   +      EA  +F LML N + VD  S S VL
Sbjct: 159 --IGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVL 216

Query: 127 KACSRLGLIEEGL--------------QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF 172
             CSR G  E GL              Q+H L  K  F SDL L N L+ +Y + G ++ 
Sbjct: 217 GVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDS 276

Query: 173 ARQLFDKMGIRDSVSYNSMIDGY-----------------------------------VK 197
           A  +F  M     VS+N MI GY                                   +K
Sbjct: 277 AEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIK 336

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM------PERDLI 251
           SG+IE+ R++FD M     +L SWN++L+GY+Q ++  + A ++F +M      P+R  +
Sbjct: 337 SGDIEAGRQMFDGMS--SPSLSSWNTILSGYSQNENHKE-AVKLFREMQFRSVHPDRTTL 393

Query: 252 SWN-SMLHGCVKCGKMDDAQALFDKMPKR-DVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
           +   S L G +         A+  K   R D+   + +I  Y+K G+V++A+R+FD + +
Sbjct: 394 AIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAE 453

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
            D+V  N+MM G   N    +A   F  M+ E  + P   S   VLS  A+L  + +G  
Sbjct: 454 LDIVCWNSMMAGLSLNSLDKEAFTFFKKMR-EKGMFPSQFSYATVLSCCAKLSSLSQGRQ 512

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
           +H  + ++ +  +   G ALIDMYSKCG ++ A  VF+ +   +   WN MI+G A +G 
Sbjct: 513 VHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGC 572

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
           G+ A  L  +M     +PD ITF  +L AC+H+GLV  G+  F  M++ H +EP + HY 
Sbjct: 573 GDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYT 632

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549
           C++D LGRAG +  A  LI+ MP + + +IW  LLS+CR Y ++++    A+ L  +D  
Sbjct: 633 CIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQ 692

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
           NS+ YVLL+N+++ LG W+DA+ VR +M    + K PG SWIE +  +  F V D  R+
Sbjct: 693 NSAPYVLLANIYSSLGRWDDAKAVRELMSYNQVVKDPGYSWIEHKNGMQAFMVDDNGRM 751



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 144/549 (26%), Positives = 255/549 (46%), Gaps = 68/549 (12%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           IHA M+ +    +T L+ +L+  ++   C  + + +R +F +      K+D + WNAI+ 
Sbjct: 27  IHAHMLRSRLSDDTFLSNRLIEFYA--KCNAI-DASRRLFDQM----PKRDIYTWNAILG 79

Query: 93  TYSHGLDPKEALVMFCLMLD-NGVSVDKFSASLVLK-ACSRLGLIEEGLQIHGLLRKVAF 150
            Y    + ++A V+F  M + N VS +   ++L    AC  L  +E G + HG+  K+  
Sbjct: 80  AYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGALVDVECGRRCHGISIKIGL 139

Query: 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDS 210
            +++++ N L+ +Y +C  +  A Q F  +   + VS+ +M+ G   S  +  A  LF  
Sbjct: 140 DNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRL 199

Query: 211 MPIRER---NLISWNSVLNGYAQ--------------LKS---GLQFAWQIFEKMPERDL 250
           M +R R   + +S +SVL   ++              L S   G Q      +   E DL
Sbjct: 200 M-LRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDL 258

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYA------------------ 292
              NS+L    K G MD A+ +F  MP+  VVSW  MI GY                   
Sbjct: 259 HLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYH 318

Query: 293 -----------------KLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
                            K G ++  R++FD M    + + N ++ GY +N    +A+++F
Sbjct: 319 GFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLF 378

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
             MQ    +HPD  +L I+LS++A +  ++ G  +H   +K  F  +      LI MYSK
Sbjct: 379 REMQFR-SVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSK 437

Query: 396 CGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGL 455
           CG +E A ++F++I +  +  WN+M+ GL+++ L + AF    +M    + P   ++  +
Sbjct: 438 CGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATV 497

Query: 456 LNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEP 515
           L+ CA    + +G      + R   +         ++D+  + G ++AAR  + DM +  
Sbjct: 498 LSCCAKLSSLSQGRQVHSQIAREGYMNDAFVG-SALIDMYSKCGDVDAAR-WVFDMMLGK 555

Query: 516 NDVIWRTLL 524
           N V W  ++
Sbjct: 556 NTVTWNEMI 564



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 122/493 (24%), Positives = 216/493 (43%), Gaps = 54/493 (10%)

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G  IH  + +     D FL N LI  Y +C  ++ +R+LFD+M  RD  ++N+++  Y K
Sbjct: 24  GKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCK 83

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQ---------LKSGLQFAWQIFEKMPER 248
           +  +E A  LF  MP  ERN++SWN++++   +         ++ G +      +   + 
Sbjct: 84  ASELEDAHVLFAEMP--ERNIVSWNTLISALTRNGACGALVDVECGRRCHGISIKIGLDN 141

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           ++   N++L    KC  + DA   F  +P+ + VS+  M+ G A   +V+ A RLF  M 
Sbjct: 142 NIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLML 201

Query: 309 KR----DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
           +     D V+ ++++G   R G              E  LH  +     VLS+       
Sbjct: 202 RNRIHVDSVSLSSVLGVCSRGGCG------------EFGLHDSND----VLSSDVH---- 241

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
             G  +H    K  F  +     +L+DMY+K G++++A  +F  + + SV  WN MI G 
Sbjct: 242 --GQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGY 299

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
                   A + L  M+    EPD+IT+  +L AC  +G ++ G   F+ M       P 
Sbjct: 300 GQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMS-----SPS 354

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDM---PMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
           L  +  ++    +  + + A  L  +M    + P+      +LS+      L  G  V  
Sbjct: 355 LSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQV-- 412

Query: 542 HLIGMDSSNSSSYVLLS---NMFAGLGMWNDARRVRSMMKERNL----KKLPGCSWIELE 594
           H +   +   +   L S    M++  G    A+R+   + E ++      + G S   L+
Sbjct: 413 HAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLD 472

Query: 595 GVVHEFFVRDKSR 607
                FF + + +
Sbjct: 473 KEAFTFFKKMREK 485



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 143/321 (44%), Gaps = 51/321 (15%)

Query: 222 NSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV 281
            + ++  A L   L  A  +  ++ +   +S N ++    KC  +D ++ LFD+MPKRD+
Sbjct: 13  QTCIDKKAHLAGKLIHAHMLRSRLSDDTFLS-NRLIEFYAKCNAIDASRRLFDQMPKRDI 71

Query: 282 VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
            +W  ++  Y K   ++ A  LF EMP+R++V+ N ++    RNG    A     +++C 
Sbjct: 72  YTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNG----ACGALVDVECG 127

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIEN 401
              H                     G++I   L+ + +      G AL+ MY+KC  I +
Sbjct: 128 RRCH---------------------GISIKIGLDNNIYV-----GNALLGMYAKCRCIGD 161

Query: 402 AIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461
           AI+ F  + + +   + AM+ GLA       AF L   M R  I  D ++ + +L  C+ 
Sbjct: 162 AIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSR 221

Query: 462 AGLVKEGL----------------LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR 505
            G  + GL                 C  +    H  E +L     ++D+  + G++++A 
Sbjct: 222 GGCGEFGLHDSNDVLSSDVHGQQVHCLTIK---HGFESDLHLNNSLLDMYAKNGNMDSAE 278

Query: 506 NLIEDMPMEPNDVIWRTLLSA 526
            +  +MP E + V W  +++ 
Sbjct: 279 MIFVNMP-EVSVVSWNVMIAG 298


>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
          Length = 523

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 179/511 (35%), Positives = 279/511 (54%), Gaps = 74/511 (14%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG----VSVDKFSASLVLKACSRLGLIE 136
           + D F++N +I+  +H   P++A+ ++  ML  G    V  DK +   VL+AC+ +G  +
Sbjct: 40  RPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGD 99

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G+Q+H  + K    SD F++                               N++I  + 
Sbjct: 100 TGVQVHAHVVKAGCESDAFVK-------------------------------NALIGMHA 128

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
             GN+  A  LFD    R R                                D ++W++M
Sbjct: 129 SCGNLGIAAALFDG---RARE-------------------------------DAVAWSAM 154

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
           + GC + G +  A+ LFD+ P +D+VSW  MI  YAK G + +AR LFD++P+RDVV+ N
Sbjct: 155 ITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWN 214

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
            M+ GYVR G  + ALE+F+ MQ  +   PD  +++ +LSA A  G +D G  +H  L  
Sbjct: 215 VMISGYVRCGSHLHALELFEQMQ-RMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLS- 272

Query: 377 DQFSLNGKH---GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
           D FS NG     G ALIDMY+KCGS+++A +VF  + D  V  WN+++ GLA+HG    +
Sbjct: 273 DMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLES 332

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493
            D+  +M +  + PD+ITF  +L AC+H G+V +G   F LM+  +++EP ++HYGC+VD
Sbjct: 333 IDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCIVD 392

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS 553
           +LGRAG ++ A   I+ M  EPN VIWRTLLSACR +  + + +   + L+   +  S  
Sbjct: 393 MLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDESGD 452

Query: 554 YVLLSNMFAGLGMWNDARRVRSMMKERNLKK 584
           YVLLSN++A +G W  + ++R +M +  + K
Sbjct: 453 YVLLSNIYASVGEWFGSEKMRKLMDDSGVNK 483


>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 670

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 198/673 (29%), Positives = 343/673 (50%), Gaps = 86/673 (12%)

Query: 1   MFVSANYNQPCNSTQSTLLL-LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSS 59
           ++   N      + + +LL  L  C +  ++ ++H R++      +  +  +LV   +S 
Sbjct: 4   LYFRPNTTSRARACRDSLLAHLDACASRANLAELHGRLVRAHLGSDPCVAGRLVTLLASP 63

Query: 60  PCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDK 119
                  +AR +F +      +    +WN +I+ Y+    P +AL +F  M  +GVS D 
Sbjct: 64  VSRHDMPYARKVFDRM----AQPTAIVWNCMIRGYNSCHAPMDALELFRAMRRSGVSPDN 119

Query: 120 FSASLVLKACSRLGLIE---EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQL 176
           ++ + V ++ +     +    G  +H L++++ F SDLF+ + LI+ Y     +E AR++
Sbjct: 120 YTMAAVAQSSAAFASWKGRATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKV 179

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKS- 233
           F++M  RD VS+  MI  + + G  ++     D M     + N I+  S+L+   Q+++ 
Sbjct: 180 FEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAV 239

Query: 234 -------------GLQF--------------------AWQIFEKMPERDLISWNSMLHGC 260
                        G++                     AW+ F+ MP R+  SWN+++ G 
Sbjct: 240 DKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGF 299

Query: 261 VKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRL------------- 303
           V+ GK  +A  +F++M       DV++  +++  YA+LG +   R L             
Sbjct: 300 VQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIKDHEIHCDI 359

Query: 304 ----------------------FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
                                 F+ M +RD+V+  AM+ GYV+      A  +FD+M+  
Sbjct: 360 ILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKVR 419

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIEN 401
             +   + +LV +LSA +QLG +DKG  IH Y+++     +     AL+DMY+KCG I+ 
Sbjct: 420 DVM-ASEMALVSLLSACSQLGALDKGREIHSYIKEKSVRTDMWLESALVDMYAKCGCIDA 478

Query: 402 AIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL-SIEPDDITFTGLLNACA 460
           A ++F ++       WNAMI GLA  G G+ A  L  ++ +L   +PD IT   +L AC 
Sbjct: 479 AAEIFSRMRHKQTLAWNAMIGGLASQGQGKEAVALFEQLLKLRDPKPDAITLKVVLCACT 538

Query: 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIW 520
           H G+V EGL  F LM  +  + P+ +HYGC+VD+LGRAG ++ A N I+ MP++PN VIW
Sbjct: 539 HVGMVDEGLHYFNLMLTL-GIVPDNEHYGCIVDLLGRAGLLDEAYNFIQKMPIQPNPVIW 597

Query: 521 RTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580
            +LL+ACR +  + +G+ + +H+I +  ++  ++VL+SN+ A  G W+D  +VR MM  R
Sbjct: 598 GSLLAACRVHHRMELGKIIGQHIIDLAPNDVGAHVLISNLHAEEGQWDDVEQVRGMMGSR 657

Query: 581 NLKKLPGCSWIEL 593
            ++K PG S I++
Sbjct: 658 RVEKSPGHSSIQV 670


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 193/649 (29%), Positives = 321/649 (49%), Gaps = 104/649 (16%)

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
           YH     KD F WN++I   +   +P+ AL  F  M  + V  + F+   +LKAC+ L  
Sbjct: 9   YHCSISHKDTFHWNSLIAKNA-TQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRR 67

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM--GIRDSVSYNSMI 192
           +   LQ+H  L ++   +D F    L+  Y +CG+  +A Q+FD+M  G  D VS+ ++I
Sbjct: 68  LLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALI 127

Query: 193 DGYVKSGNIESARELFDSMP---------------IRERNLISWNSVLNGYAQLKSG--- 234
             Y  +G ++ A + F  M                +    L+S  +V  G   L+ G   
Sbjct: 128 SAYSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAV 187

Query: 235 ----------------------------LQFAWQIFEKMP--ERDLISWNSMLHGCVKCG 264
                                       +  AW++F  +P  +RD++SWNS++ G    G
Sbjct: 188 HGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNG 247

Query: 265 KMDDAQALFDKM---------PKR------------------------------------ 279
           + + A   F+ M         P R                                    
Sbjct: 248 EAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVA 307

Query: 280 -DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM 338
            DVV    ++D +A+ G + +AR +FD +  ++VV  +AM+ GY +     +AL +F  M
Sbjct: 308 KDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQM 367

Query: 339 QCE-----LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMY 393
             E     + + P+  +LV V++A ++LG       IH+Y        + +   ALIDM 
Sbjct: 368 LMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMC 427

Query: 394 SKCGSIENAIKVFEQIEDG--SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDIT 451
           +KCG IE+  +VF ++++   +V  W++MI    IHG G+ A +L  EM     EP++IT
Sbjct: 428 AKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEIT 487

Query: 452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM 511
           +  +L+AC+HAGLV++G  CF  M + + + P  +HY C+VD+LGRAGH++ A N+I +M
Sbjct: 488 YISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNM 547

Query: 512 PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDAR 571
           P++ +  +W +LL+AC  + N  +GE V K ++ +DS++   +VLL+NM+   G W+D  
Sbjct: 548 PIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVV 607

Query: 572 RVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           R+R  ++   L+K+PG S+IE+   V+ F   D+S  +   IY  LD +
Sbjct: 608 RMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGL 656



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 8/156 (5%)

Query: 30  VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNA 89
            + IH   + TG  ++  + + L+     + C  + E  R +F +       +    W++
Sbjct: 401 ASMIHKYAVATGLDQDARIASALIDM--CAKCGDI-EHGRQVFSEMD--ESTRTVVSWSS 455

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA 149
           +I       + K AL +F  M   G   ++ +   VL ACS  GL+E+G      + K  
Sbjct: 456 MIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEK-D 514

Query: 150 FGSDLFLQN--CLISLYVRCGYLEFARQLFDKMGIR 183
           +G     ++  CL+ L  R G+L+ A  +   M I+
Sbjct: 515 YGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIK 550


>gi|218194084|gb|EEC76511.1| hypothetical protein OsI_14286 [Oryza sativa Indica Group]
          Length = 656

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 183/567 (32%), Positives = 294/567 (51%), Gaps = 31/567 (5%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +K+   W +++   +    P+ AL MF  M+++GV+ + F+ +  L AC+ LG +  G Q
Sbjct: 76  RKNVVAWTSVMSGCTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQ 135

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H L  +  F  D ++ +CLI +Y RCG L  A+++FD+M   D V Y S+I  + ++G 
Sbjct: 136 VHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGE 195

Query: 201 IESARE-----LFDSMPIRERNLIS--------WNSVLNGYAQLKSGLQFAWQIFEKMPE 247
            E A E     L   +   E  + +            ++GY   K GL+ +  ++     
Sbjct: 196 FELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLR-SQSVYSSTAL 254

Query: 248 RDLISWN----------SMLHGCVKCGKMDDAQALFDKMPKRDVVS----WANMIDGYAK 293
            D  S N          S++ G   CG +   + L     K D+++       ++  Y +
Sbjct: 255 IDFYSRNEGVDPNEFALSIVLG--ACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGR 312

Query: 294 LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI 353
            G V+    + +++   D+V+    +    +NG+  KA+ +   M  E +  P+  +   
Sbjct: 313 TGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFT-PNGYAFSS 371

Query: 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
           VLS+ A +  +D+G+  H    K         G ALI+MYSKCG + +A   F+ +    
Sbjct: 372 VLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHD 431

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE 473
           V  WN++I+G A HG    A ++  +M    I+PDD TF G+L  C H+G+V+EG L F 
Sbjct: 432 VTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFR 491

Query: 474 LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENL 533
           LM   +   P   HY CM+D+LGR G  + A  +I DMP EP+ +IW+TLL++C+ + NL
Sbjct: 492 LMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNL 551

Query: 534 NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
           ++G+  A  L+ +   +S+SYVL+SN++A  G W DAR+VR  M E  +KK  GCSWIE+
Sbjct: 552 DIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEI 611

Query: 594 EGVVHEFFVRDKSRLQVRDIYYMLDNM 620
              VH F  RD S      IY ML  +
Sbjct: 612 NNEVHTFASRDMSHPNSDSIYQMLGEL 638



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 101/180 (56%), Gaps = 1/180 (0%)

Query: 280 DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQ 339
           DVV     ++   K GR+  A  LFD MP+++VVA  ++M G  RNG    AL +F +M 
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGCTRNGRPEAALAMFADM- 105

Query: 340 CELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSI 399
            E  + P+D +    L A A LG +  G  +H    +  F+ +   G  LI+MYS+CGS+
Sbjct: 106 VESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSL 165

Query: 400 ENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
             A +VF++++   V  + ++I+    +G  ELA + L++M +  ++P++ T T +L AC
Sbjct: 166 PAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC 225



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 128/296 (43%), Gaps = 44/296 (14%)

Query: 19  LLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAF 78
           ++L  C ++    Q+H   I    I +  ++  L++ +     T L E    +  K    
Sbjct: 273 IVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGR---TGLVEELEAMLNKI--- 326

Query: 79  REKKDPFLWN-AIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
            E  D   W  AI   + +G   K A+ + C M   G + + ++ S VL +C+ +  +++
Sbjct: 327 -ENPDLVSWTTAISANFQNGFGEK-AIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQ 384

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G+Q H L  K+   S++   N LI++Y +CG +  AR  FD M   D  S+NS+I G+ +
Sbjct: 385 GMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQ 444

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
            G+   A E+F  M  R   +   +S   G                            +L
Sbjct: 445 HGDANKALEVFSKM--RSNGIKPDDSTFLG----------------------------VL 474

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVVS-----WANMIDGYAKLGRVDIARRLFDEMP 308
            GC   G +++ +  F  M  +   +     +A MID   + GR D A R+ ++MP
Sbjct: 475 MGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMP 530



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 166/390 (42%), Gaps = 70/390 (17%)

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----I 251
           VKSG +  A +LFD MP   +N+++W SV++G  +     + A  +F  M E  +     
Sbjct: 59  VKSGRLADALDLFDRMP--RKNVVAWTSVMSGCTR-NGRPEAALAMFADMVESGVAPNDF 115

Query: 252 SWNSMLHGCV-----------------------------------KCGKMDDAQALFDKM 276
           + N+ L  C                                    +CG +  A+ +FD+M
Sbjct: 116 ACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRM 175

Query: 277 PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD-----------VVACNAMMG----G 321
              DVV + ++I  + + G  ++A     +M K+            + AC  ++G    G
Sbjct: 176 DSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHG 235

Query: 322 YVRNGYSMKALEIFDNMQ-CELY-----LHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           Y+     +++  ++ +    + Y     + P++ +L IVL A    G I  G  +H    
Sbjct: 236 YLIKKIGLRSQSVYSSTALIDFYSRNEGVDPNEFALSIVLGAC---GSIGLGRQLHCSAI 292

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           K     + +   AL+ MY + G +E    +  +IE+  +  W   I+    +G GE A  
Sbjct: 293 KHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIA 352

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           LL +M      P+   F+ +L++CA    + +G+  F  +      + E+     ++++ 
Sbjct: 353 LLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQ-FHCLALKLGCDSEICTGNALINMY 411

Query: 496 GRAGHIEAARNLIEDMPMEPNDVI-WRTLL 524
            + G + +AR L  D+ M  +DV  W +L+
Sbjct: 412 SKCGQMGSAR-LAFDV-MHTHDVTSWNSLI 439



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 15/144 (10%)

Query: 395 KCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTG 454
           K G + +A+ +F+++   +V  W ++++G   +G  E A  +  +M    + P+D     
Sbjct: 60  KSGRLADALDLFDRMPRKNVVAWTSVMSGCTRNGRPEAALAMFADMVESGVAPNDFACNA 119

Query: 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG------CMVDILGRAGHIEAARNLI 508
            L ACA  G ++ G        ++H L       G      C++++  R G + AA+ + 
Sbjct: 120 ALVACADLGALRAG-------EQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVF 172

Query: 509 EDMPMEPNDVIWRTLLSA-CRNYE 531
           + M   P+ V + +L+SA CRN E
Sbjct: 173 DRMD-SPDVVGYTSLISAFCRNGE 195


>gi|297812081|ref|XP_002873924.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319761|gb|EFH50183.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 939

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 188/539 (34%), Positives = 303/539 (56%), Gaps = 45/539 (8%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           +  +IK Y+      EA+ +F  M + G+ +++ + + V+ ACS LG I +   +H L  
Sbjct: 395 YTTLIKGYAQNNQWSEAMELFREMRNLGIMLNEVTLATVISACSHLGGIWDCKMLHSLAI 454

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           K+     +F    L+ +Y  C  L+ AR+LFD+M  R+ V++N M++GY K+G IE A+E
Sbjct: 455 KLNLDDRVFASTNLLLMYCICSCLKDARKLFDEMPERNLVTWNVMLNGYSKAGLIEQAKE 514

Query: 207 LFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER----------DLISWNS- 255
           LFD   I E++++SW ++++G  + K+ L  A   + +M  R          DL+S ++ 
Sbjct: 515 LFDQ--ITEKDIVSWGTMIDGCLR-KNQLDEALVYYTEMLRRGMKPSEVMMVDLLSASAR 571

Query: 256 --------MLHGC-VKCG-------------------KMDDAQALFDKMPKRDVVSWANM 287
                    LHG  VK G                    +  A   F+   K  + S   +
Sbjct: 572 SVGSSKGLQLHGTIVKMGFDCYDFLQATIIHFYAVSNNLKLALQQFEVSVKDHIASRNAL 631

Query: 288 IDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD 347
           I G+ K G V+ AR +FD+   +D+ + NAMM GY ++     AL +F  M     + PD
Sbjct: 632 IAGFVKNGMVEQAREVFDQTRDKDIFSWNAMMSGYAQSLSPQLALHLFREMISSSQVKPD 691

Query: 348 DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFE 407
             ++V V SAI+ LG +++G   H YL +     N     A+I+MY+KCGSIE A+ +F 
Sbjct: 692 AITMVSVFSAISSLGSLEEGKRAHEYLNRSSIPPNDNLIAAIINMYAKCGSIETALNIFH 751

Query: 408 QIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL 464
           Q ++    ++  WNA+I G A HG  +LA DL  +++ L I+P+ ITF G+L+AC HAGL
Sbjct: 752 QTKNIFSSTISPWNAIICGSATHGHAKLALDLYSDLQSLPIKPNSITFVGVLSACCHAGL 811

Query: 465 VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
           V+ G   FE M+  H +EP+++HYGCMVD+LG++G +E A+ +I++MP++ + +IW  LL
Sbjct: 812 VELGKTYFESMKSDHGIEPDIKHYGCMVDLLGKSGKLEEAKEMIKNMPVKADVMIWGMLL 871

Query: 525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583
           SA R + N+ + E  A  L  +D S+    V+LSN++A  G W D   VR +M+ R+++
Sbjct: 872 SASRIHGNVEIAELAAAELAAIDPSHGGCKVMLSNVYADAGRWEDVALVREVMRTRDVE 930



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 133/512 (25%), Positives = 228/512 (44%), Gaps = 115/512 (22%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
            L +C+    +  G QIHG + K    S+ F+ N ++++Y +C  L  A  +F      D
Sbjct: 301 ALGSCASSNDVTCGRQIHGRVLKSGHDSNGFICNSVLNMYAKCRLLVDAESVFRAHAKLD 360

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244
           S S+N M+DGY +S  +  A +LFD MP  ER+ +S+ +++ GYAQ  +    A ++F +
Sbjct: 361 SASFNIMVDGYARSRRLGDALKLFDVMP--ERSCVSYTTLIKGYAQ-NNQWSEAMELFRE 417

Query: 245 M----------------------------------------PERDLISWNSMLHGCVKCG 264
           M                                         +R   S N +L  C+ C 
Sbjct: 418 MRNLGIMLNEVTLATVISACSHLGGIWDCKMLHSLAIKLNLDDRVFASTNLLLMYCI-CS 476

Query: 265 KMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVR 324
            + DA+ LFD+MP+R++V+W  M++GY+K G ++ A+ LFD++ ++D+V+   M+ G +R
Sbjct: 477 CLKDARKLFDEMPERNLVTWNVMLNGYSKAGLIEQAKELFDQITEKDIVSWGTMIDGCLR 536

Query: 325 NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK-------- 376
                +AL  +  M     + P +  +V +LSA A+     KG+ +H  + K        
Sbjct: 537 KNQLDEALVYYTEM-LRRGMKPSEVMMVDLLSASARSVGSSKGLQLHGTIVKMGFDCYDF 595

Query: 377 -------------------DQFSLNGKHGV----ALIDMYSKCGSIENAIKVFEQIEDGS 413
                               QF ++ K  +    ALI  + K G +E A +VF+Q  D  
Sbjct: 596 LQATIIHFYAVSNNLKLALQQFEVSVKDHIASRNALIAGFVKNGMVEQAREVFDQTRDKD 655

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLS-IEPDDITFTGLLNACAHAGLVKEGLLCF 472
           +  WNAM++G A     +LA  L  EM   S ++PD IT   + +A +  G ++EG    
Sbjct: 656 IFSWNAMMSGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISSLGSLEEGKRAH 715

Query: 473 ELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNL------------------------- 507
           E + R   + P       ++++  + G IE A N+                         
Sbjct: 716 EYLNR-SSIPPNDNLIAAIINMYAKCGSIETALNIFHQTKNIFSSTISPWNAIICGSATH 774

Query: 508 ------------IEDMPMEPNDVIWRTLLSAC 527
                       ++ +P++PN + +  +LSAC
Sbjct: 775 GHAKLALDLYSDLQSLPIKPNSITFVGVLSAC 806



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 134/264 (50%), Gaps = 6/264 (2%)

Query: 215 ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFD 274
           ER L+S          +  G Q   ++ +   + +    NS+L+   KC  + DA+++F 
Sbjct: 295 ERALVSALGSCASSNDVTCGRQIHGRVLKSGHDSNGFICNSVLNMYAKCRLLVDAESVFR 354

Query: 275 KMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEI 334
              K D  S+  M+DGYA+  R+  A +LFD MP+R  V+   ++ GY +N    +A+E+
Sbjct: 355 AHAKLDSASFNIMVDGYARSRRLGDALKLFDVMPERSCVSYTTLIKGYAQNNQWSEAMEL 414

Query: 335 FDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYS 394
           F  M+  L +  ++ +L  V+SA + LG I     +H    K            L+ MY 
Sbjct: 415 FREMR-NLGIMLNEVTLATVISACSHLGGIWDCKMLHSLAIKLNLDDRVFASTNLLLMYC 473

Query: 395 KCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTG 454
            C  +++A K+F+++ + ++  WN M+NG +  GL E A +L  ++     E D +++  
Sbjct: 474 ICSCLKDARKLFDEMPERNLVTWNVMLNGYSKAGLIEQAKELFDQI----TEKDIVSWGT 529

Query: 455 LLNACAHAGLVKEGLLCF-ELMRR 477
           +++ C     + E L+ + E++RR
Sbjct: 530 MIDGCLRKNQLDEALVYYTEMLRR 553



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 122/248 (49%), Gaps = 21/248 (8%)

Query: 64  LTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG-VSVDKFSA 122
           + E AR +F +       KD F WNA++  Y+  L P+ AL +F  M+ +  V  D  + 
Sbjct: 640 MVEQAREVFDQ----TRDKDIFSWNAMMSGYAQSLSPQLALHLFREMISSSQVKPDAITM 695

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG- 181
             V  A S LG +EEG + H  L + +   +  L   +I++Y +CG +E A  +F +   
Sbjct: 696 VSVFSAISSLGSLEEGKRAHEYLNRSSIPPNDNLIAAIINMYAKCGSIETALNIFHQTKN 755

Query: 182 -IRDSVS-YNSMIDGYVKSGNIESARELF---DSMPIRERNLISWNSVLNGYAQLKSGL- 235
               ++S +N++I G    G+ + A +L+    S+PI+  N I++  VL+  A   +GL 
Sbjct: 756 IFSSTISPWNAIICGSATHGHAKLALDLYSDLQSLPIKP-NSITFVGVLS--ACCHAGLV 812

Query: 236 QFAWQIFEKMPERDLISWNSMLHGCV-----KCGKMDDAQALFDKMP-KRDVVSWANMID 289
           +     FE M     I  +   +GC+     K GK+++A+ +   MP K DV+ W  ++ 
Sbjct: 813 ELGKTYFESMKSDHGIEPDIKHYGCMVDLLGKSGKLEEAKEMIKNMPVKADVMIWGMLLS 872

Query: 290 GYAKLGRV 297
                G V
Sbjct: 873 ASRIHGNV 880


>gi|2245038|emb|CAB10457.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268435|emb|CAB80955.1| hypothetical protein [Arabidopsis thaliana]
          Length = 851

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 182/502 (36%), Positives = 275/502 (54%), Gaps = 41/502 (8%)

Query: 120 FSASLVLKACSRLGLIEEGLQI-HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD 178
           F  + ++  C R G I+  L++ HG+  K    + +   + LI +      +  A QLFD
Sbjct: 62  FPLNKIIARCVRSGDIDGALRVFHGMRAK----NTITWNSLLIGISKDPSRMMEAHQLFD 117

Query: 179 KMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFA 238
           ++   D+ SYN M+  YV++ N E A+  FD MP ++    SWN+++ GYA+ +  ++ A
Sbjct: 118 EIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKD--AASWNTMITGYAR-RGEMEKA 174

Query: 239 WQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVD 298
            ++F  M E++ +SWN+M+ G ++CG ++ A   F   P R VV+W  MI GY K  +V+
Sbjct: 175 RELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVE 234

Query: 299 IARRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
           +A  +F +M   +++V  NAM+ GYV N      L++F  M  E  + P+ + L      
Sbjct: 235 LAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAM-LEEGIRPNSSGL------ 287

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
                                 +L G    +LI MY KCG + +A K+FE ++   V  W
Sbjct: 288 --------------------SSALLGCTLTSLISMYCKCGELGDAWKLFEVMKKKDVVAW 327

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
           NAMI+G A HG  + A  L  EM    I PD ITF  +L AC HAGLV  G+  FE M R
Sbjct: 328 NAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVR 387

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
            +K+EP+  HY CMVD+LGRAG +E A  LI  MP  P+  ++ TLL ACR ++N+ + E
Sbjct: 388 DYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAE 447

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL-----KKLPGCSWIE 592
             A+ L+ ++S N++ YV L+N++A    W D  RVR  MKE N+      K+PG SWIE
Sbjct: 448 FAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVERVKVPGYSWIE 507

Query: 593 LEGVVHEFFVRDKSRLQVRDIY 614
           +   VH F   D+   ++  I+
Sbjct: 508 IRNKVHHFRSSDRIHPELDSIH 529



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 96/250 (38%), Gaps = 65/250 (26%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           K+   WNA+I  Y     P++ L +F  ML+ G+  +    S  L  C+           
Sbjct: 247 KNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCT----------- 295

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
                             LIS+Y +CG L  A +LF+ M  +D V++N+MI GY + GN 
Sbjct: 296 ---------------LTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNA 340

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
           + A  LF  M                               +     D I++ ++L  C 
Sbjct: 341 DKALCLFREM------------------------------IDNKIRPDWITFVAVLLACN 370

Query: 262 KCGKMDDAQALFDKM-------PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
             G ++   A F+ M       P+ D   +  M+D   + G+++ A +L   MP R   A
Sbjct: 371 HAGLVNIGMAYFESMVRDYKVEPQPD--HYTCMVDLLGRAGKLEEALKLIRSMPFRPHAA 428

Query: 315 CNAMMGGYVR 324
               + G  R
Sbjct: 429 VFGTLLGACR 438



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 4/175 (2%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           +KKD   WNA+I  Y+   +  +AL +F  M+DN +  D  +   VL AC+  GL+  G+
Sbjct: 320 KKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGM 379

Query: 140 Q-IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS-YNSMIDGYVK 197
                ++R            C++ L  R G LE A +L   M  R   + + +++     
Sbjct: 380 AYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRV 439

Query: 198 SGNIESARELFDS-MPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI 251
             N+E A    +  + +  +N   +  + N YA  K+  +   ++ ++M E +++
Sbjct: 440 HKNVELAEFAAEKLLQLNSQNAAGYVQLANIYAS-KNRWEDVARVRKRMKESNVV 493


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 199/680 (29%), Positives = 338/680 (49%), Gaps = 84/680 (12%)

Query: 20  LLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASF--SSSPCTPLTEFARYIFFK 74
           LL+ C+T  +      IHAR +  G + + +L   L++ +  ++     L + AR +F +
Sbjct: 32  LLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRD-ARRLFDE 90

Query: 75  YHAFREKKDPFLWNAIIKTYSH---------------------------GLDPK----EA 103
               R  ++ F WN+++  ++                            GL+      EA
Sbjct: 91  IPLAR--RNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEA 148

Query: 104 LVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISL 163
           +     M  +G +  +F+ + VL +C+       G ++H  + K+  GS + + N ++++
Sbjct: 149 IKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNM 208

Query: 164 YVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNS 223
           Y +CG  E A  +F++M +R   S+N+M+      G ++ A  LF+SMP   R+++SWN+
Sbjct: 209 YGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMP--GRSIVSWNA 266

Query: 224 VLNGYAQ----LKSGLQFAWQIFEKMPERDLISWNSMLHGCV------------------ 261
           ++ GY Q     K+   F+  + E     D  +  S+L  C                   
Sbjct: 267 MIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRT 326

Query: 262 -----------------KCGKMDDAQALFDKMPKRD--VVSWANMIDGYAKLGRVDIARR 302
                            K G +++A+ + D+  + D  V+S+  +++GY K+G ++ AR 
Sbjct: 327 EMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESARE 386

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           +F  M  RDVVA  AM+ GY +NG + +A+++F +M       P+  +L  VLS  A L 
Sbjct: 387 MFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSM-ITCGPEPNSYTLAAVLSVCASLA 445

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI-EDGSVDHWNAMI 421
            +D G  IH    +     +     A+I MY++ GS   A ++F+Q+        W +MI
Sbjct: 446 CLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMI 505

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
             LA HG GE A  L  EM R  +EPD IT+ G+L+AC+HAG V EG   ++ ++  H++
Sbjct: 506 VALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQI 565

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
            PE+ HY CMVD+L RAG    A+  I  MP+EP+ + W +LLSACR ++N  + E  A+
Sbjct: 566 APEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAE 625

Query: 542 HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
            L+ +D +NS +Y  ++N+++  G W+DA R+    KE+ ++K  G SW  +   +H F 
Sbjct: 626 KLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFG 685

Query: 602 VRDKSRLQVRDIYYMLDNMW 621
             D    Q   +Y M   MW
Sbjct: 686 ADDVVHPQRDAVYAMAARMW 705


>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
 gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
          Length = 546

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 194/540 (35%), Positives = 298/540 (55%), Gaps = 45/540 (8%)

Query: 113 NGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLI--SLYVRCGYL 170
           N  S ++   S + K C+ L  ++   QIH  L    F S+      LI        G +
Sbjct: 7   NDRSTNRKQPSSLWKNCNNLLALK---QIHATLIIKGFNSNRAALRELIFAGAMTISGAI 63

Query: 171 EFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGY 228
            +A Q+F ++   D   +N+M+ G  +S N      L+  M  R  + +  +++ +L G 
Sbjct: 64  NYAHQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFLLKGC 123

Query: 229 AQL---KSG-------------------------------LQFAWQIFEKMPERDLISWN 254
            +L   K+G                               L  A  IF  +PER ++SW+
Sbjct: 124 TRLEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLPERSVVSWS 183

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
           ++  G  + G++  A+ +FD+MP +D+VSW  MI GY K G ++ AR LFDE P++DVV 
Sbjct: 184 ALTAGYARRGELGVARQIFDEMPVKDLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVT 243

Query: 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
            N M+ GYV  G   +ALE+F+ M+  +   PD+ +++ +LSA A LG +  G  +H  +
Sbjct: 244 WNTMIAGYVLRGEQRQALEMFEEMR-NVGECPDEVTMLSLLSACADLGDLQVGRKLHCSI 302

Query: 375 -EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
            E  +  L+   G AL+DMY+KCGSIE A++VF+++ +  V  WN++I GLA HG  E +
Sbjct: 303 SEMTRGDLSVLLGNALVDMYAKCGSIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAEES 362

Query: 434 FDLLMEMERL-SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV 492
             L  EM+ L +I+P++ITF G++ AC+HAG V+EG   F+LMR  + +EP + H+GCMV
Sbjct: 363 IKLFAEMQALKNIKPNEITFVGVIVACSHAGNVEEGRRYFKLMRERYDIEPNMIHHGCMV 422

Query: 493 DILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552
           D+LGRAG +  A  LI  M +EPN +IWRTLL ACR + N+ +G    + L+ +    S 
Sbjct: 423 DLLGRAGLLSEAFELIAKMEIEPNAIIWRTLLGACRVHGNVELGRLANERLLKLRRDESG 482

Query: 553 SYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG-VVHEFFVRDKSRLQVR 611
            YVLLSN++A  G W+ A  VR +M +  ++K  G S IE +   V +F    K +L  R
Sbjct: 483 DYVLLSNIYASAGEWDGAEEVRKLMDDGGVRKEAGRSLIEADDRAVMQFLFDPKPKLNSR 542



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 149/553 (26%), Positives = 268/553 (48%), Gaps = 99/553 (17%)

Query: 4   SANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTP 63
           S N  QP +       L + C  L  + QIHA +I  GF  N     +L+ + + +    
Sbjct: 10  STNRKQPSS-------LWKNCNNLLALKQIHATLIIKGFNSNRAALRELIFAGAMT---- 58

Query: 64  LTEFARYIFFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFS 121
               +  I + +  F +  +P  F+WN +++  S   +P + ++++  M + GV  DKF+
Sbjct: 59  ---ISGAINYAHQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFT 115

Query: 122 ASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
            S +LK C+RL   + G  +HG + K  F  + F++N LI  +  CG L  AR +F  + 
Sbjct: 116 FSFLLKGCTRLEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLP 175

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQ 240
            R  VS++++  GY + G +  AR++FD MP+++  L+SWN ++ GY  +K+G ++ A  
Sbjct: 176 ERSVVSWSALTAGYARRGELGVARQIFDEMPVKD--LVSWNVMITGY--VKNGEMENART 231

Query: 241 IFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM------PKR--------------- 279
           +F++ PE+D+++WN+M+ G V  G+   A  +F++M      P                 
Sbjct: 232 LFDEAPEKDVVTWNTMIAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGD 291

Query: 280 -------------------DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
                               V+    ++D YAK G ++IA ++F +M ++DV   N+++G
Sbjct: 292 LQVGRKLHCSISEMTRGDLSVLLGNALVDMYAKCGSIEIALQVFKKMREKDVTTWNSVIG 351

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
           G   +G++ +++++F  MQ    + P++ + V V+ A +  G++++G    RY     F 
Sbjct: 352 GLAFHGHAEESIKLFAEMQALKNIKPNEITFVGVIVACSHAGNVEEG---RRY-----FK 403

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
           L                     ++    IE   + H   M++ L   GL   AF+L+ +M
Sbjct: 404 L---------------------MRERYDIEPNMIHH-GCMVDLLGRAGLLSEAFELIAKM 441

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500
           E   IEP+ I +  LL AC   G V+ G L  E + ++ +   E   Y  + +I   AG 
Sbjct: 442 E---IEPNAIIWRTLLGACRVHGNVELGRLANERLLKLRR--DESGDYVLLSNIYASAGE 496

Query: 501 IEAA---RNLIED 510
            + A   R L++D
Sbjct: 497 WDGAEEVRKLMDD 509


>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Vitis vinifera]
          Length = 625

 Score =  309 bits (791), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 205/616 (33%), Positives = 321/616 (52%), Gaps = 64/616 (10%)

Query: 25  KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDP 84
           K+L    Q H+R+++ G  +N+ L TKL+  F+ + C      +R +F       + K+ 
Sbjct: 37  KSLKLTRQSHSRILSLGLSQNSLLATKLI--FAYAICQH-PYHSRLVFDSL----QHKNV 89

Query: 85  FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGL 144
           FLWN++I  Y+      EA  +F  M  + V  D F+ S + K  S LG +  G  IHG 
Sbjct: 90  FLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGK 149

Query: 145 LRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESA 204
             ++ F                               + D+V  NS++  Y K GN E +
Sbjct: 150 SIRIGF-------------------------------VSDTVVANSIMSMYCKCGNFEES 178

Query: 205 RELFDSMPIRERNLISWNSVLNGYAQLKSGLQF---AWQIFEKMP----ERDLISWNSML 257
           R++FD M IR  N  SWN ++ GYA +     F    W+  ++M       D  + +S+L
Sbjct: 179 RKVFDEMTIR--NSGSWNVLIAGYA-VSGNCNFREETWEFVKQMQMDEVRPDAYTISSLL 235

Query: 258 HGC-VKCGKMDDAQALFDKMPKRDVVSWAN--------MIDGYAKLGRVDIARRLFDEMP 308
             C    GK D  + L   + K ++V   +        +ID Y++  +V + RR+FD M 
Sbjct: 236 PLCDGDKGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMK 295

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            R+V +  AM+ GYV NG S +AL +F +MQ    + P+  SLV VL A +    +  G 
Sbjct: 296 CRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGR 355

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV----DHWNAMINGL 424
            IH +  + + +       ALIDMYSKCGS+++A +VFE   D S+      W++MI+G 
Sbjct: 356 QIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFE---DDSLCKDAISWSSMISGY 412

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
            +HG G+ A  L  +M +  I PD IT  G+L+AC+ +GLV EGL  +  +   + +EP 
Sbjct: 413 GLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPT 472

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
           L+ + C+VD+LGRAG ++ A + I+ MP+EP   +W  L+S    + +L + E   + LI
Sbjct: 473 LEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLI 532

Query: 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
            ++  N S+YV +SN++A    W+    VR MMK++ L+K+PGCSWI +    H F+V D
Sbjct: 533 QLEPENPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVPGCSWISINNKTHCFYVAD 592

Query: 605 KSRLQVRDIYYMLDNM 620
           K+      IY MLD++
Sbjct: 593 KAHPSATSIYNMLDDL 608


>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 615

 Score =  309 bits (791), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 188/608 (30%), Positives = 311/608 (51%), Gaps = 81/608 (13%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++  + WN +I+  ++     + L ++  M  +GV  +  +  L+LKAC+ L  I+ G  
Sbjct: 8   RRSLYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQHGTM 67

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +HG + K+ F +D F+Q  L+ +Y +C ++  ARQ+FD+M  R  VS+N+M+  Y +  +
Sbjct: 68  LHGHVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVSAYSRRSS 127

Query: 201 IESARELFDSMPIR--ERNLISWNSVLNGYAQLKS------------------------- 233
           ++ A  L   M +   E    ++ S+L+GY+ L S                         
Sbjct: 128 MDQALSLLKEMWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIKLGIVYLEVS 187

Query: 234 --------GLQF-----AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR- 279
                    +QF     A ++F+ M E+ +ISW +M+ G VK G   +A  LF +M  + 
Sbjct: 188 LANSLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQS 247

Query: 280 ---DVVSWANMIDG-----------------------------------YAKLGRVDIAR 301
              D V + N+I G                                   YAK G +  AR
Sbjct: 248 VGIDFVVFLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCGNLTSAR 307

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
           R+FD + ++ +++  +M+ GYV  G+  +AL++F  M     + P+ A+L  V+SA A L
Sbjct: 308 RIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRM-IRTDIRPNGATLATVVSACADL 366

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
           G +  G  I  Y+  +    + +   +LI MYSKCGSI  A +VFE++ D  +  W +MI
Sbjct: 367 GSLSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREVFERVTDKDLTVWTSMI 426

Query: 422 NGLAIHGLGELAFDLLMEMERL-SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           N  AIHG+G  A  L  +M     I PD I +T +  AC+H+GLV+EGL  F+ M++   
Sbjct: 427 NSYAIHGMGNEAISLFHKMTTAEGIMPDAIVYTSVFLACSHSGLVEEGLKYFKSMQKDFG 486

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           + P ++H  C++D+LGR G ++ A N I+ MP +    +W  LLSACR + N+ +GE   
Sbjct: 487 ITPTVEHCTCLIDLLGRVGQLDLALNAIQGMPPDVQAQVWGPLLSACRIHGNVELGELAT 546

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
             L+     +S SYVL++N++  LG W +A  +R+ M  + L K  G S +E+    H F
Sbjct: 547 VRLLDSSPGSSGSYVLMANLYTSLGKWKEAHMMRNSMDGKGLVKESGWSQVEVTDTYHTF 606

Query: 601 FVRDKSRL 608
            V ++S++
Sbjct: 607 AVGNQSQV 614


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  309 bits (791), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 180/583 (30%), Positives = 302/583 (51%), Gaps = 45/583 (7%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   W  ++   +      EA+     M  +G +  +F+ + VL +C+       G +
Sbjct: 20  ERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRK 79

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  + K+  GS + + N ++++Y +CG  E A  +F++M +R   S+N+M+      G 
Sbjct: 80  VHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGR 139

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQ----LKSGLQFAWQIFEKMPERDLISWNSM 256
           ++ A  LF+SMP  +R+++SWN+++ GY Q     K+   F+  + E     D  +  S+
Sbjct: 140 MDLAESLFESMP--DRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSV 197

Query: 257 LHGCV-----------------------------------KCGKMDDAQALFDKMPKRD- 280
           L  C                                    K G +++A+ + D+  + D 
Sbjct: 198 LSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDL 257

Query: 281 -VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQ 339
            V+S+  +++GY K+G ++ AR +F  M  RDVVA  AM+ GY +NG + +A+++F +M 
Sbjct: 258 NVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSM- 316

Query: 340 CELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSI 399
                 P+  +L  VLS  A L  +D G  IH    +     +     A+I MY++ GS 
Sbjct: 317 ITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSF 376

Query: 400 ENAIKVFEQI-EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
             A ++F+Q+        W +MI  LA HG GE A  L  EM R  +EPD IT+ G+L+A
Sbjct: 377 PWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSA 436

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
           C+HAG V EG   ++ ++  H++ PE+ HY CMVD+L RAG    A+  I  MP+EP+ +
Sbjct: 437 CSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAI 496

Query: 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578
            W +LLSACR ++N  + E  A+ L+ +D +NS +Y  ++N+++  G W+DA R+    K
Sbjct: 497 AWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARK 556

Query: 579 ERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMW 621
           E+ ++K  G SW  +   +H F   D    Q   +Y M   MW
Sbjct: 557 EKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMW 599



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 117/260 (45%), Gaps = 39/260 (15%)

Query: 291 YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
           +AK GR+  AR +F EMP+RD V+   M+ G  R G   +A++   +M  + +  P   +
Sbjct: 2   FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFT-PTQFT 60

Query: 351 LVIVLS--AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ 408
           L  VLS  A+ Q G +  G  +H ++ K           ++++MY KCG  E A  VFE+
Sbjct: 61  LTNVLSSCAVTQAGAV--GRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFER 118

Query: 409 -------------------------------IEDGSVDHWNAMINGLAIHGLGELAFDLL 437
                                          + D S+  WNAMI G   +GL   A  L 
Sbjct: 119 MPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLF 178

Query: 438 MEM-ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
             M    S+ PD+ T T +L+ACA+ G V+ G      + R  ++    Q    ++    
Sbjct: 179 SRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRT-EMAYNSQVTNALISTYA 237

Query: 497 RAGHIEAARNLIEDMPMEPN 516
           ++G +E AR ++ D  ME +
Sbjct: 238 KSGSVENARRIM-DQSMETD 256


>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
 gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  309 bits (791), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 208/656 (31%), Positives = 331/656 (50%), Gaps = 88/656 (13%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
           QS L      ++L    Q+HA +IT+G + +  + + LVA+++          AR +F +
Sbjct: 25  QSLLKHYGAAQSLTSTKQLHAHLITSGLL-SIDIRSVLVATYAH---CGYVHNARKLFDE 80

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG-VSVDKFSASLVLKACSRLG 133
                 ++   L+N +IK Y    D  EA+ +F  ML +     D ++   V+KACS L 
Sbjct: 81  L----RQRGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSELL 136

Query: 134 LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMID 193
           L+E G  +HGL     FGS LF+ N L+++Y+ CG +E AR++FD M  +  VS+N+MI+
Sbjct: 137 LVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMIN 196

Query: 194 GYVKSGNIESARELFDSMP---------------------------------IRERNL-- 218
           GY K+G   +A  +F+ M                                  + E+ L  
Sbjct: 197 GYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHGLVEEKVLGK 256

Query: 219 -ISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM- 276
            I  N++++ YA+  S +  A  +F+ M ERD++SW SM++G +  G    A +LF  M 
Sbjct: 257 KIVSNALVDMYAKCGS-MDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQ 315

Query: 277 -----PKRDVVS--------------------W-------------ANMIDGYAKLGRVD 298
                P    ++                    W              ++ID YAK   + 
Sbjct: 316 IEGLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLG 375

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
           ++  +F    ++  V  NA++ G V N  + +A+ +F  M  E  +  + A+   +L A 
Sbjct: 376 LSFSVFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLME-GVEINAATCNSLLPAY 434

Query: 359 AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD--H 416
             L  +     I+ YL +  F  N +   +LID+YSKCGS+E+A K+F  I     D   
Sbjct: 435 GILADLQPVNNINSYLMRSGFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFV 494

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           W+ +I G  +HG GE A  L  +M +  ++P+D+TFT +L +C+HAG+V +GL  F+ M 
Sbjct: 495 WSIIIAGYGMHGHGETAVSLFKQMVQSGVKPNDVTFTSVLQSCSHAGMVDDGLYLFKFML 554

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
           + H+  P   HY CMVD+LGRAG ++ A +LI+ MP  P   +W  LL AC  +EN+ +G
Sbjct: 555 KDHQTIPNDDHYTCMVDLLGRAGRMDEAYDLIKTMPFMPGHAVWGALLGACVMHENVELG 614

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           E  A+ L  ++  N+ +YVLL+ ++A LG W DA  VR  M +  L+K P  S IE
Sbjct: 615 EVAARWLFELEPGNTGNYVLLAKLYAALGRWEDAENVRQRMDDIGLRKAPAHSLIE 670


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 203/673 (30%), Positives = 339/673 (50%), Gaps = 82/673 (12%)

Query: 20  LLRKCKTLND---VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           ++  C  L D      IH R++  GF  + ++   L+  +         + AR +F +  
Sbjct: 121 VINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCR---FNDLDKARKVFEEMP 177

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
                +D   WN++I  Y+      EAL ++    + GV  D ++ S VL+AC  LG +E
Sbjct: 178 L----RDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVE 233

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           EG  IHGL+ K+    D+ + N L+S+Y +   L   R++FDKM +RD+VS+N+MI GY 
Sbjct: 234 EGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYS 293

Query: 197 KSGNIESARELFDSMPIRER-NLISWNSVLNGYAQL------------------------ 231
           + G  E + +LF  M  + + +L++  S+L     L                        
Sbjct: 294 QVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTA 353

Query: 232 ---------KSGLQFAWQ-IFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP---K 278
                    K G   A Q +F  M  +D +SWNSM++  ++ G  D+A  LF  M    K
Sbjct: 354 SNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVK 413

Query: 279 RDVVSWANMIDGYAKLGRVDIARRLFDEMPK----RDVVACNAMMGGYVRNGYSMKALEI 334
            D V++  ++    +LG + + + L  ++ K     ++V  N ++  Y + G    +L++
Sbjct: 414 PDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKV 473

Query: 335 FDNMQ-------------------CELYLH-----------PDDASLVIVLSAIAQLGHI 364
           F+NM+                   C L L            PD A+++ +L   + L   
Sbjct: 474 FENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAK 533

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
            +G  IH  + K     +   G  LI+MYSKCGS+ N+ +VF+ ++   V  W A+I+  
Sbjct: 534 RQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISAC 593

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
            ++G G+ A     EME   I PD + F  ++ AC+H+GLV+EGL  F  M++ +K+EP 
Sbjct: 594 GMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPR 653

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
           ++HY C+VD+L R+  ++ A + I  MP++P+  IW  LLSACR   +  + E V++ +I
Sbjct: 654 IEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERII 713

Query: 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
            ++  ++  YVL+SN++A LG W+  R +R  +K R LKK PGCSW+E++  V+ F    
Sbjct: 714 ELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGT 773

Query: 605 KSRLQVRDIYYML 617
           K   Q  ++  +L
Sbjct: 774 KFFEQFEEVNKLL 786



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 150/594 (25%), Positives = 260/594 (43%), Gaps = 104/594 (17%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L    T   ++++H+ +IT G   +   + KL+A ++     P + F+      +     
Sbjct: 23  LASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFR-DPTSSFS-----VFRLASP 76

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
             + +LWN+II+  +H     EAL ++       +  D ++   V+ AC+ L   E    
Sbjct: 77  SNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKS 136

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           IH  +  + FGSDL++ N LI +Y R   L+ AR++F++M +RD VS+NS+I GY  +G 
Sbjct: 137 IHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGY 196

Query: 201 IESARELFDSMPIRERNL------ISWNSVL---NGYAQLKSGLQFAWQIFEKMP-ERDL 250
              A E++     R RNL       + +SVL    G   ++ G      + EK+  ++D+
Sbjct: 197 WNEALEIY----YRFRNLGVVPDSYTMSSVLRACGGLGSVEEG-DIIHGLIEKIGIKKDV 251

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
           I  N +L    K   + D + +FDKM  RD VSW  MI GY+++G  + + +LF EM  +
Sbjct: 252 IVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ 311

Query: 311 --------------------------------------DVVACNAMMGGYVRNGYSMKAL 332
                                                 D  A N ++  Y + G  + + 
Sbjct: 312 FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQ 371

Query: 333 EIFDNMQCE----------LYLH-------------------PDDASLVIVLSAIAQLGH 363
           E+F  M+C+          +Y+                    PD  + V++LS   QLG 
Sbjct: 372 EVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGD 431

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           +  G  +H  L K  F+ N      L+DMY+KCG + +++KVFE ++   +  WN +I  
Sbjct: 432 LHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIAS 491

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH---- 479
                   L   ++  M    + PD  T   +L  C+     ++G       + IH    
Sbjct: 492 CVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQG-------KEIHGCIF 544

Query: 480 --KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSACRNY 530
              LE ++     ++++  + G +  +  + +   M+  DV+ W  L+SAC  Y
Sbjct: 545 KLGLESDVPVGNVLIEMYSKCGSLRNSFQVFK--LMKTKDVVTWTALISACGMY 596


>gi|15241714|ref|NP_198751.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171567|sp|Q9FLZ9.1|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350
 gi|10177683|dbj|BAB11009.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007040|gb|AED94423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 677

 Score =  308 bits (790), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 207/662 (31%), Positives = 332/662 (50%), Gaps = 94/662 (14%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
           QS L      ++++    +H  +IT G +    L+T    S + + C  +T +AR +F +
Sbjct: 19  QSLLNHFAATQSISKTKALHCHVITGGRVSGHILST---LSVTYALCGHIT-YARKLFEE 74

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV--DKFSASLVLKACSRL 132
                 +     +N +I+ Y       +A+ +F  M+  GV    D ++   V KA   L
Sbjct: 75  M----PQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGEL 130

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
             ++ GL +HG + +  FG D ++QN L+++Y+  G +E AR +FD M  RD +S+N+MI
Sbjct: 131 KSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMI 190

Query: 193 DGYVKSGNIESARELFD-----SMPIRERNLISW-------------------------- 221
            GY ++G +  A  +FD     S+ +    ++S                           
Sbjct: 191 SGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLG 250

Query: 222 ------NSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVK------------ 262
                 N+++N Y  LK G +  A  +F++M  RD+I+W  M++G  +            
Sbjct: 251 DKIEVKNALVNMY--LKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCR 308

Query: 263 --------------------CG---KMDDAQALFDKMPKR----DVVSWANMIDGYAKLG 295
                               CG   K++D + L     ++    D++   ++I  YAK  
Sbjct: 309 LMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCK 368

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
           RVD+  R+F    K      +A++ G V+N     AL +F  M+ E  + P+ A+L  +L
Sbjct: 369 RVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRRE-DVEPNIATLNSLL 427

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG--- 412
            A A L  + + + IH YL K  F  +      L+ +YSKCG++E+A K+F  I++    
Sbjct: 428 PAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKS 487

Query: 413 -SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC 471
             V  W A+I+G  +HG G  A  + MEM R  + P++ITFT  LNAC+H+GLV+EGL  
Sbjct: 488 KDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTL 547

Query: 472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYE 531
           F  M   +K      HY C+VD+LGRAG ++ A NLI  +P EP   +W  LL+AC  +E
Sbjct: 548 FRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTHE 607

Query: 532 NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           N+ +GE  A  L  ++  N+ +YVLL+N++A LG W D  +VRSMM+   L+K PG S I
Sbjct: 608 NVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRSMMENVGLRKKPGHSTI 667

Query: 592 EL 593
           E+
Sbjct: 668 EI 669


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  308 bits (790), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 202/673 (30%), Positives = 339/673 (50%), Gaps = 82/673 (12%)

Query: 20  LLRKCKTLND---VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           ++  C  L D      IH R++  GF  + ++   L+  +         + AR +F +  
Sbjct: 180 VINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCR---FNDLDKARKVFEEMP 236

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
                +D   WN++I  Y+      EAL ++    + GV  D ++ S VL+AC  LG +E
Sbjct: 237 L----RDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVE 292

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           EG  IHGL+ K+    D+ + N L+S+Y +   L   R++FDKM +RD+VS+N+MI GY 
Sbjct: 293 EGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYS 352

Query: 197 KSGNIESARELFDSMPIR-ERNLISWNSVLNGYAQL------------------------ 231
           + G  E + +LF  M  + + +L++  S+L     L                        
Sbjct: 353 QVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTA 412

Query: 232 ---------KSGLQFAWQ-IFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP---K 278
                    K G   A Q +F  M  +D +SWNSM++  ++ G  D+A  LF  M    K
Sbjct: 413 SNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVK 472

Query: 279 RDVVSWANMIDGYAKLGRVDIARRLFDEMPK----RDVVACNAMMGGYVRNGYSMKALEI 334
            D V++  ++    +LG + + + L  ++ K     ++V  N ++  Y + G    +L++
Sbjct: 473 PDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKV 532

Query: 335 FDNMQ-------------------CELYLH-----------PDDASLVIVLSAIAQLGHI 364
           F+NM+                   C L L            PD A+++ +L   + L   
Sbjct: 533 FENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAK 592

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
            +G  IH  + K     +   G  LI+MYSKCGS+ N+ +VF+ ++   V  W A+I+  
Sbjct: 593 RQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISAC 652

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
            ++G G+ A     EME   I PD + F  ++ AC+H+GLV+EGL  F  M++ +K+EP 
Sbjct: 653 GMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPR 712

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
           ++HY C+VD+L R+  ++ A + I  MP++P+  IW  LLSACR   +  + + V++ +I
Sbjct: 713 IEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERII 772

Query: 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
            ++  ++  YVL+SN++A LG W+  R +R  +K R LKK PGCSW+E++  V+ F    
Sbjct: 773 ELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGT 832

Query: 605 KSRLQVRDIYYML 617
           K   Q  ++  +L
Sbjct: 833 KFSEQFEEVNKLL 845



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 149/594 (25%), Positives = 259/594 (43%), Gaps = 104/594 (17%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L    T   ++++H+ +IT G   +   + KL+A ++     P + F+      +     
Sbjct: 82  LASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFR-DPTSSFS-----VFRLASP 135

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
             + + WN+II+  +H     EAL ++       +  D ++   V+ AC+ L   E    
Sbjct: 136 SNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKS 195

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           IH  +  + FGSDL++ N LI +Y R   L+ AR++F++M +RD VS+NS+I GY  +G 
Sbjct: 196 IHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGY 255

Query: 201 IESARELFDSMPIRERNL------ISWNSVL---NGYAQLKSGLQFAWQIFEKMP-ERDL 250
              A E++     R RNL       + +SVL    G   ++ G      + EK+  ++D+
Sbjct: 256 WNEALEIY----YRFRNLGVVPDSYTMSSVLRACGGLGSVEEG-DIIHGLIEKIGIKKDV 310

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
           I  N +L    K   + D + +FDKM  RD VSW  MI GY+++G  + + +LF EM  +
Sbjct: 311 IVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ 370

Query: 311 --------------------------------------DVVACNAMMGGYVRNGYSMKAL 332
                                                 D  A N ++  Y + G  + + 
Sbjct: 371 FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQ 430

Query: 333 EIFDNMQCE----------LYLH-------------------PDDASLVIVLSAIAQLGH 363
           E+F  M+C+          +Y+                    PD  + V++LS   QLG 
Sbjct: 431 EVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGD 490

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           +  G  +H  L K  F+ N      L+DMY+KCG + +++KVFE ++   +  WN +I  
Sbjct: 491 LXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIAS 550

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH---- 479
                   L   ++  M    + PD  T   +L  C+     ++G       + IH    
Sbjct: 551 CVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQG-------KEIHGCIF 603

Query: 480 --KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSACRNY 530
              LE ++     ++++  + G +  +  + +   M+  DV+ W  L+SAC  Y
Sbjct: 604 KLGLESDVPVGNVLIEMYSKCGSLRNSFQVFK--LMKTKDVVTWTALISACGMY 655



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 153/354 (43%), Gaps = 45/354 (12%)

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
           P  +V   N+++     NG   +AL ++   Q  + L PD  +   V++A A L   +  
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQ-RIRLQPDTYTFPSVINACAGLLDFEMA 193

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
            +IH  +    F  +   G ALIDMY +   ++ A KVFE++    V  WN++I+G   +
Sbjct: 194 KSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNAN 253

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           G    A ++      L + PD  T + +L AC   G V+EG +   L+ +I   +  + +
Sbjct: 254 GYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVN 313

Query: 488 YG------------------------------CMVDILGRAGHIEAARNLIEDM--PMEP 515
            G                               M+    + G  E +  L  +M    +P
Sbjct: 314 NGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKP 373

Query: 516 NDVIWRTLLSACRNYENLNVGEPVAKHLI--GMDSSNSSSYVLLSNMFAGLGMWNDARRV 573
           + +   ++L AC +  +L  G+ V  ++I  G +   ++S +L+ NM+A  G    ++ V
Sbjct: 374 DLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILI-NMYAKCGNLLASQEV 432

Query: 574 RSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVA 627
            S MK ++       SW  +  V    ++++ S  +   ++ M+     PDSV 
Sbjct: 433 FSGMKCKD-----SVSWNSMINV----YIQNGSFDEAMKLFKMMKTDVKPDSVT 477


>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Glycine max]
          Length = 595

 Score =  308 bits (790), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 198/619 (31%), Positives = 323/619 (52%), Gaps = 49/619 (7%)

Query: 8   NQPCNSTQSTLL-LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTE 66
           N+   S +  LL L+ KC  L    QIHA ++T+  + N  + TK  A+F     T +  
Sbjct: 2   NKAGQSLKWVLLDLIHKCNDLRSFKQIHAHLLTSALVTNDLVVTK-AANFLGKHITDVHY 60

Query: 67  FARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVL 126
              ++      F      F  N +I  Y+ G  P  A++++   + NG   D ++   VL
Sbjct: 61  PCNFL----KQFDWSLSSFPCNLLISGYASGQLPWLAILIYRWTVRNGFVPDVYTFPAVL 116

Query: 127 KACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSV 186
           K+C++   I E  Q H +  K     D+++QN L+ +Y  CG         D +G     
Sbjct: 117 KSCAKFSGIGEVRQFHSVSVKTGLWCDIYVQNTLVHVYSICG---------DNVG----- 162

Query: 187 SYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKM 245
                            A ++F+ M +R+  ++SW  +++GY  +K+GL   A  +F +M
Sbjct: 163 -----------------AGKVFEDMLVRD--VVSWTGLISGY--VKTGLFNEAISLFLRM 201

Query: 246 P-ERDLISWNSMLHGCVKCGKMDDAQAL----FDKMPKRDVVSWANMIDGYAKLGRVDIA 300
             E ++ ++ S+L  C K G+++  + +    F  +   ++V    ++D Y K   V  A
Sbjct: 202 NVEPNVGTFVSILGACGKLGRLNLGKGIHGLVFKCLYGEELVVCNAVLDMYMKCDSVTDA 261

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
           R++FDEMP++D+++  +M+GG V+     ++L++F  MQ   +  PD   L  VLSA A 
Sbjct: 262 RKMFDEMPEKDIISWTSMIGGLVQCQSPRESLDLFSQMQASGF-EPDGVILTSVLSACAS 320

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
           LG +D G  +H Y++  +   +   G  L+DMY+KCG I+ A ++F  +   ++  WNA 
Sbjct: 321 LGLLDCGRWVHEYIDCHRIKWDVHIGTTLVDMYAKCGCIDMAQRIFNGMPSKNIRTWNAY 380

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCF-ELMRRIH 479
           I GLAI+G G+ A     ++      P+++TF  +  AC H GLV EG   F E+   ++
Sbjct: 381 IGGLAINGYGKEALKQFEDLVESGTRPNEVTFLAVFTACCHNGLVDEGRKYFNEMTSPLY 440

Query: 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPV 539
            L P L+HYGCMVD+L RAG +  A  LI+ MPM P+  I   LLS+   Y N+   + +
Sbjct: 441 NLSPCLEHYGCMVDLLCRAGLVGEAVELIKTMPMPPDVQILGALLSSRNTYGNVGFTQEM 500

Query: 540 AKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHE 599
            K L  ++  +S  YVLLSN++A    W + R VR +MK++ + K PG S I ++G+ HE
Sbjct: 501 LKSLPNVEFQDSGIYVLLSNLYATNKKWAEVRSVRRLMKQKGISKAPGSSIIRVDGMSHE 560

Query: 600 FFVRDKSRLQVRDIYYMLD 618
           F V D S  Q  +IY +L+
Sbjct: 561 FLVGDNSHPQSEEIYVLLN 579


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 181/577 (31%), Positives = 312/577 (54%), Gaps = 50/577 (8%)

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           D  + +AI+  Y+       A+  F  M +     +++S + ++ A ++ G +++ +Q++
Sbjct: 395 DVVVGSAILNAYTRNGSLDLAMHFFETMPER----NEYSWTTMIAAFAQCGRLDDAIQLY 450

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
             + +    +    +  +++ Y + G ++ AR +FD++   + V++N++I GY ++G ++
Sbjct: 451 ERVPEQTVAT----KTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLK 506

Query: 203 SARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLHG 259
            A++LF  MP++  N  SW +++ G+ Q    +  L+   ++          S+ S L  
Sbjct: 507 EAKDLFQKMPVK--NSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSA 564

Query: 260 CV-----------------------------------KCGKMDDAQALFDKMPKRDVVSW 284
           C                                    KCG ++D   +F  +  +D VSW
Sbjct: 565 CANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSW 624

Query: 285 ANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYL 344
            ++I G ++   +D AR +F++MPKRDVV+  A++  YV+ G+   AL++F +M     +
Sbjct: 625 NSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLAR-GI 683

Query: 345 HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIK 404
            P+  ++  +LSA   LG I  G   H  + K  F      G +LI MY KCG  E+   
Sbjct: 684 KPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFC 742

Query: 405 VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL 464
           VFE++ +  +  WNA++ G A +GLG+ A  +  +ME   I PD ++F G+L AC+HAGL
Sbjct: 743 VFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGL 802

Query: 465 VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
           V EG   F  M + + + P + HY CMVD+LGRAG++  A  LIE+MP++P+ VIW  LL
Sbjct: 803 VDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALL 862

Query: 525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKK 584
            ACR + N+ +G+ VA+ L  M    S++YVLLSN+FA  GMW+    +R +MK++ L K
Sbjct: 863 GACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTK 922

Query: 585 LPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMW 621
            PG SWI+++  +H F   D++  Q+ +IY  L   +
Sbjct: 923 EPGISWIQVKNKLHCFVTGDRTHDQIEEIYSALKEYY 959



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 145/499 (29%), Positives = 252/499 (50%), Gaps = 67/499 (13%)

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
           + LF  N  I    R G +E AR++F++M  RD VS+NSMI+GY ++G ++ AR LFD+ 
Sbjct: 169 THLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAF 228

Query: 212 PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQA 271
               +N+ +W  +L GYA+ +  ++ A ++FE M ER+++SWN+M+ G V+ G + +A+ 
Sbjct: 229 V--GKNIRTWTILLTGYAK-EGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARK 285

Query: 272 LFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKA 331
           LFD+MP+++V SW +++ GY    R+  AR LFD+MP+R+ V+   M+ GYV      +A
Sbjct: 286 LFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEA 345

Query: 332 LEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID-----KGVAIHRYLEKDQFSLNGKHG 386
            ++F  M C     PD +  V+VLSAI  L  ++     + +AI    E D        G
Sbjct: 346 WDVFVKM-CRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVV-----G 399

Query: 387 VALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE 446
            A+++ Y++ GS++ A+  FE + + +   W  MI   A  G  + A  L    ER+  E
Sbjct: 400 SAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLY---ERVP-E 455

Query: 447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARN 506
               T T ++ A A  G +++  L F+ +     L P +  +  ++    + G ++ A++
Sbjct: 456 QTVATKTAMMTAYAQVGRIQKARLIFDEI-----LNPNVVAWNAIIAGYTQNGMLKEAKD 510

Query: 507 LIEDMPME----------------------------------PNDVIWRTLLSACRNYEN 532
           L + MP++                                  P+D  + + LSAC N  +
Sbjct: 511 LFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGD 570

Query: 533 LNVGEPVAKHLIGMDSS-NSSSYVL--LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCS 589
           + +G  +  H + + +    +SYV+  L +M+A  G   D   V      R ++     S
Sbjct: 571 VEIGRVI--HSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVF-----RTIRVKDTVS 623

Query: 590 WIELEGVVHEFFVRDKSRL 608
           W  L   + E ++ D +R+
Sbjct: 624 WNSLISGLSENYMLDDARV 642



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 150/578 (25%), Positives = 248/578 (42%), Gaps = 145/578 (25%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   WN++I  YS      EA ++F    D  V  +  + +++L   ++ G IEE  +
Sbjct: 199 QRDVVSWNSMINGYSQNGKVDEARLLF----DAFVGKNIRTWTILLTGYAKEGRIEEARE 254

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +   + +     ++   N +IS YV+ G L+ AR+LFD+M  ++  S+NS++ GY     
Sbjct: 255 VFESMTE----RNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYR 310

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM------P-------- 246
           +  ARELFD MP  ERN +SW  +++GY  +    + AW +F KM      P        
Sbjct: 311 MSEARELFDQMP--ERNSVSWMVMISGYVHISDYWE-AWDVFVKMCRTVARPDQSIFVVV 367

Query: 247 -------------------------ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV 281
                                    E D++  +++L+   + G +D A   F+ MP+R+ 
Sbjct: 368 LSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNE 427

Query: 282 VSWANMI-------------------------------DGYAKLGRVDIARRLFDEMPKR 310
            SW  MI                                 YA++GR+  AR +FDE+   
Sbjct: 428 YSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNP 487

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCE-------------------------LYLH 345
           +VVA NA++ GY +NG   +A ++F  M  +                         + LH
Sbjct: 488 NVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELH 547

Query: 346 -----PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE 400
                P D+S    LSA A +G ++ G  IH    K     N      LI MY+KCG++E
Sbjct: 548 RSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVE 607

Query: 401 NAIKVFEQIEDGSVDHWNAMINGLAIH-------------------------------GL 429
           +   VF  I       WN++I+GL+ +                               G 
Sbjct: 608 DGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGH 667

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
           GE+A DL ++M    I+P+ +T T LL+AC + G +K G     L+ ++   +  L    
Sbjct: 668 GEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKL-GFDTFLFVGN 726

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSAC 527
            ++ +  + G+ E    + E+MP E + + W  +L  C
Sbjct: 727 SLITMYFKCGY-EDGFCVFEEMP-EHDLITWNAVLVGC 762



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 121/465 (26%), Positives = 223/465 (47%), Gaps = 76/465 (16%)

Query: 115 VSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFAR 174
           +  D  S + ++   S+ G ++E      LL     G ++     L++ Y + G +E AR
Sbjct: 198 IQRDVVSWNSMINGYSQNGKVDEAR----LLFDAFVGKNIRTWTILLTGYAKEGRIEEAR 253

Query: 175 QLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG 234
           ++F+ M  R+ VS+N+MI GYV++G++++AR+LFD MP  E+N+ SWNSV+ GY      
Sbjct: 254 EVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMP--EKNVASWNSVVTGYCHCYR- 310

Query: 235 LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR--------------- 279
           +  A ++F++MPER+ +SW  M+ G V      +A  +F KM +                
Sbjct: 311 MSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSA 370

Query: 280 ------------------------DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
                                   DVV  + +++ Y + G +D+A   F+ MP+R+  + 
Sbjct: 371 ITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSW 430

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
             M+  + + G    A+++++ +  +       A+   +++A AQ+G I K     R + 
Sbjct: 431 TTMIAAFAQCGRLDDAIQLYERVPEQTV-----ATKTAMMTAYAQVGRIQKA----RLIF 481

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
            +  + N     A+I  Y++ G ++ A  +F+++   +   W AMI G   +     A +
Sbjct: 482 DEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALE 541

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC----- 490
           LL+E+ R    P D +FT  L+ACA+ G V       E+ R IH L  +    GC     
Sbjct: 542 LLIELHRSGSVPSDSSFTSALSACANIGDV-------EIGRVIHSLAIKT---GCQFNSY 591

Query: 491 ----MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA-CRNY 530
               ++ +  + G++E   ++   + ++ + V W +L+S    NY
Sbjct: 592 VMNGLISMYAKCGNVEDGSHVFRTIRVK-DTVSWNSLISGLSENY 635



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 122/454 (26%), Positives = 210/454 (46%), Gaps = 55/454 (12%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           K+   W A+I  +    + +EAL +   +  +G      S +  L AC+ +G +E G  I
Sbjct: 518 KNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVI 577

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H L  K     + ++ N LIS+Y +CG +E    +F  + ++D+VS+NS+I G  ++  +
Sbjct: 578 HSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYML 637

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----ISWNSML 257
           + AR +F+ MP  +R+++SW ++++ Y Q   G + A  +F  M  R +    ++  S+L
Sbjct: 638 DDARVVFEKMP--KRDVVSWTAIISAYVQAGHG-EVALDLFLDMLARGIKPNQLTVTSLL 694

Query: 258 HGCVKCGKM---DDAQALFDKMPKRDVVSWAN-MIDGYAKLGRVDIARRLFDEMPKRDVV 313
             C   G +   +   AL  K+     +   N +I  Y K G  D    +F+EMP+ D++
Sbjct: 695 SACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYED-GFCVFEEMPEHDLI 753

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA-IHR 372
             NA++ G  +NG   +A++IF+ M+ E  L PD  S + VL A +  G +D+G A  + 
Sbjct: 754 TWNAVLVGCAQNGLGKEAIKIFEQMEVEGIL-PDQMSFLGVLCACSHAGLVDEGWAHFNS 812

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ--IEDGSVDHWNAMINGLAIH--- 427
             +K        H   ++D+  + G +  A  + E   ++  SV  W A++    IH   
Sbjct: 813 MTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVI-WEALLGACRIHRNV 871

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL----------------------- 464
            LG+   + L +M +    P   T+  L N  A  G+                       
Sbjct: 872 ELGQRVAERLFQMTK----PKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGIS 927

Query: 465 ---VKEGLLCFELMRRIHKLEPEL-----QHYGC 490
              VK  L CF    R H    E+     ++YGC
Sbjct: 928 WIQVKNKLHCFVTGDRTHDQIEEIYSALKEYYGC 961



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 182/397 (45%), Gaps = 56/397 (14%)

Query: 23  KCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKK 82
           KC  + D + +      T  +K+T     L++  S +    + + AR +F K      K+
Sbjct: 602 KCGNVEDGSHV----FRTIRVKDTVSWNSLISGLSENY---MLDDARVVFEKM----PKR 650

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           D   W AII  Y      + AL +F  ML  G+  ++ + + +L AC  LG I+ G Q H
Sbjct: 651 DVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFH 710

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
            L+ K+ F + LF+ N LI++Y +CGY E    +F++M   D +++N+++ G  ++G  +
Sbjct: 711 ALIFKLGFDTFLFVGNSLITMYFKCGY-EDGFCVFEEMPEHDLITWNAVLVGCAQNGLGK 769

Query: 203 SARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVK 262
            A ++F+ M +                    G+         +P  D +S+  +L  C  
Sbjct: 770 EAIKIFEQMEVE-------------------GI---------LP--DQMSFLGVLCACSH 799

Query: 263 CGKMDDAQALFDKMPKRD-----VVSWANMIDGYAKLGRVDIARRLFDEMP-KRDVVACN 316
            G +D+  A F+ M ++      V  +  M+D   + G +  A  L + MP K D V   
Sbjct: 800 AGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWE 859

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELY--LHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
           A++G    +    + +E+   +   L+    P  A+ V++ +  A  G  DK VA  R L
Sbjct: 860 ALLGACRIH----RNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWDK-VAEIRKL 914

Query: 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED 411
            KDQ  L  + G++ I + +K        +  +QIE+
Sbjct: 915 MKDQ-GLTKEPGISWIQVKNKLHCFVTGDRTHDQIEE 950



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 143/291 (49%), Gaps = 25/291 (8%)

Query: 243 EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
           ++ P+  L   N+ +    + G++++A+ +F++M +RDVVSW +MI+GY++ G+VD AR 
Sbjct: 164 KETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARL 223

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           LFD    +++     ++ GY + G   +A E+F++M        +  S   ++S   Q G
Sbjct: 224 LFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMT-----ERNVVSWNAMISGYVQNG 278

Query: 363 HIDKGVAIHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
            +     +   + EK+  S N     +++  Y  C  +  A ++F+Q+ + +   W  MI
Sbjct: 279 DLKNARKLFDEMPEKNVASWN-----SVVTGYCHCYRMSEARELFDQMPERNSVSWMVMI 333

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
           +G         A+D+ ++M R    PD   F  +L+A         GL   EL+  +  +
Sbjct: 334 SGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAIT-------GLDDLELIGSLRPI 386

Query: 482 EPELQHYG------CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
             +  + G       +++   R G ++ A +  E MP E N+  W T+++A
Sbjct: 387 AIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMP-ERNEYSWTTMIAA 436


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 156/359 (43%), Positives = 226/359 (62%), Gaps = 4/359 (1%)

Query: 264 GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV 323
           G + D   L       D  ++  +I  YA+ GR+  AR LFDEMP R+ V+ +AM+ GYV
Sbjct: 126 GSLADGLLLLRTAAAVDASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYV 185

Query: 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG 383
           + G   +AL IF  MQ E  + PDD  LV VL+A AQ G +++G  +H YL+     +N 
Sbjct: 186 QAGDGREALRIFARMQAE-DVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINL 244

Query: 384 KHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
             G AL+DMYSKCG ++ A+ VFE+++  +V  W  MI GLA+HG G  A  L  +ME  
Sbjct: 245 FFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESS 304

Query: 444 SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503
            I PDDI F G+L AC HAGLV +G   F+ M R + ++P+++HYGCMVD+L R G +  
Sbjct: 305 GIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYE 364

Query: 504 ARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563
           A+ +I+ MPMEP+ +IW  L++ CR ++N+   E VAKH I ++   S +YVLLSN++A 
Sbjct: 365 AKEMIQKMPMEPDALIWGALMAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAA 424

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI---YYMLDN 619
            G    AR +R +M+E+ + K PGCS +E+ GV+H+F V D S  +++DI   +Y +D 
Sbjct: 425 SGRHASAREIRHLMREKGVDKTPGCSTVEVNGVIHQFIVGDLSHPRIKDILSKWYEIDT 483



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 110/457 (24%), Positives = 193/457 (42%), Gaps = 83/457 (18%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFI-KNTHLTTKLVASFSSS--PCTPLTEFARYIFFKYH 76
           LL +C     + +I A ++T+G + ++  L   L+ + S S  P   L  +A       H
Sbjct: 10  LLSRCGEARAIVRIQAALLTSGQLPRSVELHDALIRALSRSARPHLALPLYA-------H 62

Query: 77  AFREK--KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGV--SVDKF---SASLVLKAC 129
             R      P    +++K+ +       A V+   +  + V   +D+F   S +L+    
Sbjct: 63  LLRAGLLPTPHTLPSLLKSMALSPAVPGAAVLALTVHTHAVKLGLDRFVLVSNALIRVHA 122

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
             LG + +GL    LL + A   D    N LI+ Y R G L  AR LFD+M  R++VS++
Sbjct: 123 GFLGSLADGL----LLLRTAAAVDASTFNTLITAYARAGRLADARALFDEMPARNAVSWS 178

Query: 190 SMIDGYVKSGNIESARELFDSMPIRER--------------------------------- 216
           +M++GYV++G+   A  +F  M   +                                  
Sbjct: 179 AMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAH 238

Query: 217 ----NLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
               NL    ++++ Y++    +Q A  +FE+M  +++++W +M+ G    G+  +A  L
Sbjct: 239 GIKINLFFGTALVDMYSKCGE-VQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVML 297

Query: 273 FDKMP----KRDVVSWANMIDGYAKLGRVDIARRLFDEM-------PKRDVVACNAMMGG 321
           F +M     + D +++  ++      G VD  R LFD M       PK +   C  M+  
Sbjct: 298 FAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGC--MVDL 355

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
             RNG+  +A E+   M  E    PD     ++  A+       K V    Y+ K    L
Sbjct: 356 LARNGFLYEAKEMIQKMPME----PD----ALIWGALMAGCRFHKNVEFAEYVAKHWILL 407

Query: 382 N-GKHG--VALIDMYSKCGSIENAIKVFEQIEDGSVD 415
              K G  V L ++Y+  G   +A ++   + +  VD
Sbjct: 408 EPDKSGAYVLLSNIYAASGRHASAREIRHLMREKGVD 444


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 187/512 (36%), Positives = 291/512 (56%), Gaps = 17/512 (3%)

Query: 113 NGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF 172
           N  S+       ++    R   I + L IH  L +     D F+   L+    +C  +++
Sbjct: 40  NPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDY 99

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK 232
           A ++F      +   Y ++IDG+V SGN   A +L+  M     + I  ++ L       
Sbjct: 100 ASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRML---HDSILPDNYLMASILKA 156

Query: 233 SGLQFAWQIFEKMPERDL---ISWNSM-------LHGCVKCGKMDDAQALFDKMPKRDVV 282
            G Q A +   ++  R L   +S N +       L+G  KCG++ DA+ +F++MP+ DVV
Sbjct: 157 CGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYG--KCGELGDARRVFEEMPE-DVV 213

Query: 283 SWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
           +   MI  Y+  G V+ A  +F  + ++D V   AM+ G+VRN    +ALE F  MQ E 
Sbjct: 214 ASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGE- 272

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENA 402
            + P++ ++V VLSA +QLG ++ G  +H Y+ K +  LN   G ALI+MYS+CGSI+ A
Sbjct: 273 NVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEA 332

Query: 403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
             VF++++D  V  +N MI+GL+++G    A +L   M    + P ++TF G+LNAC+H 
Sbjct: 333 QTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHG 392

Query: 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRT 522
           GLV  G   F  M R + +EP+++HYGCMVD+LGR G +E A +LI  M M P+ ++  T
Sbjct: 393 GLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGT 452

Query: 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
           LLSAC+ ++NL +GE VAK L     ++S +YVLLS+++A  G W +A +VR+ MKE  +
Sbjct: 453 LLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGM 512

Query: 583 KKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           +K PGCS IE+   +HEF + D    +   IY
Sbjct: 513 QKEPGCSSIEVNNEIHEFLLGDLRHPRKERIY 544



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/448 (25%), Positives = 213/448 (47%), Gaps = 53/448 (11%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LL++ K +N V  IHA++I  G  ++  +  +L+ S   S C  + ++A  IF   H   
Sbjct: 55  LLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRS--CSKCHAI-DYASRIFQYTH--- 108

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
              + +L+ A+I  +    +  +A+ ++  ML + +  D +  + +LKAC     + EG 
Sbjct: 109 -NPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGR 167

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           ++H    K+   S+  ++  ++ LY +CG L  AR++F++M   D V+   MI  Y   G
Sbjct: 168 EVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMP-EDVVASTVMISSYSDQG 226

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----ISWNS 255
            +E A  +F    +R ++ + W ++++G+ +    +  A + F  M   ++     +   
Sbjct: 227 LVEEAGAVFSR--VRRKDTVCWTAMIDGFVR-NEEMNRALEAFRGMQGENVRPNEFTIVC 283

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDV----VSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           +L  C + G ++  + +   M K ++         +I+ Y++ G +D A+ +FDEM  RD
Sbjct: 284 VLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRD 343

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           V+  N M+ G   NG S +A+E+F  M     L P + + V VL+A +  G +D G  I 
Sbjct: 344 VITYNTMISGLSMNGKSRQAIELFRVM-IGRRLRPTNVTFVGVLNACSHGGLVDFGFKIF 402

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
             + +D       +GV                       +  ++H+  M++ L   G  E
Sbjct: 403 HSMTRD-------YGV-----------------------EPQIEHYGCMVDLLGRVGRLE 432

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNAC 459
            A+DL+  M+   + PD I    LL+AC
Sbjct: 433 EAYDLIRTMK---MTPDHIMLGTLLSAC 457


>gi|449464272|ref|XP_004149853.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Cucumis sativus]
 gi|449520209|ref|XP_004167126.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Cucumis sativus]
          Length = 840

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 199/630 (31%), Positives = 335/630 (53%), Gaps = 54/630 (8%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           +HA ++  G     ++ T L+  +       L E A+ +F K      +K+   WN++I 
Sbjct: 203 VHAYVVKMGLGGCIYVATSLLDMYGK---CGLCEEAKKVFDKIL----EKNIVAWNSMIV 255

Query: 93  TYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGS 152
            ++      EA+  F  M   GV+  + + S  L A + L +I+EG Q H L        
Sbjct: 256 NFTQNGLNAEAVETFYEMRVEGVAPTQVTLSSFLSASANLSVIDEGKQGHALAVLSGLEL 315

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAREL----- 207
              L + LI+ Y + G +E A  +F +M  +D+V++N ++ GYV +G ++ A +L     
Sbjct: 316 TNILGSSLINFYSKVGLVEDAELVFSEMLEKDTVTWNLLVSGYVHNGLVDRALDLCHVMQ 375

Query: 208 -----FDSMPIR---------------------------ERNLISWNSVLNGYAQLKSGL 235
                FDS+ +                            E ++   +S+++ YA+ +  L
Sbjct: 376 SENLRFDSVTLASIMAAAADSRNLKLGKEGHSFCVRNNLESDVAVASSIIDMYAKCEK-L 434

Query: 236 QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP----KRDVVSWANMIDGY 291
           + A ++F+   +RDLI WN++L    + G   +   LF +M       +V+SW ++I G 
Sbjct: 435 ECARRVFDATAKRDLIMWNTLLAAYAEQGHSGETLKLFYQMQLEGLPPNVISWNSVILGL 494

Query: 292 AKLGRVDIARRLFDEMPK----RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD 347
              G+VD A+  F EM       +++    ++ G  +NG   +A   F +M+ E  + P+
Sbjct: 495 LNKGKVDQAKDTFMEMQSLGICPNLITWTTLICGLAQNGLGDEAFLTFQSME-EAGIKPN 553

Query: 348 DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFE 407
             S+  +LSA + +  +  G AIH Y+ + + S++     +L++MY+KCGSI  A +VF+
Sbjct: 554 SLSISSLLSACSTMASLPHGRAIHCYITRHELSVSTPVLCSLVNMYAKCGSINQAKRVFD 613

Query: 408 QIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKE 467
            I    +  +NAMI+G A+HG    A  L   ++   I+PD+ITFT +L+AC HAGLV+E
Sbjct: 614 MILKKELPVYNAMISGYALHGQAVEALSLFRRLKEECIKPDEITFTSILSACGHAGLVRE 673

Query: 468 GLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSAC 527
           GL  F  M   HK+  + +HYGC+V IL R+ +++ A  +I  MP EP+  I+ +LL+AC
Sbjct: 674 GLELFIDMVSNHKIVAQAEHYGCLVSILSRSHNLDEALRIILGMPFEPDAFIFGSLLAAC 733

Query: 528 RNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPG 587
           R + +  + E + + L+ ++  NS +YV LSN +A  GMW++A +VR +MKER+L K+PG
Sbjct: 734 REHPDFELKERLFERLLKLEPDNSGNYVALSNAYAATGMWDEASKVRGLMKERSLSKIPG 793

Query: 588 CSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
            S I++    H FF  DKS  + ++IY ML
Sbjct: 794 HSLIQIGNKTHVFFAGDKSHSRTKEIYMML 823



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 150/587 (25%), Positives = 252/587 (42%), Gaps = 121/587 (20%)

Query: 20  LLRKC---KTLNDVNQIHARMITTG--FIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
           LL+ C   + L+   QIH R++  G    KN ++ TKLV  +S   C   +E A  +F K
Sbjct: 84  LLQGCVYERALSLGQQIHGRILKNGESIAKNEYIETKLVIFYSK--CDE-SEIANRLFGK 140

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
                  ++ F W AI+   S     +EAL+ F  M + G+ +D F   +  KA   L  
Sbjct: 141 LQV----QNEFSWAAIMGLKSRMGFNQEALMGFREMHEYGLLLDNFVIPIAFKASGALRW 196

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           I  G  +H  + K+  G  +++   L+ +Y +CG  E A+++FDK+  ++ V++NSMI  
Sbjct: 197 IGFGKSVHAYVVKMGLGGCIYVATSLLDMYGKCGLCEEAKKVFDKILEKNIVAWNSMIVN 256

Query: 195 YVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLK--------------SGLQF- 237
           + ++G    A E F  M +       ++ +S L+  A L               SGL+  
Sbjct: 257 FTQNGLNAEAVETFYEMRVEGVAPTQVTLSSFLSASANLSVIDEGKQGHALAVLSGLELT 316

Query: 238 -------------------AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL------ 272
                              A  +F +M E+D ++WN ++ G V  G +D A  L      
Sbjct: 317 NILGSSLINFYSKVGLVEDAELVFSEMLEKDTVTWNLLVSGYVHNGLVDRALDLCHVMQS 376

Query: 273 ----FDKMP-----------------------------KRDVVSWANMIDGYAKLGRVDI 299
               FD +                              + DV   +++ID YAK  +++ 
Sbjct: 377 ENLRFDSVTLASIMAAAADSRNLKLGKEGHSFCVRNNLESDVAVASSIIDMYAKCEKLEC 436

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           ARR+FD   KRD++  N ++  Y   G+S + L++F  MQ E  L P+  S   V+  + 
Sbjct: 437 ARRVFDATAKRDLIMWNTLLAAYAEQGHSGETLKLFYQMQLE-GLPPNVISWNSVILGLL 495

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
             G +D+         KD F          ++M S  G   N I             W  
Sbjct: 496 NKGKVDQA--------KDTF----------MEMQS-LGICPNLIT------------WTT 524

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           +I GLA +GLG+ AF     ME   I+P+ ++ + LL+AC+    +  G      + R H
Sbjct: 525 LICGLAQNGLGDEAFLTFQSMEEAGIKPNSLSISSLLSACSTMASLPHGRAIHCYITR-H 583

Query: 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           +L         +V++  + G I  A+ +  DM ++    ++  ++S 
Sbjct: 584 ELSVSTPVLCSLVNMYAKCGSINQAKRVF-DMILKKELPVYNAMISG 629


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 202/679 (29%), Positives = 333/679 (49%), Gaps = 86/679 (12%)

Query: 20  LLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+ C    D+N   ++H   + TGF  +  +   LV  ++      L + +R +F    
Sbjct: 88  VLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAK---CGLLDDSRRLF---- 140

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
               +++   WNA+   Y       EA+ +F  M+ +G+  ++FS S++L AC+ L   +
Sbjct: 141 GGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGD 200

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G +IHGL+ K+    D F  N L+ +Y + G +E A  +F  +   D VS+N++I G V
Sbjct: 201 LGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCV 260

Query: 197 KSGNIESARELFDSM--PIRERNLISWNSVLNGYA---------QLKSGL---------- 235
                + A  L D M       N+ + +S L   A         QL S L          
Sbjct: 261 LHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLF 320

Query: 236 ---------------QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRD 280
                            A + ++ MP++D+I+WN+++ G  +CG   DA +LF KM   D
Sbjct: 321 AAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSED 380

Query: 281 V---------------------------------------VSWANMIDGYAKLGRVDIAR 301
           +                                           +++D Y K   +D A 
Sbjct: 381 IDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEAS 440

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
           ++F+E    D+VA  +M+  Y + G   +AL+++  MQ +  + PD      +L+A A L
Sbjct: 441 KIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQ-DADIKPDPFICSSLLNACANL 499

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
              ++G  +H +  K  F  +     +L++MY+KCGSIE+A + F +I +  +  W+AMI
Sbjct: 500 SAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMI 559

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
            G A HG G+ A  L  +M R  + P+ IT   +L AC HAGLV EG   FE M  +  +
Sbjct: 560 GGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGI 619

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
           +P  +HY CM+D+LGR+G +  A  L+  +P E +  +W  LL A R ++N+ +G+  AK
Sbjct: 620 KPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAK 679

Query: 542 HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
            L  ++   S ++VLL+N++A  GMW +  +VR  MK+  +KK PG SWIE++  V+ F 
Sbjct: 680 MLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFI 739

Query: 602 VRDKSRLQVRDIYYMLDNM 620
           V D+S  +  +IY  LD +
Sbjct: 740 VGDRSHSRSDEIYAKLDQL 758



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 149/571 (26%), Positives = 248/571 (43%), Gaps = 114/571 (19%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           ++HA +I  GF ++  L   LV  +S   C     +AR +  +      + D   W++++
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSK--CRRFG-YARKLVDE----SSELDVVSWSSLL 54

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
             Y      +EAL++F  M   GV  ++F+   VLKACS    +  G ++HG+     F 
Sbjct: 55  SGYVQNGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFE 114

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
           SD F+ N L+ +Y +CG L+ +R+LF  +  R+ VS+N++   YV+S     A  LF  M
Sbjct: 115 SDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEM 174

Query: 212 PIRE---RNLISWNSVLNGYAQLKSG---------------------------------- 234
            +R     N  S + +LN  A L+ G                                  
Sbjct: 175 -VRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGE 233

Query: 235 LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM------------------ 276
           ++ A  +F+ +   D++SWN+++ GCV     D A  L D+M                  
Sbjct: 234 IEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKA 293

Query: 277 ---------------------PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
                                   D+ +   ++D Y+K   +D ARR +D MPK+D++A 
Sbjct: 294 CAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAW 353

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY-- 373
           NA++ GY + G  + A+ +F  M  E  +  +  +L  VL ++A L  I     IH    
Sbjct: 354 NALISGYSQCGDHLDAVSLFSKMFSE-DIDFNQTTLSTVLKSVASLQAIKVCKQIHTISI 412

Query: 374 ---LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
              +  D + +N     +L+D Y KC  I+ A K+FE+     +  + +MI   + +G G
Sbjct: 413 KSGIYSDFYVIN-----SLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDG 467

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
           E A  L ++M+   I+PD    + LLNACA+    ++G           +L      +G 
Sbjct: 468 EEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQG----------KQLHVHAIKFGF 517

Query: 491 MVDIL---------GRAGHIEAARNLIEDMP 512
           M DI           + G IE A     ++P
Sbjct: 518 MCDIFASNSLVNMYAKCGSIEDADRAFSEIP 548



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 122/404 (30%), Positives = 190/404 (47%), Gaps = 61/404 (15%)

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
           +++H  L K  F  D  L+N L++LY +C    +AR+L D+    D VS++S++ GYV++
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 199 GNIESARELFDSMPIR--ERNLISWNSVLNGYA---QLKSGLQFAWQIFEKMPERDLISW 253
           G +E A  +F+ M +   + N  ++ SVL   +    L  G +          E D    
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
           N+++    KCG +DD++ LF  + +R+VVSW  +   Y +      A  LF EM      
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEM------ 174

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
                    VR+G                 + P++ S+ I+L+A A L   D G  IH  
Sbjct: 175 ---------VRSG-----------------IMPNEFSISIILNACAGLQEGDLGRKIHGL 208

Query: 374 LEK-----DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
           + K     DQFS N     AL+DMYSK G IE A+ VF+ I    V  WNA+I G  +H 
Sbjct: 209 MLKMGLDLDQFSAN-----ALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHD 263

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH----KLEPE 484
             +LA  LL EM+     P+  T +  L ACA  G         EL R++H    K++  
Sbjct: 264 CNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFK-------ELGRQLHSSLIKMDAH 316

Query: 485 LQHYGC--MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
              +    +VD+  +   ++ AR   + MP + + + W  L+S 
Sbjct: 317 SDLFAAVGLVDMYSKCEMMDDARRAYDSMP-KKDIIAWNALISG 359



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 153/325 (47%), Gaps = 38/325 (11%)

Query: 6   NYNQPCNSTQ----STLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPC 61
           ++NQ   ST     ++L  ++ CK      QIH   I +G   + ++   L+ ++    C
Sbjct: 382 DFNQTTLSTVLKSVASLQAIKVCK------QIHTISIKSGIYSDFYVINSLLDTYGK--C 433

Query: 62  TPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFS 121
             + E A  IF +    R  +D   + ++I  YS   D +EAL ++  M D  +  D F 
Sbjct: 434 NHIDE-ASKIFEE----RTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFI 488

Query: 122 ASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
            S +L AC+ L   E+G Q+H    K  F  D+F  N L+++Y +CG +E A + F ++ 
Sbjct: 489 CSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIP 548

Query: 182 IRDSVSYNSMIDGYVKSGNIESARELF-----DSMPIRERNLISWNSVLNGYAQLKSGLQ 236
            R  VS+++MI GY + G+ + A  LF     D +P     L+S     N    +  G Q
Sbjct: 549 NRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQ 608

Query: 237 FAWQIFEKMPERDLISWNSMLHGCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDG 290
           +    FEKM     I      + C+     + GK+++A  L + +P + D   W  ++ G
Sbjct: 609 Y----FEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALL-G 663

Query: 291 YAKLGR-----VDIARRLFDEMPKR 310
            A++ +        A+ LFD  P++
Sbjct: 664 AARIHKNIELGQKAAKMLFDLEPEK 688


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 150/357 (42%), Positives = 228/357 (63%), Gaps = 1/357 (0%)

Query: 264 GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV 323
           G++ DA  L       D  ++  +I  YA+ GRV  AR LFDEMP R+ V+ +AM+ GYV
Sbjct: 260 GRLSDALVLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYV 319

Query: 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG 383
           + G   +AL +F  MQ +  + PDD  LV VL+A AQLG +++G  +H YL+ +   +  
Sbjct: 320 QAGDGREALGLFARMQAD-GVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITV 378

Query: 384 KHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
             G AL+DMY+KCG ++ A++VF+ +++ +V  W  MI GLA+HG G  A +L  +MERL
Sbjct: 379 FLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERL 438

Query: 444 SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503
            ++PDDI F G L AC H GLV +G   F+ M R + ++P+++HYGCMVD+L R G +  
Sbjct: 439 GVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNE 498

Query: 504 ARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563
           AR ++E MPM+P+ +IW  L++ CR ++N+ + E V KH I ++   S +YVLL N++A 
Sbjct: 499 AREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAA 558

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            G    AR +R +M+E+ + K PGCS +E++GV+H+F V D S   + +I    D +
Sbjct: 559 SGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEILSKWDEI 615



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 36/241 (14%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           W+A++  Y    D +EAL +F  M  +GV  D      VL AC++LG++E+G  +HG L+
Sbjct: 311 WSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLK 370

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
                  +FL   L+ +Y +CG ++ A ++F  M  ++ +++ +MI G    G    A E
Sbjct: 371 ANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALE 430

Query: 207 LFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKM 266
           LF  M   ER  +                           + D I++   L  C   G +
Sbjct: 431 LFSQM---ERLGV---------------------------KPDDIAFIGALCACTHTGLV 460

Query: 267 DDAQALFDKMPKR-----DVVSWANMIDGYAKLGRVDIARRLFDEMP-KRDVVACNAMMG 320
           D  + LFD M ++      +  +  M+D  A+ G ++ AR + ++MP K D +   A+M 
Sbjct: 461 DKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMA 520

Query: 321 G 321
           G
Sbjct: 521 G 521



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 179/427 (41%), Gaps = 86/427 (20%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           ++A ++  G     H    L+ S + SP  P    AR +    HA               
Sbjct: 193 LYAHLLRAGHHPTPHTLPSLLKSLALSPAVP---GARGLALAVHA--------------- 234

Query: 93  TYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGS 152
              H +  K  L  F L+          S +L+      LG + + L    +L + A   
Sbjct: 235 ---HAV--KLGLAGFLLV----------SNALIRVHAGILGRLSDAL----VLLRTAASV 275

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           D    N LI+ Y R G +  AR LFD+M  R++VS+++M++GYV++G+   A  LF  M 
Sbjct: 276 DASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQ 335

Query: 213 ---IRERNLISWNSVLNGYAQLKSGLQFAW-QIFEKMPERDLISW--NSMLHGCVKCGKM 266
              +R  + +    VL   AQL    Q  W   + K     +  +   +++    KCG+M
Sbjct: 336 ADGVRPDDTV-LVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEM 394

Query: 267 DDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNG 326
             A  +F  M +++V++W  MI G A  GR                              
Sbjct: 395 QLAMEVFKVMKEKNVLAWTTMIKGLAMHGR------------------------------ 424

Query: 327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK-- 384
              +ALE+F  M+  L + PDD + +  L A    G +DKG  +   + + ++ +  K  
Sbjct: 425 -GSEALELFSQME-RLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVR-KYGIKPKIE 481

Query: 385 HGVALIDMYSKCGSIENAIKVFEQI---EDGSVDHWNAMINGLAIHGLGELAFDLLMEME 441
           H   ++D+ ++ G +  A ++ E++    D  +  W A++ G   H   ELA  ++    
Sbjct: 482 HYGCMVDLLARNGLLNEAREMVEKMPMKPDALI--WGALMAGCRFHKNVELAEYVVKHW- 538

Query: 442 RLSIEPD 448
            + +EPD
Sbjct: 539 -IELEPD 544


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 217/703 (30%), Positives = 338/703 (48%), Gaps = 94/703 (13%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKN-THLTTKLVASFSSSPCTPLTEFARYI 71
           S+ ++L+     K+L     +HA++I      +  +L   L+  ++   C  L + A+ +
Sbjct: 9   SSFNSLVQFTHQKSLQKGRALHAQIIKLASSSSCIYLANSLINFYAK--CCHLPK-AKLV 65

Query: 72  FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVM--FCLMLDNGVSVDKFSASLVLKAC 129
           F + H     KD   WN +I  YS       + VM  F  M  + +  +  + S +  A 
Sbjct: 66  FDRIH----NKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAA 121

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
           S L  I  G Q H +  K+A   D+F+ + L+++Y + G L  AR++FD+M  R+ V++ 
Sbjct: 122 SNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWA 181

Query: 190 SMIDGYVKSGNIESARELFDSMPIRER--NLISWNSVLNGYA--------------QLKS 233
           +MI GY        A E+F+ M   E   N  ++ SVL+  A               +K+
Sbjct: 182 TMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKT 241

Query: 234 GLQF--------------------AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALF 273
           GL                      + Q+FE   +++ I+W++M+ G  + G    A  LF
Sbjct: 242 GLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLF 301

Query: 274 DKMP---------------------------------------KRDVVSWANMIDGYAKL 294
            +M                                        +  +     ++D YAK 
Sbjct: 302 SRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKS 361

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
           G  + AR+ F+ + + D+V   +M+ GYV+NG +  AL ++  MQ E  L P++ ++  V
Sbjct: 362 GVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGIL-PNELTMASV 420

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
           L A + L   D+G  IH    K    L    G AL  MY+KCG++E    VF ++ +  +
Sbjct: 421 LKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDI 480

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
             WNAMI+GL+ +G G+ A +L  EM +   +PDD+TF  +L+AC+H GLV  G L F +
Sbjct: 481 ISWNAMISGLSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACSHMGLVDSGWLYFRM 540

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534
           M     L P+++HY CMVD+L RAG +  A+  IE   ++    +WR LL ACRNY N  
Sbjct: 541 MFDEFGLLPKVEHYACMVDVLSRAGKLYEAKEFIESTTIDHGLCLWRILLGACRNYRNYE 600

Query: 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           +G    + L+ + S  SS+YVLLS ++  LG   D  RVRSMMK R + K PGCSWIEL+
Sbjct: 601 LGAYAGEKLMELGSQESSAYVLLSGIYTALGRPEDVERVRSMMKVRGVSKEPGCSWIELK 660

Query: 595 GVVHEFFVRDKSRLQVRDIY--------YMLDNMWTPDSVATS 629
             VH F V D+    + +I          M D  + P SV  S
Sbjct: 661 SNVHVFVVGDQMHPCIGEIRTEILRLSKQMKDEGYQPASVTDS 703



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 109/204 (53%), Gaps = 11/204 (5%)

Query: 12  NSTQSTLL-LLRKCK---TLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF 67
           N ++ TL+ +L  C     + +  Q+H  ++  GF    ++ T LV  ++ S    +TE 
Sbjct: 310 NPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSG---VTED 366

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           AR  F     + ++ D  LW ++I  Y    + ++AL ++C M   G+  ++ + + VLK
Sbjct: 367 ARKGF----NYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLK 422

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           ACS L   ++G QIH    K   G ++ + + L ++Y +CG LE    +F +M  RD +S
Sbjct: 423 ACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIIS 482

Query: 188 YNSMIDGYVKSGNIESARELFDSM 211
           +N+MI G  ++G  + A ELF+ M
Sbjct: 483 WNAMISGLSQNGYGKEALELFEEM 506


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 187/510 (36%), Positives = 286/510 (56%), Gaps = 15/510 (2%)

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI 182
           SL+L    +L  ++   QIH  +   A  S+  L   LI  Y+       AR LFD    
Sbjct: 78  SLLLNQRPKLSPLQ---QIHAQVVTQALSSNASLTASLIHCYLCAKNHPNARILFDHYPS 134

Query: 183 RDSVS--YNSMIDGYVKSGNIESARELFDSM-----PIR----ERNLISWNSVLNGYAQL 231
                  +N MI  Y K  N +    LF  M     P++    E       +  +    L
Sbjct: 135 PSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISL 194

Query: 232 KSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGY 291
             G      + +   E +L   NS+++ C    +M+DA+ +F++M +RDV SW +++ GY
Sbjct: 195 IYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGY 254

Query: 292 AKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASL 351
           AK G +D A  LF+ MP R+ V+   M+ G++  G   +AL  F NM C+  ++P++A L
Sbjct: 255 AKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVL 314

Query: 352 VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED 411
           V VLSA A LG +D+G  IH Y++K     +     ALIDMY+KCG I+ A +VF  I  
Sbjct: 315 VCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICK 374

Query: 412 GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC 471
             V  + +MI+GL+ HGLG+ A  +  +M   ++ P++IT  G+LN C+H+GLV+EG   
Sbjct: 375 RDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSSI 434

Query: 472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYE 531
              M  +  + P+++HYGC +D+LGRAG++E A  +++ MPMEP+ VIWR LLSA R + 
Sbjct: 435 LANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHH 494

Query: 532 NLNVGEPVAKHLIGMDSSN-SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSW 590
           N+N+GE +  H+  + SS+ +   VLLSN++A LG W     +R +M +R  +  PGCSW
Sbjct: 495 NVNLGEQIISHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSW 554

Query: 591 IELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           IE+ G+VHEF V D+   Q+ +I   L+ +
Sbjct: 555 IEVNGLVHEFRVADQLHPQIVEIRNKLNEI 584



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 130/443 (29%), Positives = 228/443 (51%), Gaps = 43/443 (9%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
           Q+  LLL +   L+ + QIHA+++T     N  LT  L+  +  +   P    AR +F  
Sbjct: 75  QTFSLLLNQRPKLSPLQQIHAQVVTQALSSNASLTASLIHCYLCAKNHP---NARILFDH 131

Query: 75  YHAFREKKDPF-LWNAIIKTYSHGLDPKEALVMFC--LMLDNGVSV--DKFSASLVLKAC 129
           Y +      P  LWN +I+TYS   + +E + +F   L LD  + V  D+++ + V+ +C
Sbjct: 132 YPS---PSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSC 188

Query: 130 SRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYN 189
           S    +  G  +HG++ K  F S+L++ N +I++      +E AR++F++M  RD  S+ 
Sbjct: 189 SHQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWT 248

Query: 190 SMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGY---AQLKSGLQFAWQIFEKMP 246
           S++ GY K G ++ A ELF+ MP+  RN +SW  +++G+    +    L F    F  M 
Sbjct: 249 SLLGGYAKHGEMDRACELFNMMPV--RNDVSWAVMISGFLGCGRYPEALTF----FCNML 302

Query: 247 ERDLISWNS-----MLHGCVKCGKMDDAQAL---FDKMPKRDVVSWAN-MIDGYAKLGRV 297
             D ++ N      +L  C   G +D    +    DK+  R   + +  +ID YAK GR+
Sbjct: 303 CDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRI 362

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
           D A R+F+ + KRDV++  +M+ G   +G    AL +F  M  E  + P++ +++ VL+ 
Sbjct: 363 DCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVM-PNEITILGVLNG 421

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNG-----KHGVALIDMYSKCGSIENAIKVFEQIE-D 411
            +  G +++G +I   +E    SL G     +H    ID+  + G +E A++V + +  +
Sbjct: 422 CSHSGLVEEGSSILANME----SLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPME 477

Query: 412 GSVDHWNAMINGLAIH---GLGE 431
             +  W A+++   IH    LGE
Sbjct: 478 PDIVIWRALLSASRIHHNVNLGE 500



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 96/451 (21%), Positives = 177/451 (39%), Gaps = 84/451 (18%)

Query: 194 GYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISW 253
            +  S    S     + +PI   N  +++ +LN   +L    Q   Q+  +    +    
Sbjct: 50  SFCSSNTFPSISIPTNPIPIDLPNPQTFSLLLNQRPKLSPLQQIHAQVVTQALSSNASLT 109

Query: 254 NSMLHGCVKCGK-MDDAQALFDKMPKRD--VVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
            S++H C  C K   +A+ LFD  P     +  W  MI  Y+K+        LF      
Sbjct: 110 ASLIH-CYLCAKNHPNARILFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLF------ 162

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
                             ++ L +   MQ    + PD+ +   V+++ +    +  G  +
Sbjct: 163 ------------------LRMLTLDGPMQ----VVPDEYTFTFVITSCSHQISLIYGEIV 200

Query: 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
           H  + K  F  N   G ++I+M S    +E+A KVF Q+ +  V  W +++ G A HG  
Sbjct: 201 HGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEM 260

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
           + A +L   M       +D+++  +++     G   E L  F                 C
Sbjct: 261 DRACELFNMMPVR----NDVSWAVMISGFLGCGRYPEALTFF-----------------C 299

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL--IGMDS 548
                          N++ D  + PN+ +   +LSAC +   L+ G  +  ++  IG+  
Sbjct: 300 ---------------NMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQ 344

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
           S++ S  L+ +M+A  G  + A RV + + +R++          + G+ +    +D  R+
Sbjct: 345 SSNISTALI-DMYAKCGRIDCASRVFNGICKRDVLSFTSM----ISGLSYHGLGKDALRV 399

Query: 609 QVRDIYYMLDNMWTPDSVA-----TSCTHYG 634
                Y MLD    P+ +        C+H G
Sbjct: 400 ----FYQMLDENVMPNEITILGVLNGCSHSG 426


>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 542

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 168/462 (36%), Positives = 277/462 (59%), Gaps = 11/462 (2%)

Query: 168 GYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRE--RNLISWNSVL 225
           G + +A +LF +M   +  S+N++I  + +S   + A  LF  M   +     +++ SV 
Sbjct: 75  GNINYAYKLFVRMPNPNLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVF 134

Query: 226 NGYAQL---KSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFD----KMPK 278
             YAQL     G Q   ++ +   + D    N++++     G M +A+ +FD    ++  
Sbjct: 135 KAYAQLGHAHYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGKKLELYD 194

Query: 279 RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM 338
            DVV+  +MI GYAK G +D +R LFD+M  R  V+ N+M+ GYVRNG  M+ALE+F+ M
Sbjct: 195 HDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKM 254

Query: 339 QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS 398
           Q E +    + ++V +L+A A LG +  G  +H Y++++ F LN     A+IDMY KCGS
Sbjct: 255 QVEGF-EVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGS 313

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI-EPDDITFTGLLN 457
           +ENA++VFE      +  WN++I GLA++G    AF+   ++E   + +PD ++F G+L 
Sbjct: 314 VENAVEVFETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLT 373

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
           AC H G + +    FELM   +++EP ++HY C+VD+LG+AG +E A  LI+ MP++P+ 
Sbjct: 374 ACKHLGAINKARDYFELMMNKYEIEPSIKHYTCIVDVLGQAGLLEEAEELIKGMPLKPDA 433

Query: 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
           +IW +LLS+CR + N+ +    A+ +  ++ S++S YVL+SN+ A    + +A   R +M
Sbjct: 434 IIWGSLLSSCRKHRNVQIARRAAQRVYELNPSDASGYVLMSNVHAASNKFEEAIEQRLLM 493

Query: 578 KERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDN 619
           KE   +K PGCS IEL G VHEF    +   + ++IY++L++
Sbjct: 494 KENLTEKEPGCSSIELYGEVHEFIAGGRLHPKTQEIYHLLND 535



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 149/528 (28%), Positives = 246/528 (46%), Gaps = 75/528 (14%)

Query: 8   NQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF 67
           N PC +     +L   C T+N  +QI+  +I TG   N   +T+ + +F +SP       
Sbjct: 27  NHPCLT-----MLQNHCTTINHFHQIYPHIIKTGLTLNPIASTRAL-TFCASP------- 73

Query: 68  ARYIFFKYHAFREKKDPFL--WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
           +  I + Y  F    +P L  WN II+ +S    P+ A+ +F  ML + +     +   V
Sbjct: 74  SGNINYAYKLFVRMPNPNLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSV 133

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-- 183
            KA ++LG    G Q+HG + K+   +D F+ N +I +Y   G +  AR++FD   +   
Sbjct: 134 FKAYAQLGHAHYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGKKLELY 193

Query: 184 --DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQI 241
             D V+ NSMI GY K G I+ +R LFD M  R    +SWNS+++GY +    L  A ++
Sbjct: 194 DHDVVAINSMIMGYAKCGEIDESRNLFDDMITRTS--VSWNSMISGYVR-NGKLMEALEL 250

Query: 242 FEKMP----ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAK 293
           F KM     E    +  S+L+ C   G +   + + D + +     +V+    +ID Y K
Sbjct: 251 FNKMQVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCK 310

Query: 294 LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI 353
            G V+ A  +F+  P+R +   N+++ G   NG+  +A E F  ++    L PD  S + 
Sbjct: 311 CGSVENAVEVFETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLKPDSVSFIG 370

Query: 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
           VL+A   LG I+K         +D F L       +++ Y     IE +IK         
Sbjct: 371 VLTACKHLGAINKA--------RDYFEL-------MMNKY----EIEPSIK--------- 402

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE 473
             H+  +++ L   GL E A +L+  M    ++PD I +  LL++C     V+   +   
Sbjct: 403 --HYTCIVDVLGQAGLLEEAEELIKGM---PLKPDAIIWGSLLSSCRKHRNVQ---IARR 454

Query: 474 LMRRIHKLEP-ELQHYGCMVDILGRAGHIEAA--------RNLIEDMP 512
             +R+++L P +   Y  M ++   +   E A         NL E  P
Sbjct: 455 AAQRVYELNPSDASGYVLMSNVHAASNKFEEAIEQRLLMKENLTEKEP 502



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 102/250 (40%), Gaps = 37/250 (14%)

Query: 370 IHRYLEKDQFSLNGKHGV-ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
           I+ ++ K   +LN      AL    S  G+I  A K+F ++ + ++  WN +I   +   
Sbjct: 47  IYPHIIKTGLTLNPIASTRALTFCASPSGNINYAYKLFVRMPNPNLYSWNTIIRAFSRSS 106

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACA-----------HAGLVKEGL-----LCF 472
             + A  L ++M    I+P  +T+  +  A A           H  +VK GL     +C 
Sbjct: 107 TPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHAHYGAQLHGRVVKLGLQNDQFICN 166

Query: 473 ELM------------RRI---HKLE---PELQHYGCMVDILGRAGHIEAARNLIEDMPME 514
            ++            RR+    KLE    ++     M+    + G I+ +RNL +DM + 
Sbjct: 167 TIIYMYANGGLMSEARRVFDGKKLELYDHDVVAINSMIMGYAKCGEIDESRNLFDDM-IT 225

Query: 515 PNDVIWRTLLSA-CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV 573
              V W +++S   RN + +   E   K  +     +  + V L N  A LG     + V
Sbjct: 226 RTSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVSLLNACAHLGALQHGKWV 285

Query: 574 RSMMKERNLK 583
              +K  + +
Sbjct: 286 HDYIKRNHFE 295


>gi|359477774|ref|XP_002282129.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 691

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 185/541 (34%), Positives = 296/541 (54%), Gaps = 20/541 (3%)

Query: 73  FKYHAFREKKDPFLWNAIIKTY-SHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
           F+   FR   D   WN++I  Y S+GL  +   V   ++L + VS +   A LV     +
Sbjct: 126 FQKMPFR---DVVSWNSMISGYVSNGLIGEALRVFSGMVLKDVVSWNLVIAGLV--GVGK 180

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
           + L EE  +  G         D+     +IS     G +  AR LF+ M +RD  ++N+M
Sbjct: 181 VDLAEEFFKEMGT-------RDIASWTTMISGLASAGRIVEARGLFEDMPVRDVRAWNTM 233

Query: 192 IDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI 251
           I GY+++G IE    LF  MP  +R+  SWN ++NG  + +  +Q A ++F +MP++   
Sbjct: 234 IAGYIENGCIEIGEVLFQKMP--QRDFRSWNEMINGLVRNQR-IQDAMRLFVEMPQKCRR 290

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           SWNS++ G ++ G + +A A  +K P  D VSW N+I GY + G VD A  +F+ MP RD
Sbjct: 291 SWNSIVFGLIRNGLIKEAHAFLEKSPFSDTVSWTNLIVGYFETGEVDTAVSIFELMPARD 350

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
             A N ++ G   N +  + L+ F  M+ E    PD+A+   VL+  + L  +  G  IH
Sbjct: 351 ATAWNVIIWGLGENDHGEEGLKFFVKMK-EGGPFPDEATFTSVLTICSDLPTLHLGRQIH 409

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
             + K  F+       A++ +Y++CG+  +A+ +F  +       WN++I GLA +G G 
Sbjct: 410 AQVTKTGFNYFVAVSNAMVTLYARCGNSNSALLLFSAMRSHDFISWNSIICGLAHNGNGV 469

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            A ++  +M  + I+P+ ITF G+L+AC+HAGLV +G   F+ M+    LEP ++HY C+
Sbjct: 470 EAIEVFEKMRSIDIKPNHITFVGVLSACSHAGLVDQGKYYFDFMKYKCCLEPTIEHYTCI 529

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDV---IWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
           VD+LGR G I+ A + +  M     +V   +W  +L ACR ++N+ VGE   + ++ ++ 
Sbjct: 530 VDLLGRFGLIDEAMSFLRQMEANGVEVPASVWGAVLGACRIHKNMQVGEIAGERILEIEP 589

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608
            NS  Y++L+ M+   G   DA RV   M+E+ +KK P CSW+E+ G  H F   D S  
Sbjct: 590 HNSGVYIILAEMYLSSGKREDAERVWVRMREKGVKKQPACSWMEVNGSGHVFLSGDSSHP 649

Query: 609 Q 609
           Q
Sbjct: 650 Q 650



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 170/329 (51%), Gaps = 23/329 (6%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           D+F  N +I+  ++ G +  A ++F KM  RD VS+NSMI GYV +G I  A  +F  M 
Sbjct: 102 DIFSYNTMIAGLMKFGDINGASEIFQKMPFRDVVSWNSMISGYVSNGLIGEALRVFSGMV 161

Query: 213 IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
           +++  ++SWN V+ G   +   +  A + F++M  RD+ SW +M+ G    G++ +A+ L
Sbjct: 162 LKD--VVSWNLVIAGLVGVGK-VDLAEEFFKEMGTRDIASWTTMISGLASAGRIVEARGL 218

Query: 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
           F+ MP RDV +W  MI GY + G ++I   LF +MP+RD  + N M+ G VRN     A+
Sbjct: 219 FEDMPVRDVRAWNTMIAGYIENGCIEIGEVLFQKMPQRDFRSWNEMINGLVRNQRIQDAM 278

Query: 333 EIFDNM--QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI 390
            +F  M  +C         S   ++  + + G I +    H +LEK  FS +      LI
Sbjct: 279 RLFVEMPQKCR-------RSWNSIVFGLIRNGLIKEA---HAFLEKSPFS-DTVSWTNLI 327

Query: 391 DMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
             Y + G ++ A+ +FE +       WN +I GL  +  GE      ++M+     PD+ 
Sbjct: 328 VGYFETGEVDTAVSIFELMPARDATAWNVIIWGLGENDHGEEGLKFFVKMKEGGPFPDEA 387

Query: 451 TFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           TFT +L  C+        L    L R+IH
Sbjct: 388 TFTSVLTICSD-------LPTLHLGRQIH 409



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 142/291 (48%), Gaps = 27/291 (9%)

Query: 238 AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297
           A  +F++MP+R+ +++N+M+ G  + G   +  +LFD+MP+RD+ S+  MI G  K G +
Sbjct: 60  AQMLFDEMPQRNTVTYNAMIRGYFQNGHFGEGVSLFDEMPERDIFSYNTMIAGLMKFGDI 119

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
           + A  +F +MP RDVV+ N+M+ GYV NG   +AL +F  M  +     D  S  +V++ 
Sbjct: 120 NGASEIFQKMPFRDVVSWNSMISGYVSNGLIGEALRVFSGMVLK-----DVVSWNLVIAG 174

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVA----LIDMYSKCGSIENAIKVFEQIEDGS 413
           +  +G +D        L ++ F   G   +A    +I   +  G I  A  +FE +    
Sbjct: 175 LVGVGKVD--------LAEEFFKEMGTRDIASWTTMISGLASAGRIVEARGLFEDMPVRD 226

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE 473
           V  WN MI G   +G  E+   L  +M     + D  ++  ++N       +++ +  F 
Sbjct: 227 VRAWNTMIAGYIENGCIEIGEVLFQKMP----QRDFRSWNEMINGLVRNQRIQDAMRLFV 282

Query: 474 LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
            M +  +     + +  +V  L R G I+ A   +E  P   + V W  L+
Sbjct: 283 EMPQKCR-----RSWNSIVFGLIRNGLIKEAHAFLEKSPFS-DTVSWTNLI 327



 Score = 42.7 bits (99), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 8/166 (4%)

Query: 16  STLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           S L +     TL+   QIHA++  TGF     ++  +V  ++   C      +      +
Sbjct: 391 SVLTICSDLPTLHLGRQIHAQVTKTGFNYFVAVSNAMVTLYAR--CGN----SNSALLLF 444

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
            A R   D   WN+II   +H  +  EA+ +F  M    +  +  +   VL ACS  GL+
Sbjct: 445 SAMR-SHDFISWNSIICGLAHNGNGVEAIEVFEKMRSIDIKPNHITFVGVLSACSHAGLV 503

Query: 136 EEGLQIHGLLR-KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
           ++G      ++ K      +    C++ L  R G ++ A     +M
Sbjct: 504 DQGKYYFDFMKYKCCLEPTIEHYTCIVDLLGRFGLIDEAMSFLRQM 549


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 194/614 (31%), Positives = 314/614 (51%), Gaps = 49/614 (7%)

Query: 14  TQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFF 73
           ++S   LL   K    + +IHA MI TG   + +   KL+ S++        E AR +F 
Sbjct: 7   SKSLKTLLITSKDEPTIAKIHALMILTGIFGHGNSNAKLIQSYAR---LGHIESARQVFD 63

Query: 74  KYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLG 133
           K      +     WNA+I  YS      EAL ++  M   GV  D  + ++VLKAC+R  
Sbjct: 64  K----SPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSL 119

Query: 134 LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMID 193
            +  G +         +G D+F+   +++LY +CG                         
Sbjct: 120 DLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCG------------------------- 154

Query: 194 GYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDL 250
                  ++ A  +FD M    R+L+ W +++ G AQ    +  +    Q+ +K  E D 
Sbjct: 155 ------KMDEAMRVFDKMG--RRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDG 206

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRD----VVSWANMIDGYAKLGRVDIARRLFDE 306
           +    ++  C   G      ++   M ++D    V+   +++D YAK G +++A  +F  
Sbjct: 207 VVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRR 266

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           M  ++V++ +A++ G+ +NG++  AL++  +MQ   Y  PD  SLV VL A +Q+G +  
Sbjct: 267 MLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGY-KPDSVSLVSVLLACSQVGFLKL 325

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G ++H Y+ + +   +     A+IDMYSKCGS+  A  VF+QI       WNA+I    I
Sbjct: 326 GKSVHGYIVR-RLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGI 384

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           HG GE A  L ++M   +++PD  TF  LL+A +H+GLV++G   F +M   +K++P  +
Sbjct: 385 HGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEK 444

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HY CMVD+L RAG +E A+ LIE M  EP   IW  LLS C N+    +GE  AK ++ +
Sbjct: 445 HYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLEL 504

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           +  +   Y L+SN FA    W++   VR +MK+  +KK+PG S +E+ G +H F + DKS
Sbjct: 505 NPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKS 564

Query: 607 RLQVRDIYYMLDNM 620
             Q  +I  +L  +
Sbjct: 565 HHQYEEIMQVLGKL 578


>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 527

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 176/516 (34%), Positives = 286/516 (55%), Gaps = 12/516 (2%)

Query: 88  NAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRK 147
           N +I+T +      + + ++  + + G+  D F+   VL+A   L +  EG + H    K
Sbjct: 15  NLLIRTLARRSSHADVMAVYYDLRERGLVADSFTYPFVLRAIGALQISVEGRKAHAATLK 74

Query: 148 VAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAREL 207
             F  D +  + L+ +Y   G LE AR++FD+M  R  V +N M+  YV+ G    A  L
Sbjct: 75  TGFRWDAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVAL 134

Query: 208 FDSMPIRERNLISWNSV--LNGYAQLKSG--LQFAWQIFEKMPERDLISW---NSMLHGC 260
            + M   ER  ++ + V  L           L    +I   M      S    N++L   
Sbjct: 135 AEEM---ERGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMDGVTGFSLPVANALLDMY 191

Query: 261 VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
           VK G +++A  LF+KMP R+VVSW  ++ GYA  G+VD AR LF +  ++D++   AM+ 
Sbjct: 192 VKNGCLEEAVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMIN 251

Query: 321 GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
            YV++G  ++AL +F +MQ    + PD  ++V +L+  A LG +D+G  IH++ E     
Sbjct: 252 AYVQHGCFIEALSLFRDMQMH-QIEPDRFTVVTLLTCCANLGALDQGQLIHQFAEGRNMK 310

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440
           L+   G ALIDMY+KCG +E +++VFE++E      W A+I GLA +G    A +L  +M
Sbjct: 311 LDAVLGTALIDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLATNGQAGRALELFEDM 370

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500
           ER   +PD +TF G+L+AC H GLV EG   F  M+ ++++ P ++HY C+V++LGRAG 
Sbjct: 371 ERSEAKPDSVTFIGVLSACCHGGLVDEGRKQFRAMKEVYRIRPRVEHYSCLVNLLGRAGQ 430

Query: 501 IEAARNLIEDMPMEPNDV-IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559
           ++ A  LI+ +P+  + + ++  L++AC+   N+ + E + K +           +L+SN
Sbjct: 431 LDEAEKLIKSIPINKDAMPLFGALITACKAQGNVKMSERLTKRIGKQGYQIPDVNLLMSN 490

Query: 560 MFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG 595
           ++A    W D  RVRS M   ++KK  GCS IE++G
Sbjct: 491 VYATASRWEDVVRVRSKMAHPSVKKNAGCSLIEVKG 526



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 100/225 (44%), Gaps = 17/225 (7%)

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           MP R+   CN ++    R       + ++ +++ E  L  D  +   VL AI  L    +
Sbjct: 9   MPLRE---CNLLIRTLARRSSHADVMAVYYDLR-ERGLVADSFTYPFVLRAIGALQISVE 64

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G   H    K  F  +     +L+DMY+  G +E A KVF+++   +V  WN M+     
Sbjct: 65  GRKAHAATLKTGFRWDAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVR 124

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
            G    A  L  EMER  + PD +T    L AC+ AG +  G       R+IH     + 
Sbjct: 125 CGRNTEAVALAEEMERGRLTPDRVTLLTALTACSRAGDLSLG-------RKIHAYMDGVT 177

Query: 487 HYG-----CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
            +       ++D+  + G +E A NL E MP   N V W TL+S 
Sbjct: 178 GFSLPVANALLDMYVKNGCLEEAVNLFEKMPSR-NVVSWTTLVSG 221



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 108/238 (45%), Gaps = 8/238 (3%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +KD  +W A+I  Y       EAL +F  M  + +  D+F+   +L  C+ LG +++G  
Sbjct: 240 EKDLIMWTAMINAYVQHGCFIEALSLFRDMQMHQIEPDRFTVVTLLTCCANLGALDQGQL 299

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           IH          D  L   LI +Y +CG++E + ++F++M  RD+ ++ ++I G   +G 
Sbjct: 300 IHQFAEGRNMKLDAVLGTALIDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLATNGQ 359

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLISWNSMLHG 259
              A ELF+ M   E    S   +    A    GL     + F  M E   I      + 
Sbjct: 360 AGRALELFEDMERSEAKPDSVTFIGVLSACCHGGLVDEGRKQFRAMKEVYRIRPRVEHYS 419

Query: 260 CV-----KCGKMDDAQALFDKMP--KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
           C+     + G++D+A+ L   +P  K  +  +  +I      G V ++ RL   + K+
Sbjct: 420 CLVNLLGRAGQLDEAEKLIKSIPINKDAMPLFGALITACKAQGNVKMSERLTKRIGKQ 477


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  308 bits (788), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 176/470 (37%), Positives = 258/470 (54%), Gaps = 28/470 (5%)

Query: 169 YLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM------------PIR-- 214
           +L +A+ +F  +       YNS+I     S     A  L+ +M            P    
Sbjct: 115 FLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIK 174

Query: 215 --ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
               + ++W  +L     +KSG            E D    +S++H       +  A+ L
Sbjct: 175 ACNESSVTWFGLLVHTHVVKSGF-----------ECDSYIVSSLIHLYANGKDLGAAKQL 223

Query: 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
           F+    RDVVSW  MIDGY K   +  AR +FD M  RDV++ N M+ GY   G   +AL
Sbjct: 224 FNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEAL 283

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDM 392
            +FD M+  + + P +A++V +LSA A LG +DKG+ +H Y+  ++  +N   G AL+DM
Sbjct: 284 ALFDQMRA-VGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDM 342

Query: 393 YSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITF 452
           Y+KCG I  A +VF  +E   V  WN +I G+AIHG  + A  L  EM+   +EP+DITF
Sbjct: 343 YAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITF 402

Query: 453 TGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP 512
             +L+AC+HAG+V EG    + M   + +EP+++HYGC++D+L RAG +E A  LI  MP
Sbjct: 403 VAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMP 462

Query: 513 MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARR 572
           MEPN      LL  CR + N  +GE V K LI +   +S  Y+LLSN++A    W+DAR+
Sbjct: 463 MEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARK 522

Query: 573 VRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWT 622
           VR++MK   + K+PG S IEL+G+VH F   D S  +   IY  L+ + T
Sbjct: 523 VRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHT 572



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 134/450 (29%), Positives = 227/450 (50%), Gaps = 31/450 (6%)

Query: 8   NQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF 67
           N P N     L L   CKTL  + Q+HA++IT     + +   +L A  S S  +P   F
Sbjct: 63  NPPSNP--QILSLFNPCKTLRHLKQVHAQIIT-----HHNSPFQLSALASLSALSPFPTF 115

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
             Y    +H   +   P L+N++I+  S    P EAL ++  ML +G+  D  +   V+K
Sbjct: 116 LAYAKTIFHHL-QNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIK 174

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           AC+   +   GL +H  + K  F  D ++ + LI LY     L  A+QLF+    RD VS
Sbjct: 175 ACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVS 234

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM-- 245
           +N+MIDGYVK   +  AR +FD M  R+  +ISWN+++NGYA +      A  +F++M  
Sbjct: 235 WNAMIDGYVKHVEMGHARMVFDRMVCRD--VISWNTMINGYA-ICGKPNEALALFDQMRA 291

Query: 246 ----PERDLISWNSMLHGCVKCGKMDDAQALF----DKMPKRDVVSWANMIDGYAKLGRV 297
               P    +   S+L  C   G +D    L     D   + + +    ++D YAK G++
Sbjct: 292 VGVKPTEATVV--SLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKI 349

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
            +A ++F+ M  +DV+A N ++ G   +G   +A ++F  M+ E  + P+D + V +LSA
Sbjct: 350 SLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMK-EAGVEPNDITFVAILSA 408

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGK--HGVALIDMYSKCGSIENAIKVFEQIE-DGSV 414
            +  G +D+G  +   +    + +  K  H   +ID+ ++ G +E A+++   +  + + 
Sbjct: 409 CSHAGMVDEGQKLLDCMS-SSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNP 467

Query: 415 DHWNAMINGLAIHG---LGELAFDLLMEME 441
               A++ G  IHG   LGE+    L+ ++
Sbjct: 468 SALGALLGGCRIHGNFELGEMVGKRLINLQ 497


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  308 bits (788), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 174/501 (34%), Positives = 272/501 (54%), Gaps = 41/501 (8%)

Query: 140 QIHGLLRKVAFGSDLFLQNCLI--SLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           Q+H  + K    +D  +   L+  S       L++AR+LF      D   +N++I G  +
Sbjct: 23  QVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPDVFMHNTLIRGLAE 82

Query: 198 SGNIESARELFDSM------PIRERNLISWNSVLNGYAQLKSGLQ--------------- 236
           S   +++   F  M      P+   +          Y  L+SG+Q               
Sbjct: 83  SDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVHGLDTHLF 142

Query: 237 ----------------FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRD 280
                           FA ++FE+M E ++++WN+++  C +CG +  A  +F++MP R+
Sbjct: 143 VGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFRN 202

Query: 281 VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQC 340
           + SW  M+ GY K G +++AR+LF EMP +D V+ + M+ G+  NG+  +A   F  +Q 
Sbjct: 203 LTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQ- 261

Query: 341 ELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE 400
           ++ + P++ SL   LSA A  G I+ G  +H ++EK  F        AL+D YSKCG++ 
Sbjct: 262 QVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVG 321

Query: 401 NAIKVFEQI-EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
            A  VFE++ E  S+  W +MI GLA+HG GE A  L  EME   I PD I F  +L AC
Sbjct: 322 MARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYAC 381

Query: 460 AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI 519
           +HAGL+++G   F  M+ I+ +EP ++HYGCMVD+ GRAG ++ A   I  MP+ P  +I
Sbjct: 382 SHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAII 441

Query: 520 WRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579
           WRTLL AC  + N+ + E V + L  +D +NS  +VLLSN++A  G W D   VR  M +
Sbjct: 442 WRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTD 501

Query: 580 RNLKKLPGCSWIELEGVVHEF 600
           + + K PG S IE++ +++ F
Sbjct: 502 QRMNKTPGWSMIEVDKIMYSF 522



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/476 (26%), Positives = 236/476 (49%), Gaps = 60/476 (12%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           LL  C++L ++ Q+HA +  TG   +  +  KL+   + S    L ++AR +F  +    
Sbjct: 11  LLTNCRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDAL-DYARRLFLHF---- 65

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDN-GVSVDKFSASLVLKACSRLGLIEEG 138
              D F+ N +I+  +    P+ +L+ F  M       +D FS + +LKA +    +E G
Sbjct: 66  PNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESG 125

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQ----------------------- 175
           +Q+H         + LF+   L+S+Y  CG++ FA++                       
Sbjct: 126 IQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRC 185

Query: 176 --------LFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNG 227
                   +F++M  R+  S+N M+ GY K+G +E AR+LF  MP+++   +SW++++ G
Sbjct: 186 GDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDD--VSWSTMIVG 243

Query: 228 YAQLKSGLQF-AWQIFEKMPERDL----ISWNSMLHGCVKCGKMDDAQALFDKMPKRD-- 280
           +A   +G  + A+  F ++ +  +    +S    L  C   G ++  + L   + K    
Sbjct: 244 FAH--NGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFL 301

Query: 281 -VVSWAN-MIDGYAKLGRVDIARRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDN 337
            +VS  N ++D Y+K G V +AR +F+ MP KR +V+  +M+ G   +GY  +A+++F  
Sbjct: 302 WMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHE 361

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG--KHGVALIDMYSK 395
           M+ E  + PD  + + +L A +  G I+KG   + Y  KD +++    +H   ++D+Y +
Sbjct: 362 ME-ESGIRPDGIAFISILYACSHAGLIEKGYE-YFYKMKDIYNIEPAIEHYGCMVDLYGR 419

Query: 396 CGSIENAIKVFEQIED-GSVDHWNAMINGLAIHGLGELAFDLLMEMERLS-IEPDD 449
            G ++ A +    +    +   W  ++   +IHG  +LA  +    ERLS ++P++
Sbjct: 420 AGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERV---KERLSELDPNN 472


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  308 bits (788), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 174/510 (34%), Positives = 284/510 (55%), Gaps = 29/510 (5%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           VL+ C+ L  I++G +IH +++      D  L + L+ +YV CG L   R++FDK+    
Sbjct: 107 VLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEK 166

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244
              +N +++GY K GN   +  LF  M    R L        G  +++S    A ++F++
Sbjct: 167 VFLWNLLMNGYAKIGNFRESLSLFKRM----REL--------GIRRVES----ARKLFDE 210

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKM----PKRDVVSWAN--------MIDGYA 292
           + +RD+ISWNSM+ G V  G  +    LF++M       D+ +  +        ++D Y+
Sbjct: 211 LGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYS 270

Query: 293 KLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLV 352
           K G ++ A ++F+ M +R VV+  +M+ GY R G S  ++ +F  M+ E  L P+  ++ 
Sbjct: 271 KSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKE-DLFPNSITMA 329

Query: 353 IVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG 412
            +L A A L  +++G  IH ++ ++ FSL+     AL+DMY KCG++  A  +F+ I + 
Sbjct: 330 CILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEK 389

Query: 413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCF 472
            +  W  MI G  +HG G  A     EM    IEPD+++F  +L AC+H+GL+ EG   F
Sbjct: 390 DLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFF 449

Query: 473 ELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYEN 532
            +MR    +EP+ +HY C+VD+L RAG++  A   I+ MP+EP+  IW  LL  CR Y +
Sbjct: 450 NMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHD 509

Query: 533 LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           + + E VA+H+  ++  N+  YVLL+N++A    W + +++R  +  R L+K PGCSWIE
Sbjct: 510 VKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIE 569

Query: 593 LEGVVHEFFVRDKSRLQVRDIYYMLDNMWT 622
           ++G VH F   D S      I  +L    T
Sbjct: 570 IKGKVHIFVTGDSSHPLANKIELLLKKTRT 599



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 110/361 (30%), Positives = 179/361 (49%), Gaps = 53/361 (14%)

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKS---GLQFAWQIFEK 244
           YN  I  + + GN+  A EL +  P  +  L ++ SVL   A LKS   G +    I   
Sbjct: 71  YNIEICRFCELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSN 130

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG--------- 295
             E D +  + ++   V CG + + + +FDK+    V  W  +++GYAK+G         
Sbjct: 131 DVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLF 190

Query: 296 ---------RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP 346
                    RV+ AR+LFDE+  RDV++ N+M+ GYV NG S K L++F+ M   L ++ 
Sbjct: 191 KRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLL-LGINT 249

Query: 347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVF 406
           D A++V V                       + +LN      L+DMYSK G++ +AI+VF
Sbjct: 250 DLATMVSV-----------------------ELTLNN----CLLDMYSKSGNLNSAIQVF 282

Query: 407 EQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVK 466
           E + + SV  W +MI G A  GL +++  L  EME+  + P+ IT   +L ACA    ++
Sbjct: 283 ETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALE 342

Query: 467 EGL-LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLS 525
            G  +   ++R    L+  + +   +VD+  + G +  AR L+ DM  E + V W  +++
Sbjct: 343 RGQEIHGHILRNGFSLDRHVAN--ALVDMYLKCGALGLAR-LLFDMIPEKDLVSWTVMIA 399

Query: 526 A 526
            
Sbjct: 400 G 400



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 103/230 (44%), Gaps = 11/230 (4%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           W ++I  Y+       ++ +F  M    +  +  + + +L AC+ L  +E G +IHG + 
Sbjct: 293 WTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHIL 352

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           +  F  D  + N L+ +Y++CG L  AR LFD +  +D VS+  MI GY   G    A  
Sbjct: 353 RNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIA 412

Query: 207 LFDSMPIR--ERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCV-- 261
            F+ M     E + +S+ S+L  YA   SG L   W  F  M     I   S  + C+  
Sbjct: 413 AFNEMRNSGIEPDEVSFISIL--YACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVD 470

Query: 262 ---KCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
              + G +  A      MP + D   W  ++ G      V +A ++ + +
Sbjct: 471 LLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHV 520



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 95/235 (40%), Gaps = 46/235 (19%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L  C +L  +    +IH  ++  GF  + H+   LV  +    C  L   AR +F    
Sbjct: 331 ILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLK--CGALG-LARLLF---- 383

Query: 77  AFREKKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
               +KD   W  +I  Y  HG    EA+  F  M ++G+  D+ S   +L ACS  GL+
Sbjct: 384 DMIPEKDLVSWTVMIAGYGMHGYG-SEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLL 442

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
           +EG     ++R           NC I                       S  Y  ++D  
Sbjct: 443 DEGWGFFNMMR----------NNCCIE--------------------PKSEHYACIVDLL 472

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNG---YAQLKSGLQFAWQIFEKMPE 247
            ++GN+  A +    MPI E +   W ++L G   Y  +K   + A  +FE  PE
Sbjct: 473 ARAGNLSKAYKFIKMMPI-EPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPE 526


>gi|297826975|ref|XP_002881370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327209|gb|EFH57629.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  308 bits (788), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 178/518 (34%), Positives = 284/518 (54%), Gaps = 39/518 (7%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           V+    +LG + E  +   L  +V    ++     ++S Y+R   L  A  LF +M  R+
Sbjct: 83  VITGYIKLGNMREARE---LFDRVDSRKNVVTWTAMVSGYLRSKQLSVAETLFQEMPERN 139

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244
            VS+N+MIDGY +SG I+ A ELFD MP  ERN +SWN+++    Q +  +  A  +FE+
Sbjct: 140 IVSWNTMIDGYAQSGRIDKALELFDEMP--ERNTVSWNTMIKALVQ-RGRIDEAMNLFER 196

Query: 245 MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
           MP +D+ISW +M+ G  K GK+D+A+ LFD MP+R+++SW  MI GY    R+D A +LF
Sbjct: 197 MPIKDVISWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYTYNNRIDEADQLF 256

Query: 305 -------------------------------DEMPKRDVVACNAMMGGYVRNGYSMKALE 333
                                          D MP+++V++  AM+ GYV N  + +AL+
Sbjct: 257 QVMPERDFASWNTMITGFIRNREINRACGLFDRMPQKNVISWTAMITGYVENKENEEALK 316

Query: 334 IFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMY 393
           +F  M  +  + P+  + V +LSA + L  + +G  IH+ + K     N     ALI+MY
Sbjct: 317 VFSKMLRDGCVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQENEVVTSALINMY 376

Query: 394 SKCGSIENAIKVFEQ--IEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDIT 451
           SK G +  A K+F+   +    +  WN+MI   A HG G+ A ++  +M +   +P ++T
Sbjct: 377 SKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYDQMRKHGFKPSEVT 436

Query: 452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM 511
           +  LL AC+HAGLV++G+  F+ + R   L    +HY C+VD+ GRAG ++   N I   
Sbjct: 437 YLNLLFACSHAGLVEKGMEFFKELVRDESLPLREEHYTCLVDLCGRAGRLKDVLNFINCD 496

Query: 512 PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDAR 571
               +   +  +LSAC  +  +++ + V K ++   S ++ +YV++SN++A  G    A 
Sbjct: 497 DARLSRSFYGAILSACNVHSEVSIAKEVVKKVLETGSDDAGTYVMMSNIYAASGKREKAA 556

Query: 572 RVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQ 609
            +R  MKE+ LKK PGCSW+++    H F V DKS  Q
Sbjct: 557 EMRMKMKEKGLKKQPGCSWVKIGNQTHLFVVGDKSHPQ 594



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 216/397 (54%), Gaps = 21/397 (5%)

Query: 136 EEGLQIHGLLRKVAFGSD---LFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
           E  +Q+  L+R +   S    +     LI    + G L  AR+LFD +  RD V++  +I
Sbjct: 25  ERSVQLRNLVRSIYSSSSKPRVPRPEWLIGKLCKVGKLAEARKLFDGLPERDVVTWTDVI 84

Query: 193 DGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLIS 252
            GY+K GN+  ARELFD +  R +N+++W ++++GY + K  L  A  +F++MPER+++S
Sbjct: 85  TGYIKLGNMREARELFDRVDSR-KNVVTWTAMVSGYLRSKQ-LSVAETLFQEMPERNIVS 142

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
           WN+M+ G  + G++D A  LFD+MP+R+ VSW  MI    + GR+D A  LF+ MP +DV
Sbjct: 143 WNTMIDGYAQSGRIDKALELFDEMPERNTVSWNTMIKALVQRGRIDEAMNLFERMPIKDV 202

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           ++  AM+ G  +NG   +A  +FD M        +  S   +++       ID+   + +
Sbjct: 203 ISWTAMVDGLAKNGKVDEARRLFDCMP-----ERNIISWNAMITGYTYNNRIDEADQLFQ 257

Query: 373 YL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
            + E+D  S N      +I  + +   I  A  +F+++   +V  W AMI G   +   E
Sbjct: 258 VMPERDFASWN-----TMITGFIRNREINRACGLFDRMPQKNVISWTAMITGYVENKENE 312

Query: 432 LAFDLLMEMERLS-IEPDDITFTGLLNACAH-AGLVKEGLLCFELMRRIHKLEPELQHYG 489
            A  +  +M R   ++P+  T+  +L+AC+  AGLV EG    +L+ +    E E+    
Sbjct: 313 EALKVFSKMLRDGCVKPNVGTYVSILSACSDLAGLV-EGQQIHQLISKSVHQENEVV-TS 370

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLS 525
            ++++  ++G + AAR + ++  +   D+I W ++++
Sbjct: 371 ALINMYSKSGELIAARKMFDNGLVCQRDLISWNSMIA 407



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 3/134 (2%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG-VSVDKFSASLVLKACSRLGLIEEGL 139
           +K+   W A+I  Y    + +EAL +F  ML +G V  +  +   +L ACS L  + EG 
Sbjct: 292 QKNVISWTAMITGYVENKENEEALKVFSKMLRDGCVKPNVGTYVSILSACSDLAGLVEGQ 351

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI--RDSVSYNSMIDGYVK 197
           QIH L+ K     +  + + LI++Y + G L  AR++FD   +  RD +S+NSMI  Y  
Sbjct: 352 QIHQLISKSVHQENEVVTSALINMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAH 411

Query: 198 SGNIESARELFDSM 211
            G+ + A E++D M
Sbjct: 412 HGHGKEAIEMYDQM 425



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 6/141 (4%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           QIH  +  +   +N  +T+ L+  +S S        AR +F   +    ++D   WN++I
Sbjct: 352 QIHQLISKSVHQENEVVTSALINMYSKSGELIA---ARKMF--DNGLVCQRDLISWNSMI 406

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ-IHGLLRKVAF 150
             Y+H    KEA+ M+  M  +G    + +   +L ACS  GL+E+G++    L+R  + 
Sbjct: 407 AVYAHHGHGKEAIEMYDQMRKHGFKPSEVTYLNLLFACSHAGLVEKGMEFFKELVRDESL 466

Query: 151 GSDLFLQNCLISLYVRCGYLE 171
                   CL+ L  R G L+
Sbjct: 467 PLREEHYTCLVDLCGRAGRLK 487


>gi|218194384|gb|EEC76811.1| hypothetical protein OsI_14939 [Oryza sativa Indica Group]
          Length = 540

 Score =  308 bits (788), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 194/561 (34%), Positives = 301/561 (53%), Gaps = 41/561 (7%)

Query: 64  LTEFARYIFFKYHAFREK--KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFS 121
           L E   +   + H F      DP L  A I        P+ AL  F  +   G+      
Sbjct: 11  LGELHAHFLRRGHPFPPAAHPDPDLDRAYISAIRAATAPRLALAAFACLRRVGLPAPGRR 70

Query: 122 A-SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
           A   +L+A +           HGL  +V    D F+   L+  Y  CG +E AR++FD M
Sbjct: 71  ALPSLLRAIALARFPGTAGAAHGLAFRVGAEVDGFVGTALVRAYAACGRVEDARKVFDGM 130

Query: 181 GIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRER---NLISWNSVLNGYAQLKSGLQF 237
             RD V++  M+D Y ++ N E A  LF SM  R R   + +   +VL+  A  ++ L+F
Sbjct: 131 PDRDLVAWGVMLDCYCQARNYEEALLLFHSMK-RSRVVPDQVIIATVLSTCAHTRN-LRF 188

Query: 238 AWQIFEKMPERD-LISWN---SMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAK 293
              I   M   D LI      ++++    C  M+ A+ L++++ ++D+V    M+ GYAK
Sbjct: 189 GKAIHSYMLVSDALIDAQVSCALMNMYASCADMEMAEKLYNRVSEKDIVLSTTMVYGYAK 248

Query: 294 LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI 353
            G+V+IA  +F+ MP++DVV+ +AM+ GY  +   M+AL +F +MQ    + PD+ +++ 
Sbjct: 249 NGKVEIAHSIFNGMPEKDVVSWSAMIAGYAESSKPMEALNLFHDMQ-RSGVQPDEITMLS 307

Query: 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
           +L                              G ALIDM+SKCGS+  A+ VF  +   +
Sbjct: 308 ILPI----------------------------GNALIDMFSKCGSLTLALDVFNAMPQKN 339

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE 473
           V  W ++I   A+HG G  A  L   M+   I+P+ +TF GLL AC HAGLV+EG L F+
Sbjct: 340 VVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFK 399

Query: 474 LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENL 533
           +M + +++EP  +HYGCMVD+LGRA  +  A +LI+ M + PN VIW +LL+ACR + +L
Sbjct: 400 IMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMHGDL 459

Query: 534 NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
            +G   AK ++ +D ++  + VLLSN++A  G WND + VR +MK +   K  GCSW+EL
Sbjct: 460 ELGAFAAKKILELDPNHGGAQVLLSNIYAEYGNWNDVKEVRGVMKVQGTWKKKGCSWMEL 519

Query: 594 EGVVHEFFVRDKSRLQVRDIY 614
            G VH+F V  +  L+++  +
Sbjct: 520 NGSVHQFAVGGEKILEMKGSF 540


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 205/638 (32%), Positives = 328/638 (51%), Gaps = 67/638 (10%)

Query: 1   MFVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP 60
           +F + N N   +     L LL++C +   + QIH +       K  HL ++ ++      
Sbjct: 8   IFKTINTNTNHSPIFLLLSLLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQSIS------ 61

Query: 61  CTPLTEFARYIFFKYHAFREKKDPFLWNAIIK-TYSHGLDPKEALVMFCLMLDNGVSVDK 119
              L +F        H      D + +N +++ T +   D    L ++  M    +S + 
Sbjct: 62  ---LKDFTYSTLIFSHITPHPND-YAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNN 117

Query: 120 FSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK 179
           F+   V  AC+ L  I                              R  + E  +   D 
Sbjct: 118 FTFPFVFLACANLEEIR---------------------------MARLAHCEVFKLGLDN 150

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAW 239
               D  + NSM+  Y + G    AR++FD   I E++L+SWNS+L+GYA+L    + A 
Sbjct: 151 ----DHHTVNSMVTMYFRCGENGVARKVFDE--ITEKDLVSWNSLLSGYAKLGFARE-AV 203

Query: 240 QIFEKMPER-----DLISWNSMLHGCVKCGKMDDAQ----ALFDKMPKRDVVSWANMIDG 290
           ++F ++ E      D +S  S+L  C + G ++  +     + ++  K +    + +I  
Sbjct: 204 EVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISM 263

Query: 291 YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
           Y+K G +  +RR+FD MP RD +  NA +  Y +NG + +A+ +F +M+ E  + P+  +
Sbjct: 264 YSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMK-ENGVDPNKVT 322

Query: 351 LVIVLSAIAQLGHIDKG-----VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKV 405
           L  VLSA A +G +D G      A HR L+ D F        ALIDMY+KCGS+E+A +V
Sbjct: 323 LTAVLSACASIGALDLGKQMDEYATHRGLQHDIFV-----ATALIDMYAKCGSLESAQRV 377

Query: 406 FEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM--ERLSIEPDDITFTGLLNACAHAG 463
           F  +   +   WNAMI+ LA HG  + A  L   M  E  S  P+DITF  LL+AC HAG
Sbjct: 378 FNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAG 437

Query: 464 LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTL 523
           LV EG   F++M  +  L P+++HY CMVD+L RAGH+  A ++IE MP +P++V    L
Sbjct: 438 LVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGAL 497

Query: 524 LSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583
            SAC+  +N+++GE V + L+ +D SNS +Y++ S ++  L MW+DA R+R++M+E  + 
Sbjct: 498 HSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMRENGVT 557

Query: 584 KLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMW 621
           K PGCSWIE+   + EF   D   L   D+  ++D ++
Sbjct: 558 KTPGCSWIEVGNQLREFLSGDGLTLDSIDVRNIIDLLY 595


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 152/357 (42%), Positives = 232/357 (64%), Gaps = 1/357 (0%)

Query: 262 KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
           K G +  AQ +FD+MP+R +VS   MI  YAK G V+ AR LFD M +RD+V+ N M+ G
Sbjct: 173 KGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDG 232

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL 381
           Y ++G+   AL +F  +  E    PD+ ++V  LSA +Q+G ++ G  IH +++  +  L
Sbjct: 233 YAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRL 292

Query: 382 NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEME 441
           N K    LIDMYSKCGS+E A+ VF       +  WNAMI G A+HG  + A  L  EM+
Sbjct: 293 NVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQ 352

Query: 442 RLS-IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500
            ++ ++P DITF G L ACAHAGLV EG+  FE M + + ++P+++HYGC+V +LGRAG 
Sbjct: 353 GITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQ 412

Query: 501 IEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560
           ++ A   I++M M+ + V+W ++L +C+ + +  +G+ +A++LIG++  NS  YVLLSN+
Sbjct: 413 LKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNI 472

Query: 561 FAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           +A +G +    +VR++MKE+ + K PG S IE+E  VHEF   D+   + ++IY ML
Sbjct: 473 YASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTML 529



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/430 (28%), Positives = 227/430 (52%), Gaps = 40/430 (9%)

Query: 19  LLLRKCKTLNDVNQIHARMITTGFIKNTH---LTTKLVASFSSSPCTPLTEFARYIFFKY 75
           +L+ K +++++V QIHA ++    + +     L  KL  +++S            I    
Sbjct: 34  VLIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHG---------KIRHSL 84

Query: 76  HAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLG 133
             F +  DP  FL+ A I T S      +A +++  +L + ++ ++F+ S +LK+CS   
Sbjct: 85  ALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCS--- 141

Query: 134 LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMID 193
             + G  IH  + K   G D ++   L+ +Y + G +  A+++FD+M  R  VS  +MI 
Sbjct: 142 -TKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMIT 200

Query: 194 GYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM-----PER 248
            Y K GN+E+AR LFDSM   ER+++SWN +++GYAQ       A  +F+K+     P+ 
Sbjct: 201 CYAKQGNVEAARALFDSMC--ERDIVSWNVMIDGYAQ-HGFPNDALMLFQKLLAEGKPKP 257

Query: 249 DLISWNSMLHGCVKCGKMDDAQ--ALFDKMP--KRDVVSWANMIDGYAKLGRVDIARRLF 304
           D I+  + L  C + G ++  +   +F K    + +V     +ID Y+K G ++ A  +F
Sbjct: 258 DEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVF 317

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
           ++ P++D+VA NAM+ GY  +GYS  AL +F+ MQ    L P D + +  L A A  G +
Sbjct: 318 NDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLV 377

Query: 365 DKGVAIHRYLEKDQFSLNGK--HGVALIDMYSKCGSIENAIKVFEQIEDGSVDH----WN 418
           ++G+ I   + + ++ +  K  H   L+ +  + G ++ A   +E I++ ++D     W+
Sbjct: 378 NEGIRIFESMGQ-EYGIKPKIEHYGCLVSLLGRAGQLKRA---YETIKNMNMDADSVLWS 433

Query: 419 AMINGLAIHG 428
           +++    +HG
Sbjct: 434 SVLGSCKLHG 443


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 165/445 (37%), Positives = 260/445 (58%), Gaps = 9/445 (2%)

Query: 176 LFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPI--RERNLISWNSVLNGYAQLKS 233
            F+     D+  +N MI G   S   + +  L+  M       N  ++  +L   + L S
Sbjct: 66  FFNGFDRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNL-S 124

Query: 234 GLQFAWQIFEKMPE----RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMID 289
             Q   QI   + +     D+ + NS+++     G    A  LFD++ + D VSW ++I 
Sbjct: 125 AFQETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIK 184

Query: 290 GYAKLGRVDIARRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD 348
           GY K G +D+A  LF +MP K + ++   M+ GYV+ G + +AL++F  MQ    + PD+
Sbjct: 185 GYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQ-NSNVPPDN 243

Query: 349 ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ 408
            SL   LSA +QLG +++G  IH Y  K +  ++      LIDMY+KCG +E A+ VF+ 
Sbjct: 244 VSLASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKN 303

Query: 409 IEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
           ++  SV  W A+I+G A HGLG  A    +EM+ + ++P+ ITFT +L AC++ GLV+EG
Sbjct: 304 MKTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEG 363

Query: 469 LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACR 528
              F  + R + L+P ++HYGCMVD+LGRAG +  A   I+ MP++PN VIW +LL AC+
Sbjct: 364 KSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQ 423

Query: 529 NYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGC 588
            ++N+ +GE + + LI MDS++   YV ++N+ A    W+ A   R +M+E+ + K+PGC
Sbjct: 424 IHKNIELGEKIGEILIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGC 483

Query: 589 SWIELEGVVHEFFVRDKSRLQVRDI 613
           S I LEG  HEF   D+S  ++++I
Sbjct: 484 SAISLEGTTHEFLAGDRSHAEIQEI 508



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 129/441 (29%), Positives = 229/441 (51%), Gaps = 24/441 (5%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
           +  L  L+KC T  ++ QIHARM+ +G +++ +  TK ++   SS     + +A  +FF 
Sbjct: 12  EHNLSCLQKCPTEVELKQIHARMLKSGLLQDPYAMTKFLSFCLSSS---FSSYAHDVFF- 67

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
            + F ++ D FLWN +I+  S    P  +L+++  ML      + ++   +LKACS L  
Sbjct: 68  -NGF-DRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSA 125

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
            +E  QIH  + K  +G D++  N LI+ Y   G  + A  LFD++   D+VS+NS+I G
Sbjct: 126 FQETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKG 185

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPER----D 249
           YVK+G ++ A  LF  MP  + N ISW ++++GY Q  +G+ + A Q+F +M       D
Sbjct: 186 YVKAGEMDMALTLFRKMP-EKNNAISWTTMISGYVQ--AGMNKEALQLFHEMQNSNVPPD 242

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFD 305
            +S  S L  C + G ++  + +     K     D V    +ID YAK G ++ A  +F 
Sbjct: 243 NVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFK 302

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
            M  + V    A++ GY  +G   +A+  F  MQ  + + P+  +   VL+A +  G ++
Sbjct: 303 NMKTKSVQVWTALISGYAYHGLGREAISKFLEMQ-NMGVKPNAITFTAVLTACSYTGLVE 361

Query: 366 KGVAIHRYLEKD-QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMING 423
           +G ++   +E+D       +H   ++D+  + G +  A +  +++    +   W +++  
Sbjct: 362 EGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKA 421

Query: 424 LAIHG---LGELAFDLLMEME 441
             IH    LGE   ++L+EM+
Sbjct: 422 CQIHKNIELGEKIGEILIEMD 442


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 203/661 (30%), Positives = 325/661 (49%), Gaps = 82/661 (12%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           Q+HA  + TGF  +  +   LVA +         + AR +F +  +   +++   WN ++
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGG---FGFMDDARRVFNEADS---ERNAVSWNGLM 174

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
             Y       +A+ +F  M+ +G+   +F  S V+ AC+    IE G Q+H ++ ++ + 
Sbjct: 175 SAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYD 234

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
            D+F  N L+ +Y++ G ++ A  +F+KM   D VS+N++I G V +G+   A EL   M
Sbjct: 235 KDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 294

Query: 212 PIRE--RNLISWNSVL---NGYAQLKSGLQF----------------------------- 237
                  N+ + +S+L   +G      G Q                              
Sbjct: 295 KYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFL 354

Query: 238 --AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK----------------- 278
             A ++F+ M  RDLI  N+++ GC   G+ D+A +LF ++ K                 
Sbjct: 355 DDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKST 414

Query: 279 ---------RDVVSWA-------------NMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
                    R V + A              +ID Y K   +  A R+F+E    D++AC 
Sbjct: 415 ASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACT 474

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
           +M+    +  +   A+++F  M     L PD   L  +L+A A L   ++G  +H +L K
Sbjct: 475 SMITALSQCDHGEGAIKLFMEM-LRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIK 533

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
            QF  +   G AL+  Y+KCGSIE+A   F  + +  V  W+AMI GLA HG G+ A +L
Sbjct: 534 RQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALEL 593

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
              M    I P+ IT T +L AC HAGLV E    F  M+ +  ++   +HY CM+D+LG
Sbjct: 594 FGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLG 653

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556
           RAG ++ A  L+  MP + N  IW  LL A R +++  +G+  A+ L  ++   S ++VL
Sbjct: 654 RAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVL 713

Query: 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYM 616
           L+N +A  GMWN+  +VR +MK+ N+KK P  SWIE++  VH F V DKS    ++IY  
Sbjct: 714 LANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAK 773

Query: 617 L 617
           L
Sbjct: 774 L 774



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 157/641 (24%), Positives = 279/641 (43%), Gaps = 124/641 (19%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSS--PCTPLTEFARYIFFKYHAFREKKDP--FLW 87
            +HA ++ +G + +      L++ +S    PC      AR +F       E  DP    W
Sbjct: 25  HLHASLLKSGSLAS--FRNHLISFYSKCRRPCC-----ARRVF------DEIPDPCHVSW 71

Query: 88  NAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRK 147
           ++++  YS+   P+ A+  F  M   GV  ++F+  +VLK      L   G Q+H +   
Sbjct: 72  SSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARL---GAQVHAMAMA 128

Query: 148 VAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM-GIRDSVSYNSMIDGYVK--------- 197
             FGSD+F+ N L+++Y   G+++ AR++F++    R++VS+N ++  YVK         
Sbjct: 129 TGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQ 188

Query: 198 --------------------------SGNIESARELFDSMPIR---ERNLISWNSVLNGY 228
                                     S NIE+ R++  +M +R   ++++ + N++++ Y
Sbjct: 189 VFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVH-AMVVRMGYDKDVFTANALVDMY 247

Query: 229 AQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSW 284
            ++   +  A  IFEKMP+ D++SWN+++ GCV  G    A  L  +M       +V + 
Sbjct: 248 MKMGR-VDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTL 306

Query: 285 ANMIDGYAKLGRVDIARRL-----------------------------------FDEMPK 309
           ++++   +  G  D+ R++                                   FD M  
Sbjct: 307 SSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFH 366

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           RD++ CNA++ G    G   +AL +F  ++ E  L  +  +L  VL + A L        
Sbjct: 367 RDLILCNALISGCSHGGRHDEALSLFYELRKE-GLGVNRTTLAAVLKSTASLEAASTTRQ 425

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
           +H    K  F  +      LID Y KC  + +A +VFE+   G +    +MI  L+    
Sbjct: 426 VHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDH 485

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
           GE A  L MEM R  +EPD    + LLNACA        L  +E  +++H    + Q   
Sbjct: 486 GEGAIKLFMEMLRKGLEPDPFVLSSLLNACA-------SLSAYEQGKQVHAHLIKRQFMS 538

Query: 490 ------CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
                  +V    + G IE A      +P E   V W  ++     + +       A  L
Sbjct: 539 DAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGH----GKRALEL 593

Query: 544 IG--MDSSNSSSYVLLSNMFAGL---GMWNDARRVRSMMKE 579
            G  +D   + +++ ++++       G+ ++A+R  + MKE
Sbjct: 594 FGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKE 634



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 150/609 (24%), Positives = 245/609 (40%), Gaps = 123/609 (20%)

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G  +H  L K   GS    +N LIS Y +C     AR++FD++     VS++S++  Y  
Sbjct: 23  GAHLHASLLKS--GSLASFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 198 SGNIESARELFDSM------------PIRERNL---------------ISWNS---VLNG 227
           +G   SA + F  M            P+  + +                 + S   V N 
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARLGAQVHAMAMATGFGSDVFVANA 140

Query: 228 YAQLKSGLQF---AWQIF-EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP------ 277
              +  G  F   A ++F E   ER+ +SWN ++   VK  +  DA  +F +M       
Sbjct: 141 LVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQP 200

Query: 278 ---------------------------------KRDVVSWANMIDGYAKLGRVDIARRLF 304
                                             +DV +   ++D Y K+GRVDIA  +F
Sbjct: 201 TEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIF 260

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
           ++MP  DVV+ NA++ G V NG+  +A+E+   M+    L P+  +L  +L A +  G  
Sbjct: 261 EKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYS-GLVPNVFTLSSILKACSGAGAF 319

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
           D G  IH ++ K     +   GV L+DMY+K   +++A KVF+ +    +   NA+I+G 
Sbjct: 320 DLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGC 379

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA-----------HAGLVKEGLL--- 470
           +  G  + A  L  E+ +  +  +  T   +L + A           HA  VK G +   
Sbjct: 380 SHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDA 439

Query: 471 --------------CFELMRRIHKLEPELQHYGC--MVDILGRAGHIEAARNLIEDM--- 511
                         C     R+ +         C  M+  L +  H E A  L  +M   
Sbjct: 440 HVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRK 499

Query: 512 PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD-SSNSSSYVLLSNMFAGLGMWNDA 570
            +EP+  +  +LL+AC +      G+ V  HLI     S++ +   L   +A  G   DA
Sbjct: 500 GLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDA 559

Query: 571 RRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPD-----S 625
               S + ER +      SW  + G + +       +  +     M+D    P+     S
Sbjct: 560 ELAFSSLPERGV-----VSWSAMIGGLAQ---HGHGKRALELFGRMVDEGINPNHITMTS 611

Query: 626 VATSCTHYG 634
           V  +C H G
Sbjct: 612 VLCACNHAG 620



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 126/302 (41%), Gaps = 59/302 (19%)

Query: 23  KCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKK 82
           KC  L+D N++     +   I  T + T L      S C                     
Sbjct: 451 KCSCLSDANRVFEECSSGDIIACTSMITAL------SQC--------------------- 483

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
                        HG   + A+ +F  ML  G+  D F  S +L AC+ L   E+G Q+H
Sbjct: 484 ------------DHG---EGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVH 528

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
             L K  F SD F  N L+  Y +CG +E A   F  +  R  VS+++MI G  + G+ +
Sbjct: 529 AHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGK 588

Query: 203 SARELFDSMPIR--ERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLISWNSMLHG 259
            A ELF  M       N I+  SVL   A   +GL   A + F  M E   I      + 
Sbjct: 589 RALELFGRMVDEGINPNHITMTSVL--CACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYS 646

Query: 260 CV-----KCGKMDDAQALFDKMP-KRDVVSW-----ANMIDGYAKLGRVDIARRLFDEMP 308
           C+     + GK+DDA  L + MP + +   W     A+ +    +LG++  A +LF   P
Sbjct: 647 CMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKL-AAEKLFILEP 705

Query: 309 KR 310
           ++
Sbjct: 706 EK 707


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 203/661 (30%), Positives = 325/661 (49%), Gaps = 82/661 (12%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           Q+HA  + TGF  +  +   LVA +         + AR +F +  +   +++   WN ++
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGG---FGFMDDARRVFNEADS---ERNAVSWNGLM 174

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
             Y       +A+ +F  M+ +G+   +F  S V+ AC+    IE G Q+H ++ ++ + 
Sbjct: 175 SAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYD 234

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
            D+F  N L+ +Y++ G ++ A  +F+KM   D VS+N++I G V +G+   A EL   M
Sbjct: 235 KDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 294

Query: 212 PIRE--RNLISWNSVL---NGYAQLKSGLQF----------------------------- 237
                  N+ + +S+L   +G      G Q                              
Sbjct: 295 KYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFL 354

Query: 238 --AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK----------------- 278
             A ++F+ M  RDLI  N+++ GC   G+ D+A +LF ++ K                 
Sbjct: 355 DDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKST 414

Query: 279 ---------RDVVSWA-------------NMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
                    R V + A              +ID Y K   +  A R+F+E    D++AC 
Sbjct: 415 ASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACT 474

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
           +M+    +  +   A+++F  M     L PD   L  +L+A A L   ++G  +H +L K
Sbjct: 475 SMITALSQCDHGEGAIKLFMEM-LRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIK 533

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
            QF  +   G AL+  Y+KCGSIE+A   F  + +  V  W+AMI GLA HG G+ A +L
Sbjct: 534 RQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALEL 593

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
              M    I P+ IT T +L AC HAGLV E    F  M+ +  ++   +HY CM+D+LG
Sbjct: 594 FGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLG 653

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556
           RAG ++ A  L+  MP + N  IW  LL A R +++  +G+  A+ L  ++   S ++VL
Sbjct: 654 RAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVL 713

Query: 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYM 616
           L+N +A  GMWN+  +VR +MK+ N+KK P  SWIE++  VH F V DKS    ++IY  
Sbjct: 714 LANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAK 773

Query: 617 L 617
           L
Sbjct: 774 L 774



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 148/593 (24%), Positives = 260/593 (43%), Gaps = 109/593 (18%)

Query: 78  FREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
           F E  DP    W++++  YS+   P+ A+  F  M   GV  ++F+  +VLK      L 
Sbjct: 60  FDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARL- 118

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM-GIRDSVSYNSMIDG 194
             G Q+H +     FGSD+F+ N L+++Y   G+++ AR++F++    R++VS+N ++  
Sbjct: 119 --GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSA 176

Query: 195 YVK-----------------------------------SGNIESARELFDSMPIR---ER 216
           YVK                                   S NIE+ R++  +M +R   ++
Sbjct: 177 YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVH-AMVVRMGYDK 235

Query: 217 NLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM 276
           ++ + N++++ Y ++   +  A  IFEKMP+ D++SWN+++ GCV  G    A  L  +M
Sbjct: 236 DVFTANALVDMYMKMGR-VDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 294

Query: 277 PKR----DVVSWANMIDGYAKLGRVDIARRL----------------------------- 303
                  +V + ++++   +  G  D+ R++                             
Sbjct: 295 KYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFL 354

Query: 304 ------FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
                 FD M  RD++ CNA++ G    G   +AL +F  ++ E  L  +  +L  VL +
Sbjct: 355 DDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKE-GLGVNRTTLAAVLKS 413

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
            A L        +H    K  F  +      LID Y KC  + +A +VFE+   G +   
Sbjct: 414 TASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIAC 473

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
            +MI  L+    GE A  L MEM R  +EPD    + LLNACA        L  +E  ++
Sbjct: 474 TSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACA-------SLSAYEQGKQ 526

Query: 478 IHKLEPELQHYG------CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYE 531
           +H    + Q          +V    + G IE A      +P E   V W  ++     + 
Sbjct: 527 VHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHG 585

Query: 532 NLNVGEPVAKHLIG--MDSSNSSSYVLLSNMFAGL---GMWNDARRVRSMMKE 579
           +       A  L G  +D   + +++ ++++       G+ ++A+R  + MKE
Sbjct: 586 H----GKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKE 634



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 150/609 (24%), Positives = 244/609 (40%), Gaps = 123/609 (20%)

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G  +H  L K   GS    +N LIS Y +C     AR+ FD++     VS++S++  Y  
Sbjct: 23  GAHLHASLLKS--GSLASFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSN 80

Query: 198 SGNIESARELFDSM------------PIRERNL---------------ISWNS---VLNG 227
           +G   SA + F  M            P+  + +                 + S   V N 
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARLGAQVHAMAMATGFGSDVFVANA 140

Query: 228 YAQLKSGLQF---AWQIF-EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP------ 277
              +  G  F   A ++F E   ER+ +SWN ++   VK  +  DA  +F +M       
Sbjct: 141 LVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQP 200

Query: 278 ---------------------------------KRDVVSWANMIDGYAKLGRVDIARRLF 304
                                             +DV +   ++D Y K+GRVDIA  +F
Sbjct: 201 TEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIF 260

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
           ++MP  DVV+ NA++ G V NG+  +A+E+   M+    L P+  +L  +L A +  G  
Sbjct: 261 EKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYS-GLVPNVFTLSSILKACSGAGAF 319

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
           D G  IH ++ K     +   GV L+DMY+K   +++A KVF+ +    +   NA+I+G 
Sbjct: 320 DLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGC 379

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA-----------HAGLVKEGLL--- 470
           +  G  + A  L  E+ +  +  +  T   +L + A           HA  VK G +   
Sbjct: 380 SHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDA 439

Query: 471 --------------CFELMRRIHKLEPELQHYGC--MVDILGRAGHIEAARNLIEDM--- 511
                         C     R+ +         C  M+  L +  H E A  L  +M   
Sbjct: 440 HVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRK 499

Query: 512 PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD-SSNSSSYVLLSNMFAGLGMWNDA 570
            +EP+  +  +LL+AC +      G+ V  HLI     S++ +   L   +A  G   DA
Sbjct: 500 GLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDA 559

Query: 571 RRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPD-----S 625
               S + ER +      SW  + G + +       +  +     M+D    P+     S
Sbjct: 560 ELAFSSLPERGV-----VSWSAMIGGLAQ---HGHGKRALELFGRMVDEGINPNHITMTS 611

Query: 626 VATSCTHYG 634
           V  +C H G
Sbjct: 612 VLCACNHAG 620



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 126/302 (41%), Gaps = 59/302 (19%)

Query: 23  KCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKK 82
           KC  L+D N++     +   I  T + T L      S C                     
Sbjct: 451 KCSCLSDANRVFEECSSGDIIACTSMITAL------SQC--------------------- 483

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
                        HG   + A+ +F  ML  G+  D F  S +L AC+ L   E+G Q+H
Sbjct: 484 ------------DHG---EGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVH 528

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
             L K  F SD F  N L+  Y +CG +E A   F  +  R  VS+++MI G  + G+ +
Sbjct: 529 AHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGK 588

Query: 203 SARELFDSMPIR--ERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLISWNSMLHG 259
            A ELF  M       N I+  SVL   A   +GL   A + F  M E   I      + 
Sbjct: 589 RALELFGRMVDEGINPNHITMTSVL--CACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYS 646

Query: 260 CV-----KCGKMDDAQALFDKMPKRDVVS-W-----ANMIDGYAKLGRVDIARRLFDEMP 308
           C+     + GK+DDA  L + MP +   S W     A+ +    +LG++  A +LF   P
Sbjct: 647 CMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKL-AAEKLFILEP 705

Query: 309 KR 310
           ++
Sbjct: 706 EK 707


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 204/635 (32%), Positives = 326/635 (51%), Gaps = 67/635 (10%)

Query: 1   MFVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP 60
           +F + N N   +     L LL++C +   + QIH +       K  HL ++ ++      
Sbjct: 8   IFKTINTNTNHSPIFLLLSLLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQSIS------ 61

Query: 61  CTPLTEFARYIFFKYHAFREKKDPFLWNAIIK-TYSHGLDPKEALVMFCLMLDNGVSVDK 119
              L +F        H      D + +N +++ T +   D    L ++  M    +S + 
Sbjct: 62  ---LKDFTYSTLIFSHITPHPND-YAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNN 117

Query: 120 FSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK 179
           F+   V  AC+ L  I      H  + K+   +D                          
Sbjct: 118 FTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHH------------------------ 153

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAW 239
                  + NSM+  Y + G    AR++FD   I E++L+SWNS+L+GYA+L    + A 
Sbjct: 154 -------TVNSMVTMYFRCGENGVARKVFDE--ITEKDLVSWNSLLSGYAKLGFARE-AV 203

Query: 240 QIFEKMPER-----DLISWNSMLHGCVKCGKMDDAQ----ALFDKMPKRDVVSWANMIDG 290
           ++F ++ E      D +S  S+L  C + G ++  +     + ++  K +    + +I  
Sbjct: 204 EVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISM 263

Query: 291 YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
           Y+K G +  +RR+FD MP RD +  NA +  Y +NG + +A+ +F +M+ E  + P+  +
Sbjct: 264 YSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMK-ENGVDPNKVT 322

Query: 351 LVIVLSAIAQLGHIDKG-----VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKV 405
           L  VLSA A +G +D G      A HR L+ D F        ALIDMY+KCGS+E+A +V
Sbjct: 323 LTAVLSACASIGALDLGKQMDEYATHRGLQHDIFV-----ATALIDMYAKCGSLESAQRV 377

Query: 406 FEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM--ERLSIEPDDITFTGLLNACAHAG 463
           F  +   +   WNAMI+ LA HG  + A  L   M  E  S  P+DITF  LL+AC HAG
Sbjct: 378 FNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAG 437

Query: 464 LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTL 523
           LV EG   F++M  +  L P+++HY CMVD+L RAGH+  A ++IE MP +P++V    L
Sbjct: 438 LVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGAL 497

Query: 524 LSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583
            SAC+  +N+++GE V + L+ +D SNS +Y++ S ++  L MW+DA R+R++M+E  + 
Sbjct: 498 HSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMRENGVT 557

Query: 584 KLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           K PGCSWIE+   + EF   D   L   D+  ++D
Sbjct: 558 KTPGCSWIEVGNQLREFLSGDGLTLDSIDVRNIID 592


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 195/605 (32%), Positives = 309/605 (51%), Gaps = 62/605 (10%)

Query: 33  IHARMITTGF-IKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           I  +++T  F I   H +T   A+      T LT     +F KY    ++ D + WN++I
Sbjct: 7   ISLQLLTISFKIHKNHFSTTAAAT-----NTNLTT----LFNKYF---DRTDVYSWNSLI 54

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
              + G D  E+L  F  M    +  ++ +    +K+CS L  +  G Q H       F 
Sbjct: 55  AELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFE 114

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
           SDLF+ + LI +Y +C                               G + +AR LFD +
Sbjct: 115 SDLFVSSALIDMYSKC-------------------------------GKLSNARVLFDEI 143

Query: 212 PIRERNLISWNSVLNGYAQLKSG----LQFAWQIFEKM--------PERDLISWNSMLHG 259
           P   RN+++W S++ GY Q        + F   +FEK            D ++  S+L  
Sbjct: 144 P--RRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSA 201

Query: 260 CVKCGKMDDAQALFD---KMPKRDVVSWAN-MIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           C +      ++ +     K+    V+   N ++D YAK G V ++R++FD+M ++DVV+ 
Sbjct: 202 CSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSW 261

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           N+M+  Y +NG S  A E+F  M        ++ +L  +L A A  G +  G+ +H  + 
Sbjct: 262 NSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVI 321

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           K  +  N     ++IDMY KCG  E A   F+ +++ +V  W AMI G  +HG    A D
Sbjct: 322 KMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALD 381

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           +  +M    ++P+ ITF  +L AC+HAG ++EG   F  M   + +EP ++HYGCMVD+L
Sbjct: 382 VFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLL 441

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           GRAG+I+ A NLI+ M +  + V+W +LL+ACR ++++ + E  A+ L  +D SN   YV
Sbjct: 442 GRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYV 501

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY 615
           LL+N++A  G W D  R+R ++K+R L K PG S +EL+G VH F V DK   Q   IY 
Sbjct: 502 LLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYK 561

Query: 616 MLDNM 620
            L+ +
Sbjct: 562 YLEEL 566



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 135/555 (24%), Positives = 245/555 (44%), Gaps = 99/555 (17%)

Query: 21  LRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           ++ C  L D+N   Q H + +  GF  +  +++ L+  +S   C  L+  AR +F +   
Sbjct: 89  IKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYS--KCGKLSN-ARVLFDEI-- 143

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLML---------DNGVSVDKFSASLVLKA 128
              +++   W ++I  Y    D  EAL++F   L         + G SVD  +   VL A
Sbjct: 144 --PRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSA 201

Query: 129 CSRLG--LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSV 186
           CSR+    + EG  +HG+  KV     + ++N L+  Y +CG +  +R++FD M  +D V
Sbjct: 202 CSRVSNKAVSEG--VHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVV 259

Query: 187 SYNSMIDGYVKSGNIESARELFDSMPIR---ERNLISWNSVLNGYAQ---LKSGLQFAWQ 240
           S+NSMI  Y ++G    A E+F  M      + N ++ +++L   A    L+ G+    Q
Sbjct: 260 SWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQ 319

Query: 241 IFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIA 300
           + +     ++I   S++    KCG+ + A+  FD M +++V SW  MI GY         
Sbjct: 320 VIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYG-------- 371

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
                                   +G++ +AL++F  M     + P+  + + VL+A + 
Sbjct: 372 -----------------------MHGFAREALDVFYQM-IWAGVKPNYITFISVLAACSH 407

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGV----ALIDMYSKCGSIENAIKVFEQIE-DGSVD 415
            G +++G    R+        N + GV     ++D+  + G I+ A  + + ++      
Sbjct: 408 AGFLEEG---WRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFV 464

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLL-NACAHAG----------L 464
            W +++    IH   ELA   +   E   ++P +  +  LL N  A AG          L
Sbjct: 465 LWGSLLAACRIHKDVELA--EISARELFKLDPSNCGYYVLLANIYADAGRWKDVERMRIL 522

Query: 465 VKE-------GLLCFELMRRIH------KLEPELQH-YGCMVDI---LGRAGHIEAARNL 507
           VK+       G    EL  R+H      K  P+ +  Y  + ++   L  AG++    ++
Sbjct: 523 VKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEAGYVPNMASV 582

Query: 508 IEDMPMEPNDVIWRT 522
           + D+  E  ++I R 
Sbjct: 583 LHDVDEEEKEMIVRV 597


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 205/697 (29%), Positives = 347/697 (49%), Gaps = 96/697 (13%)

Query: 3   VSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCT 62
           VS  ++    +  S L L    K+L D  ++   +   GF+ +++L +KL  S   + C 
Sbjct: 86  VSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKL--SLMYTNCG 143

Query: 63  PLTEFARYIFFKYHAFREKK--DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKF 120
            L E +R        F E K      WN ++   +   D   ++ +F  M+ +GV +D +
Sbjct: 144 DLKEASR-------VFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSY 196

Query: 121 SASLVLKACSRLGLIEEGLQIHGLLRKVAFGS---------------------------- 152
           + S V K+ S L  +  G Q+HG + K  FG                             
Sbjct: 197 TFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEM 256

Query: 153 ---DLFLQNCLISLYVRCGYLEFARQLFDKM----------------------------- 180
              D+   N +I+ YV  G  E    +F +M                             
Sbjct: 257 TERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGR 316

Query: 181 -----GIRDSVSY-----NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ 230
                G++   S      N+++D Y K G+++SA+ +F  M   +R+++S+ S++ GYA 
Sbjct: 317 AVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMS--DRSVVSYTSMIAGYA- 373

Query: 231 LKSGLQF-AWQIFEKMPER----DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV---- 281
            + GL   A ++FE+M E     D+ +  ++L+ C +   +D+ + + + + + D+    
Sbjct: 374 -REGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDI 432

Query: 282 -VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQC 340
            VS A ++D YAK G +  A  +F EM  +D+++ N ++GGY +N Y+ +AL +F+ +  
Sbjct: 433 FVSNA-LMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLE 491

Query: 341 ELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE 400
           E    PD+ ++  VL A A L   DKG  IH Y+ ++ +  +     +L+DMY+KCG++ 
Sbjct: 492 EKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALL 551

Query: 401 NAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460
            A  +F+ I    +  W  MI G  +HG G+ A  L  +M +  IE D+I+F  LL AC+
Sbjct: 552 LAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACS 611

Query: 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIW 520
           H+GLV EG   F +MR   K+EP ++HY C+VD+L R G +  A   IE+MP+ P+  IW
Sbjct: 612 HSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIW 671

Query: 521 RTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580
             LL  CR + ++ + E VA+ +  ++  N+  YVL++N++A    W   +R+R  + +R
Sbjct: 672 GALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQR 731

Query: 581 NLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
            L+K PGCSWIE++G V+ F   D S  +  +I   L
Sbjct: 732 GLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFL 768


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 175/520 (33%), Positives = 279/520 (53%), Gaps = 30/520 (5%)

Query: 120 FSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK 179
            S + V +  + L +++ G Q+H  +          + + +++ Y   G ++ +  +F+ 
Sbjct: 71  LSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNG 130

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSM------------PIRERNLISWNSVLNG 227
           +G   S+ +NSMI  Y + G  E     + SM            P   ++ +   SV  G
Sbjct: 131 IGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMG 190

Query: 228 YAQ----LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS 283
                  L+ GLQF           DL    S++    KCG+++DA  +FD M  RDV S
Sbjct: 191 KCVHGLILRIGLQF-----------DLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSS 239

Query: 284 WANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE-L 342
           W  ++ GY K G +D A  +F+ MP R++V+   M+ GY ++G + +AL +FD M  E  
Sbjct: 240 WNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDS 299

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENA 402
            + P+  +++ VL A AQL  +++G  IH    +   + N    +AL  MY+KCGS+ +A
Sbjct: 300 GVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDA 359

Query: 403 IKVFEQIE--DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460
              F+++   + ++  WN MI   A +G G  A     EM +  I+PDDITFTGLL+ C+
Sbjct: 360 RNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCS 419

Query: 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIW 520
           H+GLV  GL  F  M   + + P ++HY C+ D+LGRAG +  A  L+ +MPM     IW
Sbjct: 420 HSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIW 479

Query: 521 RTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580
            +LL+ACR + NL + E  A+ L  ++  N+ +YVLLSNM+A  G W +  ++R+++K +
Sbjct: 480 GSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQ 539

Query: 581 NLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
             KK PGCSWIE+ G  H F   D S  Q ++IY  L+ +
Sbjct: 540 GTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEAL 579



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 135/516 (26%), Positives = 247/516 (47%), Gaps = 41/516 (7%)

Query: 3   VSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCT 62
           +SA    P  S       L     L   +Q+HA M+  G      + +K+VA ++SS   
Sbjct: 62  LSAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASS--- 118

Query: 63  PLTEFARYIFFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKF 120
                   I      F    +P   L+N++I+ Y+     +  +  +  M   G + D F
Sbjct: 119 ------GDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYF 172

Query: 121 SASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
           +   VLK+   L  +  G  +HGL+ ++    DL++   LI LY +CG +  A ++FD M
Sbjct: 173 TFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNM 232

Query: 181 GIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QFAW 239
            IRD  S+N+++ GY KSG I++A  +F+ MP   RN++SW ++++GY+Q  SGL Q A 
Sbjct: 233 TIRDVSSWNALLAGYTKSGCIDAALAIFERMPW--RNIVSWTTMISGYSQ--SGLAQQAL 288

Query: 240 QIFEKMPERD------LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDG--- 290
            +F++M + D       ++  S+L  C +   ++  + + +   +  + S A+++     
Sbjct: 289 SLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTA 348

Query: 291 -YAKLGRVDIARRLFDEMPK--RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD 347
            YAK G +  AR  FD++ +  ++++A N M+  Y   G+ ++A+  F  M  +  + PD
Sbjct: 349 MYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREM-IQAGIQPD 407

Query: 348 DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK--HGVALIDMYSKCGSIENAIK- 404
           D +   +LS  +  G +D G+    ++    +S+N +  H   + D+  + G +  A K 
Sbjct: 408 DITFTGLLSGCSHSGLVDVGLKYFNHMST-TYSINPRVEHYACVADLLGRAGRLAEASKL 466

Query: 405 VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAG 463
           V E         W +++     H   E+A     ++    +EP++   +  L N  A AG
Sbjct: 467 VGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKL--FVLEPENTGNYVLLSNMYAEAG 524

Query: 464 LVKEGLLCFELMRRIHKLEPELQHYGC-MVDILGRA 498
             +E     + +R I K +   +  GC  ++I G+A
Sbjct: 525 RWQE----VDKLRAIVKSQGTKKSPGCSWIEINGKA 556


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 191/610 (31%), Positives = 308/610 (50%), Gaps = 82/610 (13%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           WNA+I  Y    D  +AL +F  ML + V  D  +  + ++AC+ LG ++ G QIH L  
Sbjct: 223 WNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAI 282

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           K  F  DL++ N L+++Y   G LE + QLF+ +  RD+  +NSMI  Y   G  E A +
Sbjct: 283 KFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMD 342

Query: 207 LFDSMPIR-----ERNLISW---------------------------------NSVLNGY 228
           LF  M        ER ++                                   N++L+ Y
Sbjct: 343 LFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMY 402

Query: 229 AQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV------- 281
            +L   ++   +IF++M   D+ISWN+M+    +      A  LF++M + ++       
Sbjct: 403 TELNC-VESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTI 461

Query: 282 ------------VSWANMIDGYAKLGRVDI--------------------ARRLFDEMPK 309
                       + +   I GY     ++I                    AR LF+  P 
Sbjct: 462 ISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPD 521

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           RD+++ NAM+  YV+N  + KAL +F  M  E    P+  +++ VLS+   L  + +G +
Sbjct: 522 RDLISWNAMIASYVKNNQAHKALLLFHRMISEA--EPNSVTIINVLSSFTHLATLPQGQS 579

Query: 370 IHRYLEKDQFSLNGKHGVA--LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
           +H Y+ +  FSL     +A   I MY++CGS+++A  +F+ +   ++  WNAMI G  ++
Sbjct: 580 LHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMN 639

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           G G  A     +M      P+ +TF  +L+AC+H+G ++ GL  F  M +   + PEL H
Sbjct: 640 GRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVH 699

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
           Y C+VD+L R G I+ AR  I+ MP+EP+  +WR LLS+CR Y +    + + + L  ++
Sbjct: 700 YSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAKTIFEKLDKLE 759

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
             N+ +YVLLSN++A  G+W + RR+R+ +KE+ L+K PG SWI ++  VH F   D+S 
Sbjct: 760 PMNAGNYVLLSNVYATAGLWLEVRRIRTWLKEKGLRKPPGISWIIVKNQVHCFSAGDRSH 819

Query: 608 LQVRDIYYML 617
            Q   IY  L
Sbjct: 820 PQSDKIYAKL 829



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 150/682 (21%), Positives = 277/682 (40%), Gaps = 151/682 (22%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           KDP  WN++IK  ++  + +  L  +  M   GV  +  +  LVLKAC+    +E G  I
Sbjct: 16  KDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSI 75

Query: 142 H------GLLRKVAFGS-------------------------DLFLQNCLISLYVRCGYL 170
           H       L+  V  G+                         D+ L N ++  YV  G  
Sbjct: 76  HRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCY 135

Query: 171 EFARQLFDKMGIRDSVSYNSM--------------------IDGY-VKSGNIESARE--- 206
           E A  L  +MG R+++  NS                     + GY +++G  +S      
Sbjct: 136 EEAMLLVREMG-RENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVAT 194

Query: 207 ----------------LFDSMPIRERNLISWNSVLNGYAQLK---SGLQFAWQIFEKMPE 247
                           LFD M +R  N++SWN++++GY  +      L+   Q+     +
Sbjct: 195 ALIGFYLRFDMRVLPLLFDLMVVR--NIVSWNAMISGYYDVGDYFKALELFVQMLVDEVK 252

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRL 303
            D ++    +  C + G +   + +     K     D+     +++ Y+  G ++ + +L
Sbjct: 253 FDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQL 312

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           F+ +P RD    N+M+  Y   G   +A+++F  MQ E  +  D+ ++VI+LS   +L  
Sbjct: 313 FESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSE-GVKKDERTVVIMLSMCEELAS 371

Query: 364 -IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
            + KG ++H ++ K    ++   G AL+ MY++   +E+  K+F++++   +  WN MI 
Sbjct: 372 GLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMIL 431

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRI---- 478
            LA + L   A +L   M    I+P+  T   +L AC       E + C +  R I    
Sbjct: 432 ALARNTLRAQACELFERMRESEIKPNSYTIISILAAC-------EDVTCLDFGRSIHGYV 484

Query: 479 --HKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP------------------------ 512
             H +E        + D+    G    AR+L E  P                        
Sbjct: 485 MKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMIASYVKNNQAHKAL 544

Query: 513 ---------MEPNDVIWRTLLSACRNYENLNVGEPVAKHL------IGMDSSNSSSYVLL 557
                     EPN V    +LS+  +   L  G+ +  ++      +G+D S +++++  
Sbjct: 545 LLFHRMISEAEPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFI-- 602

Query: 558 SNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
             M+A  G    A  +   + +RN+      SW     ++  + +  +    +     ML
Sbjct: 603 -TMYARCGSLQSAENIFKTLPKRNI-----ISW---NAMIAGYGMNGRGSDAMLAFSQML 653

Query: 618 DNMWTPD-----SVATSCTHYG 634
           ++ + P+     SV ++C+H G
Sbjct: 654 EDGFRPNGVTFVSVLSACSHSG 675



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 110/467 (23%), Positives = 205/467 (43%), Gaps = 62/467 (13%)

Query: 15  QSTLLLLRKCKTLNDV----NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY 70
           ++ +++L  C+ L         +HA +I +G   +  L   L++ ++   C    E  + 
Sbjct: 357 RTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCV---ESVQK 413

Query: 71  IFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS 130
           IF +        D   WN +I   +      +A  +F  M ++ +  + ++   +L AC 
Sbjct: 414 IFDRMKGV----DIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAACE 469

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
            +  ++ G  IHG + K +   +  L+  L  +Y+ CG    AR LF+    RD +S+N+
Sbjct: 470 DVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNA 529

Query: 191 MIDGYVKSGNIESARELFDSMPIR-ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER- 248
           MI  YVK+     A  LF  M    E N ++  +VL+ +  L + L     +   +  R 
Sbjct: 530 MIASYVKNNQAHKALLLFHRMISEAEPNSVTIINVLSSFTHLAT-LPQGQSLHAYVTRRG 588

Query: 249 -----DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRL 303
                DL   N+ +    +CG +  A+ +F  +PKR+++SW  MI GY   GR   A   
Sbjct: 589 FSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLA 648

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           F +M               + +G+                  P+  + V VLSA +  G 
Sbjct: 649 FSQM---------------LEDGF-----------------RPNGVTFVSVLSACSHSGF 676

Query: 364 IDKGVAIHRYLEKDQFSLNGK--HGVALIDMYSKCGSIENAIKVFEQI---EDGSVDHWN 418
           I+ G+ +   + +D F++  +  H   ++D+ ++ G I+ A +  + +    D SV  W 
Sbjct: 677 IEMGLQLFHSMVQD-FNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASV--WR 733

Query: 419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGL 464
           A+++    +   + A  +  ++++L  EP +   +  L N  A AGL
Sbjct: 734 ALLSSCRAYSDAKQAKTIFEKLDKL--EPMNAGNYVLLSNVYATAGL 778


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 150/357 (42%), Positives = 228/357 (63%), Gaps = 1/357 (0%)

Query: 264 GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV 323
           G++ DA  L       D  ++  +I  YA+ GRV  AR LFDEMP R+ V+ +AM+ GYV
Sbjct: 260 GRLSDALVLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYV 319

Query: 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG 383
           + G   +AL +F  MQ +  + PDD  LV VL+A AQLG +++G  +H YL+ +   +  
Sbjct: 320 QAGDGREALGLFARMQAD-GVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITV 378

Query: 384 KHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
             G AL+DMY+KCG ++ A++VF+ +++ +V  W  MI GLA+HG G  A +L  +MERL
Sbjct: 379 FLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERL 438

Query: 444 SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503
            ++PDDI F G L AC H GLV +G   F+ M R + ++P+++HYGCMVD+L R G +  
Sbjct: 439 GVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNE 498

Query: 504 ARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563
           AR ++E MPM+P+ +IW  L++ CR ++N+ + E V KH I ++   S +YVLL N++A 
Sbjct: 499 AREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAA 558

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            G    AR +R +M+E+ + K PGCS +E++GV+H+F V D S   + +I    D +
Sbjct: 559 SGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEILSKWDEI 615



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 140/305 (45%), Gaps = 43/305 (14%)

Query: 28  NDVNQIHARMITTGFIKNTHLTTKLVASFSSSPC-TPLTEFARY--IFFKYHAFRE--KK 82
           N + ++HA ++  G + +  +  +  AS  +S   T +T +AR   +      F E   +
Sbjct: 249 NALIRVHAGIL--GRLSDALVLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPAR 306

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           +   W+A++  Y    D +EAL +F  M  +GV  D      VL AC++LG++E+G  +H
Sbjct: 307 NAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVH 366

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
           G L+       +FL   L+ +Y +CG ++ A ++F  M  ++ +++ +MI G    G   
Sbjct: 367 GYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGS 426

Query: 203 SARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVK 262
            A ELF  M   ER  +                           + D I++   L  C  
Sbjct: 427 EALELFSQM---ERLGV---------------------------KPDDIAFIGALCACTH 456

Query: 263 CGKMDDAQALFDKMPKR-----DVVSWANMIDGYAKLGRVDIARRLFDEMP-KRDVVACN 316
            G +D  + LFD M ++      +  +  M+D  A+ G ++ AR + ++MP K D +   
Sbjct: 457 TGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWG 516

Query: 317 AMMGG 321
           A+M G
Sbjct: 517 ALMAG 521



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 179/427 (41%), Gaps = 86/427 (20%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           ++A ++  G     H    L+ S + SP  P    AR +    HA               
Sbjct: 193 LYAHLLRAGHHPTPHTLPSLLKSLALSPAVP---GARGLALAVHA--------------- 234

Query: 93  TYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGS 152
              H +  K  L  F L+          S +L+      LG + + L    +L + A   
Sbjct: 235 ---HAV--KLGLAGFLLV----------SNALIRVHAGILGRLSDAL----VLLRTAASV 275

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           D    N LI+ Y R G +  AR LFD+M  R++VS+++M++GYV++G+   A  LF  M 
Sbjct: 276 DASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQ 335

Query: 213 ---IRERNLISWNSVLNGYAQLKSGLQFAW-QIFEKMPERDLISW--NSMLHGCVKCGKM 266
              +R  + +    VL   AQL    Q  W   + K     +  +   +++    KCG+M
Sbjct: 336 ADGVRPDDTV-LVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEM 394

Query: 267 DDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNG 326
             A  +F  M +++V++W  MI G A  GR                              
Sbjct: 395 QLAMEVFKVMKEKNVLAWTTMIKGLAMHGR------------------------------ 424

Query: 327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK-- 384
              +ALE+F  M+  L + PDD + +  L A    G +DKG  +   + + ++ +  K  
Sbjct: 425 -GSEALELFSQME-RLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVR-KYGIKPKIE 481

Query: 385 HGVALIDMYSKCGSIENAIKVFEQI---EDGSVDHWNAMINGLAIHGLGELAFDLLMEME 441
           H   ++D+ ++ G +  A ++ E++    D  +  W A++ G   H   ELA  ++    
Sbjct: 482 HYGCMVDLLARNGLLNEAREMVEKMPMKPDALI--WGALMAGCRFHKNVELAEYVVKHW- 538

Query: 442 RLSIEPD 448
            + +EPD
Sbjct: 539 -IELEPD 544


>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 178/498 (35%), Positives = 276/498 (55%), Gaps = 9/498 (1%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +LK CS L  +    Q H  +       D  L +  I      G+  ++  +F      D
Sbjct: 47  LLKQCSNLKHLH---QTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPD 103

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWN--SVLNGYAQLKS---GLQFAW 239
              YN++I           A  L++ +   +    +++   VL    +L +   G Q   
Sbjct: 104 IYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHC 163

Query: 240 QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDI 299
           Q        D+    +++     CG + +A+ LFD +  RDV  W  M+ GYAK+G VD 
Sbjct: 164 QAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDN 223

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           AR LF+ MP+R+V++  A++ GY +     +A+ +F  MQ E  + PD+ +++  LSA A
Sbjct: 224 ARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLE-EVEPDEIAMLAALSACA 282

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
            LG ++ G  IH Y++K   S       ALIDMY+KCG IE A++VF+ +E  SV  W +
Sbjct: 283 HLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTS 342

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           MI+GLA+HGLG  A ++   MER  I+P++ITF  +L+AC H GLV+ G   F+ M   +
Sbjct: 343 MIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKY 402

Query: 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPV 539
            ++P++QHYGCM+D+LGRAG ++ A+ L+  MP E N  IW +LL+A R + +  +G+  
Sbjct: 403 GIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQA 462

Query: 540 AKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHE 599
            +HLI ++  NS +Y LLSN++A    WN+A  VR +M++  +KK+PG S IE+   VHE
Sbjct: 463 LQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNNRVHE 522

Query: 600 FFVRDKSRLQVRDIYYML 617
           F   DK   Q   I+ +L
Sbjct: 523 FVAGDKLHPQSERIFEVL 540



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 143/501 (28%), Positives = 246/501 (49%), Gaps = 47/501 (9%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           L LL++C  L  ++Q H  M++ G  ++  L ++ + + SS      + ++  IF     
Sbjct: 45  LSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSS---LGFSHYSHSIF----T 97

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
            + + D +L+N IIK  S+     EA++++  +L + +  D +S   VLKA  RL  I  
Sbjct: 98  HKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHV 157

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G QIH         SD+ +   LI +Y  CG +  ARQLFD +  RD   +N+M+ GY K
Sbjct: 158 GRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAK 217

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLISW 253
            G++++AR LF+ MP  ERN+ISW +V+ GYAQ+    + A  +F +M     E D I+ 
Sbjct: 218 VGDVDNARHLFERMP--ERNVISWTAVIAGYAQMDRPNE-AITMFRRMQLEEVEPDEIAM 274

Query: 254 NSMLHGCVKCGKMDDAQAL---FDKMPKRDVVSWAN-MIDGYAKLGRVDIARRLFDEMPK 309
            + L  C   G ++  + +    DK     +V   N +ID YAK G+++ A  +F  M  
Sbjct: 275 LAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEH 334

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           + V+   +M+ G   +G   +ALE+F  M+    + P++ + V +LSA   +G ++ G  
Sbjct: 335 KSVITWTSMIDGLALHGLGREALEMFSCME-RNRIKPNEITFVAILSACCHVGLVEMGRW 393

Query: 370 IHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIH 427
             + +  K       +H   +ID+  + G ++ A ++   +  + +   W +++    IH
Sbjct: 394 YFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIH 453

Query: 428 GLGELAFDLLMEMERLSIEPDDI-TFTGLLNACA------HAGLVKE-----------GL 469
           G  EL    L  +  + +EP +   +T L N  A       AG+V++           G 
Sbjct: 454 GDAELGKQALQHL--IKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGG 511

Query: 470 LCFELMRRIH------KLEPE 484
            C E+  R+H      KL P+
Sbjct: 512 SCIEVNNRVHEFVAGDKLHPQ 532


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 199/643 (30%), Positives = 309/643 (48%), Gaps = 103/643 (16%)

Query: 75  YHAFREKKDPFL--WNAIIKTYSHGLDPKEA--LVMFCLMLDNGVSVDKFSASLVLKACS 130
           +H F +   P +  +N +I+ YS       A  L ++  ML + V+ + ++    LKACS
Sbjct: 77  HHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKACS 136

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
            L     G  IH         +DLF+   L+ +YV+C  L  A  +F  M  RD V++N+
Sbjct: 137 ALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNA 196

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVL------------------------- 225
           M+ GY   G    A     SM ++   L    S L                         
Sbjct: 197 MLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIR 256

Query: 226 -------NGYAQLKSG----------------LQFAWQIFEKMPERDLISWNSMLHGCVK 262
                  N  ++L  G                L +A ++F+ MP R+ ++W++++ G V 
Sbjct: 257 ACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVL 316

Query: 263 CGKMDDAQALFDKMPKR----------------------------------------DVV 282
           C +M  A  LF  M  +                                        D+ 
Sbjct: 317 CSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLT 376

Query: 283 SWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
           +  +++  YAK G +D A  LFDEM  +D V+ +A++ GYV+NG + +A  +F  MQ   
Sbjct: 377 AGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQ-AC 435

Query: 343 YLHPDDASLVIVLSAIAQL-----GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
            + PD A++V ++ A + L     G    G  I R L  +    N     ALIDMY+KCG
Sbjct: 436 NVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICN-----ALIDMYAKCG 490

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            I+ + +VF  +    +  WN MI G  IHGLG+ A  L +EM  L   PD +TF  LL+
Sbjct: 491 RIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLS 550

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
           AC+H+GLV EG   F +MR  + L P ++HY CMVD+L R G ++ A   I+ MP+  + 
Sbjct: 551 ACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADV 610

Query: 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
            +W  LL ACR Y+N+++G+ V++ +  +    + ++VLLSN+++  G +++A  VR + 
Sbjct: 611 RVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQ 670

Query: 578 KERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           K +  KK PGCSWIE+ G +H F   D+S  Q  +IY  LDN+
Sbjct: 671 KVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNI 713



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 109/450 (24%), Positives = 190/450 (42%), Gaps = 71/450 (15%)

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ-----LKSGLQFAWQIFEKMPERD 249
           ++ SG++  A  LFD +P    ++ ++N ++  Y+         GL    ++       +
Sbjct: 67  HIASGHLSRAHHLFDQIP--SPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPN 124

Query: 250 LISWNSMLHGCVK-----CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
             ++   L  C       CG+     A+   +     VS A ++D Y K   +  A  +F
Sbjct: 125 NYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTA-LLDMYVKCACLPDAAHIF 183

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELY-LHPDDASLVIVLSAIAQLGH 363
             MP RD+VA NAM+ GY  +G    A+    +MQ +++ L P+ ++LV +L  +AQ G 
Sbjct: 184 ATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGA 243

Query: 364 IDKGVAIHRYL----------EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
           + +G ++H Y            K + +     G AL+DMY+KCGS+  A +VF+ +   +
Sbjct: 244 LAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARN 303

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEM-----------------------------ERL- 443
              W+A+I G  +      AF L   M                             E+L 
Sbjct: 304 EVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLH 363

Query: 444 ------SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
                  +  D      LL+  A AGL+ + +  F+ M        +   Y  +V    +
Sbjct: 364 ALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMA-----VKDTVSYSALVSGYVQ 418

Query: 498 AGHIEAARNLIEDMP---MEPNDVIWRTLLSACRNYENLNVGEPVAKHLI--GMDSSNSS 552
            G  E A  + + M    +EP+     +L+ AC +   L  G      +I  G+ S  S 
Sbjct: 419 NGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSI 478

Query: 553 SYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
              L+ +M+A  G  + +R+V +MM  R++
Sbjct: 479 CNALI-DMYAKCGRIDLSRQVFNMMPSRDI 507


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 196/614 (31%), Positives = 311/614 (50%), Gaps = 83/614 (13%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           +  D  +WN  + +Y    +  EA+  F  M+ + V  D  +  ++L   + L  +E G 
Sbjct: 258 DDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGK 317

Query: 140 QIHGLLRKVAFGSDLFLQ--NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           QIHG +  V FG D F+   N  I++YV+ G + +AR++F +M   D +S+N++I G  +
Sbjct: 318 QIHGAV--VRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCAR 375

Query: 198 SGNIESARELF----------DSMPIRERNLISWNSVLNGYA--------QLKSG----- 234
           SG  E +  LF          D   I    L + +S+   Y          LK+G     
Sbjct: 376 SGLEECSLRLFIDLLRSGLLPDQFTITSV-LRACSSLEESYCVGRQVHTCALKAGIVLDS 434

Query: 235 ---------------LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR 279
                          ++ A  +F      DL SWN+M+HG        +A  LF  M +R
Sbjct: 435 FVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHER 494

Query: 280 ----DVVSWAN-----------------------------------MIDGYAKLGRVDIA 300
               D +++AN                                   ++D Y K G +  A
Sbjct: 495 GEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSA 554

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
           R++F+++P  D VA   ++ G V NG   +AL  +  M+    + PD+ +   ++ A + 
Sbjct: 555 RKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLA-GVQPDEYTFATLVKACSL 613

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
           L  +++G  IH  + K   + +     +L+DMY+KCG+IE+A  +F ++   SV  WNAM
Sbjct: 614 LTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAM 673

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           I GLA HG  E A +   EM+   + PD +TF G+L+AC+H+GL  +    F+ M++ + 
Sbjct: 674 IVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYG 733

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           +EPE++HY C+VD L RAGHI+ A  ++  MP E +  ++RTLL+ACR   +   GE VA
Sbjct: 734 VEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVA 793

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
           + L  MD S+S++YVLLSN++A    W +A   R+MMK  N+KK PG SWI+++  VH F
Sbjct: 794 EKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLF 853

Query: 601 FVRDKSRLQVRDIY 614
              D+S  +   IY
Sbjct: 854 VAGDRSHEETDLIY 867



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 146/589 (24%), Positives = 256/589 (43%), Gaps = 83/589 (14%)

Query: 8   NQPCNSTQSTLL-----LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSS 59
           ++ C+ + S+LL     +LR     +D+    + HA ++T+G   + ++T  L+  ++  
Sbjct: 2   SRKCSVSPSSLLPQWFSILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAK- 60

Query: 60  PCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLD------PKEALVMFCLMLDN 113
            C  L  F+    F     +  +D   +NAI+  Y+H  +        EA  +F L+  +
Sbjct: 61  -CGSL--FSARKLFDITP-QSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQS 116

Query: 114 GVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFA 173
            +   + + S + K C   G       + G   K+    D+F+   L+++Y +   +  A
Sbjct: 117 VMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREA 176

Query: 174 RQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYA-- 229
           R LFD+M +RD V +N M+  YV+ G  +    LF +        + +S  ++L G    
Sbjct: 177 RVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKK 236

Query: 230 -----QLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV--- 281
                +L+    +A ++F    + D+  WN  L   ++ G+  +A   F  M K  V   
Sbjct: 237 TVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCD 296

Query: 282 -----------------------------------VSWAN-MIDGYAKLGRVDIARRLFD 305
                                              VS AN  I+ Y K G V+ ARR+F 
Sbjct: 297 SLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFG 356

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH-I 364
           +M + D+++ N ++ G  R+G    +L +F ++     L PD  ++  VL A + L    
Sbjct: 357 QMKEVDLISWNTVISGCARSGLEECSLRLFIDL-LRSGLLPDQFTITSVLRACSSLEESY 415

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
             G  +H    K    L+     ALID+YSK G +E A  +F   +   +  WNAM++G 
Sbjct: 416 CVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGF 475

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
            +      A  L   M     + D ITF    NA   AG     L+  +  ++IH +  +
Sbjct: 476 TVSDNYREALRLFSLMHERGEKADQITFA---NAAKAAGC----LVRLQQGKQIHAVVIK 528

Query: 485 LQ-HYGCMV-----DILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSAC 527
           ++ HY   V     D+  + G +++AR +   +P  P+DV W T++S C
Sbjct: 529 MRFHYDLFVISGILDMYLKCGEMKSARKVFNQIP-SPDDVAWTTVISGC 576



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 172/361 (47%), Gaps = 20/361 (5%)

Query: 20  LLRKCKTLNDV----NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           +LR C +L +      Q+H   +  G + ++ ++T L+  +S        E A  +F   
Sbjct: 404 VLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGG---KMEEAELLFHNQ 460

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
             F    D   WNA++  ++   + +EAL +F LM + G   D+ + +   KA   L  +
Sbjct: 461 DGF----DLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRL 516

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
           ++G QIH ++ K+ F  DLF+ + ++ +Y++CG ++ AR++F+++   D V++ ++I G 
Sbjct: 517 QQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGC 576

Query: 196 VKSGNIESARELFDSMPIR-----ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL 250
           V++G  E A   +  M +      E    +     +    L+ G Q    I +     D 
Sbjct: 577 VENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDP 636

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
               S++    KCG ++DA  LF +M  R V  W  MI G A+ G  + A   F+EM  R
Sbjct: 637 FVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSR 696

Query: 311 ----DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
               D V    ++     +G +  A + FD+MQ    + P+      ++ A+++ GHI +
Sbjct: 697 GVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQE 756

Query: 367 G 367
            
Sbjct: 757 A 757


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 186/620 (30%), Positives = 335/620 (54%), Gaps = 54/620 (8%)

Query: 13  STQSTL-LLLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFA 68
           ++Q TL  +LR C +L  +     IH  ++  GF  N  + T LV  ++   C    EF 
Sbjct: 160 ASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEF- 218

Query: 69  RYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA 128
               FK   F ++K+  LW A++  Y+   D  +A+  F  M   GV  ++++   +L A
Sbjct: 219 ---LFKGLEF-DRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTA 274

Query: 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY 188
           CS +     G Q+HG + K  FGS++++Q+ L+ +Y +C                     
Sbjct: 275 CSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKC--------------------- 313

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF-AWQIFEKMPE 247
                     G++++A+ + ++M   + +++SWNS++ G+  ++ GL+  A ++F+ M  
Sbjct: 314 ----------GDLKNAKNMLETM--EDDDVVSWNSLMVGF--VRHGLEEEALRLFKNMHG 359

Query: 248 RDL----ISWNSMLHGCVKCGKMD--DAQALFDKMPKRDVVSWAN-MIDGYAKLGRVDIA 300
           R++     ++ S+L+ CV  G ++      L  K    +    +N ++D YAK G +D A
Sbjct: 360 RNMKIDDYTFPSVLNCCV-VGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCA 418

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
             +F++M ++DV++  +++ GY +N    ++L+IF +M+    ++PD   +  +LSA A+
Sbjct: 419 YTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVT-GVNPDQFIVASILSACAE 477

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
           L  ++ G  +H    K     +     +L+ MY+KCG +++A  +F  ++   V  W A+
Sbjct: 478 LTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAI 537

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           I G A +G G  +      M      PD ITF GLL AC+HAGLV EG   F+ M +++ 
Sbjct: 538 IVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYG 597

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           ++P  +HY CM+D+ GR+G ++ A+ L++ M ++P+  +W++LLSACR +ENL + E  A
Sbjct: 598 IKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAA 657

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
            +L  ++  N+  YV+LSNM++    WND  ++R +MK + + K PGCSW+E+   V+ F
Sbjct: 658 TNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTF 717

Query: 601 FVRDKSRLQVRDIYYMLDNM 620
              D+   +  +IY  +D +
Sbjct: 718 ISDDRGHPREAEIYTKIDEI 737



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 112/397 (28%), Positives = 186/397 (46%), Gaps = 46/397 (11%)

Query: 154 LFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPI 213
           ++  N L++   + G +  AR+LFDKM  +D  S+N+MI  YV  G +  ARELFD    
Sbjct: 65  IYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSC 124

Query: 214 RERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLISWNSMLHGCVKCGKMDDA 269
           +     S  S+++GY +    ++ A+ +F  M     +    +  S+L  C   G +   
Sbjct: 125 KSSITWS--SIISGYCKFGCKVE-AFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTG 181

Query: 270 QALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFD--EMPKRDVVACNAMMGGYV 323
           + +   + K     +V     ++D YAK   V  A  LF   E  +++ V   AM+ GY 
Sbjct: 182 EMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYA 241

Query: 324 RNGYSMKALEIFDNM-----QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
           +NG   KA+E F  M     +C  Y  P       +L+A + +     G  +H ++ K  
Sbjct: 242 QNGDGYKAVEFFRYMHAQGVECNQYTFP------TILTACSSVLARCFGEQVHGFIVKSG 295

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
           F  N     AL+DMY+KCG ++NA  + E +ED  V  WN+++ G   HGL E A  L  
Sbjct: 296 FGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFK 355

Query: 439 EMERLSIEPDDITFTGLLNAC---------AHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
            M   +++ DD TF  +LN C          H  ++K G   ++L+              
Sbjct: 356 NMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSN------------ 403

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
            +VD+  + G ++ A  + E M +E + + W +L++ 
Sbjct: 404 ALVDMYAKTGDMDCAYTVFEKM-LEKDVISWTSLVTG 439


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 186/606 (30%), Positives = 314/606 (51%), Gaps = 46/606 (7%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           + L+++C TL  +  +HA ++ +    + HL T L+A ++S         A  +F   H+
Sbjct: 8   IALIKQCVTLEALKSLHASILKSHL--HPHLCTSLIAQYASLGSI---SHAYALFSTSHS 62

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
                + FLWN II+ +S+    + +L ++  ML  G+    F+   +LKAC  L   E 
Sbjct: 63  ----SNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFEL 118

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G + H  +    + SD+F+ N L+++Y R G  +F+RQ+F++M  R+ VS++SM+  Y  
Sbjct: 119 GARAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAH 178

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQ---FAWQIFEKMPERDLISWN 254
           +G  E    LF  M + E    +  S++N  A +    +   F   + +   + D    N
Sbjct: 179 NGRYEEGLLLFWRM-LNEGIAPNRGSIVNAMACIHREHEADDFCRVVIDNGLDSDQSVQN 237

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
           + +    +CG++D A+  F  +  +D+V+W +MI+ Y +            ++P      
Sbjct: 238 AAMGMYARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQA-----------DLP------ 280

Query: 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
                         + ALE+F  M+  L + PD  +L+ ++ A++ L        +H  +
Sbjct: 281 --------------INALELFKQMKL-LGIVPDSVTLLSLIHAVSNLASFQLARFVHGVI 325

Query: 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
            +  F  +     A+ID+Y KCG++E A K F+++   ++  W+ MI+G  +HG G  A 
Sbjct: 326 TRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHGHGREAL 385

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
            L  +M + SI+PD I F  +L+AC+H GL+ EG  CF+ M R   + P  +HY CMVD+
Sbjct: 386 CLFDQM-KASIKPDHIAFVMVLSACSHGGLIAEGWECFKAMNRDFGVTPRTEHYACMVDL 444

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           LGRAG +  A+  IE MP+ P+  +W  LL ACR + NL   E  A+HL  +D+ N   Y
Sbjct: 445 LGRAGRLSEAQAFIERMPITPDAGVWGALLGACRIHSNLETAETAARHLFNLDAENPGRY 504

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           +LLSN++A  G   +A  +R++MK R ++K  G + IE++  V+ F   D S  Q   IY
Sbjct: 505 ILLSNIYASSGKRKEADDIRALMKSRGVRKTVGHTIIEIKNKVYTFVAGDTSNPQTDLIY 564

Query: 615 YMLDNM 620
             L  +
Sbjct: 565 SELRKL 570


>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 178/498 (35%), Positives = 276/498 (55%), Gaps = 9/498 (1%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +LK CS L  +    Q H  +       D  L +  I      G+  ++  +F      D
Sbjct: 47  LLKQCSNLKHLH---QTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPD 103

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWN--SVLNGYAQLKS---GLQFAW 239
              YN++I           A  L++ +   +    +++   VL    +L +   G Q   
Sbjct: 104 IYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHC 163

Query: 240 QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDI 299
           Q        D+    +++     CG + +A+ LFD +  RDV  W  M+ GYAK+G VD 
Sbjct: 164 QAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDN 223

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           AR LF+ MP+R+V++  A++ GY +     +A+ +F  MQ E  + PD+ +++  LSA A
Sbjct: 224 ARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLE-EVEPDEIAMLAALSACA 282

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
            LG ++ G  IH Y++K   S       ALIDMY+KCG IE A++VF+ +E  SV  W +
Sbjct: 283 HLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTS 342

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           MI+GLA+HGLG  A ++   MER  I+P++ITF  +L+AC H GLV+ G   F+ M   +
Sbjct: 343 MIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKY 402

Query: 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPV 539
            ++P++QHYGCM+D+LGRAG ++ A+ L+  MP E N  IW +LL+A R + +  +G+  
Sbjct: 403 GIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQA 462

Query: 540 AKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHE 599
            +HLI ++  NS +Y LLSN++A    WN+A  VR +M++  +KK+PG S IE+   VHE
Sbjct: 463 LQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNNRVHE 522

Query: 600 FFVRDKSRLQVRDIYYML 617
           F   DK   Q   I+ +L
Sbjct: 523 FVAGDKLHPQSERIFEVL 540



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 143/501 (28%), Positives = 246/501 (49%), Gaps = 47/501 (9%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           L LL++C  L  ++Q H  M++ G  ++  L ++ + + SS      + ++  IF     
Sbjct: 45  LSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSS---LGFSHYSHSIF----T 97

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
            + + D +L+N IIK  S+     EA++++  +L + +  D +S   VLKA  RL  I  
Sbjct: 98  HKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHV 157

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G QIH         SD+ +   LI +Y  CG +  ARQLFD +  RD   +N+M+ GY K
Sbjct: 158 GRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAK 217

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLISW 253
            G++++AR LF+ MP  ERN+ISW +V+ GYAQ+    + A  +F +M     E D I+ 
Sbjct: 218 VGDVDNARHLFERMP--ERNVISWTAVIAGYAQMDRPNE-AITMFRRMQLEEVEPDEIAM 274

Query: 254 NSMLHGCVKCGKMDDAQAL---FDKMPKRDVVSWAN-MIDGYAKLGRVDIARRLFDEMPK 309
            + L  C   G ++  + +    DK     +V   N +ID YAK G+++ A  +F  M  
Sbjct: 275 LAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEH 334

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           + V+   +M+ G   +G   +ALE+F  M+    + P++ + V +LSA   +G ++ G  
Sbjct: 335 KSVITWTSMIDGLALHGLGREALEMFSCME-RNRIKPNEITFVAILSACCHVGLVEMGRW 393

Query: 370 IHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIH 427
             + +  K       +H   +ID+  + G ++ A ++   +  + +   W +++    IH
Sbjct: 394 YFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIH 453

Query: 428 GLGELAFDLLMEMERLSIEPDDI-TFTGLLNACA------HAGLVKE-----------GL 469
           G  EL    L  +  + +EP +   +T L N  A       AG+V++           G 
Sbjct: 454 GDAELGKQALQHL--IKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGG 511

Query: 470 LCFELMRRIH------KLEPE 484
            C E+  R+H      KL P+
Sbjct: 512 SCIEVNNRVHEFVAGDKLHPQ 532


>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 194/618 (31%), Positives = 310/618 (50%), Gaps = 29/618 (4%)

Query: 20  LLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           LL  C   K+L +  Q+H  +I+ GF ++  L  KLV  +S          A  +    H
Sbjct: 180 LLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYS----------AFNLLVDAH 229

Query: 77  AFREKKD---PFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLG 133
              E  +   PF WN +I +Y      ++AL  +  M+  G+  D F+   VLKAC    
Sbjct: 230 VITENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEEL 289

Query: 134 LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMID 193
            +  G ++H  +        L + N LIS+Y +CG +  AR LFDK+  RD+VS+NSMI 
Sbjct: 290 DLGFGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMIS 349

Query: 194 GYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGY---AQLKSGLQFAWQIFEKMPER 248
            Y   G    A ELF SM     E N+I WN++  GY      K  L+   Q+ +     
Sbjct: 350 VYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHL 409

Query: 249 DLISWNSMLHGC-----VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRL 303
           D ++    L  C      K GK   + A+     + D V   ++I  Y++   +  A  L
Sbjct: 410 DSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVK-NSLITMYSRCKDLKHAYLL 468

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           F  M  + +++ N+++ G      S +A  +   M     + P+  ++  VL   A++ +
Sbjct: 469 FQLMEAKSLISWNSIISGCCHMDRSEEASFLLREMLLS-GIEPNYVTIASVLPLCARVAN 527

Query: 364 IDKGVAIHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
           +  G   H Y+  ++ F  +     AL+DMY++ G +  A +VF+ + +     + +MI 
Sbjct: 528 LQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIA 587

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
           G  + G G+ A  L  EM    I+PD IT   +L+AC+H+GLV +G L FE MR ++ L 
Sbjct: 588 GYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLT 647

Query: 483 PELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKH 542
           P L+H+ CM D+ GRAG +  A+ +I +MP +P   +W TL+ ACR + N  +GE  A+ 
Sbjct: 648 PHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEK 707

Query: 543 LIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
           L+ M   N   YVL++NM+A  G WN   +VR  M++  ++K PGC+W+++      F V
Sbjct: 708 LLEMKPENPGYYVLIANMYAAAGCWNKLAKVRXFMRDLGVRKAPGCAWVDVGTGFSPFLV 767

Query: 603 RDKSRLQVRDIYYMLDNM 620
            D S     +IY +L+ +
Sbjct: 768 DDTSNANADEIYPLLEGL 785



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 200/416 (48%), Gaps = 17/416 (4%)

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI 182
           S +L +C+ +  + EG Q+HG +  + F     L   L++ Y     L  A  + +   I
Sbjct: 178 SSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNI 237

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSM---PIRERNLISWNSVLNGYAQLKSGLQFAW 239
                +N +I  YV++G  + A   +  M    IR  N  ++ SVL    + +  L F  
Sbjct: 238 LHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNF-TYPSVLKACGE-ELDLGFGK 295

Query: 240 QIFEKMPERDLISWNSMLHGCV-----KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKL 294
           ++ E +     I W+ ++H  +     KCGK+  A+ LFDK+P+RD VSW +MI  YA +
Sbjct: 296 EVHESI-NASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASM 354

Query: 295 GRVDIARRLFDEMPKRD----VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
           G  + A  LF  M   D    ++  N + GGY+R G    ALE+   M+ +   H D  +
Sbjct: 355 GMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMR-KXGSHLDSVA 413

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE 410
           L+I L A + +G    G  IH +  +  F        +LI MYS+C  +++A  +F+ +E
Sbjct: 414 LIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLME 473

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470
             S+  WN++I+G       E A  LL EM    IEP+ +T   +L  CA    ++ G  
Sbjct: 474 AKSLISWNSIISGCCHMDRSEEASFLLREMLLSGIEPNYVTIASVLPLCARVANLQHGKE 533

Query: 471 CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
               M R    +  L  +  +VD+  R+G +  AR +  DM  E + + + ++++ 
Sbjct: 534 FHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVF-DMLGERDKMTYTSMIAG 588


>gi|357167336|ref|XP_003581113.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Brachypodium distachyon]
          Length = 687

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 176/543 (32%), Positives = 298/543 (54%), Gaps = 40/543 (7%)

Query: 82  KDPFLWNAIIKTYSHGLDP--KEALVMFCLML-DNGVSVDKFSASLVLKACSRLGLIEEG 138
           +D F W A+I  Y+ G     ++A+ +F  ML D+GV  ++F+   VL+AC ++G ++ G
Sbjct: 158 RDVFAWTAVISGYARGASDCCRKAIGLFVRMLADHGVMPNEFTFDSVLRACVKMGALDFG 217

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
             +HG L +  F +D  + + L+ LY     +  A  +++ + +   ++ N++I G +  
Sbjct: 218 RSVHGCLLRSGFDTDKLITSALVDLYCSSDAVADALLVYNDLEMPSLITSNALIGGLISM 277

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLH 258
              + A+                                   +F +MPE D  ++N M+ 
Sbjct: 278 HMTDEAK----------------------------------IVFSQMPEHDSSTYNLMIK 303

Query: 259 GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP-KRDVVACNA 317
                GK++  Q +F+KMP+R++V+  +M+    + G+++   +LF+++  +R+ +  N+
Sbjct: 304 AYGIEGKLEQCQRMFEKMPRRNIVTLNSMMSVLLQNGKLEEGLKLFEQIKDERNTITWNS 363

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           M+ GY++N +S +AL++F  M+  L +    ++   +L A   +G I++G  +H +L K 
Sbjct: 364 MISGYIQNNHSSEALKLFVTMR-RLSIICSPSTFPTLLHACGTVGTIEQGKMVHAHLCKT 422

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLL 437
            F  NG  G AL+DMYSKCG + +A+  F  I   +V  W ++INGLA +G    A    
Sbjct: 423 PFESNGYVGTALVDMYSKCGCVSDALDAFCCITSPNVASWTSVINGLAHNGQCLKAIVEF 482

Query: 438 MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
             M R  I P++ITF GLL A + AGLV +G+  F  M R + L P ++HY C VD+LGR
Sbjct: 483 GRMLRHRINPNEITFLGLLMASSRAGLVNKGMRFFHSMER-YGLLPTVEHYTCAVDLLGR 541

Query: 498 AGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557
            G I  A   I  MP+  + V W  LL+AC    +L +GE VA+ L  M + + S+YV +
Sbjct: 542 NGRIIEAEKFISAMPVPADGVAWGALLTACWYSMDLEMGEKVAEKLFFMGTKHKSAYVAM 601

Query: 558 SNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           SN++A LG W D  +VR+ ++  + KK PGCSWI ++  VH F V D++  +  +IY ML
Sbjct: 602 SNIYAKLGKWEDVVKVRTRLRSLDAKKEPGCSWIGVKDTVHVFLVEDRNHPERDEIYLML 661

Query: 618 DNM 620
           +++
Sbjct: 662 EDL 664



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 167/365 (45%), Gaps = 23/365 (6%)

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLIS-----WNSVLNG 227
           AR+LFD M  R  V++N+M+ G+ + G+   A +L   M    R+ +S     + SVL  
Sbjct: 15  ARRLFDGMRRRTVVTWNAMVAGHARCGSFLDALDLAARM---HRSGVSPSEATFASVLGA 71

Query: 228 YA---QLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSW 284
            A   +L  G Q   Q+ +   E   +   S+L     C  +  A  LFD +  R+   W
Sbjct: 72  CARGRRLCVGAQVHCQVVKSGSENFEVVGASLLDFYSSCFDLSAAHMLFDTLHPRNERLW 131

Query: 285 ANMIDGYAKLGRVDIARRLFDEMP-KRDVVACNAMMGGYVRNGYSM--KALEIFDNMQCE 341
           + M+    +   +  A  L D MP  RDV A  A++ GY R       KA+ +F  M  +
Sbjct: 132 SPMVVALVRFNLLSDALDLLDRMPAPRDVFAWTAVISGYARGASDCCRKAIGLFVRMLAD 191

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIEN 401
             + P++ +   VL A  ++G +D G ++H  L +  F  +     AL+D+Y    ++ +
Sbjct: 192 HGVMPNEFTFDSVLRACVKMGALDFGRSVHGCLLRSGFDTDKLITSALVDLYCSSDAVAD 251

Query: 402 AIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461
           A+ V+  +E  S+   NA+I GL    + + A  +  +M     E D  T+  ++ A   
Sbjct: 252 ALLVYNDLEMPSLITSNALIGGLISMHMTDEAKIVFSQMP----EHDSSTYNLMIKAYGI 307

Query: 462 AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWR 521
            G +++    FE M R       +     M+ +L + G +E    L E +  E N + W 
Sbjct: 308 EGKLEQCQRMFEKMPR-----RNIVTLNSMMSVLLQNGKLEEGLKLFEQIKDERNTITWN 362

Query: 522 TLLSA 526
           +++S 
Sbjct: 363 SMISG 367



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 92/418 (22%), Positives = 180/418 (43%), Gaps = 65/418 (15%)

Query: 20  LLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +LR C  +  ++    +H  ++ +GF  +  +T+ LV  + SS      +        Y+
Sbjct: 204 VLRACVKMGALDFGRSVHGCLLRSGFDTDKLITSALVDLYCSS------DAVADALLVYN 257

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
              E       NA+I          EA ++F  M ++    D  + +L++K         
Sbjct: 258 DL-EMPSLITSNALIGGLISMHMTDEAKIVFSQMPEH----DSSTYNLMIK--------- 303

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
                       A+G +              G LE  +++F+KM  R+ V+ NSM+   +
Sbjct: 304 ------------AYGIE--------------GKLEQCQRMFEKMPRRNIVTLNSMMSVLL 337

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI----S 252
           ++G +E   +LF+ +   ERN I+WNS+++GY Q     + A ++F  M    +I    +
Sbjct: 338 QNGKLEEGLKLFEQIK-DERNTITWNSMISGYIQNNHSSE-ALKLFVTMRRLSIICSPST 395

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVVS----WANMIDGYAKLGRVDIARRLFDEMP 308
           + ++LH C   G ++  + +   + K    S       ++D Y+K G V  A   F  + 
Sbjct: 396 FPTLLHACGTVGTIEQGKMVHAHLCKTPFESNGYVGTALVDMYSKCGCVSDALDAFCCIT 455

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
             +V +  +++ G   NG  +KA+  F  M     ++P++ + + +L A ++ G ++KG+
Sbjct: 456 SPNVASWTSVINGLAHNGQCLKAIVEFGRM-LRHRINPNEITFLGLLMASSRAGLVNKGM 514

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMING 423
                +E+       +H    +D+  + G I  A K    +    DG    W A++  
Sbjct: 515 RFFHSMERYGLLPTVEHYTCAVDLLGRNGRIIEAEKFISAMPVPADGVA--WGALLTA 570



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 129/336 (38%), Gaps = 61/336 (18%)

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
           G    ARRLFD M +R VV  NAM+ G+ R G  + AL++   M     + P +A+   V
Sbjct: 10  GDTAAARRLFDGMRRRTVVTWNAMVAGHARCGSFLDALDLAARMH-RSGVSPSEATFASV 68

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
           L A A+   +  G  +H  + K         G +L+D YS C  +  A  +F+ +   + 
Sbjct: 69  LGACARGRRLCVGAQVHCQVVKSGSENFEVVGASLLDFYSSCFDLSAAHMLFDTLHPRNE 128

Query: 415 DHWNAMINGL---------------------------AIHGLGELAFDLLMEMERL---- 443
             W+ M+  L                            I G    A D   +   L    
Sbjct: 129 RLWSPMVVALVRFNLLSDALDLLDRMPAPRDVFAWTAVISGYARGASDCCRKAIGLFVRM 188

Query: 444 ----SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG 499
                + P++ TF  +L AC   G +  G       R +H     L   G   D L  + 
Sbjct: 189 LADHGVMPNEFTFDSVLRACVKMGALDFG-------RSVHGC---LLRSGFDTDKLITSA 238

Query: 500 HIE--AARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIG--------MDSS 549
            ++   + + + D  +  ND+   +L+++     N  +G  ++ H+          M   
Sbjct: 239 LVDLYCSSDAVADALLVYNDLEMPSLITS-----NALIGGLISMHMTDEAKIVFSQMPEH 293

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKL 585
           +SS+Y L+   +   G     +R+   M  RN+  L
Sbjct: 294 DSSTYNLMIKAYGIEGKLEQCQRMFEKMPRRNIVTL 329


>gi|297837203|ref|XP_002886483.1| hypothetical protein ARALYDRAFT_338156 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332324|gb|EFH62742.1| hypothetical protein ARALYDRAFT_338156 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1243

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 179/532 (33%), Positives = 293/532 (55%), Gaps = 32/532 (6%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D F WN +I  Y+      EAL++F  M +     +  S S ++      G +      
Sbjct: 478 RDSFSWNTMISGYAKNRRISEALLLFEKMPER----NAVSWSAMITGFCHNGEVNRAFD- 532

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS------VSYNSMIDGY 195
             L R++       L   L++  ++   LE A  +  + G  DS       +YN++I GY
Sbjct: 533 --LFRRMPVKDSSSL-CALVAGLIKNERLEEAAWVLGQYGSLDSGREDLVYAYNTLIVGY 589

Query: 196 VKSGNIESARELFDSMP-----------IRER---NLISWNSVLNGYAQLKSGLQFAWQI 241
            + G +E+AR LFD +P            RER   N++SWNS++  Y ++   +  A  +
Sbjct: 590 GQRGQVEAARCLFDQIPDLCDDDDHGGAFRERFRRNVVSWNSMIKAYLKVGDVVS-ARLL 648

Query: 242 FEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIAR 301
           F++M +RD ISWN+M+ G V   +MDDA ALF +MP RD  SW  M+ GYA +G +++AR
Sbjct: 649 FDQMKDRDTISWNTMIDGYVHVSRMDDAFALFSEMPNRDAHSWNMMVSGYASVGNLELAR 708

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
             F++ P++++V+ N+++  Y +N    +A+++F  M  +    PD  +L  +LS    L
Sbjct: 709 HYFEKTPEKNIVSWNSIIAAYDKNKDYKEAVDVFIRMNIDGE-KPDPHTLTSLLSVSTGL 767

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAM 420
            ++  G+ +H+ + K        H  ALI MYS+CG I  + ++F++++    V  WNA+
Sbjct: 768 VNLRLGMQMHQIVVKTVIPDVPVHN-ALITMYSRCGEIMESRRIFDEMKLKREVITWNAI 826

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           I G A HG    A +L   M+   I P  ITF  +LNACAHAGLV E    F  M  ++K
Sbjct: 827 IGGYAFHGNASEALNLFWSMKCYGIHPSHITFVSVLNACAHAGLVDEAKEQFLSMMSVYK 886

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           +EP+++HY  +V+++   G  E A  +I+ MP EP+  +W  LL ACR Y N+ +    A
Sbjct: 887 IEPQMEHYSSLVNVISGQGQFEEAMYVIKSMPFEPDKTVWGALLDACRIYNNVGLAHVAA 946

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           + +  ++  +S+ YVLL NM+A +G+W++A +VR  M+ + +KK  G SW++
Sbjct: 947 EAMSRLEPESSTPYVLLYNMYADMGLWDEASQVRMNMESKRIKKERGSSWVD 998



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 122/456 (26%), Positives = 215/456 (47%), Gaps = 86/456 (18%)

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
           R G I E  +I   L       ++   N +IS YV+   +  AR+LFD+M  RD V++N+
Sbjct: 396 RSGYIAEAREIFEKLE----ARNIVTWNTMISGYVKRREMTQARKLFDEMPERDVVTWNA 451

Query: 191 MIDGYVKSGNI---ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
           MI GYV  G I   E AR+LFD MP   R+  SWN++++GYA+ +  +  A  +FEKMPE
Sbjct: 452 MISGYVSCGGIRFLEEARKLFDEMP--SRDSFSWNTMISGYAKNRR-ISEALLLFEKMPE 508

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRD--------------------------- 280
           R+ +SW++M+ G    G+++ A  LF +MP +D                           
Sbjct: 509 RNAVSWSAMITGFCHNGEVNRAFDLFRRMPVKDSSSLCALVAGLIKNERLEEAAWVLGQY 568

Query: 281 ----------VVSWANMIDGYAKLGRVDIARRLFDEMP----------------KRDVVA 314
                     V ++  +I GY + G+V+ AR LFD++P                +R+VV+
Sbjct: 569 GSLDSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCDDDDHGGAFRERFRRNVVS 628

Query: 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
            N+M+  Y++ G  + A  +FD M+       D  S   ++     +  +D   A+   +
Sbjct: 629 WNSMIKAYLKVGDVVSARLLFDQMK-----DRDTISWNTMIDGYVHVSRMDDAFALFSEM 683

Query: 375 -EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
             +D  S N      ++  Y+  G++E A   FE+  + ++  WN++I     +   + A
Sbjct: 684 PNRDAHSWN-----MMVSGYASVGNLELARHYFEKTPEKNIVSWNSIIAAYDKNKDYKEA 738

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE-----PELQHY 488
            D+ + M     +PD  T T LL+       V  GL+   L  ++H++      P++  +
Sbjct: 739 VDVFIRMNIDGEKPDPHTLTSLLS-------VSTGLVNLRLGMQMHQIVVKTVIPDVPVH 791

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
             ++ +  R G I  +R + ++M ++   + W  ++
Sbjct: 792 NALITMYSRCGEIMESRRIFDEMKLKREVITWNAII 827



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 117/407 (28%), Positives = 196/407 (48%), Gaps = 72/407 (17%)

Query: 154 LFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPI 213
           L+  +CL  LY        +  L    G R +   N  ++  ++SG I  ARE+F+ +  
Sbjct: 360 LYRSSCLKCLYANSFSTSVSSSL----GFRAT---NKELNQMIRSGYIAEAREIFEKL-- 410

Query: 214 RERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGK---MDDAQ 270
             RN+++WN++++GY + +   Q A ++F++MPERD+++WN+M+ G V CG    +++A+
Sbjct: 411 EARNIVTWNTMISGYVKRREMTQ-ARKLFDEMPERDVVTWNAMISGYVSCGGIRFLEEAR 469

Query: 271 ALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMK 330
            LFD+MP RD  SW  MI GYAK  R+  A  LF++MP+R+ V+ +AM+ G+  NG   +
Sbjct: 470 KLFDEMPSRDSFSWNTMISGYAKNRRISEALLLFEKMPERNAVSWSAMITGFCHNGEVNR 529

Query: 331 ALEIFDNMQCELYLHPDDASLVIVLSA-------------IAQLGHIDKGVAIHRYLEKD 377
           A ++F  M  +     D +SL  +++              + Q G +D G       E  
Sbjct: 530 AFDLFRRMPVK-----DSSSLCALVAGLIKNERLEEAAWVLGQYGSLDSG------REDL 578

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED----------------GSVDHWNAMI 421
            ++ N      LI  Y + G +E A  +F+QI D                 +V  WN+MI
Sbjct: 579 VYAYN-----TLIVGYGQRGQVEAARCLFDQIPDLCDDDDHGGAFRERFRRNVVSWNSMI 633

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM--RRIH 479
                 G    A  L  +M+    + D I++  +++   H   + +    F  M  R  H
Sbjct: 634 KAYLKVGDVVSARLLFDQMK----DRDTISWNTMIDGYVHVSRMDDAFALFSEMPNRDAH 689

Query: 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
                   +  MV      G++E AR+  E  P E N V W ++++A
Sbjct: 690 S-------WNMMVSGYASVGNLELARHYFEKTP-EKNIVSWNSIIAA 728



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 184/418 (44%), Gaps = 89/418 (21%)

Query: 77  AFREK--KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
           AFRE+  ++   WN++IK Y    D   A ++F  M D                      
Sbjct: 617 AFRERFRRNVVSWNSMIKAYLKVGDVVSARLLFDQMKDR--------------------- 655

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
                             D    N +I  YV    ++ A  LF +M  RD+ S+N M+ G
Sbjct: 656 ------------------DTISWNTMIDGYVHVSRMDDAFALFSEMPNRDAHSWNMMVSG 697

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIF-------EKMPE 247
           Y   GN+E AR  F+  P  E+N++SWNS++  Y + K   + A  +F       EK   
Sbjct: 698 YASVGNLELARHYFEKTP--EKNIVSWNSIIAAYDKNKDYKE-AVDVFIRMNIDGEKPDP 754

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
             L S  S+  G V          +  K    DV     +I  Y++ G +  +RR+FDEM
Sbjct: 755 HTLTSLLSVSTGLVNLRLGMQMHQIVVKTVIPDVPVHNALITMYSRCGEIMESRRIFDEM 814

Query: 308 P-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
             KR+V+  NA++GGY  +G + +AL +F +M+C   +HP   + V VL+A A  G +D+
Sbjct: 815 KLKREVITWNAIIGGYAFHGNASEALNLFWSMKC-YGIHPSHITFVSVLNACAHAGLVDE 873

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
                    K+QF       ++++ +Y          K+  Q+E     H+++++N ++ 
Sbjct: 874 A--------KEQF-------LSMMSVY----------KIEPQME-----HYSSLVNVISG 903

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
            G  E A  ++  M     EPD   +  LL+AC     V    +  E M R   LEPE
Sbjct: 904 QGQFEEAMYVIKSM---PFEPDKTVWGALLDACRIYNNVGLAHVAAEAMSR---LEPE 955



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 151/349 (43%), Gaps = 70/349 (20%)

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
           N  L+  ++ G + +A+ +F+K+  R++V+W  MI GY K   +  AR+LFDEMP+RDVV
Sbjct: 388 NKELNQMIRSGYIAEAREIFEKLEARNIVTWNTMISGYVKRREMTQARKLFDEMPERDVV 447

Query: 314 ACNAMMGGYVRNG---YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
             NAM+ GYV  G   +  +A ++FD M                                
Sbjct: 448 TWNAMISGYVSCGGIRFLEEARKLFDEMP------------------------------- 476

Query: 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
                +D FS N      +I  Y+K   I  A+ +FE++ + +   W+AMI G   +G  
Sbjct: 477 ----SRDSFSWN-----TMISGYAKNRRISEALLLFEKMPERNAVSWSAMITGFCHNGEV 527

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH-YG 489
             AFDL     R+ ++ D  +   L+        ++E          +     +L + Y 
Sbjct: 528 NRAFDLF---RRMPVK-DSSSLCALVAGLIKNERLEEAAWVLGQYGSLDSGREDLVYAYN 583

Query: 490 CMVDILGRAGHIEAARNLIEDMP---------------MEPNDVIWRTLLSACRNYENLN 534
            ++   G+ G +EAAR L + +P                  N V W +++ A      L 
Sbjct: 584 TLIVGYGQRGQVEAARCLFDQIPDLCDDDDHGGAFRERFRRNVVSWNSMIKA-----YLK 638

Query: 535 VGEPVAKHLI--GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581
           VG+ V+  L+   M   ++ S+  + + +  +   +DA  + S M  R+
Sbjct: 639 VGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMDDAFALFSEMPNRD 687



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 135/289 (46%), Gaps = 20/289 (6%)

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
           E AR+ F K      +K+   WN+II  Y    D KEA+ +F  M  +G   D  + + +
Sbjct: 705 ELARHYFEK----TPEKNIVSWNSIIAAYDKNKDYKEAVDVFIRMNIDGEKPDPHTLTSL 760

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI-RD 184
           L   + L  +  G+Q+H ++ K     D+ + N LI++Y RCG +  +R++FD+M + R+
Sbjct: 761 LSVSTGLVNLRLGMQMHQIVVKTVI-PDVPVHNALITMYSRCGEIMESRRIFDEMKLKRE 819

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGL------Q 236
            +++N++I GY   GN   A  LF SM       + I++ SVLN  A   +GL      Q
Sbjct: 820 VITWNAIIGGYAFHGNASEALNLFWSMKCYGIHPSHITFVSVLNACAH--AGLVDEAKEQ 877

Query: 237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP-KRDVVSWANMIDG---YA 292
           F   +     E  +  ++S+++     G+ ++A  +   MP + D   W  ++D    Y 
Sbjct: 878 FLSMMSVYKIEPQMEHYSSLVNVISGQGQFEEAMYVIKSMPFEPDKTVWGALLDACRIYN 937

Query: 293 KLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
            +G   +A      +          +   Y   G   +A ++  NM+ +
Sbjct: 938 NVGLAHVAAEAMSRLEPESSTPYVLLYNMYADMGLWDEASQVRMNMESK 986


>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
 gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
          Length = 506

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 150/344 (43%), Positives = 226/344 (65%), Gaps = 1/344 (0%)

Query: 263 CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGY 322
           C  + DA+++F +M  RDVV+W  MI GY K G +  AR LFD MP+R+VV+   ++GGY
Sbjct: 127 CRHVADARSVFHEMAVRDVVAWNVMIAGYVKAGDLAHARELFDAMPERNVVSWTTVIGGY 186

Query: 323 VRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN 382
            +     +A+E+F  MQ E  + PD  +L+ VLSA   LG +D G  +HR++ +      
Sbjct: 187 AQMRRPEEAVEVFRRMQVE-GIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLRQE 245

Query: 383 GKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMER 442
                ++IDMY KCG IE A++VFE +E+ SV  W  +I G A+HGLG  A ++   MER
Sbjct: 246 IPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFRRMER 305

Query: 443 LSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIE 502
            ++ P+D+TF  +L+AC+H GL   G   F +M   ++++P+++HYGCMVD+LGRAG ++
Sbjct: 306 ENMAPNDVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPQVEHYGCMVDLLGRAGCLK 365

Query: 503 AARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA 562
            A++L++DMP++ N  IW  LL+A R + + ++GE    HLI ++ SNS +Y+LLSN+FA
Sbjct: 366 EAQDLVKDMPLKANAAIWGALLAASRTHGDADLGEEALVHLIELEPSNSGNYILLSNIFA 425

Query: 563 GLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
               W+D  ++R  MKER L+ +PG S IE++G+VHEF  RD S
Sbjct: 426 EQERWDDVSKLRKAMKERGLRNVPGASSIEVDGMVHEFTSRDGS 469



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 186/346 (53%), Gaps = 31/346 (8%)

Query: 119 KFSASLVLKACSRLG--LIEE---GLQIHGLL-RKVAFGSDLFLQNCLISLYVRCGYLEF 172
           +   S+ L+A +RL   L+     G Q+H LL R     SD  +   L+ LY  C ++  
Sbjct: 73  RVHPSVYLRAAARLPSHLLRRSLLGPQLHSLLLRTGHVASDTHVSASLVQLYCTCRHVAD 132

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK 232
           AR +F +M +RD V++N MI GYVK+G++  ARELFD+MP  ERN++SW +V+ GYAQ++
Sbjct: 133 ARSVFHEMAVRDVVAWNVMIAGYVKAGDLAHARELFDAMP--ERNVVSWTTVIGGYAQMR 190

Query: 233 SGLQFAWQIFEKMP----ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSW 284
              + A ++F +M     E D ++  S+L  C   G +D  + +   + +R    ++   
Sbjct: 191 RP-EEAVEVFRRMQVEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLM 249

Query: 285 ANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYL 344
            ++ID Y K G ++ A  +F+ M ++ VV    ++ G+  +G  ++A+E+F  M+ E  +
Sbjct: 250 NSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFRRMERE-NM 308

Query: 345 HPDDASLVIVLSAIAQLGHIDKG-----VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSI 399
            P+D + + +LSA + +G  D G     + + +Y  K Q     +H   ++D+  + G +
Sbjct: 309 APNDVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPQV----EHYGCMVDLLGRAGCL 364

Query: 400 ENAIKVFEQIE-DGSVDHWNAMINGLAIHG---LGELAFDLLMEME 441
           + A  + + +    +   W A++     HG   LGE A   L+E+E
Sbjct: 365 KEAQDLVKDMPLKANAAIWGALLAASRTHGDADLGEEALVHLIELE 410



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 136/307 (44%), Gaps = 44/307 (14%)

Query: 32  QIHARMITTGFI-KNTHLTTKLVASFSSSPCTPLTEFARYIFFKY--------------- 75
           Q+H+ ++ TG +  +TH++  LV  + +  C  + + AR +F +                
Sbjct: 99  QLHSLLLRTGHVASDTHVSASLVQLYCT--CRHVAD-ARSVFHEMAVRDVVAWNVMIAGY 155

Query: 76  -------HAFRE------KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSA 122
                  HA RE      +++   W  +I  Y+    P+EA+ +F  M   G+  D  + 
Sbjct: 156 VKAGDLAHA-RELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVAL 214

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI 182
             VL AC  LG ++ G  +H  + +     ++ L N +I +Y++CG +E A ++F+ M  
Sbjct: 215 LSVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEE 274

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSMPIRER---NLISWNSVLNGYAQLKSGLQFAW 239
           +  V++ ++I G+   G    A E+F  M  RE    N +++ ++L+  + +       W
Sbjct: 275 KSVVTWTTLIAGFALHGLGLQAVEMFRRME-RENMAPNDVTFLAILSACSHVGLTDLGRW 333

Query: 240 QIFEKMPERDLISWNSMLHGCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDGYAK 293
             F  M  +  I      +GC+     + G + +AQ L   MP K +   W  ++     
Sbjct: 334 -YFNIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMPLKANAAIWGALLAASRT 392

Query: 294 LGRVDIA 300
            G  D+ 
Sbjct: 393 HGDADLG 399


>gi|224058449|ref|XP_002299515.1| predicted protein [Populus trichocarpa]
 gi|222846773|gb|EEE84320.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 185/546 (33%), Positives = 295/546 (54%), Gaps = 32/546 (5%)

Query: 78  FREKKDPFL--WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
           F E  +P +  W   I T S   D  EA+ +F ++L  G+ V++++   VL     +  +
Sbjct: 32  FDEIAEPDVVSWTERIGTAS---DGHEAVELFRIVLSLGLDVNEYTLINVLSMIGGVKFL 88

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
             G QI  L  K  +   + + N L+S+Y +CG +  A ++F  M IRDSVS+NS+I   
Sbjct: 89  NAGKQIQALCHKTGYFQVVSVSNALVSMYGKCGQICDACRVFYNMIIRDSVSWNSLISAC 148

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
            ++G +  A E+F  M  RE   +S    ++  A +   +            + +I  +S
Sbjct: 149 SENGFVNQALEVFYQM--RE---LSLQPTIHTLASILEAVS------NSNNTKQVIQIHS 197

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           ++   VKCG M D   +            + +I  Y +   +D ++R+F E+ K ++V  
Sbjct: 198 LV---VKCGFMFDVSMI------------SCLITAYGRCNSMDESKRVFAEIDKVNLVHL 242

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           N M+  +VR GY   AL ++  +   L+   D  +  I+L A + +  +  G A+H  + 
Sbjct: 243 NTMITTFVRAGYYTDALALYQTIW-SLHRKVDSRTFSIILKACSAITDMQLGRAVHSLVL 301

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           K  F  +     ++ID+Y KCGSI  A K F      S+  WNAM+ G A HG  +  FD
Sbjct: 302 KTGFDQDSFVESSVIDIYCKCGSIGQAEKAFRSSSMNSLAAWNAMMMGYAHHGCYQEVFD 361

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           L  +M +  IEPD+IT+ G+L++C H GLVKE     + M  +H + P L+HY CM+D+L
Sbjct: 362 LFNKMSQFGIEPDEITYLGVLSSCCHGGLVKEARHYLDSMFELHGIIPHLEHYACMIDLL 421

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           GR G +E A+  I+ MP++P+  IW+ LLSAC  + ++ +G   A+ L+ +   N S+Y+
Sbjct: 422 GRVGLLEDAKKTIDHMPIQPDVHIWQILLSACNIHGHVELGRVAARKLLEIHPENESAYI 481

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY 615
           LLSN++A +GMWN   R+R  MKE+NL+K PG SWI++    H FFV D S  Q ++IY 
Sbjct: 482 LLSNLYASVGMWNAVGRLRKEMKEKNLRKEPGSSWIQVGRKSHTFFVNDTSHPQSKEIYA 541

Query: 616 MLDNMW 621
            L  ++
Sbjct: 542 ELIRLY 547



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 194/438 (44%), Gaps = 55/438 (12%)

Query: 16  STLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           + L ++   K LN   QI A    TG+ +   ++  LV+ +    C  + +  R +F+  
Sbjct: 77  NVLSMIGGVKFLNAGKQIQALCHKTGYFQVVSVSNALVSMYG--KCGQICDACR-VFYNM 133

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
                 +D   WN++I   S      +AL +F  M +  +     + + +L+A S     
Sbjct: 134 II----RDSVSWNSLISACSENGFVNQALEVFYQMRELSLQPTIHTLASILEAVSNSNNT 189

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
           ++ +QIH L+ K  F  D+ + +CLI+ Y RC  ++ ++++F ++   + V  N+MI  +
Sbjct: 190 KQVIQIHSLVVKCGFMFDVSMISCLITAYGRCNSMDESKRVFAEIDKVNLVHLNTMITTF 249

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
           V++G    A  L+ ++                           W +  K+  R   +++ 
Sbjct: 250 VRAGYYTDALALYQTI---------------------------WSLHRKVDSR---TFSI 279

Query: 256 MLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           +L  C     M   +A+   + K    +D    +++ID Y K G +  A + F       
Sbjct: 280 ILKACSAITDMQLGRAVHSLVLKTGFDQDSFVESSVIDIYCKCGSIGQAEKAFRSSSMNS 339

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           + A NAMM GY  +G   +  ++F+ M  +  + PD+ + + VLS+    G + +     
Sbjct: 340 LAAWNAMMMGYAHHGCYQEVFDLFNKMS-QFGIEPDEITYLGVLSSCCHGGLVKEA---- 394

Query: 372 RYLEKDQFSLNG-----KHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLA 425
           R+     F L+G     +H   +ID+  + G +E+A K  + +     V  W  +++   
Sbjct: 395 RHYLDSMFELHGIIPHLEHYACMIDLLGRVGLLEDAKKTIDHMPIQPDVHIWQILLSACN 454

Query: 426 IHG---LGELAFDLLMEM 440
           IHG   LG +A   L+E+
Sbjct: 455 IHGHVELGRVAARKLLEI 472



 Score = 42.4 bits (98), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 5/140 (3%)

Query: 388 ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP 447
           A++ MY++CG   +AIKVF++I +  V  W   I   +    G  A +L   +  L ++ 
Sbjct: 14  AVMSMYARCGREVDAIKVFDEIAEPDVVSWTERIGTASD---GHEAVELFRIVLSLGLDV 70

Query: 448 DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNL 507
           ++ T   +L+       +  G     L  +    +  +     +V + G+ G I  A  +
Sbjct: 71  NEYTLINVLSMIGGVKFLNAGKQIQALCHKTGYFQV-VSVSNALVSMYGKCGQICDACRV 129

Query: 508 IEDMPMEPNDVIWRTLLSAC 527
             +M +  + V W +L+SAC
Sbjct: 130 FYNMIIR-DSVSWNSLISAC 148


>gi|224096616|ref|XP_002310672.1| predicted protein [Populus trichocarpa]
 gi|222853575|gb|EEE91122.1| predicted protein [Populus trichocarpa]
          Length = 551

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 193/572 (33%), Positives = 300/572 (52%), Gaps = 59/572 (10%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           IH +++T GF  N HL+TKL+  +S       T  AR +F +      ++    W+A I 
Sbjct: 19  IHNQILTNGFASNIHLSTKLIIFYSK---LGDTVSARKVFDR----MPERTVVSWSAQIS 71

Query: 93  TYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGS 152
            YS     ++AL++F  ML  G   ++F+   VL+AC+ L  ++ G+QI G L K  F S
Sbjct: 72  GYSQNGCYQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQIQGCLEKSRFAS 131

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           +L +Q+ L+ L+ +CG                                +E A  LF  M 
Sbjct: 132 NLIVQSALLDLHSKCG-------------------------------KMEDASYLFGMM- 159

Query: 213 IRERNLISWNSVLNGYA-QLKSGLQFAWQIFEKMPER----DLISWNSMLHGCVKCGKMD 267
             ER+++SWN+++  YA Q  SG  F  ++F  M +     DL ++ S+L      G   
Sbjct: 160 -EERDVVSWNAIIGAYAVQGFSGDSF--RMFRSMMQEGMSPDLFTFGSVLKAS---GMAS 213

Query: 268 DA-------QALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMG 320
           D        Q +        +    ++ID YAK   +  A  L+  MP +D+++C A+M 
Sbjct: 214 DVIRVCQIHQLIIQLGYGSHISLSGSLIDAYAKCESLASAHCLYKSMPMKDMISCTALMT 273

Query: 321 GYVRNG-YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF 379
           GY R+  YS KAL++F  +Q ++++  DD  L  + +  A +  +  G  IH    K + 
Sbjct: 274 GYARDSNYSSKALDLFKEIQ-QMHMKIDDVILCSMFNICANISSLSVGRQIHALALKCKP 332

Query: 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLME 439
           + +   G ALIDMY+K G I++A + F ++E+ +V  W ++I G   HG G  A  L  +
Sbjct: 333 TYDVAMGNALIDMYAKSGEIKDANRAFNEMEEKNVISWTSLITGYGSHGHGHEAIALFKK 392

Query: 440 MERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG 499
           ME   ++P+DITF  LL AC H GL  EG  CF  M   + + P  +H+ CMVD+  R G
Sbjct: 393 MEYEGLKPNDITFLSLLFACNHCGLTGEGWECFNNMISKYNILPRAEHFSCMVDLFARGG 452

Query: 500 HIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559
            +E A NLI  M ++PN  +W  +L AC  Y N+ + E  A HL  MD  NS +YV+L++
Sbjct: 453 LLEEAYNLINKMNIKPNASLWGAILGACYIYGNMPLAEEAAIHLFKMDPENSVNYVVLAD 512

Query: 560 MFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           ++A  G W++A ++R +M+ERNLKK PG S+I
Sbjct: 513 IYAAAGSWDNAWKMRKLMEERNLKKAPGYSFI 544


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 178/491 (36%), Positives = 274/491 (55%), Gaps = 11/491 (2%)

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
           LQIH  L +        L   L   Y   G+L  +  LF +    +   +  +I+ +   
Sbjct: 40  LQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHF 99

Query: 199 GNIESARELFDSM---PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
                A   +  M   PI+  N  + +S+L       +    +  I   +     +S   
Sbjct: 100 DLFHHALSYYSQMLTHPIQP-NAFTLSSLLKACTLHPARAVHSHAIKFGLSSHLYVS-TG 157

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           ++    + G +  AQ LFD MP+R +VS+  M+  YAK G +  AR LF+ M  +DVV  
Sbjct: 158 LVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCW 217

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELY------LHPDDASLVIVLSAIAQLGHIDKGVA 369
           N M+ GY ++G   +AL  F  M   +       + P++ ++V VLS+  Q+G ++ G  
Sbjct: 218 NVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKW 277

Query: 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
           +H Y+E +   +N + G AL+DMY KCGS+E+A KVF+ +E   V  WN+MI G  IHG 
Sbjct: 278 VHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGF 337

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
            + A  L  EM  + ++P DITF  +L ACAHAGLV +G   F+ M+  + +EP+++HYG
Sbjct: 338 SDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYG 397

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549
           CMV++LGRAG ++ A +L+  M +EP+ V+W TLL ACR + N+++GE +A+ L+    +
Sbjct: 398 CMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLA 457

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQ 609
           +S +YVLLSNM+A    W    +VRSMMK   ++K PGCS IE++  VHEF   D+   +
Sbjct: 458 SSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDRRHPR 517

Query: 610 VRDIYYMLDNM 620
            +DIY ML+ M
Sbjct: 518 SKDIYSMLEKM 528



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 141/328 (42%), Gaps = 44/328 (13%)

Query: 2   FVSANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVAS------ 55
           + S     P      TL  L K  TL+    +H+  I  G   + +++T LV +      
Sbjct: 108 YYSQMLTHPIQPNAFTLSSLLKACTLHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGD 167

Query: 56  -------FSSSPCTPLTEFARYI--FFKYHAFREK---------KDPFLWNAIIKTYSHG 97
                  F + P   L  +   +  + K+    E          KD   WN +I  Y+  
Sbjct: 168 VASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQH 227

Query: 98  LDPKEALVMF-------CLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAF 150
             P EALV F           +  V  ++ +   VL +C ++G +E G  +H  +     
Sbjct: 228 GCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGI 287

Query: 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDS 210
             ++ +   L+ +Y +CG LE AR++FD M  +D V++NSMI GY   G  + A +LF  
Sbjct: 288 KVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHE 347

Query: 211 M---PIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLISWNSMLHGCV----- 261
           M    ++  + I++ +VL   A   +GL    W++F+ M +   +      +GC+     
Sbjct: 348 MCCIGVKPSD-ITFVAVLTACAH--AGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLG 404

Query: 262 KCGKMDDAQALFDKMP-KRDVVSWANMI 288
           + G+M +A  L   M  + D V W  ++
Sbjct: 405 RAGRMQEAYDLVRSMEVEPDPVLWGTLL 432


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 188/532 (35%), Positives = 287/532 (53%), Gaps = 19/532 (3%)

Query: 113 NGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF 172
            G ++    A+ +L  C+         +IH    + +   D  +   L   Y   G L+ 
Sbjct: 18  GGGALTADRAAALLAGCAS---ASRAAEIHAAAVRASVDQDKAVAFRLQRAYAASGRLDL 74

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLI----SWNSVLNGY 228
           A  L  +     +V Y S I  +   G   +A  L   M +    L+    + ++ L   
Sbjct: 75  AVALLRRTPDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAHTLSASLPAC 134

Query: 229 AQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM-PKRDVVSWANM 287
             L  G        +     +     ++L    + G+   A+ALFD M P   VVS   M
Sbjct: 135 GCLAVGRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAM 194

Query: 288 IDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD 347
           +  YAK+G++D AR LFD +P++D+V  NAMM GY ++G   +AL +F  M     + PD
Sbjct: 195 LSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQM-LRSGVEPD 253

Query: 348 DASLVIVLSAIAQLGHIDKGVAIHRYL----EKDQFSLNGKHGVALIDMYSKCGSIENAI 403
           + S+V+ LSA+AQLG  + G  +H ++     + +  LN + G AL+DMY KCGS+E A+
Sbjct: 254 EVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAV 313

Query: 404 KVFEQIEDGS---VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460
            VF  +  G    V  WNAMING A+HG    A +   ++    + P DITF G+LNAC+
Sbjct: 314 AVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDITFIGVLNACS 373

Query: 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIW 520
           H+GLV EG   F  M   + + P+++HYGCMVD+LGRAG +E A +L++ M  +P+  +W
Sbjct: 374 HSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMW 433

Query: 521 RTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580
            +LL ACR ++NL +G+ VA +L+G   +NS +YVLLSNM+A  G W +  RVRSMM+  
Sbjct: 434 ASLLGACRLHKNLALGQRVADYLVGNGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRAS 493

Query: 581 NLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVATSCTH 632
            ++K PGCS +E+   V EF   D+S  +  +IY  L+ +   +S+A +  H
Sbjct: 494 GVQKEPGCSAVEVGRRVVEFVAGDRSHPRSAEIYAKLEEV---NSIARARGH 542



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 109/226 (48%), Gaps = 22/226 (9%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +KD   WNA++  Y+    P EAL +F  ML +GV  D+ S  L L A ++LG  E G  
Sbjct: 216 RKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRW 275

Query: 141 IHGLL----RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI---RDSVSYNSMID 193
           +H  +    R+     +  +   L+ +Y +CG LE A  +F  +G    RD V++N+MI+
Sbjct: 276 LHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMIN 335

Query: 194 GYVKSGNIESARELFDSMPIRERNL----ISWNSVLNGYAQLKSGL-QFAWQIFEKMPER 248
           GY   G    A E F  +  R + L    I++  VLN  +   SGL      +F  M E 
Sbjct: 336 GYAMHGRSREALEAFGQL--RAQGLWPTDITFIGVLNACSH--SGLVDEGRALFAAMEEE 391

Query: 249 DLISWNSMLHGCV-----KCGKMDDAQALFDKM-PKRDVVSWANMI 288
             I      +GC+     + G++++A  L   M  K D   WA+++
Sbjct: 392 YGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLL 437


>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 694

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 177/509 (34%), Positives = 289/509 (56%), Gaps = 18/509 (3%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGV-SVDKFSASLVLKACSRLGLIEEGLQ 140
           +D   WN +++ Y    D   A  +F      GV S +  S   +L    R G I E  +
Sbjct: 196 RDMVSWNLMLEGYVRAGDVDSAAGLFA-----GVPSPNVVSWVTLLNGYCRAGRIGEARE 250

Query: 141 IHGLL--RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
           +   +  R VA        N ++S Y+R  ++E A +LF +M  ++S+S+ +MI   V+ 
Sbjct: 251 LFDRIPDRNVA------AWNVMLSGYLRLSHMEEAYKLFTEMPDKNSISWTTMISALVRG 304

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLH 258
           G ++ A++L D MP    +  +  ++++GY Q K  +  A  IF+ +  RD + WN+M+ 
Sbjct: 305 GKLQEAKDLLDKMPFD--SFAAKTALMHGYLQSKM-IDDARLIFDGLEVRDAVCWNTMIS 361

Query: 259 GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
           G V CG +D+A  LF +MP +D+VSW  MI GYA  G++  A  +F +M +R+ V+ N++
Sbjct: 362 GYVHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAVGIFRKMNQRNTVSWNSV 421

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
           + G+V+NG  ++AL+ F  M+ +     D ++    LSA A L  +  G   H  L +  
Sbjct: 422 ISGFVQNGLCVEALQHFVLMRRDAK-RADWSTYACCLSACADLAALHVGRQFHSLLARSG 480

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
           +  +   G ALI  Y+KCG I  A +VF+++    +  WNA+I+G A +G G  A  +  
Sbjct: 481 YIGDSFAGNALISAYAKCGRILEARQVFDEMPAPDIVSWNALIDGYASNGHGTEAISVFR 540

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
           EME   + PD++TF G+L+AC+HAGL+ EG   F  M + + L P  +HY CMVD+LGR+
Sbjct: 541 EMEDNDVRPDEVTFVGVLSACSHAGLIDEGFDFFNSMTKDYALRPVAEHYACMVDLLGRS 600

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           G +  A  +I+ M ++PN  +W  +L ACR ++N  + +  A+ L  ++   +S+YVLLS
Sbjct: 601 GRLSEAFEIIQGMQVQPNAGVWGAMLGACRVHKNHELAQLAAEKLYELEPHKTSNYVLLS 660

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPG 587
           N+ A  G W++A+ +R  +KER + K PG
Sbjct: 661 NITAEAGKWDEAQNMRVFIKERGVHKTPG 689



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 131/472 (27%), Positives = 209/472 (44%), Gaps = 85/472 (18%)

Query: 118 DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLF 177
           +  S + ++ ACS  G + +   +   +       D F    ++S Y R G L  AR   
Sbjct: 72  NTVSWNAMIAACSDHGRVADARDLFDAMP----ARDGFSWTLMVSCYARAGELGLARDAL 127

Query: 178 DKM-GIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQ 236
           D+M G + +  YN+MI GY K G  + A  L   MP  +  +ISWNSVL G  +    + 
Sbjct: 128 DRMPGDKCTACYNAMISGYAKHGRFDDAVALLREMPAPD--IISWNSVLVGLTR-NGEMV 184

Query: 237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR 296
            A + F++MP RD++SWN ML G V+ G +D A  LF  +P  +VVSW  +++GY + GR
Sbjct: 185 RAVKFFDEMPARDMVSWNLMLEGYVRAGDVDSAAGLFAGVPSPNVVSWVTLLNGYCRAGR 244

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASL--VIV 354
           +  AR LFD +P R+V A N M+ GY+R  +  +A ++F  M       PD  S+    +
Sbjct: 245 IGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEM-------PDKNSISWTTM 297

Query: 355 LSAIAQLGHID----------------KGVAIHRYLEKDQF--------SLNGKHGV--- 387
           +SA+ + G +                 K   +H YL+             L  +  V   
Sbjct: 298 ISALVRGGKLQEAKDLLDKMPFDSFAAKTALMHGYLQSKMIDDARLIFDGLEVRDAVCWN 357

Query: 388 ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP 447
            +I  Y  CG ++ A+ +F+Q+ +  +  WN MI G A  G    A  +  +M     + 
Sbjct: 358 TMISGYVHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAVGIFRKMN----QR 413

Query: 448 DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC----------------- 490
           + +++  +++     GL  E L  F LMRR  K   +   Y C                 
Sbjct: 414 NTVSWNSVISGFVQNGLCVEALQHFVLMRRDAK-RADWSTYACCLSACADLAALHVGRQF 472

Query: 491 ------------------MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
                             ++    + G I  AR + ++MP  P+ V W  L+
Sbjct: 473 HSLLARSGYIGDSFAGNALISAYAKCGRILEARQVFDEMP-APDIVSWNALI 523



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 161/316 (50%), Gaps = 17/316 (5%)

Query: 154 LFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPI 213
           ++  N  ++   R G L  AR+LFD M  R++VSYN+M+    + G I  AR LFD +P 
Sbjct: 11  VYRSNQELTRLARSGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIP- 69

Query: 214 RERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALF 273
             RN +SWN+++   +     +  A  +F+ MP RD  SW  M+    + G++  A+   
Sbjct: 70  -RRNTVSWNAMIAACSD-HGRVADARDLFDAMPARDGFSWTLMVSCYARAGELGLARDAL 127

Query: 274 DKMPKRDVVSWAN-MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
           D+MP     +  N MI GYAK GR D A  L  EMP  D+++ N+++ G  RNG  ++A+
Sbjct: 128 DRMPGDKCTACYNAMISGYAKHGRFDDAVALLREMPAPDIISWNSVLVGLTRNGEMVRAV 187

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDM 392
           + FD M        D  S  ++L    + G +D    +   +     S N    V L++ 
Sbjct: 188 KFFDEMPAR-----DMVSWNLMLEGYVRAGDVDSAAGLFAGVP----SPNVVSWVTLLNG 238

Query: 393 YSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITF 452
           Y + G I  A ++F++I D +V  WN M++G       E A+ L  EM     + + I++
Sbjct: 239 YCRAGRIGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEMP----DKNSISW 294

Query: 453 TGLLNACAHAGLVKEG 468
           T +++A    G ++E 
Sbjct: 295 TTMISALVRGGKLQEA 310



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 146/300 (48%), Gaps = 27/300 (9%)

Query: 232 KSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDG 290
           +SG L  A ++F+ MP R+ +S+N+ML    + G++ DA+ LFD++P+R+ VSW  MI  
Sbjct: 23  RSGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPRRNTVSWNAMIAA 82

Query: 291 YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD-- 348
            +  GRV  AR LFD MP RD  +   M+  Y R G    A +  D M       P D  
Sbjct: 83  CSDHGRVADARDLFDAMPARDGFSWTLMVSCYARAGELGLARDALDRM-------PGDKC 135

Query: 349 -ASLVIVLSAIAQLGHIDKGVAIHRYLE-KDQFSLNGKHGVALIDMYSKCGSIENAIKVF 406
            A    ++S  A+ G  D  VA+ R +   D  S N     +++   ++ G +  A+K F
Sbjct: 136 TACYNAMISGYAKHGRFDDAVALLREMPAPDIISWN-----SVLVGLTRNGEMVRAVKFF 190

Query: 407 EQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVK 466
           +++    +  WN M+ G    G  + A  L   +      P+ +++  LLN    AG + 
Sbjct: 191 DEMPARDMVSWNLMLEGYVRAGDVDSAAGLFAGVP----SPNVVSWVTLLNGYCRAGRIG 246

Query: 467 EGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           E     EL  RI   +  +  +  M+    R  H+E A  L  +MP + N + W T++SA
Sbjct: 247 EAR---ELFDRIP--DRNVAAWNVMLSGYLRLSHMEEAYKLFTEMP-DKNSISWTTMISA 300



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 164/373 (43%), Gaps = 33/373 (8%)

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
           N  L    + G++  A+ LFD MP R+ VS+  M+   A+ GR+  ARRLFDE+P+R+ V
Sbjct: 15  NQELTRLARSGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPRRNTV 74

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
           + NAM+     +G    A ++FD M        D  S  +++S  A+ G +         
Sbjct: 75  SWNAMIAACSDHGRVADARDLFDAMPAR-----DGFSWTLMVSCYARAGELGLARDALDR 129

Query: 374 LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
           +  D+ +       A+I  Y+K G  ++A+ +  ++    +  WN+++ GL  +G    A
Sbjct: 130 MPGDKCTACYN---AMISGYAKHGRFDDAVALLREMPAPDIISWNSVLVGLTRNGEMVRA 186

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493
                EM       D +++  +L     AG V      F  +       P +  +  +++
Sbjct: 187 VKFFDEMP----ARDMVSWNLMLEGYVRAGDVDSAAGLFAGVP-----SPNVVSWVTLLN 237

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS 553
              RAG I  AR L + +P + N   W  +LS    Y  L+  E   K    M   NS S
Sbjct: 238 GYCRAGRIGEARELFDRIP-DRNVAAWNVMLSG---YLRLSHMEEAYKLFTEMPDKNSIS 293

Query: 554 YVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
           +  + +     G   +A+ +        L K+P  S+     ++H +    +S++ + D 
Sbjct: 294 WTTMISALVRGGKLQEAKDL--------LDKMPFDSFAAKTALMHGYL---QSKM-IDDA 341

Query: 614 YYMLDNMWTPDSV 626
             + D +   D+V
Sbjct: 342 RLIFDGLEVRDAV 354



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 135/366 (36%), Gaps = 102/366 (27%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLM----------------------------- 110
           E +D   WN +I  Y H     EA+V+F  M                             
Sbjct: 349 EVRDAVCWNTMISGYVHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAVGIFR 408

Query: 111 -----------------LDNGVSVDKFSASLVLK-----------AC-----SRLGLIEE 137
                            + NG+ V+     ++++           AC     + L  +  
Sbjct: 409 KMNQRNTVSWNSVISGFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSACADLAALHV 468

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G Q H LL +  +  D F  N LIS Y +CG +  ARQ+FD+M   D VS+N++IDGY  
Sbjct: 469 GRQFHSLLARSGYIGDSFAGNALISAYAKCGRILEARQVFDEMPAPDIVSWNALIDGYAS 528

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
           +G+   A  +F  M   E N +                             D +++  +L
Sbjct: 529 NGHGTEAISVFREM---EDNDV---------------------------RPDEVTFVGVL 558

Query: 258 HGCVKCGKMDDAQALFDKMPK----RDVVS-WANMIDGYAKLGRVDIARRLFDEMPKRDV 312
             C   G +D+    F+ M K    R V   +A M+D   + GR+  A  +   M  +  
Sbjct: 559 SACSHAGLIDEGFDFFNSMTKDYALRPVAEHYACMVDLLGRSGRLSEAFEIIQGMQVQPN 618

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELY-LHPDDASLVIVLSAI-AQLGHIDKGVAI 370
                 M G  R     K  E+      +LY L P   S  ++LS I A+ G  D+   +
Sbjct: 619 AGVWGAMLGACR---VHKNHELAQLAAEKLYELEPHKTSNYVLLSNITAEAGKWDEAQNM 675

Query: 371 HRYLEK 376
             ++++
Sbjct: 676 RVFIKE 681


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 188/535 (35%), Positives = 278/535 (51%), Gaps = 72/535 (13%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           +L L   +I+ Y R   L  A +LFD+M +RD VS+NSMI G +  GN+  A  LFD MP
Sbjct: 42  NLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIKGCLDCGNLGMATRLFDEMP 101

Query: 213 IRERNLISWNSVLNGY-----AQLKSGLQF--------AW-----------------QIF 242
             E+N+ISW +++NGY      +L   L          AW                 ++F
Sbjct: 102 --EKNVISWTTMVNGYLKFGRVELAQRLFLDMHVKDVAAWNAMVHGYFENGRVEEGVRLF 159

Query: 243 EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV-VSWA---------------- 285
           E+MP RD+ISW SM+ G    GK ++A  +F KM +  V  +W+                
Sbjct: 160 EEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVEFN 219

Query: 286 ----------------------NMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV 323
                                 ++I  YA   +++ A ++F+E   ++VV   A++  YV
Sbjct: 220 LGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYV 279

Query: 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG 383
            N     AL +F +M  ++   P+ ++  I L A   L  +DKG  IH    K     + 
Sbjct: 280 WNNKHQDALRVFGDMT-KMGALPNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDV 338

Query: 384 KHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
             G +L+ MY++CG++ +A+ VF  I +  +  WN++I G A HG G  A     +M R 
Sbjct: 339 FVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRR 398

Query: 444 SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503
            ++P++ITFTGLL+AC+ +G++ +G   FE + R        QHY CMVDILGR G ++ 
Sbjct: 399 GVDPNEITFTGLLSACSRSGMLLKGRCFFEYISRYKSNVLRPQHYACMVDILGRCGKLDE 458

Query: 504 ARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563
           A  L+  MP++ N +IW  LLSACR + NL V E  AKH++ ++ + SS+YVLLSN++A 
Sbjct: 459 AEELVRYMPVKANSMIWLALLSACRVHSNLEVAERAAKHILDLEPNCSSAYVLLSNIYAS 518

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
            G W D  R+R  MK+  L K PG SW+ L G  HEF   D+S      IY  LD
Sbjct: 519 AGRWADVSRMRVKMKQGGLVKQPGSSWVVLRGKKHEFLSADRSHPLSERIYEKLD 573



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 191/361 (52%), Gaps = 18/361 (4%)

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA 229
           L+ AR +FDK+   +   Y  MI GY ++  +  A +LFD M +R+  ++SWNS++ G  
Sbjct: 28  LDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRD--VVSWNSMIKGCL 85

Query: 230 QLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMID 289
                L  A ++F++MPE+++ISW +M++G +K G+++ AQ LF  M  +DV +W  M+ 
Sbjct: 86  DC-GNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDMHVKDVAAWNAMVH 144

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
           GY + GRV+   RLF+EMP RDV++  +M+GG   NG S +AL +F  M     + P  +
Sbjct: 145 GYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKM-LRSGVEPTWS 203

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           +   VLSA A     + GV +H ++ K     +    V+LI  Y+ C  IE+A K+F + 
Sbjct: 204 TFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNET 263

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
              +V  W A++     +   + A  +  +M ++   P+  TF+  L AC        GL
Sbjct: 264 LTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACC-------GL 316

Query: 470 LCFELMRRIHK------LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTL 523
              +  + IH       LE ++     +V +    G++ +A  +  ++  E + V W ++
Sbjct: 317 EALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNIN-EKDIVSWNSI 375

Query: 524 L 524
           +
Sbjct: 376 I 376



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 173/392 (44%), Gaps = 46/392 (11%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D   W ++I         +EAL +F  ML +GV     + + VL AC+       G+Q+
Sbjct: 165 RDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQV 224

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           HG + K+      F+   LI+ Y  C  +E A ++F++   ++ V + +++  YV +   
Sbjct: 225 HGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKH 284

Query: 202 ESARELFDSM------PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
           + A  +F  M      P +    I+  +   G   L  G +      +   E D+   NS
Sbjct: 285 QDALRVFGDMTKMGALPNQSTFSITLKACC-GLEALDKGKEIHTMAIKLGLETDVFVGNS 343

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           ++    +CG ++ A A+F  + ++D+VSW ++I G A+ G    A   F++M +R V   
Sbjct: 344 LVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGV--- 400

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
                                         P++ +   +LSA ++ G + KG     Y+ 
Sbjct: 401 -----------------------------DPNEITFTGLLSACSRSGMLLKGRCFFEYIS 431

Query: 376 KDQFS-LNGKHGVALIDMYSKCGSIENAIKV--FEQIEDGSVDHWNAMINGLAIHGLGEL 432
           + + + L  +H   ++D+  +CG ++ A ++  +  ++  S+  W A+++   +H   E+
Sbjct: 432 RYKSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKANSMI-WLALLSACRVHSNLEV 490

Query: 433 AFDLLMEMERLSIEPD-DITFTGLLNACAHAG 463
           A      +  L +EP+    +  L N  A AG
Sbjct: 491 AERAAKHI--LDLEPNCSSAYVLLSNIYASAG 520



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 133/280 (47%), Gaps = 18/280 (6%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           Q+H  ++  G   +  ++  L+  +++  C  + E A  IF +       K+   W A++
Sbjct: 223 QVHGHVVKLGCFFHEFISVSLITFYAN--CMKI-EHAHKIFNETLT----KNVVKWTALL 275

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
             Y      ++AL +F  M   G   ++ + S+ LKAC  L  +++G +IH +  K+   
Sbjct: 276 TAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLE 335

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
           +D+F+ N L+ +Y  CG +  A  +F  +  +D VS+NS+I G  + G    A   F+ M
Sbjct: 336 TDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQM 395

Query: 212 PIR--ERNLISWNSVLNGYAQLKSGLQFAWQ-IFEKMPERDLISWNSMLHGCV-----KC 263
             R  + N I++  +L+  +  +SG+    +  FE +            + C+     +C
Sbjct: 396 IRRGVDPNEITFTGLLSACS--RSGMLLKGRCFFEYISRYKSNVLRPQHYACMVDILGRC 453

Query: 264 GKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIARR 302
           GK+D+A+ L   MP K + + W  ++        +++A R
Sbjct: 454 GKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLEVAER 493


>gi|356519224|ref|XP_003528273.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Glycine max]
          Length = 805

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 195/648 (30%), Positives = 329/648 (50%), Gaps = 58/648 (8%)

Query: 20  LLRKCKTLNDV---NQIHARMI-TTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           +L+ C  L  V     +HA ++ T G  +  ++ T LV  +    C  + +  +     +
Sbjct: 160 VLKACGVLKWVRFGKGVHAFVVKTIGLKECVYVATSLVDMYGK--CGAVEDAGKV----F 213

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
               E+ D   WN+++ TY+     +EA+ +F  M   GV V   + S    AC+    +
Sbjct: 214 DEMSERND-VTWNSMVVTYAQNGMNQEAIRVFREMRLQGVEVTLVALSGFFTACANSEAV 272

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
            EG Q HGL        D  L + +++ Y + G +E A  +F  M ++D V++N ++ GY
Sbjct: 273 GEGRQGHGLAVVGGLELDNVLGSSIMNFYFKVGLIEEAEVVFRNMAVKDVVTWNLVVAGY 332

Query: 196 VKSGNIESAREL----------FDSMPIR---------------------------ERNL 218
            + G +E A E+          FD + +                            E ++
Sbjct: 333 AQFGMVEKALEMCCVMREEGLRFDCVTLSALLAVAADTRDLVLGMKAHAYCVKNDFEGDV 392

Query: 219 ISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP- 277
           +  + +++ YA+    +  A ++F  + ++D++ WN+ML  C + G   +A  LF +M  
Sbjct: 393 VVSSGIIDMYAKCGR-MDCARRVFSCVRKKDIVLWNTMLAACAEQGLSGEALKLFFQMQL 451

Query: 278 ---KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV----VACNAMMGGYVRNGYSMK 330
                +VVSW ++I G+ K G+V  AR +F EM    V    +    MM G V+NG+   
Sbjct: 452 ESVPPNVVSWNSLIFGFFKNGQVAEARNMFAEMCSSGVMPNLITWTTMMSGLVQNGFGSG 511

Query: 331 ALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI 390
           A+ +F  MQ ++ + P+  S+   LS    +  +  G AIH Y+ +   S +     +++
Sbjct: 512 AMMVFREMQ-DVGIRPNSMSITSALSGCTSMALLKHGRAIHGYVMRRDLSQSIHIITSIM 570

Query: 391 DMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
           DMY+KCGS++ A  VF+      +  +NAMI+  A HG    A  L  +ME+  I PD I
Sbjct: 571 DMYAKCGSLDGAKCVFKMCSTKELYVYNAMISAYASHGQAREALVLFKQMEKEGIVPDHI 630

Query: 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIED 510
           T T +L+AC+H GL+KEG+  F+ M    +++P  +HYGC+V +L   G ++ A   I  
Sbjct: 631 TLTSVLSACSHGGLMKEGIKVFKYMVSELQMKPSEEHYGCLVKLLANDGQLDEALRTILT 690

Query: 511 MPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDA 570
           MP  P+  I  +LL+AC    ++ + + +AK L+ +D  NS +YV LSN++A +G W+  
Sbjct: 691 MPSHPDAHILGSLLTACGQNNDIELADYIAKWLLKLDPDNSGNYVALSNVYAAVGKWDKV 750

Query: 571 RRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
             +R +MKE+ L+K+PGCSWIE+   +H F   D+S  +  +IY  LD
Sbjct: 751 SNLRGLMKEKGLRKIPGCSWIEVGQELHVFIASDRSHPKTEEIYVTLD 798



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 164/645 (25%), Positives = 278/645 (43%), Gaps = 88/645 (13%)

Query: 20  LLRKC---KTLNDVNQIHARMITTG--FIKNTHLTTKLVASFS----SSPCTPLTEFARY 70
           LL+ C   + L    Q+HA +I  G  F  N  + +KLV  ++    S P T L      
Sbjct: 57  LLQGCVYERALPLALQLHADVIKRGPTFALNDFVISKLVILYAKCGASEPATRL------ 110

Query: 71  IFFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA 128
                  FR+   P  F W AII  ++     +EAL  +  M  +G+  D F    VLKA
Sbjct: 111 -------FRDSPSPNVFSWAAIIGLHTRTGFCEEALFGYIKMQQDGLPPDNFVLPNVLKA 163

Query: 129 CSRLGLIEEGLQIHG-LLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           C  L  +  G  +H  +++ +     +++   L+ +Y +CG +E A ++FD+M  R+ V+
Sbjct: 164 CGVLKWVRFGKGVHAFVVKTIGLKECVYVATSLVDMYGKCGAVEDAGKVFDEMSERNDVT 223

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQ---LKSGLQFAWQIF 242
           +NSM+  Y ++G  + A  +F  M ++  E  L++ +      A    +  G Q      
Sbjct: 224 WNSMVVTYAQNGMNQEAIRVFREMRLQGVEVTLVALSGFFTACANSEAVGEGRQGHGLAV 283

Query: 243 EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
               E D +  +S+++   K G +++A+ +F  M  +DVV+W  ++ GYA+ G V+    
Sbjct: 284 VGGLELDNVLGSSIMNFYFKVGLIEEAEVVFRNMAVKDVVTWNLVVAGYAQFGMVE---- 339

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
                                      KALE+   M+ E  L  D  +L  +L+  A   
Sbjct: 340 ---------------------------KALEMCCVMR-EEGLRFDCVTLSALLAVAADTR 371

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
            +  G+  H Y  K+ F  +      +IDMY+KCG ++ A +VF  +    +  WN M+ 
Sbjct: 372 DLVLGMKAHAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARRVFSCVRKKDIVLWNTMLA 431

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
             A  GL   A  L  +M+  S+ P+ +++  L+      G V E    F  M     + 
Sbjct: 432 ACAEQGLSGEALKLFFQMQLESVPPNVVSWNSLIFGFFKNGQVAEARNMFAEMCS-SGVM 490

Query: 483 PELQHYGCMVDILGRAGHIEAARNL---IEDMPMEPNDVIWRTLLSACRNYENLNVGEPV 539
           P L  +  M+  L + G    A  +   ++D+ + PN +   + LS C +   L  G  +
Sbjct: 491 PNLITWTTMMSGLVQNGFGSGAMMVFREMQDVGIRPNSMSITSALSGCTSMALLKHGRAI 550

Query: 540 AKHLIGMDSSNSSSYVL-LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVH 598
             +++  D S S   +  + +M+A  G  + A+ V  M           CS  EL  V +
Sbjct: 551 HGYVMRRDLSQSIHIITSIMDMYAKCGSLDGAKCVFKM-----------CSTKELY-VYN 598

Query: 599 EFFVRDKSRLQVRDIYYMLDNM----WTPD-----SVATSCTHYG 634
                  S  Q R+   +   M      PD     SV ++C+H G
Sbjct: 599 AMISAYASHGQAREALVLFKQMEKEGIVPDHITLTSVLSACSHGG 643


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 191/611 (31%), Positives = 306/611 (50%), Gaps = 75/611 (12%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +    WN ++   +   D   ++ +F  M+ +GV +D ++ S V K+ S L  +  G Q+
Sbjct: 7   EKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQL 66

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           HG + K  FG    + N L++ Y++   ++ AR++FD+M  RD +S+NS+I+GYV +G  
Sbjct: 67  HGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLA 126

Query: 202 ESARELFDSMPIR--ERNLISWNSVLNGYA--QLKSGLQFAWQIFEKMP-ERDLISWNSM 256
           E    +F  M +   E +L +  SV  G A  +L S  +    I  K    R+    N++
Sbjct: 127 EKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTL 186

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR------ 310
           L    KCG +D A+A+F +M  R VVS+ +MI GYA+ G    A +LF+EM +       
Sbjct: 187 LDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDV 246

Query: 311 ---------------------------------DVVACNAMMGGYVRNG----------- 326
                                            D+   NA+M  Y + G           
Sbjct: 247 YTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSE 306

Query: 327 --------------------YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
                               Y+ +AL +F+ +  E    PD+ ++  VL A A L   DK
Sbjct: 307 MRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDK 366

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G  IH Y+ ++ +  +     +L+DMY+KCG++  A  +F+ I    +  W  MI G  +
Sbjct: 367 GREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGM 426

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           HG G+ A  L  +M +  IE D+I+F  LL AC+H+GLV EG   F +MR   K+EP ++
Sbjct: 427 HGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVE 486

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HY C+VD+L R G +  A   IE+MP+ P+  IW  LL  CR + ++ + E VA+ +  +
Sbjct: 487 HYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFEL 546

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
           +  N+  YVL++N++A    W   +R+R  + +R L+K PGCSWIE++G V+ F   D S
Sbjct: 547 EPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSS 606

Query: 607 RLQVRDIYYML 617
             +  +I   L
Sbjct: 607 NPETENIEAFL 617



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 170/357 (47%), Gaps = 43/357 (12%)

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKS- 233
           FD++ I  ++ +N +++   KSG+   +  LF  M     E +  +++ V   ++ L+S 
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 234 --GLQFAWQIFEK-MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDG 290
             G Q    I +    ER+ +  NS++   +K  ++D A+ +FD+M +RDV+SW ++I+ 
Sbjct: 61  HGGEQLHGFILKSGFGERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIIN- 118

Query: 291 YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
                                         GYV NG + K L +F  M     +  D A+
Sbjct: 119 ------------------------------GYVSNGLAEKGLSVFVQMLVS-GIEIDLAT 147

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE 410
           +V V +  A    I  G A+H    K  FS   +    L+DMYSKCG +++A  VF ++ 
Sbjct: 148 IVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMS 207

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470
           D SV  + +MI G A  GL   A  L  EME   I PD  T T +LN CA   L+ EG  
Sbjct: 208 DRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKR 267

Query: 471 CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSA 526
             E ++  + L  ++     ++D+  + G ++ A  +  +M ++  D+I W T++  
Sbjct: 268 VHEWIKE-NDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVK--DIISWNTIIGG 321



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 183/391 (46%), Gaps = 48/391 (12%)

Query: 78  FREKKDPFL--WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
           FRE  D  +  + ++I  Y+      EA+ +F  M + G+S D ++ + VL  C+R  L+
Sbjct: 203 FREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLL 262

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
           +EG ++H  +++   G D+F+ N L+ +Y +CG ++ A  +F +M ++D +S+N++I GY
Sbjct: 263 DEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGY 322

Query: 196 VKSGNIESARELFDSMPIRER---NLISWNSVLNGYAQLKS---GLQFAWQIFEKMPERD 249
            K+     A  LF+ +   +R   +  +   VL   A L +   G +    I       D
Sbjct: 323 SKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSD 382

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
               NS++    KCG +  A  LFD +  +D+VSW  MI GY                  
Sbjct: 383 RHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGM---------------- 426

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
                          +G+  +A+ +F+ M+ +  +  D+ S V +L A +  G +D+G  
Sbjct: 427 ---------------HGFGKEAIALFNQMR-QAGIEADEISFVSLLYACSHSGLVDEGWR 470

Query: 370 IHRYLEKD-QFSLNGKHGVALIDMYSKCGSIENAIKVFEQI---EDGSVDHWNAMINGLA 425
               +  + +     +H   ++DM ++ G +  A +  E +    D ++  W A++ G  
Sbjct: 471 FFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATI--WGALLCGCR 528

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLL 456
           IH   +LA  +  ++    +EP++  +  L+
Sbjct: 529 IHHDVKLAEKVAEKV--FELEPENTGYYVLM 557



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 128/316 (40%), Gaps = 41/316 (12%)

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           FDE+     +  N +M    ++G    ++ +F  M     +  D  +   V  + + L  
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSS-GVEMDSYTFSCVSKSFSSLRS 59

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           +  G  +H ++ K  F      G +L+  Y K   +++A KVF+++ +  V  WN++ING
Sbjct: 60  VHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 119

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLV----------------KE 467
              +GL E    + ++M    IE D  T   +   CA + L+                +E
Sbjct: 120 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE 179

Query: 468 GLLCFELMRRIHKL--------------EPELQHYGCMVDILGRAGHIEAARNLIEDMPM 513
              C  L+    K               +  +  Y  M+    R G    A  L E+M  
Sbjct: 180 DRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 239

Query: 514 E---PNDVIWRTLLSACRNYENLNVGEPVAKHL----IGMDSSNSSSYVLLSNMFAGLGM 566
           E   P+      +L+ C  Y  L+ G+ V + +    +G D   S++   L +M+A  G 
Sbjct: 240 EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNA---LMDMYAKCGS 296

Query: 567 WNDARRVRSMMKERNL 582
             +A  V S M+ +++
Sbjct: 297 MQEAELVFSEMRVKDI 312


>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Glycine max]
          Length = 518

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 173/492 (35%), Positives = 277/492 (56%), Gaps = 42/492 (8%)

Query: 141 IHGLLRKVAFGSDLFLQNCL--ISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
           ++GL   V F   L L   +  +        + +A Q+F ++   D+  +N+ I G  +S
Sbjct: 26  VNGLTSNVGFLRKLVLTTAMSMVGPNATSAVIRYALQMFAQIPQPDTFMWNTYIRGSSQS 85

Query: 199 GNIESARELFDSMPIRE-------------------------------------RNLISW 221
            +   A  L+  M  R                                       N++  
Sbjct: 86  HDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKLFWVNTGSAVHGRVLRLGFGSNVVVR 145

Query: 222 NSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV 281
           N++L  +A+    L+ A  IF+   + D+++W++++ G  + G +  A+ LFD+MPKRD+
Sbjct: 146 NTLLVFHAKCGD-LKVATDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEMPKRDL 204

Query: 282 VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
           VSW  MI  Y K G ++ ARRLFDE P +D+V+ NA++GGYV    + +ALE+FD M C 
Sbjct: 205 VSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYVLRNLNREALELFDEM-CG 263

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIH-RYLEKDQFSLNGKHGVALIDMYSKCGSIE 400
           +   PD+ +++ +LSA A LG ++ G  +H + +E ++  L+   G AL+DMY+KCG+I 
Sbjct: 264 VGECPDEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLSTLLGNALVDMYAKCGNIG 323

Query: 401 NAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460
            A++VF  I D  V  WN++I+GLA HG  E +  L  EM+   + PD++TF G+L AC+
Sbjct: 324 KAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKMTKVCPDEVTFVGVLAACS 383

Query: 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIW 520
           HAG V EG   F LM+  +K+EP ++H GC+VD+LGRAG ++ A N I  M +EPN ++W
Sbjct: 384 HAGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLKEAFNFIASMKIEPNAIVW 443

Query: 521 RTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580
           R+LL AC+ + ++ + +   + L+ M    S  YVLLSN++A  G W+ A  VR +M + 
Sbjct: 444 RSLLGACKVHGDVELAKRANEQLLRMRGDQSGDYVLLSNVYASQGEWDGAENVRKLMDDN 503

Query: 581 NLKKLPGCSWIE 592
            + K  G S++E
Sbjct: 504 GVTKNRGSSFVE 515



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 227/452 (50%), Gaps = 57/452 (12%)

Query: 30  VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE--KKDPFLW 87
           + QIHA MI  G   N     KLV + + S   P    A  I +    F +  + D F+W
Sbjct: 17  LKQIHALMIVNGLTSNVGFLRKLVLTTAMSMVGPNATSA-VIRYALQMFAQIPQPDTFMW 75

Query: 88  NAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRK 147
           N  I+  S   DP  A+ ++  M    V  D F+   VLKAC++L  +  G  +HG + +
Sbjct: 76  NTYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKLFWVNTGSAVHGRVLR 135

Query: 148 VAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAREL 207
           + FGS++ ++N L+  + +CG L+ A  +FD     D V+++++I GY + G++  AR+L
Sbjct: 136 LGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKL 195

Query: 208 FDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMD 267
           FD MP  +R+L+SWN ++  Y +    ++ A ++F++ P +D++SWN+++ G V      
Sbjct: 196 FDEMP--KRDLVSWNVMITVYTK-HGEMESARRLFDEAPMKDIVSWNALIGGYVLRNLNR 252

Query: 268 DAQALFDKM----------------------------------------PKRDVVSWANM 287
           +A  LFD+M                                         K   +    +
Sbjct: 253 EALELFDEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLSTLLGNAL 312

Query: 288 IDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD 347
           +D YAK G +  A R+F  +  +DVV+ N+++ G   +G++ ++L +F  M+    + PD
Sbjct: 313 VDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKMT-KVCPD 371

Query: 348 DASLVIVLSAIAQLGHIDKGVAIHRY--LEKDQFSLNG--KHGVALIDMYSKCGSIENAI 403
           + + V VL+A +  G++D+G   +RY  L K+++ +    +H   ++DM  + G ++ A 
Sbjct: 372 EVTFVGVLAACSHAGNVDEG---NRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLKEAF 428

Query: 404 KVFE--QIEDGSVDHWNAMINGLAIHGLGELA 433
                 +IE  ++  W +++    +HG  ELA
Sbjct: 429 NFIASMKIEPNAI-VWRSLLGACKVHGDVELA 459


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 192/612 (31%), Positives = 315/612 (51%), Gaps = 52/612 (8%)

Query: 14  TQSTLL-LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFAR 69
           +QST   + R C  L+      Q+H   + + F  ++ + T  +  ++   C  +++   
Sbjct: 238 SQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAK--CDRMSD--- 292

Query: 70  YIFFKYHAFREKKDPFL--WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
                +  F    +P    +NAII  Y+      +AL +F  +    +S D+ S S  L 
Sbjct: 293 ----AWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALT 348

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           ACS +    EG+Q+HGL  K   G ++ + N ++ +Y +CG L  A  +FD M  RD+VS
Sbjct: 349 ACSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVS 408

Query: 188 YNSMIDGYVKSGNIESARELFDSM--PIRERNLISWNSVLN---GYAQLKSGLQFAWQIF 242
           +N++I  + ++  I     LF SM     E +  ++ SV+    G   L  G++   +I 
Sbjct: 409 WNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIV 468

Query: 243 EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
           +     D    ++++    KCG + +A+ + D++ ++  VSW ++I G++   + + A+R
Sbjct: 469 KSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQR 528

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
            F +M +  V+                                PD+ +   VL   A + 
Sbjct: 529 YFSQMLEMGVI--------------------------------PDNFTYATVLDVCANMA 556

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
            I+ G  IH  + K     +      L+DMYSKCG+++++  +FE+        W+AMI 
Sbjct: 557 TIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMIC 616

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
             A HG GE A  L  EM+ L+++P+   F  +L ACAH G V +GL  F++M+  + L+
Sbjct: 617 AYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQSHYGLD 676

Query: 483 PELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKH 542
           P ++HY CMVD+LGR+  +  A  LIE M  E +DVIWRTLLS C+   N+ V E     
Sbjct: 677 PHMEHYSCMVDLLGRSDQVNEALKLIESMHFEADDVIWRTLLSNCKMQGNVEVAEKAFNS 736

Query: 543 LIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
           L+ +D  +SS+YVLL+N++A +GMW +  ++RS+MK   LKK PGCSWIE+   VH F V
Sbjct: 737 LLQLDPQDSSAYVLLANVYANVGMWGEVAKIRSIMKNCKLKKEPGCSWIEVRDEVHTFLV 796

Query: 603 RDKSRLQVRDIY 614
            DK+  +  +IY
Sbjct: 797 GDKAHPRSEEIY 808



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 147/554 (26%), Positives = 268/554 (48%), Gaps = 64/554 (11%)

Query: 119 KFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD 178
           KF+ S +L+ CS L  +  G Q H  +   +F   +++ NCL+  Y +   + +A ++FD
Sbjct: 6   KFTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFD 65

Query: 179 KMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QF 237
           +M  RD +S+N+MI GY + GN+  A+ LFD+MP  ER+++SWNS+L+ Y  L +G+ + 
Sbjct: 66  RMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMP--ERDVVSWNSLLSCY--LHNGVNRK 121

Query: 238 AWQIFEKMPE----RDLISWNSMLHGCVKC---GKMDDAQALFDKMP-KRDVVSWANMID 289
           + +IF +M       D  +++ +L  C      G       L  +M  + DVV+ + ++D
Sbjct: 122 SIEIFVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVD 181

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
            Y+K  ++D A R+F EMP+R++V  +A++ GYV+N   ++ L++F +M  ++ +    +
Sbjct: 182 MYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDM-LKVGMGVSQS 240

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           +   V  + A L     G  +H +  K  F+ +   G A +DMY+KC  + +A KVF  +
Sbjct: 241 TYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTL 300

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
            +     +NA+I G A    G  A ++   ++R  +  D+I+ +G L AC+      EG+
Sbjct: 301 PNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGI 360

Query: 470 LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM------------------ 511
               L  +   L   +     ++D+ G+ G +  A  + +DM                  
Sbjct: 361 QLHGLAVKC-GLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQN 419

Query: 512 ----------------PMEPNDVIWRTLLSACRNYENLNVGEP----VAKHLIGMDSSNS 551
                            MEP+D  + +++ AC   + LN G      + K  +G+D    
Sbjct: 420 EEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVG 479

Query: 552 SSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVR 611
           S+ V   +M+   GM  +A ++   ++E+        SW     ++  F  + +S    R
Sbjct: 480 SALV---DMYGKCGMLMEAEKIHDRLEEKTT-----VSW---NSIISGFSSQKQSENAQR 528

Query: 612 DIYYMLDNMWTPDS 625
               ML+    PD+
Sbjct: 529 YFSQMLEMGVIPDN 542



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 145/545 (26%), Positives = 237/545 (43%), Gaps = 78/545 (14%)

Query: 20  LLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSS-------------PCTP 63
           +L+KC   K LN   Q HA+MI T F+   ++   LV  +  S             P   
Sbjct: 12  ILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRMPHRD 71

Query: 64  LTEFARYIF---------FKYHAFRE--KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLD 112
           +  +   IF         F    F    ++D   WN+++  Y H    ++++ +F  M  
Sbjct: 72  VISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRS 131

Query: 113 NGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF 172
             +  D  + S+VLKACS +     GLQ+H L  ++ F +D+   + L+ +Y +C  L+ 
Sbjct: 132 LKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDG 191

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD-----SMPIRERNLISWNSVLNG 227
           A ++F +M  R+ V ++++I GYV++       +LF       M + +    S      G
Sbjct: 192 AFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAG 251

Query: 228 YAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANM 287
            +  K G Q      +     D I   + L    KC +M DA  +F+ +P          
Sbjct: 252 LSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPN--------- 302

Query: 288 IDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD 347
                               P R   + NA++ GY R    +KALEIF ++Q   YL  D
Sbjct: 303 --------------------PPRQ--SYNAIIVGYARQDQGLKALEIFQSLQ-RTYLSFD 339

Query: 348 DASLVIVLSAIAQL-GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVF 406
           + SL   L+A + + GH++ G+ +H    K     N      ++DMY KCG++  A  +F
Sbjct: 340 EISLSGALTACSVIKGHLE-GIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIF 398

Query: 407 EQIEDGSVDHWNAMINGLAIHGLGE---LAFDLLMEMERLSIEPDDITFTGLLNACAHAG 463
           + +E      WNA+I   A H   E       L + M R ++EPDD T+  ++ ACA   
Sbjct: 399 DDMERRDAVSWNAII---AAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQ 455

Query: 464 LVKEGLLCFELMRRIHKLEPELQHY--GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWR 521
            +  G+   E+  RI K    L  +    +VD+ G+ G +  A   I D   E   V W 
Sbjct: 456 ALNYGM---EIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEK-IHDRLEEKTTVSWN 511

Query: 522 TLLSA 526
           +++S 
Sbjct: 512 SIISG 516


>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 186/576 (32%), Positives = 305/576 (52%), Gaps = 47/576 (8%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L  C+++ ++NQ+H  MI +  I+N    ++L+   ++ P T    +AR +F        
Sbjct: 12  LENCRSMVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDC--- 68

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
               ++WN++I+ YS+  +P +AL+ +  ML  G S D F+   VLKACS L  I+ G  
Sbjct: 69  -PSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSC 127

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +HG + K  F  ++++  CL+ +Y+ CG + +  ++F+                      
Sbjct: 128 VHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNWGLRVFED--------------------- 166

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS-MLHG 259
                       I + N+++W S+++G+    +    A + F +M    +    + M+  
Sbjct: 167 ------------IPKLNVVAWGSLISGFVN-NNRFSDAIEAFREMQSIGVKPNETIMVDL 213

Query: 260 CVKCGKMDD--AQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNA 317
            V CG+  D   Q+ F+     +V+   ++ID YAK G +  AR LFD MP+R++V+ N+
Sbjct: 214 LVACGRCFDPYCQSKFE----FNVILATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNS 269

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           ++ GY +NG + +A+ +F +M  +L + PD  +   V+ A    G    G  IH Y+ K 
Sbjct: 270 IITGYSQNGDAEEAMCMFSDM-LDLGIAPDKVTFFSVIRASMIQGCSQLGQTIHAYVSKT 328

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLL 437
            F  +     AL++MY+K G+ E+A K+FE +E      W  +I GLA HG G  A  + 
Sbjct: 329 GFVKDAAIVCALVNMYAKTGNAESAKKMFEDLEKKDTIAWTVVIIGLASHGHGNKALSIF 388

Query: 438 MEM-ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
             M E  +  PD IT+ G+L AC+H GLV+EG   F  MR ++ LEP ++HYGCMVDIL 
Sbjct: 389 QRMQEEGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLYGLEPTVEHYGCMVDILS 448

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556
           RAG  E A  L++ MP++P   IW  LL+ C  +ENL++ + +   +   +   S  YVL
Sbjct: 449 RAGRFEEAERLVKTMPVQPTANIWGALLNGCEIHENLDLADRIRSMVSESEELGSGIYVL 508

Query: 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           LSN++A  G W D + +R  MK + + KL   S +E
Sbjct: 509 LSNIYAKAGRWADVKLIRESMKSKRVDKLLAHSSVE 544


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 204/695 (29%), Positives = 336/695 (48%), Gaps = 101/695 (14%)

Query: 2   FVSANYNQPCNSTQSTLLLLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSS 58
           FV  N+  PC        +++ C  + DV     +H   + T  + +  +   L+A +  
Sbjct: 192 FVPDNFTLPC--------VIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGK 243

Query: 59  SPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLML--DNGVS 116
                  E A  +F K      +++   WN+++         +E+  +F  +L  D G+ 
Sbjct: 244 ---FGFVESAVKVFDKM----PQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLM 296

Query: 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQL 176
            D  +   V+  C+R G +  G+  HGL  K+    +L + + L+ +Y +CGYL  AR L
Sbjct: 297 PDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVL 356

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM-----------------PIRERNL- 218
           FD    ++ +S+NSMI GY K  +   A EL   M                 P+ E  + 
Sbjct: 357 FDT-NEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQ 415

Query: 219 ---------------------ISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
                                +  N+ + GYA+  S L +A  +F  M  + + SWN+++
Sbjct: 416 FLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGS-LHYAEGVFCGMESKMVSSWNALI 474

Query: 258 HGCVKCGKMDDAQALFDKMP----KRDVVSWANMIDGYAKL------------------- 294
            G V+ G    A  L+  M     + D+ + A+++   A+L                   
Sbjct: 475 GGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFE 534

Query: 295 ----------------GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM 338
                           G++ +A+  FD M ++++V  N M+ G+ +N +   AL++F  M
Sbjct: 535 LDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQM 594

Query: 339 QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS 398
                + PD+ S++  L A +Q+  +  G  +H +  K   + +     +LIDMY+KCG 
Sbjct: 595 LSS-KIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGC 653

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
           +E +  +F+++       WN +I G  IHG G  A +L   M+     PD +TF  LL A
Sbjct: 654 MEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTA 713

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
           C HAGLV EGL     M+ +  ++P+L+HY C+VD+LGRAG +  A  L+ ++P +P+  
Sbjct: 714 CNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSR 773

Query: 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578
           IW +LLS+CRNY +L++GE VA  L+ +    + +YVL+SN +A LG W++ R++R  MK
Sbjct: 774 IWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMK 833

Query: 579 ERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
           E  L+K  GCSWIE+ G V  F V D+S LQ   I
Sbjct: 834 EIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKI 868



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 148/586 (25%), Positives = 242/586 (41%), Gaps = 145/586 (24%)

Query: 2   FVSANYNQPCNSTQSTL-----LLLRKCKTLNDVN---QIHARMITTGFIKN-THLTTKL 52
           F+ +N N   +S+ S       LLL+ C    ++    +IH  + T+   +N   L T+L
Sbjct: 76  FLQSNLNDVVSSSNSKPKQLIGLLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRL 135

Query: 53  VASFS--SSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLM 110
           V  +S   SP      F        +A R +K+ FLWNA++  Y      ++A+ +F  M
Sbjct: 136 VTMYSICDSPYDSCLVF--------NASR-RKNLFLWNALLSGYLRNSLFRDAVFVFVEM 186

Query: 111 LDNGVSV-DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY 169
           +     V D F+   V+KAC  +  +  G  +HG   K    SD+F+ N LI++      
Sbjct: 187 ISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAM------ 240

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA 229
                                    Y K G +ESA ++FD                    
Sbjct: 241 -------------------------YGKFGFVESAVKVFD-------------------- 255

Query: 230 QLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALF------DKMPKRDVVS 283
                         KMP+R+L+SWNS+++ C++ G  +++  LF      D+    DV +
Sbjct: 256 --------------KMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVAT 301

Query: 284 WANMI-----------------------------------DGYAKLGRVDIARRLFDEMP 308
              +I                                   D Y+K G +  AR LFD   
Sbjct: 302 MVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFD-TN 360

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ------LG 362
           +++V++ N+M+GGY ++     A E+   MQ E  +  ++ +L+ VL    +      L 
Sbjct: 361 EKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLK 420

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
            I      H +++ D+   N     A +  Y+KCGS+  A  VF  +E   V  WNA+I 
Sbjct: 421 EIHGYALRHGFIQSDELVAN-----AFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIG 475

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
           G   +G    A DL + M    +EPD  T   LL+ACA    +  G    E+   + +  
Sbjct: 476 GHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGK---EIHGSMLRNG 532

Query: 483 PELQHYGC--MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
            EL  + C  +V +  + G I  A+   ++M  E N V W T+++ 
Sbjct: 533 FELDEFICISLVSLYVQCGKILLAKLFFDNME-EKNLVCWNTMING 577


>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 540

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 167/479 (34%), Positives = 282/479 (58%), Gaps = 16/479 (3%)

Query: 155 FLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV--KSGN---IESARELFD 209
            L  C  S Y   G   +A  +F  +   D  +YN MI  Y+  +SG+      A  L+ 
Sbjct: 59  LLYVCSFSYY---GSFSYATNVFHMIKNPDLRAYNIMIRAYISMESGDDTHFCKALMLYK 115

Query: 210 SMPIRE--RNLISWNSVLNGYAQL---KSGLQFAWQIFEKMPERDLISWNSMLHGCVKCG 264
            M  ++   N +++  +L G  Q     +G     Q+ +    +D+   NS++   +  G
Sbjct: 116 QMFCKDIVPNCLTFPFLLKGCTQWLDGATGQAIHTQVIKFGFLKDVYVANSLISLYMAGG 175

Query: 265 KMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVR 324
            + +A+ +FD+M   DVV+W +M+ G  + G +D+A  LF +M  R+++  N+++ G  +
Sbjct: 176 LLSNARKVFDEMLVTDVVTWNSMVIGCLRNGGLDMAMDLFRKMNGRNIITWNSIITGLAQ 235

Query: 325 NGYSMKALEIFDNMQ--CELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN 382
            G + ++LE+F  MQ   +  + PD  ++  VLSA AQLG ID G  +H YL ++    +
Sbjct: 236 GGSAKESLELFHEMQILSDDMVKPDKITIASVLSACAQLGAIDHGKWVHGYLRRNGIECD 295

Query: 383 GKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMER 442
              G AL++MY KCG ++ A ++FE++ +     W  MI+  A+HGLG  AF+  +EME+
Sbjct: 296 VVIGTALVNMYGKCGDVQKAFEIFEEMPEKDASAWTVMISVFALHGLGWKAFNCFLEMEK 355

Query: 443 LSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIE 502
             ++P+ +TF GLL+ACAH+GLV++G  CF++M+R++ +EP++ HY CMVDIL RA   +
Sbjct: 356 AGVKPNHVTFVGLLSACAHSGLVEQGRWCFDVMKRVYSIEPQVYHYACMVDILSRARLFD 415

Query: 503 AARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA 562
            +  LI  MPM+P+  +W  LL  C+ + N+ +GE V  HLI ++  N + YV   +++A
Sbjct: 416 ESEILIRSMPMKPDVYVWGALLGGCQMHGNVELGEKVVHHLIDLEPHNHAFYVNWCDIYA 475

Query: 563 GLGMWNDARRVRSMMKERNL-KKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
             GM++ A+R+R++MKE+ + KK+PGCS IE+ G V EF     S L ++++  +L+ +
Sbjct: 476 KAGMFDAAKRIRNIMKEKRIEKKIPGCSMIEINGEVQEFSAGGSSELPMKELVLVLNGL 534



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 141/527 (26%), Positives = 254/527 (48%), Gaps = 57/527 (10%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNT---HLTTKLVASFSSSPCTPLTEFARYIFFKY- 75
           L+ +CK L ++ + H +++ +  +      +L T+L+   S         F+ Y  F Y 
Sbjct: 24  LIEQCKNLRELKKTHTQILKSPTLHTGDQYYLITRLLYVCS---------FSYYGSFSYA 74

Query: 76  -HAFREKKDPFL--WNAIIKTY---SHGLDPK--EALVMFCLMLDNGVSVDKFSASLVLK 127
            + F   K+P L  +N +I+ Y     G D    +AL+++  M    +  +  +   +LK
Sbjct: 75  TNVFHMIKNPDLRAYNIMIRAYISMESGDDTHFCKALMLYKQMFCKDIVPNCLTFPFLLK 134

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
            C++      G  IH  + K  F  D+++ N LISLY+  G L  AR++FD+M + D V+
Sbjct: 135 GCTQWLDGATGQAIHTQVIKFGFLKDVYVANSLISLYMAGGLLSNARKVFDEMLVTDVVT 194

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP- 246
           +NSM+ G +++G ++ A +LF  M    RN+I+WNS++ G AQ  S  + + ++F +M  
Sbjct: 195 WNSMVIGCLRNGGLDMAMDLFRKM--NGRNIITWNSIITGLAQGGSAKE-SLELFHEMQI 251

Query: 247 ------ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGR 296
                 + D I+  S+L  C + G +D  + +   + +     DVV    +++ Y K G 
Sbjct: 252 LSDDMVKPDKITIASVLSACAQLGAIDHGKWVHGYLRRNGIECDVVIGTALVNMYGKCGD 311

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           V  A  +F+EMP++D  A   M+  +  +G   KA   F  M+ +  + P+  + V +LS
Sbjct: 312 VQKAFEIFEEMPEKDASAWTVMISVFALHGLGWKAFNCFLEME-KAGVKPNHVTFVGLLS 370

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGK--HGVALIDMYSKCGSI-ENAIKVFEQIEDGS 413
           A A  G +++G      + K  +S+  +  H   ++D+ S+     E+ I +        
Sbjct: 371 ACAHSGLVEQGRWCFDVM-KRVYSIEPQVYHYACMVDILSRARLFDESEILIRSMPMKPD 429

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC---AHAGLVKEGLL 470
           V  W A++ G  +HG  EL   ++  +  + +EP +  F   +N C   A AG+      
Sbjct: 430 VYVWGALLGGCQMHGNVELGEKVVHHL--IDLEPHNHAF--YVNWCDIYAKAGMFDAAKR 485

Query: 471 CFELM--RRIHKLEPELQHYGC-MVDILGRAGHIEAARNLIEDMPME 514
              +M  +RI K  P     GC M++I G      A  +   ++PM+
Sbjct: 486 IRNIMKEKRIEKKIP-----GCSMIEINGEVQEFSAGGS--SELPMK 525


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 172/468 (36%), Positives = 272/468 (58%), Gaps = 12/468 (2%)

Query: 170 LEFARQLFDKMGIRDSVSYNSMID--GYVKSGNIESARELFDSMPIRERNLISWNSVLNG 227
           + +A  +FD     D   YN++I    +  + + +S  + F S+   ER + +  S    
Sbjct: 50  ISYAHMVFDHFPQPDLFLYNTIIKVLAFSTTSSADSFTK-FRSLIREERLVPNQYSFAFA 108

Query: 228 YAQLKSGL------QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV 281
           +    SG+      Q      +   E +L   N+++   V    + DA+ +FD  P RD+
Sbjct: 109 FKGCGSGVGVLEGEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDM 168

Query: 282 VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
            SW  M+ GYA+LG++D AR+LFDEMP++DVV+   M+ G ++ GY M+AL+IF NM  +
Sbjct: 169 YSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAK 228

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIEN 401
             + P++ +L   L+A A L  +D+G  +H Y++K+   +N +    LIDMY+KCG +E 
Sbjct: 229 -GMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEF 287

Query: 402 AIKVFEQIE--DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
           A K+F         V  WNAMI G A+HG  + A ++  +M+   + P+ +TF  LLNAC
Sbjct: 288 ASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNAC 347

Query: 460 AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI 519
           +H   V+EG   FE M   ++++PEL+HYGC+VD+LGRAG ++ A  +I  M + P+  I
Sbjct: 348 SHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAI 407

Query: 520 WRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579
           W  LLSAC+ +++  +GE V K +  +D ++   +VLL+N+++  G WN+AR +R  + E
Sbjct: 408 WGALLSACKIHKDAEMGERVGKIVKELDPNHLGCHVLLANIYSLTGNWNEARTLREKIAE 467

Query: 580 RNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVA 627
              KK PGCS IEL G+ H+F V D+S  Q + +Y  LD M T   +A
Sbjct: 468 SGKKKTPGCSSIELNGMFHQFLVGDRSHPQTKQLYLFLDEMITKLKIA 515



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 125/436 (28%), Positives = 227/436 (52%), Gaps = 38/436 (8%)

Query: 19  LLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAF 78
            LL  CK+   + Q+HAR+ITTG I +   T KL+   SS    P++ +A  +F  +   
Sbjct: 6   FLLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSI-FAPIS-YAHMVFDHF--- 60

Query: 79  REKKDPFLWNAIIKTYSHGL-DPKEALVMF-CLMLDNGVSVDKFSASLVLKAC-SRLGLI 135
             + D FL+N IIK  +       ++   F  L+ +  +  +++S +   K C S +G++
Sbjct: 61  -PQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVL 119

Query: 136 E-EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           E E +++H +  K+   ++LF+ N LI +YV   ++  AR++FD    RD  S+N M+ G
Sbjct: 120 EGEQVRVHAI--KLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSG 177

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL---- 250
           Y + G ++ AR+LFD MP  E++++SW ++++G  Q+   ++ A  IF  M  + +    
Sbjct: 178 YARLGKMDEARQLFDEMP--EKDVVSWTTMISGCLQVGYFME-ALDIFHNMLAKGMSPNE 234

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS----WANMIDGYAKLGRVDIARRLFDE 306
            +  S L  C     +D  + +   + K ++       A +ID YAK G ++ A +LF+ 
Sbjct: 235 YTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNS 294

Query: 307 MP--KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
            P  KR V   NAM+GG+  +G S +A+E+F+ M+ E  + P+  + V +L+A +    +
Sbjct: 295 NPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIE-KVSPNKVTFVALLNACSHGNRV 353

Query: 365 DKG------VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHW 417
           ++G      +A H Y  K +     +H   L+D+  + G ++ A ++   +     V  W
Sbjct: 354 EEGRYYFESMASH-YRVKPEL----EHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIW 408

Query: 418 NAMINGLAIHGLGELA 433
            A+++   IH   E+ 
Sbjct: 409 GALLSACKIHKDAEMG 424


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 205/691 (29%), Positives = 332/691 (48%), Gaps = 100/691 (14%)

Query: 6   NYNQPCNSTQSTLLLLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCT 62
           N+  PC        + + C  + DV     +HA  +  G   +  +   L+A +      
Sbjct: 195 NFTLPC--------VAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGK---C 243

Query: 63  PLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLML---DNGVSVDK 119
              E A  +F         ++   WN+++   S      E   +F  +L   + G+  D 
Sbjct: 244 GFVESAVKVF----ETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDV 299

Query: 120 FSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK 179
            +   V+ AC+ +G +  G+ +HGL  K+    ++ + N L+ +Y +CGYL  AR LFD 
Sbjct: 300 ATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDM 359

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLN------------- 226
            G ++ VS+N++I GY K G+     EL   M   E+  ++  +VLN             
Sbjct: 360 NGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLS 419

Query: 227 -----GYAQ----LK---------------SGLQFAWQIFEKMPERDLISWN-------- 254
                GYA     LK               S L  A ++F  M  + + SWN        
Sbjct: 420 LKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQ 479

Query: 255 ---------------------------SMLHGC-----VKCGKMDDAQALFDKMPKRDVV 282
                                      S+L  C     ++CGK      L + +   + +
Sbjct: 480 NGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFI 539

Query: 283 SWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
              +++  Y +   + + + +FD+M  + +V  N M+ G+ +N    +AL+ F  M    
Sbjct: 540 G-ISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSG- 597

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENA 402
            + P + ++  VL A +Q+  +  G  +H +  K   S +     ALIDMY+KCG +E +
Sbjct: 598 GIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQS 657

Query: 403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
             +F+++ +     WN +I G  IHG G  A +L   M+     PD  TF G+L AC HA
Sbjct: 658 QNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHA 717

Query: 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRT 522
           GLV EGL     M+ ++ ++P+L+HY C+VD+LGRAG +  A  L+ +MP EP+  IW +
Sbjct: 718 GLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSS 777

Query: 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
           LLS+CRNY +L +GE V+K L+ ++ + + +YVLLSN++AGLG W++ R+VR  MKE  L
Sbjct: 778 LLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGL 837

Query: 583 KKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
            K  GCSWIE+ G+V+ F V D S  + + I
Sbjct: 838 HKDAGCSWIEIGGMVYRFLVSDGSLSESKKI 868



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 125/472 (26%), Positives = 224/472 (47%), Gaps = 57/472 (12%)

Query: 13  STQSTLLLLRKC---KTLNDVNQIHARMITTGFIKN-THLTTKLVASFSSSPCTPLTEFA 68
           S ++  +LLR C   K ++   ++HA +  +  ++N   L+T+++A +S+  C   ++ +
Sbjct: 91  SKEAIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSA--CGSPSD-S 147

Query: 69  RYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLD-NGVSVDKFSASLVLK 127
           R +F    A +EK D FL+NA++  YS     ++A+ +F  +L    ++ D F+   V K
Sbjct: 148 RGVF---DAAKEK-DLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAK 203

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
           AC+ +  +E G  +H L  K    SD F+ N LI++Y                       
Sbjct: 204 ACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYG---------------------- 241

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM-- 245
                    K G +ESA ++F++M  R RNL+SWNSV+   ++   G      +F+++  
Sbjct: 242 ---------KCGFVESAVKVFETM--RNRNLVSWNSVMYACSE-NGGFGECCGVFKRLLI 289

Query: 246 PER-----DLISWNSMLHGCVKCGKMDDAQAL----FDKMPKRDVVSWANMIDGYAKLGR 296
            E      D+ +  +++  C   G++     +    F      +V    +++D Y+K G 
Sbjct: 290 SEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGY 349

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           +  AR LFD    ++VV+ N ++ GY + G      E+   MQ E  +  ++ +++ VL 
Sbjct: 350 LGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLP 409

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
           A +    +     IH Y  +  F  +     A +  Y+KC S++ A +VF  +E  +V  
Sbjct: 410 ACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSS 469

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
           WNA+I   A +G    + DL + M    ++PD  T   LL ACA    ++ G
Sbjct: 470 WNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCG 521



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 125/250 (50%), Gaps = 5/250 (2%)

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
           + DVV    +I  Y+  G    +R +FD   ++D+   NA++ GY RN     A+ +F  
Sbjct: 125 RNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLE 184

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
           +     L PD+ +L  V  A A +  ++ G A+H    K     +   G ALI MY KCG
Sbjct: 185 LLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCG 244

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHG-LGEL--AFDLLMEMERLSIEPDDITFTG 454
            +E+A+KVFE + + ++  WN+++   + +G  GE    F  L+  E   + PD  T   
Sbjct: 245 FVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVT 304

Query: 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPME 514
           ++ ACA  G V+ G++   L  ++   E E+     +VD+  + G++  AR L  DM   
Sbjct: 305 VIPACAAVGEVRMGMVVHGLAFKLGITE-EVTVNNSLVDMYSKCGYLGEARALF-DMNGG 362

Query: 515 PNDVIWRTLL 524
            N V W T++
Sbjct: 363 KNVVSWNTII 372


>gi|356519676|ref|XP_003528496.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 728

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 183/543 (33%), Positives = 292/543 (53%), Gaps = 39/543 (7%)

Query: 82  KDPFLWNAIIKTYSHGLDPKE-ALVMF-CLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           +D   W  +I  Y+   D  E AL +F C+   + V  ++F+   V++ C+RLG++  G 
Sbjct: 202 RDVVAWTTLISGYAKREDGCERALDLFGCMRRSSEVLPNEFTLDCVVRVCARLGVLRAGK 261

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY-NSMIDGYVKS 198
            +HGL  K     D  +   +   Y  C  ++ A+++++ MG + S++  NS+I G V  
Sbjct: 262 VVHGLCIKGGLDFDNSIGGAVTEFYCGCEAIDDAKRVYESMGGQASLNVANSLIGGLVSK 321

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLH 258
           G IE A EL                                 +F ++ E + +S+N M+ 
Sbjct: 322 GRIEEA-EL---------------------------------VFYELRETNPVSYNLMIK 347

Query: 259 GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP-KRDVVACNA 317
           G    G+ + ++ LF+KM   ++ S   MI  Y+K G +D A +LFD+   +R+ V+ N+
Sbjct: 348 GYAMSGQFEKSKRLFEKMSPENLTSLNTMISVYSKNGELDEAVKLFDKTKGERNYVSWNS 407

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           MM GY+ NG   +AL ++  M+  L +    ++  ++  A + L    +G  +H +L K 
Sbjct: 408 MMSGYIINGKYKEALNLYVAMR-RLSVDYSRSTFSVLFRACSCLCSFRQGQLLHAHLIKT 466

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLL 437
            F +N   G AL+D YSKCG +  A + F  I   +V  W A+ING A HGLG  A  L 
Sbjct: 467 PFQVNVYVGTALVDFYSKCGHLAEAQRSFISIFSPNVAAWTALINGYAYHGLGSEAILLF 526

Query: 438 MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
             M    I P+  TF G+L+AC HAGLV EGL  F  M+R + + P ++HY C+VD+LGR
Sbjct: 527 RSMLHQGIVPNAATFVGVLSACNHAGLVCEGLRIFHSMQRCYGVTPTIEHYTCVVDLLGR 586

Query: 498 AGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557
           +GH++ A   I  MP+E + +IW  LL+A   ++++ VGE  A+ L  +D +   ++V+L
Sbjct: 587 SGHLKEAEEFIIKMPIEADGIIWGALLNASWFWKDMEVGERAAEKLFSLDPNPIFAFVVL 646

Query: 558 SNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           SNM+A LG W    ++R  ++   L+K PGCSWIEL   +H F V DK+ L    IY  +
Sbjct: 647 SNMYAILGRWGQKTKLRKRLQSLELRKDPGCSWIELNNKIHLFSVEDKTHLYSDVIYATV 706

Query: 618 DNM 620
           +++
Sbjct: 707 EHI 709



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 115/412 (27%), Positives = 200/412 (48%), Gaps = 24/412 (5%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM--PIRE 215
           N  I+   + G LE AR LFD+M  R   S+N+MI GY   G    A  L   M      
Sbjct: 45  NISIAQRFKMGKLEEARHLFDQMPNRTVSSWNTMISGYSLLGRYPEALTLVSFMHRSCVA 104

Query: 216 RNLISWNSVLNGYAQLKS---GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
            N +S+++VL+  A+  S   G Q    + +   ER  +  +++L+ CV C  + +A+ +
Sbjct: 105 LNEVSFSAVLSACARSGSFLLGKQVHSLLLKSGYERFGLVGSALLYFCVHCCGIREAEVV 164

Query: 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV-RNGYSMKA 331
           F+++   + V W+ M+ GY K   +D A  +F++MP RDVVA   ++ GY  R     +A
Sbjct: 165 FEELRDGNQVLWSLMLAGYVKQDMMDDAMDMFEKMPVRDVVAWTTLISGYAKREDGCERA 224

Query: 332 LEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALID 391
           L++F  M+    + P++ +L  V+   A+LG +  G  +H    K     +   G A+ +
Sbjct: 225 LDLFGCMRRSSEVLPNEFTLDCVVRVCARLGVLRAGKVVHGLCIKGGLDFDNSIGGAVTE 284

Query: 392 MYSKCGSIENAIKVFEQI-EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
            Y  C +I++A +V+E +    S++  N++I GL   G  E A  +  E+     E + +
Sbjct: 285 FYCGCEAIDDAKRVYESMGGQASLNVANSLIGGLVSKGRIEEAELVFYELR----ETNPV 340

Query: 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIE 509
           ++  ++   A +G  ++    FE      K+ PE L     M+ +  + G ++ A  L +
Sbjct: 341 SYNLMIKGYAMSGQFEKSKRLFE------KMSPENLTSLNTMISVYSKNGELDEAVKLFD 394

Query: 510 DMPMEPNDVIWRTLLSA----CRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557
               E N V W +++S      +  E LN+   VA   + +D S S+  VL 
Sbjct: 395 KTKGERNYVSWNSMMSGYIINGKYKEALNL--YVAMRRLSVDYSRSTFSVLF 444



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 144/370 (38%), Gaps = 69/370 (18%)

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           ++IS N  +    K GK+++A+ LFD+MP R V SW  MI GY+ LGR   A  L   M 
Sbjct: 40  NVISTNISIAQRFKMGKLEEARHLFDQMPNRTVSSWNTMISGYSLLGRYPEALTLVSFM- 98

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            R  VA N                               + S   VLSA A+ G    G 
Sbjct: 99  HRSCVALN-------------------------------EVSFSAVLSACARSGSFLLGK 127

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS--------------- 413
            +H  L K  +   G  G AL+     C  I  A  VFE++ DG+               
Sbjct: 128 QVHSLLLKSGYERFGLVGSALLYFCVHCCGIREAEVVFEELRDGNQVLWSLMLAGYVKQD 187

Query: 414 ----------------VDHWNAMINGLAIHGLG-ELAFDLLMEMERLS-IEPDDITFTGL 455
                           V  W  +I+G A    G E A DL   M R S + P++ T   +
Sbjct: 188 MMDDAMDMFEKMPVRDVVAWTTLISGYAKREDGCERALDLFGCMRRSSEVLPNEFTLDCV 247

Query: 456 LNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEP 515
           +  CA  G+++ G +   L  +   L+ +    G + +       I+ A+ + E M  + 
Sbjct: 248 VRVCARLGVLRAGKVVHGLCIK-GGLDFDNSIGGAVTEFYCGCEAIDDAKRVYESMGGQA 306

Query: 516 NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRS 575
           +  +  +L+    +   +   E V   L     +N  SY L+   +A  G +  ++R+  
Sbjct: 307 SLNVANSLIGGLVSKGRIEEAELVFYEL---RETNPVSYNLMIKGYAMSGQFEKSKRLFE 363

Query: 576 MMKERNLKKL 585
            M   NL  L
Sbjct: 364 KMSPENLTSL 373



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 119/260 (45%), Gaps = 23/260 (8%)

Query: 14  TQSTL-LLLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFAR 69
           ++ST  +L R C  L    Q   +HA +I T F  N ++ T LV  +S   C  L E  R
Sbjct: 436 SRSTFSVLFRACSCLCSFRQGQLLHAHLIKTPFQVNVYVGTALVDFYSK--CGHLAEAQR 493

Query: 70  YIFFKYHAFREKKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA 128
                +       +   W A+I  Y+ HGL   EA+++F  ML  G+  +  +   VL A
Sbjct: 494 SFISIF-----SPNVAAWTALINGYAYHGLG-SEAILLFRSMLHQGIVPNAATFVGVLSA 547

Query: 129 CSRLGLIEEGLQI-HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSV 186
           C+  GL+ EGL+I H + R       +    C++ L  R G+L+ A +   KM I  D +
Sbjct: 548 CNHAGLVCEGLRIFHSMQRCYGVTPTIEHYTCVVDLLGRSGHLKEAEEFIIKMPIEADGI 607

Query: 187 SYNSMIDGYVKSGNIE----SARELF--DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQ 240
            + ++++      ++E    +A +LF  D  PI    ++S    + G    K+ L+   Q
Sbjct: 608 IWGALLNASWFWKDMEVGERAAEKLFSLDPNPIFAFVVLSNMYAILGRWGQKTKLRKRLQ 667

Query: 241 IFE--KMPERDLISWNSMLH 258
             E  K P    I  N+ +H
Sbjct: 668 SLELRKDPGCSWIELNNKIH 687


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 216/690 (31%), Positives = 331/690 (47%), Gaps = 89/690 (12%)

Query: 10  PCNSTQSTLLL-LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFA 68
           P N +  T LL     ++L     +HA++I +      ++   LV  ++   C  L E A
Sbjct: 4   PSNRSFFTALLQYTHNRSLQKGKALHAQIIKSS-SSCVYIANSLVNLYA--KCQRLRE-A 59

Query: 69  RYIFFKYHAFREKKDPFLWNAIIKTYS-HGLD-PKEALVMFCLMLDNGVSVDKFSASLVL 126
           +++F +     + KD   WN II  YS HG       + +F  M     + +  + + V 
Sbjct: 60  KFVFERI----QNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVF 115

Query: 127 KACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSV 186
            A S L     G   H +  K+    D+F+ + L+++Y + G    AR++FD M  R+SV
Sbjct: 116 TAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSV 175

Query: 187 SYNSMIDGYVKSGNIESARELFDSMPIRER--NLISWNSVL------------------- 225
           S+ +MI GY        A  LF  M   E   N   + SVL                   
Sbjct: 176 SWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIA 235

Query: 226 --NG--------------YAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDA 269
             NG              YA+  S L  A Q FE   +++ I+W++M+ G  + G  D A
Sbjct: 236 VKNGLLSIVSVGNALVTMYAKCGS-LDDALQTFETSSDKNSITWSAMITGYAQSGDSDKA 294

Query: 270 QALFDKMPKRDV------------------VSWAN---------------------MIDG 290
             LF  M    +                   +W                       ++D 
Sbjct: 295 LKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDM 354

Query: 291 YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
           YAK   +  AR+ FD + + D+V   +M+GGYV+NG +  AL ++  M+ E  L P++ +
Sbjct: 355 YAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGIL-PNELT 413

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE 410
           +  VL A + L  +++G  IH    K  F L    G AL  MY+KCG +++   VF ++ 
Sbjct: 414 MASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMP 473

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470
              V  WNAMI+GL+ +G G+ A +L  EM+    +PD +TF  +L+AC+H GLV+ G  
Sbjct: 474 ARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWG 533

Query: 471 CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNY 530
            F +M     ++P ++HY CMVDIL RAG ++ A    E   ++    +WR +L ACRNY
Sbjct: 534 YFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTESATIDHGMCLWRIILGACRNY 593

Query: 531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSW 590
            N  +G    + L+ + S  SS+YVLLS++++ LG W D  RVR MMK R + K PGCSW
Sbjct: 594 RNYELGAYAGEKLMELGSQESSAYVLLSSIYSALGRWEDVERVRRMMKLRGVSKEPGCSW 653

Query: 591 IELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           IEL+  VH F V+D+   Q+ DI+  L  +
Sbjct: 654 IELKSGVHVFVVKDQMHPQIGDIHVELRQL 683


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 178/493 (36%), Positives = 279/493 (56%), Gaps = 13/493 (2%)

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           Q H  L   A  S     N L+ L   C  L +A +LFD++   D   YN+MI  +  S 
Sbjct: 34  QTHAQLITTALISHPVSANKLLKL-AACASLSYAHKLFDQIPQPDLFIYNTMIKAHSLSP 92

Query: 200 N--------IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI 251
           +          S  +     P R   + ++++  NG   ++ G Q      +   E ++ 
Sbjct: 93  HSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLG-VQEGEQVRIHAVKVGLENNVF 151

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
             N+++    K G + ++Q +F     RD+ SW  +I  Y   G + +A+ LFD M +RD
Sbjct: 152 VVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERD 211

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           VV+ + ++ GYV+ G  M+AL+ F  M  ++   P++ +LV  L+A + L  +D+G  IH
Sbjct: 212 VVSWSTIIAGYVQVGCFMEALDFFHKM-LQIGPKPNEYTLVSALAACSNLVALDQGKWIH 270

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVF-EQIEDGSVDHWNAMINGLAIHGLG 430
            Y+ K +  +N +   ++IDMY+KCG IE+A +VF E      V  WNAMI G A+HG+ 
Sbjct: 271 AYIGKGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMP 330

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
             A ++  +M+   I P+ +TF  LLNAC+H  +V+EG L F LM   + + PE++HYGC
Sbjct: 331 NEAINVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGC 390

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           MVD+L R+G ++ A ++I  MPM P+  IW  LL+ACR Y+++  G  + + + GMD ++
Sbjct: 391 MVDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKGMDPNH 450

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMK-ERNLKKLPGCSWIELEGVVHEFFVRDKSRLQ 609
              +VLLSN+++  G WN+AR +R   +  R+ KK+PGCS IEL+G  H+F V D+S  Q
Sbjct: 451 IGCHVLLSNIYSTSGRWNEARILREKNEISRDRKKIPGCSSIELKGTFHQFLVGDQSHPQ 510

Query: 610 VRDIYYMLDNMWT 622
            R+IY  LD M T
Sbjct: 511 SREIYSFLDEMTT 523



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 142/519 (27%), Positives = 251/519 (48%), Gaps = 70/519 (13%)

Query: 9   QPCNSTQSTLL--LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTE 66
           +P +S   + L  L+  CK++  + Q HA++ITT  I +     KL+     + C  L+ 
Sbjct: 9   KPFHSDHYSRLVSLIDSCKSMQQIKQTHAQLITTALISHPVSANKLL---KLAACASLS- 64

Query: 67  FARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKE---ALVMF-CLMLDNGVSVDKFSA 122
           +A  +F +      + D F++N +IK  +H L P     +L++F  L  D G+  +++S 
Sbjct: 65  YAHKLFDQI----PQPDLFIYNTMIK--AHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSF 118

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI 182
                AC     ++EG Q+     KV   +++F+ N LI +Y + G +  ++++F     
Sbjct: 119 VFAFSACGNGLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVD 178

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIF 242
           RD  S+N++I  YV SGN+  A+ELFD M  RER+++SW++++ GY Q+   ++ A   F
Sbjct: 179 RDLYSWNTLIAAYVGSGNMSLAKELFDGM--RERDVVSWSTIIAGYVQVGCFME-ALDFF 235

Query: 243 EKM----PERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS----WANMIDGYAKL 294
            KM    P+ +  +  S L  C     +D  + +   + K ++       A++ID YAK 
Sbjct: 236 HKMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKC 295

Query: 295 GRVDIARRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI 353
           G ++ A R+F E   K+ V   NAM+GG+  +G   +A+ +F+ M+ E  + P+  + + 
Sbjct: 296 GEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVE-KISPNKVTFIA 354

Query: 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
           +L+A +    +++G    R +  D               Y+    IE             
Sbjct: 355 LLNACSHGYMVEEGKLYFRLMVSD---------------YAITPEIE------------- 386

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE 473
             H+  M++ L+  GL + A D++  M    + PD   +  LLNAC    + K+    + 
Sbjct: 387 --HYGCMVDLLSRSGLLKEAEDMISSM---PMAPDVAIWGALLNACR---IYKDMERGYR 438

Query: 474 LMRRIHKLEPELQHYGCMV---DILGRAGHIEAARNLIE 509
           + R I  ++P   H GC V   +I   +G    AR L E
Sbjct: 439 IGRIIKGMDP--NHIGCHVLLSNIYSTSGRWNEARILRE 475


>gi|255548718|ref|XP_002515415.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545359|gb|EEF46864.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 507

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 176/524 (33%), Positives = 281/524 (53%), Gaps = 40/524 (7%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           WN II+   H  +  +A++ +  + + G   D ++  ++LKA  R+   + G  +HG   
Sbjct: 18  WNEIIRKQMHMGNGAQAILTYLKVQELGFHADNYTFPILLKAAGRICASKIGFALHGQTI 77

Query: 147 KVAFGSDLFLQNCLISLY--VRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESA 204
           K  F +  F+Q  L+++Y  + C                                 I  A
Sbjct: 78  KTGFCAHAFVQTALVNMYGNLHC---------------------------------IGDA 104

Query: 205 RELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCG 264
            ++F+ MP+++  LI+WNS+L+ YA   + + +A  +F  MP +D+ S+N M+ G    G
Sbjct: 105 FKVFEIMPVKD--LIAWNSMLDAYAS-NAQMDYASNLFNSMPLKDISSFNIMISGYSTRG 161

Query: 265 KMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVR 324
           +   A+++FD M  RD VSW +MI  Y + G ++    LF EMP ++ V  N M+ G ++
Sbjct: 162 EAMLARSIFDSMEVRDFVSWNSMISAYIRAGDMEKGLALFREMPVKNTVTWNTMITGCLQ 221

Query: 325 NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK 384
           + +    L++F+ M+   Y+ PD  ++  VLS    LG +  G+ IH Y   +    +  
Sbjct: 222 SEHFGMVLDLFEEMKTANYI-PDYLTVTSVLSTCGHLGSLGTGIKIHIYAIDNGLVSSPH 280

Query: 385 HGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS 444
              ALIDMYSKCGSIE  + VF + +   +  WNA+I+ LA+HG G  A  +  +M +  
Sbjct: 281 VTTALIDMYSKCGSIEQGLHVFCKSQVKDIYCWNALISALALHGHGYAALKVFGKMRKNH 340

Query: 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504
           I+PDDITF G++NAC+H+GLV+EG   F  M+    + P+L+HYGCMV++LGR+GH+  A
Sbjct: 341 IQPDDITFIGIINACSHSGLVQEGCQLFVSMQEDFGISPKLEHYGCMVNLLGRSGHLALA 400

Query: 505 RNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL-SNMFAG 563
             +IE MP EP + I   LLSAC  Y++L  GE V + +       S   +++ SN++A 
Sbjct: 401 LQVIETMPFEPGESILGALLSACIIYQDLETGERVIELVCSKAHYLSDGELMMFSNLYAS 460

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
            G W +A R R MM    + K  G S IE+ G   +F   +  +
Sbjct: 461 CGNWEEANRWREMMNSTGIVKTAGYSVIEVSGRFQKFLAGEVGK 504



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 10/179 (5%)

Query: 4   SANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTP 63
           +ANY     +  S L       +L    +IH   I  G + + H+TT L+  +S   C  
Sbjct: 237 TANYIPDYLTVTSVLSTCGHLGSLGTGIKIHIYAIDNGLVSSPHVTTALIDMYSK--CGS 294

Query: 64  LTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSAS 123
           + E   ++F K     + KD + WNA+I   +       AL +F  M  N +  D  +  
Sbjct: 295 I-EQGLHVFCK----SQVKDIYCWNALISALALHGHGYAALKVFGKMRKNHIQPDDITFI 349

Query: 124 LVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQN--CLISLYVRCGYLEFARQLFDKM 180
            ++ ACS  GL++EG Q+   +++  FG    L++  C+++L  R G+L  A Q+ + M
Sbjct: 350 GIINACSHSGLVQEGCQLFVSMQE-DFGISPKLEHYGCMVNLLGRSGHLALALQVIETM 407


>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
 gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 204/683 (29%), Positives = 331/683 (48%), Gaps = 92/683 (13%)

Query: 18  LLLLRKC----KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSP--CTPLTEFARYI 71
           L LLR+C    K+L  +  +H R++T G  ++  L   L+  + +    C+     AR++
Sbjct: 7   LSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCS-----ARHV 61

Query: 72  FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV-DKFSASLVLKACS 130
           F     F  + D ++WN+++  YS      + L +F  +L+  + V D F+   V+KA  
Sbjct: 62  F---ENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYG 118

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
            LG    G  IH L+ K  +  D+ + + L+ +Y +    E + Q+FD+M  RD  S+N+
Sbjct: 119 ALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNT 178

Query: 191 MIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQL--------------KSG 234
           +I  + +SG  E A ELF  M     E N +S    ++  ++L              K G
Sbjct: 179 VISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKG 238

Query: 235 --------------------LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFD 274
                               L+ A ++F+KMP + L++WNSM+ G V  G       + +
Sbjct: 239 FELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILN 298

Query: 275 KM------PKR---------------------------------DVVSWANMIDGYAKLG 295
           +M      P +                                 D+    ++ID Y K G
Sbjct: 299 RMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCG 358

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
             ++A  +F +  K    + N M+  Y+  G   KA+E++D M   + + PD  +   VL
Sbjct: 359 EANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQM-VSVGVKPDVVTFTSVL 417

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
            A +QL  ++KG  IH  + + +   +     AL+DMYSKCG+ + A ++F  I    V 
Sbjct: 418 PACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVV 477

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            W  MI+    HG    A     EM++  ++PD +T   +L+AC HAGL+ EGL  F  M
Sbjct: 478 SWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQM 537

Query: 476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP-MEPNDVIWRTLLSACRNYENLN 534
           R  + +EP ++HY CM+DILGRAG +  A  +I+  P    N  +  TL SAC  +   +
Sbjct: 538 RSKYGIEPIIEHYSCMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHS 597

Query: 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           +G+ +A+ L+     ++S+Y++L N++A    W+ ARRVR  MKE  L+K PGCSWIE+ 
Sbjct: 598 LGDRIARLLVENYPDDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMS 657

Query: 595 GVVHEFFVRDKSRLQVRDIYYML 617
             V  FF  D+S L+  ++Y  L
Sbjct: 658 DKVCHFFAEDRSHLRAENVYECL 680


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 152/348 (43%), Positives = 226/348 (64%), Gaps = 3/348 (0%)

Query: 276 MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
           MP++ +VS   MI  YAK G +D AR LFD + +RD +  N M+ GY ++G   + L +F
Sbjct: 1   MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
             M     + P++ +++ VLSA  Q G ++ G  +H Y+E +   +N + G +LIDMYSK
Sbjct: 61  RQM-LNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSK 119

Query: 396 CGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGL 455
           CGS+E+A  VFE+I +  V  WN+M+ G A+HG  + A  L  EM  +  +P DITF G+
Sbjct: 120 CGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGV 179

Query: 456 LNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEP 515
           LNAC+HAGLV EG   F  M+  + +EP+++HYGCMV++LGRAG++E A  L+++M ++ 
Sbjct: 180 LNACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQ 239

Query: 516 NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRS 575
           + V+W TLL ACR + N+ +GE +A++L+  + +NS +YVLLSN++A  G W    RVR+
Sbjct: 240 DPVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRT 299

Query: 576 MMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD--NMW 621
           +MKE   +K PGCS IE+   VHEF   D    + R+IY ML+  N W
Sbjct: 300 LMKESGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGW 347



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 135/266 (50%), Gaps = 17/266 (6%)

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQIF 242
           VS  +MI  Y K G I+ AR LFD +   ER+ I WN +++GYAQ      GL    Q+ 
Sbjct: 7   VSLTAMITCYAKYGMIDEARVLFDGL--EERDAICWNVMIDGYAQHGLPNEGLLLFRQML 64

Query: 243 EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVD 298
                 + ++  ++L  C + G ++  + +   +       +V    ++ID Y+K G ++
Sbjct: 65  NAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLE 124

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
            AR +F+ +  +DVVA N+M+ GY  +G+S  AL +F  M C +   P D + + VL+A 
Sbjct: 125 DARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEM-CMIGYQPTDITFIGVLNAC 183

Query: 359 AQLGHIDKGVAIHRYLEKDQFSLNGK--HGVALIDMYSKCGSIENAIKVFEQIE-DGSVD 415
           +  G + +G     Y  KD++ +  K  H   ++++  + G +E A ++ + +E D    
Sbjct: 184 SHAGLVSEGWKFF-YSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPV 242

Query: 416 HWNAMINGLAIHG---LGELAFDLLM 438
            W  ++    +HG   LGE   + L+
Sbjct: 243 LWGTLLGACRLHGNIALGEQIAEYLV 268



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 17/254 (6%)

Query: 80  EKKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
           E++D   WN +I  Y+ HGL P E L++F  ML+  V  ++ +   VL AC + G +E G
Sbjct: 33  EERDAICWNVMIDGYAQHGL-PNEGLLLFRQMLNAKVRPNEVTVLAVLSACGQTGALETG 91

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
             +H  +     G ++ +   LI +Y +CG LE AR +F+++  +D V++NSM+ GY   
Sbjct: 92  RWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNSMVVGYAMH 151

Query: 199 GNIESARELFDSMPI--RERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLISWNS 255
           G  + A  LF  M +   +   I++  VLN  +   +GL    W+ F  M +   I    
Sbjct: 152 GFSQDALRLFKEMCMIGYQPTDITFIGVLNACSH--AGLVSEGWKFFYSMKDEYGIEPKV 209

Query: 256 MLHGCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
             +GC+     + G +++A  L   M   +D V W  ++      G + +  ++ + +  
Sbjct: 210 EHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHGNIALGEQIAEYLVS 269

Query: 310 RDVVACNAMMGGYV 323
           +++    A  G YV
Sbjct: 270 QNL----ANSGTYV 279


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 186/594 (31%), Positives = 311/594 (52%), Gaps = 55/594 (9%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFI-KNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAF 78
           L+R         Q+HA  +  G +  N   +  LV ++          F R +   Y  F
Sbjct: 75  LVRAAPGPASAAQLHACALRLGLLHPNVFASGSLVHAY--------LRFGR-VAEAYRVF 125

Query: 79  RE--KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
            E  ++D   WNA++          +A+ +   M+  GV+ D  + S VL  C  LG   
Sbjct: 126 DEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRA 185

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
             L +H    K     +LF+          C                     N++ID Y 
Sbjct: 186 LALVMHVYAVKHGLSGELFV----------C---------------------NALIDVYG 214

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER----DLIS 252
           K G +  A  +F  M +R+  L++WNS+++   Q    +  A ++F  M E     D+++
Sbjct: 215 KLGMLTEAHWVFGGMALRD--LVTWNSIISANEQ-GGKVAAAVELFHGMMESGVCPDVLT 271

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKR-----DVVSWANMIDGYAKLGRVDIARRLFDEM 307
             S+     +CG    A+++   + +R     D+++   M+D YAK+ ++D A+++FD +
Sbjct: 272 LVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNL 331

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
           P RDVV+ N ++ GY++NG + +A+ I+++M     L P   + V VL A + LG + +G
Sbjct: 332 PDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQG 391

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427
           + +H    K   +L+      LID+Y+KCG +  A+ +FE +   S   WNA+I GL +H
Sbjct: 392 MRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVH 451

Query: 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487
           G G  A  L  +M++  I+PD +TF  LL AC+HAGLV +G   F+LM+ ++ + P  +H
Sbjct: 452 GHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKH 511

Query: 488 YGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547
           Y CMVD+LGRAG ++ A   I+ MP++P+  +W  LL ACR + N+ +G+  +++L  +D
Sbjct: 512 YTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELD 571

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
             N   YVL+SNM+A +G W+    VRS+++ +NL+K PG S +E++G V  F+
Sbjct: 572 PENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFY 625


>gi|224103137|ref|XP_002312939.1| predicted protein [Populus trichocarpa]
 gi|222849347|gb|EEE86894.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 188/534 (35%), Positives = 296/534 (55%), Gaps = 37/534 (6%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   WN +I  Y+      EAL MF LM +     D  S + ++    + G +   ++
Sbjct: 90  ERDIVSWNTMISGYAKNGRMDEALRMFKLMPEG----DVVSWNAIVTGFLQNGDVARAIE 145

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQL---FDKMGIRDS---VSYNSMIDG 194
               + +     D    + L+S  +R G L+ A ++   F++ G R      +YN++I G
Sbjct: 146 YFERMPE----RDAASLSALVSGLIRNGELDEAARVVVRFERDGGRKENLLQAYNTLIAG 201

Query: 195 YVKSGNIESARELFDSMPI-----------RERNLISWNSVLNGYAQLKSG-LQFAWQIF 242
           Y +   ++ AR+LFD +P              RN++SWN+++  Y  +K+G + FA ++F
Sbjct: 202 YGRRDRVDEARKLFDQIPFCDGKGKGGDGRFGRNVVSWNTMIMCY--VKAGNIVFARELF 259

Query: 243 EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
           ++M ERD ISWN+M+ G V    MD+A  LF +MP  D+ SW  MI G+A++G +D    
Sbjct: 260 DQMMERDTISWNTMISGYVNMLDMDEASRLFCEMPNPDIFSWNKMIAGHAQIGDLDRVND 319

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           LF  MP++++V+ N+++ GY +N   + A++IF  MQ E    PD  +L  VLS  A + 
Sbjct: 320 LFGRMPQKNLVSWNSVITGYEKNDDYIGAIKIFIQMQVEGE-KPDRHTLSSVLSVSAGIV 378

Query: 363 HIDKGVAIHRYLEKD---QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWN 418
            +  G+ IH+ + K       +N     ALI MYS+CG+I  A  +F++++    V  WN
Sbjct: 379 DLQLGMQIHQLVTKTVIPDVPINN----ALITMYSRCGAIIEAGTIFDEVKLQKEVISWN 434

Query: 419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRI 478
           AMI G A HG    A ++   M+   + P  ITF  +L+ACAHAGLV+EG   FE M   
Sbjct: 435 AMIGGYASHGYAVEALEVFKLMKSFDVRPTHITFISVLHACAHAGLVEEGREIFESMADE 494

Query: 479 HKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEP 538
             +EP ++HY  +VDI+ R G +E A +LI  MP EP+  +W  LLSA + +  + V   
Sbjct: 495 FGIEPSVEHYASLVDIMSRHGQLEQALDLINSMPFEPDKAVWGALLSAAKVHNKIEVARV 554

Query: 539 VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
            A+ LI ++  +S+ YVLL NM+A +G W+ A  VR MM+  N+KK    SW++
Sbjct: 555 AAEALIRLEPDSSAPYVLLYNMYADVGQWDSAAEVRIMMERSNIKKQAAYSWVD 608



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 183/357 (51%), Gaps = 38/357 (10%)

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER 248
           N  I    K+G I+ AR LFD M   E N +SWN+++  Y + +  +  A ++F++MP+R
Sbjct: 1   NKKISNLAKNGRIDEARALFDQM--EETNTVSWNAIIRAYVKRRE-IAKARKLFDEMPQR 57

Query: 249 DLISWNSMLHGCVKCGK---MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFD 305
           D++SWN M+ G V C     + + + LFD+MP+RD+VSW  MI GYAK GR+D A R+F 
Sbjct: 58  DIVSWNLMISGYVSCHGIRFLKEGRNLFDRMPERDIVSWNTMISGYAKNGRMDEALRMFK 117

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
            MP+ DVV+ NA++ G+++NG   +A+E F+ M        D ASL  ++S + + G +D
Sbjct: 118 LMPEGDVVSWNAIVTGFLQNGDVARAIEYFERMP-----ERDAASLSALVSGLIRNGELD 172

Query: 366 KGVAIHRYLEKD---QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE------------ 410
           +   +    E+D   + +L   +   LI  Y +   ++ A K+F+QI             
Sbjct: 173 EAARVVVRFERDGGRKENLLQAYNT-LIAGYGRRDRVDEARKLFDQIPFCDGKGKGGDGR 231

Query: 411 -DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
              +V  WN MI      G    A +L  +M    +E D I++  +++   +   + E  
Sbjct: 232 FGRNVVSWNTMIMCYVKAGNIVFARELFDQM----MERDTISWNTMISGYVNMLDMDEAS 287

Query: 470 LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
             F  M       P++  +  M+    + G ++   +L   MP + N V W ++++ 
Sbjct: 288 RLFCEMP-----NPDIFSWNKMIAGHAQIGDLDRVNDLFGRMP-QKNLVSWNSVITG 338



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/285 (32%), Positives = 152/285 (53%), Gaps = 28/285 (9%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN 217
           N  IS   + G ++ AR LFD+M   ++VS+N++I  YVK   I  AR+LFD MP  +R+
Sbjct: 1   NKKISNLAKNGRIDEARALFDQMEETNTVSWNAIIRAYVKRREIAKARKLFDEMP--QRD 58

Query: 218 LISWNSVLNGYAQLKSGLQF---AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFD 274
           ++SWN +++GY     G++F      +F++MPERD++SWN+M+ G  K G+MD+A  +F 
Sbjct: 59  IVSWNLMISGYVSCH-GIRFLKEGRNLFDRMPERDIVSWNTMISGYAKNGRMDEALRMFK 117

Query: 275 KMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEI 334
            MP+ DVVSW  ++ G+ + G V  A   F+ MP+RD  + +A++ G +RNG      E+
Sbjct: 118 LMPEGDVVSWNAIVTGFLQNGDVARAIEYFERMPERDAASLSALVSGLIRNG------EL 171

Query: 335 FDNMQCELYLHPDDASLVIVLSA----IAQLGHIDKGVAIHRYLEKDQF----------- 379
            +  +  +    D      +L A    IA  G  D+     +  ++  F           
Sbjct: 172 DEAARVVVRFERDGGRKENLLQAYNTLIAGYGRRDRVDEARKLFDQIPFCDGKGKGGDGR 231

Query: 380 -SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
              N      +I  Y K G+I  A ++F+Q+ +     WN MI+G
Sbjct: 232 FGRNVVSWNTMIMCYVKAGNIVFARELFDQMMERDTISWNTMISG 276


>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 195/618 (31%), Positives = 309/618 (50%), Gaps = 29/618 (4%)

Query: 20  LLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           LL  C   K+L +  Q+H  +I+ GF ++  L  KLV  +S          A  +    H
Sbjct: 106 LLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYS----------AFNLLVDAH 155

Query: 77  AFREKKD---PFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLG 133
              E  +   PF WN +I +Y      ++AL  +  M+  G+  D F+   VLKAC    
Sbjct: 156 VITENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEEL 215

Query: 134 LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMID 193
            +  G ++H  +        L + N LIS+Y +CG +  AR LFDK+  RD+VS+NSMI 
Sbjct: 216 DLGFGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMIS 275

Query: 194 GYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGY---AQLKSGLQFAWQIFEKMPER 248
            Y   G    A ELF SM     E N+I WN++  GY      K  L+   Q+ +     
Sbjct: 276 VYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHL 335

Query: 249 DLISWNSMLHGC-----VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRL 303
           D ++    L  C      K GK   + A+     + D V  A +I  Y++   +  A  L
Sbjct: 336 DSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNA-LITMYSRCKDLKHAYLL 394

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           F  M  + ++  N+++ G      S +A  +   M     + P+  ++  VL   A++ +
Sbjct: 395 FQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLL-FGIEPNYVTIASVLPLCARVAN 453

Query: 364 IDKGVAIHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
           +  G   H Y+  ++ F  +     AL+DMY++ G +  A +VF+ + +     + +MI 
Sbjct: 454 LQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIA 513

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
           G  + G G+ A  L  EM    I+PD IT   +L+AC+H+GLV +G L FE MR ++ L 
Sbjct: 514 GYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLT 573

Query: 483 PELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKH 542
           P L+H+ CM D+ GRAG +  A+ +I +MP +P   +W TL+ ACR + N  +GE  A+ 
Sbjct: 574 PHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEK 633

Query: 543 LIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV 602
           L+ M   N   YVL++NM+A  G WN   +VR  M++  ++K PGC+W+++      F V
Sbjct: 634 LLEMKPENPGYYVLIANMYAAAGCWNKLAKVRIFMRDLGVRKAPGCAWVDVGTGFSPFLV 693

Query: 603 RDKSRLQVRDIYYMLDNM 620
            D S     +IY +L+ +
Sbjct: 694 DDTSNANADEIYPLLEGL 711



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 121/416 (29%), Positives = 200/416 (48%), Gaps = 17/416 (4%)

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI 182
           S +L +C+ +  + EG Q+HG +  + F     L   L++ Y     L  A  + +   I
Sbjct: 104 SSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNI 163

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSM---PIRERNLISWNSVLNGYAQLKSGLQFAW 239
                +N +I  YV++G  + A   +  M    IR  N  ++ SVL    + +  L F  
Sbjct: 164 LHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNF-TYPSVLKACGE-ELDLGFGK 221

Query: 240 QIFEKMPERDLISWNSMLHGCV-----KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKL 294
           ++ E +     I W+ ++H  +     KCGK+  A+ LFDK+P+RD VSW +MI  YA +
Sbjct: 222 EVHESI-NASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASM 280

Query: 295 GRVDIARRLFDEMPKRD----VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
           G  + A  LF  M   D    ++  N + GGY+R G    ALE+   M+ +   H D  +
Sbjct: 281 GMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMR-KCGSHLDSVA 339

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE 410
           L+I L A + +G    G  IH +  +  F        ALI MYS+C  +++A  +F+ +E
Sbjct: 340 LIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLME 399

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470
             S+  WN++I+G       E A  LL EM    IEP+ +T   +L  CA    ++ G  
Sbjct: 400 AKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKE 459

Query: 471 CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
               M R    +  L  +  +VD+  R+G +  AR +  DM  E + + + ++++ 
Sbjct: 460 FHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVF-DMLGERDKMTYTSMIAG 514


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 176/515 (34%), Positives = 292/515 (56%), Gaps = 21/515 (4%)

Query: 116 SVDKFSA---------SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVR 166
           + D+FS+         S +L++C     +  G Q+H L+      SD F+ N L++LY +
Sbjct: 40  AFDRFSSHIWSEPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSK 99

Query: 167 CGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLN 226
           CG L+ A  LF  M  ++ +S N +I+GY +SG+  +AR++FD MP  ERN+ +WN+++ 
Sbjct: 100 CGQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMP--ERNVATWNAMVA 157

Query: 227 GYAQLKSGLQFAWQIFEKMPE----RDLISWNSMLHGCVKCGKMDDAQALFDKMPK---- 278
           G  Q +   +    +F +M E     D  +  S+L GC     +   + +   + K    
Sbjct: 158 GLIQFEFNEE-GLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFE 216

Query: 279 RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM 338
            ++V  +++   Y K G +    RL   MP ++VVA N ++ G  +NGY  + L+ ++ M
Sbjct: 217 FNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMM 276

Query: 339 QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS 398
           +   +  PD  + V V+S+ ++L  + +G  IH  + K   SL      +LI MYS+CG 
Sbjct: 277 KMAGF-RPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGC 335

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
           +E ++KVF + E+G V  W++MI     HG G  A DL  +ME+  +E +D+TF  LL A
Sbjct: 336 LEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYA 395

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
           C+H GL ++G+  F+LM   + ++P L+HY CMVD+LGR G +E A  LI  MP++ + +
Sbjct: 396 CSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVI 455

Query: 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578
            W+TLLSAC+ ++   +   +++ +  +D  +   YVLLSN+ A    W+D   VR  M+
Sbjct: 456 TWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMR 515

Query: 579 ERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
           +R LKK PG SW+E++  +H+F + DKS  +  +I
Sbjct: 516 DRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEI 550



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 169/370 (45%), Gaps = 41/370 (11%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           WNA++         +E L +F  M + G   D+F+   VL+ C+ L  +  G Q+HG +R
Sbjct: 152 WNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVR 211

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           K  F  +L + + L  +Y++CG L    +L   M  ++ V++N++I G  ++G  E   +
Sbjct: 212 KCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLD 271

Query: 207 LFDSMPIR--ERNLISWNSVLNGYAQLKS---GLQFAWQIFEKMPERDLISWNSMLHGCV 261
            ++ M +     + I++ SV++  ++L +   G Q   ++ +      +   +S++    
Sbjct: 272 QYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYS 331

Query: 262 KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGG 321
           +CG ++ +  +F +    DVV W++MI  Y   GR                         
Sbjct: 332 RCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGR------------------------- 366

Query: 322 YVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL-EKDQFS 380
                  ++A+++F+ M+ E  L  +D + + +L A +  G  +KG+     + EK    
Sbjct: 367 ------GVEAIDLFNQMEQE-KLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVK 419

Query: 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHGLGELAFDLLME 439
              +H   ++D+  + GS+E A  +   +     V  W  +++   IH   E+A  +  E
Sbjct: 420 PRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEE 479

Query: 440 MERLSIEPDD 449
           + RL  +P D
Sbjct: 480 VFRL--DPRD 487



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 142/304 (46%), Gaps = 21/304 (6%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +LR C  L  +    Q+H  +   GF  N  + + L   +    C  L E  R I     
Sbjct: 190 VLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMK--CGSLGEGERLI----- 242

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
                ++   WN +I   +    P+E L  + +M   G   DK +   V+ +CS L  + 
Sbjct: 243 RAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLG 302

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           +G QIH  + K      + + + LIS+Y RCG LE++ ++F +    D V ++SMI  Y 
Sbjct: 303 QGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYG 362

Query: 197 KSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPER----- 248
             G    A +LF+ M     E N +++ S+L  YA    GL +   + F+ M E+     
Sbjct: 363 FHGRGVEAIDLFNQMEQEKLEANDVTFLSLL--YACSHCGLKEKGIKFFDLMVEKYGVKP 420

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
            L  +  M+    + G +++A+AL   MP K DV++W  ++       + ++ARR+ +E+
Sbjct: 421 RLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEV 480

Query: 308 PKRD 311
            + D
Sbjct: 481 FRLD 484


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 194/605 (32%), Positives = 297/605 (49%), Gaps = 48/605 (7%)

Query: 23  KCKTLNDVNQIHARMITT---GFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           K K+L    QIH++++TT     + N +    L A   S   T L      +F  Y    
Sbjct: 109 KLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLL------LFNTYP--H 160

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
              +   W  +I   S    P +AL  F  M   G+  + F+ S +L AC+   L+ EG 
Sbjct: 161 PSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQ 220

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           QIH L+ K  F +D F+   L+ +Y +CG +  A  +FD+M  R+ VS+NSMI G+VK+ 
Sbjct: 221 QIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNK 280

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISW----NS 255
               A  +F  +     + +S +SVL+  A L   L F  Q+   + +R L+      NS
Sbjct: 281 LYGRAIGVFREVLSLGPDQVSISSVLSACAGLVE-LDFGKQVHGSIVKRGLVGLVYVKNS 339

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           ++    KCG  +DA  LF     RDVV+W  MI G  +    + A   F  M        
Sbjct: 340 LVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAM-------- 391

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
                  +R G                 + PD+AS   +  A A +  + +G  IH ++ 
Sbjct: 392 -------IREG-----------------VEPDEASYSSLFHASASIAALTQGTMIHSHVL 427

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           K     N +   +L+ MY KCGS+ +A +VF + ++ +V  W AMI     HG    A  
Sbjct: 428 KTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIK 487

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           L  EM    + P+ ITF  +L+AC+H G + +G   F  M  +H ++P L+HY CMVD+L
Sbjct: 488 LFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLL 547

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           GR G +E A   IE MP EP+ ++W  LL AC  + N+ +G  VA+ L  ++  N  +Y+
Sbjct: 548 GRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYM 607

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY 615
           LLSN++   GM  +A  VR +M    ++K  GCSWI+++     F   D+S  + ++IY 
Sbjct: 608 LLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRTQEIYG 667

Query: 616 MLDNM 620
           ML  +
Sbjct: 668 MLQKL 672


>gi|242059647|ref|XP_002458969.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
 gi|241930944|gb|EES04089.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
          Length = 530

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 164/476 (34%), Positives = 258/476 (54%), Gaps = 36/476 (7%)

Query: 118 DKFSASLVLKACSRLGLIEEGLQIHGL-LRKVAFGSDLFLQNCLISLYVRCGYLEFARQL 176
           D F+    L A + L L+  G  +H +  R       L + N L+ LY +C     A   
Sbjct: 81  DHFTLPFALNAAASLRLLPLGASLHAVAFRLGLLPLRLPVANALVDLYAKCEEFSAAHAA 140

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQ 236
              +   D+VS+NS++  + ++ ++  A  L                             
Sbjct: 141 LADIPAPDAVSFNSLLCAHARNASVRPAESL----------------------------- 171

Query: 237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGR 296
                F  M  R  +SWN+M+   V  G +  A+ +FD+MP RD  SW+ +I GY K G 
Sbjct: 172 -----FAAMRSRTQVSWNAMVVLYVSAGDLVSARRVFDEMPTRDTASWSVLIAGYCKGGL 226

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
           V  AR LFD+MP +++VA  AM+ GY + G    AL +F +++    + PD A++V V+S
Sbjct: 227 VQNARELFDKMPSKNLVARTAMINGYAQTGQPKAALALFRDLEAA-GIEPDGATMVGVIS 285

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
           A++Q+G  +    +  Y+++ +   N K   AL+DM++KCG+IE A+  F +I       
Sbjct: 286 AVSQIGSTELAGWVGAYVDRKKIERNVKVLTALVDMHAKCGNIEQALSAFREIPQPDAYP 345

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           + A+I+GLA HG  +LA  +   M+  +++PD ITF G+L AC+H GLV +GL  +E M 
Sbjct: 346 YTALISGLATHGHEKLALSVFERMQVQAVKPDPITFVGVLTACSHTGLVDKGLEYWEAMV 405

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
           R + +     HY C++D+LGRAG IE A  +++ MPM P+      LLSAC+ YEN+ + 
Sbjct: 406 RDYGIVRRADHYACVIDMLGRAGRIEEAFEMVQTMPMGPHPGALGALLSACKTYENVEIA 465

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           E VA  L  ++  N+ +Y+LLSN++AG  +W +A RVRS+M+ +   K PG +W E
Sbjct: 466 EIVANKLFELEPWNTGNYILLSNIYAGKELWEEAERVRSLMRTKLPFKNPGSTWFE 521


>gi|357150569|ref|XP_003575504.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 548

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 190/605 (31%), Positives = 301/605 (49%), Gaps = 77/605 (12%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           L ++  +     Q+HA+++  G          L+AS SSSP     ++AR IF    A  
Sbjct: 14  LAQRALSPAAARQLHAQLLLRGLPLPARAAVTLIAS-SSSP-----QYARAIFDSVPA-- 65

Query: 80  EKKDPFLWNAIIKTYSHGLDPK---EALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
              + +LW A + +Y+    P    EA  +F  ML +G   + F+ S VLK+ S+L    
Sbjct: 66  ASANVYLWTATVSSYAKHASPALAAEAFPLFMFMLRSGPRPNGFTVSSVLKSLSKLRAAH 125

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           +  Q+HG L K    S         SL+V                        +++D Y 
Sbjct: 126 QVCQVHGFLVKAGLAS---------SLHVGA----------------------TLLDSYG 154

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
               ++ AR +FD                                  +MP  +++  N+M
Sbjct: 155 NLCRVKDARRVFD----------------------------------EMPRSNVVVGNAM 180

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
           + G VK G ++ A+ +FD M +RD +SW  ++ GY + G   +AR LFDEMP+R+V + N
Sbjct: 181 VSGYVKAGDVEAARQVFDGMVERDSISWNTLMSGYLRRGDAGLARDLFDEMPQRNVNSWN 240

Query: 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
            M+      G    ++ +F+ M+  +   PD A++ +++SA AQLG +     ++  L K
Sbjct: 241 MMISACSEVGLWADSVAVFNQMRF-MSFRPDAATMAVLMSACAQLGFLSVARQVYGLLRK 299

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
               +N     +L+DM++KCG    A  +F +++   V  +N M++ LA HG G+ A  L
Sbjct: 300 GCVEMNCHVHNSLVDMFAKCGCFSEAHLLFAEMDPKDVVSYNVMVSALAHHGHGKDALKL 359

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496
             +M    ++PD +TF G+L+ACAHAGLV  G   FE M   + +E    HY CMVD+ G
Sbjct: 360 FEQMIEGGLQPDAVTFLGVLSACAHAGLVDSGKYYFETMGTTYAIEKSADHYACMVDLYG 419

Query: 497 RAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556
           R G IE A   ++ MP++P+  IW  LL+ACR + N++VGE  A+ LI ++  N  +YVL
Sbjct: 420 RVGLIEEAHYFVKIMPVKPHAGIWGALLNACRKHCNIDVGEVAARELIRIEPMNPGNYVL 479

Query: 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYM 616
           LSN  A    W+    VR +M+   + K  G SW+E+E VVHEF + D S     +I  +
Sbjct: 480 LSNTLAWSQQWDAVGDVRQLMRGNGIDKNTGFSWVEVESVVHEFLMGDFSHPSFDEICGI 539

Query: 617 LDNMW 621
           L+ ++
Sbjct: 540 LELLY 544


>gi|297817672|ref|XP_002876719.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322557|gb|EFH52978.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1005

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 194/629 (30%), Positives = 319/629 (50%), Gaps = 50/629 (7%)

Query: 1   MFVSANYNQPCNSTQSTLLLLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFS 57
           +F       P +++ + +  L  C+  +      +IHA ++ +      ++   L+A ++
Sbjct: 251 LFREMQMTGPASNSYTIVSALTACEGFSYAKLGKEIHAAVLKSTHSFEVYVCNALIAMYA 310

Query: 58  SSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV 117
              C  + E  R +    +A     D   WN++IK Y   L  KEAL  FC M+  G   
Sbjct: 311 R--CGKMLEAGRILRLMNNA-----DVVTWNSLIKGYVQNLMYKEALQFFCDMIAAGHKP 363

Query: 118 DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLF 177
           D+ S + V+ A  RL  +  G+++H  + K  + S+L + N LI +Y +C    +  + F
Sbjct: 364 DEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNTLIDMYSKCNLTCYMGRAF 423

Query: 178 DKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK---SG 234
                                            + + E++LISW +++ GYA        
Sbjct: 424 ---------------------------------LMMHEKDLISWTTIIAGYALNDCHVEA 450

Query: 235 LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR---DVVSWANMIDGY 291
           LQ    + +K  E D +   S+L  C     M   + +   + ++   D V    ++D Y
Sbjct: 451 LQLFRDVAKKRMEIDEMMLGSILRACSVLKSMLIVKEIHCHILRKGLIDTVIQNELVDVY 510

Query: 292 AKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASL 351
            K   +  A R+F+ +  +DVV+  +M+     NG   +A+E+F  M  E  L  D  +L
Sbjct: 511 GKCRNMGYASRVFESIKGKDVVSWTSMISSSALNGNENEAVELFRRMA-ETGLLADSVAL 569

Query: 352 VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED 411
           + +LSA A L  + KG  IH YL +  F L G   VA++DMY+ CG +++A  VF++IE 
Sbjct: 570 LCILSAAASLSALKKGREIHGYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIER 629

Query: 412 GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC 471
             +  + +MIN   +HG G+ + +L  +M   ++ PD I+F  LL AC+HAGL+ EG   
Sbjct: 630 KGLLQYTSMINAYGMHGCGKASVELFNKMRHENVSPDHISFLALLYACSHAGLLDEGRRF 689

Query: 472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYE 531
            ++M   +KLEP  +HY C+VD+LGRA  +  A   ++ M  EP   +W  LL+ACR++ 
Sbjct: 690 LKIMELEYKLEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTTEVWCALLAACRSHS 749

Query: 532 NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
              +GE  A+ L+ ++  N  + VL+SN+FA  G WND  +VR+ MK   ++K PGCSWI
Sbjct: 750 EKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWI 809

Query: 592 ELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           E++G VH+F  RDKS  + ++IY  L  +
Sbjct: 810 EMDGKVHKFTARDKSHPETKEIYEKLSEV 838



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 124/464 (26%), Positives = 220/464 (47%), Gaps = 57/464 (12%)

Query: 78  FREKKD--PFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
           F E +D   F WNA+I  Y    +P  AL ++  M   GV +D +S  ++LKAC +L  I
Sbjct: 119 FDEMRDRTAFAWNALIGAYVSNGEPASALFIYRNMRVEGVPLDLYSFPVLLKACGKLRDI 178

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
             G ++H +L K+ F S  F+ N L+S+Y                               
Sbjct: 179 RSGTELHCMLVKLGFNSTGFIVNALVSMYA------------------------------ 208

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM----PERDLI 251
            K+ ++ +A+ LFD+    + + + WNS+L+ Y+     L+   Q+F +M    P  +  
Sbjct: 209 -KTDHLSAAKRLFDASQ-EKGDAVLWNSILSSYSTSGKSLE-TLQLFREMQMTGPASNSY 265

Query: 252 SWNSMLHGC-----VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
           +  S L  C      K GK   A A+       +V     +I  YA+ G++  A R+   
Sbjct: 266 TIVSALTACEGFSYAKLGKEIHA-AVLKSTHSFEVYVCNALIAMYARCGKMLEAGRILRL 324

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           M   DVV  N+++ GYV+N    +AL+ F +M    +  PD+ SL  V++A  +L ++  
Sbjct: 325 MNNADVVTWNSLIKGYVQNLMYKEALQFFCDMIAAGH-KPDEVSLTSVIAASGRLSNLLA 383

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G+ +H Y+ K  +  N   G  LIDMYSKC       + F  + +  +  W  +I G A+
Sbjct: 384 GMELHAYVIKHGWDSNLLVGNTLIDMYSKCNLTCYMGRAFLMMHEKDLISWTTIIAGYAL 443

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK---LEP 483
           +     A  L  ++ +  +E D++    +L AC+   ++K  L+  E+   I +   ++ 
Sbjct: 444 NDCHVEALQLFRDVAKKRMEIDEMMLGSILRACS---VLKSMLIVKEIHCHILRKGLIDT 500

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WRTLLSA 526
            +Q+   +VD+ G+  ++  A  + E   ++  DV+ W +++S+
Sbjct: 501 VIQNE--LVDVYGKCRNMGYASRVFES--IKGKDVVSWTSMISS 540



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 106/442 (23%), Positives = 196/442 (44%), Gaps = 47/442 (10%)

Query: 19  LLLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           +LL+ C  L D+    ++H  ++  GF     +   LV+ ++    T     A+ +F   
Sbjct: 167 VLLKACGKLRDIRSGTELHCMLVKLGFNSTGFIVNALVSMYAK---TDHLSAAKRLF--- 220

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
            A +EK D  LWN+I+ +YS      E L +F  M   G + + ++    L AC      
Sbjct: 221 DASQEKGDAVLWNSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYA 280

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
           + G +IH  + K     ++++ N LI++Y RCG +  A ++   M   D V++NS+I GY
Sbjct: 281 KLGKEIHAAVLKSTHSFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGY 340

Query: 196 VKSGNIESARELFDSMPI--RERNLISWNSVLNGYAQLK---SGLQFAWQIFEKMPERDL 250
           V++   + A + F  M     + + +S  SV+    +L    +G++    + +   + +L
Sbjct: 341 VQNLMYKEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNL 400

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
           +  N+++    KC         F  M ++D++SW  +I GYA       A +LF ++ K+
Sbjct: 401 LVGNTLIDMYSKCNLTCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKK 460

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
            +     M+G  +R    +K++ I   + C                      HI +   I
Sbjct: 461 RMEIDEMMLGSILRACSVLKSMLIVKEIHC----------------------HILRKGLI 498

Query: 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
              ++ +           L+D+Y KC ++  A +VFE I+   V  W +MI+  A++G  
Sbjct: 499 DTVIQNE-----------LVDVYGKCRNMGYASRVFESIKGKDVVSWTSMISSSALNGNE 547

Query: 431 ELAFDLLMEMERLSIEPDDITF 452
             A +L   M    +  D +  
Sbjct: 548 NEAVELFRRMAETGLLADSVAL 569



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 114/267 (42%), Gaps = 22/267 (8%)

Query: 271 ALFDKMPKRDVVSWANMIDGYAKL------GRVDIARRLFDEMPKRDVVACNAMMGGYVR 324
            L +   + DV    + I+ YA L       R     ++FDEM  R   A NA++G YV 
Sbjct: 80  GLNEAFQRLDVNGNNSPIEAYAYLLELCGKSRALSQEKVFDEMRDRTAFAWNALIGAYVS 139

Query: 325 NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK 384
           NG    AL I+ NM+ E  +  D  S  ++L A  +L  I  G  +H  L K  F+  G 
Sbjct: 140 NGEPASALFIYRNMRVE-GVPLDLYSFPVLLKACGKLRDIRSGTELHCMLVKLGFNSTGF 198

Query: 385 HGVALIDMYSKCGSIENAIKVFE-QIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
              AL+ MY+K   +  A ++F+   E G    WN++++  +  G       L  EM+  
Sbjct: 199 IVNALVSMYAKTDHLSAAKRLFDASQEKGDAVLWNSILSSYSTSGKSLETLQLFREMQMT 258

Query: 444 SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH----KLEPELQHYGC--MVDILGR 497
               +  T    L AC       EG    +L + IH    K     + Y C  ++ +  R
Sbjct: 259 GPASNSYTIVSALTAC-------EGFSYAKLGKEIHAAVLKSTHSFEVYVCNALIAMYAR 311

Query: 498 AGHIEAARNLIEDMPMEPNDVIWRTLL 524
            G +  A  ++  M    + V W +L+
Sbjct: 312 CGKMLEAGRILRLMN-NADVVTWNSLI 337


>gi|297736926|emb|CBI26127.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 181/558 (32%), Positives = 289/558 (51%), Gaps = 25/558 (4%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           KD   WNA++ +YS     ++AL +F  M       D+F+ +  L AC+ LG +  G++I
Sbjct: 34  KDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDRFTFTATLSACAGLGELRRGMKI 93

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H  +      S L + N LI +Y +C     AR++F++M I + VS+ S++  Y  SG  
Sbjct: 94  HAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRVFEEMSIMNEVSWCSLLFAYTSSGLF 153

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----------- 250
           + AR +FD MP +    I+WN +++GY Q    ++    +F+KM E  L           
Sbjct: 154 DVARVVFDGMPKKVE--IAWNIMISGYGQCGD-VELCLGLFKKMREDSLQPDQWTFSALV 210

Query: 251 --------ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
                    S+  M+HG +     DD   +F+ +     VSW  MID + K+G    A  
Sbjct: 211 NALCELQEPSYGYMMHGFIIKSGWDDVMKVFESIGILTQVSWNAMIDAHMKIGDTHEAFL 270

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           +F   P+++VV+  +M+ GY RNG+  +AL  F  M  E ++ PDD +   VL A + L 
Sbjct: 271 VFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMM-ENHIQPDDFTFGAVLHACSSLA 329

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
            +  G  IH  +    F      G  L++MY+KCG I+ +   F++I    +  WNAM+ 
Sbjct: 330 TLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFKEILGKDLVSWNAMLF 389

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482
           GL +HG    A +L  EM    ++PD +TF GLL  C+H+GL+++G   FE M  ++ L 
Sbjct: 390 GLGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCSHSGLIEKGQALFESMVSVYGLS 449

Query: 483 PELQHYGCMVDILGRAGHIEAARNLIEDMPM--EPNDVIWRTLLSACRNYENLNVGEPVA 540
            E +H  CMVD+LGR G++  AR L+++          +   LL AC  +  + +G  + 
Sbjct: 450 QETEHVVCMVDLLGRGGYLAQARELVDEYSRTGRAETSLPEALLGACFAHSEVRMGANLG 509

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
           ++L   +     SYVLLSN++   G W +A  VR  M +  +KK+PGCSWIE+   V  F
Sbjct: 510 EYLKVFEPQKEMSYVLLSNLYCVSGQWKEAEMVRKTMTDHGVKKMPGCSWIEVRNKVTVF 569

Query: 601 FVRDKSRLQVRDIYYMLD 618
              + S   + ++  +L+
Sbjct: 570 VAGNHSHPYMEELCKILN 587



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 197/442 (44%), Gaps = 50/442 (11%)

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
           S LF     I    + G +  AR+LFD+M  +D+V++N+M+  Y + G  + A  LF  M
Sbjct: 3   SHLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHM 62

Query: 212 PIRER-----NLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKM 266
            I           +  S   G  +L+ G++   Q+     +  L   NS++    KC   
Sbjct: 63  RIANSRPDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSA 122

Query: 267 DDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNG 326
             A+ +F++M   + VSW +++  Y   G  D+AR +FD MPK+  +A N M+ GY + G
Sbjct: 123 TSARRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCG 182

Query: 327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK----DQFSLN 382
                L +F  M+ E  L PD  +   +++A+ +L     G  +H ++ K    D   + 
Sbjct: 183 DVELCLGLFKKMR-EDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWDDVMKVF 241

Query: 383 GKHGV-------ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
              G+       A+ID + K G    A  VF+   + +V  W +MI G A +G GE A  
Sbjct: 242 ESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALS 301

Query: 436 LLMEMERLSIEPDDITFTGLLNACA-----------HAGLVKEGLLCF-----ELMRRIH 479
             ++M    I+PDD TF  +L+AC+           H  ++  G   +      L+    
Sbjct: 302 FFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYA 361

Query: 480 K--------------LEPELQHYGCMVDILGRAGHIEAARNLIEDM---PMEPNDVIWRT 522
           K              L  +L  +  M+  LG  GH   A  L E+M    M+P+ V +  
Sbjct: 362 KCGDIQGSNTAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTFIG 421

Query: 523 LLSACRNYENLNVGEPVAKHLI 544
           LL  C +   +  G+ + + ++
Sbjct: 422 LLMTCSHSGLIEKGQALFESMV 443



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 106/234 (45%), Gaps = 35/234 (14%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +K+   W ++I  Y+     ++AL  F  M++N +  D F+   VL ACS L  +  G  
Sbjct: 277 EKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKM 336

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           IHG +    F + + + N L+++Y +CG ++ +   F ++  +D VS+N+M+ G    G+
Sbjct: 337 IHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFKEILGKDLVSWNAMLFGLGMHGH 396

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
              A EL++ M                   + SG++            D +++  +L  C
Sbjct: 397 ATQALELYEEM-------------------VASGMK-----------PDKVTFIGLLMTC 426

Query: 261 VKCGKMDDAQALFDKMP-----KRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
              G ++  QALF+ M       ++      M+D   + G +  AR L DE  +
Sbjct: 427 SHSGLIEKGQALFESMVSVYGLSQETEHVVCMVDLLGRGGYLAQARELVDEYSR 480


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 180/523 (34%), Positives = 281/523 (53%), Gaps = 40/523 (7%)

Query: 103  ALVMFCLMLDNGVSVDKFSASLVLKACSRLG-LIEEGLQIHGLLRKVAFGSDLFLQNCLI 161
            AL + CL+ +        +  + LK+ SRL   +  G Q+H    K+   ++  +   L+
Sbjct: 537  ALRVHCLLPNP----SHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLL 592

Query: 162  SLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISW 221
            SLY +CG L  A+++FD+M    +V + ++I  Y+ +G+            +RE   ++ 
Sbjct: 593  SLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGD------------LREAVHVAR 640

Query: 222  NSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV 281
            N+  NG                     D  +   +L  C +   +   + ++    +  V
Sbjct: 641  NAFANGM------------------RPDSFTAVRVLTACARIADLATGETVWRAAEQEGV 682

Query: 282  VS----WANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
                      +D Y K G +  AR +FD+M  +D VA  AM+GGY  NG+  +AL++F  
Sbjct: 683  AQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLA 742

Query: 338  MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
            MQ E  + PD  ++   LSA  +LG +D G    R ++ D+F  N   G ALIDMY+KCG
Sbjct: 743  MQAE-GMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCG 801

Query: 398  SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            S   A  VF+Q+    +  WNAMI GL + G  ++AF L+ +ME+  ++ +D TF GLL 
Sbjct: 802  STVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLC 861

Query: 458  ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
            +C H GL+++G   F  M +++ + P ++HYGCMVD+L RAG ++ A  L++DMPM  N 
Sbjct: 862  SCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANA 921

Query: 518  VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
            VI   LL  C+ + N  + E V K LI ++  NS +YV+LSN+++  G W DA ++R  M
Sbjct: 922  VILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDM 981

Query: 578  KERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            K + ++K+P CSW+E EG VHEF V DKS      IY  LD +
Sbjct: 982  KAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDEL 1024



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 110/433 (25%), Positives = 182/433 (42%), Gaps = 85/433 (19%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDP--FLWNA 89
           Q+HAR +      N H+ T L++ ++   C  L    R        F E   P    W A
Sbjct: 571 QLHARSLKLPSHTNPHVLTSLLSLYAK--CGLLHRAQR-------VFDEMPHPSTVPWTA 621

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA 149
           +I  Y    D +EA+ +      NG+  D F+A  VL AC+R+  +  G  +     +  
Sbjct: 622 LITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEG 681

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD 209
               +F+    + LYV+CG +  AR++FDKM  +D+V++ +M+ GY  +G+   A +LF 
Sbjct: 682 VAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFL 741

Query: 210 SMPI---------------------------RERNLISWNSVLNG----------YAQLK 232
           +M                             +   ++ W+  L+           YA+  
Sbjct: 742 AMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCG 801

Query: 233 SGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV----SWANMI 288
           S ++ AW +F++M ++D+I WN+M+ G    G    A AL  +M K  V     ++  ++
Sbjct: 802 STVE-AWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLL 860

Query: 289 DGYAKLGRVDIARRLFDEM-------PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
                 G +   RR F  M       P+ +   C  M+    R G   +A ++ D+M   
Sbjct: 861 CSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGC--MVDLLSRAGLLQEAHQLVDDM--- 915

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL---------NGKHGVALIDM 392
               P  A+ VI       LG +  G  IHR  E  +  L         N  + V L ++
Sbjct: 916 ----PMPANAVI-------LGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNI 964

Query: 393 YSKCGSIENAIKV 405
           YS  G  E+A K+
Sbjct: 965 YSNRGRWEDAAKL 977


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 206/633 (32%), Positives = 329/633 (51%), Gaps = 49/633 (7%)

Query: 15  QSTLLLLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
           QS   +L+ C    D+     +H   + +    +T+L+   +  +S   C  LT      
Sbjct: 9   QSFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSK--CNLLTT----- 61

Query: 72  FFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCL-MLDNGVSVDKFSASLVLKA 128
              +HAF +  +P  F +NA+I  Y+     KE+L+     + D     D  S + ++ A
Sbjct: 62  --AHHAFNQTHEPNVFSFNALIAAYA-----KESLIHVAHHLFDQIPQPDLVSFNTLINA 114

Query: 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD---KMGIRDS 185
            +  G     L + G +R++    D F  + +I+    C ++   RQL       G    
Sbjct: 115 YADRGDTLSALSLFGEMREMGLVMDGFTFSGVIT--ACCNHVGLIRQLHSLAFSSGFDSY 172

Query: 186 VSY-NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244
           VS  NS++  Y K+G +E A  +F+ M    R+ +SWNS++  Y Q K GL+ A  ++  
Sbjct: 173 VSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLK-ALALYRD 231

Query: 245 MPER----DLISWNSML--HGCVK---CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG 295
           M  R    D+ +  S+L    CV+    G    A+A+     K   V  + +ID YAK G
Sbjct: 232 MVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVG-SGLIDMYAKCG 290

Query: 296 R-VDIARRLFDEMPKRDVVACNAMMGGYVRNG-YSMKALEIFDNMQCELYLHPDDASLVI 353
             +  +R++F+E+   D+V  N M+ GY +N   S++ALE F  MQ   Y  PDD S V 
Sbjct: 291 AGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYW-PDDCSFVC 349

Query: 354 VLSAIAQLGHIDKGVAIHRYLEK-----DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ 408
            +SA + L    +G   H    K     +Q S+N     AL+ MYSKCG++++A K+F++
Sbjct: 350 AISACSNLSSPSQGKQFHALAMKSEIPSNQISVNN----ALVTMYSKCGNLQDARKLFQR 405

Query: 409 IEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
           +   +    N++I G A HG+G  + +L  +M   SI P  IT   +L+ACAH G V+EG
Sbjct: 406 MPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEG 465

Query: 469 LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACR 528
              F +M+ I  +EPE +HY CM+D+LGRAG +  A  LI+ MP  P    W  LL ACR
Sbjct: 466 KKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACR 525

Query: 529 NYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGC 588
            Y N+ + E  A   + ++ +N+  Y++L++M++    W +A R+R +M++R ++K PGC
Sbjct: 526 KYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGC 585

Query: 589 SWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMW 621
           SWIEL   VH F   D S  ++++I+  LD M+
Sbjct: 586 SWIELNKRVHVFVAEDNSHPRIKEIHMYLDEMF 618


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 197/663 (29%), Positives = 334/663 (50%), Gaps = 89/663 (13%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           +H   +  GF  + ++   L+  +S        + ARY+F +       +D   WN++I 
Sbjct: 143 VHEHAMEMGFESDLYIGNALIDMYSR---FVDLDNARYVFEEM----SNRDSVSWNSLIS 195

Query: 93  TYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGS 152
            Y      ++AL M+      G+  D F+ S VL AC  L  ++EG+ +HG++ K+    
Sbjct: 196 GYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAG 255

Query: 153 DLFLQNCLISLYVR--------------------------CGYLEFAR-----QLFDKM- 180
           D+ + N L+S+Y +                          CGY +  R     +LF  M 
Sbjct: 256 DVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI 315

Query: 181 ------------GIR-------------------------DSVSYNSMIDGYVKSGNIES 203
                        IR                         D+V+ N +ID Y K G++ +
Sbjct: 316 DGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLA 375

Query: 204 ARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQ-FAWQIFEKMPERDLISWNSMLHG 259
           A+E+FD+   ++   ++WNS++NGY Q    K GL+ F     E+ P  D +++  +L  
Sbjct: 376 AQEVFDTTKCKDS--VTWNSLINGYTQSGYYKEGLESFKMMKMERKP--DSVTFVLLLSI 431

Query: 260 CVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
             +   ++  + +   + K     +++   +++D YAK G +D   ++F  M   D+++ 
Sbjct: 432 FSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISW 491

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           N ++   V         ++ + M+ E  L PD+A+++ +L   + L    +G  IH Y+ 
Sbjct: 492 NTVIASSVHFDDCTVGFQMINEMRTE-GLMPDEATVLGILPMCSLLAVRRQGKEIHGYIF 550

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           K  F  N   G ALI+MYSKCGS+EN IKVF+ +++  V  W A+I+   ++G G+ A  
Sbjct: 551 KSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALK 610

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
              +ME   + PD + F   + AC+H+G+VKEGL  F+ M+  + LEP ++HY C+VD+L
Sbjct: 611 AFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLL 670

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
            R+G +  A   I  MPM+P+  +W  LLSACR   N N+ + V+K ++ ++S ++  YV
Sbjct: 671 ARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYV 730

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY 615
           L+SN++A LG W+  + VR+ MK + LKK PG SWIE++  V+ F   DKS  Q   +  
Sbjct: 731 LVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKD 790

Query: 616 MLD 618
           +L+
Sbjct: 791 LLE 793



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 152/606 (25%), Positives = 274/606 (45%), Gaps = 99/606 (16%)

Query: 5   ANYNQPCNSTQ-----STLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSS- 58
           +N+N     +Q     S L  L   K    +  +H+ +IT+G   +   + KL++ ++  
Sbjct: 8   SNFNNTPEPSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQV 67

Query: 59  -SPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV 117
             P + ++ F         +     + +LWN+II+  +H     +AL  +  M +  +  
Sbjct: 68  KDPISSVSVF--------RSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQP 119

Query: 118 DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLF 177
           D F+   V+ +C+R+  +E G  +H    ++ F SDL++ N LI +Y R   L+ AR +F
Sbjct: 120 DAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVF 179

Query: 178 DKMGIRDSVSYNSMIDGYVKSGNIESARELFDS-----------------------MPIR 214
           ++M  RDSVS+NS+I GY  +G  E A +++                         M ++
Sbjct: 180 EEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVK 239

Query: 215 E--------------RNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
           E               ++I  N +L+ Y + +  L+ A ++F KM  +D ++WN+M+ G 
Sbjct: 240 EGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFER-LREARRVFSKMAVKDSVTWNTMICGY 298

Query: 261 VKCGKMDDAQALFDKM-----PKR---------------------------------DVV 282
            + G+ + +  LF  M     P                                   D V
Sbjct: 299 AQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTV 358

Query: 283 SWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
           +   +ID YAK G +  A+ +FD    +D V  N+++ GY ++GY  + LE F  M+ E 
Sbjct: 359 ACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKME- 417

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENA 402
              PD  + V++LS  +QL  I++G  IH  + K  F      G +L+D+Y+KCG +++ 
Sbjct: 418 -RKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDL 476

Query: 403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
           +KVF  +    +  WN +I          + F ++ EM    + PD+ T  G+L  C+  
Sbjct: 477 LKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLL 536

Query: 463 GLVKEGLLCFELMRRIHK--LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIW 520
            + ++G    E+   I K   E  +     ++++  + G +E    + + M  E + V W
Sbjct: 537 AVRRQGK---EIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMK-EKDVVTW 592

Query: 521 RTLLSA 526
             L+SA
Sbjct: 593 TALISA 598



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 178/396 (44%), Gaps = 24/396 (6%)

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPE 247
           +I  Y +  +  S+  +F S+     N+  WNS++            L +  ++ EK  +
Sbjct: 60  LISKYAQVKDPISSVSVFRSIS-PTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQ 118

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRL 303
            D  ++ S+++ C +   ++    + +   +     D+     +ID Y++   +D AR +
Sbjct: 119 PDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYV 178

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           F+EM  RD V+ N+++ GY  NG+   AL+++   +    + PD  ++  VL A   L  
Sbjct: 179 FEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMV-PDCFTMSSVLLACGSLMA 237

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           + +GVA+H  +EK   + +   G  L+ MY K   +  A +VF ++       WN MI G
Sbjct: 238 VKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICG 297

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK--- 480
            A  G  E +  L M+M      PD ++ T  + AC  +G ++ G       + +HK   
Sbjct: 298 YAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACGQSGDLQVG-------KFVHKYLI 349

Query: 481 ---LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
               E +      ++D+  + G + AA+ +  D     + V W +L++          G 
Sbjct: 350 GSGFECDTVACNILIDMYAKCGDLLAAQEVF-DTTKCKDSVTWNSLINGYTQSGYYKEGL 408

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV 573
              K +      +S ++VLL ++F+ L   N  R +
Sbjct: 409 ESFKMMKMERKPDSVTFVLLLSIFSQLADINQGRGI 444


>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 632

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 179/542 (33%), Positives = 296/542 (54%), Gaps = 65/542 (11%)

Query: 102 EALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL--RKVAFGSDLFLQNC 159
           E+++    +L +G   D +  + +L   ++ G IE   ++   +  R VA        N 
Sbjct: 102 ESMLFLAHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVAD------WNV 155

Query: 160 LISLYVRCGYLEFARQLFDKMG----IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRE 215
           +IS Y +CG  E A  LF  MG     R+ +++ +MI G+ K GN+++AR  FD MP  E
Sbjct: 156 MISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMP--E 213

Query: 216 RNLISWNSVLNGYAQLKSGLQFAWQIFEKM-----PERDLISWNSMLHGC---------- 260
           R+++SWN++L+GYAQ     +   ++F  M      + D  +W +++  C          
Sbjct: 214 RSVVSWNAMLSGYAQ-GGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSE 272

Query: 261 --------------------------VKCGKMDDAQALFDKM---PKRDVVSWANMIDGY 291
                                      KCG ++ A  +F+++     R  V W  MI  Y
Sbjct: 273 SIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAY 332

Query: 292 AKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDAS 350
           A++G +  A+ LFD+MP+RD V+ N+M+ GY +NG S KA+++F+ M   E    PD+ +
Sbjct: 333 ARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVT 392

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE 410
           +V V SA   LG +  G      L+ +   ++     +LI+MYS+CGS+++A+ +F+++ 
Sbjct: 393 MVSVFSACGHLGELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMA 452

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470
              +  +N +I+G A HG G  + +LL +M+   IEPD IT+  +L AC+HAGL+ EG  
Sbjct: 453 TRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQR 512

Query: 471 CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNY 530
            FE ++      P++ HY CM+D+LGRAG +E A  LI+ MPMEP+  I+ +LL+A   +
Sbjct: 513 LFESIKF-----PDVDHYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIH 567

Query: 531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSW 590
           + + +GE  A  L  ++  NS +Y LLSN++A  G W +  +VR  M+++ +KK  G SW
Sbjct: 568 KQVELGELAAAKLFKVEPHNSGNYALLSNIYASAGRWKEGDKVRDTMRKQGVKKTTGLSW 627

Query: 591 IE 592
           +E
Sbjct: 628 LE 629


>gi|326517559|dbj|BAK03698.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 529

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 179/523 (34%), Positives = 287/523 (54%), Gaps = 21/523 (4%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDK--FSASLVLKACSRL---GLIEEGLQI 141
           W   I+  +    P+ A+ ++     +G +     F+ + VLK+ SRL    +       
Sbjct: 13  WTLAIRAAADQGRPRRAIALYLSSFRSGAAHRPCPFALAAVLKSVSRLPVHTVATAAASF 72

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS-------VSYNSMIDG 194
           H  L ++   +  +    L  LY R      AR L D+             VS NS++  
Sbjct: 73  HAHLLRLGLLAHPYPHAALAHLYSRDPVA--ARSLLDETPPARGRAPHSLLVSRNSLLAS 130

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISW 253
            ++SG++ +AR LFD MP+R+  ++SWNS++ G A  K+G L  A ++F++MPER+  SW
Sbjct: 131 LLRSGDLPAARALFDQMPVRD--VVSWNSMVAGLA--KAGRLDRAIELFDQMPERNAASW 186

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP-KRDV 312
           N+++ G +  G +  A+ +F++MP R  +SW  MI GYAK G V  A  LF+ M  K D+
Sbjct: 187 NAVICGLIAHGHLTRAREMFEQMPVRSNISWITMISGYAKAGDVQAAAGLFERMENKNDL 246

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
            A NAM+  Y +NG + +A+ +F+ M +  + + P++ +   V SA +QLG++  G+ + 
Sbjct: 247 YAWNAMIACYAQNGCAREAIGVFNRMLKPHVCVLPNEKTFSSVTSACSQLGNLRFGLWVQ 306

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
            ++      L+     AL+D+Y+K G I+ A  +F+ +    V  ++AMI G  ++G   
Sbjct: 307 SFMVSLGIELDDHLRTALVDLYTKSGQIDRAFDLFKGLSKRDVVSYSAMIVGCGMNGKLN 366

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            A  L  EM   +I P+ ++F GLL+A  HAGLV+E   CF  M   +K+ P ++HY  M
Sbjct: 367 EAIGLFNEMSDANILPNAVSFVGLLSAYNHAGLVEEARACFTSMSSKYKIRPSMEHYTIM 426

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551
           VD+LGR+G ++ A  LI  MPM+P   +W  LL +CR + N+ +GE +A          S
Sbjct: 427 VDLLGRSGKLDEAFQLIMQMPMQPRASVWGALLLSCRLHNNVELGEVIASKCFEQAPGES 486

Query: 552 SSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
             Y+LL N++A    W+  RR+R  MKER L K+PG SW+  E
Sbjct: 487 GYYILLGNIYASANKWDKVRRLRKTMKERCLSKMPGSSWVLAE 529



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 119/251 (47%), Gaps = 21/251 (8%)

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV--DKFSASLVLKACSRL 132
           +     K D + WNA+I  Y+     +EA+ +F  ML   V V  ++ + S V  ACS+L
Sbjct: 237 FERMENKNDLYAWNAMIACYAQNGCAREAIGVFNRMLKPHVCVLPNEKTFSSVTSACSQL 296

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
           G +  GL +   +  +    D  L+  L+ LY + G ++ A  LF  +  RD VSY++MI
Sbjct: 297 GNLRFGLWVQSFMVSLGIELDDHLRTALVDLYTKSGQIDRAFDLFKGLSKRDVVSYSAMI 356

Query: 193 DGYVKSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERD 249
            G   +G +  A  LF+ M       N +S+  +L+ Y    +GL + A   F  M  + 
Sbjct: 357 VGCGMNGKLNEAIGLFNEMSDANILPNAVSFVGLLSAYNH--AGLVEEARACFTSMSSKY 414

Query: 250 LISWNSMLHGCV------KCGKMDDAQALFDKMPKRDVVS-WANM-----IDGYAKLGRV 297
            I   SM H  +      + GK+D+A  L  +MP +   S W  +     +    +LG V
Sbjct: 415 KIR-PSMEHYTIMVDLLGRSGKLDEAFQLIMQMPMQPRASVWGALLLSCRLHNNVELGEV 473

Query: 298 DIARRLFDEMP 308
            IA + F++ P
Sbjct: 474 -IASKCFEQAP 483


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 185/570 (32%), Positives = 313/570 (54%), Gaps = 27/570 (4%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGV-SVDKFSASLVLKACSRLGLIEEGLQ 140
           +D   WN++I  Y       EA+  +  M+ +GV ++++ + S +L   S  G ++ G Q
Sbjct: 100 RDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQ 159

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           IHG + K  FG+ +F+ + L+ +Y + G +  A Q+FD++  R+ V YN+MI G ++SG 
Sbjct: 160 IHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGM 219

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF-AWQIFEKMPER----DLISWNS 255
           ++ ++ LF  M  +ER+ ISW +++ G  Q  +GL+  A  +F  M +     D  ++ S
Sbjct: 220 VKDSKRLFHGM--KERDSISWTTMITGLIQ--NGLEAEAMDLFRDMRQEGMAMDQYTFGS 275

Query: 256 MLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           +L  C     + + + +   + +     +V   + ++D Y K   V  A  +F  M  ++
Sbjct: 276 VLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKN 335

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           VV+  AM+ GY +NG+S +A+ +F +MQ    + PDD +L  V+S+ A L  +++G   H
Sbjct: 336 VVSWTAMLVGYGQNGFSEEAVRVFCDMQ-RNGIEPDDFTLGSVISSCANLASLEEGAQFH 394

Query: 372 -RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
            + L     S       ALI +Y KCGSIE++ ++F+++       W A+++G A  G  
Sbjct: 395 CQALVSGLISFITVSN-ALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKA 453

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
               DL   M    ++PD +TF  +L+AC+ AGLV+ G   FE M + H + P   HY C
Sbjct: 454 NETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTC 513

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           M+D+ GRAG +E A+N I  MP  P+ + W TLLS+CR Y N  +G+  A+ L+ +D  N
Sbjct: 514 MIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQN 573

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQV 610
            + Y+LLS+++A  G W++  ++R  M+E+  +K PG SWI+ +  V+ F   D+S    
Sbjct: 574 PAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFS 633

Query: 611 RDIYY--------MLDNMWTPDSVATSCTH 632
             IY         M++  + PD  A+S  H
Sbjct: 634 DQIYAELEKLNHKMIEEGYVPD--ASSVLH 661



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 127/448 (28%), Positives = 224/448 (50%), Gaps = 46/448 (10%)

Query: 127 KACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSV 186
           K C       +  ++H L+ K     + FL N LI+ Y + G + +AR +FDKM   +S 
Sbjct: 13  KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSF 72

Query: 187 SYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP 246
           S+N+M+  Y KSG++ + +E+F  MP   R+ +SWNS+++GY    S ++ A + +  M 
Sbjct: 73  SWNTMLSAYSKSGDLSTMQEIFSIMP--NRDGVSWNSLISGYVCYGSVVE-AVKTYNSMM 129

Query: 247 ERDL-----ISWNSML-----HGCV------------------------------KCGKM 266
           +  +     I++++ML      GCV                              K G +
Sbjct: 130 KDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLV 189

Query: 267 DDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNG 326
             A  +FD++ +R+VV +  MI G  + G V  ++RLF  M +RD ++   M+ G ++NG
Sbjct: 190 SVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNG 249

Query: 327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG 386
              +A+++F +M+ E  +  D  +   VL+A   L  + +G  IH  + +  ++ N   G
Sbjct: 250 LEAEAMDLFRDMRQE-GMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVG 308

Query: 387 VALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE 446
            AL+DMY KC S+  A  VF+++ + +V  W AM+ G   +G  E A  +  +M+R  IE
Sbjct: 309 SALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIE 368

Query: 447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARN 506
           PDD T   ++++CA+   ++EG   F     +  L   +     ++ + G+ G IE +  
Sbjct: 369 PDDFTLGSVISSCANLASLEEGAQ-FHCQALVSGLISFITVSNALITLYGKCGSIEDSNQ 427

Query: 507 LIEDMPMEPNDVIWRTLLSACRNYENLN 534
           L ++M    ++V W  L+S    +   N
Sbjct: 428 LFDEMSFR-DEVSWTALVSGYAQFGKAN 454


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 205/682 (30%), Positives = 337/682 (49%), Gaps = 82/682 (12%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           S  + L   ++  +++ + Q HA++I  GF  +  L TKL    S         +AR IF
Sbjct: 19  SKNTYLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAI---YYARDIF 75

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFC-LMLDNGVSVDKFSASLVLKACSR 131
                  ++ D FL+N +++ +S    P  +L +F  L     +  +  + +  + A S 
Sbjct: 76  LSV----QRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASG 131

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
                 G  IHG        S+L L + ++ +Y +   +E AR++FD+M  +D++ +N+M
Sbjct: 132 FRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTM 191

Query: 192 IDGYVKSG----NIESAREL-------------FDSMP----IRERNL------------ 218
           I GY K+     +I+  R+L              D +P    ++E  L            
Sbjct: 192 ISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTG 251

Query: 219 -ISWNSVLNGYAQLKSG---LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFD 274
             S + VL G+  L S    ++    +F +  + D++++N+M+HG    G+ + + +LF 
Sbjct: 252 CYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFK 311

Query: 275 KM----------------P----------------KRDVVSWANMIDG----YAKLGRVD 298
           ++                P                K + +S A++       Y+KL  ++
Sbjct: 312 ELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIE 371

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
            AR+LFDE P++ + + NAM+ GY +NG +  A+ +F  MQ   +  P+  ++  +LSA 
Sbjct: 372 SARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEF-SPNPVTITCILSAC 430

Query: 359 AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWN 418
           AQLG +  G  +H  +    F  +     ALI MY+KCGSI  A ++F+ +   +   WN
Sbjct: 431 AQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWN 490

Query: 419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRI 478
            MI+G  +HG G+ A ++  EM    I P  +TF  +L AC+HAGLVKEG   F  M   
Sbjct: 491 TMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHR 550

Query: 479 HKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEP 538
           +  EP ++HY CMVDILGRAGH++ A   IE M +EP   +W TLL ACR +++ N+   
Sbjct: 551 YGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLART 610

Query: 539 VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVH 598
           V++ L  +D  N   +VLLSN+ +    +  A  VR   K+R L K PG + IE+    H
Sbjct: 611 VSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPH 670

Query: 599 EFFVRDKSRLQVRDIYYMLDNM 620
            F   D+S  QV++IY  L+ +
Sbjct: 671 VFTSGDQSHPQVKEIYEKLEKL 692


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 197/663 (29%), Positives = 334/663 (50%), Gaps = 89/663 (13%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           +H   +  GF  + ++   L+  +S        + ARY+F +       +D   WN++I 
Sbjct: 143 VHEHAMEMGFESDLYIGNALIDMYSR---FVDLDNARYVFEEM----SNRDSVSWNSLIS 195

Query: 93  TYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGS 152
            Y      ++AL M+      G+  D F+ S VL AC  L  ++EG+ +HG++ K+    
Sbjct: 196 GYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAG 255

Query: 153 DLFLQNCLISLYVR--------------------------CGYLEFAR-----QLFDKM- 180
           D+ + N L+S+Y +                          CGY +  R     +LF  M 
Sbjct: 256 DVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI 315

Query: 181 ------------GIR-------------------------DSVSYNSMIDGYVKSGNIES 203
                        IR                         D+V+ N +ID Y K G++ +
Sbjct: 316 DGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLA 375

Query: 204 ARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQ-FAWQIFEKMPERDLISWNSMLHG 259
           A+E+FD+   ++   ++WNS++NGY Q    K GL+ F     E+ P  D +++  +L  
Sbjct: 376 AQEVFDTTKCKDS--VTWNSLINGYTQSGYYKEGLESFKMMKMERKP--DSVTFVLLLSI 431

Query: 260 CVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
             +   ++  + +   + K     +++   +++D YAK G +D   ++F  M   D+++ 
Sbjct: 432 FSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISW 491

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           N ++   V         ++ + M+ E  L PD+A+++ +L   + L    +G  IH Y+ 
Sbjct: 492 NTVIASSVHFDDCTVGFQMINEMRTE-GLMPDEATVLGILPMCSLLAVRRQGKEIHGYIF 550

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           K  F  N   G ALI+MYSKCGS+EN IKVF+ +++  V  W A+I+   ++G G+ A  
Sbjct: 551 KSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALK 610

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
              +ME   + PD + F   + AC+H+G+VKEGL  F+ M+  + LEP ++HY C+VD+L
Sbjct: 611 AFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLL 670

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
            R+G +  A   I  MPM+P+  +W  LLSACR   N N+ + V+K ++ ++S ++  YV
Sbjct: 671 ARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYV 730

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY 615
           L+SN++A LG W+  + VR+ MK + LKK PG SWIE++  V+ F   DKS  Q   +  
Sbjct: 731 LVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKD 790

Query: 616 MLD 618
           +L+
Sbjct: 791 LLE 793



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 153/610 (25%), Positives = 275/610 (45%), Gaps = 99/610 (16%)

Query: 5   ANYNQPCNSTQ-----STLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSS- 58
           +N+N     +Q     S L  L   K    +  +H+ +IT+G   +   + KL++ ++  
Sbjct: 8   SNFNNTPEPSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQV 67

Query: 59  -SPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV 117
             P + ++ F         +     + +LWN+II+  +H     +AL  +  M +  +  
Sbjct: 68  KDPISSVSVF--------RSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQP 119

Query: 118 DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLF 177
           D F+   V+ +C+R+  +E G  +H    ++ F SDL++ N LI +Y R   L+ AR +F
Sbjct: 120 DAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVF 179

Query: 178 DKMGIRDSVSYNSMIDGYVKSGNIESARELFDS-----------------------MPIR 214
           ++M  RDSVS+NS+I GY  +G  E A +++                         M ++
Sbjct: 180 EEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVK 239

Query: 215 E--------------RNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
           E               ++I  N +L+ Y + +  L+ A ++F KM  +D ++WN+M+ G 
Sbjct: 240 EGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFER-LREARRVFSKMAVKDSVTWNTMICGY 298

Query: 261 VKCGKMDDAQALFDKM-----PKR---------------------------------DVV 282
            + G+ + +  LF  M     P                                   D V
Sbjct: 299 AQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTV 358

Query: 283 SWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
           +   +ID YAK G +  A+ +FD    +D V  N+++ GY ++GY  + LE F  M+ E 
Sbjct: 359 ACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKME- 417

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENA 402
              PD  + V++LS  +QL  I++G  IH  + K  F      G +L+D+Y+KCG +++ 
Sbjct: 418 -RKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDL 476

Query: 403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
           +KVF  +    +  WN +I          + F ++ EM    + PD+ T  G+L  C+  
Sbjct: 477 LKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLL 536

Query: 463 GLVKEGLLCFELMRRIHK--LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIW 520
            + ++G    E+   I K   E  +     ++++  + G +E    + + M  E + V W
Sbjct: 537 AVRRQGK---EIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMK-EKDVVTW 592

Query: 521 RTLLSACRNY 530
             L+SA   Y
Sbjct: 593 TALISAFGMY 602



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 178/396 (44%), Gaps = 24/396 (6%)

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPE 247
           +I  Y +  +  S+  +F S+     N+  WNS++            L +  ++ EK  +
Sbjct: 60  LISKYAQVKDPISSVSVFRSIS-PTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQ 118

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRL 303
            D  ++ S+++ C +   ++    + +   +     D+     +ID Y++   +D AR +
Sbjct: 119 PDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYV 178

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           F+EM  RD V+ N+++ GY  NG+   AL+++   +    + PD  ++  VL A   L  
Sbjct: 179 FEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMT-GMVPDCFTMSSVLLACGSLMA 237

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           + +GVA+H  +EK   + +   G  L+ MY K   +  A +VF ++       WN MI G
Sbjct: 238 VKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICG 297

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK--- 480
            A  G  E +  L M+M      PD ++ T  + AC  +G ++ G       + +HK   
Sbjct: 298 YAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACGQSGDLQVG-------KFVHKYLI 349

Query: 481 ---LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
               E +      ++D+  + G + AA+ +  D     + V W +L++          G 
Sbjct: 350 GSGFECDTVACNILIDMYAKCGDLLAAQEVF-DTTKCKDSVTWNSLINGYTQSGYYKEGL 408

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV 573
              K +      +S ++VLL ++F+ L   N  R +
Sbjct: 409 ESFKMMKMERKPDSVTFVLLLSIFSQLADINQGRGI 444


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 180/539 (33%), Positives = 291/539 (53%), Gaps = 31/539 (5%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           WN  ++  ++     E++ ++  ML +G S D FS   +LK+C+ L L   G Q+H  + 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK--MGIRDSVSYNSMIDGYVKSGNIESA 204
           K    ++ F+   LIS+Y +CG +  AR++F++     + SV YN++I GY  +  +  A
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140

Query: 205 RELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG-CVKC 263
             +F  M  +E  +   +  + G   L +  ++ W                 LHG CVK 
Sbjct: 141 AYMFRRM--KETGVSVDSVTMLGLVPLCTVPEYLW-------------LGRSLHGQCVK- 184

Query: 264 GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV 323
           G +D   A+ +           + I  Y K G V+  RRLFDEMP + ++  NA++ GY 
Sbjct: 185 GGLDSEVAVLN-----------SFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYS 233

Query: 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG 383
           +NG +   LE+++ M+    + PD  +LV VLS+ A LG    G  + + +E + F  N 
Sbjct: 234 QNGLAYDVLELYEQMKSS-GVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNV 292

Query: 384 KHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
               A I MY++CG++  A  VF+ +   S+  W AMI    +HG+GE+   L  +M + 
Sbjct: 293 FVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKR 352

Query: 444 SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503
            I PD   F  +L+AC+H+GL  +GL  F  M+R +KLEP  +HY C+VD+LGRAG ++ 
Sbjct: 353 GIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDE 412

Query: 504 ARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563
           A   IE MP+EP+  +W  LL AC+ ++N+++ E     +I  + +N   YVL+SN+++ 
Sbjct: 413 AMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSD 472

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWT 622
                   R+R MM+ER  +K PG S++E +G VH F   D+S  Q  +++ MLD + T
Sbjct: 473 SKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELET 531


>gi|242065790|ref|XP_002454184.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
 gi|241934015|gb|EES07160.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
          Length = 530

 Score =  305 bits (780), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 151/368 (41%), Positives = 232/368 (63%), Gaps = 2/368 (0%)

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
            S+L G  + G M DA+ LFD + +R+VVSW  ++ GYA+ G+V  A  LF+ MP+RDV 
Sbjct: 158 TSVLDGYSRHGMMADARKLFDGLTERNVVSWTALVSGYARAGKVGDAIVLFERMPERDVA 217

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
           A NA++ G  +NG  ++A+ IF  M    +  P+  ++  VLSA   LG +  G  IH Y
Sbjct: 218 AWNAIIAGCSQNGLFVEAVGIFGRMVGAGF-RPNATTVSCVLSACGHLGMLKIGKLIHCY 276

Query: 374 LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
             +            LIDMY KCG++E A  +F+++ D S+  WN++IN LA+HG  + A
Sbjct: 277 AWRTCVGFGSSVLNGLIDMYGKCGNLEGARWIFDEVSDRSLTTWNSLINCLALHGHSKCA 336

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493
             +  EM    +EPD +TF GLLNAC H G V EG+  FELM+  H +EPE++HYGC++D
Sbjct: 337 ISVFNEMRGEGVEPDVVTFVGLLNACTHGGFVDEGIRYFELMQHEHGIEPEIEHYGCIID 396

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS 553
           +LGRAG  + A N+I DM +E ++V+W +LL+ACR +  +   E   + L+ +D +N++ 
Sbjct: 397 LLGRAGRFQDALNVISDMRIEADEVMWGSLLNACRVHRQVEFAELAIRKLLELDPNNANY 456

Query: 554 YVLLSNMFAGLGMWNDARRVRSMMKERNL-KKLPGCSWIELEGVVHEFFVRDKSRLQVRD 612
            V+L+N+++  G+W + R+VR  +KE N+ KKLPGCSWIE++   H F+  D +  +  +
Sbjct: 457 VVMLANVYSEGGLWEEVRKVRKFVKEENIGKKLPGCSWIEVDRKTHRFYSGDDAHPESEN 516

Query: 613 IYYMLDNM 620
           IY  L+++
Sbjct: 517 IYDTLEDL 524



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 133/512 (25%), Positives = 239/512 (46%), Gaps = 69/512 (13%)

Query: 9   QPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFA 68
            P  S +  + +L +C T   + Q+HA     G       T  L+  F++   + LT +A
Sbjct: 4   SPQLSHRDFVAVLSRCSTRAHLEQLHAHAFVAGRAAAQTTTFHLI-RFAAFRLSCLT-YA 61

Query: 69  RYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALV-----------MFCLMLDNG-VS 116
           R++F            FL++AI+  Y        +             +F  ML +G  +
Sbjct: 62  RHLFDA----TPHPSVFLYSAILSAYVSAAATASSYAHAHAHARDALALFLRMLRHGRPA 117

Query: 117 VDKFSASLVLKACSRLGLIEEGL--QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFAR 174
            ++F   LVL+A S +G+   G+   IH    K  F     ++  ++  Y R G +  AR
Sbjct: 118 PNQFVYPLVLRAASGVGV---GIVKSIHSHACKSGFCGHDIIRTSVLDGYSRHGMMADAR 174

Query: 175 QLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG 234
           +LFD +  R+ VS+ +++ GY ++G +  A  LF+ MP  ER++ +WN+++ G +Q  +G
Sbjct: 175 KLFDGLTERNVVSWTALVSGYARAGKVGDAIVLFERMP--ERDVAAWNAIIAGCSQ--NG 230

Query: 235 LQF-AWQIFEKM------PERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN- 286
           L   A  IF +M      P    +S   +L  C   G +   + L      R  V + + 
Sbjct: 231 LFVEAVGIFGRMVGAGFRPNATTVS--CVLSACGHLGMLKIGK-LIHCYAWRTCVGFGSS 287

Query: 287 ----MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
               +ID Y K G ++ AR +FDE+  R +   N+++     +G+S  A+ +F+ M+ E 
Sbjct: 288 VLNGLIDMYGKCGNLEGARWIFDEVSDRSLTTWNSLINCLALHGHSKCAISVFNEMRGE- 346

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV--------ALIDMYS 394
            + PD  + V +L+A    G +D+G+   RY E  Q     +HG+         +ID+  
Sbjct: 347 GVEPDVVTFVGLLNACTHGGFVDEGI---RYFELMQH----EHGIEPEIEHYGCIIDLLG 399

Query: 395 KCGSIENAIKVFE--QIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITF 452
           + G  ++A+ V    +IE   V  W +++N   +H   ++ F  L   + L ++P++  +
Sbjct: 400 RAGRFQDALNVISDMRIEADEV-MWGSLLNACRVH--RQVEFAELAIRKLLELDPNNANY 456

Query: 453 TGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
             +L     A +  EG L +E +R++ K   E
Sbjct: 457 VVML-----ANVYSEGGL-WEEVRKVRKFVKE 482


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  305 bits (780), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 180/523 (34%), Positives = 281/523 (53%), Gaps = 40/523 (7%)

Query: 103  ALVMFCLMLDNGVSVDKFSASLVLKACSRLG-LIEEGLQIHGLLRKVAFGSDLFLQNCLI 161
            AL + CL+ +        +  + LK+ SRL   +  G Q+H    K+   ++  +   L+
Sbjct: 513  ALRVHCLLPNP----SHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLL 568

Query: 162  SLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISW 221
            SLY +CG L  A+++FD+M    +V + ++I  Y+ +G+            +RE   ++ 
Sbjct: 569  SLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGD------------LREAVHVAR 616

Query: 222  NSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV 281
            N+  NG                     D  +   +L  C +   +   + ++    +  V
Sbjct: 617  NAFANGM------------------RPDSFTAVRVLTACARIADLATGETVWRAAEQEGV 658

Query: 282  VS----WANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
                      +D Y K G +  AR +FD+M  +D VA  AM+GGY  NG+  +AL++F  
Sbjct: 659  AQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLA 718

Query: 338  MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
            MQ E  + PD  ++   LSA  +LG +D G    R ++ D+F  N   G ALIDMY+KCG
Sbjct: 719  MQAE-GMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCG 777

Query: 398  SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            S   A  VF+Q+    +  WNAMI GL + G  ++AF L+ +ME+  ++ +D TF GLL 
Sbjct: 778  STVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLC 837

Query: 458  ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
            +C H GL+++G   F  M +++ + P ++HYGCMVD+L RAG ++ A  L++DMPM  N 
Sbjct: 838  SCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANA 897

Query: 518  VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
            VI   LL  C+ + N  + E V K LI ++  NS +YV+LSN+++  G W DA ++R  M
Sbjct: 898  VILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDM 957

Query: 578  KERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            K + ++K+P CSW+E EG VHEF V DKS      IY  LD +
Sbjct: 958  KAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDEL 1000



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 110/433 (25%), Positives = 182/433 (42%), Gaps = 85/433 (19%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDP--FLWNA 89
           Q+HAR +      N H+ T L++ ++   C  L    R        F E   P    W A
Sbjct: 547 QLHARSLKLPSHTNPHVLTSLLSLYAK--CGLLHRAQR-------VFDEMPHPSTVPWTA 597

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA 149
           +I  Y    D +EA+ +      NG+  D F+A  VL AC+R+  +  G  +     +  
Sbjct: 598 LITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEG 657

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD 209
               +F+    + LYV+CG +  AR++FDKM  +D+V++ +M+ GY  +G+   A +LF 
Sbjct: 658 VAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFL 717

Query: 210 SMPI---------------------------RERNLISWNSVLNG----------YAQLK 232
           +M                             +   ++ W+  L+           YA+  
Sbjct: 718 AMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCG 777

Query: 233 SGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV----SWANMI 288
           S ++ AW +F++M ++D+I WN+M+ G    G    A AL  +M K  V     ++  ++
Sbjct: 778 STVE-AWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLL 836

Query: 289 DGYAKLGRVDIARRLFDEM-------PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
                 G +   RR F  M       P+ +   C  M+    R G   +A ++ D+M   
Sbjct: 837 CSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGC--MVDLLSRAGLLQEAHQLVDDM--- 891

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL---------NGKHGVALIDM 392
               P  A+ VI       LG +  G  IHR  E  +  L         N  + V L ++
Sbjct: 892 ----PMPANAVI-------LGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNI 940

Query: 393 YSKCGSIENAIKV 405
           YS  G  E+A K+
Sbjct: 941 YSNRGRWEDAAKL 953


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  305 bits (780), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 195/680 (28%), Positives = 330/680 (48%), Gaps = 94/680 (13%)

Query: 30  VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNA 89
           + +I  R+I  G   ++HL + LV  +    C  L + AR +  +       +D   WN 
Sbjct: 8   LKKIIFRVIKNGICPDSHLWSSLVNVYV--KCESL-QCARQVLEEMPI----QDVQQWNQ 60

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA 149
            + + +     +EA+ +F LM    + +++F  + ++ A + LG    G  IH  + K  
Sbjct: 61  KLSSANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYG 120

Query: 150 FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFD 209
           F SD+ + N  +++Y++   +E   Q F  M I +  S N+++ G+  +   +    +  
Sbjct: 121 FESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILI 180

Query: 210 SMPIR--ERNLIS-----------------------------------WNSVLNGYAQLK 232
            + +   E N+ +                                   WNS++N YA+  
Sbjct: 181 QLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCG 240

Query: 233 SGLQFAWQIFEKMPERDLISWNSMLHGCV------------------------------- 261
           S   +A ++F ++PERD++SW +++ G V                               
Sbjct: 241 SA-NYACKVFGEIPERDVVSWTALITGFVAEGYGSGLRIFNQMLAEGFNPNMYTFISILR 299

Query: 262 KCGKMDD--------AQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
            C  + D        AQ + + +   D V  A ++D YAK   ++ A  +F+ + KRD+ 
Sbjct: 300 SCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTA-LVDMYAKNRFLEDAETIFNRLIKRDLF 358

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
           A   ++ GY ++G   KA++ F  MQ E  + P++ +L   LS  +++  +D G  +H  
Sbjct: 359 AWTVIVAGYAQDGQGEKAVKCFIQMQRE-GVKPNEFTLASSLSGCSRIATLDSGRQLHSM 417

Query: 374 LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
             K   S +     AL+DMY+KCG +E+A  VF+ +       WN +I G + HG G  A
Sbjct: 418 AIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKA 477

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493
                 M      PD++TF G+L+AC+H GL++EG   F  + +I+ + P ++HY CMVD
Sbjct: 478 LKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVD 537

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS 553
           ILGRAG      + IE+M +  N +IW T+L AC+ + N+  GE  A  L  ++    S+
Sbjct: 538 ILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSN 597

Query: 554 YVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
           Y+LLSNMFA  GMW+D   VR++M  R +KK PGCSW+E+ G VH F   D S  ++R+I
Sbjct: 598 YILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREI 657

Query: 614 YYMLDNM--------WTPDS 625
           +  L ++        +TP++
Sbjct: 658 HLKLQDLHQKLMSVGYTPNT 677



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 112/458 (24%), Positives = 207/458 (45%), Gaps = 57/458 (12%)

Query: 20  LLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+ C +  D+N+   IH ++I +G   ++HL   LV  ++         +A  +F +  
Sbjct: 197 ILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSA---NYACKVFGEI- 252

Query: 77  AFREKKDPFLWNAIIKTY-SHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
               ++D   W A+I  + + G      L +F  ML  G + + ++   +L++CS L  +
Sbjct: 253 ---PERDVVSWTALITGFVAEGYGS--GLRIFNQMLAEGFNPNMYTFISILRSCSSLSDV 307

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
           + G Q+H  + K +   + F+   L+ +Y +  +LE A  +F+++  RD  ++  ++ GY
Sbjct: 308 DLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGY 367

Query: 196 VKSGNIESARELFDSMPIRE---RNLISWNSVLNG---YAQLKSGLQFAWQIFEKMPERD 249
            + G  E A + F  M  RE    N  +  S L+G    A L SG Q      +     D
Sbjct: 368 AQDGQGEKAVKCFIQMQ-REGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGD 426

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
           +   ++++    KCG ++DA+ +FD +  RD VSW  +I GY++ G+             
Sbjct: 427 MFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQ------------- 473

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
                     GG        KAL+ F+ M  E  + PD+ + + VLSA + +G I++G  
Sbjct: 474 ----------GG--------KALKAFEAMLDEGTV-PDEVTFIGVLSACSHMGLIEEGKK 514

Query: 370 IHRYLEKDQ-FSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIH 427
               L K    +   +H   ++D+  + G         E+++   +V  W  ++    +H
Sbjct: 515 HFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMH 574

Query: 428 GLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGL 464
             G + F     M+   +EP+ D  +  L N  A  G+
Sbjct: 575 --GNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGM 610



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 95/211 (45%), Gaps = 15/211 (7%)

Query: 16  STLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           S+L    +  TL+   Q+H+  I  G   +  + + LV  ++   C    E A  +F   
Sbjct: 397 SSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCV---EDAEVVFDGL 453

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
            +    +D   WN II  YS      +AL  F  MLD G   D+ +   VL ACS +GLI
Sbjct: 454 VS----RDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLI 509

Query: 136 EEGLQIHGLLRKVAFGSDLFLQN--CLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMID 193
           EEG +    L K+ +G    +++  C++ +  R G         ++M +  +V     + 
Sbjct: 510 EEGKKHFNSLSKI-YGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVL 568

Query: 194 GYVK-SGNIE----SARELFDSMPIRERNLI 219
           G  K  GNIE    +A +LF+  P  + N I
Sbjct: 569 GACKMHGNIEFGERAAMKLFELEPEIDSNYI 599


>gi|357118286|ref|XP_003560887.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Brachypodium distachyon]
          Length = 676

 Score =  305 bits (780), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 183/585 (31%), Positives = 295/585 (50%), Gaps = 58/585 (9%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D   WN ++  YS  L+  E L     + D     D  + + +L A  R GL+ E  ++
Sbjct: 90  RDAVSWNTLLAAYSRSLN-SEHLAAARRLFDEMPQRDAVTWNTLLGAYVRRGLMVEAEKL 148

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS-------------- 187
              + +    S     N +++ +   G +  A  +FD M ++DS S              
Sbjct: 149 FDEMPQRNVAS----WNTMVTGFFSAGQVNKALDMFDAMPVKDSASLGTLVSGFIKNGRL 204

Query: 188 ----------------------YNSMIDGYVKSGNIESARELFDSMP------------I 213
                                 YN++I  Y + G +  AR LFD +P            +
Sbjct: 205 HEAEELLTKRLRVTDMDEAVDAYNTLIAAYGQVGRVSDARRLFDMIPRGQYQCKTNNMRV 264

Query: 214 RERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
             RN++SWNS++  Y  +++G +  A +IF +MP++DL+SWN+M+ G  K   M++A+ L
Sbjct: 265 FARNVVSWNSMMTCY--IRTGDVCSAREIFNEMPDKDLVSWNTMIAGYTKVSDMEEAEKL 322

Query: 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
           F +MP  D+VSW  +I G+ + G V+ AR  FD MP+R  ++ N M+ GY +NG+   A+
Sbjct: 323 FWEMPDPDIVSWNLIIRGFTQKGDVEHARGFFDRMPERGTISWNTMISGYEQNGHYDGAI 382

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDM 392
           E+F  M  E    PD  +   VL+A A L  +  G  +H+ +EK  F  +     AL+ M
Sbjct: 383 ELFTKM-LEAGGTPDRHTFSSVLAACASLPMLRLGAQLHQLIEK-SFLPDTATSNALMTM 440

Query: 393 YSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITF 452
           YS+ G++ +A  +F+Q+    +  WNA+I G   HG    A  L  +M    + P  ITF
Sbjct: 441 YSRGGALTDAEAIFKQMPQKDLVSWNALIGGYEHHGCATEALQLFEDMRSARVMPTHITF 500

Query: 453 TGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP 512
             LL+AC +AGLV EG + F+ M   + +   ++HY  +V+++GR G ++ A  +I  MP
Sbjct: 501 ISLLSACGNAGLVSEGWMVFDTMIHEYSIAARIEHYAALVNLIGRHGQLDDALEVINSMP 560

Query: 513 MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARR 572
           + P+  +W   L AC   +N  +    AK L  +D  +S+ YVL+ N+ A  G W  A  
Sbjct: 561 IAPDRSVWGAFLGACTAKKNELLAHMAAKALSKIDPESSAPYVLIHNLHAHEGRWGSASV 620

Query: 573 VRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
           VR  M+++ + K PG SWI+L   VH F   D S    ++I+ +L
Sbjct: 621 VREEMEQQGIHKHPGYSWIDLHDKVHVFISGDTSHPLTQEIFSVL 665



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 202/428 (47%), Gaps = 72/428 (16%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE---SARELFDSMPIR 214
           N  ++   R   +  AR  F  M +RD+VS+N+++  Y +S N E   +AR LFD MP  
Sbjct: 65  NSFLAALARGRDVAAARAFFASMPVRDAVSWNTLLAAYSRSLNSEHLAAARRLFDEMP-- 122

Query: 215 ERNLISWNSVLNGYAQLKSGLQF-AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALF 273
           +R+ ++WN++L  Y  ++ GL   A ++F++MP+R++ SWN+M+ G    G+++ A  +F
Sbjct: 123 QRDAVTWNTLLGAY--VRRGLMVEAEKLFDEMPQRNVASWNTMVTGFFSAGQVNKALDMF 180

Query: 274 DKMPKRDVVSWANMIDG------------------------------------YAKLGRV 297
           D MP +D  S   ++ G                                    Y ++GRV
Sbjct: 181 DAMPVKDSASLGTLVSGFIKNGRLHEAEELLTKRLRVTDMDEAVDAYNTLIAAYGQVGRV 240

Query: 298 DIARRLFDEMPK--------------RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELY 343
             ARRLFD +P+              R+VV+ N+MM  Y+R G    A EIF+ M  +  
Sbjct: 241 SDARRLFDMIPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCSAREIFNEMPDK-- 298

Query: 344 LHPDDASLVIVLSAIAQLGHIDKGVAIHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENA 402
              D  S   +++   ++  +++   +   + + D  S N      +I  +++ G +E+A
Sbjct: 299 ---DLVSWNTMIAGYTKVSDMEEAEKLFWEMPDPDIVSWN-----LIIRGFTQKGDVEHA 350

Query: 403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
              F+++ +     WN MI+G   +G  + A +L  +M      PD  TF+ +L ACA  
Sbjct: 351 RGFFDRMPERGTISWNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHTFSSVLAACASL 410

Query: 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRT 522
            +++ G    +L+ +     P+      ++ +  R G +  A  + + MP + + V W  
Sbjct: 411 PMLRLGAQLHQLIEK--SFLPDTATSNALMTMYSRGGALTDAEAIFKQMP-QKDLVSWNA 467

Query: 523 LLSACRNY 530
           L+    ++
Sbjct: 468 LIGGYEHH 475



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/434 (24%), Positives = 205/434 (47%), Gaps = 31/434 (7%)

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQL--KSG 234
           FD +  R  V++NS +    +  ++ +AR  F SMP+R+   +SWN++L  Y++      
Sbjct: 53  FDALPARSVVTWNSFLAALARGRDVAAARAFFASMPVRD--AVSWNTLLAAYSRSLNSEH 110

Query: 235 LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKL 294
           L  A ++F++MP+RD ++WN++L   V+ G M +A+ LFD+MP+R+V SW  M+ G+   
Sbjct: 111 LAAARRLFDEMPQRDAVTWNTLLGAYVRRGLMVEAEKLFDEMPQRNVASWNTMVTGFFSA 170

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
           G+V+ A  +FD MP +D  +   ++ G+++NG   +A E+         +     +   +
Sbjct: 171 GQVNKALDMFDAMPVKDSASLGTLVSGFIKNGRLHEAEELLTKRLRVTDMDEAVDAYNTL 230

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQ----------FSLNGKHGVALIDMYSKCGSIENAIK 404
           ++A  Q+G +     +   + + Q          F+ N     +++  Y + G + +A +
Sbjct: 231 IAAYGQVGRVSDARRLFDMIPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCSARE 290

Query: 405 VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL 464
           +F ++ D  +  WN MI G       E A  L  EM     +PD +++  ++      G 
Sbjct: 291 IFNEMPDKDLVSWNTMIAGYTKVSDMEEAEKLFWEMP----DPDIVSWNLIIRGFTQKGD 346

Query: 465 VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM---PMEPNDVIWR 521
           V+     F+ M     +      +  M+    + GH + A  L   M      P+   + 
Sbjct: 347 VEHARGFFDRMPERGTIS-----WNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHTFS 401

Query: 522 TLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581
           ++L+AC +   L +G  + + +      ++++   L  M++  G   DA  +   M +++
Sbjct: 402 SVLAACASLPMLRLGAQLHQLIEKSFLPDTATSNALMTMYSRGGALTDAEAIFKQMPQKD 461

Query: 582 LKKLPGCSWIELEG 595
           L      SW  L G
Sbjct: 462 L-----VSWNALIG 470


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  305 bits (780), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 176/498 (35%), Positives = 280/498 (56%), Gaps = 20/498 (4%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISL---------YVRCGYLEFARQ 175
           +L++CS    ++    IHG L +    SD+F+ + L++L         +     L +A  
Sbjct: 18  LLQSCSSFSDLK---IIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYG 74

Query: 176 LFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRER---NLISWNSVLNGYAQLK 232
           +F ++   +   +N +I  +        A   +  M ++ R   + I++  ++    +++
Sbjct: 75  IFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQM-LKSRIWPDNITFPFLIKASTEME 133

Query: 233 S---GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMID 289
               G Q   QI     + D+   NS++H    CG +  A  +F +MP RDVVSW +M+ 
Sbjct: 134 CVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVA 193

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
           GY K G V+ AR +FDEMP R++   + M+ GY +N    KA+++F+ M+ E  +  ++ 
Sbjct: 194 GYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVV-ANET 252

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
            +V V+S+ A LG ++ G   H Y+ K   ++N   G AL+DMY +CG IE AI+VFE++
Sbjct: 253 VMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEEL 312

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
            D     W+++I GLA+HG    A     +M RL   P DIT T +L+AC+H GLV +GL
Sbjct: 313 PDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGL 372

Query: 470 LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRN 529
             +E M+R + +EP L+HYGC+VD+LGRAG +  A N I  MP++PN  I   LL AC+ 
Sbjct: 373 EIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKI 432

Query: 530 YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCS 589
           Y+N  V E V   LI +   +S  YVLLSN++A  G W     +R +MKE+ +KK PG S
Sbjct: 433 YKNTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWS 492

Query: 590 WIELEGVVHEFFVRDKSR 607
            IE++G +++F + D  +
Sbjct: 493 LIEIDGKINKFSMGDDQK 510



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 107/396 (27%), Positives = 211/396 (53%), Gaps = 15/396 (3%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           L LL+ C + +D+  IH  ++ T  I +  + ++L+A       +   +    + + Y  
Sbjct: 16  LALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGI 75

Query: 78  FREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
           F + ++P  F++N +I+ +S G +P +A   +  ML + +  D  +   ++KA + +  +
Sbjct: 76  FSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECV 135

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
             G Q H  + +  F +D++++N L+ +Y  CG +  A ++F +M  RD VS+ SM+ GY
Sbjct: 136 VVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGY 195

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN- 254
            K G +E ARE+FD MP   RNL +W+ ++NGYA+  +  + A  +FE M    +++   
Sbjct: 196 CKCGMVEDAREMFDEMP--HRNLFTWSIMINGYAK-NNCFEKAIDLFELMKREGVVANET 252

Query: 255 ---SMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEM 307
              S++  C   G ++  +   + + K     +++    ++D Y + G ++ A R+F+E+
Sbjct: 253 VMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEEL 312

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
           P +D ++ ++++ G   +G++ KA+  F  M   L   P D +L  VLSA +  G +DKG
Sbjct: 313 PDKDSLSWSSIIKGLAVHGHAHKAIHYFSQM-VRLGFSPRDITLTAVLSACSHGGLVDKG 371

Query: 368 VAIHRYLEKDQ-FSLNGKHGVALIDMYSKCGSIENA 402
           + I+  +++D       +H   ++DM  + G +  A
Sbjct: 372 LEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEA 407


>gi|226496045|ref|NP_001146017.1| uncharacterized protein LOC100279548 [Zea mays]
 gi|219885333|gb|ACL53041.1| unknown [Zea mays]
 gi|414872421|tpg|DAA50978.1| TPA: hypothetical protein ZEAMMB73_118572 [Zea mays]
          Length = 528

 Score =  305 bits (780), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 177/518 (34%), Positives = 289/518 (55%), Gaps = 15/518 (2%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL---GLIEEGLQIHG 143
           W   I+  +    P+ A+ ++   L +      F+ + VLK+  RL    ++     +H 
Sbjct: 14  WTLAIRAAADQGRPRRAIALYLASLRSSCRPCPFALAAVLKSVPRLPEHAVLPAAASLHA 73

Query: 144 LLRKVAFGSDLFLQNCLISLYVRC--GYLEFARQLFD----KMGIRDSVSYNSMIDGYVK 197
            L ++   S  +    L  LY      +   AR L D     +     VS NS++   ++
Sbjct: 74  HLLRLGLLSHPYPHAALSHLYSHLLPPHHNHARGLLDDAPTPLNRHSLVSSNSLLASLLR 133

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSM 256
           +G+I +AR +F++MP   R+++SWNS++ G A  K+G L  A ++F++MPE ++ SWN++
Sbjct: 134 AGDIPAARAMFEAMP--ARDVVSWNSMVAGLA--KAGHLDEAIEMFDQMPETNVASWNAL 189

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316
           + G +  G +  AQ LF++MP R+ VSW  MI GYAK G V  A  LFD M  +D+ A N
Sbjct: 190 VSGFMAQGHLAQAQELFERMPTRNNVSWITMISGYAKAGDVQAAANLFDRMGSKDLYAWN 249

Query: 317 AMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           AM+  Y +NG + +AL IF+ M +  +++ P++ +   V+SA +QLG +  G+ +  ++ 
Sbjct: 250 AMISCYAQNGCAREALGIFNRMLKPHIWVVPNEKTFSSVISACSQLGDLRFGLWVENFMG 309

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
                L+     AL+D+Y+K G ++ A  +F  +    V  ++AMI G  +HG    A  
Sbjct: 310 YVGVDLDDHLRTALVDLYTKSGRMDRAFDLFRGLRSRDVVSYSAMIVGCGMHGKLNEAVG 369

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           L  EM +  I+P+ +TF GLL+A +HAGL++E   CF  M   +++ P ++HY  MVDIL
Sbjct: 370 LFKEMSKARIDPNAVTFVGLLSAYSHAGLLEEARACFTSMTSRYRINPSMEHYTIMVDIL 429

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
           GR G +E A  L+  +P+ P+  +W  LL ACR + N+ +GE VA     ++   S  Y+
Sbjct: 430 GRCGKLEEAFQLVMQIPVCPDASVWGALLLACRLHNNIELGEVVASKCFELEPQESGYYI 489

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
           LL N++A    W+  + +R MM ER L K PG SW+ +
Sbjct: 490 LLGNIYAQAKKWDKVKGLRKMMAERGLSKTPGSSWVHV 527



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 118/244 (48%), Gaps = 19/244 (7%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV--DKFSASLVLKACSRLGLIEEGL 139
           KD + WNA+I  Y+     +EAL +F  ML   + V  ++ + S V+ ACS+LG +  GL
Sbjct: 243 KDLYAWNAMISCYAQNGCAREALGIFNRMLKPHIWVVPNEKTFSSVISACSQLGDLRFGL 302

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
            +   +  V    D  L+  L+ LY + G ++ A  LF  +  RD VSY++MI G    G
Sbjct: 303 WVENFMGYVGVDLDDHLRTALVDLYTKSGRMDRAFDLFRGLRSRDVVSYSAMIVGCGMHG 362

Query: 200 NIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
            +  A  LF  M     + N +++  +L+ Y+     L+ A   F  M  R  I+  SM 
Sbjct: 363 KLNEAVGLFKEMSKARIDPNAVTFVGLLSAYSH-AGLLEEARACFTSMTSRYRIN-PSME 420

Query: 258 HGCV------KCGKMDDAQALFDKMPK-RDVVSWANM-----IDGYAKLGRVDIARRLFD 305
           H  +      +CGK+++A  L  ++P   D   W  +     +    +LG V +A + F+
Sbjct: 421 HYTIMVDILGRCGKLEEAFQLVMQIPVCPDASVWGALLLACRLHNNIELGEV-VASKCFE 479

Query: 306 EMPK 309
             P+
Sbjct: 480 LEPQ 483


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  305 bits (780), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 191/607 (31%), Positives = 312/607 (51%), Gaps = 49/607 (8%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF--FK 74
           + R C  L+ +    Q+HA  +   F  +  + T  +  ++   C  L + A+ IF    
Sbjct: 283 VFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYA--KCGSLAD-AQRIFNSLP 339

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
            H+ +       +NAII          EAL  F L+L +G+  ++ S S    AC+ +  
Sbjct: 340 KHSLQ------CYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKG 393

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
             +G Q+H L  K    S++ + N ++ +Y +C  L  A  +FD+M  RD+VS+N++I  
Sbjct: 394 DLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAA 453

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN 254
           + ++GN E    LF SM +R R                              E D  ++ 
Sbjct: 454 HEQNGNEEETLNLFASM-LRLR-----------------------------MEPDQFTYG 483

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
           S+L  C     ++    + +++ K     D      +ID Y K G ++ A+++ D + ++
Sbjct: 484 SVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQ 543

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
            +V+ NA++ G+    +S  A   F  M  ++ + PD+ +  IVL A A L  +  G  I
Sbjct: 544 TMVSWNAIIAGFTLLKHSEDAHSFFYEM-LKMSVKPDNFTYAIVLDACANLASVGLGKQI 602

Query: 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
           H  + K +   +      L+DMYSKCG+++++  VFE+  +     WNAMI G A HGLG
Sbjct: 603 HGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICGYAQHGLG 662

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
           E A      M+  ++ P+  TF  +L ACAH G + +GL  F  M   + LEP+++HY C
Sbjct: 663 EEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSC 722

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           M+DI+GR+G I  A  LI++MP E + VIWRTLLS C+ + N+ + E     ++ ++  +
Sbjct: 723 MIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSICKIHGNIEIAEKATNAILQLEPED 782

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQV 610
           SS+ +LLSN++A  GMW     +R MM+   LKK PGCSWIE++  VH F V +K+  + 
Sbjct: 783 SSACILLSNIYADAGMWGKVSEMRKMMRYNKLKKEPGCSWIEVKDEVHAFLVGNKTHPRY 842

Query: 611 RDIYYML 617
            +IY +L
Sbjct: 843 EEIYKIL 849



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 138/530 (26%), Positives = 254/530 (47%), Gaps = 59/530 (11%)

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI 182
           S +++ CS    ++ G Q H  +    F  D+++ NCL+ +Y+RC +L +A ++F+KM  
Sbjct: 47  SHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKMSQ 106

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIF 242
           RD +SYN+MI GY  +G +  A E F   P  +R+++SWNS+L+G+ Q     + +  +F
Sbjct: 107 RDVISYNTMISGYADAGEMNLANEFFYDTP--KRDVVSWNSMLSGFLQ-NGECRKSIDVF 163

Query: 243 EKMPERDLISWNSMLHGCV--KCGKMDDA------QALFDKMP-KRDVVSWANMIDGYAK 293
             M   + + ++      V   C  ++D         L  +M   +DVV+ + ++D YAK
Sbjct: 164 LDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAK 223

Query: 294 LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI 353
             R+D + ++F E+P ++ V  +A++ G V+N   +  LE+F  MQ ++ +    +    
Sbjct: 224 CKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQ-KVGIGVSQSIYAS 282

Query: 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
           V  + A L  +  G  +H +  K  F  +   G A +DMY+KCGS+ +A ++F  +   S
Sbjct: 283 VFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHS 342

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA-----------HA 462
           +  +NA+I G   +  G  A      + +  +  ++I+ +G  +ACA           H+
Sbjct: 343 LQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHS 402

Query: 463 GLVKEGL---LCF--ELMRRIHKLEPELQHYGCMVDILGRA---------------GHIE 502
             VK  L   +C    ++    K E  L    CM D + R                G+ E
Sbjct: 403 LSVKSTLRSNICVANSILDMYGKCEA-LSEACCMFDEMERRDAVSWNAVIAAHEQNGNEE 461

Query: 503 AARNLIEDM---PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI----GMDSSNSSSYV 555
              NL   M    MEP+   + ++L AC + + LN G  +   +I    G+DS    + +
Sbjct: 462 ETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALI 521

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKK----LPGCSWIELEGVVHEFF 601
              +M+   GM  +A+++   ++++ +      + G + ++     H FF
Sbjct: 522 ---DMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFF 568



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 149/633 (23%), Positives = 269/633 (42%), Gaps = 123/633 (19%)

Query: 20  LLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           ++++C   N +    Q HARMI +GFI + +++  L+  +    C+ L  +A  +F K  
Sbjct: 49  IIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLR--CSHLN-YAYKVFEKM- 104

Query: 77  AFREKKDPFLWNAIIKTYSHGLD-----------PKEALV----MFCLMLDNG------- 114
               ++D   +N +I  Y+   +           PK  +V    M    L NG       
Sbjct: 105 ---SQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSID 161

Query: 115 ----------VSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLY 164
                     V  D+ + ++VLKACS L     G+Q+HGL+ ++ F  D+   + L+ +Y
Sbjct: 162 VFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMY 221

Query: 165 VRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP-----IRERNLI 219
            +C  L+ + ++F ++ +++ V ++++I G V++       ELF  M      + +    
Sbjct: 222 AKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYA 281

Query: 220 SWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR 279
           S      G + LK G Q      +     D+    + L    KCG + DAQ +F+ +PK 
Sbjct: 282 SVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKH 341

Query: 280 DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQ 339
            +  +                               NA++ G VRN    +AL+ F  + 
Sbjct: 342 SLQCY-------------------------------NAIIVGCVRNEKGFEALQFF-QLL 369

Query: 340 CELYLHPDDASLVIVLSAIAQL-GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS 398
            +  L  ++ SL    SA A + G +D G  +H    K     N     +++DMY KC +
Sbjct: 370 LKSGLGFNEISLSGAFSACASIKGDLD-GRQLHSLSVKSTLRSNICVANSILDMYGKCEA 428

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
           +  A  +F+++E      WNA+I     +G  E   +L   M RL +EPD  T+  +L A
Sbjct: 429 LSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKA 488

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHY--GCMVDILGRAGHIEAARNL---IED--- 510
           C+    +  G+   E+  RI K    L  +  G ++D+  + G IE A+ +   IE    
Sbjct: 489 CSSQQALNSGM---EIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTM 545

Query: 511 ----------------------------MPMEPNDVIWRTLLSACRNYENLNVGEPVAKH 542
                                       M ++P++  +  +L AC N  ++ +G+ +   
Sbjct: 546 VSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQ 605

Query: 543 LIGMDSSNSSSYV--LLSNMFAGLGMWNDARRV 573
           +I ++  +S  Y+   L +M++  G   D+  V
Sbjct: 606 IIKLE-LHSDVYITSTLVDMYSKCGNMQDSALV 637


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  305 bits (780), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 185/641 (28%), Positives = 326/641 (50%), Gaps = 53/641 (8%)

Query: 26  TLNDVNQIHARMITTGFIKNTHLTTKLVASFSS--SPCTPLTEFARYIFFKYHAFREKKD 83
           +L+   Q HA ++      +T LTT L++ +++  S  TP           +        
Sbjct: 15  SLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTL----- 69

Query: 84  PFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHG 143
            F ++++I  ++        L  F  +    +  D F     +K+C+ L  ++ G Q+H 
Sbjct: 70  -FSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHA 128

Query: 144 LLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIES 203
                 F +D  + + L  +Y++C  +  AR+LFD+M  RD V +++MI GY + G +E 
Sbjct: 129 FAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEE 188

Query: 204 ARELFDSMPIR--ERNLISWNSVLNGYAQ------------------------------- 230
           A+ELF  M     E NL+SWN +L G+                                 
Sbjct: 189 AKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLP 248

Query: 231 -------LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS 283
                  +  G Q    + ++    D    ++ML    KCG + +   +FD++ + ++ S
Sbjct: 249 AVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGS 308

Query: 284 WANMIDGYAKLGRVDIARRLF----DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQ 339
               + G ++ G VD A  +F    D+  + +VV   +++    +NG  ++ALE+F +MQ
Sbjct: 309 LNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQ 368

Query: 340 CELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSI 399
               + P+  ++  ++ A   +  +  G  IH +  +     +   G ALIDMY+KCG I
Sbjct: 369 A-YGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRI 427

Query: 400 ENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
           + A + F+++   ++  WNA++ G A+HG  +   ++   M +   +PD +TFT +L+AC
Sbjct: 428 QLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSAC 487

Query: 460 AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI 519
           A  GL +EG  C+  M   H +EP+++HY C+V +L R G +E A ++I++MP EP+  +
Sbjct: 488 AQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACV 547

Query: 520 WRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579
           W  LLS+CR + NL++GE  A+ L  ++ +N  +Y+LLSN++A  G+W++  R+R +MK 
Sbjct: 548 WGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKS 607

Query: 580 RNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           + L+K PG SWIE+   VH     D+S  Q++DI   LD +
Sbjct: 608 KGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKL 648


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 178/556 (32%), Positives = 292/556 (52%), Gaps = 39/556 (7%)

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL 132
           FK      +++   W  +I          EA+ +F  M+ +G   D+F+ S V+ AC+ +
Sbjct: 225 FKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANM 284

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
            L+  G Q+H    +     D  +  CLI++Y +C                         
Sbjct: 285 ELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSV----------------------- 321

Query: 193 DGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI- 251
                 G++ +AR++FD   I + N+ SW +++ GY Q     + A  +F  M    +I 
Sbjct: 322 -----DGSMCAARKIFDQ--ILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIP 374

Query: 252 ---SWNSMLHGCVKCGKMDDAQALFD---KMPKRDVVSWAN-MIDGYAKLGRVDIARRLF 304
              +++S L  C     +   + +F    K+    V   AN +I  YA+ GR+D AR+ F
Sbjct: 375 NHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAF 434

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
           D + ++++++ N ++  Y +N  S +ALE+F+ ++ +  +     +   +LS  A +G I
Sbjct: 435 DILFEKNLISYNTVIDAYAKNLNSEEALELFNEIE-DQGMGASAFTFASLLSGAASIGTI 493

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
            KG  IH  + K    LN     ALI MYS+CG+IE+A +VFE +ED +V  W ++I G 
Sbjct: 494 GKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGF 553

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
           A HG    A +L  +M    + P+ +T+  +L+AC+H GLV EG   F+ M   H + P 
Sbjct: 554 AKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPR 613

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
           ++HY CMVDILGR+G +  A   I  MP + + ++WRT L ACR + NL +G+  AK +I
Sbjct: 614 MEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMII 673

Query: 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
             +  + ++Y+LLSN++A    W++   +R  MKE+NL K  GCSW+E+E  VH+F+V D
Sbjct: 674 EQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGD 733

Query: 605 KSRLQVRDIYYMLDNM 620
            S  +  +IY  L N+
Sbjct: 734 TSHPKAAEIYDELQNL 749



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 141/542 (26%), Positives = 238/542 (43%), Gaps = 81/542 (14%)

Query: 154 LFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPI 213
           LFL+ C+ +     G L   +     + + DSV+ NS+I  Y K G  E A  +F  M  
Sbjct: 71  LFLKKCIRTRSFDIGTLVHEKLTQSDLQL-DSVTLNSLISLYSKCGQWEKATSIFQLMG- 128

Query: 214 RERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER----DLISWNSMLHGCVKCGKMDDA 269
             R+LISW+++++ +A    G + A   F  M E     +   + +    C     +   
Sbjct: 129 SSRDLISWSAMVSCFANNNMGFR-ALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVG 187

Query: 270 QALFDKMPK-----RDVVSWANMIDGYAKLGRVDI--ARRLFDEMPKRDVVACNAMMGGY 322
            ++F  + K      DV     +ID + K GR D+  A ++F++MP+R+ V    M+   
Sbjct: 188 DSIFGFVVKTGYLQSDVCVGCGLIDMFVK-GRGDLVSAFKVFEKMPERNAVTWTLMITRL 246

Query: 323 VRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN 382
           ++ GY+ +A+++F  M    Y  PD  +L  V+SA A +  +  G  +H    +   +L+
Sbjct: 247 MQFGYAGEAIDLFLEMILSGY-EPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLD 305

Query: 383 GKHGVALIDMYSKC---GSIENAIKVFEQIEDGSVDHWNAMING-LAIHGLGELAFDLLM 438
              G  LI+MY+KC   GS+  A K+F+QI D +V  W AMI G +   G  E A DL  
Sbjct: 306 RCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFR 365

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC----MVDI 494
            M    + P+  TF+  L ACA+   ++ G   F      H ++       C    ++ +
Sbjct: 366 GMILTHVIPNHFTFSSTLKACANLAALRIGEQVF-----THAVKLGFSSVNCVANSLISM 420

Query: 495 LGRAGHIEAAR----------------------------------NLIEDMPMEPNDVIW 520
             R+G I+ AR                                  N IED  M  +   +
Sbjct: 421 YARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTF 480

Query: 521 RTLLSACRNYENLNVGEPVAKHLI--GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578
            +LLS   +   +  GE +   +I  G+  + S    L+S M++  G    A +V   M+
Sbjct: 481 ASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALIS-MYSRCGNIESAFQVFEDME 539

Query: 579 ERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY-MLD-----NMWTPDSVATSCTH 632
           +RN+      SW      +   F +     Q  ++++ ML+     N+ T  +V ++C+H
Sbjct: 540 DRNV-----ISWTS----IITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSH 590

Query: 633 YG 634
            G
Sbjct: 591 VG 592



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 128/501 (25%), Positives = 214/501 (42%), Gaps = 89/501 (17%)

Query: 110 MLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY 169
           M+  G   D  + SL LK C R    + G  +H  L +     D    N LISLY +CG 
Sbjct: 57  MVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQ 116

Query: 170 LEFARQLFDKMG-IRDSVSYNSMIDGYVKSG--------------NIESARELFDSMPIR 214
            E A  +F  MG  RD +S+++M+  +  +               N     E   +   R
Sbjct: 117 WEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATR 176

Query: 215 ERNLISWNS---------VLNGYAQL---------------KSGLQFAWQIFEKMPERDL 250
             +   + S         V  GY Q                +  L  A+++FEKMPER+ 
Sbjct: 177 ACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNA 236

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKM------PKRDVVS-----WANM------------ 287
           ++W  M+   ++ G   +A  LF +M      P R  +S      ANM            
Sbjct: 237 VTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQ 296

Query: 288 ----------------IDGYAKL---GRVDIARRLFDEMPKRDVVACNAMMGGYV-RNGY 327
                           I+ YAK    G +  AR++FD++   +V +  AM+ GYV + GY
Sbjct: 297 AIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGY 356

Query: 328 SMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV 387
             +AL++F  M    ++ P+  +    L A A L  +  G  +  +  K  FS       
Sbjct: 357 DEEALDLFRGMILT-HVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVAN 415

Query: 388 ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP 447
           +LI MY++ G I++A K F+ + + ++  +N +I+  A +   E A +L  E+E   +  
Sbjct: 416 SLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGA 475

Query: 448 DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC--MVDILGRAGHIEAAR 505
              TF  LL+  A  G + +G    ++  R+ K   +L    C  ++ +  R G+IE+A 
Sbjct: 476 SAFTFASLLSGAASIGTIGKGE---QIHARVIKSGLKLNQSVCNALISMYSRCGNIESAF 532

Query: 506 NLIEDMPMEPNDVIWRTLLSA 526
            + EDM  + N + W ++++ 
Sbjct: 533 QVFEDME-DRNVISWTSIITG 552



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 171/380 (45%), Gaps = 48/380 (12%)

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV----VSWANMIDGYAKLGRVDIARRLF 304
           DL +++  L  C++    D    + +K+ + D+    V+  ++I  Y+K G+ + A  +F
Sbjct: 65  DLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIF 124

Query: 305 DEM-PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
             M   RD+++ +AM+  +  N    +AL  F +M    Y +P++        A +    
Sbjct: 125 QLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGY-YPNEYCFAAATRACSTAEF 183

Query: 364 IDKGVAIHRYLEKDQF-SLNGKHGVALIDMYSKC-GSIENAIKVFEQIEDGSVDHWNAMI 421
           +  G +I  ++ K  +   +   G  LIDM+ K  G + +A KVFE++ + +   W  MI
Sbjct: 184 VSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMI 243

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA-----------HAGLVKEGLL 470
             L   G    A DL +EM     EPD  T +G+++ACA           H+  ++ GL 
Sbjct: 244 TRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLT 303

Query: 471 -------CFELM-------------RRIHK--LEPELQHYGCMVD-ILGRAGHIEAARNL 507
                  C   M             R+I    L+  +  +  M+   + + G+ E A +L
Sbjct: 304 LDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDL 363

Query: 508 IEDMPME---PNDVIWRTLLSACRNYENLNVGEPVAKHLI--GMDSSNSSSYVLLSNMFA 562
              M +    PN   + + L AC N   L +GE V  H +  G  S N  +  L+S M+A
Sbjct: 364 FRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLIS-MYA 422

Query: 563 GLGMWNDARRVRSMMKERNL 582
             G  +DAR+   ++ E+NL
Sbjct: 423 RSGRIDDARKAFDILFEKNL 442



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 159/374 (42%), Gaps = 64/374 (17%)

Query: 21  LRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           L+ C  L  +    Q+    +  GF     +   L++ ++ S        A  I F+   
Sbjct: 383 LKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFE--- 439

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
               K+   +N +I  Y+  L+ +EAL +F  + D G+    F+ + +L   + +G I +
Sbjct: 440 ----KNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGK 495

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G QIH  + K     +  + N LIS+Y RCG +E A Q+F+ M  R+ +S+ S+I G+ K
Sbjct: 496 GEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAK 555

Query: 198 SGNIESARELFDSM---PIRERNLISWNSVLN----------GYAQLKS----------- 233
            G    A ELF  M    +R  NL+++ +VL+          G+   KS           
Sbjct: 556 HGFATQALELFHKMLEEGVRP-NLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRM 614

Query: 234 --------------GLQFAWQIFEKMPER-DLISWNSMLHGCVKCGKMD----DAQALFD 274
                          L  A Q    MP + D + W + L  C   G ++     A+ + +
Sbjct: 615 EHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIE 674

Query: 275 KMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV---AC------NAMMGGYVRN 325
           + P  D  ++  + + YA   + D    +   M +++++    C      N +   YV +
Sbjct: 675 QEP-HDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGD 733

Query: 326 GYSMKALEIFDNMQ 339
               KA EI+D +Q
Sbjct: 734 TSHPKAAEIYDELQ 747



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 94/207 (45%), Gaps = 8/207 (3%)

Query: 323 VRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN 382
           + NG   KA+   ++M      HPD  +  + L    +    D G  +H  L +    L+
Sbjct: 42  INNGRLHKAISTLEHM-VHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLD 100

Query: 383 GKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD--HWNAMINGLAIHGLGELAFDLLMEM 440
                +LI +YSKCG  E A  +F Q+   S D   W+AM++  A + +G  A    ++M
Sbjct: 101 SVTLNSLISLYSKCGQWEKATSIF-QLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDM 159

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC-MVDILGRA- 498
                 P++  F     AC+ A  V  G   F  + +   L+ ++   GC ++D+  +  
Sbjct: 160 IENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVC-VGCGLIDMFVKGR 218

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLS 525
           G + +A  + E MP E N V W  +++
Sbjct: 219 GDLVSAFKVFEKMP-ERNAVTWTLMIT 244


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 205/681 (30%), Positives = 333/681 (48%), Gaps = 90/681 (13%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+ C  + D+    Q+H  ++ +GF  +  +   LV  ++   C    +  R       
Sbjct: 163 VLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAK--CDEFLDSKRL------ 214

Query: 77  AFRE--KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
            F E  +++   WNA+   Y       EA+ +F  M+ +G+  ++FS S ++ AC+ L  
Sbjct: 215 -FDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRD 273

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
              G  IHG L K+ +  D F  N L+ +Y + G L  A  +F+K+   D VS+N++I G
Sbjct: 274 SSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAG 333

Query: 195 YVKSGNIESARELFDSMPIRE--RNLISWNSVLNGYA---------QLKSGL-------- 235
            V   + E A EL   M       N+ + +S L   A         QL S L        
Sbjct: 334 CVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESD 393

Query: 236 -----------------QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK 278
                            + A   F  +PE+DLI+WN+++ G  +  +  +A +LF +M K
Sbjct: 394 LFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHK 453

Query: 279 R---------------------------------------DVVSWANMIDGYAKLGRVDI 299
                                                   D+    ++ID Y K   V+ 
Sbjct: 454 EGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVED 513

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           A R+F+E    D+V+  +M+  Y + G   +AL++F  MQ ++ L PD      +L+A A
Sbjct: 514 AERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQ-DMELKPDRFVCSSLLNACA 572

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
            L   ++G  +H ++ K  F L+   G +L++MY+KCGSI++A + F ++ +  +  W+A
Sbjct: 573 NLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSA 632

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           MI GLA HG G  A  L  +M +  + P+ IT   +L AC HAGLV E  L FE M  + 
Sbjct: 633 MIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELF 692

Query: 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPV 539
             +P  +HY CM+D+LGRAG I  A  L+  MP E N  +W  LL A R ++++ +G   
Sbjct: 693 GFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRA 752

Query: 540 AKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHE 599
           A+ L  ++   S ++VLL+N++A  G W +   VR +M++  +KK PG SWIE++  V+ 
Sbjct: 753 AEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYT 812

Query: 600 FFVRDKSRLQVRDIYYMLDNM 620
           F V D+S  + ++IY  LD +
Sbjct: 813 FLVGDRSHYRSQEIYAKLDEL 833



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 142/561 (25%), Positives = 250/561 (44%), Gaps = 108/561 (19%)

Query: 20  LLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           LL +C   K+L    QIHA +  +G   +  +   L+  +S           R   +   
Sbjct: 62  LLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSK---------CRNFGYARK 112

Query: 77  AFREKKDPFL--WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
              E  +P L  W+A+I  Y+       AL+ F  M   GV  ++F+ S VLKACS +  
Sbjct: 113 LVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKD 172

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           +  G Q+HG++    F  D+F+ N L+ +Y +C     +++LFD++  R+ VS+N++   
Sbjct: 173 LRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSC 232

Query: 195 YVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSG------------LQFAW- 239
           YV+      A  LF  M +   + N  S +S++N    L+              L + W 
Sbjct: 233 YVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWD 292

Query: 240 ---------------------QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK 278
                                 +FEK+ + D++SWN+++ GCV     + A  L  +M +
Sbjct: 293 PFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKR 352

Query: 279 ---------------------------------------RDVVSWANMIDGYAKLGRVDI 299
                                                   D+     ++D Y+K   ++ 
Sbjct: 353 SGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLED 412

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE-LYLHPDDASLVIVLSAI 358
           AR  F+ +P++D++A NA++ GY +    M+AL +F  M  E +  +    S ++  +A 
Sbjct: 413 ARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAG 472

Query: 359 AQLGHIDK---GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
            Q+ H+ +   G+++      D + +N     +LID Y KC  +E+A ++FE+   G + 
Sbjct: 473 LQVVHVCRQVHGLSVKSGFHSDIYVVN-----SLIDSYGKCSHVEDAERIFEECTIGDLV 527

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            + +MI   A +G GE A  L +EM+ + ++PD    + LLNACA+       L  FE  
Sbjct: 528 SFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACAN-------LSAFEQG 580

Query: 476 RRIHKLEPELQHYGCMVDILG 496
           +++H     +  YG ++DI  
Sbjct: 581 KQLH---VHILKYGFVLDIFA 598



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 142/499 (28%), Positives = 234/499 (46%), Gaps = 71/499 (14%)

Query: 99  DPKEALVMFCLMLDNG-VSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQ 157
           DP+   ++   ++D G  +    S S +L  C     +  GLQIH  + K     D  ++
Sbjct: 37  DPQTTAILN--LIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIR 94

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--E 215
           N LI+LY +C    +AR+L D+    D VS++++I GY ++G    A   F  M +   +
Sbjct: 95  NHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVK 154

Query: 216 RNLISWNSVLNGYA---QLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
            N  +++SVL   +    L+ G Q    +     E D+   N+++    KC +  D++ L
Sbjct: 155 CNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRL 214

Query: 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
           FD++P+R+VVSW                               NA+   YV+  +  +A+
Sbjct: 215 FDEIPERNVVSW-------------------------------NALFSCYVQIDFCGEAV 243

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK-----DQFSLNGKHGV 387
            +F  M     + P++ SL  +++A   L    +G  IH YL K     D FS N     
Sbjct: 244 GLFYEMVLS-GIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSAN----- 297

Query: 388 ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP 447
           AL+DMY+K G + +AI VFE+I+   +  WNA+I G  +H   E A +LL +M+R  I P
Sbjct: 298 ALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICP 357

Query: 448 DDITFTGLLNACAHAGLVKEGLLCFELMRRIHK------LEPELQHYGCMVDILGRAGHI 501
           +  T +  L ACA  GL        EL R++H       +E +L     +VD+  +   +
Sbjct: 358 NIFTLSSALKACAGMGLK-------ELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLL 410

Query: 502 EAARNLIEDMPMEPNDVIWRTLLSACRNY----ENLNVGEPVAKHLIGMDSSNSSSYVLL 557
           E AR     +P E + + W  ++S    Y    E L++   + K  IG + +  S+ +L 
Sbjct: 411 EDARMAFNLLP-EKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLST-ILK 468

Query: 558 SNMFAGLGMWNDARRVRSM 576
           S   AGL + +  R+V  +
Sbjct: 469 ST--AGLQVVHVCRQVHGL 485


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 191/642 (29%), Positives = 318/642 (49%), Gaps = 104/642 (16%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           KD F WN++I   +   +P+ AL  F  M  + V  + F+   +LKAC+ L  +   LQ+
Sbjct: 16  KDTFHWNSLIAKNA-TQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQV 74

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM--GIRDSVSYNSMIDGYVKSG 199
           H  L ++   +D F    L+  Y +CG+  +A Q+FD+M  G  D VS+ ++I  Y  +G
Sbjct: 75  HAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNG 134

Query: 200 NIESARELFDSMP---------------IRERNLISWNSVLNGYAQLKSG---------- 234
            ++ A   F  M                +    L+S  +V  G   L+ G          
Sbjct: 135 CVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKY 194

Query: 235 ---------------------LQFAWQIFEKMP--ERDLISWNSMLHGCVKCGKMDDAQA 271
                                +  AW++F  +P  +RD++SWNS++ G    G+ + A  
Sbjct: 195 GFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALR 254

Query: 272 LFDKM---------PKR-------------------------------------DVVSWA 285
            F+ M         P R                                     DVV   
Sbjct: 255 TFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLT 314

Query: 286 NMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE---- 341
            ++D +A+ G + +AR +FD +  ++VV  +AM+ GY +     +AL +F  M  E    
Sbjct: 315 ALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMV 374

Query: 342 -LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE 400
            + + P+  +LV V++A ++LG       IH+Y        + +   ALIDM +KCG IE
Sbjct: 375 GVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIE 434

Query: 401 NAIKVFEQIEDG--SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
           +  +VF ++++   +V  W++MI    IHG G+ A +L  EM     EP++IT+  +L+A
Sbjct: 435 HGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSA 494

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
           C+HAGLV++G  CF  M + + + P  +HY C+VD+LGRAGH++ A N+I +MP++ +  
Sbjct: 495 CSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLA 554

Query: 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578
           +W +LL+AC  + N  +GE V K ++ +DS++   +VLL+NM+   G W+D  R+R  ++
Sbjct: 555 LWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELR 614

Query: 579 ERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
              L+K+PG S+IE+   V+ F   D+S  +   IY  LD +
Sbjct: 615 RSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGL 656



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 8/156 (5%)

Query: 30  VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNA 89
            + IH   + TG  ++  + + L+     + C  + E  R +F +       +    W++
Sbjct: 401 ASMIHKYAVATGLDQDARIASALIDM--CAKCGDI-EHGRQVFSEMD--ESTRTVVSWSS 455

Query: 90  IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA 149
           +I       + K AL +F  M   G   ++ +   VL ACS  GL+E+G      + K  
Sbjct: 456 MIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEK-D 514

Query: 150 FGSDLFLQN--CLISLYVRCGYLEFARQLFDKMGIR 183
           +G     ++  CL+ L  R G+L+ A  +   M I+
Sbjct: 515 YGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIK 550


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 178/516 (34%), Positives = 280/516 (54%), Gaps = 24/516 (4%)

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRC-----GYLEFARQLFDKMGI 182
           ACS +  ++   Q H LL ++   ++    + +  ++  C     G + +A +LF  +  
Sbjct: 11  ACSSMAEVK---QQHSLLLRLGLSTN---NHAMSRIFTFCSLSKHGDINYALKLFTTLPN 64

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSMPIRE---RNLISWNSVLNGYAQLKSGLQFAW 239
            D+  YN++   +       S   LF S  ++     N  ++ S++      +   Q   
Sbjct: 65  PDTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACKLEEEAKQLHA 124

Query: 240 QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDI 299
            + +     D  + N+++H     G +DDA+ +F  M   +VVSW +++ GY++ G VD 
Sbjct: 125 HVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDE 184

Query: 300 ARRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
           A R+F+ MP K++ V+ NAM+  +V+     +A  +F  M+ E  +  D      +LSA 
Sbjct: 185 AFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSAC 244

Query: 359 AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWN 418
             +G +++G+ IH+Y+EK    L+ K    +IDMY KCG ++ A  VF  ++   V  WN
Sbjct: 245 TGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWN 304

Query: 419 AMINGLAIHGLGELAFDLLMEMERLS-IEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
            MI G A+HG GE A  L  EME  + + PD ITF  +L ACAH+GLV+EG   F  M  
Sbjct: 305 CMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVD 364

Query: 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537
           +H ++P  +HYGCMVD+L RAG +E A+ +I++MPM P+  +   LL ACR + NL +GE
Sbjct: 365 VHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHGNLELGE 424

Query: 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVV 597
            V   +I +D  NS  YV+L NM+A  G W     VR +M +R +KK PG S IE+EGVV
Sbjct: 425 EVGNRVIELDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFSMIEMEGVV 484

Query: 598 HEFFV--RDKSRLQV--RDIYYMLDNM----WTPDS 625
           +EF    RD    +     IY ML+++    + PD+
Sbjct: 485 NEFVAGGRDHPLAEAIYAKIYEMLESIRVVGFVPDT 520



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 175/429 (40%), Gaps = 102/429 (23%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVA---SFSS-----------------S 59
           L+R CK   +  Q+HA ++  GF  +T+    L+    +F S                 S
Sbjct: 109 LIRACKLEEEAKQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVS 168

Query: 60  PCTPLTEFARY-----IFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLM-LDN 113
             + ++ ++++      F  +     KK+   WNA+I  +  G   +EA  +F  M ++ 
Sbjct: 169 WTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEK 228

Query: 114 GVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFA 173
            + +D+F A+ +L AC+ +G +E+G+ IH  + K     D  L   +I +Y +CG L+ A
Sbjct: 229 KMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKA 288

Query: 174 RQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKS 233
             +F  + ++   S+N MI G+   G  E A  LF  M                      
Sbjct: 289 FHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEE-------------------- 328

Query: 234 GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM-------PKRDVVSWAN 286
                    E M   D I++ ++L  C   G +++    F  M       P ++   +  
Sbjct: 329 ---------EAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKE--HYGC 377

Query: 287 MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP 346
           M+D  A+ GR++ A+++ DEMP                                   + P
Sbjct: 378 MVDLLARAGRLEEAKKVIDEMP-----------------------------------MSP 402

Query: 347 DDASLVIVLSAIAQLGHIDKGVAI-HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKV 405
           D A L  +L A    G+++ G  + +R +E D    N    V L +MY+ CG  E    V
Sbjct: 403 DAAVLGALLGACRIHGNLELGEEVGNRVIELD--PENSGRYVILGNMYASCGKWEQVAGV 460

Query: 406 FEQIEDGSV 414
            + ++D  V
Sbjct: 461 RKLMDDRGV 469


>gi|255569325|ref|XP_002525630.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535066|gb|EEF36748.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 765

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 181/478 (37%), Positives = 269/478 (56%), Gaps = 19/478 (3%)

Query: 9   QPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFA 68
           +P  S   TL L+ +C  L  + ++HA ++ +G   + +  +KL +  + S  + L ++A
Sbjct: 26  RPVTSHSQTLSLIDQCTNLKHLKELHATILRSGLFFHPYNASKLFSVAALSSFSSL-DYA 84

Query: 69  RYIFFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLML-DNGVSVDKFSASLV 125
           R +F       E   P  + WN +I+ ++   +P  +L++F  ML D+    +KF+   V
Sbjct: 85  RKVF------EEISQPNLYTWNTLIRAFASSPEPIHSLLIFIRMLYDSPDFPNKFTFPFV 138

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           +KA + +  +     IHG+  K + GSDLF+ N LI  Y  CG L+ A  +F K+  +D 
Sbjct: 139 IKAAAGVASLPFSQAIHGMAIKASLGSDLFILNSLIHCYASCGDLDSAYSVFVKIEEKDV 198

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFE 243
           VS+NSMI G+V  G  + A ELF  M       N ++   VL+  A+ K  L+F  ++  
Sbjct: 199 VSWNSMIKGFVLGGCPDKALELFQLMKAENVRPNDVTMVGVLSACAK-KMDLEFGRRVCH 257

Query: 244 KMPERD-----LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVD 298
            + ER+     L   N+ML   VK G ++DA+ LFDKM ++D+ SW  MIDGYAK    D
Sbjct: 258 YI-ERNGINVNLTVSNAMLDMYVKNGSLEDARRLFDKMEEKDIFSWTTMIDGYAKRRDFD 316

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
            AR +FD MP++D+ A N ++  Y ++G   +AL IF  +Q      PD+ +LV  LSA 
Sbjct: 317 AARSVFDAMPRQDISAWNVLISAYEQDGKPKEALAIFHELQLSKTAKPDEVTLVSTLSAC 376

Query: 359 AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWN 418
           AQLG ID G  IH Y++K    LN     +LIDMYSKCG +E A+ +F  ++   V  W+
Sbjct: 377 AQLGAIDIGGWIHVYIKKQDIKLNCHLTTSLIDMYSKCGEVEKALDIFYSVDRRDVFVWS 436

Query: 419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           AMI GLA+HG G  A DL  EM+   + P+ +TFT LL AC+H GLV EG + F  M 
Sbjct: 437 AMIAGLAMHGRGRAAIDLFFEMQETKVRPNAVTFTNLLCACSHTGLVNEGRMFFNQME 494



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 92/412 (22%), Positives = 182/412 (44%), Gaps = 78/412 (18%)

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQ----LKSGLQFAWQIFEKMPERDLISWN 254
            +++ AR++F+   I + NL +WN+++  +A     + S L F   +++     +  ++ 
Sbjct: 79  SSLDYARKVFEE--ISQPNLYTWNTLIRAFASSPEPIHSLLIFIRMLYDSPDFPNKFTFP 136

Query: 255 SMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
            ++        +  +QA+     K     D+    ++I  YA  G +D A  +F ++ ++
Sbjct: 137 FVIKAAAGVASLPFSQAIHGMAIKASLGSDLFILNSLIHCYASCGDLDSAYSVFVKIEEK 196

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
           DVV+ N+M+ G+V  G   KALE+F  M+ E  + P+D ++V VLSA A+   ++ G  +
Sbjct: 197 DVVSWNSMIKGFVLGGCPDKALELFQLMKAE-NVRPNDVTMVGVLSACAKKMDLEFGRRV 255

Query: 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
             Y+E++  ++N     A++DMY K GS+E+A ++F+++E+  +  W  MI+G A     
Sbjct: 256 CHYIERNGINVNLTVSNAMLDMYVKNGSLEDARRLFDKMEEKDIFSWTTMIDGYAKRRDF 315

Query: 431 ELAFDLLMEMERLSI--------------------------------EPDDITFTGLLNA 458
           + A  +   M R  I                                +PD++T    L+A
Sbjct: 316 DAARSVFDAMPRQDISAWNVLISAYEQDGKPKEALAIFHELQLSKTAKPDEVTLVSTLSA 375

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNL----------- 507
           CA  G +  G      +++   ++        ++D+  + G +E A ++           
Sbjct: 376 CAQLGAIDIGGWIHVYIKK-QDIKLNCHLTTSLIDMYSKCGEVEKALDIFYSVDRRDVFV 434

Query: 508 -----------------------IEDMPMEPNDVIWRTLLSACRNYENLNVG 536
                                  +++  + PN V +  LL AC +   +N G
Sbjct: 435 WSAMIAGLAMHGRGRAAIDLFFEMQETKVRPNAVTFTNLLCACSHTGLVNEG 486



 Score = 38.9 bits (89), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 10/133 (7%)

Query: 21  LRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           L  C  L  ++    IH  +       N HLTT L+  +S   C  + E A  IF+    
Sbjct: 373 LSACAQLGAIDIGGWIHVYIKKQDIKLNCHLTTSLIDMYSK--CGEV-EKALDIFYSV-- 427

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
             +++D F+W+A+I   +     + A+ +F  M +  V  +  + + +L ACS  GL+ E
Sbjct: 428 --DRRDVFVWSAMIAGLAMHGRGRAAIDLFFEMQETKVRPNAVTFTNLLCACSHTGLVNE 485

Query: 138 GLQIHGLLRKVAF 150
           G      +    F
Sbjct: 486 GRMFFNQMESSTF 498


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 191/611 (31%), Positives = 307/611 (50%), Gaps = 28/611 (4%)

Query: 25  KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKD- 83
           K+L+   Q+H  +I+ GF ++  +  KLV  +        T F   +    H   E  + 
Sbjct: 107 KSLSQGKQLHTLIISLGFEQHPIIVPKLVTFY--------TNFD--LLADAHTITENSNI 156

Query: 84  --PFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
             P  WN +I +Y       EAL  +  M   G+  DKF+   VLKAC     I  G ++
Sbjct: 157 LHPLPWNLLISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKL 216

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H  +     G +LF+ N L+S+Y + G L  AR LF+ M  RD VS+N+MI GY   G  
Sbjct: 217 HASINASCLGWNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMW 276

Query: 202 ESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE--------RDLI 251
           + A ELF  M +   E N+I+WN++  G  Q     + A ++   M            +I
Sbjct: 277 KEAFELFGKMRVEGIELNIITWNTIAGGCVQ-SGNFEEALELLSHMRSYGIDMDSVATII 335

Query: 252 SWNSMLH-GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
              +  H G +K G+     A+       D V  A +I  Y++   +  A  LF     +
Sbjct: 336 GLGACSHIGAIKLGREIHGSAIRSFYDGVDNVKNA-LITMYSRCKYLRHAYNLFQSTRTK 394

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
           +++  N+M+ GY     S +A  +F  M     + P+  ++  +L   A++ ++  G   
Sbjct: 395 NIITWNSMLSGYTHMDRSEEASFLFREMLLS-GIEPNYVTIASILPLCARVANLQHGKEF 453

Query: 371 HRY-LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429
           H Y L +  F        +L+DMY++ G +  A ++F+ I       + ++I G  I G 
Sbjct: 454 HCYILRRAGFKDYLLLWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGE 513

Query: 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489
           G  A  L  EM++  I+PD +T   +L+AC+H+GLV EG+  FELM   + + P L+H+ 
Sbjct: 514 GREALKLFDEMKKRHIKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFA 573

Query: 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549
           CMVD+ GRAG +  A+ +I  MP  P+  +W TLL ACR + N  +GE  A+ L+ M   
Sbjct: 574 CMVDLFGRAGLLHKAKEMITRMPYRPSSAMWATLLGACRIHGNAEIGEWAAEKLLEMRPE 633

Query: 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQ 609
           NS  YVL++NM+A  G W+   +VR+ M++  ++K PGC+W+++      F V D S+  
Sbjct: 634 NSGYYVLIANMYAAAGCWSKLAKVRTYMRDLGVRKAPGCAWVDVGSGFFPFLVDDTSKPH 693

Query: 610 VRDIYYMLDNM 620
           V  +Y +L+ +
Sbjct: 694 VNKLYPLLEGL 704


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 201/683 (29%), Positives = 326/683 (47%), Gaps = 92/683 (13%)

Query: 16  STLLLLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           S  ++L+ C  L + +   Q+H  ++  GF  +    + L+  ++   C  L +      
Sbjct: 183 SLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAK--CKRLDD------ 234

Query: 73  FKYHAFRE--KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS 130
                F E  +K+   W+A+I          E L +F  M   GV V +   + + ++C+
Sbjct: 235 -SLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCA 293

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
            L  +  G ++H    K AFGSD+ +    + +Y +CG +  A+++   M      SYN+
Sbjct: 294 ALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNA 353

Query: 191 MIDGYVKSGNIESARELFDSM-------------------------------------PI 213
           +I GY +S     A + F  +                                      I
Sbjct: 354 IIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSI 413

Query: 214 RERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALF 273
              N+   N++L+ Y + K+ L  A  +F+ M  RD +SWN+++  C + G  ++  A F
Sbjct: 414 SMSNICVANAILDMYGKCKA-LAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHF 472

Query: 274 DKMPKR---------------------------------------DVVSWANMIDGYAKL 294
             M                                          D    A ++D Y K 
Sbjct: 473 ASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKC 532

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
           G ++ A ++ D   ++ +V+ NA++ G+     S  A + F  M  E+ ++PD+ +   V
Sbjct: 533 GMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRM-LEMGVNPDNFTYAAV 591

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
           L   A L  +  G  IH  + K +   +      L+DMYSKCG+++++  +FE+  +   
Sbjct: 592 LDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDF 651

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
             WNAM+ G A HGLGE A  L   M+ ++++P+  TF  +L ACAH GLV +GL  F++
Sbjct: 652 VTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDV 711

Query: 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534
           M   + L+P+ +HY CMVDILGR+G I+ A NL++ MP E + VIWR LLS C+ + N+ 
Sbjct: 712 MLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCKIHGNVE 771

Query: 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           V E   + L+ +D  +SS+ VLLSN++A  GMW +   +R MM+   LKK PGCSWIEL+
Sbjct: 772 VAEKATRALLQLDPQDSSACVLLSNIYADAGMWGNVSEMRKMMRHNKLKKEPGCSWIELK 831

Query: 595 GVVHEFFVRDKSRLQVRDIYYML 617
             VH F V DK   +  +IY  L
Sbjct: 832 DEVHAFLVGDKGHPRDEEIYEKL 854



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 154/591 (26%), Positives = 263/591 (44%), Gaps = 87/591 (14%)

Query: 71  IFFKYHAFR--EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA 128
           +FF YHA    +K  P   N       +   P   +  F               S + + 
Sbjct: 14  LFFSYHAIPLFKKIPPIPTNNFSTLAQNQTQPPAKIRTF---------------SHIYQE 58

Query: 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY 188
           CS+   +  G Q H  +    F    F+ NCL+ +Y++C YL++A ++FDKM +RD VSY
Sbjct: 59  CSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKMYLRDVVSY 118

Query: 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE- 247
           NS+I GY   G ++ AR+ F  MP  ER+++SWNSV++G+ Q     + +  +F +M   
Sbjct: 119 NSIISGYASCGEMDIARKFFYEMP--ERDVVSWNSVISGFLQ-NGECRKSIDVFLEMGRC 175

Query: 248 ---RDLISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIA 300
               D  S   +L  C    + D    +   + K     DVV+ + ++  YAK  R+D +
Sbjct: 176 GVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDS 235

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
             +F E+P+++ V+ +AM+ G V+N  +++ LE+F  MQ  + +    +    +  + A 
Sbjct: 236 LSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQ-GVGVGVSQSIYASLFRSCAA 294

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
           L  +  G  +H +  K  F  +   G A +DMY+KCG + +A KV   +   S+  +NA+
Sbjct: 295 LSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAI 354

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
           I G A    G  A      + +  +  D+IT +G LNACA      EG       R++H 
Sbjct: 355 IVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEG-------RQVHG 407

Query: 481 LE------PELQHYGCMVDILGRAGHIEAARNLIEDMP---------------------- 512
           L         +     ++D+ G+   +  A +L + M                       
Sbjct: 408 LAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEE 467

Query: 513 ------------MEPNDVIWRTLLSACRNYENLNVGEPVAKHLI----GMDSSNSSSYVL 556
                       MEP+D  + ++L AC   + LN G  +   +I    G DS   ++ V 
Sbjct: 468 TLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALV- 526

Query: 557 LSNMFAGLGMWNDARRVRSMMKERNLKK----LPGCSWIELEGVVHEFFVR 603
             +M+   GM   A ++    +++ +      + G S ++     H+FF R
Sbjct: 527 --DMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSR 575



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 159/676 (23%), Positives = 283/676 (41%), Gaps = 124/676 (18%)

Query: 3   VSANYNQPCNSTQSTLLLLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKL------- 52
           ++ N  QP    ++   + ++C   N +N   Q HARMI  GF   T ++  L       
Sbjct: 38  LAQNQTQPPAKIRTFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKC 97

Query: 53  -----------------VASFSS-----SPCTPLTEFARYIFFKYHAFREKKDPFLWNAI 90
                            V S++S     + C  + + AR  F++      ++D   WN++
Sbjct: 98  LYLDYACKVFDKMYLRDVVSYNSIISGYASCGEM-DIARKFFYEM----PERDVVSWNSV 152

Query: 91  IKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAF 150
           I  +    + ++++ +F  M   GV  D+ S ++VLKAC  L   + G+Q+HGL+ K  F
Sbjct: 153 ISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGF 212

Query: 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDS 210
             D+   + L+ +Y +C  L+ +  +F ++  ++ VS+++MI G V++       ELF  
Sbjct: 213 DCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKE 272

Query: 211 MP-----IRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGK 265
           M      + +    S        + L+ G +      +     D+I   + L    KCG+
Sbjct: 273 MQGVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGR 332

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK---------------- 309
           M DAQ +   MPK  + S+  +I GYA+  R   A + F  + K                
Sbjct: 333 MADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNA 392

Query: 310 -----------------------RDVVACNAMMGGYVRNGYSMKALEIFDNMQ------- 339
                                   ++   NA++  Y +     +A ++FD M+       
Sbjct: 393 CASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSW 452

Query: 340 ------CEL-----------------YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
                 CE                   + PDD +   VL A A    ++ G+ IH  + K
Sbjct: 453 NAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIK 512

Query: 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
                +   G AL+DMY KCG IE A K+ ++ E  ++  WNA+I+G ++    E A   
Sbjct: 513 SGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKF 572

Query: 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC--MVDI 494
              M  + + PD+ T+  +L+ CA+   V  G    ++  +I K E +   Y C  +VD+
Sbjct: 573 FSRMLEMGVNPDNFTYAAVLDTCANLATVGLGK---QIHAQIIKQELQSDVYICSTLVDM 629

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD----SSN 550
             + G+++ ++ + E  P   + V W  +L     Y +  +GE   K    M       N
Sbjct: 630 YSKCGNMQDSQLMFEKAP-NRDFVTWNAMLCG---YAHHGLGEEALKLFESMQLVNVKPN 685

Query: 551 SSSYVLLSNMFAGLGM 566
            +++V +    A +G+
Sbjct: 686 HATFVSVLRACAHMGL 701


>gi|356498922|ref|XP_003518295.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Glycine max]
          Length = 682

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 200/680 (29%), Positives = 344/680 (50%), Gaps = 106/680 (15%)

Query: 23  KCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKK 82
           K   L+ + Q+HA+++      + H    L+     + CT L   + Y     H FR   
Sbjct: 12  KITNLHHLRQLHAQLVLHSQHHHNHWVALLL-----TQCTHLLAPSNYT---SHIFRAAT 63

Query: 83  DP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSA--SLVLKACSRLGLIEEG 138
            P   ++  ++K YS      + +V     +     +  +++   +++K+  + G++   
Sbjct: 64  YPNVHVFTCMLKYYSQIGATTQVVVSLFKHMQYYNDIKPYTSFYPVLIKSAGKAGML--- 120

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
             +H  L K+    D  ++N ++ +Y + G +E AR+LFD+M  R +  +N +I GY K 
Sbjct: 121 --LHAYLLKLGHSHDHHVRNAIMGIYAKYGCIELARKLFDEMPDRTAADWNVIISGYWKC 178

Query: 199 GN---------------------------------IESARELFDSMPIRERNLISWNSVL 225
           GN                                 +E+AR  FD MP  ER + SWN++L
Sbjct: 179 GNEKEATRLFCMMGESEKNVITWTTMVTGHAKMRNLETARMYFDEMP--ERRVASWNAML 236

Query: 226 NGYAQLKSGLQFAWQIFEKM----PERDLISWNSMLHGC--------------------- 260
           +GYAQ     Q   ++F+ M     E D  +W ++L  C                     
Sbjct: 237 SGYAQ-SGAAQETVRLFDDMLSSGNEPDETTWVTVLSSCSSLGDPCLAESIVRKLDRMNF 295

Query: 261 --------------VKCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRLFD 305
                          KCG ++ AQ +F+++   ++ V+W  MI  YA++G + +AR LF+
Sbjct: 296 RSNYFVKTALLDMHAKCGNLEVAQKIFEQLGVYKNSVTWNAMISAYARVGDLSLARDLFN 355

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
           +MP+R+ V+ N+M+ GY +NG S+KA+++F  M       PD+ ++V V SA   LG + 
Sbjct: 356 KMPERNTVSWNSMIAGYAQNGESLKAIQLFKEMISSKDSKPDEVTMVSVFSACGHLGRLG 415

Query: 366 KGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
            G      L ++   L+     +LI MY +CGS+E+A   F+++    +  +N +I+GLA
Sbjct: 416 LGNWAVSILHENHIKLSISGYNSLIFMYLRCGSMEDARITFQEMATKDLVSYNTLISGLA 475

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL 485
            HG G  +  L+ +M+   I PD IT+ G+L AC+HAGL++EG   FE ++      P++
Sbjct: 476 AHGHGTESIKLMSKMKEDGIGPDRITYIGVLTACSHAGLLEEGWKVFESIKV-----PDV 530

Query: 486 QHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIG 545
            HY CM+D+LGR G +E A  LI+ MPMEP+  I+ +LL+A   ++ + +GE  A  L  
Sbjct: 531 DHYACMIDMLGRVGKLEEAVKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLFK 590

Query: 546 MDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHE----FF 601
           ++  NS +YVLLSN++A  G W D  +VR  M+++ +KK    ++I +E   HE    + 
Sbjct: 591 VEPHNSGNYVLLSNIYALAGRWKDVDKVRDKMRKQGVKK---TTFI-VENRPHEKSDIYN 646

Query: 602 VRDKSRLQVRDIYYMLDNMW 621
           +    ++++R   Y++D +W
Sbjct: 647 LLAHLKVKLRRAGYVIDKIW 666


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 164/458 (35%), Positives = 263/458 (57%), Gaps = 10/458 (2%)

Query: 171 EFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM-------PIRERNLISWNS 223
           ++A  +++ +      + N+MI  +VK      +  L+  M       P +        +
Sbjct: 83  DYALSIYNSISHPTVFATNNMIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQA 142

Query: 224 VLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK-RDVV 282
             N +A ++ G Q    + +    +D+   N+++H    C +++ A+ +FD++P  RDVV
Sbjct: 143 CSNAFA-IREGAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVV 201

Query: 283 SWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
           SW +MI G+ +LG++ +A++LF EMP++DV++   ++ G V+NG   KAL+ F  +  E 
Sbjct: 202 SWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELG-EQ 260

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENA 402
            L P++A LV +L+A AQLG ++ G  IH      +F +    G AL+DMY+KCG I+ +
Sbjct: 261 KLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDES 320

Query: 403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
             +F+++ +     WN MI GLA HGLG+ A  L  +       P ++TF G+L AC+ A
Sbjct: 321 RFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRA 380

Query: 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRT 522
           GLV EG   F+LM   + +EPE++HYGCMVD+L RAG +  A  +I  MP  P+ V+W +
Sbjct: 381 GLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWAS 440

Query: 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
           +L +C+ +  + +GE +   LI MD +++  YV L+ +FA L  W D  +VR +M ERN 
Sbjct: 441 VLGSCQVHGFIELGEEIGNKLIQMDPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNS 500

Query: 583 KKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
            K+ G S IE EG VH F   DK   +  +IY ML+ M
Sbjct: 501 NKIAGWSLIEAEGRVHRFVAGDKEHERTTEIYKMLEIM 538



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 224/425 (52%), Gaps = 26/425 (6%)

Query: 27  LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFL 86
           +  + Q HAR++  G   +  +T+ L+A  + S  +  +++A  I+            F 
Sbjct: 44  ITQIKQAHARILVLGLANDGRITSHLLAFLAISSSSLPSDYALSIYNSI----SHPTVFA 99

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSV-DKFSASLVLKACSRLGLIEEGLQIHGLL 145
            N +I+ +  G  P+ ++ ++  M  + V+  +K + + VL+ACS    I EG Q+   +
Sbjct: 100 TNNMIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHV 159

Query: 146 RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM-GIRDSVSYNSMIDGYVKSGNIESA 204
            K+ F  D+F++N LI LY  C  +E A+Q+FD++   RD VS+NSMI G+V+ G I  A
Sbjct: 160 IKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVA 219

Query: 205 RELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML------- 257
           ++LF  MP  E+++ISW ++++G  Q    L+ A   F+++ E+ L    ++L       
Sbjct: 220 QKLFVEMP--EKDVISWGTIISGCVQ-NGELEKALDYFKELGEQKLRPNEAILVSLLAAA 276

Query: 258 --HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
              G ++ GK   + A   + P    +  A ++D YAK G +D +R LFD MP++D  + 
Sbjct: 277 AQLGTLEYGKRIHSIANSLRFPMTASLGTA-LVDMYAKCGCIDESRFLFDRMPEKDKWSW 335

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           N M+ G   +G   +AL +F+    + + HP + + + VL+A ++ G + +G    + L 
Sbjct: 336 NVMICGLATHGLGQEALALFEKFLTQGF-HPVNVTFIGVLTACSRAGLVSEGKHFFK-LM 393

Query: 376 KDQFSLNG--KHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH--WNAMINGLAIHGLGE 431
            D + +    +H   ++D+ S+ G + +A+++  ++     D   W +++    +HG  E
Sbjct: 394 TDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMINRM-PAPPDPVLWASVLGSCQVHGFIE 452

Query: 432 LAFDL 436
           L  ++
Sbjct: 453 LGEEI 457



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 137/311 (44%), Gaps = 28/311 (9%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +KD   W  II       + ++AL  F  + +  +  ++     +L A ++LG +E G +
Sbjct: 228 EKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYGKR 287

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           IH +   + F     L   L+ +Y +CG ++ +R LFD+M  +D  S+N MI G    G 
Sbjct: 288 IHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHGL 347

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM------PERDLISWN 254
            + A  LF+    +  + ++   +    A  ++GL    + F K+       E ++  + 
Sbjct: 348 GQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYG 407

Query: 255 SMLHGCVKCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
            M+    + G + DA  + ++MP   D V WA+++      G +++   + +++ + D  
Sbjct: 408 CMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQMDP- 466

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA------IAQLGHIDKG 367
                      NG+ ++   IF  ++       +D S V  L A      IA    I+  
Sbjct: 467 ---------THNGHYVQLARIFARLR-----KWEDVSKVRRLMAERNSNKIAGWSLIEAE 512

Query: 368 VAIHRYLEKDQ 378
             +HR++  D+
Sbjct: 513 GRVHRFVAGDK 523


>gi|28558786|gb|AAO45757.1| selenium binding protein-like protein [Cucumis melo subsp. melo]
          Length = 565

 Score =  304 bits (779), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 184/583 (31%), Positives = 311/583 (53%), Gaps = 26/583 (4%)

Query: 12  NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
            S  + L  L KCKT+ ++ QIH+ MI T  +KN    ++L+   ++S    + E+AR +
Sbjct: 3   QSYYTILSFLEKCKTMKELKQIHSLMIKTSVVKNIIPCSRLIDFCANSELGDI-EYARTV 61

Query: 72  FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
           F +     ++   ++WN++IK Y +G D   AL M+  M   G   D F+   VLK CS 
Sbjct: 62  FDQ----TDQLTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKGFYPDHFTFPFVLKVCSA 117

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
           + L+  G  +H  + K  F  D++  +CL+++YV CG L    ++F+ +   + V++ S+
Sbjct: 118 IDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSL 177

Query: 192 IDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI 251
           I G+V +   + A  LF  M   E   +  N +    A   +              RD+ 
Sbjct: 178 IAGFVNNDQPKEALRLFKDM---ENEGVEPNEITMTTALAAA-----------ARCRDIH 223

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           +   + +   + G +D     F    + +V+    ++D YAK G++  AR LFD+MP+R+
Sbjct: 224 TGKLVRYRLRQLG-LDP----FHTNSRFNVILATAIMDMYAKCGKLVTARNLFDKMPQRN 278

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           +V  N+M+  + + G   +AL +F +M+   ++ P+ A+ + V+ A   L     G ++H
Sbjct: 279 LVVWNSMISAFSQYGRGAEALRLFVDMELAGFV-PNKATFLSVIRACTHLRFRSTGQSLH 337

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
             + K  F      G AL+DMY+K G  + A+K+F ++    V  W  MI+GLAI G G+
Sbjct: 338 ARVLKANFHEFVAIGTALMDMYAKSGDADTALKIFSKLRKKDVMAWTTMISGLAIQGKGK 397

Query: 432 LAFDLLMEMER-LSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
            A ++   ME    + PD IT+  +L AC+H GLV+EG   F  M  ++ +EP ++HYGC
Sbjct: 398 EALNVFRRMEEEAEVAPDQITYIAVLWACSHLGLVEEGQKHFTSMMEVYGIEPTMEHYGC 457

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           M+D+L RAGH E A  L+  MP +PN  I  ++L+ C  Y N+ +   V  H++ + +S+
Sbjct: 458 MIDLLSRAGHSEEAEELLVKMPTQPNATILSSILNGCEMYGNVGLANRVKSHIVELKNSS 517

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
           S  YVLLSN+ A    W + +  R ++K + + K  G S++E+
Sbjct: 518 SGVYVLLSNIHAKACNWEEMKLARDILKHKKIGKTLGNSFVEM 560


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  304 bits (779), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 176/564 (31%), Positives = 293/564 (51%), Gaps = 46/564 (8%)

Query: 65  TEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL 124
           TE A+ +F+      + +D   W+AII        P+EAL +F  M +  +  ++ +   
Sbjct: 380 TEKAKQLFWGL----QGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMS 435

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +L AC+ L L++ G  IH    K    SDL     L+S+Y +CG+   A   F++M    
Sbjct: 436 ILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMS--- 492

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK---SGLQFAWQI 241
                                          R++++WNS++NGYAQ+    + +   +++
Sbjct: 493 ------------------------------SRDIVTWNSLINGYAQIGDPYNAIDMFYKL 522

Query: 242 FEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRV 297
                  D  +   ++  C     +D    +   + K     D      +ID YAK G +
Sbjct: 523 RLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSL 582

Query: 298 DIARRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
             A  LF++    +D V  N ++  Y++NG++ +A+  F  M+ E + HP+  + V VL 
Sbjct: 583 PSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENF-HPNSVTFVSVLP 641

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
           A A L    +G+A H  + +  F  N   G +LIDMY+KCG ++ + K+F +++      
Sbjct: 642 AAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVS 701

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           WNAM++G A+HG G+ A  L   M+   ++ D ++F  +L+AC HAGLV+EG   F  M 
Sbjct: 702 WNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMS 761

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
             + ++P+L+HY CMVD+LGRAG  +     I+ MP+EP+  +W  LL +CR + N+ +G
Sbjct: 762 DKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLG 821

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
           E    HL+ ++  N + +V+LS+++A  G W DA + RS M +  LKK PGCSW+EL+  
Sbjct: 822 EVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNK 881

Query: 597 VHEFFVRDKSRLQVRDIYYMLDNM 620
           VH F V DKS  Q+  ++ + + +
Sbjct: 882 VHAFRVGDKSHPQLESMHLLWNTL 905



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 161/583 (27%), Positives = 273/583 (46%), Gaps = 89/583 (15%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFS-SSPCTPLTEFARYIFFKYHAF 78
           LL  CK LN + QIHA++I +GF K+ H  T L+  +S    C    + AR +F      
Sbjct: 38  LLSSCKHLNPLLQIHAQIIVSGF-KHHHSITHLINLYSLFHKC----DLARSVF------ 86

Query: 79  REKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
               +P   LWN++I+ Y+      EAL M+  M++ G+  DK++ + VLKAC+    ++
Sbjct: 87  DSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQ 146

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           EG+  HG + +     D+F+   L+ +Y + G L+ AR++FDKM  RD V++N+MI G  
Sbjct: 147 EGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLS 206

Query: 197 KSGNIESARELFDSMPIR--ERNLISW-----------------------------NSVL 225
           +S +   A + F SM +   E + +S                              ++V 
Sbjct: 207 QSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVS 266

Query: 226 NGYAQLKS---GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV- 281
           NG   L S    +  A ++F++M ++D +SW +M+ G    G   +   LFDKM   +V 
Sbjct: 267 NGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVR 326

Query: 282 ----------VSWANMID----------------------------GYAKLGRVDIARRL 303
                     ++ A  ID                             YAK G  + A++L
Sbjct: 327 INKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQL 386

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           F  +  RD+VA +A++   V+ GY  +AL +F  MQ +  + P+  +L+ +L A A L  
Sbjct: 387 FWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQ-KMKPNRVTLMSILPACADLSL 445

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           +  G +IH +  K     +   G AL+ MY+KCG    A+  F ++    +  WN++ING
Sbjct: 446 LKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLING 505

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
            A  G    A D+  ++   +I PD  T  G++ ACA    + +G     L+ ++   E 
Sbjct: 506 YAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKL-GFES 564

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           +      ++D+  + G + +A  L        ++V W  +++A
Sbjct: 565 DCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 179/436 (41%), Gaps = 70/436 (16%)

Query: 24  CKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           C  LND++Q   IH  ++  GF  + H+   L+  ++     P  EF     F    F  
Sbjct: 541 CALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEF----LFNKTDF-- 594

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
            KD   WN II  Y      KEA+  F  M       +  +   VL A + L    EG+ 
Sbjct: 595 TKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA 654

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
            H  + ++ F S+  + N LI +Y +CG L+++ +LF++M  +D+VS+N+M+ GY   G+
Sbjct: 655 FHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGH 714

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
            + A  LF  M                               E   + D +S+ S+L  C
Sbjct: 715 GDRAIALFSLMQ------------------------------ESQVQIDSVSFVSVLSAC 744

Query: 261 VKCGKMDDAQALFDKMP-----KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
              G +++ + +F  M      K D+  +A M+D   + G  D        MP       
Sbjct: 745 RHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGV 804

Query: 316 NAMMGGYVRNGYSMKALEI-FDNMQCELYLHPDDASLVIVLSAI-AQLGH-IDKGVAIHR 372
              + G  R   ++K  E+  D++   + L P + +  +VLS+I AQ G   D G A  +
Sbjct: 805 WGALLGSCRMHSNVKLGEVALDHL---VKLEPRNPAHFVVLSSIYAQSGRWADAGKARSK 861

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
               +   L    G + +++ +K  +     K   Q+E   +  WN              
Sbjct: 862 M---NDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHL-LWNT------------- 904

Query: 433 AFDLLMEMERLSIEPD 448
              LL +ME++   PD
Sbjct: 905 ---LLEKMEKIGYVPD 917



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 10/191 (5%)

Query: 389 LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD 448
           LI++YS     + A  VF+   + S   WN+MI           A ++   M    +EPD
Sbjct: 69  LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPD 128

Query: 449 DITFTGLLNACAHAGLVKEGLLCF-ELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNL 507
             TFT +L AC  A  ++EG+    E+ RR   LE ++     +VD+  + G ++ AR +
Sbjct: 129 KYTFTFVLKACTGALNLQEGVWFHGEIDRR--GLERDVFIGAGLVDMYSKMGDLKRAREV 186

Query: 508 IEDMPMEPNDVIWRTLLSACRNYENL--NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565
            + MP + + V W  +++     E+    V    +  L+G++ S+ S    L N+F G+ 
Sbjct: 187 FDKMP-KRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVS----LLNLFPGIC 241

Query: 566 MWNDARRVRSM 576
             ++    RS+
Sbjct: 242 KLSNIELCRSI 252


>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 575

 Score =  304 bits (779), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 179/542 (33%), Positives = 296/542 (54%), Gaps = 65/542 (11%)

Query: 102 EALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL--RKVAFGSDLFLQNC 159
           E+++    +L +G   D +  + +L   ++ G IE   ++   +  R VA        N 
Sbjct: 45  ESMLFLAHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVAD------WNV 98

Query: 160 LISLYVRCGYLEFARQLFDKMG----IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRE 215
           +IS Y +CG  E A  LF  MG     R+ +++ +MI G+ K GN+++AR  FD MP  E
Sbjct: 99  MISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMP--E 156

Query: 216 RNLISWNSVLNGYAQLKSGLQFAWQIFEKM-----PERDLISWNSMLHGC---------- 260
           R+++SWN++L+GYAQ     +   ++F  M      + D  +W +++  C          
Sbjct: 157 RSVVSWNAMLSGYAQ-GGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSE 215

Query: 261 --------------------------VKCGKMDDAQALFDKM---PKRDVVSWANMIDGY 291
                                      KCG ++ A  +F+++     R  V W  MI  Y
Sbjct: 216 SIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAY 275

Query: 292 AKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDAS 350
           A++G +  A+ LFD+MP+RD V+ N+M+ GY +NG S KA+++F+ M   E    PD+ +
Sbjct: 276 ARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVT 335

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE 410
           +V V SA   LG +  G      L+ +   ++     +LI+MYS+CGS+++A+ +F+++ 
Sbjct: 336 MVSVFSACGHLGELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMA 395

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470
              +  +N +I+G A HG G  + +LL +M+   IEPD IT+  +L AC+HAGL+ EG  
Sbjct: 396 TRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQR 455

Query: 471 CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNY 530
            FE ++      P++ HY CM+D+LGRAG +E A  LI+ MPMEP+  I+ +LL+A   +
Sbjct: 456 LFESIKF-----PDVDHYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIH 510

Query: 531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSW 590
           + + +GE  A  L  ++  NS +Y LLSN++A  G W +  +VR  M+++ +KK  G SW
Sbjct: 511 KQVELGELAAAKLFKVEPHNSGNYALLSNIYASAGRWKEGDKVRDTMRKQGVKKTTGLSW 570

Query: 591 IE 592
           +E
Sbjct: 571 LE 572


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  304 bits (779), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 179/539 (33%), Positives = 287/539 (53%), Gaps = 31/539 (5%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           WN  ++  ++     E++ ++  ML +G S D FS   +LK+C+ L L   G Q+H  + 
Sbjct: 18  WNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVI 77

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK--MGIRDSVSYNSMIDGYVKSGNIESA 204
           +    ++ F+   LIS+Y +CG +E AR++F++     +  V YN++I GY  +  +  A
Sbjct: 78  RGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDA 137

Query: 205 RELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG-CVKC 263
             +F  M  +E  +   +  + G   L +  ++ W                 LHG CVK 
Sbjct: 138 AFMFRRM--KETGVSVDSVTILGLVPLCTVPEYLW-------------LGRSLHGECVKG 182

Query: 264 GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV 323
           G   +   L             + I  Y K G V+  RRLFDEMP + ++  NA++ GY 
Sbjct: 183 GTYSEVAVL------------NSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYS 230

Query: 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG 383
           +NG +   LE+F+ M+    + PD  +LV VLS+ A LG    G  +   +E + F+ N 
Sbjct: 231 QNGLAYDVLELFEQMKSS-GVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNV 289

Query: 384 KHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
               ALI MY++CG++  A  VF+ +   S+  W AMI    +HG+GE    L  +M + 
Sbjct: 290 FLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKR 349

Query: 444 SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503
            I PD   F  +L+AC+H+GL  +GL  F  M+R +KLEP  +HY C+VD+LGRAG ++ 
Sbjct: 350 GIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDE 409

Query: 504 ARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563
           A   I+ MP+EP+  +W  LL AC+ ++N+++ E     +I  +  N   YVL+SN+++ 
Sbjct: 410 AMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSD 469

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWT 622
                   R+R MM+ER  +K PG S++E +G VH F   D+S  Q  +++ MLD + T
Sbjct: 470 SKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGKVHLFLAGDRSHEQTEEVHRMLDELET 528



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/442 (25%), Positives = 204/442 (46%), Gaps = 54/442 (12%)

Query: 19  LLLRKCKTLN---DVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
            +L+ C +L+      Q+H  +I  G      + T L++ +       L E AR +F + 
Sbjct: 55  FILKSCASLSLPVSGQQLHCHVIRGGCEAEPFVLTALISMYCK---CGLVEDARKVFEEN 111

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
                 +    +NA+I  Y+      +A  MF  M + GVSVD  +   ++  C+    +
Sbjct: 112 P--HSSQLGVCYNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYL 169

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
             G  +HG   K    S++ + N  I++Y++CG +E  R+LFD+M ++  +++N++I GY
Sbjct: 170 WLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGY 229

Query: 196 VKSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQL---KSGLQFAWQIFEKMPERDL 250
            ++G      ELF+ M       +  +  SVL+  A L   K G +    +       ++
Sbjct: 230 SQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNV 289

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
              N+++    +CG +  A+A+FD MP + +VSW  MI  Y   G  +    LFD+M KR
Sbjct: 290 FLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKR 349

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
            +                                 PD A  V+VLSA +  G  DKG+ +
Sbjct: 350 GI--------------------------------RPDGAVFVMVLSACSHSGLTDKGLEL 377

Query: 371 HRYLEKD-QFSLNGKHGVALIDMYSKCGSIENAIKVFEQI---EDGSVDHWNAMINGLAI 426
            R ++++ +     +H   L+D+  + G ++ A++  + +    DG+V  W A++    I
Sbjct: 378 FRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAV--WGALLGACKI 435

Query: 427 HG---LGELAFDLLMEMERLSI 445
           H    + ELAF  ++E E ++I
Sbjct: 436 HKNVDMAELAFAKVIEFEPMNI 457


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  304 bits (779), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 181/524 (34%), Positives = 280/524 (53%), Gaps = 47/524 (8%)

Query: 140 QIHGLLRKVAFGSDLF-----LQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           QIH  + K+   SD F     L +C ISL      L++A +LF      D   +N++I G
Sbjct: 23  QIHANVLKLGLESDPFIAGKLLHHCAISL---SDSLDYACRLFRYTPNPDVFMHNTLIRG 79

Query: 195 YVKSGNIESARELFDSM---PIRERNLISWNSVLNGYAQLKS---GLQ------------ 236
             +S   + +   F  M        +  S+  ++   A L+S   G+Q            
Sbjct: 80  LYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLHCQALVHGLDT 139

Query: 237 -------------------FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP 277
                              FA ++F++MPE + I+WN+M+  C + G M   + LFD MP
Sbjct: 140 HLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMP 199

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
            R+++SW  M+ GY K G +++AR +F EMP +D V+ + M+ G+  NGY  +A   F  
Sbjct: 200 VRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRE 259

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
           +Q    + P++ SL  VLSA AQ G ++ G  +H ++EK   +       AL+D YSKCG
Sbjct: 260 LQ-RKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCG 318

Query: 398 SIENAIKVFEQI-EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLL 456
           ++  A  VFE+I  + ++  W +M+  LA+HG GE A  +  +ME   I PD+I F  LL
Sbjct: 319 NVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLL 378

Query: 457 NACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPN 516
            AC+HAGLV++G   F+ M+ ++ +EP ++HYGCMVD+ GRAG ++ A   +  MP+   
Sbjct: 379 YACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCT 438

Query: 517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSM 576
            +IWRTLL AC  + ++ + E V + L  +D +NSS +VLLSN +A  G W DA  VR  
Sbjct: 439 AIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRRS 498

Query: 577 MKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           M E+ + K PG S IE++ +++ F    K      + Y  L  +
Sbjct: 499 MTEQRITKTPGWSMIEVDKIMYTFLAGTKQYKITEEAYKKLKEI 542



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 139/500 (27%), Positives = 251/500 (50%), Gaps = 65/500 (13%)

Query: 18  LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           L LL  CK+L    QIHA ++  G   +  +  KL+   + S    L    R   F+Y  
Sbjct: 9   LSLLNICKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACR--LFRY-- 64

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVS-VDKFSASLVLKACSRLGLIE 136
                D F+ N +I+       P+++L+ F  M  N  S  D FS + ++KA + L  + 
Sbjct: 65  -TPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVR 123

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G+Q+H         + LF+   LIS+Y  CG++ FAR++FD+M   +++++N+M+    
Sbjct: 124 VGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACC 183

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNS 255
           + G+++  RELFD MP+  RNL+SWN +L GY   K+G L+ A ++F +MP +D +SW++
Sbjct: 184 RGGDMKGGRELFDLMPV--RNLMSWNVMLAGYT--KAGELELAREMFLEMPMKDDVSWST 239

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRD----------------------------------- 280
           M+ G    G  ++A + F ++ ++                                    
Sbjct: 240 MIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSG 299

Query: 281 ---VVSWAN-MIDGYAKLGRVDIARRLFDE-MPKRDVVACNAMMGGYVRNGYSMKALEIF 335
              +VS  N ++D Y+K G V +A+ +F+  M +R++V+  +MM     +G+  +A+ IF
Sbjct: 300 LAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIF 359

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN----GKHGVALID 391
             M+ E  + PD+ + + +L A +  G +++G     Y +K +   N     +H   ++D
Sbjct: 360 HKME-ESGIRPDEIAFISLLYACSHAGLVEQGC---EYFDKMKGMYNIEPSIEHYGCMVD 415

Query: 392 MYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS-IEPDD 449
           +Y + G ++ A +   Q+    +   W  ++   ++HG  +LA  +    ERLS ++P++
Sbjct: 416 LYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQV---KERLSELDPNN 472

Query: 450 ITFTGLL-NACAHAGLVKEG 468
            +   LL NA A AG  K+ 
Sbjct: 473 SSDHVLLSNAYAVAGKWKDA 492


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  304 bits (778), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 176/478 (36%), Positives = 271/478 (56%), Gaps = 14/478 (2%)

Query: 168 GYLEFARQLFDKMGIRDSVSYNSMIDGY-VKSGNIESARELFDSM-------PIRERNLI 219
           G L +A QLFD++   D   YN+MI  + V   +  ++  +F SM       P R   + 
Sbjct: 63  GSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVF 122

Query: 220 SWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR 279
            + +  NG   L+ G Q      +   E +L   N+M+      G +D+A+ +FD    +
Sbjct: 123 VFKACGNGLGVLE-GEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQ 181

Query: 280 DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQ 339
           D+ SW  MI GY   G +  A+ +FDEM +RDVV+   ++ GYV+ G   +AL++F  M 
Sbjct: 182 DLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEM- 240

Query: 340 CELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSI 399
            +    P++ +L   L+A A L  +D+G  IH Y++K +  +N +   +L+DMY+KCG I
Sbjct: 241 LQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEI 300

Query: 400 ENAIKVFEQIEDG---SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLL 456
           + A KVF   E G    V  WNAMI G A+HG  + A DL  +M+   + P+ +TF  LL
Sbjct: 301 DFAAKVFHD-EYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALL 359

Query: 457 NACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPN 516
           NAC+H  LV+EG   F+ M   + +EPE++HYGCMVD+LGR+G ++ A   + +MPM P+
Sbjct: 360 NACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPD 419

Query: 517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSM 576
             IW  LL ACR ++++  G+ + K +  +DS +   +VLL+N+++  G W++A+ VR  
Sbjct: 420 ATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQK 479

Query: 577 MKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVATSCTHYG 634
           ++    KK PGCS IEL GV H+F V D+S  Q + +Y  LD M T    A     +G
Sbjct: 480 IEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFG 537



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 139/505 (27%), Positives = 246/505 (48%), Gaps = 69/505 (13%)

Query: 5   ANYNQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPL 64
           + + +P NS Q  L  L  CK++N + Q HA +ITTG I +     KL+    +S    L
Sbjct: 6   STFKKPLNSNQLQLFSLESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSL 65

Query: 65  TEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEA----LVMFCLMLDNGVSVDKF 120
           + +A  +F +      K D F++N +IK  +H + P  +     +   ++  +G   +++
Sbjct: 66  S-YAHQLFDQI----PKPDVFIYNTMIK--AHAVIPTSSHNSMRIFLSMVRVSGFLPNRY 118

Query: 121 SASLVLKACSR-LGLIE-EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD 178
           +   V KAC   LG++E E +++H +  K+   S+LF+ N +I +Y   G ++ AR++FD
Sbjct: 119 TFVFVFKACGNGLGVLEGEQIRVHAI--KIGLESNLFVTNAMIRMYANWGLVDEARRVFD 176

Query: 179 KMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQL---KSGL 235
               +D  S+N MI GYV SG I  A+E+FD M   ER+++SW +++ GY Q+   K  L
Sbjct: 177 WSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEM--SERDVVSWTTIIAGYVQVGCFKEAL 234

Query: 236 QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS----WANMIDGY 291
               ++ +  P  +  +  S L  C     +D  + +   + K ++       A+++D Y
Sbjct: 235 DLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMY 294

Query: 292 AKLGRVDIARRLF-DEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
           AK G +D A ++F DE   K  V   NAM+GGY  +G S +A+++F+ M+ E  + P+  
Sbjct: 295 AKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVE-KVSPNKV 353

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           + V +L+A +    +++G    +       S+   +G+                      
Sbjct: 354 TFVALLNACSHGKLVEEGRGYFK-------SMASSYGI---------------------- 384

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
            +  ++H+  M++ L   GL + A + +  M    + PD   +  LL AC     ++ G 
Sbjct: 385 -EPEIEHYGCMVDLLGRSGLLKEAEETVFNM---PMAPDATIWGALLGACRIHKDIERG- 439

Query: 470 LCFELMRRIHKLEPEL--QHYGCMV 492
                 +RI K+  EL   H GC V
Sbjct: 440 ------QRIGKIIKELDSDHIGCHV 458


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 198/643 (30%), Positives = 308/643 (47%), Gaps = 103/643 (16%)

Query: 75  YHAFREKKDPFL--WNAIIKTYSHGLDPKEA--LVMFCLMLDNGVSVDKFSASLVLKACS 130
           +H F +   P +  +N +I+ YS       A  L ++  ML + V+ + ++    LKACS
Sbjct: 77  HHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKACS 136

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
            L     G  IH         +DLF+   L+ +YV+C  L  A  +F  M  RD V++N+
Sbjct: 137 ALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNA 196

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVL------------------------- 225
           M+ GY   G    A     SM ++   L    S L                         
Sbjct: 197 MLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIR 256

Query: 226 -------NGYAQLKSG----------------LQFAWQIFEKMPERDLISWNSMLHGCVK 262
                  N  ++L  G                L +A ++F+ MP R+ ++W++++ G V 
Sbjct: 257 ACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVL 316

Query: 263 CGKMDDAQALFDKMPKR----------------------------------------DVV 282
           C +M  A  LF  M  +                                        D+ 
Sbjct: 317 CSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLT 376

Query: 283 SWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
           +  +++  YAK G +D A  LFDEM  +D V+ +A++ GYV+NG + +A  +F  MQ   
Sbjct: 377 AGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQ-AC 435

Query: 343 YLHPDDASLVIVLSAIAQL-----GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
            + PD A++V ++ A + L     G    G  I R L  +    N     ALIDMY+KCG
Sbjct: 436 NVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICN-----ALIDMYAKCG 490

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
            I+ + +VF  +    +  WN MI G  IHGLG+ A  L +EM  L   PD +TF  LL+
Sbjct: 491 RIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLS 550

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
           AC+H+GLV EG   F +M   + L P ++HY CMVD+L R G ++ A   I+ MP+  + 
Sbjct: 551 ACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADV 610

Query: 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577
            +W  LL ACR Y+N+++G+ V++ +  +    + ++VLLSN+++  G +++A  VR + 
Sbjct: 611 RVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQ 670

Query: 578 KERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           K +  KK PGCSWIE+ G +H F   D+S  Q  +IY  LDN+
Sbjct: 671 KVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNI 713



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 109/450 (24%), Positives = 190/450 (42%), Gaps = 71/450 (15%)

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ-----LKSGLQFAWQIFEKMPERD 249
           ++ SG++  A  LFD +P    ++ ++N ++  Y+         GL    ++       +
Sbjct: 67  HIASGHLSRAHHLFDQIP--SPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPN 124

Query: 250 LISWNSMLHGCVK-----CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
             ++   L  C       CG+     A+   +     VS A ++D Y K   +  A  +F
Sbjct: 125 NYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTA-LLDMYVKCACLPDAAHIF 183

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELY-LHPDDASLVIVLSAIAQLGH 363
             MP RD+VA NAM+ GY  +G    A+    +MQ +++ L P+ ++LV +L  +AQ G 
Sbjct: 184 ATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGA 243

Query: 364 IDKGVAIHRYL----------EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
           + +G ++H Y            K + +     G AL+DMY+KCGS+  A +VF+ +   +
Sbjct: 244 LAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARN 303

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEM-----------------------------ERL- 443
              W+A+I G  +      AF L   M                             E+L 
Sbjct: 304 EVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLH 363

Query: 444 ------SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
                  +  D      LL+  A AGL+ + +  F+ M     +      Y  +V    +
Sbjct: 364 ALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS-----YSALVSGYVQ 418

Query: 498 AGHIEAARNLIEDMP---MEPNDVIWRTLLSACRNYENLNVGEPVAKHLI--GMDSSNSS 552
            G  E A  + + M    +EP+     +L+ AC +   L  G      +I  G+ S  S 
Sbjct: 419 NGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSI 478

Query: 553 SYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
              L+ +M+A  G  + +R+V +MM  R++
Sbjct: 479 CNALI-DMYAKCGRIDLSRQVFNMMPSRDI 507


>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 170/489 (34%), Positives = 275/489 (56%), Gaps = 47/489 (9%)

Query: 122 ASLVLKACSRL--GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK 179
           A+LV+   + +    I   + +H L  K+ F S LF+ N LI +Y  CG L FA++    
Sbjct: 27  AALVVALTTNINASTISSSIHVHAL--KLGFESYLFVSNALIHMYAMCGQLGFAQK---- 80

Query: 180 MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAW 239
                                      +FD M   +R+L+SWN+++ GY+Q     +   
Sbjct: 81  ---------------------------MFDGM--LDRDLVSWNTLICGYSQYNK-YKEVL 110

Query: 240 QIFEKMP----ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGY 291
           ++F+ M     + D ++   ++  C   G  + A ++   + +     DV     +ID Y
Sbjct: 111 RLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMY 170

Query: 292 AKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASL 351
            +LG +  AR+LFD MPKRDV++  +M+ GY +      A+++F  M     + PD  ++
Sbjct: 171 GRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAA-KVKPDKVTV 229

Query: 352 VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED 411
             VLSA A LG +D G A+H Y+ +     +   G +LIDMY KCG +E A++VF +++D
Sbjct: 230 ASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKD 289

Query: 412 GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC 471
                W ++I+GLA++G    A DL  +M R  ++P   TF G+L ACAHAGLV +GL  
Sbjct: 290 KDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEY 349

Query: 472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYE 531
           FE M  +H L P ++HYGC+VD+L R+G+I+ A   I+ MP+ P+ V+WR LLSAC+ + 
Sbjct: 350 FESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHG 409

Query: 532 NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           N+ + E   K L+ +D  +S +YVLLSN +AG+  W+DA ++R +M++ +++K  G S I
Sbjct: 410 NVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSI 469

Query: 592 ELEGVVHEF 600
           E++G+V  +
Sbjct: 470 EVDGMVSNY 478



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 171/377 (45%), Gaps = 56/377 (14%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           +D   WN +I  YS     KE L +F  M    +  D  +   ++ ACS LG  E    +
Sbjct: 88  RDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSM 147

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
              +++     D++L N LI +Y R G L  AR+LFD M  RD +S+ SMI GY ++   
Sbjct: 148 VKYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQF 207

Query: 202 ESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKM----PERDLISWNS 255
             A +LF  M     + + ++  SVL+  A L   L   W +   +     + D+   NS
Sbjct: 208 SDAVKLFQEMMAAKVKPDKVTVASVLSACAHL-GKLDVGWAVHHYIRRHGVQADIYVGNS 266

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           ++    KCG ++ A  +F +M  +D VSW ++I G A                       
Sbjct: 267 LIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLA----------------------- 303

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
                    NG++  AL++F  M  E  + P   + V +L A A  G ++KG+     +E
Sbjct: 304 --------VNGFANSALDLFSQMLRE-GVQPTHGTFVGILLACAHAGLVNKGLEYFESME 354

Query: 376 KDQFSLNG-----KHGVALIDMYSKCGSIENA---IKVFEQIEDGSVDHWNAMINGLAIH 427
               S++G     KH   ++D+ S+ G+I+ A   IK    + D  V  W  +++   +H
Sbjct: 355 ----SVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVV--WRILLSACKLH 408

Query: 428 G---LGELAFDLLMEME 441
           G   L E+A   L+E++
Sbjct: 409 GNVVLAEIATKRLLELD 425



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 21/244 (8%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           K+D   W ++I  YS      +A+ +F  M+   V  DK + + VL AC+ LG ++ G  
Sbjct: 188 KRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWA 247

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  +R+    +D+++ N LI +Y +CG +E A ++F +M  +DSVS+ S+I G   +G 
Sbjct: 248 VHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGF 307

Query: 201 IESARELFDSMPIRERNLISWNSVLN-----GYAQL-KSGLQFAWQIFEKMPERDLISWN 254
             SA +LF  M +RE    +  + +       +A L   GL++    FE M     +   
Sbjct: 308 ANSALDLFSQM-LREGVQPTHGTFVGILLACAHAGLVNKGLEY----FESMESVHGLVPA 362

Query: 255 SMLHGCV-----KCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIA----RRLF 304
              +GCV     + G +D A     KMP   DVV W  ++      G V +A    +RL 
Sbjct: 363 MKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLL 422

Query: 305 DEMP 308
           +  P
Sbjct: 423 ELDP 426


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 179/496 (36%), Positives = 271/496 (54%), Gaps = 41/496 (8%)

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYV--RCGYLEFARQLFDKMGIRDSVSYNSMI 192
           I +  Q H LL +     +    + LIS       G L +AR+LF +M   D    N+MI
Sbjct: 24  ISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMI 83

Query: 193 DGYVKSGNIESARELFDSMPIRERNL--ISWNSVLNGYAQL---KSGLQFAWQIFEKMPE 247
            GY +S N   A  L+  M  R   +   ++  VL   A+L   K G +F  ++ +    
Sbjct: 84  RGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFG 143

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
            DL   N++                               I  Y   G    A  +FDE 
Sbjct: 144 SDLFVINAL-------------------------------IQFYHNCGSFGCACDVFDES 172

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
             RDVV  N M+  ++  G S KA ++ D M     L PD+ ++V ++ A AQLG++++G
Sbjct: 173 TVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERG 232

Query: 368 VAIHRY-LEKDQFSLNGKH--GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
             +H Y  E D+F +N       AL+DMY+KCGSI+ A++VF ++   +V  WNA+I GL
Sbjct: 233 KFLHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGL 292

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
           A+HG GE A  L  +ME   + PDD+TF  LL AC+HAGLV EGL  F+ M+   ++EP 
Sbjct: 293 AMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPR 352

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
           ++HYGC+VD+L RA  ++ A   IE+MP++ N V+W TLL ACR+  + ++ E + + +I
Sbjct: 353 MEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVI 412

Query: 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
            ++  +   YV+LSN++AG+  W+ A ++R  MK + ++K PGCSWIEL G++H+F   D
Sbjct: 413 ELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGD 472

Query: 605 KSRLQVRDIYYMLDNM 620
           +S LQ   IY M++ M
Sbjct: 473 RSHLQTEQIYAMIEEM 488



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 123/454 (27%), Positives = 216/454 (47%), Gaps = 60/454 (13%)

Query: 11  CNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARY 70
           C    S   L   C +++   Q HA ++ T  + N   ++KL++  + S    L  +AR 
Sbjct: 8   CTKLISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLN-YARK 66

Query: 71  IFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS 130
           +F +     +  DPF+ N +I+ Y+   +P EA+ ++  M++ GV VD ++   VL AC+
Sbjct: 67  LFTQM----QNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACA 122

Query: 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNS 190
           RLG ++ G + H  + K  FGSDLF+ N LI  Y  CG    A  +FD+  +RD V++N 
Sbjct: 123 RLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNI 182

Query: 191 MIDGYVKSGNIESARELFDSMPIRERNL----ISWNSVLNGYAQL------KSGLQFAWQ 240
           MI+ ++  G  E A +L D M  +  NL    ++  S++   AQL      K    ++ +
Sbjct: 183 MINAHLNKGLSEKAFDLLDEM-TKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKE 241

Query: 241 IFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIA 300
           + +     DL+   +++    KCG +D A  +F +M  R+V +W  +I G A  G  + A
Sbjct: 242 LDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDA 301

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
             LFD+M                                    L PDD + + +L A + 
Sbjct: 302 ISLFDQMEHDK--------------------------------LMPDDVTFIALLCACSH 329

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGK--HGVALIDMYSKCGSIENAIKVFEQ--IEDGSVDH 416
            G +D+G+A+ + + K++F +  +  H   ++D+  +   +++A+   E   I+  SV  
Sbjct: 330 AGLVDEGLAMFQAM-KNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSV-L 387

Query: 417 WNAMINGLAIHGLGELAFDLLMEMER--LSIEPD 448
           W  ++      G     FDL  ++ R  + +EPD
Sbjct: 388 WATLLGACRSGG----HFDLAEKIGRRVIELEPD 417


>gi|224107543|ref|XP_002314516.1| predicted protein [Populus trichocarpa]
 gi|222863556|gb|EEF00687.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 199/609 (32%), Positives = 314/609 (51%), Gaps = 50/609 (8%)

Query: 25  KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDP 84
           K+L    Q HAR+++ GF +N  L TKL+++++      L+   R +F   H     K  
Sbjct: 41  KSLKLTQQCHARILSLGFTQNPFLATKLISAYAIFGVPALS---RLVFDSLHF----KSV 93

Query: 85  FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGL 144
           +LWN++I  +       EA   F  M   GV +D ++ + + K C  +G +  G  IHG 
Sbjct: 94  YLWNSLINGFVKNRAYNEAFGWFYQMCCRGVLLDDYTLATMSKVCHEIGDLNAGKLIHGK 153

Query: 145 LRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESA 204
             K  F  D+ + N L+S+Y +CG      +LFD+M  R+  S+N ++ GY  SG+    
Sbjct: 154 SLKTGFVLDVIVANSLMSMYSKCGGFGECLKLFDEMPERNVGSWNVILSGYADSGDRNFD 213

Query: 205 RELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC-VKC 263
           +E+                         SG     QI    P  D  + +S+L  C    
Sbjct: 214 KEV-------------------------SGFVKDMQIEGLKP--DAFTVSSLLTLCNGHM 246

Query: 264 GKMDDAQALFDKMPKRDVVSWAN--------MIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           GK D  + L   + + ++   +         +ID Y++  RVD+ RR+FD M  R+V A 
Sbjct: 247 GKRDHGRELHGFIVRIELAVGSGTEVHLGCCLIDMYSRSNRVDVGRRVFDRMECRNVYAW 306

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
            AM+ G+V+NG   + L +F  MQ    + P+  SLV VL A + +  +     IH Y  
Sbjct: 307 TAMINGHVQNGALEEGLVLFHEMQVRDGVEPNKVSLVSVLPACSAVAGLTGVKQIHGYAI 366

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH----WNAMINGLAIHGLGE 431
           + QF+ +     ALIDMYSKCGS+++A +VFE    GS       W++MI+G  +HG GE
Sbjct: 367 RKQFNNDVSLCNALIDMYSKCGSLDHAKQVFEF---GSFRRDPISWSSMISGYGLHGKGE 423

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
            A  +  +M +L  +PD IT  G+L+AC+ AGLV EGL  ++     ++++P ++   C+
Sbjct: 424 EAVFVYNKMLQLGNKPDMITIVGVLSACSRAGLVDEGLCIYKSAINKYRIKPTVEICACV 483

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551
           VD+LGR+G +  A + I+ MPMEP+  +W  ++SA   + N  + +   + L+ ++  N 
Sbjct: 484 VDMLGRSGQLGQALDYIKTMPMEPSPSVWGAVVSASIIHGNSEMQDLAYRFLVQLEPENP 543

Query: 552 SSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVR 611
           S+YV LSN+ A    W+    VR+MMK+R L K PGCSWI +    H F+  DK     +
Sbjct: 544 SNYVSLSNLHASSRRWDVVSEVRTMMKDRCLTKTPGCSWISINNTTHFFYAADKLHPCSK 603

Query: 612 DIYYMLDNM 620
            IY +L  +
Sbjct: 604 SIYELLGGL 612



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 211/450 (46%), Gaps = 65/450 (14%)

Query: 17  TLLLLRK-CKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           TL  + K C  + D+N    IH + + TGF+ +  +   L++ +S   C    E      
Sbjct: 130 TLATMSKVCHEIGDLNAGKLIHGKSLKTGFVLDVIVANSLMSMYSK--CGGFGEC----- 182

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLD---PKEALVMFCLMLDNGVSVDKFSASLVLKAC 129
            K      +++   WN I+  Y+   D    KE       M   G+  D F+ S +L  C
Sbjct: 183 LKLFDEMPERNVGSWNVILSGYADSGDRNFDKEVSGFVKDMQIEGLKPDAFTVSSLLTLC 242

Query: 130 S-RLGLIEEGLQIHGLLRK----VAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +  +G  + G ++HG + +    V  G+++ L  CLI +Y R   ++  R++FD+M  R+
Sbjct: 243 NGHMGKRDHGRELHGFIVRIELAVGSGTEVHLGCCLIDMYSRSNRVDVGRRVFDRMECRN 302

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIR---ERNLISWNSVLNGYAQLKSGLQFAWQI 241
             ++ +MI+G+V++G +E    LF  M +R   E N +S  SVL   + + +GL    QI
Sbjct: 303 VYAWTAMINGHVQNGALEEGLVLFHEMQVRDGVEPNKVSLVSVLPACSAV-AGLTGVKQI 361

Query: 242 ----FEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGR 296
                 K    D+   N+++    KCG +D A+ +F+    +RD +SW++MI GY   G+
Sbjct: 362 HGYAIRKQFNNDVSLCNALIDMYSKCGSLDHAKQVFEFGSFRRDPISWSSMISGYGLHGK 421

Query: 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
            + A  ++++M                                 +L   PD  ++V VLS
Sbjct: 422 GEEAVFVYNKM--------------------------------LQLGNKPDMITIVGVLS 449

Query: 357 AIAQLGHIDKGVAIHR-YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSV 414
           A ++ G +D+G+ I++  + K +     +    ++DM  + G +  A+   + +  + S 
Sbjct: 450 ACSRAGLVDEGLCIYKSAINKYRIKPTVEICACVVDMLGRSGQLGQALDYIKTMPMEPSP 509

Query: 415 DHWNAMINGLAIHG---LGELAFDLLMEME 441
             W A+++   IHG   + +LA+  L+++E
Sbjct: 510 SVWGAVVSASIIHGNSEMQDLAYRFLVQLE 539


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 201/646 (31%), Positives = 323/646 (50%), Gaps = 70/646 (10%)

Query: 21   LRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
            L+ C  + D+    +IH  +I  GF  + +L   L+  +    C  L +           
Sbjct: 681  LKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGR--CWGLEK-------ANQV 731

Query: 78   FREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
            F E  +P   LWN  I         ++ + +F  M  + +  +  +   VL+AC ++G +
Sbjct: 732  FHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGAL 791

Query: 136  EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
                QIHG + +    SD+ L N LIS+Y + G LE AR++FD M  R++ S+NSMI  Y
Sbjct: 792  NAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSY 851

Query: 196  VKSGNIESARELFDSMPIRE--RNLISWNSVLNGY------------AQLKSGLQFA--- 238
               G +  A  LF  +   +   ++++WN +L+G+             Q   G  F    
Sbjct: 852  AALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNS 911

Query: 239  ---WQIFEKMPERDLISWNSMLHG--------C------------VKCGKMDDAQALFDK 275
                 + + + E   ++     HG        C            VK   +  AQA+FD 
Sbjct: 912  SSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDN 971

Query: 276  MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKR----DVVACNAMMGGYVRNGYSMKA 331
            M  R++ +W +++ GY+  G  + A RL ++M K     D+V  N M+ GY   G + KA
Sbjct: 972  MKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKA 1031

Query: 332  LEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALID 391
                          P+ AS+  +L A A L  + KG  IH    ++ F  +     ALID
Sbjct: 1032 ------------FMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALID 1079

Query: 392  MYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDIT 451
            MYSK  S++NA KVF +I++ ++  WN MI G AI GLG+ A  +  EM+++ + PD IT
Sbjct: 1080 MYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAIT 1139

Query: 452  FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM 511
            FT LL+AC ++GL+ EG   F+ M   +++ P L+HY CMVD+LGRAG+++ A +LI  M
Sbjct: 1140 FTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTM 1199

Query: 512  PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDAR 571
            P++P+  IW  LL +CR ++NL   E  AK+L  ++ +NS++Y+L+ N+++    W D  
Sbjct: 1200 PLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMD 1259

Query: 572  RVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
             +R +M    ++     SWI++   VH F   +K       IY+ L
Sbjct: 1260 HLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFEL 1305



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 137/510 (26%), Positives = 239/510 (46%), Gaps = 68/510 (13%)

Query: 87   WNAIIKTYSHGLDPKE-ALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL 145
            WN+ ++ +          L +F  +   GV  D    S+ LK C+R+  I  G++IHG L
Sbjct: 641  WNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCL 700

Query: 146  RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAR 205
             K  F  D++L+  L++ Y RC  LE A Q+F +M   +++ +N  I   ++S  ++   
Sbjct: 701  IKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGV 760

Query: 206  ELFDSMPI-----RERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
            ELF  M           ++           L +  Q    +F    + D+   N ++   
Sbjct: 761  ELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMY 820

Query: 261  VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP----KRDVVACN 316
             K GK++ A+ +FD M  R+  SW +MI  YA LG ++ A  LF E+     K D+V  N
Sbjct: 821  SKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWN 880

Query: 317  AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376
             ++ G+  +GY  + L I   MQ E +  P+ +S+  VL AI++LG ++ G   H Y+ +
Sbjct: 881  CLLSGHFLHGYKEEVLNILQRMQGEGF-KPNSSSMTSVLQAISELGFLNMGKETHGYVLR 939

Query: 377  DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436
            + F  +   G +LIDMY K  S+ +A  VF+ +++ ++  WN++++G +  G+ E A  L
Sbjct: 940  NGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRL 999

Query: 437  LMEMERLSIEPDDITFTG------------------------LLNACAHAGLVKEG--LL 470
            L +ME+  I+PD +T+ G                        LL ACA   L+++G  + 
Sbjct: 1000 LNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEIH 1059

Query: 471  CFEL-----------------------MRRIHKLEPELQH-----YGCMV---DILGRAG 499
            C  +                       ++  HK+   +Q+     + CM+    I G   
Sbjct: 1060 CLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGK 1119

Query: 500  HIEAARNLIEDMPMEPNDVIWRTLLSACRN 529
               +  N ++ + + P+ + +  LLSAC+N
Sbjct: 1120 EAISVFNEMQKVGVGPDAITFTALLSACKN 1149



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 147/304 (48%), Gaps = 18/304 (5%)

Query: 184 DSVSYNSMIDGYVKSGNIESARELF-DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIF 242
           D+ + N +I  Y+  G+  SA  +F   +P   RN + WNS +  +      L    ++F
Sbjct: 607 DAAAKN-LISSYLGFGDFWSAAMVFYVGLP---RNYLKWNSFVEEFKSSAGSLHIVLEVF 662

Query: 243 EKMPERDLI----SWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKL 294
           +++  + ++     ++  L  C +   +     +   + KR    DV     +++ Y + 
Sbjct: 663 KELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRC 722

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
             ++ A ++F EMP  + +  N  +   +++    K +E+F  MQ   +L  + A++V V
Sbjct: 723 WGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFS-FLKAETATIVRV 781

Query: 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV--ALIDMYSKCGSIENAIKVFEQIEDG 412
           L A  ++G ++    IH Y+ +  F L+    +   LI MYSK G +E A +VF+ +E+ 
Sbjct: 782 LQACGKMGALNAAKQIHGYVFR--FGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENR 839

Query: 413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCF 472
           +   WN+MI+  A  G    A+ L  E+E   ++PD +T+  LL+     G  +E L   
Sbjct: 840 NTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNIL 899

Query: 473 ELMR 476
           + M+
Sbjct: 900 QRMQ 903


>gi|15220741|ref|NP_176416.1| mitochondrial editing factor 9 [Arabidopsis thaliana]
 gi|75097094|sp|O04590.1|PPR88_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62260, mitochondrial; Flags: Precursor
 gi|2160154|gb|AAB60776.1| F19K23.18 gene product [Arabidopsis thaliana]
 gi|332195821|gb|AEE33942.1| mitochondrial editing factor 9 [Arabidopsis thaliana]
          Length = 656

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 189/562 (33%), Positives = 304/562 (54%), Gaps = 37/562 (6%)

Query: 52  LVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLML 111
           +++ + S       E AR +F +  +    +D F WN +I  Y+      EAL++F  M 
Sbjct: 108 MISGYVSCGGIRFLEEARKLFDEMPS----RDSFSWNTMISGYAKNRRIGEALLLFEKMP 163

Query: 112 DNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLE 171
           +     +  S S ++    + G ++  +    L RK+       L   L++  ++   L 
Sbjct: 164 ER----NAVSWSAMITGFCQNGEVDSAVV---LFRKMPVKDSSPL-CALVAGLIKNERLS 215

Query: 172 FARQLFDKMGIRDS------VSYNSMIDGYVKSGNIESARELFDSMP----------IRE 215
            A  +  + G   S       +YN++I GY + G +E+AR LFD +P           RE
Sbjct: 216 EAAWVLGQYGSLVSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFRE 275

Query: 216 R---NLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQA 271
           R   N++SWNS++  Y  LK G +  A  +F++M +RD ISWN+M+ G V   +M+DA A
Sbjct: 276 RFCKNVVSWNSMIKAY--LKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFA 333

Query: 272 LFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKA 331
           LF +MP RD  SW  M+ GYA +G V++AR  F++ P++  V+ N+++  Y +N    +A
Sbjct: 334 LFSEMPNRDAHSWNMMVSGYASVGNVELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEA 393

Query: 332 LEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALID 391
           +++F  M  E    PD  +L  +LSA   L ++  G+ +H+ + K        H  ALI 
Sbjct: 394 VDLFIRMNIEGE-KPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKTVIPDVPVHN-ALIT 451

Query: 392 MYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
           MYS+CG I  + ++F++++    V  WNAMI G A HG    A +L   M+   I P  I
Sbjct: 452 MYSRCGEIMESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHI 511

Query: 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIED 510
           TF  +LNACAHAGLV E    F  M  ++K+EP+++HY  +V++    G  E A  +I  
Sbjct: 512 TFVSVLNACAHAGLVDEAKAQFVSMMSVYKIEPQMEHYSSLVNVTSGQGQFEEAMYIITS 571

Query: 511 MPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDA 570
           MP EP+  +W  LL ACR Y N+ +    A+ +  ++  +S+ YVLL NM+A +G+W++A
Sbjct: 572 MPFEPDKTVWGALLDACRIYNNVGLAHVAAEAMSRLEPESSTPYVLLYNMYADMGLWDEA 631

Query: 571 RRVRSMMKERNLKKLPGCSWIE 592
            +VR  M+ + +KK  G SW++
Sbjct: 632 SQVRMNMESKRIKKERGSSWVD 653



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 120/434 (27%), Positives = 213/434 (49%), Gaps = 34/434 (7%)

Query: 165 VRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSV 224
           +R GY+  AR +F+K+  R++V++N+MI GYVK   +  AR+LFD MP  +R++++WN++
Sbjct: 51  IRSGYIAEARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMP--KRDVVTWNTM 108

Query: 225 LNGYAQLKSGLQF---AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV 281
           ++GY     G++F   A ++F++MP RD  SWN+M+ G  K  ++ +A  LF+KMP+R+ 
Sbjct: 109 ISGYVSC-GGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRIGEALLLFEKMPERNA 167

Query: 282 VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
           VSW+ MI G+ + G VD A  LF +MP +D     A++ G ++N    +A  +       
Sbjct: 168 VSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSPLCALVAGLIKNERLSEAAWVLGQYGSL 227

Query: 342 LYLHPDDA-SLVIVLSAIAQLGHIDKGVAIHRYLE-----------KDQFSLNGKHGVAL 389
           +    D   +   ++    Q G ++    +   +            +++F  N     ++
Sbjct: 228 VSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFRERFCKNVVSWNSM 287

Query: 390 IDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD 449
           I  Y K G + +A  +F+Q++D     WN MI+G       E AF L  EM       D 
Sbjct: 288 IKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSEMP----NRDA 343

Query: 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ--HYGCMVDILGRAGHIEAARNL 507
            ++  +++  A  G V       EL R   +  PE     +  ++    +    + A +L
Sbjct: 344 HSWNMMVSGYASVGNV-------ELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDL 396

Query: 508 IEDMPME---PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL 564
              M +E   P+     +LLSA     NL +G  + + ++     +   +  L  M++  
Sbjct: 397 FIRMNIEGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKTVIPDVPVHNALITMYSRC 456

Query: 565 GMWNDARRVRSMMK 578
           G   ++RR+   MK
Sbjct: 457 GEIMESRRIFDEMK 470



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 117/428 (27%), Positives = 203/428 (47%), Gaps = 81/428 (18%)

Query: 158 NCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI---ESARELFDSMPIR 214
           N +IS YV+   +  AR+LFD M  RD V++N+MI GYV  G I   E AR+LFD MP  
Sbjct: 75  NTMISGYVKRREMNQARKLFDVMPKRDVVTWNTMISGYVSCGGIRFLEEARKLFDEMP-- 132

Query: 215 ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFD 274
            R+  SWN++++GYA+ +  +  A  +FEKMPER+ +SW++M+ G  + G++D A  LF 
Sbjct: 133 SRDSFSWNTMISGYAKNRR-IGEALLLFEKMPERNAVSWSAMITGFCQNGEVDSAVVLFR 191

Query: 275 KMPKRD-------------------------------------VVSWANMIDGYAKLGRV 297
           KMP +D                                     V ++  +I GY + G+V
Sbjct: 192 KMPVKDSSPLCALVAGLIKNERLSEAAWVLGQYGSLVSGREDLVYAYNTLIVGYGQRGQV 251

Query: 298 DIARRLFDEMPK---------------RDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342
           + AR LFD++P                ++VV+ N+M+  Y++ G  + A  +FD M+   
Sbjct: 252 EAARCLFDQIPDLCGDDHGGEFRERFCKNVVSWNSMIKAYLKVGDVVSARLLFDQMK--- 308

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL-EKDQFSLNGKHGVALIDMYSKCGSIEN 401
               D  S   ++     +  ++   A+   +  +D  S N      ++  Y+  G++E 
Sbjct: 309 --DRDTISWNTMIDGYVHVSRMEDAFALFSEMPNRDAHSWN-----MMVSGYASVGNVEL 361

Query: 402 AIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461
           A   FE+  +     WN++I     +   + A DL + M     +PD  T T LL+A   
Sbjct: 362 ARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTLTSLLSAST- 420

Query: 462 AGLVKEGLLCFELMRRIHKLE-----PELQHYGCMVDILGRAGHIEAARNLIEDMPMEPN 516
                 GL+   L  ++H++      P++  +  ++ +  R G I  +R + ++M ++  
Sbjct: 421 ------GLVNLRLGMQMHQIVVKTVIPDVPVHNALITMYSRCGEIMESRRIFDEMKLKRE 474

Query: 517 DVIWRTLL 524
            + W  ++
Sbjct: 475 VITWNAMI 482



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 115/262 (43%), Gaps = 46/262 (17%)

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
           N  L+  ++ G + +A+ +F+K+  R+ V+W  MI GY K   ++ AR+LFD MPKRDVV
Sbjct: 44  NKELNQMIRSGYIAEARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMPKRDVV 103

Query: 314 ACNAMMGGYVRNG---YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
             N M+ GYV  G   +  +A ++FD M                                
Sbjct: 104 TWNTMISGYVSCGGIRFLEEARKLFDEMP------------------------------- 132

Query: 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
                +D FS N      +I  Y+K   I  A+ +FE++ + +   W+AMI G   +G  
Sbjct: 133 ----SRDSFSWN-----TMISGYAKNRRIGEALLLFEKMPERNAVSWSAMITGFCQNGEV 183

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
           + A  L  +M      P      GL+    +  L +   +  +    +   E  +  Y  
Sbjct: 184 DSAVVLFRKMPVKDSSPLCALVAGLIK---NERLSEAAWVLGQYGSLVSGREDLVYAYNT 240

Query: 491 MVDILGRAGHIEAARNLIEDMP 512
           ++   G+ G +EAAR L + +P
Sbjct: 241 LIVGYGQRGQVEAARCLFDQIP 262



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 130/268 (48%), Gaps = 19/268 (7%)

Query: 44  KNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEA 103
           ++ H    +V+ ++S       E AR+ F K      +K    WN+II  Y    D KEA
Sbjct: 341 RDAHSWNMMVSGYAS---VGNVELARHYFEK----TPEKHTVSWNSIIAAYEKNKDYKEA 393

Query: 104 LVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISL 163
           + +F  M   G   D  + + +L A + L  +  G+Q+H ++ K     D+ + N LI++
Sbjct: 394 VDLFIRMNIEGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKTVI-PDVPVHNALITM 452

Query: 164 YVRCGYLEFARQLFDKMGI-RDSVSYNSMIDGYVKSGNIESARELFDSMPIRE--RNLIS 220
           Y RCG +  +R++FD+M + R+ +++N+MI GY   GN   A  LF SM       + I+
Sbjct: 453 YSRCGEIMESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHIT 512

Query: 221 WNSVLNGYAQL----KSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM 276
           + SVLN  A      ++  QF   +     E  +  ++S+++     G+ ++A  +   M
Sbjct: 513 FVSVLNACAHAGLVDEAKAQFVSMMSVYKIEPQMEHYSSLVNVTSGQGQFEEAMYIITSM 572

Query: 277 P-KRDVVSWANMIDG---YAKLGRVDIA 300
           P + D   W  ++D    Y  +G   +A
Sbjct: 573 PFEPDKTVWGALLDACRIYNNVGLAHVA 600



 Score = 42.7 bits (99), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 38/196 (19%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           Q+H  ++ T  I +  +   L+  +S   C  + E +R IF      + K++   WNA+I
Sbjct: 430 QMHQIVVKT-VIPDVPVHNALITMYSR--CGEIME-SRRIF---DEMKLKREVITWNAMI 482

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
             Y+   +  EAL +F  M  NG+     +   VL AC+  GL++E         K  F 
Sbjct: 483 GGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVDEA--------KAQFV 534

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
           S       ++S+Y     +E                Y+S+++     G  E A  +  SM
Sbjct: 535 S-------MMSVYKIEPQMEH---------------YSSLVNVTSGQGQFEEAMYIITSM 572

Query: 212 PIRERNLISWNSVLNG 227
           P  E +   W ++L+ 
Sbjct: 573 PF-EPDKTVWGALLDA 587


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 147/359 (40%), Positives = 231/359 (64%), Gaps = 4/359 (1%)

Query: 264 GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV 323
           G++ DA  L       D  ++  +I  +A+ GRV  AR LFDEMP+R+ V+ +AM+ GYV
Sbjct: 142 GRLADAHLLLRTSAAVDASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYV 201

Query: 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG 383
           + G   +AL +F  MQ +  + PDD  LV VL+A AQLG +++G  +H YL+ +   +  
Sbjct: 202 QAGDGREALGVFSQMQAQ-GVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTV 260

Query: 384 KHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
             G AL+DMY+KCG ++  ++VFE ++D +V  W  MI GLA+HG G  +  L  +ME  
Sbjct: 261 FLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESS 320

Query: 444 SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503
            ++PDDI F G L AC H GLV +G   F  M   + ++P+++HYGCMVD+L R G +  
Sbjct: 321 GVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSE 380

Query: 504 ARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563
           AR+++E MPM+P+ +IW  L++ CR ++N+ + E V KH I ++   S +YVLL N+++ 
Sbjct: 381 ARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVIKHWIELEPDKSGAYVLLGNIYSA 440

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI---YYMLDN 619
            G    AR +R++M+E+ ++K PGCS +E++GV+H+F V D S  +++DI   +Y +D+
Sbjct: 441 SGRHASAREIRNLMREKGVEKTPGCSNVEIKGVIHQFIVGDLSHPRIKDILTKWYEIDS 499



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 136/305 (44%), Gaps = 43/305 (14%)

Query: 28  NDVNQIHARMITTGFIKNTHLTTKLVASFSSSPC-TPLTEFARY--IFFKYHAFRE--KK 82
           N + ++HA ++  G + + HL  +  A+  +S   T +T  AR   +      F E  ++
Sbjct: 131 NALIRVHAGLL--GRLADAHLLLRTSAAVDASTFNTLITAHARAGRVADARSLFDEMPER 188

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           +   W+A++  Y    D +EAL +F  M   GV  D      VL AC++LG +E+G  +H
Sbjct: 189 NAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWVH 248

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
           G L+       +FL   L+ +Y +CG ++   ++F+ M  ++ +++ +MI G    G   
Sbjct: 249 GYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGS 308

Query: 203 SARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVK 262
            +  LF  M                     SG++            D I++   L  C  
Sbjct: 309 DSLTLFSQME-------------------SSGVK-----------PDDIAFIGALCACTH 338

Query: 263 CGKMDDAQALFDKMP-----KRDVVSWANMIDGYAKLGRVDIARRLFDEMP-KRDVVACN 316
            G +D  + LF+ M      K  +  +  M+D  A+ G +  AR + ++MP K D +   
Sbjct: 339 TGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWG 398

Query: 317 AMMGG 321
           A+M G
Sbjct: 399 ALMAG 403


>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
 gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 187/507 (36%), Positives = 278/507 (54%), Gaps = 47/507 (9%)

Query: 127 KACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSV 186
           K    L  I   + ++GL+  ++   +L       SL V  G L++A +LFD++   D  
Sbjct: 23  KNIRTLKQIHASMVVNGLMSNLSVVGELIYS---ASLSVP-GALKYAHKLFDEIPKPDVS 78

Query: 187 SYNSMIDGYVKSGNIESARELFDSMPIR----ER----------NLISWNS--------- 223
             N ++ G  +S   E    L+  M  R    +R          + + W S         
Sbjct: 79  ICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKV 138

Query: 224 -----VLNGYAQLK--------SGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQ 270
                VLN Y +            L  A ++F+   +   ++W+SM  G  K GK+D+A 
Sbjct: 139 VRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAM 198

Query: 271 ALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMK 330
            LFD+MP +D V+W  MI G  K   +D AR LFD   ++DVV  NAM+ GYV  GY  +
Sbjct: 199 RLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKE 258

Query: 331 ALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY-LEKDQFSLNGKHGV-- 387
           AL IF  M+ +   HPD  +++ +LSA A LG ++ G  +H Y LE    S +   G   
Sbjct: 259 ALGIFKEMR-DAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPI 317

Query: 388 --ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
             ALIDMY+KCGSI+ AI+VF  ++D  +  WN +I GLA+H   E + ++  EM+RL +
Sbjct: 318 WNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALHH-AEGSIEMFEEMQRLKV 376

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR 505
            P+++TF G++ AC+H+G V EG   F LMR ++ +EP ++HYGCMVD+LGRAG +E A 
Sbjct: 377 WPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAF 436

Query: 506 NLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565
             +E M +EPN ++WRTLL AC+ Y N+ +G+   + L+ M    S  YVLLSN++A  G
Sbjct: 437 MFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTG 496

Query: 566 MWNDARRVRSMMKERNLKKLPGCSWIE 592
            W+  ++VR M  +  +KK  G S IE
Sbjct: 497 QWDGVQKVRKMFDDTRVKKPTGVSLIE 523



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 145/538 (26%), Positives = 250/538 (46%), Gaps = 92/538 (17%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           L + CK +  + QIHA M+  G + N  +  +L+ S S S    L ++A  +F +     
Sbjct: 18  LWQNCKNIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGAL-KYAHKLFDEI---- 72

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
            K D  + N +++  +  + P++ + ++  M   GVS D+++ + VLKACS+L     G 
Sbjct: 73  PKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGF 132

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
             HG + +  F  + +++N LI  +  CG L  A +LFD       V+++SM  GY K G
Sbjct: 133 AFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRG 192

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG 259
            I+ A  LFD MP +++  ++WN ++ G  + K  +  A ++F++  E+D+++WN+M+ G
Sbjct: 193 KIDEAMRLFDEMPYKDQ--VAWNVMITGCLKCKE-MDSARELFDRFTEKDVVTWNAMISG 249

Query: 260 CVKCGKMDDAQALFDKM----PKRDVVS-------------------------------- 283
            V CG   +A  +F +M       DVV+                                
Sbjct: 250 YVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSS 309

Query: 284 --------WANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
                   W  +ID YAK G +D A  +F  +  RD+   N ++ G   + ++  ++E+F
Sbjct: 310 SIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMF 368

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
           + MQ  L + P++ + + V+ A +  G +D+G        +  FSL       + DMY  
Sbjct: 369 EEMQ-RLKVWPNEVTFIGVILACSHSGRVDEG--------RKYFSL-------MRDMY-- 410

Query: 396 CGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGL 455
             +IE  IK           H+  M++ L   G  E AF   M +E + IEP+ I +  L
Sbjct: 411 --NIEPNIK-----------HYGCMVDMLGRAGQLEEAF---MFVESMKIEPNAIVWRTL 454

Query: 456 LNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH---IEAARNLIED 510
           L AC   G V+ G    E +  + K   E   Y  + +I    G    ++  R + +D
Sbjct: 455 LGACKIYGNVELGKYANEKLLSMRK--DESGDYVLLSNIYASTGQWDGVQKVRKMFDD 510


>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Glycine max]
          Length = 723

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 199/617 (32%), Positives = 307/617 (49%), Gaps = 23/617 (3%)

Query: 16  STLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           S LL     K+L+   Q+HA++I+ G  +N  L ++LV  +++       +F        
Sbjct: 86  SLLLACTHFKSLSQGKQLHAQVISLGLDQNPILVSRLVNFYTNVNLLVDAQFVT------ 139

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
                  DP  WN +I  Y       EAL ++  ML+  +  D+++   VLKAC      
Sbjct: 140 -ESSNTLDPLHWNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDF 198

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
             GL++H  +   +    LF+ N L+S+Y R G LE AR LFD M  RDSVS+N++I  Y
Sbjct: 199 NSGLEVHRSIEASSMEWSLFVHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCY 258

Query: 196 VKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERD--- 249
              G  + A +LF SM     E N+I WN++  G   L SG  + A Q+  +M       
Sbjct: 259 ASRGIWKEAFQLFGSMQEEGVEMNVIIWNTIAGGC--LHSGNFRGALQLISQMRTSIHLD 316

Query: 250 ----LISWNSMLH-GCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304
               ++  N+  H G +K GK     A+       D V  A +I  Y++   +  A  LF
Sbjct: 317 AIAMVVGLNACSHIGAIKLGKEIHGHAVRTCFDVFDNVKNA-LITMYSRCRDLGHAFILF 375

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
               ++ ++  NAM+ GY       +   +F  M  E  + P+  ++  VL   A++ ++
Sbjct: 376 HRTEEKGLITWNAMLSGYAHMDRYEEVTFLFREMLQE-GMEPNYVTIASVLPLCARIANL 434

Query: 365 DKGVAIHRYLEK-DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
             G   H Y+ K  QF        AL+DMYS+ G +  A KVF+ +       + +MI G
Sbjct: 435 QHGKEFHCYIMKHKQFEEYLLLWNALVDMYSRSGRVLEARKVFDSLTKRDEVTYTSMILG 494

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
             + G GE    L  EM +L I+PD +T   +L AC+H+GLV +G + F+ M  +H + P
Sbjct: 495 YGMKGEGETTLKLFEEMCKLEIKPDHVTMVAVLTACSHSGLVAQGQVLFKRMIDVHGIVP 554

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543
            L+HY CM D+ GRAG +  A+  I  MP +P   +W TLL ACR + N  +GE  A  L
Sbjct: 555 RLEHYACMADLFGRAGLLNKAKEFITGMPYKPTSAMWATLLGACRIHGNTEMGEWAAGKL 614

Query: 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVR 603
           + M   +S  YVL++NM+A  G W     VR+ M+   ++K PGC+W+++      F V 
Sbjct: 615 LEMKPDHSGYYVLIANMYAAAGSWRKLAEVRTYMRNLGVRKAPGCAWVDVGSEFSPFLVG 674

Query: 604 DKSRLQVRDIYYMLDNM 620
           D S     +IY ++D +
Sbjct: 675 DSSNPHASEIYPLMDGL 691


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 196/621 (31%), Positives = 320/621 (51%), Gaps = 51/621 (8%)

Query: 21  LRKCKT---LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
            R C     LN   Q+HA  I   F  +  + T +V  ++ +    LT+ AR  FF    
Sbjct: 257 FRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKA--NSLTD-ARRAFFGLPN 313

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
              +    +   +++    GL   EA+ +F  M+ + +  D  S S V  AC+      +
Sbjct: 314 HTVETSNAMMVGLVRA---GLG-IEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQ 369

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G Q+H L  K  F  D+ + N ++ LY +C  L  A  +F  M  +DSVS+N++I    +
Sbjct: 370 GQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQ 429

Query: 198 SGNIESARELFDSMPIR---ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN 254
           +G+ +     F+ M +R   + +  ++ SVL   A L+S L++   + +K+ +  L S  
Sbjct: 430 NGHYDDTILHFNEM-LRFGMKPDDFTYGSVLKACAALRS-LEYGLMVHDKVIKSGLGS-- 485

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
                                    D    + ++D Y K G +D A++L D +  + VV+
Sbjct: 486 -------------------------DAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVS 520

Query: 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
            NA++ G+  N  S +A + F  M  ++ L PD  +   VL   A L  I+ G  IH  +
Sbjct: 521 WNAILSGFSLNKESEEAQKFFSEM-LDMGLKPDHFTFATVLDTCANLATIELGKQIHGQI 579

Query: 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
            K +   +      L+DMY+KCG + +++ VFE++E      WNAMI G A+HGLG  A 
Sbjct: 580 IKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEAL 639

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
            +   M++ ++ P+  TF  +L AC+H GL  +G   F LM   +KLEP+L+H+ CMVDI
Sbjct: 640 RMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDI 699

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           LGR+   + A   I  MP + + VIW+TLLS C+  +++ + E  A +++ +D  +SS Y
Sbjct: 700 LGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVY 759

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           +LLSN++A  G W D  R R ++K+  LKK PGCSWIE++  +H F V DK+  +  ++Y
Sbjct: 760 ILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMHGFLVGDKAHPRSGELY 819

Query: 615 YMLDNM--------WTPDSVA 627
            ML+++        + PDS +
Sbjct: 820 EMLNDLIGEMKLSGYEPDSAS 840



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 145/557 (26%), Positives = 256/557 (45%), Gaps = 62/557 (11%)

Query: 115 VSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKV--AFGSDLFLQNCLISLYVRCGYLEF 172
           V+  + + S V ++C++ G            R V   F    F+ NCL+ +Y RC     
Sbjct: 11  VAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAGAAC 70

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK 232
           AR++FD M  RD+VS+N+M+  Y  +G+I +A  LFD MP  + +++SWN++++GY Q +
Sbjct: 71  ARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMP--DPDVVSWNALVSGYCQ-R 127

Query: 233 SGLQFAWQIFEKMPER----DLISWNSMLHGCVKCGKMD---DAQALFDKMP-KRDVVSW 284
              Q +  +F +M  R    D  ++  +L  C    ++       AL  K   + DV + 
Sbjct: 128 GMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTG 187

Query: 285 ANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYL 344
           + ++D Y K   +D A   F  MP+R+ V+  A + G V+N   ++ LE+F  MQ  L L
Sbjct: 188 SALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQ-RLGL 246

Query: 345 HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIK 404
                S      + A +  ++ G  +H +  K++FS +   G A++D+Y+K  S+ +A +
Sbjct: 247 GVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARR 306

Query: 405 VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA---- 460
            F  + + +V+  NAM+ GL   GLG  A  L   M R SI  D ++ +G+ +ACA    
Sbjct: 307 AFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKG 366

Query: 461 -------HAGLVKEGL---------------LCFELMRRIHKLEPELQH----YGCMVDI 494
                  H   +K G                 C  LM      +   Q     +  ++  
Sbjct: 367 YFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAA 426

Query: 495 LGRAGHIEAARNLIEDM---PMEPNDVIWRTLLSACRNYENLNVG----EPVAKHLIGMD 547
           L + GH +       +M    M+P+D  + ++L AC    +L  G    + V K  +G D
Sbjct: 427 LEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSD 486

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
           +  +S+ V   +M+   G+ ++A+++          ++ G   +    ++  F +  +S 
Sbjct: 487 AFVASTVV---DMYCKCGIIDEAQKLHD--------RIGGQQVVSWNAILSGFSLNKESE 535

Query: 608 LQVRDIYYMLDNMWTPD 624
              +    MLD    PD
Sbjct: 536 EAQKFFSEMLDMGLKPD 552



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 150/591 (25%), Positives = 254/591 (42%), Gaps = 74/591 (12%)

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           D   WNA++  Y      +E++ +F  M   GVS D+ + +++LK+CS L  +  G+Q+H
Sbjct: 113 DVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVH 172

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
            L  K     D+   + L+ +Y +C  L+ A   F  M  R+ VS+ + I G V++    
Sbjct: 173 ALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYV 232

Query: 203 SARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVK 262
              ELF          I    +  G +Q      F              S  +M   C+ 
Sbjct: 233 RGLELF----------IEMQRLGLGVSQPSYASAFR-------------SCAAM--SCLN 267

Query: 263 CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGY 322
            G+   A A+ +K     VV  A ++D YAK   +  ARR F  +P   V   NAMM G 
Sbjct: 268 TGRQLHAHAIKNKFSSDRVVGTA-IVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL 326

Query: 323 VRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN 382
           VR G  ++A+ +F  M     +  D  SL  V SA A+     +G  +H    K  F ++
Sbjct: 327 VRAGLGIEAMGLFQFM-IRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVD 385

Query: 383 GKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMER 442
                A++D+Y KC ++  A  +F+ ++      WNA+I  L  +G  +       EM R
Sbjct: 386 ICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLR 445

Query: 443 LSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIE 502
             ++PDD T+  +L ACA    ++ GL+  + + +   L  +      +VD+  + G I+
Sbjct: 446 FGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIK-SGLGSDAFVASTVVDMYCKCGIID 504

Query: 503 AARNLIE----------------------------------DMPMEPNDVIWRTLLSACR 528
            A+ L +                                  DM ++P+   + T+L  C 
Sbjct: 505 EAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCA 564

Query: 529 NYENLNVGEPVAKHLIG---MDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKL 585
           N   + +G+ +   +I    +D    SS   L +M+A  G   D+  V   +++R+    
Sbjct: 565 NLATIELGKQIHGQIIKQEMLDDEYISS--TLVDMYAKCGDMPDSLLVFEKVEKRDFVSW 622

Query: 586 PG--CSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVATSCTHYG 634
               C +  L G+  E  +R   R+Q  ++   + N  T  +V  +C+H G
Sbjct: 623 NAMICGY-ALHGLGVE-ALRMFERMQKENV---VPNHATFVAVLRACSHVG 668


>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 670

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 205/619 (33%), Positives = 315/619 (50%), Gaps = 49/619 (7%)

Query: 8   NQPCNSTQSTLL-LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTE 66
           N+  +S +  LL  +++C  L    QIHA+++ +  + N  + TK  A+F     T +  
Sbjct: 77  NKGTHSMKWVLLDFIQRCNDLRSFKQIHAQLLRSTLVDNDLVVTK-AANFFGKHVTDI-- 133

Query: 67  FARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVL 126
             RY       F      F  N II  Y  G  P  A+ ++  ++ NG   D ++   VL
Sbjct: 134 --RYPCNFLKQFDWSFSSFPCNLIISGYGAGNFPWAAIRIYRWVVGNGFVPDVYTVPAVL 191

Query: 127 KACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSV 186
           K+C+R   I E  QIH L  K     D+F+QN  + +Y  CG         D +G     
Sbjct: 192 KSCARFSGIAEVKQIHTLAVKTDLWCDMFVQNSFVHVYSICG---------DTVG----- 237

Query: 187 SYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKM 245
                            A ++FD MP+R+  ++SW  +++GY  +K+GL   A  +F +M
Sbjct: 238 -----------------ASKVFDFMPVRD--VVSWTGLISGY--MKAGLFNDAVALFLRM 276

Query: 246 P-ERDLISWNSMLHGCVKCGKMD---DAQALFDKMPK-RDVVSWANMIDGYAKLGRVDIA 300
               +  ++ S+L  C K G ++       L  K P  +++V    ++D Y K   V  A
Sbjct: 277 DVAPNAATFVSILGACGKLGCLNLGKGIHGLVSKYPHGKELVVSNTLMDMYVKCESVTDA 336

Query: 301 RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360
           +RLFDE+P++D+V+  +M+ G V+     ++L++F  M    +  PD   L  VLSA A 
Sbjct: 337 KRLFDEIPEKDIVSWTSMISGLVQYQCPQESLDLFYEMLGSGF-EPDGVILTSVLSACAS 395

Query: 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAM 420
           LG +D G  +H Y++  +   +   G +LIDMY+KCG IE A ++F  +   ++  WNA 
Sbjct: 396 LGLLDYGRWVHEYIDHSRIKWDVHIGTSLIDMYAKCGCIEMAQQMFNLLPSKNIRTWNAY 455

Query: 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRI-H 479
           I GLAI+G G+ A      +      P++ITF  + +AC H+GLV EG   F+ M    +
Sbjct: 456 IGGLAINGHGQEALKQFGYLVESGTRPNEITFLAVFSACCHSGLVDEGRSYFKQMTSPPY 515

Query: 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPV 539
            L P L+HYGCMVD+L RA  +E A  LI  MPM P+  I   LLSA   Y N+ +   +
Sbjct: 516 NLSPWLEHYGCMVDLLCRAELVEEAMELINKMPMPPDVQIIGALLSASSTYGNVELTPEM 575

Query: 540 AKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHE 599
            K +   +   S  YVLLSN +A    W + R VR +MKE+ + K PG S I ++G  H+
Sbjct: 576 LKTVRNFECQESGVYVLLSNWYANNKKWAEVRSVRRLMKEKGISKAPGSSLIRVDGKSHK 635

Query: 600 FFVRDKSRLQVRDIYYMLD 618
           F V D +  Q  DI+ +L+
Sbjct: 636 FVVGDNNHPQSEDIHVLLN 654


>gi|357480561|ref|XP_003610566.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511621|gb|AES92763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 598

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 191/601 (31%), Positives = 310/601 (51%), Gaps = 68/601 (11%)

Query: 14  TQSTLLLLRKCKTLNDVNQI-HARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           T ST  +L   + LN+   I H + I   F+K  HL              P   F R +F
Sbjct: 4   TTSTFFILPLNQFLNNAKNISHLKQIHALFLK--HLPQN----------APHHFFDRLLF 51

Query: 73  FKYHAFREKKD-----------P-----FLWNAIIKTY-SHGLDPKEALVMFCLMLDNGV 115
              H   EK +           P     F+W ++I+ + SH    +  +  F +M   G+
Sbjct: 52  RVLHFSAEKSNLYYAHKLFDTMPNCSNCFIWTSLIRAFLSHHTHFRHCISTFAIMHQKGI 111

Query: 116 SVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQ 175
               F+ S VL AC R+  + EG Q+H  L +  F  +  +Q  L+ +Y +C        
Sbjct: 112 LPSGFTFSSVLNACGRVPAVFEGKQVHARLVQSGFLGNKIVQTALLDMYAKC-------- 163

Query: 176 LFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL 235
                                  G +  AR++FD M   +R++++W +++ GYA  K+G 
Sbjct: 164 -----------------------GYVCDARDVFDGMV--DRDVVAWTAMICGYA--KAGR 196

Query: 236 QF-AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKL 294
              A  +F+ M ER+  +W +M+ G    G M  A  L+D M  ++ V+W  MI GY KL
Sbjct: 197 MVDARLLFDNMGERNSFTWTTMVAGYANYGDMKAAMELYDVMNGKEEVTWVAMIAGYGKL 256

Query: 295 GRVDIARRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI 353
           G V  ARR+FDE+P   +   C A++  Y +NG++ +A+E+++ M+    +   D ++V 
Sbjct: 257 GNVSEARRIFDEIPVPLNPSTCAALLACYAQNGHAREAIEMYEKMR-RAKIKVTDVAMVG 315

Query: 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
            +SA AQL  I     +   +E+           ALI M SKCG+I+ A + F  + +  
Sbjct: 316 AISACAQLRDIRMSNLLTYDIEEGFCEKTHIVSNALIHMQSKCGNIDLAWREFNIMRNRD 375

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE 473
           +  ++AMI   A HG  + A DL ++M++  + P+ +TF G+LNAC+ +GL++EG   F+
Sbjct: 376 LYTYSAMIAAFAEHGKSQDAIDLFLKMQQEGLTPNQVTFVGVLNACSTSGLIEEGCRFFQ 435

Query: 474 LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENL 533
           +M  ++ +EP  +HY CMVD+LGRAG +E A +LI++     +   W +LL+ACR Y N+
Sbjct: 436 IMTGVYGIEPLPEHYTCMVDLLGRAGQLEKAYSLIKENSTSADATTWGSLLAACRVYGNV 495

Query: 534 NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIEL 593
            +GE  A+HL  +D ++S +YVLL+N +A    W  A  V+ +M ++ +KK  G SWI+ 
Sbjct: 496 ELGEIAARHLFEIDPTDSGNYVLLANTYASNDKWERAEEVKKLMSKKGMKKPSGYSWIQR 555

Query: 594 E 594
           E
Sbjct: 556 E 556


>gi|115476154|ref|NP_001061673.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|27260973|dbj|BAC45090.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|40253357|dbj|BAD05289.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113623642|dbj|BAF23587.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|215715200|dbj|BAG94951.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 696

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 209/679 (30%), Positives = 327/679 (48%), Gaps = 91/679 (13%)

Query: 34  HARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKT 93
           HA ++ +G    T     L A   SSP       AR +F +      ++D   WNA++  
Sbjct: 14  HASLLKSGVAAPTPWNQLLTAYSRSSPDG--LAAARRVFDEV----PRRDEVSWNALLAA 67

Query: 94  YSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSD 153
            +      EA  +   M   G++ + F+    L++ +       G Q+  L  K    ++
Sbjct: 68  QAASGAHPEAWRLLRAMHAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANN 127

Query: 154 LFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPI 213
           +F  + L+ +Y +CG +  ARQ+FD M  R++VS+N++I GY +SG++ SA ELF  M  
Sbjct: 128 VFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEME- 186

Query: 214 RER-------------------------------------NLISWNSVLNGYAQLKSGLQ 236
           RE                                       L   N+ +  Y+Q  S L+
Sbjct: 187 REGLAPDEATFASLLTAVEGPSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGS-LK 245

Query: 237 FAWQIFEKMPE-RDLISWNSMLHGCVKCGKMDDAQALFDKMPKR-----DVVSWANMIDG 290
            + +IF+ + + RDLISWN+ML      G  D+A   F +M +      D+ S+ ++I  
Sbjct: 246 DSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISS 305

Query: 291 YAKLGRVDIARRL---------------------------------------FDEMPKRD 311
            ++ G  D   R+                                       F+ +  +D
Sbjct: 306 CSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKD 365

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
            V+ N+M+ GY ++G S  AL+ F  M C   +  D+ +    L + ++L  +  G  IH
Sbjct: 366 TVSWNSMLTGYSQHGLSADALKFFRCM-CSENVRTDEYAFSAALRSSSELAVLQLGKQIH 424

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
             +    F+ N     +LI MYSK G I++A K FE+ +  S   WNAMI G A HG  E
Sbjct: 425 GLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQHGQAE 484

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
               L  EM +     D ITF GL+ +C+HAGLV EG      M   + +   ++HY C 
Sbjct: 485 NVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACG 544

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551
           VD+ GRAG ++ A+ LI+ MP EP+ ++W TLL ACR + N+ +   VA HL   +    
Sbjct: 545 VDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQH 604

Query: 552 SSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVR 611
           S+YVLLS+M++GLGMW+D   V+ +MK+R L K+PG SWIE++  VH F   DKS  ++ 
Sbjct: 605 STYVLLSSMYSGLGMWSDRATVQRVMKKRGLSKVPGWSWIEVKNEVHSFNAEDKSHPKMD 664

Query: 612 DIYYMLDNMWTPDSVATSC 630
           +IY ML  +   + + ++C
Sbjct: 665 EIYEMLRVLLQVEQMLSNC 683



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 100/203 (49%), Gaps = 15/203 (7%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           QIH  +I +GF  N  +++ L+  +S S    + + AR  F +     +K     WNA+I
Sbjct: 422 QIHGLVIHSGFASNDFVSSSLIFMYSKSG---IIDDARKSFEE----ADKSSSVPWNAMI 474

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
             Y+     +   ++F  ML     +D  +   ++ +CS  GL++EG +I   + +  +G
Sbjct: 475 FGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTM-ETKYG 533

Query: 152 SDLFLQN--CLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMIDGYVKSGNIESARE-- 206
             L +++  C + LY R G L+ A++L D M    D++ + +++      GN+E A +  
Sbjct: 534 VPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVA 593

Query: 207 --LFDSMPIRERNLISWNSVLNG 227
             LF + P +    +  +S+ +G
Sbjct: 594 SHLFVAEPRQHSTYVLLSSMYSG 616


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 193/622 (31%), Positives = 318/622 (51%), Gaps = 53/622 (8%)

Query: 21  LRKCKT---LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
            R C     LN   Q+HA  I   F  +  + T +V  ++ +    LT+ AR  FF    
Sbjct: 299 FRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKA--NSLTD-ARRAFFGLPN 355

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
              +    +   +++    GL   EA+ +F  M+ + +  D  S S V  AC+      +
Sbjct: 356 HTVETSNAMMVGLVRA---GLG-IEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQ 411

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G Q+H L  K  F  D+ + N ++ LY +C  L  A  +F  M  +DSVS+N++I    +
Sbjct: 412 GQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQ 471

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257
           +G+ +                   +++L+    L+ G++            D  ++ S+L
Sbjct: 472 NGHYD-------------------DTILHFNEMLRFGMK-----------PDDFTYGSVL 501

Query: 258 HGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
             C     ++    + DK+ K     D    + ++D Y K G +D A++L D +  + VV
Sbjct: 502 KACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVV 561

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
           + NA++ G+  N  S +A + F  M  ++ L PD  +   VL   A L  I+ G  IH  
Sbjct: 562 SWNAILSGFSLNKESEEAQKFFSEM-LDMGLKPDHFTFATVLDTCANLATIELGKQIHGQ 620

Query: 374 LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
           + K +   +      L+DMY+KCG + +++ VFE++E      WNAMI G A+HGLG  A
Sbjct: 621 IIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEA 680

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493
             +   M++ ++ P+  TF  +L AC+H GL  +G   F LM   +KLEP+L+H+ CMVD
Sbjct: 681 LRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVD 740

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS 553
           ILGR+   + A   I  MP + + VIW+TLLS C+  +++ + E  A +++ +D  +SS 
Sbjct: 741 ILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSV 800

Query: 554 YVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDI 613
           Y+LLSN++A  G W D  R R ++K+  LKK PGCSWIE++  +H F V DK+  +  ++
Sbjct: 801 YILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMHGFLVGDKAHPRSGEL 860

Query: 614 YYMLDNM--------WTPDSVA 627
           Y ML+++        + PDS +
Sbjct: 861 YEMLNDLIGEMKLSGYEPDSAS 882



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 145/557 (26%), Positives = 256/557 (45%), Gaps = 62/557 (11%)

Query: 115 VSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKV--AFGSDLFLQNCLISLYVRCGYLEF 172
           V+  + + S V ++C++ G            R V   F    F+ NCL+ +Y RC     
Sbjct: 53  VAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAGAAC 112

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK 232
           AR++FD M  RD+VS+N+M+  Y  +G+I +A  LFD MP  + +++SWN++++GY Q +
Sbjct: 113 ARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMP--DPDVVSWNALVSGYCQ-R 169

Query: 233 SGLQFAWQIFEKMPER----DLISWNSMLHGCVKCGKMD---DAQALFDKMP-KRDVVSW 284
              Q +  +F +M  R    D  ++  +L  C    ++       AL  K   + DV + 
Sbjct: 170 GMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTG 229

Query: 285 ANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYL 344
           + ++D Y K   +D A   F  MP+R+ V+  A + G V+N   ++ LE+F  MQ  L L
Sbjct: 230 SALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQ-RLGL 288

Query: 345 HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIK 404
                S      + A +  ++ G  +H +  K++FS +   G A++D+Y+K  S+ +A +
Sbjct: 289 GVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARR 348

Query: 405 VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA---- 460
            F  + + +V+  NAM+ GL   GLG  A  L   M R SI  D ++ +G+ +ACA    
Sbjct: 349 AFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKG 408

Query: 461 -------HAGLVKEGL---------------LCFELMRRIHKLEPELQH----YGCMVDI 494
                  H   +K G                 C  LM      +   Q     +  ++  
Sbjct: 409 YFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAA 468

Query: 495 LGRAGHIEAARNLIEDM---PMEPNDVIWRTLLSACRNYENLNVG----EPVAKHLIGMD 547
           L + GH +       +M    M+P+D  + ++L AC    +L  G    + V K  +G D
Sbjct: 469 LEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSD 528

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
           +  +S+ V   +M+   G+ ++A+++          ++ G   +    ++  F +  +S 
Sbjct: 529 AFVASTVV---DMYCKCGIIDEAQKLHD--------RIGGQQVVSWNAILSGFSLNKESE 577

Query: 608 LQVRDIYYMLDNMWTPD 624
              +    MLD    PD
Sbjct: 578 EAQKFFSEMLDMGLKPD 594



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 150/591 (25%), Positives = 254/591 (42%), Gaps = 74/591 (12%)

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           D   WNA++  Y      +E++ +F  M   GVS D+ + +++LK+CS L  +  G+Q+H
Sbjct: 155 DVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVH 214

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
            L  K     D+   + L+ +Y +C  L+ A   F  M  R+ VS+ + I G V++    
Sbjct: 215 ALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYV 274

Query: 203 SARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVK 262
              ELF          I    +  G +Q      F              S  +M   C+ 
Sbjct: 275 RGLELF----------IEMQRLGLGVSQPSYASAFR-------------SCAAM--SCLN 309

Query: 263 CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGY 322
            G+   A A+ +K     VV  A ++D YAK   +  ARR F  +P   V   NAMM G 
Sbjct: 310 TGRQLHAHAIKNKFSSDRVVGTA-IVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL 368

Query: 323 VRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN 382
           VR G  ++A+ +F  M     +  D  SL  V SA A+     +G  +H    K  F ++
Sbjct: 369 VRAGLGIEAMGLFQFM-IRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVD 427

Query: 383 GKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMER 442
                A++D+Y KC ++  A  +F+ ++      WNA+I  L  +G  +       EM R
Sbjct: 428 ICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLR 487

Query: 443 LSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIE 502
             ++PDD T+  +L ACA    ++ GL+  + + +   L  +      +VD+  + G I+
Sbjct: 488 FGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIK-SGLGSDAFVASTVVDMYCKCGIID 546

Query: 503 AARNLIE----------------------------------DMPMEPNDVIWRTLLSACR 528
            A+ L +                                  DM ++P+   + T+L  C 
Sbjct: 547 EAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCA 606

Query: 529 NYENLNVGEPVAKHLIG---MDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKL 585
           N   + +G+ +   +I    +D    SS   L +M+A  G   D+  V   +++R+    
Sbjct: 607 NLATIELGKQIHGQIIKQEMLDDEYISS--TLVDMYAKCGDMPDSLLVFEKVEKRDFVSW 664

Query: 586 PG--CSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVATSCTHYG 634
               C +  L G+  E  +R   R+Q  ++   + N  T  +V  +C+H G
Sbjct: 665 NAMICGY-ALHGLGVE-ALRMFERMQKENV---VPNHATFVAVLRACSHVG 710


>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
          Length = 514

 Score =  303 bits (777), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 178/466 (38%), Positives = 262/466 (56%), Gaps = 43/466 (9%)

Query: 168 GYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR----ER------- 216
           G L++A +LFD++   D    N ++ G  +S   E    L+  M  R    +R       
Sbjct: 26  GALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVL 85

Query: 217 ---NLISWNS--------------VLNGYAQLK--------SGLQFAWQIFEKMPERDLI 251
              + + W S              VLN Y +            L  A ++F+   +   +
Sbjct: 86  KACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKV 145

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           +W+SM  G  K GK+D+A  LFD+MP +D V+W  MI G  K   +D AR LFD   ++D
Sbjct: 146 AWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKD 205

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           VV  NAM+ GYV  GY  +AL IF  M+ +   HPD  +++ +LSA A LG ++ G  +H
Sbjct: 206 VVTWNAMISGYVNCGYPKEALGIFKEMR-DAGEHPDVVTILSLLSACAVLGDLETGKRLH 264

Query: 372 RY-LEKDQFSLNGKHGV----ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
            Y LE    S +   G     ALIDMY+KCGSI+ AI+VF  ++D  +  WN +I GLA+
Sbjct: 265 IYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLAL 324

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           H   E + ++  EM+RL + P+++TF G++ AC+H+G V EG   F LMR ++ +EP ++
Sbjct: 325 HH-AEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIK 383

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HYGCMVD+LGRAG +E A   +E M +EPN ++WRTLL AC+ Y N+ +G+   + L+ M
Sbjct: 384 HYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSM 443

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
               S  YVLLSN++A  G W+  ++VR M  +  +KK  G S IE
Sbjct: 444 RKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIE 489



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 138/521 (26%), Positives = 240/521 (46%), Gaps = 92/521 (17%)

Query: 37  MITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSH 96
           M+  G + N  +  +L+ S S S    L ++A  +F +      K D  + N +++  + 
Sbjct: 1   MVVNGLMSNLSVVGELIYSASLSVPGAL-KYAHKLFDEI----PKPDVSICNHVLRGSAQ 55

Query: 97  GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFL 156
            + P++ + ++  M   GVS D+++ + VLKACS+L     G   HG + +  F  + ++
Sbjct: 56  SMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYV 115

Query: 157 QNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRER 216
           +N LI  +  CG L  A +LFD       V+++SM  GY K G I+ A  LFD MP +++
Sbjct: 116 KNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQ 175

Query: 217 NLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM 276
             ++WN ++ G  + K  +  A ++F++  E+D+++WN+M+ G V CG   +A  +F +M
Sbjct: 176 --VAWNVMITGCLKCKE-MDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEM 232

Query: 277 ----PKRDVVS----------------------------------------WANMIDGYA 292
                  DVV+                                        W  +ID YA
Sbjct: 233 RDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYA 292

Query: 293 KLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLV 352
           K G +D A  +F  +  RD+   N ++ G   + ++  ++E+F+ MQ  L + P++ + +
Sbjct: 293 KCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQ-RLKVWPNEVTFI 350

Query: 353 IVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG 412
            V+ A +  G +D+G        +  FSL       + DMY    +IE  IK        
Sbjct: 351 GVILACSHSGRVDEG--------RKYFSL-------MRDMY----NIEPNIK-------- 383

Query: 413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCF 472
              H+  M++ L   G  E AF   M +E + IEP+ I +  LL AC   G V+ G    
Sbjct: 384 ---HYGCMVDMLGRAGQLEEAF---MFVESMKIEPNAIVWRTLLGACKIYGNVELGKYAN 437

Query: 473 ELMRRIHKLEPELQHYGCMVDILGRAGH---IEAARNLIED 510
           E +  + K   E   Y  + +I    G    ++  R + +D
Sbjct: 438 EKLLSMRK--DESGDYVLLSNIYASTGQWDGVQKVRKMFDD 476


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  303 bits (777), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 196/621 (31%), Positives = 320/621 (51%), Gaps = 51/621 (8%)

Query: 21  LRKCKT---LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
            R C     LN   Q+HA  I   F  +  + T +V  ++ +    LT+ AR  FF    
Sbjct: 257 FRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKA--NSLTD-ARRAFFGLPN 313

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
              +    +   +++    GL   EA+ +F  M+ + +  D  S S V  AC+      +
Sbjct: 314 HTVETSNAMMVGLVRA---GLG-IEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQ 369

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G Q+H L  K  F  D+ + N ++ LY +C  L  A  +F  M  +DSVS+N++I    +
Sbjct: 370 GQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQ 429

Query: 198 SGNIESARELFDSMPIR---ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN 254
           +G+ +     F+ M +R   + +  ++ SVL   A L+S L++   + +K+ +  L S  
Sbjct: 430 NGHYDDTILHFNEM-LRFGMKPDDFTYGSVLKACAALRS-LEYGLMVHDKVIKSGLGS-- 485

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
                                    D    + ++D Y K G +D A++L D +  + VV+
Sbjct: 486 -------------------------DAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVS 520

Query: 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
            NA++ G+  N  S +A + F  M  ++ L PD  +   VL   A L  I+ G  IH  +
Sbjct: 521 WNAILSGFSLNKESEEAQKFFSEM-LDMGLKPDHFTFATVLDTCANLATIELGKQIHGQI 579

Query: 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
            K +   +      L+DMY+KCG + +++ VFE++E      WNAMI G A+HGLG  A 
Sbjct: 580 IKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEAL 639

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
            +   M++ ++ P+  TF  +L AC+H GL  +G   F LM   +KLEP+L+H+ CMVDI
Sbjct: 640 RMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDI 699

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           LGR+   + A   I  MP + + VIW+TLLS C+  +++ + E  A +++ +D  +SS Y
Sbjct: 700 LGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVY 759

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           +LLSN++A  G W D  R R ++K+  LKK PGCSWIE++  +H F V DK+  +  ++Y
Sbjct: 760 ILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMHGFLVGDKAHPRSGELY 819

Query: 615 YMLDNM--------WTPDSVA 627
            ML+++        + PDS +
Sbjct: 820 EMLNDLIGEMKLSGYEPDSAS 840



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 145/557 (26%), Positives = 257/557 (46%), Gaps = 62/557 (11%)

Query: 115 VSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKV--AFGSDLFLQNCLISLYVRCGYLEF 172
           V+  + + S V ++C++ G            R V   F  + F+ NCL+ +Y RC     
Sbjct: 11  VAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPNAFVSNCLLQMYARCAGAAC 70

Query: 173 ARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK 232
           AR++FD M  RD+VS+N+M+  Y  +G+I +A  LFD MP  + +++SWN++++GY Q +
Sbjct: 71  ARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMP--DPDVVSWNALVSGYCQ-R 127

Query: 233 SGLQFAWQIFEKMPER----DLISWNSMLHGCVKCGKMD---DAQALFDKMP-KRDVVSW 284
              Q +  +F +M  R    D  ++  +L  C    ++       AL  K   + DV + 
Sbjct: 128 GMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTG 187

Query: 285 ANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYL 344
           + ++D Y K   +D A   F  MP+R+ V+  A + G V+N   ++ LE+F  MQ  L L
Sbjct: 188 SALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQ-RLGL 246

Query: 345 HPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIK 404
                S      + A +  ++ G  +H +  K++FS +   G A++D+Y+K  S+ +A +
Sbjct: 247 GVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARR 306

Query: 405 VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA---- 460
            F  + + +V+  NAM+ GL   GLG  A  L   M R SI  D ++ +G+ +ACA    
Sbjct: 307 AFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKG 366

Query: 461 -------HAGLVKEGL---------------LCFELMRRIHKLEPELQH----YGCMVDI 494
                  H   +K G                 C  LM      +   Q     +  ++  
Sbjct: 367 YFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAA 426

Query: 495 LGRAGHIEAARNLIEDM---PMEPNDVIWRTLLSACRNYENLNVG----EPVAKHLIGMD 547
           L + GH +       +M    M+P+D  + ++L AC    +L  G    + V K  +G D
Sbjct: 427 LEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSD 486

Query: 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
           +  +S+ V   +M+   G+ ++A+++          ++ G   +    ++  F +  +S 
Sbjct: 487 AFVASTVV---DMYCKCGIIDEAQKLHD--------RIGGQQVVSWNAILSGFSLNKESE 535

Query: 608 LQVRDIYYMLDNMWTPD 624
              +    MLD    PD
Sbjct: 536 EAQKFFSEMLDMGLKPD 552



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 162/662 (24%), Positives = 276/662 (41%), Gaps = 98/662 (14%)

Query: 36  RMITTGFIKNTHLTTKLV-------------ASFSSSPCTPLTEFARYIFFKYHA----- 77
           RM+ +GF+ N  ++  L+               F + P      +   +    HA     
Sbjct: 42  RMVVSGFVPNAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDIST 101

Query: 78  ----FREKKDPFL--WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
               F    DP +  WNA++  Y      +E++ +F  M   GVS D+ + +++LK+CS 
Sbjct: 102 AVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSA 161

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
           L  +  G+Q+H L  K     D+   + L+ +Y +C  L+ A   F  M  R+ VS+ + 
Sbjct: 162 LEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAA 221

Query: 192 IDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI 251
           I G V++       ELF          I    +  G +Q      F              
Sbjct: 222 IAGCVQNEQYVRGLELF----------IEMQRLGLGVSQPSYASAFR------------- 258

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           S  +M   C+  G+   A A+ +K     VV  A ++D YAK   +  ARR F  +P   
Sbjct: 259 SCAAM--SCLNTGRQLHAHAIKNKFSSDRVVGTA-IVDVYAKANSLTDARRAFFGLPNHT 315

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           V   NAMM G VR G  ++A+ +F  M     +  D  SL  V SA A+     +G  +H
Sbjct: 316 VETSNAMMVGLVRAGLGIEAMGLFQFM-IRSSIRFDVVSLSGVFSACAETKGYFQGQQVH 374

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
               K  F ++     A++D+Y KC ++  A  +F+ ++      WNA+I  L  +G  +
Sbjct: 375 CLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYD 434

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
                  EM R  ++PDD T+  +L ACA    ++ GL+  + + +   L  +      +
Sbjct: 435 DTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIK-SGLGSDAFVASTV 493

Query: 492 VDILGRAGHIEAARNLIE----------------------------------DMPMEPND 517
           VD+  + G I+ A+ L +                                  DM ++P+ 
Sbjct: 494 VDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDH 553

Query: 518 VIWRTLLSACRNYENLNVGEPVAKHLIG---MDSSNSSSYVLLSNMFAGLGMWNDARRVR 574
             + T+L  C N   + +G+ +   +I    +D    SS   L +M+A  G   D+  V 
Sbjct: 554 FTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISS--TLVDMYAKCGDMPDSLLVF 611

Query: 575 SMMKERNLKKLPG--CSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVATSCTH 632
             +++R+        C +  L G+  E  +R   R+Q  ++   + N  T  +V  +C+H
Sbjct: 612 EKVEKRDFVSWNAMICGY-ALHGLGVE-ALRMFERMQKENV---VPNHATFVAVLRACSH 666

Query: 633 YG 634
            G
Sbjct: 667 VG 668


>gi|414879049|tpg|DAA56180.1| TPA: hypothetical protein ZEAMMB73_301223 [Zea mays]
          Length = 534

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 178/554 (32%), Positives = 281/554 (50%), Gaps = 42/554 (7%)

Query: 43  IKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLD--- 99
           I+  H    + A  S  P  P  E   ++   + A      P L  +++      L    
Sbjct: 6   IRKPHFDRIVRALASDHPPPPRAELHAFLVRSHAA---ATAPALVRSLLNGAISRLSKRR 62

Query: 100 PKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFL-QN 158
           P+ AL +  +M    V  D F+    L A + L L+  G  +H +  ++A         N
Sbjct: 63  PRAALALLLIMPRLPVRPDHFTLPFALNAAASLRLLPLGASLHAVALRLALLPLRLPVAN 122

Query: 159 CLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNL 218
            L+ LY +C     A      +   D+VS+NS++  + ++ ++  A              
Sbjct: 123 ALVDLYAKCEEFPAAHAALADIPAPDAVSFNSLLCAHARNASVRPAE------------- 169

Query: 219 ISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK 278
                                 +F  MP R  +SWN+M+   V  G +  A  +FD+MP 
Sbjct: 170 ---------------------SLFAAMPTRTQVSWNAMVVLYVSAGDLAAACRVFDEMPT 208

Query: 279 RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM 338
           RD  S   +I GY K G V  AR LFD+MP +D+VA  AM+ GY + G    AL +F ++
Sbjct: 209 RDTASSMVLIVGYCKCGLVQNARELFDKMPTKDLVARTAMINGYAQTGRPKVALALFRDL 268

Query: 339 QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS 398
           +    + PD A++V V+SA++Q+G  +    +  Y+++ +   N K   AL+DM++KCG+
Sbjct: 269 EAA-GIEPDGATMVGVISAVSQIGSTELAGWVGAYVDRKKIERNEKVLTALVDMHAKCGN 327

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
           IE A+  F +I       + A+I+GLA HG   LA  +   M    I+P  ITF G+L A
Sbjct: 328 IEQALSAFREIPRPDAYPYTALISGLATHGHENLALSVFERMRAEDIKPHPITFVGVLTA 387

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
           C+HAG V++GL  +E M + + +E    HY C++D+LGRAG IE A  +++ MPM P+  
Sbjct: 388 CSHAGNVEKGLEYWEAMVQDYGIERHADHYACVIDMLGRAGRIEEAFEMVQTMPMGPHPG 447

Query: 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578
               LLSAC+ Y+N+ + E VA  L  ++  N+ +Y+LLSN++AG  +W +A RVRS+M+
Sbjct: 448 ALGALLSACKTYDNVEIAEVVANKLFELEPWNTGNYILLSNIYAGKELWEEAERVRSLMR 507

Query: 579 ERNLKKLPGCSWIE 592
            +   K PG +W E
Sbjct: 508 TKLPFKSPGSTWFE 521


>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
 gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
 gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
 gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
          Length = 534

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 167/479 (34%), Positives = 275/479 (57%), Gaps = 13/479 (2%)

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           I   + IHGL          F+   ++    +   +++A +LF+++   +   YNS+I  
Sbjct: 29  INASIIIHGL------SQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRA 82

Query: 195 YVKSGNIESARELFDSMPIRERNL---ISWNSVLNGYAQLKS---GLQFAWQIFEKMPER 248
           Y  +        ++  +  +   L    ++  +    A L S   G Q    + +  P  
Sbjct: 83  YTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRF 142

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
            +++ N+++   +K   + DA  +FD+M +RDV+SW +++ GYA+LG++  A+ LF  M 
Sbjct: 143 HVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLML 202

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            + +V+  AM+ GY   G  ++A++ F  MQ    + PD+ SL+ VL + AQLG ++ G 
Sbjct: 203 DKTIVSWTAMISGYTGIGCYVEAMDFFREMQLA-GIEPDEISLISVLPSCAQLGSLELGK 261

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            IH Y E+  F        ALI+MYSKCG I  AI++F Q+E   V  W+ MI+G A HG
Sbjct: 262 WIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHG 321

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
               A +   EM+R  ++P+ ITF GLL+AC+H G+ +EGL  F++MR+ +++EP+++HY
Sbjct: 322 NAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHY 381

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
           GC++D+L RAG +E A  + + MPM+P+  IW +LLS+CR   NL+V      HL+ ++ 
Sbjct: 382 GCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEP 441

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSR 607
            +  +YVLL+N++A LG W D  R+R M++  N+KK PG S IE+  +V EF   D S+
Sbjct: 442 EDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIVQEFVSGDNSK 500



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 118/461 (25%), Positives = 236/461 (51%), Gaps = 35/461 (7%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
            L++ K+ N+  +I+A +I  G  +++ + TK+V       C  + +      +    F 
Sbjct: 16  FLQRVKSRNEWKKINASIIIHGLSQSSFMVTKMV-----DFCDKIEDMD----YATRLFN 66

Query: 80  EKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV-DKFSASLVLKACSRLGLIE 136
           +  +P  FL+N+II+ Y+H     + + ++  +L     + D+F+   + K+C+ LG   
Sbjct: 67  QVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCY 126

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G Q+HG L K      +  +N LI +Y++   L  A ++FD+M  RD +S+NS++ GY 
Sbjct: 127 LGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYA 186

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLIS 252
           + G ++ A+ LF  M   ++ ++SW ++++GY  +   ++ A   F +M     E D IS
Sbjct: 187 RLGQMKKAKGLFHLM--LDKTIVSWTAMISGYTGIGCYVE-AMDFFREMQLAGIEPDEIS 243

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN----MIDGYAKLGRVDIARRLFDEMP 308
             S+L  C + G ++  + +     +R  +        +I+ Y+K G +  A +LF +M 
Sbjct: 244 LISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQME 303

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            +DV++ + M+ GY  +G +  A+E F+ MQ    + P+  + + +LSA + +G   +G+
Sbjct: 304 GKDVISWSTMISGYAYHGNAHGAIETFNEMQ-RAKVKPNGITFLGLLSACSHVGMWQEGL 362

Query: 369 AIHRYLEKD-QFSLNGKHGVALIDMYSKCGSIENAIKVFEQI---EDGSVDHWNAMINGL 424
                + +D Q     +H   LID+ ++ G +E A+++ + +    D  +  W ++++  
Sbjct: 363 RYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKI--WGSLLSSC 420

Query: 425 AIHGLGELAFDLLMEMERL-SIEPDDI-TFTGLLNACAHAG 463
              G  ++A   L+ M+ L  +EP+D+  +  L N  A  G
Sbjct: 421 RTPGNLDVA---LVAMDHLVELEPEDMGNYVLLANIYADLG 458


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 188/558 (33%), Positives = 294/558 (52%), Gaps = 54/558 (9%)

Query: 86  LWNAIIKTYSH--GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHG 143
           LW++++  +S    L+ + + + +  M  NGV   + +   +LKA  +L       Q H 
Sbjct: 69  LWDSLVGHFSGRVTLNRRLSFLSYRQMRRNGVVPSRHTFPPLLKAVFKL-RDANPFQFHA 127

Query: 144 LLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIES 203
            + K  F SDLF++N LIS                               GY   G  E 
Sbjct: 128 HILKFGFDSDLFVRNSLIS-------------------------------GYSNCGLFEF 156

Query: 204 ARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM-----LH 258
              +FD     +++++SW ++++G+ +  S L+ A   F +M +R  ++ N M     L 
Sbjct: 157 GSRVFDG--TEDKDVVSWTAMIDGFVRNDSSLE-AMTYFVEM-KRSGVAANEMTVVSVLK 212

Query: 259 GC-----VKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
                  V+ G+      L     + DV   ++++D Y K G  D A+++FDEMP R+VV
Sbjct: 213 ATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVV 272

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
              A++ GYV+     K + +F+ M  +  + P++ +L  VLSA A +G + +G  +H Y
Sbjct: 273 TWTALIAGYVQGRCFEKGMFVFEEM-LKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCY 331

Query: 374 LEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433
           + K+   +N   G  LID Y+KCG +E AI VFE++ + +V  W AMING A HG    A
Sbjct: 332 VIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGA 391

Query: 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493
            DL   M    + P+++TF  +L+ACAH GLV+EG   F  M+    LEP+  HY CMVD
Sbjct: 392 VDLFHTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVD 451

Query: 494 ILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS 553
           + GR G +E A+ LIE MPMEP + +W  L  +C  +++  +G+  A  +I +  S+S  
Sbjct: 452 LFGRKGLLEEAKALIERMPMEPTNAVWGALFGSCLIHKDYELGKYAASRVIKLQPSHSGR 511

Query: 554 YVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFV-RDKSRLQVRD 612
           Y LL+N+++    W+D  RVR  MK++ + K PGCSWIE++G +HEF    DK  L+  D
Sbjct: 512 YTLLANLYSESQNWDDVARVRKQMKDQQVVKSPGCSWIEVKGKLHEFIAFDDKKPLESDD 571

Query: 613 IYYMLDN----MWTPDSV 626
           +Y  LDN    M  PD +
Sbjct: 572 LYKTLDNVGVQMRLPDEL 589


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 168/462 (36%), Positives = 268/462 (58%), Gaps = 18/462 (3%)

Query: 172 FARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGY--- 228
           +   +F+++   +   YN++I GY+    ++ + E +  M  R+  ++  +         
Sbjct: 98  YPLSIFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLM--RKEGVVPVSFTFTALFKA 155

Query: 229 --AQLKSGL--QFAWQ-IFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS 283
             A++  GL  Q   Q I       DL   NSM+   +KCG ++  + +FD+MP RDV+S
Sbjct: 156 CGAKMDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVIS 215

Query: 284 WANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELY 343
           W  +I  Y K G ++ A  LFD +P +D+VA   M+ G+ +N    +A+  F+ MQ E  
Sbjct: 216 WTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQ-EFG 274

Query: 344 LHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH----GVALIDMYSKCGSI 399
           +  D+ +L+ V+SA AQLG       I    EK +F   GKH    G ALIDMYSKCGS+
Sbjct: 275 VETDEITLIGVISACAQLGAAKYADWIRDVAEKSEF--GGKHSVVVGSALIDMYSKCGSV 332

Query: 400 ENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
            +A +VF+ +++ +V  +++MI G A+HG    A  L  EM +  I+P+ +TF G+L AC
Sbjct: 333 GDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTAC 392

Query: 460 AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI 519
           +HAG+V++G   FELM + + ++P   HY CMVD+LGRAG ++ A  L++ MP+EP+  +
Sbjct: 393 SHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGV 452

Query: 520 WRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579
           W  LL ACR +++ ++    A HL  ++     +Y+LL+N++A  G WND   VR +M+ 
Sbjct: 453 WGALLGACRIHKSPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRT 512

Query: 580 RNLKKLPGCSWIELE-GVVHEFFVRDKSRLQVRDIYYMLDNM 620
           R L+K P  SWIE E G+VHEFF  D +  +  +I   L+++
Sbjct: 513 RGLRKNPAFSWIESEKGMVHEFFSGDMTHPRSGEIKQALEDL 554



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 133/443 (30%), Positives = 230/443 (51%), Gaps = 29/443 (6%)

Query: 21  LRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           L  CK L  + Q+HAR++  G  ++ ++  KL+ + +     P+  +   IF + +    
Sbjct: 53  LDGCKNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLN-IPVDPYPLSIFNQVNY--- 108

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
             +PFL+NA+I+ Y      KE+   + LM   GV    F+ + + KAC     +  G Q
Sbjct: 109 -PNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQ 167

Query: 141 IHGLLRKVA-FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           IHG    V  FG DL + N +I +Y++CG+LE  R++FD+M  RD +S+  +I  YVKSG
Sbjct: 168 IHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSG 227

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLISWNS 255
           N+ESA ELFD +P+  +++++W  +++G+AQ  +  + A   FEKM     E D I+   
Sbjct: 228 NMESAGELFDGLPV--KDMVAWTVMVSGFAQ-NAKPREAIMFFEKMQEFGVETDEITLIG 284

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRD------VVSWANMIDGYAKLGRVDIARRLFDEMPK 309
           ++  C + G    A  + D   K +      VV  + +ID Y+K G V  A R+F  M +
Sbjct: 285 VISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKE 344

Query: 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369
           R+V + ++M+ G+  +G    A+++FD M  +  + P+  + + VL+A +  G +++G  
Sbjct: 345 RNVYSYSSMILGFAMHGRVHDAMKLFDEM-VKTEIKPNRVTFIGVLTACSHAGMVEQGWQ 403

Query: 370 IHRYLEK-DQFSLNGKHGVALIDMYSKCGSIENA---IKVFEQIEDGSVDHWNAMINGLA 425
           I   +EK      +  H   ++D+  + G ++ A   +K       G V  W A++    
Sbjct: 404 IFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGV--WGALLGACR 461

Query: 426 IHG---LGELAFDLLMEMERLSI 445
           IH    +  +A + L E+E   I
Sbjct: 462 IHKSPDIAAIAANHLFELEPYCI 484


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 188/598 (31%), Positives = 315/598 (52%), Gaps = 53/598 (8%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           L+R   +     Q+HA  +  G ++ +  T       S S       F R I   Y  F 
Sbjct: 76  LIRAAPSNASAAQLHACALRLGLVRPSVFT-------SGSLVHAYLRFGR-ISEAYKVFD 127

Query: 80  E--KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
           E  ++D   WNA++          EA+ +F  M+  GV+ D  + S VL  C  LG    
Sbjct: 128 EMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVL 187

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
            L +H    K     +LF+          C                     N++ID Y K
Sbjct: 188 ALVMHVYAVKHGLDKELFV----------C---------------------NALIDVYGK 216

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLISW 253
            G +E A+ +F  M  R+  L++WNS+++G  Q +     A ++F+ M       D+++ 
Sbjct: 217 LGMLEEAQCVFHGMECRD--LVTWNSIISGCEQ-RGQTAAALKMFQGMRGSGVSPDVLTL 273

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKR-----DVVSWANMIDGYAKLGRVDIARRLFDEMP 308
            S+     + G    A++L   + +R     D+++   ++D YAKL  ++ A+R+FD MP
Sbjct: 274 VSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMP 333

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            +D V+ N ++ GY++NG + +A+E + +MQ    L     + V VL A + LG + +G+
Sbjct: 334 VQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGM 393

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
            +H    K   +++   G  LID+Y+KCG +  A+ +FE++   S   WNA+I+GL +HG
Sbjct: 394 RMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHG 453

Query: 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488
            G  A  L   M++  I+PD +TF  LL AC+HAGLV +G   F++M+  + + P  +HY
Sbjct: 454 HGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHY 513

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548
            CM D+LGRAG ++ A N I++MP++P+  +W  LL ACR + N+ +G+  +++L  +D 
Sbjct: 514 ACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDP 573

Query: 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKS 606
            N   YVL+SNM+A +G W+    VRS+++ +NL+K PG S IE++  V+ F+  +++
Sbjct: 574 ENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQT 631


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 176/556 (31%), Positives = 293/556 (52%), Gaps = 39/556 (7%)

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL 132
           FK      +++   W  +I          EA+ +F  M+ +G   D+F+ S V+ AC+ +
Sbjct: 225 FKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANM 284

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
            L+  G Q+H    +     D  +  CLI++Y +C                         
Sbjct: 285 ELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSV----------------------- 321

Query: 193 DGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI- 251
                 G++ +AR++FD   I + N+ SW +++ GY Q     + A  +F  M    +I 
Sbjct: 322 -----DGSMCAARKIFDQ--ILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIP 374

Query: 252 ---SWNSMLHGCVKCGKMDDAQALFD---KMPKRDVVSWAN-MIDGYAKLGRVDIARRLF 304
              +++S L  C     +   + +F    K+    V   AN +I  YA+ GR+D AR+ F
Sbjct: 375 NHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAF 434

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
           D + ++++++ N ++  Y +N  S +ALE+F+ ++ +  +     +   +LS  A +G I
Sbjct: 435 DILFEKNLISYNTVIDAYAKNLNSEEALELFNEIE-DQGMGASAFTFASLLSGAASIGTI 493

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
            KG  IH  + K    LN     ALI MYS+CG+IE+A +VFE +ED +V  W ++I G 
Sbjct: 494 GKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGF 553

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
           A HG    A +L  +M    + P+++T+  +L+AC+H GLV EG   F+ M   H + P 
Sbjct: 554 AKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPR 613

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
           ++HY C+VDILGR+G +  A   I  MP + + ++WRT L ACR + NL +G+  AK +I
Sbjct: 614 MEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMII 673

Query: 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
             +  + ++Y+LLSN++A +  W++   +R  MKE+ L K  GCSW+E+E  VH+F+V D
Sbjct: 674 EQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGD 733

Query: 605 KSRLQVRDIYYMLDNM 620
            S  +  +IY  L N+
Sbjct: 734 TSHPKAAEIYDELQNL 749



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 140/542 (25%), Positives = 237/542 (43%), Gaps = 81/542 (14%)

Query: 154 LFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPI 213
           LFL+ C+ +     G L   +     + + DSV+ NS+I  Y K G  E A  +F  M  
Sbjct: 71  LFLKKCIRTRSFDIGTLVHEKLTQSDLQL-DSVTLNSLISLYSKCGQWEKATSIFRLMG- 128

Query: 214 RERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER----DLISWNSMLHGCVKCGKMDDA 269
             R+LISW+++++ +A    G + A   F  M E     +   + +    C     +   
Sbjct: 129 SSRDLISWSAMVSCFANNNMGFR-ALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVG 187

Query: 270 QALFDKMPK-----RDVVSWANMIDGYAKLGRVDI--ARRLFDEMPKRDVVACNAMMGGY 322
            ++F  + K      DV     +ID + K GR D+  A ++F++MP+R+ V    M+   
Sbjct: 188 DSIFGFVIKTGYLQSDVCVGCGLIDMFVK-GRGDLVSAFKVFEKMPERNAVTWTLMITRL 246

Query: 323 VRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN 382
           ++ GY+ +A+++F +M    Y  PD  +L  V+SA A +  +  G  +H    +   +L+
Sbjct: 247 MQFGYAGEAIDLFLDMIFSGY-EPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLD 305

Query: 383 GKHGVALIDMYSKC---GSIENAIKVFEQIEDGSVDHWNAMING-LAIHGLGELAFDLLM 438
              G  LI+MY+KC   GS+  A K+F+QI D +V  W AMI G +   G  E A DL  
Sbjct: 306 RCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFR 365

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC----MVDI 494
            M    + P+  TF+  L ACA+   ++ G   F      H ++       C    ++ +
Sbjct: 366 GMILTHVIPNHFTFSSTLKACANLAALRIGEQVF-----THAVKLGFSSVNCVANSLISM 420

Query: 495 LGRAGHIEAAR----------------------------------NLIEDMPMEPNDVIW 520
             R+G I+ AR                                  N IED  M  +   +
Sbjct: 421 YARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTF 480

Query: 521 RTLLSACRNYENLNVGEPVAKHLI--GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578
            +LLS   +   +  GE +   +I  G+  + S    L+S M++  G    A +V   M+
Sbjct: 481 ASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALIS-MYSRCGNIESAFQVFEDME 539

Query: 579 ERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYY-MLDNMWTPDSVA-----TSCTH 632
           +RN+      SW      +   F +     Q  ++++ ML+    P+ V      ++C+H
Sbjct: 540 DRNV-----ISWTS----IITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSH 590

Query: 633 YG 634
            G
Sbjct: 591 VG 592



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 128/501 (25%), Positives = 213/501 (42%), Gaps = 89/501 (17%)

Query: 110 MLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY 169
           M+  G   D  + SL LK C R    + G  +H  L +     D    N LISLY +CG 
Sbjct: 57  MVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQ 116

Query: 170 LEFARQLFDKMG-IRDSVSYNSMIDGYVKSG--------------NIESARELFDSMPIR 214
            E A  +F  MG  RD +S+++M+  +  +               N     E   +   R
Sbjct: 117 WEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATR 176

Query: 215 ERNLISWNSV---------LNGYAQL---------------KSGLQFAWQIFEKMPERDL 250
             +   + SV           GY Q                +  L  A+++FEKMPER+ 
Sbjct: 177 ACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNA 236

Query: 251 ISWNSMLHGCVKCGKMDDAQALFDKM------PKRDVVS-----WANM------------ 287
           ++W  M+   ++ G   +A  LF  M      P R  +S      ANM            
Sbjct: 237 VTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQ 296

Query: 288 ----------------IDGYAKL---GRVDIARRLFDEMPKRDVVACNAMMGGYV-RNGY 327
                           I+ YAK    G +  AR++FD++   +V +  AM+ GYV + GY
Sbjct: 297 AIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGY 356

Query: 328 SMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV 387
             +AL++F  M    ++ P+  +    L A A L  +  G  +  +  K  FS       
Sbjct: 357 DEEALDLFRGMILT-HVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVAN 415

Query: 388 ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP 447
           +LI MY++ G I++A K F+ + + ++  +N +I+  A +   E A +L  E+E   +  
Sbjct: 416 SLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGA 475

Query: 448 DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC--MVDILGRAGHIEAAR 505
              TF  LL+  A  G + +G    ++  R+ K   +L    C  ++ +  R G+IE+A 
Sbjct: 476 SAFTFASLLSGAASIGTIGKGE---QIHARVIKSGLKLNQSVCNALISMYSRCGNIESAF 532

Query: 506 NLIEDMPMEPNDVIWRTLLSA 526
            + EDM  + N + W ++++ 
Sbjct: 533 QVFEDME-DRNVISWTSIITG 552



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 171/380 (45%), Gaps = 48/380 (12%)

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV----VSWANMIDGYAKLGRVDIARRLF 304
           DL +++  L  C++    D    + +K+ + D+    V+  ++I  Y+K G+ + A  +F
Sbjct: 65  DLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIF 124

Query: 305 DEM-PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
             M   RD+++ +AM+  +  N    +AL  F +M    Y +P++        A +    
Sbjct: 125 RLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGY-YPNEYCFAAATRACSTAEF 183

Query: 364 IDKGVAIHRYLEKDQF-SLNGKHGVALIDMYSKC-GSIENAIKVFEQIEDGSVDHWNAMI 421
           +  G +I  ++ K  +   +   G  LIDM+ K  G + +A KVFE++ + +   W  MI
Sbjct: 184 VSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMI 243

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA-----------HAGLVKEGLL 470
             L   G    A DL ++M     EPD  T +G+++ACA           H+  ++ GL 
Sbjct: 244 TRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLT 303

Query: 471 -------CFELM-------------RRI--HKLEPELQHYGCMVD-ILGRAGHIEAARNL 507
                  C   M             R+I    L+  +  +  M+   + + G+ E A +L
Sbjct: 304 LDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDL 363

Query: 508 IEDMPME---PNDVIWRTLLSACRNYENLNVGEPVAKHLI--GMDSSNSSSYVLLSNMFA 562
              M +    PN   + + L AC N   L +GE V  H +  G  S N  +  L+S M+A
Sbjct: 364 FRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLIS-MYA 422

Query: 563 GLGMWNDARRVRSMMKERNL 582
             G  +DAR+   ++ E+NL
Sbjct: 423 RSGRIDDARKAFDILFEKNL 442



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 141/306 (46%), Gaps = 29/306 (9%)

Query: 21  LRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77
           L+ C  L  +    Q+    +  GF     +   L++ ++ S        A  I F+   
Sbjct: 383 LKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFE--- 439

Query: 78  FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137
               K+   +N +I  Y+  L+ +EAL +F  + D G+    F+ + +L   + +G I +
Sbjct: 440 ----KNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGK 495

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G QIH  + K     +  + N LIS+Y RCG +E A Q+F+ M  R+ +S+ S+I G+ K
Sbjct: 496 GEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAK 555

Query: 198 SGNIESARELFDSM---PIRERNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERDLISW 253
            G    A ELF  M    +R  N +++ +VL+  + +  GL    W+ F+ M     +  
Sbjct: 556 HGFATQALELFHKMLEEGVRP-NEVTYIAVLSACSHV--GLVNEGWKHFKSMYTEHGVIP 612

Query: 254 NSMLHGCV-----KCGKMDDAQALFDKMP-KRDVVSW-----ANMIDGYAKLGRVDIARR 302
               + C+     + G + +A    + MP K D + W     A  + G  +LG+   A+ 
Sbjct: 613 RMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGK-HAAKM 671

Query: 303 LFDEMP 308
           + ++ P
Sbjct: 672 IIEQEP 677



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 8/207 (3%)

Query: 323 VRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN 382
           + NG   KA+   ++M      HPD  +  + L    +    D G  +H  L +    L+
Sbjct: 42  INNGRLHKAISTLEHM-VHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLD 100

Query: 383 GKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD--HWNAMINGLAIHGLGELAFDLLMEM 440
                +LI +YSKCG  E A  +F ++   S D   W+AM++  A + +G  A    ++M
Sbjct: 101 SVTLNSLISLYSKCGQWEKATSIF-RLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDM 159

Query: 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC-MVDILGRA- 498
                 P++  F     AC+ A  V  G   F  + +   L+ ++   GC ++D+  +  
Sbjct: 160 IENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVC-VGCGLIDMFVKGR 218

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLS 525
           G + +A  + E MP E N V W  +++
Sbjct: 219 GDLVSAFKVFEKMP-ERNAVTWTLMIT 244


>gi|326507410|dbj|BAK03098.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 698

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 206/674 (30%), Positives = 326/674 (48%), Gaps = 92/674 (13%)

Query: 26  TLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPF 85
           T+  V + HA ++ +G    T     L A   SSP       AR +F +      + D  
Sbjct: 15  TIAAVAKSHATLLKSGVTSPTPWNQLLTAYSVSSPGLAA---ARRLFDEI----PRLDAA 67

Query: 86  LWNAIIKTY-SHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGL 144
            WN+++  + S G  P  A  +   M + G++ + F+    L++ + +G    G Q+H L
Sbjct: 68  SWNSLLAAHVSIGAHPA-ACRLLRAMHERGLAANTFALGSALRSAAAMGCSALGTQLHSL 126

Query: 145 LRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESA 204
             K     ++F    L+ +Y +CG    A +LFD M  R++VS+N+++ GYV+SG +  A
Sbjct: 127 AVKAGLADNVFSATALLHMYAKCGRTRDACRLFDGMPERNTVSWNALVAGYVESGKVAPA 186

Query: 205 RELFDSMPIRER-------------------------------------NLISWNSVLNG 227
            +LF  M  RE                                       LI  N+ +  
Sbjct: 187 VQLFVEME-REGFLPDEATFAALLTVVNDSTCFLMHQLHGKIVKYGSALGLIVLNAAITA 245

Query: 228 YAQLKSGLQFAWQIFEKMPER-DLISWNSMLHGCVKCGKMDDAQALFDKMPKR-----DV 281
           Y+Q  + L  + +IF+++ +R DLISWN+ML      G   +A   F  M +      D+
Sbjct: 246 YSQCGA-LANSRRIFDEIGDRSDLISWNAMLGAYATHGMEHEAMRFFASMMRASGVQPDM 304

Query: 282 VSWANMI--------------------DGYAKLGRV-----------------DIARRLF 304
            S+ ++I                    +G+  +  V                 + A + F
Sbjct: 305 YSFTSIISACAEHRDHGGTVIHGLVSKNGFEGVTHVCNALIAMYTRFSENCMMEDAYKCF 364

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
           D +  +D V+ N+M+ GY ++G S  AL  F  MQ E  +  D+ +    L + + L  +
Sbjct: 365 DSLLLKDTVSWNSMLTGYSQHGLSADALRFFRCMQSE-NITTDEYAFSAALRSCSDLALL 423

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
             G  IH  + +  F+ N     +LI MYSK G +++A+K FE+ +  S   WN+M+ G 
Sbjct: 424 RLGRQIHGLVIRSGFASNNFVSSSLIFMYSKSGILDDAMKSFEEADKSSSVPWNSMMFGY 483

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
           A HG  +    L  +M  L +  D ITF GL+ AC+HAGLV EG      M   + +   
Sbjct: 484 AQHGKAQAVRSLFNQMLELKVPLDHITFVGLITACSHAGLVDEGSEILNTMESRYGIPLR 543

Query: 485 LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
           ++HY C +D+ GRAG ++ A+ LI+ MP EP+ ++W TLL ACR + N+ +   VA HL+
Sbjct: 544 MEHYACGIDLYGRAGQLDKAKELIDSMPFEPDAMVWMTLLGACRVHGNMELASDVASHLL 603

Query: 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRD 604
             +    S+YVLLSNM++GLGMW+D   V+  MK + L K+PG SWIE++  VH F   D
Sbjct: 604 EAEPRQHSTYVLLSNMYSGLGMWSDRAIVQKEMKNKGLSKVPGWSWIEVKNEVHSFNAED 663

Query: 605 KSRLQVRDIYYMLD 618
            S  ++ +IY ML 
Sbjct: 664 GSHPRMDEIYEMLS 677



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 110/453 (24%), Positives = 198/453 (43%), Gaps = 60/453 (13%)

Query: 10  PCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFAR 69
           P  +T + LL +    T   ++Q+H +++  G      +    + ++S   C  L   +R
Sbjct: 200 PDEATFAALLTVVNDSTCFLMHQLHGKIVKYGSALGLIVLNAAITAYSQ--CGALAN-SR 256

Query: 70  YIFFKYHAFREKKDPFLWNAIIKTY-SHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA 128
            IF +     ++ D   WNA++  Y +HG++ +       +M  +GV  D +S + ++ A
Sbjct: 257 RIFDE---IGDRSDLISWNAMLGAYATHGMEHEAMRFFASMMRASGVQPDMYSFTSIISA 313

Query: 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCG---YLEFARQLFDKMGIRDS 185
           C+       G  IHGL+ K  F     + N LI++Y R      +E A + FD + ++D+
Sbjct: 314 CAE-HRDHGGTVIHGLVSKNGFEGVTHVCNALIAMYTRFSENCMMEDAYKCFDSLLLKDT 372

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNLIS----WNSVLNG---YAQLKSGLQFA 238
           VS+NSM+ GY + G    A   F  M  +  N+ +    +++ L      A L+ G Q  
Sbjct: 373 VSWNSMLTGYSQHGLSADALRFFRCM--QSENITTDEYAFSAALRSCSDLALLRLGRQIH 430

Query: 239 WQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVD 298
             +       +    +S++    K G +DDA   F++  K   V W +M+ GYA+ G+  
Sbjct: 431 GLVIRSGFASNNFVSSSLIFMYSKSGILDDAMKSFEEADKSSSVPWNSMMFGYAQHGKAQ 490

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
             R LF++M                                 EL +  D  + V +++A 
Sbjct: 491 AVRSLFNQM--------------------------------LELKVPLDHITFVGLITAC 518

Query: 359 AQLGHIDKGVAIHRYLE-KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI---EDGSV 414
           +  G +D+G  I   +E +    L  +H    ID+Y + G ++ A ++ + +    D  V
Sbjct: 519 SHAGLVDEGSEILNTMESRYGIPLRMEHYACGIDLYGRAGQLDKAKELIDSMPFEPDAMV 578

Query: 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEP 447
             W  ++    +HG  ELA D+   +  L  EP
Sbjct: 579 --WMTLLGACRVHGNMELASDVASHL--LEAEP 607


>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g50270-like [Glycine max]
          Length = 560

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 190/589 (32%), Positives = 309/589 (52%), Gaps = 58/589 (9%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIK----NTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           L +K +TL    QI + ++T+G       NT   TKL+       C P ++         
Sbjct: 14  LFKKHQTLEQCKQIQSIIVTSGLYSTQDNNTLFLTKLLQ------CVPFSQNQNTCLLLL 67

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
                  +  L N +I   SH   P  +L+ +  +   GV  DK +  L+LK  S+  + 
Sbjct: 68  FDTINTPNTRLLNKMIAACSH---PHISLLCYAKLRQKGVQPDKHTFPLLLKTFSK-SIA 123

Query: 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
           +    I+  + K+ F  DLF+ N LI                                 +
Sbjct: 124 QNPFMIYAQIFKLGFDLDLFIGNALIP-------------------------------AF 152

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERD----LI 251
             SG +ESAR++FD  P ++   ++W +++NGY +     + A + F KM  RD     +
Sbjct: 153 ANSGFVESARQVFDESPFQDT--VAWTALINGYVKNDCPGE-ALKCFVKMRLRDRSVDAV 209

Query: 252 SWNSMLHGCVKCGKMDDAQAL--FDKMPKR---DVVSWANMIDGYAKLGRVDIARRLFDE 306
           +  S+L      G  D  + +  F     R   D   ++ ++D Y K G  + A ++F+E
Sbjct: 210 TVASILRAAALVGDADFGRWVHGFYVEAGRVQLDGYVFSALMDMYFKCGHCEDACKVFNE 269

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           +P RDVV    ++ GYV++     AL  F +M  +  + P+D +L  VLSA AQ+G +D+
Sbjct: 270 LPHRDVVCWTVLVAGYVQSNKFQDALRAFWDMLSD-NVAPNDFTLSSVLSACAQMGALDQ 328

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G  +H+Y+E ++ ++N   G AL+DMY+KCGSI+ A++VFE +   +V  W  +INGLA+
Sbjct: 329 GRLVHQYIECNKINMNVTLGTALVDMYAKCGSIDEALRVFENMPVKNVYTWTVIINGLAV 388

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           HG    A ++   M +  I+P+++TF G+L AC+H G V+EG   FELM+  + L+PE+ 
Sbjct: 389 HGDALGALNIFCCMLKSGIQPNEVTFVGVLAACSHGGFVEEGKRLFELMKHAYHLKPEMD 448

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HYGCMVD+LGRAG++E A+ +I++MPM+P+  +   L  AC  ++   +GE +   L+  
Sbjct: 449 HYGCMVDMLGRAGYLEDAKQIIDNMPMKPSPGVLGALFGACLVHKAFEMGEHIGNLLVNQ 508

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG 595
             ++S SY LL+N++     W  A +VR +MK   + K PG S IE++G
Sbjct: 509 QPNHSGSYALLANLYKMCQNWEAAAQVRKLMKGLRVVKAPGYSRIEVDG 557


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 209/683 (30%), Positives = 332/683 (48%), Gaps = 84/683 (12%)

Query: 15  QSTLLLLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
           ++ + LLR C   +  ++ +++H+ +  T       L   L++ F       L E A Y+
Sbjct: 95  ETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRF--GDLVE-AWYV 151

Query: 72  FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
           F K      ++D F WN ++  Y+      EAL ++  ML  G+  D ++   VL+ C  
Sbjct: 152 FGKM----AERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGG 207

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
           L  +  G ++H  + +  F SD+ + N LI++YV+CG +  AR +FD+M  RD +S+N+M
Sbjct: 208 LPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAM 267

Query: 192 IDGYVKSGNIESARELFDSMP--IRERNLISWNSVLNGYAQL---KSGLQFAWQIFEKMP 246
           I GY ++        LF  M     + +L++  SV++    L   + G +    + +   
Sbjct: 268 ISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGF 327

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
             ++   NS++      G  D+A+ +F KM  +D+VSW  MI GY K G  + A   +  
Sbjct: 328 VAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTI 387

Query: 307 MPKRDVV-----------AC----------------------------NAMMGGYVRNGY 327
           M    VV           AC                            N+++  Y +   
Sbjct: 388 MEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRC 447

Query: 328 SMKALEIFDNM-----------------------------QCELYLHPDDASLVIVLSAI 358
             KALE+F  +                             Q  L L P+  +LV VLSA 
Sbjct: 448 IDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLSAC 507

Query: 359 AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWN 418
           A++G +  G  IH +  +     +G    AL+DMY +CG +E A   F   E   V  WN
Sbjct: 508 ARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCEK-DVASWN 566

Query: 419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRI 478
            ++ G A  G G LA +L  +M    + PD+ITFT LL AC+ +G+V +GL  FE M   
Sbjct: 567 ILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHK 626

Query: 479 HKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEP 538
             + P L+HY  +VD+LGRAG +E A   I+ MP++P+  IW  LL+ACR Y+N+ +GE 
Sbjct: 627 FHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGEL 686

Query: 539 VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVH 598
            A+H+  MD+ +   Y+LL N++A  G W++  RVR +M+E  L   PGCSW+E+ G VH
Sbjct: 687 AAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVH 746

Query: 599 EFFVRDKSRLQVRDIYYMLDNMW 621
            F   D    Q+++I  +L+  +
Sbjct: 747 AFLTGDDFHPQIKEINAVLEGFY 769



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 124/442 (28%), Positives = 205/442 (46%), Gaps = 42/442 (9%)

Query: 99  DPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQN 158
           D ++AL+    M +  VSV++ +   +L+ C       EG ++H  + K      + L N
Sbjct: 74  DLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGN 133

Query: 159 CLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM---PIRE 215
            L+S++VR G L  A  +F KM  RD  S+N ++ GY K+G  + A  L+  M    IR 
Sbjct: 134 ALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRP 193

Query: 216 RNLISWNSVL---NGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
            ++ ++  VL    G   L  G +    +     E D+   N+++   VKCG +  A+ +
Sbjct: 194 -DVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLV 252

Query: 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
           FD+MP+RD +SW                               NAM+ GY  N   ++ L
Sbjct: 253 FDRMPRRDRISW-------------------------------NAMISGYFENDVCLEGL 281

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDM 392
            +F  M+ E ++ PD  ++  V+SA   LG    G  +H Y+ K  F        +LI M
Sbjct: 282 RLFFMMR-EFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQM 340

Query: 393 YSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITF 452
           +S  G  + A  VF ++E   +  W AMI+G   +GL E A +    ME   + PD+IT 
Sbjct: 341 HSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITI 400

Query: 453 TGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP 512
             +L+ACA  GL+ +G++  E   R   L   +     ++D+  +   I+ A  +   +P
Sbjct: 401 ASVLSACAGLGLLDKGIMLHEFADRT-GLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP 459

Query: 513 MEPNDVIWRTLLSACR-NYENL 533
              N + W +++   R NY + 
Sbjct: 460 -NKNVISWTSIILGLRLNYRSF 480


>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Glycine max]
          Length = 563

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 186/584 (31%), Positives = 312/584 (53%), Gaps = 31/584 (5%)

Query: 15  QSTLL-LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFF 73
           Q+T+L LL KCK++ ++ ++H  ++TT  IK+    +KL+     S      EF   I +
Sbjct: 4   QNTILSLLAKCKSMRELKKLHGLIVTTPTIKSIIPLSKLIDFCVDS------EFGD-INY 56

Query: 74  KYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
                R+  +P  ++WN++I+ + +  +P+ +++++  M++NG S D F+   VLKAC  
Sbjct: 57  ADLVLRQIHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKACCV 116

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
           +   + G  IH  + K  F +D +    L+ +YV C  ++   ++FD +   + V++  +
Sbjct: 117 IADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCL 176

Query: 192 IDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI 251
           I GYVK+     A ++F+ M         WN   N    + + +  A         RD I
Sbjct: 177 IAGYVKNNQPYEALKVFEDMS-------HWNVEPNEITMVNALIACA-------HSRD-I 221

Query: 252 SWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
                +H  ++    D     F      +++    +++ YAK GR+ IAR LF++MP+R+
Sbjct: 222 DTGRWVHQRIRKAGYDP----FMSTSNSNIILATAILEMYAKCGRLKIARDLFNKMPQRN 277

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           +V+ N+M+  Y +     +AL++F +M     ++PD A+ + VLS  A    +  G  +H
Sbjct: 278 IVSWNSMINAYNQYERHQEALDLFFDMWTS-GVYPDKATFLSVLSVCAHQCALALGQTVH 336

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
            YL K   + +     AL+DMY+K G + NA K+F  ++   V  W +MINGLA+HG G 
Sbjct: 337 AYLLKTGIATDISLATALLDMYAKTGELGNAQKIFSSLQKKDVVMWTSMINGLAMHGHGN 396

Query: 432 LAFDLLMEM-ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490
            A  +   M E  S+ PD IT+ G+L AC+H GLV+E    F LM  ++ + P  +HYGC
Sbjct: 397 EALSMFQTMQEDSSLVPDHITYIGVLFACSHVGLVEEAKKHFRLMTEMYGMVPGREHYGC 456

Query: 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550
           MVD+L RAGH   A  L+E M ++PN  IW  LL+ C+ +EN+ V   V   L  ++   
Sbjct: 457 MVDLLSRAGHFREAERLMETMTVQPNIAIWGALLNGCQIHENVCVANQVKVRLKELEPCQ 516

Query: 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
           S  ++LLSN++A  G W +    R +MK + + K  G S +E++
Sbjct: 517 SGVHILLSNIYAKAGRWEEVNVTRKVMKHKRITKTIGHSSVEMK 560


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 196/608 (32%), Positives = 321/608 (52%), Gaps = 45/608 (7%)

Query: 20  LLRKCKT---LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           + R C     L+   Q+HA  I   F  +  + T +V  ++ +    L + AR  FF   
Sbjct: 243 VFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKAD--SLVD-ARRAFFSLP 299

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
               +    +   +++T   GL   EAL +F  M  +G+  D  S S V  AC+ +    
Sbjct: 300 NHTVQACNAMMVGLVRT---GLGA-EALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYL 355

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           +GLQ+H L  K  F  D+ ++N ++ LY +C  L  A  +F +M  RDSVS+N++I    
Sbjct: 356 QGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALE 415

Query: 197 KSGNIESARELFDSMPIR---ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISW 253
           ++   E      + M +R   E +  ++ SVL   A L+S                 + +
Sbjct: 416 QNECYEDTIAYLNEM-LRYGMEPDDFTYGSVLKACAGLQS-----------------LEY 457

Query: 254 NSMLHG-CVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV 312
            S++HG  +K G   DA            VS + ++D Y K G +  A++L D +  +++
Sbjct: 458 GSVVHGKAIKSGLGLDA-----------FVS-STVVDMYCKCGMITEAQKLHDRIGGQEL 505

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           V+ N+++ G+  N  S +A + F  M  ++ + PD  +   VL   A L  I+ G  IH 
Sbjct: 506 VSWNSIISGFSLNKQSEEAQKFFSEM-LDIGVKPDHFTYATVLDTCANLATIELGKQIHG 564

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
            + K +   +      L+DMY+KCG++ +++ +FE+ +      WNAMI G A+HG G  
Sbjct: 565 QIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSWNAMICGYALHGQGFE 624

Query: 433 AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV 492
           A ++   M++ ++ P+  TF  +L AC+H GL+ +G   F LM   +KLEP+L+H+ CMV
Sbjct: 625 ALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTSRYKLEPQLEHFACMV 684

Query: 493 DILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552
           DILGR+   + A   I  MP+E + VIW+TLLS C+  +++ V E  A +++ +D  +SS
Sbjct: 685 DILGRSKGPQEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASNVLRLDPDDSS 744

Query: 553 SYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRD 612
            Y+LLSN++A  G W D  R R +M++  LKK PGCSWIE++  +H F   DK   + R+
Sbjct: 745 VYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQSEMHGFLAGDKVHPRSRE 804

Query: 613 IYYMLDNM 620
           +Y ML+N+
Sbjct: 805 VYEMLNNL 812



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 137/537 (25%), Positives = 245/537 (45%), Gaps = 64/537 (11%)

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           +  G   H  +    F    F+ NCL+ +Y RCG    AR +FD M  RD+VS+N+M+  
Sbjct: 20  LATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTMLTA 79

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN 254
           Y  +G+  +A  LF +MP  + +++SWN++L+GY Q +   + +  +  +M  R +    
Sbjct: 80  YAHAGDTGAAASLFGAMP--DPDVVSWNALLSGYCQ-RGMFRDSVGLSVEMARRGVAPDR 136

Query: 255 SMLHGCVK-CGKMDD--------AQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFD 305
           + L   +K CG ++D        A A+   + + DV + + ++D Y K   ++ A R F 
Sbjct: 137 TTLAVLLKACGGLEDLALGVQIHAVAVKTGL-EMDVRAGSALVDMYGKCRSLEDALRFFH 195

Query: 306 EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365
            M +R+ V+  A + G V+N    + LE+F  MQ  L L     +   V  + A +  + 
Sbjct: 196 GMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQ-RLGLGVSQPAYASVFRSCAAITCLS 254

Query: 366 KGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
               +H +  K++FS +   G A++D+Y+K  S+ +A + F  + + +V   NAM+ GL 
Sbjct: 255 TARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLV 314

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL 485
             GLG  A  L   M R  I  D ++ +G+ +ACA      +GL    L  +    + ++
Sbjct: 315 RTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIK-SGFDVDV 373

Query: 486 QHYGCMVDILGRAGHIEAARNLIEDMP--------------------------------- 512
                ++D+ G+   +  A  + ++M                                  
Sbjct: 374 CVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRY 433

Query: 513 -MEPNDVIWRTLLSACRNYENLNVGEPV----AKHLIGMDSSNSSSYVLLSNMFAGLGMW 567
            MEP+D  + ++L AC   ++L  G  V     K  +G+D+  SS+ V   +M+   GM 
Sbjct: 434 GMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVV---DMYCKCGMI 490

Query: 568 NDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPD 624
            +A+++   +  + L      SW     ++  F +  +S    +    MLD    PD
Sbjct: 491 TEAQKLHDRIGGQEL-----VSW---NSIISGFSLNKQSEEAQKFFSEMLDIGVKPD 539



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 163/625 (26%), Positives = 254/625 (40%), Gaps = 110/625 (17%)

Query: 34  HARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKT 93
           HARM+ +GF+  T ++  L+  ++   C      AR +F         +D   WN ++  
Sbjct: 27  HARMLVSGFMPTTFVSNCLLQMYAR--CGGAAH-ARGVF----DVMPHRDTVSWNTMLTA 79

Query: 94  YSHGLDPKEALVMFCLMLD-------------------------------NGVSVDKFSA 122
           Y+H  D   A  +F  M D                                GV+ D+ + 
Sbjct: 80  YAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTL 139

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI 182
           +++LKAC  L  +  G+QIH +  K     D+   + L+ +Y +C  LE A + F  MG 
Sbjct: 140 AVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGE 199

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIF 242
           R+SVS+ + I G V++       ELF  M       +        YA           +F
Sbjct: 200 RNSVSWGAAIAGCVQNEQYTRGLELFVQM-----QRLGLGVSQPAYA----------SVF 244

Query: 243 EKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARR 302
                   +S    LH          A A+ +K     VV  A ++D YAK   +  ARR
Sbjct: 245 RSCAAITCLSTARQLH----------AHAIKNKFSADRVVGTA-IVDVYAKADSLVDARR 293

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
            F  +P   V ACNAMM G VR G   +AL++F  M     +  D  SL  V SA A++ 
Sbjct: 294 AFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMT-RSGIGFDVVSLSGVFSACAEVK 352

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
              +G+ +H    K  F ++     A++D+Y KC ++  A  VF+++E      WNA+I 
Sbjct: 353 GYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIA 412

Query: 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA-----------HAGLVKEGL-- 469
            L  +   E     L EM R  +EPDD T+  +L ACA           H   +K GL  
Sbjct: 413 ALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGL 472

Query: 470 -----------LC-FELMRRIHKLE-----PELQHYGCMVDILGRAGHIEAARNLIE--- 509
                       C   ++    KL       EL  +  ++         E A+       
Sbjct: 473 DAFVSSTVVDMYCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEML 532

Query: 510 DMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM----DSSNSSSYVLLSNMFAGLG 565
           D+ ++P+   + T+L  C N   + +G+ +   +I      D   SS+ V   +M+A  G
Sbjct: 533 DIGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLV---DMYAKCG 589

Query: 566 MWNDARRVRSMMKERNLKKLPGCSW 590
              D     S++     +KL   SW
Sbjct: 590 NMPD-----SLLMFEKAQKLDFVSW 609


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 187/631 (29%), Positives = 316/631 (50%), Gaps = 82/631 (12%)

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
           E AR +F +     +  D  +W A++  Y+   D +E +++F  M   GV  D ++ S V
Sbjct: 146 ENARRVFDE---MPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCV 202

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           LK  + LG IE+G  +HGLL K+ FGS   + N L++ Y +    + A  +FD M  RD 
Sbjct: 203 LKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDV 262

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIR-----------------ERNLISWNSVLNGY 228
           +S+NSMI G   +G  + A ELF  M +                  E +L+    V++GY
Sbjct: 263 ISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGY 322

Query: 229 AQLKSGL--------------------QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDD 268
           + +K+G                     +   +IF  M +++++SW +M+    + G  D 
Sbjct: 323 S-VKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDK 381

Query: 269 AQALFDKM-------------------PKRDVVSWANMIDGYA----------------- 292
              LF +M                      +++     + GYA                 
Sbjct: 382 VAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALME 441

Query: 293 ---KLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
              K G ++ A+ +FD +  +D+++ N ++GGY RN  + +A  +F  M   L L P+  
Sbjct: 442 MYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEML--LQLRPNAV 499

Query: 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409
           ++  +L A A L  +++G  +H Y  +  +  +     ALIDMY KCG++  A ++F+++
Sbjct: 500 TMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRL 559

Query: 410 EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
            + ++  W  M+ G  +HG G  A  L  +M    I PD  +F+ +L AC+H+GL  EG 
Sbjct: 560 SNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGW 619

Query: 470 LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRN 529
             F+ MR+ HK+EP L+HY CMVD+L   G+++ A   I+ MP+EP+  IW +LL  CR 
Sbjct: 620 RFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRI 679

Query: 530 YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCS 589
           + N+ + E VA+ +  ++  N+  YVLL+N++A    W   R++++ +  R L++  GCS
Sbjct: 680 HRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGGRGLRENTGCS 739

Query: 590 WIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           WIE +G VH F   +++  Q   I   L+ +
Sbjct: 740 WIEAKGKVHVFIADNRNHPQGTRIAEFLNEV 770



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 185/418 (44%), Gaps = 41/418 (9%)

Query: 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQL 176
           VD  S   VL+ CS +  +E G + H L+R  + G D                       
Sbjct: 89  VDDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGM--------------------- 127

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQ 236
                  D+V    ++  Y+K G++E+AR +FD MP +  ++  W ++++GYA+    L+
Sbjct: 128 -------DNVLGQKLVLMYLKCGDLENARRVFDEMP-QVSDVRVWTALMSGYAK-AGDLR 178

Query: 237 FAWQIFEKMP----ERDLISWNSMLHGCVKCGKMDDAQ---ALFDKMPKRDVVSWAN-MI 288
               +F KM       D  + + +L      G ++D +    L +K+      +  N ++
Sbjct: 179 EGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALM 238

Query: 289 DGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD 348
             YAK  R   A  +FD MP RDV++ N+M+ G   NG   KA+E+F  M  E     D 
Sbjct: 239 AFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGE-ELDS 297

Query: 349 ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ 408
           A+L+ VL A A+L  +  G  +H Y  K  F         L+DMYS C    +  K+F  
Sbjct: 298 ATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRN 357

Query: 409 IEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
           +   +V  W AMI      GL +    L  EM      PD    T  L+A A   L+K G
Sbjct: 358 MVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHG 417

Query: 469 LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
                   R + +E  L     ++++  + G++E A+ LI D  +  + + W TL+  
Sbjct: 418 KSVHGYAIR-NGMEKVLAVTNALMEMYVKCGNMEEAK-LIFDGVVSKDMISWNTLIGG 473



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 121/483 (25%), Positives = 206/483 (42%), Gaps = 86/483 (17%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE--KKDPFLWNAI 90
           +H   + TGFI  T L   L+  +S+  C+      +        FR   +K+   W A+
Sbjct: 319 VHGYSVKTGFISQTSLANVLLDMYSN--CSDWRSTNKI-------FRNMVQKNVVSWTAM 369

Query: 91  IKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAF 150
           I +Y+      +   +F  M   G   D F+ +  L A +   L++ G  +HG   +   
Sbjct: 370 ITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGM 429

Query: 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDS 210
              L + N L+ +YV+CG +E A+ +FD +  +D +S+N++I GY ++     A  LF  
Sbjct: 430 EKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTE 489

Query: 211 MPIRER-NLISWNSVLNGYAQLKS---GLQF-AWQIFEKMPERDLISWNSMLHGCVKCGK 265
           M ++ R N ++   +L   A L S   G +  A+ +     E D ++ N+++   VKCG 
Sbjct: 490 MLLQLRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVA-NALIDMYVKCGA 548

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
           +  A+ LFD++  ++++SW  M+ GY   GR             RD +A           
Sbjct: 549 LLLARRLFDRLSNKNLISWTIMVAGYGMHGR------------GRDAIA----------- 585

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
                   +F+ M+    + PD AS   +L A +  G  D+G      + K+        
Sbjct: 586 --------LFEQMRVS-GIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEH------- 629

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
                        IE  +K           H+  M++ L   G  + A++ +   + + I
Sbjct: 630 ------------KIEPRLK-----------HYTCMVDLLINTGNLKEAYEFI---DSMPI 663

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAA 504
           EPD   +  LL  C     VK   L  E+  R+ +LEPE   +Y  + +I   A   EA 
Sbjct: 664 EPDSSIWVSLLRGCRIHRNVK---LAEEVAERVFELEPENTGYYVLLANIYAEAERWEAV 720

Query: 505 RNL 507
           R L
Sbjct: 721 RKL 723



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 8/186 (4%)

Query: 347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH---GVALIDMYSKCGSIENAI 403
           DD S   VL   +++  ++ G   H  +       +G     G  L+ MY KCG +ENA 
Sbjct: 90  DDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENAR 149

Query: 404 KVFEQIEDGS-VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
           +VF+++   S V  W A+++G A  G       L  +M    + PD  T + +L   A  
Sbjct: 150 RVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGL 209

Query: 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVI-WR 521
           G +++G +   L+ ++     +      ++    ++   + A  + + MP    DVI W 
Sbjct: 210 GSIEDGEVVHGLLEKL-GFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHR--DVISWN 266

Query: 522 TLLSAC 527
           +++S C
Sbjct: 267 SMISGC 272


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 152/392 (38%), Positives = 247/392 (63%), Gaps = 1/392 (0%)

Query: 229 AQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMI 288
           A L+ G Q    I +   E D++   +++H   +CG ++DA  +FDKM +R   +W  MI
Sbjct: 24  ASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNAMI 83

Query: 289 DGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD 348
            G+A+   +  A +LF EM +RDVV+  A++ GY +NGY  ++L +F+ M+ +  +  D 
Sbjct: 84  TGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMR-KTGMKSDR 142

Query: 349 ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ 408
             +  VLSA A L  ++ G   H Y+ +  F+L+   G AL+DMY+K GS+E+A +VF++
Sbjct: 143 FIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDK 202

Query: 409 IEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
           +   +   WN++I G A HG G  A  L  +M +  I+P++I+F G+L+AC+H GLV EG
Sbjct: 203 MPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEG 262

Query: 469 LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACR 528
              F LM + + + P++ HY CM+D+LGRAG ++ A N I  MP+EP+  +W  LL ACR
Sbjct: 263 RGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACR 322

Query: 529 NYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGC 588
            + N  + + +A+HL+GM+   +  YVLLSN++A  G W+DA +VR +MK+R + K PG 
Sbjct: 323 IHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVMKQPGY 382

Query: 589 SWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           SWIE++ ++H F   + S  Q+++I+  L+++
Sbjct: 383 SWIEVKTIMHAFVAGETSHPQLKEIHEFLESL 414



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 200/377 (53%), Gaps = 15/377 (3%)

Query: 110 MLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY 169
           M+  GV  ++F+ S V+KAC+ +  +E+G Q H  + K+ F SD+ +Q  L+ +Y RCG 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA 229
           LE A  +FDKM  R + ++N+MI G+ ++ +++ A +LF  M   ER+++SW +V+ GYA
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMS--ERDVVSWTAVIAGYA 118

Query: 230 QLKSGLQFAWQIFEKMPERDLIS----WNSMLHGCVKCGKMDDAQALFDKMPKR----DV 281
           Q   G + +  +F +M +  + S      S+L  C     ++  +     + +     D+
Sbjct: 119 QNGYGDE-SLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDI 177

Query: 282 VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
           V  + ++D YAK G ++ A ++FD+MP+R+ V+ N+++ G  ++G    A+ +F+ M  +
Sbjct: 178 VVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQM-LQ 236

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD-QFSLNGKHGVALIDMYSKCGSIE 400
             + P++ S V VLSA +  G +++G      + ++     +  H   +ID+  + G ++
Sbjct: 237 AGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLD 296

Query: 401 NAIKVFEQIE-DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
            A      +  +  V  W A++    IHG  ELA  +   +  + ++   I +  L N  
Sbjct: 297 EAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGI-YVLLSNIY 355

Query: 460 AHAGLVKEGLLCFELMR 476
           A AG   +     +LM+
Sbjct: 356 AAAGQWDDAAKVRKLMK 372



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 139/305 (45%), Gaps = 41/305 (13%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   W A+I  Y+      E+L +F  M   G+  D+F    VL AC+ L  +E G Q
Sbjct: 104 ERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQ 163

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
            H  + +  F  D+ + + L+ +Y + G +E A Q+FDKM  R+ VS+NS+I G  + G 
Sbjct: 164 FHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGR 223

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
              A  LF+ M                   L++G++         P    IS+  +L  C
Sbjct: 224 GNDAVLLFEQM-------------------LQAGIK---------PNE--ISFVGVLSAC 253

Query: 261 VKCGKMDDAQALFDKMPKR-----DVVSWANMIDGYAKLGRVDIARRLFDEMP-KRDVVA 314
              G +++ +  F+ M +      DV  +  MID   + G +D A    + MP + DV  
Sbjct: 254 SHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSV 313

Query: 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI-AQLGHIDKGVAIHRY 373
             A++G    +G +  A  I +++   L +    A + ++LS I A  G  D    + R 
Sbjct: 314 WGALLGACRIHGNTELAKRIAEHL---LGMEVQIAGIYVLLSNIYAAAGQWDDAAKV-RK 369

Query: 374 LEKDQ 378
           L KD+
Sbjct: 370 LMKDR 374


>gi|242049708|ref|XP_002462598.1| hypothetical protein SORBIDRAFT_02g028755 [Sorghum bicolor]
 gi|241925975|gb|EER99119.1| hypothetical protein SORBIDRAFT_02g028755 [Sorghum bicolor]
          Length = 655

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 182/556 (32%), Positives = 288/556 (51%), Gaps = 48/556 (8%)

Query: 79  REKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
           R  +D   +  ++   +       A+ +F  ML   V  ++ + +  + A +R G     
Sbjct: 104 RVHRDAVSYTTLVTALARAGHAGRAVAVFRGMLSENVVPNEVTLAGAIMAFARCGAPATV 163

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
             IHG   K A    + +   L+  Y     L  AR +FD M  R++V++N+M++GYVK+
Sbjct: 164 GMIHGFALKRALDGFVIVATNLVHAYAGVLELYSARAMFDGMTHRNAVTWNAMLNGYVKA 223

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGY------------------------------ 228
             I+ A E+F  +P  ER+ +SW ++++GY                              
Sbjct: 224 EMIDMAAEVFWRIP--ERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDHEVLLV 281

Query: 229 ---------AQLKSGLQFAWQIFEKMPERDLISWNSMLH--GCVKCGKMDDAQALFDKMP 277
                    + +  G Q    I +   +       +++H  GC  CG +  AQ  F    
Sbjct: 282 DLMKACARYSAITEGQQLHTVILKNGFDAHAFVQATLVHFYGC--CGLIGLAQMAFKLSD 339

Query: 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337
           K    SW  ++    + G +  AR LFD+MP+RD V+ + M+ GYV+ G S  ALE+F +
Sbjct: 340 KSHTASWNALLAALLRKGLIHEARELFDDMPERDTVSWSTMISGYVQTGRSDMALELFYS 399

Query: 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397
           M     + P++ +L   LSAIA  G +D+G  IH ++      L       LIDMY+K G
Sbjct: 400 M-LNTSVEPNEVTLASALSAIADSGTLDQGKWIHDHIMNRPIQLTDNLSAGLIDMYAKRG 458

Query: 398 SIENAIKVFEQIED--GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGL 455
           S+ +A++ F    D   SV  WNAMI  LAIHG   ++ DL  +++R SI+P+ ITF G+
Sbjct: 459 SVADAVQFFNCASDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFIGV 518

Query: 456 LNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEP 515
           L+AC H G+V +G   FE M R + ++P ++HYGCMVD+LGRAG++E A  L+  MPM+ 
Sbjct: 519 LSACCHTGMVAKGKYYFEAMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQLVSMMPMKA 578

Query: 516 NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRS 575
           + VIW ++LSA R   N+ +GE  A+ L  +D ++ +S V LSN++A  G W +   VR 
Sbjct: 579 DVVIWGSILSAARAQGNIALGEKAAEELAKLDQTHGASKVALSNIYADAGHWTNVSVVRK 638

Query: 576 MMKERNLKKLPGCSWI 591
            +++ N ++L G S I
Sbjct: 639 ELQDENFERLVGRSGI 654



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/458 (22%), Positives = 196/458 (42%), Gaps = 78/458 (17%)

Query: 122 ASLVLKACSRLGLIEEGLQIHGLLRKVAF-GSDLFLQNCLISLYVRC-GYLEFARQLFDK 179
           A  ++ +  R   +  G Q+H L  K      + F++N ++S Y R    L  A QLFD+
Sbjct: 9   APFLVASLKRAARLRCGEQLHALAAKSGLLACNAFVRNSVLSFYSRLPSSLASALQLFDE 68

Query: 180 MG--IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF 237
               +RD+ + NS++    ++G+++ A+ L D MP   R+ +S+ +++   A+     + 
Sbjct: 69  TPAPLRDTAARNSVLAALTRAGHLDRAQRLLDEMPRVHRDAVSYTTLVTALARAGHAGR- 127

Query: 238 AWQIFEKMPERDLISWNSMLHGCV----KCG----------------------------- 264
           A  +F  M   +++     L G +    +CG                             
Sbjct: 128 AVAVFRGMLSENVVPNEVTLAGAIMAFARCGAPATVGMIHGFALKRALDGFVIVATNLVH 187

Query: 265 ------KMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
                 ++  A+A+FD M  R+ V+W  M++GY K   +D+A  +F  +P+RD V+   +
Sbjct: 188 AYAGVLELYSARAMFDGMTHRNAVTWNAMLNGYVKAEMIDMAAEVFWRIPERDEVSWLTL 247

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
           + GY+       A++ +  M  E+  +  +  LV ++ A A+   I +G  +H  + K+ 
Sbjct: 248 IDGYICADLISDAMKAYVQMVGEVGANDHEVLLVDLMKACARYSAITEGQQLHTVILKNG 307

Query: 379 FSLNGKHGVALIDMYSKC-------------------------------GSIENAIKVFE 407
           F  +      L+  Y  C                               G I  A ++F+
Sbjct: 308 FDAHAFVQATLVHFYGCCGLIGLAQMAFKLSDKSHTASWNALLAALLRKGLIHEARELFD 367

Query: 408 QIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKE 467
            + +     W+ MI+G    G  ++A +L   M   S+EP+++T    L+A A +G + +
Sbjct: 368 DMPERDTVSWSTMISGYVQTGRSDMALELFYSMLNTSVEPNEVTLASALSAIADSGTLDQ 427

Query: 468 GLLCFE-LMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504
           G    + +M R  +L   L     ++D+  + G +  A
Sbjct: 428 GKWIHDHIMNRPIQLTDNLS--AGLIDMYAKRGSVADA 463


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 172/548 (31%), Positives = 291/548 (53%), Gaps = 39/548 (7%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +++   W  +I  ++     ++A+ +F  M  +G   D+F+ S VL AC+ LGL+  G Q
Sbjct: 13  ERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQ 72

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  + ++    D+ +   L+ +Y +C                               G+
Sbjct: 73  LHSRVIRLGLALDVCVGCSLVDMYAKCA----------------------------ADGS 104

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----ISWNSM 256
           ++ +R++F+ MP  E N++SW +++  YAQ     + A ++F KM    +     S++S+
Sbjct: 105 VDDSRKVFEQMP--EHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSV 162

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVS----WANMIDGYAKLGRVDIARRLFDEMPKRDV 312
           L  C         + ++    K  + S      ++I  YA+ GR++ AR+ FD + ++++
Sbjct: 163 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNL 222

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           V+ NA++ GY +N  S +A  +F+ +  +  +     +   +LS  A +G + KG  IH 
Sbjct: 223 VSYNAIVDGYAKNLKSEEAFLLFNEI-ADTGIGISAFTFASLLSGAASIGAMGKGEQIHG 281

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
            L K  +  N     ALI MYS+CG+IE A +VF ++ED +V  W +MI G A HG    
Sbjct: 282 RLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATR 341

Query: 433 AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV 492
           A ++  +M     +P++IT+  +L+AC+H G++ EG   F  M + H + P ++HY CMV
Sbjct: 342 ALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMV 401

Query: 493 DILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552
           D+LGR+G +  A   I  MP+  + ++WRTLL ACR + N  +G   A+ ++  +  + +
Sbjct: 402 DLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPA 461

Query: 553 SYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRD 612
           +Y+LLSN+ A  G W D  ++R  MKERNL K  GCSWIE+E  VH F V + S  Q   
Sbjct: 462 AYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQ 521

Query: 613 IYYMLDNM 620
           IY  LD +
Sbjct: 522 IYQELDQL 529



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 121/457 (26%), Positives = 213/457 (46%), Gaps = 71/457 (15%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           Q+H+R+I  G   +  +   LV  ++        + +R +F +      + +   W AII
Sbjct: 72  QLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQM----PEHNVMSWTAII 127

Query: 92  KTYSH-GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAF 150
             Y+  G   KEA+ +FC M+   +  + FS S VLKAC  L     G Q++    K+  
Sbjct: 128 TAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGI 187

Query: 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDS 210
            S   + N LIS+Y R G +E AR+ FD +  ++ VSYN+++DGY K+   E A  LF+ 
Sbjct: 188 ASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNE 247

Query: 211 MPIRERNL--ISWNSVLNGYAQLKS---GLQFAWQIFEKMPERDLISWNSMLHGCVKCGK 265
           +      +   ++ S+L+G A + +   G Q   ++ +   + +    N+++    +CG 
Sbjct: 248 IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGN 307

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
           ++ A  +F++M  R+V+SW +MI G+AK                               +
Sbjct: 308 IEAAFQVFNEMEDRNVISWTSMITGFAK-------------------------------H 336

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
           G++ +ALE+F  M  E    P++ + V VLSA + +G I +G       +K   S+  +H
Sbjct: 337 GFATRALEMFHKM-LETGTKPNEITYVAVLSACSHVGMISEG-------QKHFNSMYKEH 388

Query: 386 GVA--------LIDMYSKCGSIENAIKVFEQ---IEDGSVDHWNAMINGLAIHG---LGE 431
           G+         ++D+  + G +  A++       + D  V  W  ++    +HG   LG 
Sbjct: 389 GIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALV--WRTLLGACRVHGNTELGR 446

Query: 432 LAFDLLMEMERLSIEPDD-ITFTGLLNACAHAGLVKE 467
            A ++++E      EPDD   +  L N  A AG  K+
Sbjct: 447 HAAEMILEQ-----EPDDPAAYILLSNLHASAGQWKD 478



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 160/367 (43%), Gaps = 50/367 (13%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+ C  L+D     Q+++  +  G      +   L++ ++ S        A  I F+  
Sbjct: 162 VLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFE-- 219

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
                K+   +NAI+  Y+  L  +EA ++F  + D G+ +  F+ + +L   + +G + 
Sbjct: 220 -----KNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMG 274

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           +G QIHG L K  + S+  + N LIS+Y RCG +E A Q+F++M  R+ +S+ SMI G+ 
Sbjct: 275 KGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFA 334

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
           K G    A E+F  M                               E   + + I++ ++
Sbjct: 335 KHGFATRALEMFHKM------------------------------LETGTKPNEITYVAV 364

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVV-----SWANMIDGYAKLGRVDIARRLFDEMP-KR 310
           L  C   G + + Q  F+ M K   +      +A M+D   + G +  A    + MP   
Sbjct: 365 LSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMA 424

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI-AQLGHIDKGVA 369
           D +    ++G    +G +       + +   L   PDD +  I+LS + A  G     V 
Sbjct: 425 DALVWRTLLGACRVHGNTELGRHAAEMI---LEQEPDDPAAYILLSNLHASAGQWKDVVK 481

Query: 370 IHRYLEK 376
           I + +++
Sbjct: 482 IRKSMKE 488



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 175/416 (42%), Gaps = 97/416 (23%)

Query: 269 AQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYS 328
           A  +FDKMP+R++V+W  MI  +A+LG    A  LF +M           + GYV     
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDME----------LSGYV----- 48

Query: 329 MKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVA 388
                            PD  +   VLSA  +LG +  G  +H  + +   +L+   G +
Sbjct: 49  -----------------PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCS 91

Query: 389 LIDMYSKC---GSIENAIKVFEQIEDGSVDHWNAMINGLAIHG-LGELAFDLLMEMERLS 444
           L+DMY+KC   GS++++ KVFEQ+ + +V  W A+I   A  G   + A +L  +M    
Sbjct: 92  LVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGH 151

Query: 445 IEPDDITFTGLLNAC-----------------------------------AHAGLVKEGL 469
           I P+  +F+ +L AC                                   A +G +++  
Sbjct: 152 IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDAR 211

Query: 470 LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR-----NLIEDMPMEPNDVIWRTLL 524
             F+++      E  L  Y  +VD  G A ++++       N I D  +  +   + +LL
Sbjct: 212 KAFDIL-----FEKNLVSYNAIVD--GYAKNLKSEEAFLLFNEIADTGIGISAFTFASLL 264

Query: 525 SACRNYENLNVGEPVAKHLI-GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583
           S   +   +  GE +   L+ G   SN      L +M++  G    A +V + M++RN+ 
Sbjct: 265 SGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNV- 323

Query: 584 KLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPD-----SVATSCTHYG 634
                SW  +   +  F     +   +   + ML+    P+     +V ++C+H G
Sbjct: 324 ----ISWTSM---ITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVG 372


>gi|224083626|ref|XP_002307076.1| predicted protein [Populus trichocarpa]
 gi|222856525|gb|EEE94072.1| predicted protein [Populus trichocarpa]
          Length = 733

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 181/548 (33%), Positives = 294/548 (53%), Gaps = 51/548 (9%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV---LKACSRLGLIEEG 138
           +D   W A++  Y H  D ++ L   C M   G   +K ++  +    +AC  LG +  G
Sbjct: 195 RDVVSWTALVIGYVHNDDSEKGLECLCEMRRIGGDGEKVNSRTLEGGFQACGNLGAMIAG 254

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
             +HGL  K   G    +Q+ L+S+Y +CG +E A   F ++  +D  S+ S+I    + 
Sbjct: 255 RCLHGLAVKTGLGCSQVVQSSLLSMYSKCGNVEEAHNSFCQVVDKDVFSWTSVIGVCARF 314

Query: 199 GNIESARELF-----------------------DSMPIRE----------RNLI----SW 221
           G +     LF                       +SM +RE          RN +      
Sbjct: 315 GFMNECLNLFWDMQVDDVYPDGIVVSCILLGFGNSMMVREGKAFHGLIVRRNYVLDDTVN 374

Query: 222 NSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV 281
           N++L+ Y +  + L  A ++F+ + E    SWN+M+ G V C        +       DV
Sbjct: 375 NALLSMYCKFGT-LNPAEKLFDGVHEWSKESWNTMVFGYVHC-------YIIKNSVDEDV 426

Query: 282 VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341
               ++ID Y K G + IA ++F    +RDVV  N ++  Y  +G+  +A+ +FD M  E
Sbjct: 427 SIANSLIDMYGKGGNLSIAWKMFCR-TQRDVVTWNTLISSYTHSGHYAEAITLFDEMISE 485

Query: 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIEN 401
             L+P+ A+LVIVLSA   L  ++KG  +H+Y+++  F LN   G AL+DMY+KCG +E 
Sbjct: 486 -KLNPNSATLVIVLSACCHLPSLEKGKMVHQYIKEGGFELNVSLGTALVDMYAKCGQLEQ 544

Query: 402 AIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461
           + ++F  +++  V  WN MI+G  +HG    A ++  +ME+ +++P+ ITF  LL+AC H
Sbjct: 545 SRELFNSMKEKDVISWNVMISGYGLHGDANSAMEVFQQMEQSNVKPNAITFLSLLSACTH 604

Query: 462 AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWR 521
           AG V EG   F+ M + + ++P L+H+ CM D+LGR+G+++ A +L++ MP+ P+  +W 
Sbjct: 605 AGYVDEGKQLFDRM-QYYSIKPNLKHFACMADLLGRSGNLQEAEDLVQSMPICPDGGVWG 663

Query: 522 TLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581
           TLLSAC+ +  + +G  VAK  I  D  N   Y++LSNM+  +G W++A R R +MKER 
Sbjct: 664 TLLSACKIHNEIEIGIRVAKCAIESDPENDGYYIMLSNMYGSMGKWDEAERARELMKERG 723

Query: 582 LKKLPGCS 589
           + K  G S
Sbjct: 724 IGKRAGWS 731



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 135/549 (24%), Positives = 244/549 (44%), Gaps = 60/549 (10%)

Query: 19  LLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAF 78
            L  + +TL  +++ HA +ITTG   N  +++KL++ ++S    P +  + Y+F      
Sbjct: 37  FLSNQTQTLQSLHKSHALIITTGNANNVFISSKLISLYASFR-KPHS--STYVFDS---- 89

Query: 79  REKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
             +KD FLWN+IIK++    +  +A   +  M  +    ++F+  +++  C+ L  +EEG
Sbjct: 90  TNQKDTFLWNSIIKSHFSNGNYFKAFDFYIQMRYDNTPPNQFTIPMIVATCAELLWLEEG 149

Query: 139 LQIHGLLRKVA-FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
             IHGL+ K   F  +  + +  + +Y +CG +E A  +FD++ +RD VS+ +++ GYV 
Sbjct: 150 KYIHGLVSKSGLFAENSAVGSSFVYMYAKCGVMEDASLMFDEIVVRDVVSWTALVIGYVH 209

Query: 198 SGNIESARELF--------DSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERD 249
           + + E   E          D   +  R L            + +G        +      
Sbjct: 210 NDDSEKGLECLCEMRRIGGDGEKVNSRTLEGGFQACGNLGAMIAGRCLHGLAVKTGLGCS 269

Query: 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF----- 304
            +  +S+L    KCG +++A   F ++  +DV SW ++I   A+ G ++    LF     
Sbjct: 270 QVVQSSLLSMYSKCGNVEEAHNSFCQVVDKDVFSWTSVIGVCARFGFMNECLNLFWDMQV 329

Query: 305 -DEMPKRDVVAC------NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
            D  P   VV+C      N+MM   VR G +   L +  N         DD     +LS 
Sbjct: 330 DDVYPDGIVVSCILLGFGNSMM---VREGKAFHGLIVRRNYVL------DDTVNNALLSM 380

Query: 358 IAQLGHIDK------GVA--------------IHRYLEKDQFSLNGKHGVALIDMYSKCG 397
             + G ++       GV               +H Y+ K+    +     +LIDMY K G
Sbjct: 381 YCKFGTLNPAEKLFDGVHEWSKESWNTMVFGYVHCYIIKNSVDEDVSIANSLIDMYGKGG 440

Query: 398 SIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
           ++  A K+F + +   V  WN +I+     G    A  L  EM    + P+  T   +L+
Sbjct: 441 NLSIAWKMFCRTQRDVVT-WNTLISSYTHSGHYAEAITLFDEMISEKLNPNSATLVIVLS 499

Query: 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND 517
           AC H   +++G +  + ++     E  +     +VD+  + G +E +R L   M  E + 
Sbjct: 500 ACCHLPSLEKGKMVHQYIKE-GGFELNVSLGTALVDMYAKCGQLEQSRELFNSMK-EKDV 557

Query: 518 VIWRTLLSA 526
           + W  ++S 
Sbjct: 558 ISWNVMISG 566



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 113/234 (48%), Gaps = 34/234 (14%)

Query: 79  REKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEG 138
           R ++D   WN +I +Y+H     EA+ +F  M+   ++ +  +  +VL AC  L  +E+G
Sbjct: 451 RTQRDVVTWNTLISSYTHSGHYAEAITLFDEMISEKLNPNSATLVIVLSACCHLPSLEKG 510

Query: 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
             +H  +++  F  ++ L   L+ +Y +CG LE +R+LF+ M  +D +S+N MI GY   
Sbjct: 511 KMVHQYIKEGGFELNVSLGTALVDMYAKCGQLEQSRELFNSMKEKDVISWNVMISGYGLH 570

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLH 258
           G+  SA E+F  M   E++ +  N+                           I++ S+L 
Sbjct: 571 GDANSAMEVFQQM---EQSNVKPNA---------------------------ITFLSLLS 600

Query: 259 GCVKCGKMDDAQALFDKMP----KRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
            C   G +D+ + LFD+M     K ++  +A M D   + G +  A  L   MP
Sbjct: 601 ACTHAGYVDEGKQLFDRMQYYSIKPNLKHFACMADLLGRSGNLQEAEDLVQSMP 654



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 123/286 (43%), Gaps = 57/286 (19%)

Query: 8   NQPCNSTQSTLLL-LRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTP 63
           ++  N   +TL++ L  C    +L     +H  +   GF  N  L T LV  ++   C  
Sbjct: 484 SEKLNPNSATLVIVLSACCHLPSLEKGKMVHQYIKEGGFELNVSLGTALVDMYA--KCGQ 541

Query: 64  LTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSAS 123
           L E +R +F   ++ +EK D   WN +I  Y    D   A+ +F  M  + V  +  +  
Sbjct: 542 L-EQSRELF---NSMKEK-DVISWNVMISGYGLHGDANSAMEVFQQMEQSNVKPNAITFL 596

Query: 124 LVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM--- 180
            +L AC+  G ++EG                                   +QLFD+M   
Sbjct: 597 SLLSACTHAGYVDEG-----------------------------------KQLFDRMQYY 621

Query: 181 GIRDSVS-YNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNG---YAQLKSGLQ 236
            I+ ++  +  M D   +SGN++ A +L  SMPI     + W ++L+    + +++ G++
Sbjct: 622 SIKPNLKHFACMADLLGRSGNLQEAEDLVQSMPICPDGGV-WGTLLSACKIHNEIEIGIR 680

Query: 237 FAWQIFEKMPERD-LISWNSMLHGCVKCGKMDDAQALFDKMPKRDV 281
            A    E  PE D      S ++G +  GK D+A+   + M +R +
Sbjct: 681 VAKCAIESDPENDGYYIMLSNMYGSM--GKWDEAERARELMKERGI 724


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 180/540 (33%), Positives = 279/540 (51%), Gaps = 43/540 (7%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           +NA+I  Y+      +A  +F  +  N  S D+ S S  L A + +    EGLQ+HGL  
Sbjct: 327 YNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAI 386

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
           K    S++ + N ++ +Y +C                               G +  A  
Sbjct: 387 KSNLSSNICVANAILDMYGKC-------------------------------GALVEASG 415

Query: 207 LFDSMPIRERNLISWNSVLNGYAQLKSG----LQFAWQIFEKMPERDLISWNSMLHGCVK 262
           LFD M IR+   +SWN+++    Q +S       F   +  KM E D  ++ S+L  C  
Sbjct: 416 LFDEMEIRDP--VSWNAIITACEQNESEGKTLSHFGAMLRSKM-EPDEFTYGSVLKACAG 472

Query: 263 CGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
                +   +  ++ K      +   + ++D Y+K G ++ A ++   + ++ +V+ NA+
Sbjct: 473 QRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAI 532

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
           + G+     S  +   F +M  E+ + PD+ +   VL   A L  +  G  IH  + K +
Sbjct: 533 ISGFSLQKKSEDSQRFFSHM-LEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLE 591

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
              +      L+DMYSKCG++ +++ +F +        WNAMI G A HGLGE A +L  
Sbjct: 592 LLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAYHGLGEEALELFE 651

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498
            M   +I+P+  TF  +L AC+H G  K+GL  F+ M  I+ LEP+L+HY CMVDILGR+
Sbjct: 652 HMLHENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQLEHYSCMVDILGRS 711

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558
           G +E A  LI+DMP E + +IWRTLLS C+   N+ V E  A  L+ +D  +SS+Y LLS
Sbjct: 712 GQVEEALRLIQDMPFEADAIIWRTLLSICKIQGNVEVAEKAASSLLKLDPEDSSAYTLLS 771

Query: 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD 618
           N++A  GMW    ++R  M+  NLKK PGCSWIE++  VH F V DK+  +   IY +LD
Sbjct: 772 NIYADAGMWQQVSKIRQTMRSHNLKKEPGCSWIEVKDEVHTFLVCDKAHPKCEMIYSLLD 831



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 142/553 (25%), Positives = 267/553 (48%), Gaps = 69/553 (12%)

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI 182
           S + + CS    ++ G + H  +    F   +F+ NCLI +YV+C  LE+A ++F++M  
Sbjct: 28  SHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEMPQ 87

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIF 242
           RD VS+N+M+ G   +G +E A+ +F+SMP    +++SWNS+++GY Q    +Q +  +F
Sbjct: 88  RDIVSWNTMVFGCAGAGRMELAQAVFNSMP-HHGDVVSWNSLISGYLQ-NGDIQKSIAVF 145

Query: 243 EKMPERDLISWNSMLHGCVK-CGKMDD-----------AQALFDKMPKRDVVSWANMIDG 290
            KM +  ++  ++ L   +K C  ++D            Q  FD     DVV+ + ++D 
Sbjct: 146 LKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFD----YDVVTGSALVDM 201

Query: 291 YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
           YAK   ++ +  +F E+P ++ ++ +A + G V+N   ++ L++F  MQ    +    ++
Sbjct: 202 YAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQ-RKGIGVSQST 260

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE 410
              V  + A L     G  +H +  K  F  +   G A +DMY+KC ++ +A K+F  + 
Sbjct: 261 YASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLP 320

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470
           D ++  +NAMI G A +  G  AF L +++++ S   D+++ +G L+A A      EGL 
Sbjct: 321 DHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQ 380

Query: 471 CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM------------------- 511
              L  +   L   +     ++D+ G+ G +  A  L ++M                   
Sbjct: 381 LHGLAIK-SNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNE 439

Query: 512 ---------------PMEPNDVIWRTLLSAC---RNYEN-LNVGEPVAKHLIGMDSSNSS 552
                           MEP++  + ++L AC   R + N + V   + K  +G+     S
Sbjct: 440 SEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGS 499

Query: 553 SYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRD 612
           + V   +M++  GM  +A ++   ++E+ +      SW     ++  F ++ KS    R 
Sbjct: 500 ALV---DMYSKCGMMEEAEKIHYRLEEQTM-----VSW---NAIISGFSLQKKSEDSQRF 548

Query: 613 IYYMLDNMWTPDS 625
             +ML+    PD+
Sbjct: 549 FSHMLEMGVEPDN 561



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 136/602 (22%), Positives = 249/602 (41%), Gaps = 107/602 (17%)

Query: 25  KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK---------- 74
           + L    + HA MI +GF     +T  L+  +    C  L E+A  +F +          
Sbjct: 38  RALKPGKEAHAHMILSGFTPTVFVTNCLIQMYV--KCCAL-EYAYKVFEEMPQRDIVSWN 94

Query: 75  ------------------YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVS 116
                             +++     D   WN++I  Y    D ++++ +F  M D GV 
Sbjct: 95  TMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMRDLGVM 154

Query: 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQL 176
            D  + ++ LK CS L     G+QIHG+  ++ F  D+   + L+ +Y +C  LE +  +
Sbjct: 155 FDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDV 214

Query: 177 FDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNL--ISWNSVLNGYAQLKS- 233
           F ++  ++ +S+++ I G V++  +    +LF  M  +   +   ++ SV    A L + 
Sbjct: 215 FSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSAS 274

Query: 234 --GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGY 291
             G Q      +     D+I   + L    KC  M DA  LF  +P  ++ S+  MI GY
Sbjct: 275 RLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGY 334

Query: 292 AKLGRVDIARRLFDEMPKR---------------------------------------DV 312
           A+  +   A +LF ++ K                                        ++
Sbjct: 335 ARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNI 394

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQ-------------CEL----------------- 342
              NA++  Y + G  ++A  +FD M+             CE                  
Sbjct: 395 CVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRS 454

Query: 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENA 402
            + PD+ +   VL A A       G+ +H  + K    L    G AL+DMYSKCG +E A
Sbjct: 455 KMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEA 514

Query: 403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
            K+  ++E+ ++  WNA+I+G ++    E +      M  + +EPD+ T+  +L+ CA+ 
Sbjct: 515 EKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANL 574

Query: 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRT 522
             V  G      M ++ +L  ++     +VD+  + G++  +  +    P + + V W  
Sbjct: 575 ATVGLGKQIHAQMIKL-ELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAP-KRDSVTWNA 632

Query: 523 LL 524
           ++
Sbjct: 633 MI 634



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/417 (26%), Positives = 199/417 (47%), Gaps = 51/417 (12%)

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
           E +DP  WNAII          + L  F  ML + +  D+F+   VLKAC+       G+
Sbjct: 421 EIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGM 480

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           ++HG + K   G  +F+ + L+ +Y +CG +E A ++  ++  +  VS+N++I G+    
Sbjct: 481 EVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQK 540

Query: 200 NIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLIS----W 253
             E ++  F  M     E +  ++ +VL+  A L + +    QI  +M + +L+S     
Sbjct: 541 KSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLAT-VGLGKQIHAQMIKLELLSDVYIT 599

Query: 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
           ++++    KCG M D+  +F K PKRD V+W  MI G+A                     
Sbjct: 600 STLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFA--------------------- 638

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRY 373
                      +G   +ALE+F++M  E  + P+ A+ V VL A + +G+  KG+    Y
Sbjct: 639 ----------YHGLGEEALELFEHMLHE-NIKPNHATFVSVLRACSHVGNAKKGLF---Y 684

Query: 374 LEK--DQFSLNGK--HGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHG 428
            +K    ++L  +  H   ++D+  + G +E A+++ + +  +     W  +++   I G
Sbjct: 685 FQKMASIYALEPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAIIWRTLLSICKIQG 744

Query: 429 LGELAFDLLMEMERLSIEPDDIT-FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484
             E+A      +  L ++P+D + +T L N  A AG+ ++     + MR  H L+ E
Sbjct: 745 NVEVAEKAASSL--LKLDPEDSSAYTLLSNIYADAGMWQQVSKIRQTMRS-HNLKKE 798



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 148/306 (48%), Gaps = 25/306 (8%)

Query: 20  LLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+ C   +  ++  ++H R+I +G      + + LV  +S   C  + E       K H
Sbjct: 466 VLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYS--KCGMMEEAE-----KIH 518

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
              E++    WNAII  +S     +++   F  ML+ GV  D F+ + VL  C+ L  + 
Sbjct: 519 YRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVG 578

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G QIH  + K+   SD+++ + L+ +Y +CG +  +  +F K   RDSV++N+MI G+ 
Sbjct: 579 LGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFA 638

Query: 197 KSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQL---KSGLQFAWQIFEKMP----- 246
             G  E A ELF+ M     + N  ++ SVL   + +   K GL +    F+KM      
Sbjct: 639 YHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFY----FQKMASIYAL 694

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRLFD 305
           E  L  ++ M+    + G++++A  L   MP + D + W  ++      G V++A +   
Sbjct: 695 EPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAIIWRTLLSICKIQGNVEVAEKAAS 754

Query: 306 EMPKRD 311
            + K D
Sbjct: 755 SLLKLD 760


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 205/686 (29%), Positives = 323/686 (47%), Gaps = 118/686 (17%)

Query: 42  FIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPK 101
           FI    L TK+ +   SS C P+   A       H   +      +NA I  +    D +
Sbjct: 31  FIHKPSLKTKIFSPIFSS-CIPIRISATPTRTIDHQVTD------YNAKILHFCQLGDLE 83

Query: 102 EALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLI 161
            A+ + C+   + +    +S+  VL+ C+ L    +G ++H +++  + G D  L   L+
Sbjct: 84  NAMELICMCKKSELETKTYSS--VLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLV 141

Query: 162 SLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI-------------------- 201
           S Y  CG L+  R++FD M  ++   +N M+  Y K G+                     
Sbjct: 142 SFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRP 201

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAWQIFEKMPERDLISWNSMLH 258
           ESA ELFD +   +R++ISWNS+++GY      + GL    Q+     + DL +  S+L 
Sbjct: 202 ESAFELFDKLC--DRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 259

Query: 259 GCV-----------------------------------KCGKMDDAQALFDKMPKRDVVS 283
           GC                                    KCG +D A  +F+KM +R+VVS
Sbjct: 260 GCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 319

Query: 284 WANMIDGYAKLGRVDIARRLFDEMPKR----DVVA------------------------- 314
           W +MI GY + GR D A +L  +M K     DVVA                         
Sbjct: 320 WTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIK 379

Query: 315 ----------CNAMMGGYVRNGYSMKALEIFDNMQCELY---------LHPDDASLVIVL 355
                     CNA+M  Y + G    A  +F  M  +           L PD  ++  VL
Sbjct: 380 ANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVL 439

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
            A A L  +++G  IH Y+ ++ +S +     AL+D+Y KCG +  A  +F+ I    + 
Sbjct: 440 PACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLV 499

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475
            W  MI G  +HG G  A     EM    IEPD+++F  +L AC+H+GL+++G   F +M
Sbjct: 500 SWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIM 559

Query: 476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNV 535
           +    +EP+L+HY CMVD+L R G++  A   IE +P+ P+  IW  LL  CRNY ++ +
Sbjct: 560 KNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIEL 619

Query: 536 GEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEG 595
            E VA+ +  ++  NS  YVLL+N++A    W + +R+R  + ++ L+K PGCSWIE++G
Sbjct: 620 AEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKG 679

Query: 596 VVHEFFV-RDKSRLQVRDIYYMLDNM 620
            V+ F    + S    ++I  +L  M
Sbjct: 680 KVNLFVSGNNSSHPHSKNIESLLKKM 705


>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
          Length = 545

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 174/470 (37%), Positives = 263/470 (55%), Gaps = 11/470 (2%)

Query: 161 ISLYVRCGYLEFAR-----QLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRE 215
           IS  +   Y EF R     +LFD++   D +S+ S++  ++K  +   A  +F       
Sbjct: 55  ISCKIFRSYAEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASG 114

Query: 216 RN-----LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQ 270
                   +   S   G    + G      IF    + +L+  N+++    +CGK + A+
Sbjct: 115 HRPDGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPAR 174

Query: 271 ALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMK 330
            +FD+M  +D V+W +M+ GY K   VD A   F +MP +  V+  A++ G+V++   ++
Sbjct: 175 TVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQ 234

Query: 331 ALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI 390
           ALE+F  M  E +  P+  ++V VLSA A +G +D G AIH Y  K   + N     AL+
Sbjct: 235 ALELFGKMLLEGH-RPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALM 293

Query: 391 DMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450
           DMY+K GSI +A  VFE+++      W  MI+   + G G  A +L  +M R  I P+ +
Sbjct: 294 DMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSV 353

Query: 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIED 510
           TF  +L+AC+HAGL++EG   F+ MR ++ ++P L+HYGCMVD+LGR G +E A  LI+ 
Sbjct: 354 TFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDH 413

Query: 511 MPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDA 570
           M +EP+ VIWR+LLSAC  + N  + E   K +I  +  +   YVLL NM+A    W +A
Sbjct: 414 MDVEPDIVIWRSLLSACLAHGNDRLAEIAGKEIIKREPGDDGVYVLLWNMYALSNRWKEA 473

Query: 571 RRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
             +R  M  R + K PGCSWIE++GVVHEF V DKS    R+IY  L+ M
Sbjct: 474 LDMRKQMLSRKIYKKPGCSWIEVDGVVHEFLVEDKSHDARREIYVTLEIM 523



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 128/477 (26%), Positives = 230/477 (48%), Gaps = 31/477 (6%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTH-LTTKLVASFSSSPCTPLTEFARYIFFKYHAF 78
           LL +CKT+ ++ +IHA+ +T G   N   ++ K+  S++        EF R        F
Sbjct: 26  LLTQCKTIRELQRIHAQALTHGLHPNQQSISCKIFRSYA--------EFGRPADAG-RLF 76

Query: 79  REKKDPFL--WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
            E   P +  + +++  +       +A+ +F   + +G   D F+A   L A   LG   
Sbjct: 77  DEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQR 136

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G  +HGL+ +    S+L + N L+ +Y RCG  E AR +FD+M ++D V++ SM+ GY+
Sbjct: 137 IGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYM 196

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM----PERDLIS 252
           K   ++SA   F  MP+  ++ +SW +++ G+ Q K  +Q A ++F KM       + I+
Sbjct: 197 KCVGVDSALSFFYQMPM--KSTVSWTALITGHVQDKQPIQ-ALELFGKMLLEGHRPNHIT 253

Query: 253 WNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMP 308
              +L  C   G +D  +A+     K     +++    ++D YAK G +  A  +F+E+ 
Sbjct: 254 IVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQ 313

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            +D      M+  +   G   KA+E+F +M     L P+  + V VLSA +  G I +G 
Sbjct: 314 MKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGIL-PNSVTFVSVLSACSHAGLIQEGR 372

Query: 369 AI-HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAI 426
            +  +  E        +H   ++D+  + G +E A  + + ++ +  +  W ++++    
Sbjct: 373 ELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSACLA 432

Query: 427 HGLGELAFDLLMEMERLSIEP-DDITFTGLLNACAHAGLVKEGLLCFELM--RRIHK 480
           HG   LA   +   E +  EP DD  +  L N  A +   KE L   + M  R+I+K
Sbjct: 433 HGNDRLA--EIAGKEIIKREPGDDGVYVLLWNMYALSNRWKEALDMRKQMLSRKIYK 487


>gi|449454362|ref|XP_004144924.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 178/526 (33%), Positives = 286/526 (54%), Gaps = 50/526 (9%)

Query: 110 MLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY 169
           M D     D  S + +L   ++ G++++  ++   + +     ++   N ++S Y+  G+
Sbjct: 143 MFDQMPETDCVSWNTMLSGYAKSGMMDKAEELFNEMPE----RNVVSWNAMVSGYLMNGH 198

Query: 170 LEFARQLFDKMGIRDSVS------------------------------------YNSMID 193
           +E A + F  M  RDS S                                    YN++I 
Sbjct: 199 VEKAIEFFKLMPKRDSASLRALISGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIA 258

Query: 194 GYVKSGNIESARELFDSMPI------RERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
           GY + G    AR+LFD +P+        RN+ISWNS++  Y +    +  A ++F+KM E
Sbjct: 259 GYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVR-AGDIVSARELFDKMVE 317

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
           RD  SWN+M+ G V+   M +A  LF +MP+ D +SW  MI G++++G + +A  LF  +
Sbjct: 318 RDTFSWNTMISGYVQILDMKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRI 377

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
           P++ +V+ N+M+ GY +N     A+ IF  MQ E    PD  +L  +LSA A L  +  G
Sbjct: 378 PEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGK-KPDRHTLSSILSACAGLVDLVLG 436

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAI 426
             IH+ + K  F  +     +L+ MYS+CG+I  A  VF+++     V  WNAMI G A 
Sbjct: 437 TQIHQLVTK-AFIADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAY 495

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           HG    A  L   M++ +++P  ITF  +LNACAHAGL++EG   F  M   H ++P+++
Sbjct: 496 HGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVE 555

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HY  +VDI+GR G +E A +LI  MP EP+  +W  LL AC+ + N+ +    A+ L+ +
Sbjct: 556 HYAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGALLGACKVHNNVEMARAAAEALMKL 615

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
              +S+ YVLL NM+A +G W+DA  +R+MM++ N++K  G S ++
Sbjct: 616 QPESSAPYVLLHNMYADVGRWDDAAEMRTMMEKNNVQKDAGYSRVD 661



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 127/446 (28%), Positives = 215/446 (48%), Gaps = 85/446 (19%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           + +  N  IS  +R G +  AR+LFD     +++++N MI  YVK   +  AR+LF+ MP
Sbjct: 56  EFYSLNKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMP 115

Query: 213 IRERNLISWNSVLNGYAQLKSGLQF---AWQIFEKMPERDLISWNSMLHGCVKCGKMDDA 269
              R+++SWN +L+GY  +  G +F   A  +F++MPE D +SWN+ML G  K G MD A
Sbjct: 116 --NRDIVSWNLMLSGY--ISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGMMDKA 171

Query: 270 QALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD------------------ 311
           + LF++MP+R+VVSW  M+ GY   G V+ A   F  MPKRD                  
Sbjct: 172 EELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALISGLIQNDKLV 231

Query: 312 ------------------VVACNAMMGGYVRNGYSMKALEIFDNMQ--CEL-YLHPDDAS 350
                             V A N ++ GY + G + +A ++FD +   C+  Y   +  S
Sbjct: 232 EAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVIS 291

Query: 351 LVIVLSAIAQLGHIDKGVAIH-RYLEKDQFSLNG--KHGVALIDM--------------- 392
              ++    + G I     +  + +E+D FS N      V ++DM               
Sbjct: 292 WNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPEPDT 351

Query: 393 ---------YSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
                    +S+ GS++ A  +F++I + S+  WN+MI+G   +   + A ++ ++M+  
Sbjct: 352 LSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLE 411

Query: 444 SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE-----PELQHYGCMVDILGRA 498
             +PD  T + +L+ACA       GL+   L  +IH+L       +L     +V +  R 
Sbjct: 412 GKKPDRHTLSSILSACA-------GLVDLVLGTQIHQLVTKAFIADLPINNSLVTMYSRC 464

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLL 524
           G I  AR + ++M ++ + + W  ++
Sbjct: 465 GAIVEARMVFDEMNLQRDVISWNAMI 490



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 138/465 (29%), Positives = 223/465 (47%), Gaps = 79/465 (16%)

Query: 172 FARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQL 231
           F+    +   + +  S N  I   +++G I  ARELFDS      N I+WN ++  Y + 
Sbjct: 44  FSSSKANSFQVPEFYSLNKKISYLIRTGRINEARELFDS--TEHWNTITWNRMITAYVKR 101

Query: 232 KSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGK--MDDAQALFDKMPKRDVVSWANMID 289
           +  L+ A Q+FE+MP RD++SWN ML G + CG   ++ A+ +FD+MP+ D VSW  M+ 
Sbjct: 102 REMLK-ARQLFEEMPNRDIVSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLS 160

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
           GYAK G +D A  LF+EMP+R+VV+ NAM+ GY+ NG+  KA+E F     +L    D A
Sbjct: 161 GYAKSGMMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFF-----KLMPKRDSA 215

Query: 350 SLVIVLSAIAQL--------------GHIDKGVAIHRYLEKDQFSLNGKHGVA------- 388
           SL  ++S + Q               G++ KG  +  Y      +  G+ G+A       
Sbjct: 216 SLRALISGLIQNDKLVEAERILLQYGGNVGKGDLVDAY--NTLIAGYGQKGMAYEARKLF 273

Query: 389 ---------------------LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING-LAI 426
                                +I  Y + G I +A ++F+++ +     WN MI+G + I
Sbjct: 274 DRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQI 333

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
             + E A +L   M     EPD +++  +++  +  G +K   L  +L +RI   E  L 
Sbjct: 334 LDMKE-ASNLFSRMP----EPDTLSWNMMISGFSEIGSLK---LAHDLFKRIP--EKSLV 383

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPME---PNDVIWRTLLSACRNYENLNVG----EPV 539
            +  M+    +    + A N+   M +E   P+     ++LSAC    +L +G    + V
Sbjct: 384 SWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLV 443

Query: 540 AKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKK 584
            K  I     N+S    L  M++  G   +AR V     E NL++
Sbjct: 444 TKAFIADLPINNS----LVTMYSRCGAIVEARMV---FDEMNLQR 481



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 156/381 (40%), Gaps = 89/381 (23%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D F WN +I  Y   LD KEA  +F  M +                            
Sbjct: 317 ERDTFSWNTMISGYVQILDMKEASNLFSRMPE---------------------------- 348

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
                       D    N +IS +   G L+ A  LF ++  +  VS+NSMI GY K+ +
Sbjct: 349 -----------PDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNED 397

Query: 201 IESARELFDSMPIRER-----NLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
            + A  +F  M +  +      L S  S   G   L  G Q   Q+  K    DL   NS
Sbjct: 398 YKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIH-QLVTKAFIADLPINNS 456

Query: 256 MLHGCVKCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
           ++    +CG + +A+ +FD+M  +RDV+SW  MI GYA                      
Sbjct: 457 LVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYA---------------------- 494

Query: 315 CNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKG-VAIHR 372
                     +G++ +AL++FD M QC   + P   + + VL+A A  G I++G    + 
Sbjct: 495 ---------YHGFATEALQLFDLMKQCN--VQPSYITFISVLNACAHAGLIEEGRREFNS 543

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI---EDGSVDHWNAMINGLAIHG- 428
            +         +H  AL+D+  + G +E A+ +   +    D +V  W A++    +H  
Sbjct: 544 MVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKAV--WGALLGACKVHNN 601

Query: 429 --LGELAFDLLMEMERLSIEP 447
             +   A + LM+++  S  P
Sbjct: 602 VEMARAAAEALMKLQPESSAP 622



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 116/271 (42%), Gaps = 51/271 (18%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L  C  L D+    QIH +++T  FI +  +   LV  +S   C  + E AR +F + +
Sbjct: 423 ILSACAGLVDLVLGTQIH-QLVTKAFIADLPINNSLVTMYSR--CGAIVE-ARMVFDEMN 478

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
               ++D   WNA+I  Y++     EAL +F LM    V     +   VL AC+  GLIE
Sbjct: 479 L---QRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIE 535

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS-YNSMIDGY 195
           EG +                              EF   + +  GI+  V  Y +++D  
Sbjct: 536 EGRR------------------------------EF-NSMVNTHGIKPQVEHYAALVDII 564

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM----PERDLI 251
            + G +E A  L +SMP  E +   W ++L G  ++ + ++ A    E +    PE    
Sbjct: 565 GRHGQLEEAMSLINSMPC-EPDKAVWGALL-GACKVHNNVEMARAAAEALMKLQPESS-- 620

Query: 252 SWNSMLHGC-VKCGKMDDAQALFDKMPKRDV 281
           +   +LH      G+ DDA  +   M K +V
Sbjct: 621 APYVLLHNMYADVGRWDDAAEMRTMMEKNNV 651


>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 541

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 148/376 (39%), Positives = 242/376 (64%), Gaps = 7/376 (1%)

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           D+   NS++   +  G   +A+ +FD+M  RDVVSW +M+ GY + G V++A  LF +M 
Sbjct: 163 DVFVGNSLISLFMNFGLSKNARKVFDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRKMN 222

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQC---ELYLHPDDASLVIVLSAIAQLGHID 365
            R+++  N+++ G V+ G++ ++LEIF  MQ    +  + PD  ++  VLSA A LG ID
Sbjct: 223 GRNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKITIASVLSACALLGSID 282

Query: 366 KGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
            G  +H YL K+    +   G AL++MY KCG ++ AI++F  + +     W AMI+  A
Sbjct: 283 HGKWVHAYLRKNDIECDVVIGTALVNMYGKCGDVQQAIEIFNDMPEKDASAWTAMISVFA 342

Query: 426 IHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL 485
           +HG G+ AFD  +EME+  ++P+ +TF GLL+AC+H+GLV++G  CF++M+R++ +EP++
Sbjct: 343 LHGFGKKAFDCFLEMEKAGVKPNHVTFVGLLSACSHSGLVEQGRCCFDVMKRVYSIEPQI 402

Query: 486 QHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIG 545
            HY CMVDIL RA   + A  LI  MPM+P+  +W  LL  C+ + N+ +GE VA +LI 
Sbjct: 403 YHYACMVDILSRARLFDEALFLIRSMPMKPDVYVWGALLGGCQMHGNIKLGEKVAHYLID 462

Query: 546 MDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK-KLPGCSWIELEGVVHEFFVRD 604
           ++  N + Y+ L +++   G ++ A+R+R+ MKER ++ K+PGCS IE+ GVV EF V  
Sbjct: 463 LEPHNHAFYINLCDIYVKAGKYDAAKRIRNSMKERGIETKIPGCSIIEINGVVQEFSV-- 520

Query: 605 KSRLQVRDIYYMLDNM 620
              + ++++  +LD +
Sbjct: 521 -GEIPMKELPLVLDRL 535



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 133/471 (28%), Positives = 236/471 (50%), Gaps = 52/471 (11%)

Query: 7   YNQPCNSTQSTLL--LLRKCKTLNDVNQIHARMITTGFIKNT---HLTTKLVASFSSSPC 61
           + +P N T    L  L+ +CK L ++  IH  ++ +  +      +L T+L+        
Sbjct: 10  FGEPKNLTLKNTLSTLIEQCKNLKEIKIIHTHILKSPILHTRDQYYLFTRLLY------- 62

Query: 62  TPLTEFARYIFFKY--HAFREKKDPFL--WNAIIKTYS--HGLDPK----EALVMFCLML 111
                F+ Y  F Y  + F   K P L  +N +I++Y    G D      +AL+++  ML
Sbjct: 63  --FCSFSNYASFNYANNVFHMIKYPELRVYNIMIRSYGCIEGGDDSNCCYKALMLYKQML 120

Query: 112 DNGVSVDKFSASLVLKACSRL---GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCG 168
           + G+  +  +   ++K CSRL   G + E +  H L  K  F +D+F+ N LISL++  G
Sbjct: 121 NKGIVPNNLTFPFLVKGCSRLQYGGTVGEVIHAHVL--KFGFLNDVFVGNSLISLFMNFG 178

Query: 169 YLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGY 228
             + AR++FD+M +RD VS+NSM+ GY+++G +E A  LF  M    RN+I+WNS++ G 
Sbjct: 179 LSKNARKVFDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRKM--NGRNIITWNSIITGL 236

Query: 229 AQLKSGLQFAWQIFEKMP--------ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR- 279
            Q     + + +IF +M         + D I+  S+L  C   G +D  + +   + K  
Sbjct: 237 VQAGHAKE-SLEIFHEMQFLSGDDVVKPDKITIASVLSACALLGSIDHGKWVHAYLRKND 295

Query: 280 ---DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFD 336
              DVV    +++ Y K G V  A  +F++MP++D  A  AM+  +  +G+  KA + F 
Sbjct: 296 IECDVVIGTALVNMYGKCGDVQQAIEIFNDMPEKDASAWTAMISVFALHGFGKKAFDCFL 355

Query: 337 NMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK--HGVALIDMYS 394
            M+ +  + P+  + V +LSA +  G +++G      + K  +S+  +  H   ++D+ S
Sbjct: 356 EME-KAGVKPNHVTFVGLLSACSHSGLVEQGRCCFDVM-KRVYSIEPQIYHYACMVDILS 413

Query: 395 KCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHG---LGELAFDLLMEME 441
           +    + A+ +   +     V  W A++ G  +HG   LGE     L+++E
Sbjct: 414 RARLFDEALFLIRSMPMKPDVYVWGALLGGCQMHGNIKLGEKVAHYLIDLE 464



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 37/195 (18%)

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G  IH ++ K  F  +   G +LI ++   G  +NA KVF+++    V  WN+M+ G   
Sbjct: 148 GEVIHAHVLKFGFLNDVFVGNSLISLFMNFGLSKNARKVFDEMFVRDVVSWNSMVVGYLR 207

Query: 427 HGLGELAFDLLM-------------------------------EMERLS----IEPDDIT 451
           +G  E+A +L                                 EM+ LS    ++PD IT
Sbjct: 208 NGEVEMALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKIT 267

Query: 452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM 511
              +L+ACA  G +  G      +R+ + +E ++     +V++ G+ G ++ A  +  DM
Sbjct: 268 IASVLSACALLGSIDHGKWVHAYLRK-NDIECDVVIGTALVNMYGKCGDVQQAIEIFNDM 326

Query: 512 PMEPNDVIWRTLLSA 526
           P E +   W  ++S 
Sbjct: 327 P-EKDASAWTAMISV 340


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 209/683 (30%), Positives = 332/683 (48%), Gaps = 84/683 (12%)

Query: 15  QSTLLLLRKC---KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYI 71
           ++ + LLR C   +  ++ +++H+ +  T       L   L++ F       L E A Y+
Sbjct: 95  ETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRF--GDLVE-AWYV 151

Query: 72  FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
           F K      ++D F WN ++  Y+      EAL ++  ML  G+  D ++   VL+ C  
Sbjct: 152 FGKM----AERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGG 207

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
           L  +  G ++H  + +  F SD+ + N LI++YV+CG +  AR +FD+M  RD +S+N+M
Sbjct: 208 LPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAM 267

Query: 192 IDGYVKSGNIESARELFDSMP--IRERNLISWNSVLNGYAQL---KSGLQFAWQIFEKMP 246
           I GY ++        LF  M     + +L++  SV++    L   + G +    + +   
Sbjct: 268 ISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGF 327

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
             ++   NS++      G  D+A+ +F KM  +D+VSW  MI GY K G  + A   +  
Sbjct: 328 VAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTI 387

Query: 307 MPKRDVV-----------AC----------------------------NAMMGGYVRNGY 327
           M    VV           AC                            N+++  Y +   
Sbjct: 388 MEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRC 447

Query: 328 SMKALEIFDNM-----------------------------QCELYLHPDDASLVIVLSAI 358
             KALE+F  +                             Q  L L P+  +LV VLSA 
Sbjct: 448 IDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLSAC 507

Query: 359 AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWN 418
           A++G +  G  IH +  +     +G    AL+DMY +CG +E A   F   E   V  WN
Sbjct: 508 ARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCEK-DVASWN 566

Query: 419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRI 478
            ++ G A  G G LA +L  +M    + PD+ITFT LL AC+ +G+V +GL  FE M   
Sbjct: 567 ILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHK 626

Query: 479 HKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEP 538
             + P L+HY  +VD+LGRAG +E A   I+ MP++P+  IW  LL+ACR Y+N+ +GE 
Sbjct: 627 FHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGEL 686

Query: 539 VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVH 598
            A+H+  MD+ +   Y+LL N++A  G W++  RVR +M+E  L   PGCSW+E+ G VH
Sbjct: 687 AAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVH 746

Query: 599 EFFVRDKSRLQVRDIYYMLDNMW 621
            F   D    Q+++I  +L+  +
Sbjct: 747 AFLTGDDFHPQIKEINAVLEGFY 769



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 124/442 (28%), Positives = 205/442 (46%), Gaps = 42/442 (9%)

Query: 99  DPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQN 158
           D ++AL+    M +  VSV++ +   +L+ C       EG ++H  + K      + L N
Sbjct: 74  DLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGN 133

Query: 159 CLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM---PIRE 215
            L+S++VR G L  A  +F KM  RD  S+N ++ GY K+G  + A  L+  M    IR 
Sbjct: 134 ALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRP 193

Query: 216 RNLISWNSVL---NGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272
            ++ ++  VL    G   L  G +    +     E D+   N+++   VKCG +  A+ +
Sbjct: 194 -DVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLV 252

Query: 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332
           FD+MP+RD +SW                               NAM+ GY  N   ++ L
Sbjct: 253 FDRMPRRDRISW-------------------------------NAMISGYFENDVCLEGL 281

Query: 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDM 392
            +F  M+ E ++ PD  ++  V+SA   LG    G  +H Y+ K  F        +LI M
Sbjct: 282 RLFFMMR-EFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQM 340

Query: 393 YSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITF 452
           +S  G  + A  VF ++E   +  W AMI+G   +GL E A +    ME   + PD+IT 
Sbjct: 341 HSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITI 400

Query: 453 TGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP 512
             +L+ACA  GL+ +G++  E   R   L   +     ++D+  +   I+ A  +   +P
Sbjct: 401 ASVLSACAGLGLLDKGIMLHEFADRT-GLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP 459

Query: 513 MEPNDVIWRTLLSACR-NYENL 533
              N + W +++   R NY + 
Sbjct: 460 -NKNVISWTSIILGLRLNYRSF 480


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 172/548 (31%), Positives = 291/548 (53%), Gaps = 39/548 (7%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +++   W  +I  ++     ++A+ +F  M  +G   D+F+ S VL AC+ LGL+  G Q
Sbjct: 18  ERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQ 77

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  + ++    D+ +   L+ +Y +C                               G+
Sbjct: 78  LHSRVIRLGLALDVCVGCSLVDMYAKCA----------------------------ADGS 109

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----ISWNSM 256
           ++ +R++F+ MP  E N++SW +++  YAQ     + A ++F KM    +     S++S+
Sbjct: 110 VDDSRKVFEQMP--EHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSV 167

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVS----WANMIDGYAKLGRVDIARRLFDEMPKRDV 312
           L  C         + ++    K  + S      ++I  YA+ GR++ AR+ FD + ++++
Sbjct: 168 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNL 227

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           V+ NA++ GY +N  S +A  +F+ +  +  +     +   +LS  A +G + KG  IH 
Sbjct: 228 VSYNAIVDGYAKNLKSEEAFLLFNEI-ADTGIGISAFTFASLLSGAASIGAMGKGEQIHG 286

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
            L K  +  N     ALI MYS+CG+IE A +VF ++ED +V  W +MI G A HG    
Sbjct: 287 RLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATR 346

Query: 433 AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV 492
           A ++  +M     +P++IT+  +L+AC+H G++ EG   F  M + H + P ++HY CMV
Sbjct: 347 ALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMV 406

Query: 493 DILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552
           D+LGR+G +  A   I  MP+  + ++WRTLL ACR + N  +G   A+ ++  +  + +
Sbjct: 407 DLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPA 466

Query: 553 SYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRD 612
           +Y+LLSN+ A  G W D  ++R  MKERNL K  GCSWIE+E  VH F V + S  Q   
Sbjct: 467 AYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQ 526

Query: 613 IYYMLDNM 620
           IY  LD +
Sbjct: 527 IYQELDQL 534



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 121/457 (26%), Positives = 213/457 (46%), Gaps = 71/457 (15%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           Q+H+R+I  G   +  +   LV  ++        + +R +F +      + +   W AII
Sbjct: 77  QLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQM----PEHNVMSWTAII 132

Query: 92  KTYSH-GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAF 150
             Y+  G   KEA+ +FC M+   +  + FS S VLKAC  L     G Q++    K+  
Sbjct: 133 TAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGI 192

Query: 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDS 210
            S   + N LIS+Y R G +E AR+ FD +  ++ VSYN+++DGY K+   E A  LF+ 
Sbjct: 193 ASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNE 252

Query: 211 MPIRERNL--ISWNSVLNGYAQLKS---GLQFAWQIFEKMPERDLISWNSMLHGCVKCGK 265
           +      +   ++ S+L+G A + +   G Q   ++ +   + +    N+++    +CG 
Sbjct: 253 IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGN 312

Query: 266 MDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRN 325
           ++ A  +F++M  R+V+SW +MI G+AK                               +
Sbjct: 313 IEAAFQVFNEMEDRNVISWTSMITGFAK-------------------------------H 341

Query: 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
           G++ +ALE+F  M  E    P++ + V VLSA + +G I +G       +K   S+  +H
Sbjct: 342 GFATRALEMFHKM-LETGTKPNEITYVAVLSACSHVGMISEG-------QKHFNSMYKEH 393

Query: 386 GVA--------LIDMYSKCGSIENAIKVFEQ---IEDGSVDHWNAMINGLAIHG---LGE 431
           G+         ++D+  + G +  A++       + D  V  W  ++    +HG   LG 
Sbjct: 394 GIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALV--WRTLLGACRVHGNTELGR 451

Query: 432 LAFDLLMEMERLSIEPDD-ITFTGLLNACAHAGLVKE 467
            A ++++E      EPDD   +  L N  A AG  K+
Sbjct: 452 HAAEMILEQ-----EPDDPAAYILLSNLHASAGQWKD 483



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 160/367 (43%), Gaps = 50/367 (13%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+ C  L+D     Q+++  +  G      +   L++ ++ S        A  I F+  
Sbjct: 167 VLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFE-- 224

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
                K+   +NAI+  Y+  L  +EA ++F  + D G+ +  F+ + +L   + +G + 
Sbjct: 225 -----KNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMG 279

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           +G QIHG L K  + S+  + N LIS+Y RCG +E A Q+F++M  R+ +S+ SMI G+ 
Sbjct: 280 KGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFA 339

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
           K G    A E+F  M                               E   + + I++ ++
Sbjct: 340 KHGFATRALEMFHKM------------------------------LETGTKPNEITYVAV 369

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVV-----SWANMIDGYAKLGRVDIARRLFDEMP-KR 310
           L  C   G + + Q  F+ M K   +      +A M+D   + G +  A    + MP   
Sbjct: 370 LSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMA 429

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI-AQLGHIDKGVA 369
           D +    ++G    +G +       + +   L   PDD +  I+LS + A  G     V 
Sbjct: 430 DALVWRTLLGACRVHGNTELGRHAAEMI---LEQEPDDPAAYILLSNLHASAGQWKDVVK 486

Query: 370 IHRYLEK 376
           I + +++
Sbjct: 487 IRKSMKE 493



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 175/416 (42%), Gaps = 97/416 (23%)

Query: 269 AQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYS 328
           A  +FDKMP+R++V+W  MI  +A+LG    A  LF +M           + GYV     
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDME----------LSGYV----- 53

Query: 329 MKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVA 388
                            PD  +   VLSA  +LG +  G  +H  + +   +L+   G +
Sbjct: 54  -----------------PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCS 96

Query: 389 LIDMYSKC---GSIENAIKVFEQIEDGSVDHWNAMINGLAIHG-LGELAFDLLMEMERLS 444
           L+DMY+KC   GS++++ KVFEQ+ + +V  W A+I   A  G   + A +L  +M    
Sbjct: 97  LVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGH 156

Query: 445 IEPDDITFTGLLNAC-----------------------------------AHAGLVKEGL 469
           I P+  +F+ +L AC                                   A +G +++  
Sbjct: 157 IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDAR 216

Query: 470 LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR-----NLIEDMPMEPNDVIWRTLL 524
             F+++      E  L  Y  +VD  G A ++++       N I D  +  +   + +LL
Sbjct: 217 KAFDIL-----FEKNLVSYNAIVD--GYAKNLKSEEAFLLFNEIADTGIGISAFTFASLL 269

Query: 525 SACRNYENLNVGEPVAKHLI-GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583
           S   +   +  GE +   L+ G   SN      L +M++  G    A +V + M++RN+ 
Sbjct: 270 SGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNV- 328

Query: 584 KLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPD-----SVATSCTHYG 634
                SW  +   +  F     +   +   + ML+    P+     +V ++C+H G
Sbjct: 329 ----ISWTSM---ITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVG 377


>gi|449451309|ref|XP_004143404.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
 gi|449526377|ref|XP_004170190.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 577

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 180/526 (34%), Positives = 278/526 (52%), Gaps = 51/526 (9%)

Query: 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK 197
           G+ +H  L K A   DLFL N LI +Y +C  +E A++ FD + IR+  S+N+++  Y +
Sbjct: 30  GMSLHSHLIKTALSFDLFLANRLIDMYSKCNSMENAQKAFDDLPIRNIHSWNTILASYSR 89

Query: 198 SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF-AWQIFEKMP---------- 246
           +G    AR++FD MP    N++S+N++++ +     GL   +  IF +M           
Sbjct: 90  AGFFSQARKVFDEMP--HPNIVSYNTLISSFTH--HGLYVESMNIFRQMQQDFDLLALDE 145

Query: 247 -------------------------------ERDLISWNSMLHGCVKCGKMDDAQALFDK 275
                                          E ++I  N+++    KCG  D + ++F +
Sbjct: 146 ITLVSIAGTCACLGALEFLRQVHGAAIVIGLEFNMIVCNAIVDAYGKCGDPDASYSIFSR 205

Query: 276 MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIF 335
           M +RDVV+W +M+  Y +  R+D A R+F  MP ++V    A++   V+N YS +AL++F
Sbjct: 206 MKERDVVTWTSMVVAYNQTSRLDDAFRVFSCMPVKNVHTWTALINALVKNKYSNEALDLF 265

Query: 336 DNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV---ALIDM 392
             M  E    P+  + V VLSA A L  I KG  IH  + +    LN  +     ALID+
Sbjct: 266 QQM-LEEKTSPNAFTFVGVLSACADLALIAKGKEIHGLIIRRSSELNFPNVYVCNALIDL 324

Query: 393 YSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITF 452
           YSK G +++A  +F  I +  V  WN++I G A +GLG  A     +M  + I P+ +TF
Sbjct: 325 YSKSGDVKSARMLFNLILEKDVVSWNSLITGFAQNGLGREALLAFRKMTEVGIRPNKVTF 384

Query: 453 TGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP 512
             +L+AC+H GL  EGL   ELM + + +EP L+HY  M+D+ GR   +  A +LI   P
Sbjct: 385 LAVLSACSHTGLSSEGLCILELMEKFYDIEPSLEHYAVMIDMFGRENRLAEALDLISRAP 444

Query: 513 MEPNDV-IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDAR 571
                V IW  +L ACR +ENL++    A+ L  M+  N+  YV+LSN+FA    W DA 
Sbjct: 445 NGSKHVGIWGAVLGACRIHENLDLAIRAAETLFEMEPDNAGRYVMLSNVFAAASRWMDAH 504

Query: 572 RVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML 617
            VR +M+ER  KK    S IE+  + H+F  RD S  Q+ +IY ++
Sbjct: 505 NVRKLMEERGFKKEVAYSCIEIRNIRHKFVARDNSHSQMGEIYELM 550



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 158/338 (46%), Gaps = 45/338 (13%)

Query: 228 YAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANM 287
           +  L+ G+     + +     DL   N ++    KC  M++AQ  FD +P R++ SW  +
Sbjct: 24  HKHLRVGMSLHSHLIKTALSFDLFLANRLIDMYSKCNSMENAQKAFDDLPIRNIHSWNTI 83

Query: 288 IDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL-YLHP 346
           +  Y++ G    AR++FDEMP  ++V+ N ++  +  +G  ++++ IF  MQ +   L  
Sbjct: 84  LASYSRAGFFSQARKVFDEMPHPNIVSYNTLISSFTHHGLYVESMNIFRQMQQDFDLLAL 143

Query: 347 DDASLVIVLSAIAQLGHID-----KGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS--- 398
           D+ +LV +    A LG ++      G AI   LE +    N     A++D Y KCG    
Sbjct: 144 DEITLVSIAGTCACLGALEFLRQVHGAAIVIGLEFNMIVCN-----AIVDAYGKCGDPDA 198

Query: 399 ----------------------------IENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
                                       +++A +VF  +   +V  W A+IN L  +   
Sbjct: 199 SYSIFSRMKERDVVTWTSMVVAYNQTSRLDDAFRVFSCMPVKNVHTWTALINALVKNKYS 258

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL-MRRIHKLE-PELQHY 488
             A DL  +M      P+  TF G+L+ACA   L+ +G     L +RR  +L  P +   
Sbjct: 259 NEALDLFQQMLEEKTSPNAFTFVGVLSACADLALIAKGKEIHGLIIRRSSELNFPNVYVC 318

Query: 489 GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
             ++D+  ++G +++AR L  ++ +E + V W +L++ 
Sbjct: 319 NALIDLYSKSGDVKSARMLF-NLILEKDVVSWNSLITG 355



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 198/410 (48%), Gaps = 30/410 (7%)

Query: 62  TPLTEFARYIFFKY--HAFREKKDPFL--WNAIIKTYSHGLDPKEALVMFCLMLDNG--V 115
           T L  ++R  FF      F E   P +  +N +I +++H     E++ +F  M  +   +
Sbjct: 82  TILASYSRAGFFSQARKVFDEMPHPNIVSYNTLISSFTHHGLYVESMNIFRQMQQDFDLL 141

Query: 116 SVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQ 175
           ++D+ +   +   C+ LG +E   Q+HG    +    ++ + N ++  Y +CG  + +  
Sbjct: 142 ALDEITLVSIAGTCACLGALEFLRQVHGAAIVIGLEFNMIVCNAIVDAYGKCGDPDASYS 201

Query: 176 LFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK--- 232
           +F +M  RD V++ SM+  Y ++  ++ A  +F  MP+  +N+ +W +++N   + K   
Sbjct: 202 IFSRMKERDVVTWTSMVVAYNQTSRLDDAFRVFSCMPV--KNVHTWTALINALVKNKYSN 259

Query: 233 SGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR-------DVVSWA 285
             L    Q+ E+    +  ++  +L  C     +   + +   + +R       +V    
Sbjct: 260 EALDLFQQMLEEKTSPNAFTFVGVLSACADLALIAKGKEIHGLIIRRSSELNFPNVYVCN 319

Query: 286 NMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLH 345
            +ID Y+K G V  AR LF+ + ++DVV+ N+++ G+ +NG   +AL  F  M  E+ + 
Sbjct: 320 ALIDLYSKSGDVKSARMLFNLILEKDVVSWNSLITGFAQNGLGREALLAFRKMT-EVGIR 378

Query: 346 PDDASLVIVLSAIAQLGHIDKGVAIHRYLEK-DQFSLNGKHGVALIDMYSKCGSIENAIK 404
           P+  + + VLSA +  G   +G+ I   +EK      + +H   +IDM+ +   +  A+ 
Sbjct: 379 PNKVTFLAVLSACSHTGLSSEGLCILELMEKFYDIEPSLEHYAVMIDMFGRENRLAEALD 438

Query: 405 VFEQIEDGS--VDHWNAMINGLAIHGLGELAF---DLLMEMERLSIEPDD 449
           +  +  +GS  V  W A++    IH   +LA    + L EM     EPD+
Sbjct: 439 LISRAPNGSKHVGIWGAVLGACRIHENLDLAIRAAETLFEM-----EPDN 483



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 118/277 (42%), Gaps = 21/277 (7%)

Query: 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
           + S   Q  H+  G+++H +L K   S +      LIDMYSKC S+ENA K F+ +   +
Sbjct: 17  LFSKCIQHKHLRVGMSLHSHLIKTALSFDLFLANRLIDMYSKCNSMENAQKAFDDLPIRN 76

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE 473
           +  WN ++   +  G    A  +  EM      P+ +++  L+++  H GL  E +  F 
Sbjct: 77  IHSWNTILASYSRAGFFSQARKVFDEMP----HPNIVSYNTLISSFTHHGLYVESMNIFR 132

Query: 474 LMRRIHKL----EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRN 529
            M++   L    E  L         LG    +         + +E N ++   ++ A   
Sbjct: 133 QMQQDFDLLALDEITLVSIAGTCACLGALEFLRQVHGAAIVIGLEFNMIVCNAIVDAYGK 192

Query: 530 YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCS 589
             + +    +   +   D    +S V+  N  + L   +DA RV S M  +N+      +
Sbjct: 193 CGDPDASYSIFSRMKERDVVTWTSMVVAYNQTSRL---DDAFRVFSCMPVKNVH-----T 244

Query: 590 WIELEGVVHEFFVRDKSRLQVRDIY-YMLDNMWTPDS 625
           W  L   +    V++K   +  D++  ML+   +P++
Sbjct: 245 WTALINAL----VKNKYSNEALDLFQQMLEEKTSPNA 277


>gi|357150199|ref|XP_003575376.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Brachypodium distachyon]
          Length = 523

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 186/511 (36%), Positives = 283/511 (55%), Gaps = 23/511 (4%)

Query: 125 VLKACSRLGLIEEGLQIHG---LLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181
           VL  C+ L  ++   Q+HG   +  + A  S  F      SL + C  L +AR+LFD   
Sbjct: 15  VLSRCATLAHLK---QLHGRSVVTARAASQSTTFQLLRFASLRLSC--LPYARRLFDSTP 69

Query: 182 IRDSVSYNSMIDGYVKSGNI----ESARELFDSMPIRER---NLISWNSVLNGYAQLKSG 234
             +   Y++M+  Y  +         A  LF  M  R R   N   +  VL   A    G
Sbjct: 70  HPNVFLYSAMLSAYAAASPAQAYGHDALALFLRMLRRGRPAPNQFVYPLVLR--AACAIG 127

Query: 235 LQFAWQIFEKMPERDLISWN----SMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDG 290
           +Q    I     +    +++    S+L G  + G M DA+ LFD + +R+V+SW  ++ G
Sbjct: 128 VQLVRSIHSHACKSGFHAYDVIRTSLLDGYSRYGMMLDARKLFDGLTERNVISWTALVSG 187

Query: 291 YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
           YA+ G++  A  LFD MP+RDV A NAM+ G  +NG  ++A+ I   M  E +   +  +
Sbjct: 188 YARAGKIGDAIVLFDRMPERDVAAWNAMITGCTQNGLFVEAVGICSRMVDEGF-QLNGTT 246

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE 410
           +  VLSA   LG +  G  +H Y  +            LIDMY KCG+++ A  +F++  
Sbjct: 247 VSCVLSACGHLGMLKIGKVVHGYAWRSCVGFGSSVVNGLIDMYGKCGNLKEARWMFDEFS 306

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470
           D S+  WN++IN LA+HG  + A  +  EM    IEPD +TF GLLNAC H G V EGL 
Sbjct: 307 DRSLTTWNSLINCLALHGHSKSAIAVFDEMRDEGIEPDVVTFVGLLNACTHGGFVDEGLT 366

Query: 471 CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNY 530
            F+LM    ++EPE++HYGC+VD+LGRAG  E A N+I DM ++P++VIW +LL+ACR +
Sbjct: 367 YFKLMCDELRIEPEIEHYGCIVDLLGRAGRFEDAMNVINDMKVQPDEVIWGSLLNACRTH 426

Query: 531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL-KKLPGCS 589
             L + E   + L+ ++ +N++  V+L+N+++  G W +  ++R +MKE  + KKLPGCS
Sbjct: 427 RQLELAEFSVRKLLQLNPNNANYVVMLANLYSEGGSWEEVTKIRKLMKEDIMGKKLPGCS 486

Query: 590 WIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           WIE++   H F+  D +  +  DIY  LD +
Sbjct: 487 WIEVDRKTHRFYSGDDAHPESEDIYDTLDEL 517



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 129/508 (25%), Positives = 238/508 (46%), Gaps = 52/508 (10%)

Query: 10  PCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLV--ASFSSSPCTPLTEF 67
           P  S    + +L +C TL  + Q+H R + T    +   T +L+  AS   S C P   +
Sbjct: 5   PPFSHGDFVAVLSRCATLAHLKQLHGRSVVTARAASQSTTFQLLRFASLRLS-CLP---Y 60

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDP----KEALVMFCLMLDNG-VSVDKFSA 122
           AR +F          + FL++A++  Y+          +AL +F  ML  G  + ++F  
Sbjct: 61  ARRLFDS----TPHPNVFLYSAMLSAYAAASPAQAYGHDALALFLRMLRRGRPAPNQFVY 116

Query: 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI 182
            LVL+A   +G ++    IH    K  F +   ++  L+  Y R G +  AR+LFD +  
Sbjct: 117 PLVLRAACAIG-VQLVRSIHSHACKSGFHAYDVIRTSLLDGYSRYGMMLDARKLFDGLTE 175

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ---LKSGLQFAW 239
           R+ +S+ +++ GY ++G I  A  LFD MP  ER++ +WN+++ G  Q       +    
Sbjct: 176 RNVISWTALVSGYARAGKIGDAIVLFDRMP--ERDVAAWNAMITGCTQNGLFVEAVGICS 233

Query: 240 QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN-----MIDGYAKL 294
           ++ ++  + +  + + +L  C   G +   + +      R  V + +     +ID Y K 
Sbjct: 234 RMVDEGFQLNGTTVSCVLSACGHLGMLKIGKVV-HGYAWRSCVGFGSSVVNGLIDMYGKC 292

Query: 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
           G +  AR +FDE   R +   N+++     +G+S  A+ +FD M+ E  + PD  + V +
Sbjct: 293 GNLKEARWMFDEFSDRSLTTWNSLINCLALHGHSKSAIAVFDEMRDE-GIEPDVVTFVGL 351

Query: 355 LSAIAQLGHIDKGVAIHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
           L+A    G +D+G+   + + ++ +     +H   ++D+  + G  E+A+ V   I D  
Sbjct: 352 LNACTHGGFVDEGLTYFKLMCDELRIEPEIEHYGCIVDLLGRAGRFEDAMNV---INDMK 408

Query: 414 VDH----WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469
           V      W +++N    H   ELA   + ++  L + P++  +  +L     A L  EG 
Sbjct: 409 VQPDEVIWGSLLNACRTHRQLELAEFSVRKL--LQLNPNNANYVVML-----ANLYSEG- 460

Query: 470 LCFELMRRIHKLEPELQHYGCMVDILGR 497
             +E + +I KL  E        DI+G+
Sbjct: 461 GSWEEVTKIRKLMKE--------DIMGK 480


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 183/629 (29%), Positives = 320/629 (50%), Gaps = 82/629 (13%)

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127
           AR +F    A   K +  +WN I+  Y+   + +E+L++F  M + G++ D+ + S +LK
Sbjct: 362 ARRVF---DAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLK 418

Query: 128 ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS 187
             + L    +GL  HG L K+ FG+   + N LIS Y +   ++ A  +FD+M  +D++S
Sbjct: 419 CITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTIS 478

Query: 188 YNSMIDGYVKSGNIESARELFDSMPIRERNLIS---------------W--NSVLNGYAQ 230
           +NS+I G   +G    A ELF  M ++   L S               W    V++GY+ 
Sbjct: 479 WNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYS- 537

Query: 231 LKSGL--------------------QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQ 270
           +K+GL                        QIF  M +++++SW +M+    + G  D   
Sbjct: 538 VKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVA 597

Query: 271 ALFDKMP----KRDVVSWANMIDGYA-----KLGR------------------------- 296
            L  +M     K DV +  +++ G+A     K G+                         
Sbjct: 598 GLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMY 657

Query: 297 -----VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASL 351
                ++ AR +FD +  +D+++ N ++GGY RN ++ ++  +F +M   L   P+  ++
Sbjct: 658 VNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDML--LQFKPNTVTM 715

Query: 352 VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED 411
             +L A+A +  +++G  IH Y  +  F  +     AL+DMY KCG++  A  +F+++  
Sbjct: 716 TCILPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTK 775

Query: 412 GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC 471
            ++  W  MI G  +HG G+ A  L  +M    +EPD  +F+ +L AC H+GL  EG   
Sbjct: 776 KNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKF 835

Query: 472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYE 531
           F  MR+ +K+EP+L+HY C+VD+L   G+++ A   IE MP+EP+  IW +LL  CR + 
Sbjct: 836 FNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHR 895

Query: 532 NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591
           ++ + E VA  +  ++  N+  YVLL+N++A    W   +++++ +  R L++  GCSWI
Sbjct: 896 DVKLAEKVADRVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGCSWI 955

Query: 592 ELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           E+ G VH F   +++  +   I   LD++
Sbjct: 956 EVRGKVHVFIADNRNHPEWNRIAEFLDHV 984



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 125/398 (31%), Positives = 184/398 (46%), Gaps = 53/398 (13%)

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           D  +W +++  Y+   D +E + +F  M   GVS D  + S VLK  + LG I EG  IH
Sbjct: 162 DVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIH 221

Query: 143 GLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIE 202
           GLL K+  G    + N LI+LY RCG +E A Q+FD M  RD++S+NS I GY  +G  +
Sbjct: 222 GLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHD 281

Query: 203 SARELFDSM-----PIRERNLIS------------WNSVLNGYAQLKSGLQFAWQIFEKM 245
            A +LF  M      I    ++S               V++GY+ +KSGL   W +    
Sbjct: 282 RAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYS-MKSGL--LWDLESVQ 338

Query: 246 PERDLISWNSMLHGCVKCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRLF 304
              D    + ++   VKCG M  A+ +FD MP K +V  W  ++ GYAK    + +  LF
Sbjct: 339 SGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLF 398

Query: 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364
           ++M                                 EL + PD+ +L  +L  I  L   
Sbjct: 399 EQMH--------------------------------ELGITPDEHALSCLLKCITCLSCA 426

Query: 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGL 424
             G+  H YL K  F        ALI  Y+K   I+NA+ VF+++       WN++I+G 
Sbjct: 427 RDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGC 486

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462
             +GL   A +L + M     E D  T   +L ACA +
Sbjct: 487 TSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARS 524



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 136/587 (23%), Positives = 238/587 (40%), Gaps = 98/587 (16%)

Query: 26  TLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPF 85
           ++ +   IH  +   G  +   +   L+A +S   C    E A  +F   HA    +D  
Sbjct: 213 SITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCM---EDAMQVFDSMHA----RDAI 265

Query: 86  LWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGL- 144
            WN+ I  Y        A+ +F  M   G  +   +   VL AC+ LG    G  +HG  
Sbjct: 266 SWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYS 325

Query: 145 --------LRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS-YNSMIDGY 195
                   L  V  G D  L + L+ +YV+CG +  AR++FD M  + +V  +N ++ GY
Sbjct: 326 MKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGY 385

Query: 196 VKSGNIESARELFDSM----------------------PIRERNLIS------------- 220
            K+   E +  LF+ M                            L++             
Sbjct: 386 AKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQC 445

Query: 221 --WNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM-- 276
              N++++ YA+  + +  A  +F++MP +D ISWNS++ GC   G   +A  LF +M  
Sbjct: 446 AVCNALISFYAK-SNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWM 504

Query: 277 --PKRDVVS-------------W--ANMIDGYAK----LGRVDIARRLFD---------- 305
              + D  +             W    ++ GY+     +G   +A  L D          
Sbjct: 505 QGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHS 564

Query: 306 ------EMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
                  M +++VV+  AM+  Y R G   K   +   M  +  + PD  ++  VL   A
Sbjct: 565 TNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLD-GIKPDVFAVTSVLHGFA 623

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
               + +G ++H Y  ++          AL++MY  C ++E A  VF+ + +  +  WN 
Sbjct: 624 GDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNT 683

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
           +I G + +     +F L  +M  L  +P+ +T T +L A A    ++ G        R  
Sbjct: 684 LIGGYSRNNFANESFSLFSDM-LLQFKPNTVTMTCILPAVASISSLERGREIHAYALRRG 742

Query: 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
            LE        +VD+  + G +  AR L + +  + N + W  +++ 
Sbjct: 743 FLEDSYTS-NALVDMYVKCGALLVARVLFDRL-TKKNLISWTIMIAG 787



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 176/374 (47%), Gaps = 40/374 (10%)

Query: 181 GIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQ 240
           GI  SV    ++  Y+K G++  AR +FD MP R  ++  W S+++ YA+     Q    
Sbjct: 126 GIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAK-AGDFQEGVS 184

Query: 241 IFEKM------PERDLISWNSMLHGCVKCGKMDDAQ---ALFDKMPKRDVVSWAN-MIDG 290
           +F +M      P+   +S   +L      G + + +    L +K+   +  + AN +I  
Sbjct: 185 LFRQMQCCGVSPDAHAVS--CVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIAL 242

Query: 291 YAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350
           Y++ G ++ A ++FD M  RD ++ N+ + GY  NG+  +A+++F  M  E        +
Sbjct: 243 YSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSE-GTEISSVT 301

Query: 351 LVIVLSAIAQLGHIDKGVAIHRY---------LEKDQFSLNGKHGVALIDMYSKCGSIEN 401
           ++ VL A A+LG    G  +H Y         LE  Q  ++   G  L+ MY KCG + +
Sbjct: 302 VLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGS 361

Query: 402 AIKVFEQI-EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN--- 457
           A +VF+ +   G+V  WN ++ G A     E +  L  +M  L I PD+   + LL    
Sbjct: 362 ARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCIT 421

Query: 458 --ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC--MVDILGRAGHIEAARNLIEDMPM 513
             +CA  GLV  G L         KL    Q   C  ++    ++  I+ A  + + MP 
Sbjct: 422 CLSCARDGLVAHGYLV--------KLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPH 473

Query: 514 EPNDVIWRTLLSAC 527
           + + + W +++S C
Sbjct: 474 Q-DTISWNSVISGC 486



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 121/483 (25%), Positives = 205/483 (42%), Gaps = 86/483 (17%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           +H   + TG I  T L   L+  +S+  C+      +   F+  A   +K+   W A+I 
Sbjct: 533 VHGYSVKTGLIGETSLANALLDMYSN--CSDWHSTNQ--IFRNMA---QKNVVSWTAMIT 585

Query: 93  TYSH-GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
           +Y+  GL  K A ++  ++LD G+  D F+ + VL   +    +++G  +HG   +    
Sbjct: 586 SYTRAGLFDKVAGLLQEMVLD-GIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGME 644

Query: 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
             L + N L+ +YV C  +E AR +FD +  +D +S+N++I GY ++     +  LF  M
Sbjct: 645 KLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDM 704

Query: 212 PIR-ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER----DLISWNSMLHGCVKCGKM 266
            ++ + N ++   +L   A + S L+   +I      R    D  + N+++   VKCG +
Sbjct: 705 LLQFKPNTVTMTCILPAVASISS-LERGREIHAYALRRGFLEDSYTSNALVDMYVKCGAL 763

Query: 267 DDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNG 326
             A+ LFD++ K++++SW  MI GY   G    A  LF++M    V              
Sbjct: 764 LVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGV-------------- 809

Query: 327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD-QFSLNGKH 385
                              PD AS   +L A    G   +G      + K+ +     KH
Sbjct: 810 ------------------EPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKH 851

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
              ++D+ S  G+++ A   FE IE                                + I
Sbjct: 852 YTCIVDLLSHTGNLKEA---FEFIES-------------------------------MPI 877

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAA 504
           EPD   +  LL+ C     VK   L  ++  R+ KLEPE   +Y  + +I   A   EA 
Sbjct: 878 EPDSSIWVSLLHGCRIHRDVK---LAEKVADRVFKLEPENTGYYVLLANIYAEAERWEAV 934

Query: 505 RNL 507
           + L
Sbjct: 935 KKL 937



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 129/294 (43%), Gaps = 19/294 (6%)

Query: 25  KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDP 84
           ++L     +H   I  G  K   +   L+  + +  C  + E AR +F         KD 
Sbjct: 626 ESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVN--CRNMEE-ARLVFDHV----TNKDI 678

Query: 85  FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGL 144
             WN +I  YS      E+  +F  ML      +  + + +L A + +  +E G +IH  
Sbjct: 679 ISWNTLIGGYSRNNFANESFSLFSDMLLQ-FKPNTVTMTCILPAVASISSLERGREIHAY 737

Query: 145 LRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESA 204
             +  F  D +  N L+ +YV+CG L  AR LFD++  ++ +S+  MI GY   G  + A
Sbjct: 738 ALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDA 797

Query: 205 RELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQF-AWQIFEKMPERDLISWNSMLHGCV 261
             LF+ M     E +  S++++L  YA   SGL    W+ F  M +   I      + C+
Sbjct: 798 VALFEQMRGSGVEPDTASFSAIL--YACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCI 855

Query: 262 -----KCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309
                  G + +A    + MP + D   W +++ G      V +A ++ D + K
Sbjct: 856 VDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFK 909



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 105/244 (43%), Gaps = 44/244 (18%)

Query: 9   QPCNSTQSTLL-LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF 67
           +P   T + +L  +    +L    +IHA  +  GF+++++ +  LV  +    C  L   
Sbjct: 709 KPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVK--CGALL-V 765

Query: 68  ARYIFFKYHAFREKKDPFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVL 126
           AR +F +      KK+   W  +I  Y  HG   K+A+ +F  M  +GV  D  S S +L
Sbjct: 766 ARVLFDRL----TKKNLISWTIMIAGYGMHGCG-KDAVALFEQMRGSGVEPDTASFSAIL 820

Query: 127 KACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSV 186
            AC   GL  EG +    +RK                       E+  +   K       
Sbjct: 821 YACCHSGLTAEGWKFFNAMRK-----------------------EYKIEPKLK------- 850

Query: 187 SYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNG---YAQLKSGLQFAWQIFE 243
            Y  ++D    +GN++ A E  +SMPI   + I W S+L+G   +  +K   + A ++F+
Sbjct: 851 HYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSI-WVSLLHGCRIHRDVKLAEKVADRVFK 909

Query: 244 KMPE 247
             PE
Sbjct: 910 LEPE 913


>gi|297828580|ref|XP_002882172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297328012|gb|EFH58431.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 638

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 190/619 (30%), Positives = 316/619 (51%), Gaps = 80/619 (12%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           K+  + WN ++K+ S     ++ +  F  M  +    D F+  + LKAC  L  ++ G  
Sbjct: 3   KRTLYQWNTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPVALKACGELREVKYGEM 62

Query: 141 IHGLLRK-VAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           IHG L+K V  GSDL++ + LI +YV+CG +  A ++F+++   D V+++SM+ G+ K+G
Sbjct: 63  IHGFLKKNVTLGSDLYVGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSGFEKNG 122

Query: 200 NIESARELF-------DSMPIR-------------------------------ERNLISW 221
           +   A E F       D  P R                                 +L   
Sbjct: 123 SPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSNDLSLV 182

Query: 222 NSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKM----- 276
           NS+LN YA+ ++  + A  +F+ M E+D+ISW++++   V+ G   +A  +F++M     
Sbjct: 183 NSLLNCYAKSRA-FKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMIDDGT 241

Query: 277 -PKRDVV-------SWAN--------------------------MIDGYAKLGRVDIARR 302
            P    V       + AN                          ++D Y K    + A  
Sbjct: 242 EPNVATVLCVLQACAAANDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYA 301

Query: 303 LFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362
           +F  +PK+DVV+  A++ G+  NG + +++E F  M  E    PD   ++ VL + ++LG
Sbjct: 302 VFSRIPKKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMLKVLGSCSELG 361

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMIN 422
            + +    H Y+ K  F  N   G +L+++YS+CGS+ NA KVF +I       W ++I 
Sbjct: 362 FLKQAECFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNEIALKDTVVWTSLIT 421

Query: 423 GLAIHGLGELAFDLLMEMERLS-IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
           G  IHG G  A +    M R S ++P+++TF  +L+AC+HAGL+ EGL  FELM   ++L
Sbjct: 422 GYGIHGKGTKALETFNHMVRSSEVKPNEVTFLSILSACSHAGLIHEGLRIFELMVNDYRL 481

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
            P L+HY  +VD+LGR G ++ A  + + MP  P   I  TLL ACR ++N  + E VAK
Sbjct: 482 APNLEHYAVLVDLLGRVGELDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAK 541

Query: 542 HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
            L  ++S+++  Y+L+SNM+   G W +  ++R+ +K+R +KK    S IE+   VH+F 
Sbjct: 542 QLFELESNHAGYYMLMSNMYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHKFV 601

Query: 602 VRDKSRLQVRDIYYMLDNM 620
             D    +   +Y +L  +
Sbjct: 602 ADDDLHPEKEPVYGLLKEL 620



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 10/225 (4%)

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366
           M KR +   N ++    R+ +  + +  F  M  +    PD+ +L + L A  +L  +  
Sbjct: 1   MTKRTLYQWNTLLKSLSRDKHWEQVMCHFSQMFRDEE-KPDNFTLPVALKACGELREVKY 59

Query: 367 GVAIHRYLEKD-QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLA 425
           G  IH +L+K+     +   G +LI MY KCG +  A+++F ++E   +  W++M++G  
Sbjct: 60  GEMIHGFLKKNVTLGSDLYVGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSGFE 119

Query: 426 IHGLGELAFDLLMEMERLS-IEPDDITFTGLLNACAHAGLVKEGLLCFE--LMRRIHKLE 482
            +G    A +    M   S + PD +T   L++AC      + G  C    +MRR     
Sbjct: 120 KNGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLG-RCVHGFVMRR--GFS 176

Query: 483 PELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSAC 527
            +L     +++   ++   + A NL + M  E + + W T++ AC
Sbjct: 177 NDLSLVNSLLNCYAKSRAFKEAVNLFK-MMAEKDVISWSTVI-AC 219


>gi|357120059|ref|XP_003561748.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Brachypodium distachyon]
          Length = 596

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 185/575 (32%), Positives = 296/575 (51%), Gaps = 28/575 (4%)

Query: 31  NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAI 90
            Q+HAR++    I +  L +KL++ +S    T     AR +F        + + F WNAI
Sbjct: 34  QQLHARLVALSVIPSNFLASKLISLYSR---TARLHDARRVFDAI----PQPNLFAWNAI 86

Query: 91  IKTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL---QIHGLLR 146
           +   S H  +P  AL +F     +GVS D+ + S +LK+ +  G     L   +IH L  
Sbjct: 87  LIALSLHSPEPSAALRLFA---GSGVSPDEVTVSALLKSLAASGTGLSPLVTGEIHALAF 143

Query: 147 KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARE 206
              FG+DLF+ N L++ Y   G +  AR +FD+M  RD VS+NS+I    + G      E
Sbjct: 144 LRGFGTDLFVSNGLVTAYANTGDIRSARAVFDEMPRRDVVSWNSLISACTRVGCYRECLE 203

Query: 207 LFDSMPIRER-------NLISWNSVLNGYAQLKSGLQFAWQIFEKMPER----DLISWNS 255
           LF  + +R R       N ++  SVL+  AQLK+ + F   +     E     D+ +WNS
Sbjct: 204 LFSGL-VRARAIGGVQPNNVTVTSVLHSCAQLKA-VDFGVNVLRVAAESGLDMDIATWNS 261

Query: 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
           ++    KCG++  A+ L ++MPK+D VS++ MI GY   G V+    LF +   + +   
Sbjct: 262 VVGFYAKCGRLQHARELLERMPKKDTVSYSAMITGYMNNGHVEEGMSLFRQADAKGINTW 321

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
           NA++ G ++NG     L +   M     L P+ A+L I++ ++     +      H Y+ 
Sbjct: 322 NALISGLIQNGRQSDVLGLLHEM-IGASLLPNAATLSIIIPSVPLFSTLLGAKQAHGYVI 380

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD 435
           ++ +  +     ALID YSK G ++ A KVFE  E+ S   W ++I  +A HG    A  
Sbjct: 381 RNDYDQSNNVVSALIDAYSKAGFLDMAKKVFEWDENRSTIVWTSIIAAVAAHGDVAAALG 440

Query: 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495
           L  +M R    PD +TFT +L ACAH G V E    F+ M+ +  + P ++ Y C+  +L
Sbjct: 441 LFNQMVRAGTCPDTVTFTVVLTACAHVGKVAEAREVFDSMQTVFGISPVMEQYACIASVL 500

Query: 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555
            RAG +  A  L+  MP EPN  +W  LL+      ++ +G      L  ++  N+ +Y+
Sbjct: 501 SRAGMLTDALELVNKMPFEPNAKVWGALLNGAAAVGDVQLGRFAFDRLFMIEPKNTGNYI 560

Query: 556 LLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSW 590
           +++N+++  G W DA  +RSM+    L+K+PGCSW
Sbjct: 561 VMANLYSNAGKWEDAEIIRSMLWGVGLEKVPGCSW 595


>gi|125561353|gb|EAZ06801.1| hypothetical protein OsI_29045 [Oryza sativa Indica Group]
          Length = 696

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 209/679 (30%), Positives = 328/679 (48%), Gaps = 91/679 (13%)

Query: 34  HARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKT 93
           HA ++ +GF   T     L A   SSP       AR +F +      ++D   WNA++  
Sbjct: 14  HASLLKSGFAAPTPWNQLLTAYSRSSPDG--LAAARRVFDEV----PRRDEVSWNALLAA 67

Query: 94  YSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSD 153
           ++      EA  +   M   G++ + F+    L++ +       G Q+  L  K    ++
Sbjct: 68  HAASGAHPEAWRLLRAMHAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANN 127

Query: 154 LFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPI 213
           +F  + L+ +Y +CG +  ARQ+FD M  R++VS+N++I GY +SG++ SA ELF  M  
Sbjct: 128 VFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEME- 186

Query: 214 RER-------------------------------------NLISWNSVLNGYAQLKSGLQ 236
           RE                                       L   N+ +  Y+Q  S L+
Sbjct: 187 REGLVPDEATFASLLTAVEGPSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGS-LK 245

Query: 237 FAWQIFEKMPE-RDLISWNSMLHGCVKCGKMDDAQALFDKMPKR-----DVVSWANMIDG 290
            + +IF+ + + RDLISWN+ML      G  D+A   F +M +      D+ S+ ++I  
Sbjct: 246 DSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISS 305

Query: 291 YAKLGRVDIARRL---------------------------------------FDEMPKRD 311
            ++ G  D   R+                                       F+ +  +D
Sbjct: 306 CSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKD 365

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
            V+ N+M+ GY ++G S  AL+ F  M C   +  D+ +    L + ++L  +  G  IH
Sbjct: 366 TVSWNSMLTGYSQHGLSADALKFFRCM-CSENVRTDEYAFSAALRSSSELAVLQLGKQIH 424

Query: 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE 431
             +    F+ N     +LI MYSK G I++A K FE+ +  S   WNAMI G A HG  E
Sbjct: 425 GLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQHGQAE 484

Query: 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491
               L  EM +     D ITF GL+ +C+HAGLV EG      M   + +   ++HY C 
Sbjct: 485 NVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACG 544

Query: 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551
           VD+ GRAG ++ A+ LI+ MP EP+ ++W TLL ACR + N+ +   VA HL   +    
Sbjct: 545 VDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQH 604

Query: 552 SSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVR 611
           S+YVLLS+M++GLGMW+D   V+ +MK+R L K+PG S IE++  VH F   DKS  ++ 
Sbjct: 605 STYVLLSSMYSGLGMWSDRATVQRVMKKRGLSKVPGWSLIEVKNEVHSFNAEDKSHPKMD 664

Query: 612 DIYYMLDNMWTPDSVATSC 630
           +IY ML  +   + + ++C
Sbjct: 665 EIYEMLRVLLQVEQMLSNC 683



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 100/203 (49%), Gaps = 15/203 (7%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           QIH  +I +GF  N  +++ L+  +S S    + + AR  F +     +K     WNA+I
Sbjct: 422 QIHGLVIHSGFASNDFVSSSLIFMYSKSG---IIDDARKSFEE----ADKSSSVPWNAMI 474

Query: 92  KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
             Y+     +   ++F  ML     +D  +   ++ +CS  GL++EG +I   + +  +G
Sbjct: 475 FGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTM-ETKYG 533

Query: 152 SDLFLQN--CLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMIDGYVKSGNIESARE-- 206
             L +++  C + LY R G L+ A++L D M    D++ + +++      GN+E A +  
Sbjct: 534 VPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVA 593

Query: 207 --LFDSMPIRERNLISWNSVLNG 227
             LF + P +    +  +S+ +G
Sbjct: 594 SHLFVAEPRQHSTYVLLSSMYSG 616


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 151/357 (42%), Positives = 231/357 (64%), Gaps = 1/357 (0%)

Query: 264 GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV 323
           G +   +A F ++   DVV    M+   +  G VD AR LFD MP+RD VA NAM+ GYV
Sbjct: 173 GDVGAVRAAFAEIVSPDVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYV 232

Query: 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG 383
           R G S +AL +FD MQ +  +   + +LV VL+A AQ+G +++G+ +H Y+      ++ 
Sbjct: 233 RVGRSREALGLFDEMQ-KAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSV 291

Query: 384 KHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
             G AL+DMYSKCG +  +++VFE + + ++  W + ++GLA++G+GE   +L   ME  
Sbjct: 292 TLGTALVDMYSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESA 351

Query: 444 SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503
            +EP+ +TF  +L  C+ AGLV+EG  CF+ M+  HK+EP L+HYGCMVD+ GRAG ++ 
Sbjct: 352 GMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDD 411

Query: 504 ARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563
           A + I  MP+EP++ +W  LL+A R + N+++G+     L  ++S N +++VLLSN++A 
Sbjct: 412 AVDFINSMPVEPHEGVWGALLNASRIHNNVDLGKHAMHKLTEIESKNDAAHVLLSNIYAE 471

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
              W    +VR+MMK + +KK+PGCS IE++G VHEFFV  KS  + +DI  ML  M
Sbjct: 472 SHNWKGVSKVRNMMKSKGVKKMPGCSAIEVDGKVHEFFVGSKSHPRYKDIQTMLAEM 528



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 153/316 (48%), Gaps = 19/316 (6%)

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
            +H    +    +D  +Q+  +S+Y   G +   R  F ++   D V   +M+      G
Sbjct: 145 SVHAAAFQHGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVSPDVVCVTAMLGALSAGG 204

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----ISWNS 255
           ++++ARELFD MP  +R+ ++WN++L GY ++    + A  +F++M +  +    ++  S
Sbjct: 205 DVDTARELFDGMP--QRDHVAWNAMLTGYVRVGRSRE-ALGLFDEMQKAGVAVSEVTLVS 261

Query: 256 MLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPKRD 311
           +L  C + G ++    +   +  R     V     ++D Y+K G V ++  +F+ M +R+
Sbjct: 262 VLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERN 321

Query: 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH 371
           +    + + G   NG   + LE+F  M+    + P+  + V VL   +  G +++G A  
Sbjct: 322 IYTWTSALSGLAMNGMGEECLELFKRME-SAGMEPNGVTFVAVLRGCSVAGLVEEGRACF 380

Query: 372 RYLEKDQFSLNG--KHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIHG 428
             + KD+  +    +H   ++D+Y + G +++A+     +  +     W A++N   IH 
Sbjct: 381 DSM-KDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALLNASRIHN 439

Query: 429 ---LGELAFDLLMEME 441
              LG+ A   L E+E
Sbjct: 440 NVDLGKHAMHKLTEIE 455



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D   WNA++  Y      +EAL +F  M   GV+V + +   VL AC+++G +E G+ 
Sbjct: 218 QRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVLTACAQMGALERGMW 277

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  +        + L   L+ +Y +CG +  + ++F+ M  R+  ++ S + G   +G 
Sbjct: 278 VHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGM 337

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
            E   ELF  M                     +G+           E + +++ ++L GC
Sbjct: 338 GEECLELFKRME-------------------SAGM-----------EPNGVTFVAVLRGC 367

Query: 261 VKCGKMDDAQALFDKMP-KRDVVSWAN----MIDGYAKLGRVDIARRLFDEMP 308
              G +++ +A FD M  K  V  W      M+D Y + GR+D A    + MP
Sbjct: 368 SVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMP 420


>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Glycine max]
          Length = 534

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 168/461 (36%), Positives = 269/461 (58%), Gaps = 14/461 (3%)

Query: 168 GYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM------PIRERNLISW 221
           G + +A  LF  +   +   +N++I G+ +S     A  LF  M      P R    +++
Sbjct: 72  GDINYAYLLFTTIPSPNLYCWNTIIRGFSRSSTPHLAISLFVDMLCSSVLPQR----LTY 127

Query: 222 NSVLNGYAQLKSGL---QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK 278
            SV   YAQL +G    Q   ++ +   E+D    N++++     G + +A+ +FD++  
Sbjct: 128 PSVFKAYAQLGAGYDGAQLHGRVVKLGLEKDQFIQNTIIYMYANSGLLSEARRVFDELVD 187

Query: 279 RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM 338
            DVV+  +MI G AK G VD +RRLFD MP R  V  N+M+ GYVRN   M+ALE+F  M
Sbjct: 188 LDVVACNSMIMGLAKCGEVDKSRRLFDNMPTRTRVTWNSMISGYVRNKRLMEALELFRKM 247

Query: 339 QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS 398
           Q E  + P + ++V +LSA A LG +  G  +H Y+++  F LN     A+IDMY KCG 
Sbjct: 248 QGE-RVEPSEFTMVSLLSACAHLGALKHGEWVHDYVKRGHFELNVIVLTAIIDMYCKCGV 306

Query: 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458
           I  AI+VFE      +  WN++I GLA++G    A +   ++E   ++PD ++F G+L A
Sbjct: 307 IVKAIEVFEASPTRGLSCWNSIIIGLALNGYERKAIEYFSKLEASDLKPDHVSFIGVLTA 366

Query: 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDV 518
           C + G V +    F LM   +++EP ++HY CMV++LG+A  +E A  LI+ MP++ + +
Sbjct: 367 CKYIGAVGKARDYFSLMMNKYEIEPSIKHYTCMVEVLGQAALLEEAEQLIKGMPLKADFI 426

Query: 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578
           IW +LLS+CR + N+ + +  A+ +  ++ S++S Y+L+SN+ A    + +A   R +M+
Sbjct: 427 IWGSLLSSCRKHGNVEIAKRAAQRVCELNPSDASGYLLMSNVQAASNQFEEAMEQRILMR 486

Query: 579 ERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDN 619
           ER  +K PGCS IEL G VHEF    +   + R+IYY+L++
Sbjct: 487 ERLAEKEPGCSSIELYGEVHEFLAGGRLHPKAREIYYLLND 527



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 144/508 (28%), Positives = 241/508 (47%), Gaps = 64/508 (12%)

Query: 8   NQPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEF 67
           +QPC +     +L  +C  + D+ +IHA +I TG   +T   ++++   +SS        
Sbjct: 24  DQPCLT-----MLQTQCTNMKDLQKIHAHIIKTGLAHHTVAASRVLTFCASSSGD----- 73

Query: 68  ARYIFFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
              I + Y  F     P  + WN II+ +S    P  A+ +F  ML + V   + +   V
Sbjct: 74  ---INYAYLLFTTIPSPNLYCWNTIIRGFSRSSTPHLAISLFVDMLCSSVLPQRLTYPSV 130

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
            KA ++LG   +G Q+HG + K+    D F+QN +I +Y   G L  AR++FD++   D 
Sbjct: 131 FKAYAQLGAGYDGAQLHGRVVKLGLEKDQFIQNTIIYMYANSGLLSEARRVFDELVDLDV 190

Query: 186 VSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM 245
           V+ NSMI G  K G ++ +R LFD+MP R R  ++WNS+++GY + K  ++ A ++F KM
Sbjct: 191 VACNSMIMGLAKCGEVDKSRRLFDNMPTRTR--VTWNSMISGYVRNKRLME-ALELFRKM 247

Query: 246 P----ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRV 297
                E    +  S+L  C   G +   + + D + +     +V+    +ID Y K G +
Sbjct: 248 QGERVEPSEFTMVSLLSACAHLGALKHGEWVHDYVKRGHFELNVIVLTAIIDMYCKCGVI 307

Query: 298 DIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357
             A  +F+  P R +   N+++ G   NGY  KA+E F  ++    L PD  S + VL+A
Sbjct: 308 VKAIEVFEASPTRGLSCWNSIIIGLALNGYERKAIEYFSKLEAS-DLKPDHVSFIGVLTA 366

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
              +G + K         +D FSL       +++ Y     IE +IK           H+
Sbjct: 367 CKYIGAVGKA--------RDYFSL-------MMNKY----EIEPSIK-----------HY 396

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
             M+  L    L E A  L+  M    ++ D I +  LL++C   G V+   +     +R
Sbjct: 397 TCMVEVLGQAALLEEAEQLIKGM---PLKADFIIWGSLLSSCRKHGNVE---IAKRAAQR 450

Query: 478 IHKLEP-ELQHYGCMVDILGRAGHIEAA 504
           + +L P +   Y  M ++   +   E A
Sbjct: 451 VCELNPSDASGYLLMSNVQAASNQFEEA 478


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 205/682 (30%), Positives = 335/682 (49%), Gaps = 82/682 (12%)

Query: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72
           S  + L L ++  +++ + Q HA+++  GF  +  L TKL    S         +AR IF
Sbjct: 19  SKNNFLDLFKRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAI---YYARDIF 75

Query: 73  FKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFC-LMLDNGVSVDKFSASLVLKACSR 131
                  ++ D FL+N +++ +S    P  +L +F  L     +  +  + +  + A S 
Sbjct: 76  LSV----QRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASG 131

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
                 G  IHG        S+L L + ++ +Y +   +E AR++FD+M  +D++ +N+M
Sbjct: 132 FRDDRAGCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTM 191

Query: 192 IDGYVKSG----NIESAREL-------------FDSMP----IRERNL------------ 218
           I GY K+     +I+  R+L              D +P    ++E  L            
Sbjct: 192 ISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTG 251

Query: 219 -ISWNSVLNGYAQLKSG---LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFD 274
             S + VL G+  L S    ++ A  +F +    D++++N+M+HG    G+ + + +LF 
Sbjct: 252 CYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFK 311

Query: 275 -------KMPKRDVVSWANM---------IDGYA--------------------KLGRVD 298
                  K+    +VS   +         I GY+                    KL  ++
Sbjct: 312 ELMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIE 371

Query: 299 IARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
            AR+LFDE P++ + + NAM+ GY +NG +  A+ +F  MQ   +  P+  ++  +LSA 
Sbjct: 372 SARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEF-SPNPVTITCILSAC 430

Query: 359 AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWN 418
           AQLG +  G  +H  +    F  +     ALI MY+KCGSI  A ++F+ +   +   WN
Sbjct: 431 AQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWN 490

Query: 419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRI 478
            MI+G  +HG G+ A  +  EM    I P  +TF  +L AC+HAGLVKEG   F  M   
Sbjct: 491 TMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHR 550

Query: 479 HKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEP 538
           +  EP ++HY C+VDILGRAGH++ A   IE MP++P   +W TLL ACR +++ N+   
Sbjct: 551 YGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLART 610

Query: 539 VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVH 598
           V++ L  +D  N   +VLLSN+ +    +  A  VR   K+R L K PG + IE+    H
Sbjct: 611 VSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPH 670

Query: 599 EFFVRDKSRLQVRDIYYMLDNM 620
            F   D+S  QV+ I+  L+ +
Sbjct: 671 VFTSGDQSHPQVKAIHEKLEKL 692


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 175/564 (31%), Positives = 291/564 (51%), Gaps = 46/564 (8%)

Query: 65  TEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL 124
           TE A+ +F+      + +D   W+AII        P+EAL +F  M +  +  ++ +   
Sbjct: 380 TEKAKQLFWGL----QGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMS 435

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           +L AC+ L L++ G  IH    K    SDL     L+S+Y +CG+   A   F++M    
Sbjct: 436 ILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMS--- 492

Query: 185 SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK---SGLQFAWQI 241
                                          R++++WNS++NGYAQ+    + +   +++
Sbjct: 493 ------------------------------SRDIVTWNSLINGYAQIGDPYNAIDMFYKL 522

Query: 242 FEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRV 297
                  D  +   ++  C     +D    +   + K     D      +ID YAK G +
Sbjct: 523 RLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSL 582

Query: 298 DIARRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356
             A  LF++    +D V  N ++  Y++NG++ +A+  F  M+ E + HP+  + V VL 
Sbjct: 583 PSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENF-HPNSVTFVSVLP 641

Query: 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDH 416
           A A L    +G+A H  + +  F  N   G +LIDMY+KCG +  + K+F +++      
Sbjct: 642 AAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVS 701

Query: 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476
           WNAM++G A+HG G+ A  L   M+   ++ D ++F  +L+AC H GLV+EG   F  M 
Sbjct: 702 WNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMS 761

Query: 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536
             + ++P+L+HY CMVD+LGRAG  +     I+ MP+EP+  +W  LL +CR + N+ +G
Sbjct: 762 DKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLG 821

Query: 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGV 596
           E    HL+ ++  N + +V+LS+++A  G W DA + RS M +  LKK PGCSW+EL+  
Sbjct: 822 EVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNK 881

Query: 597 VHEFFVRDKSRLQVRDIYYMLDNM 620
           VH F V DKS  Q+  ++ + + +
Sbjct: 882 VHAFRVGDKSHPQLESMHLLWNTL 905



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 161/583 (27%), Positives = 273/583 (46%), Gaps = 89/583 (15%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFS-SSPCTPLTEFARYIFFKYHAF 78
           LL  CK LN + QIHA++I +GF K+ H  T L+  +S    C    + AR +F      
Sbjct: 38  LLSSCKHLNPLLQIHAQIIVSGF-KHHHSITHLINLYSLFHKC----DLARSVF------ 86

Query: 79  REKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
               +P   LWN++I+ Y+      EAL M+  M++ G+  DK++ + VLKAC+    ++
Sbjct: 87  DSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQ 146

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           EG+  HG + +     D+F+   L+ +Y + G L+ AR++FDKM  RD V++N+MI G  
Sbjct: 147 EGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLS 206

Query: 197 KSGNIESARELFDSMPIR--ERNLISW-----------------------------NSVL 225
           +S +   A + F SM +   E + +S                              ++V 
Sbjct: 207 QSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVS 266

Query: 226 NGYAQLKS---GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV- 281
           NG   L S    +  A ++F++M ++D +SW +M+ G    G   +   LFDKM   +V 
Sbjct: 267 NGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVR 326

Query: 282 ----------VSWANMID----------------------------GYAKLGRVDIARRL 303
                     ++ A  ID                             YAK G  + A++L
Sbjct: 327 INKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQL 386

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
           F  +  RD+VA +A++   V+ GY  +AL +F  MQ +  + P+  +L+ +L A A L  
Sbjct: 387 FWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQ-KMKPNRVTLMSILPACADLSL 445

Query: 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING 423
           +  G +IH +  K     +   G AL+ MY+KCG    A+  F ++    +  WN++ING
Sbjct: 446 LKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLING 505

Query: 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483
            A  G    A D+  ++   +I PD  T  G++ ACA    + +G     L+ ++   E 
Sbjct: 506 YAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKL-GFES 564

Query: 484 ELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526
           +      ++D+  + G + +A  L        ++V W  +++A
Sbjct: 565 DCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 178/436 (40%), Gaps = 70/436 (16%)

Query: 24  CKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE 80
           C  LND++Q   IH  ++  GF  + H+   L+  ++     P  EF     F    F  
Sbjct: 541 CALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEF----LFNKTDF-- 594

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
            KD   WN II  Y      KEA+  F  M       +  +   VL A + L    EG+ 
Sbjct: 595 TKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA 654

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
            H  + ++ F S+  + N LI +Y +CG L ++ +LF++M  +D+VS+N+M+ GY   G+
Sbjct: 655 FHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGH 714

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGC 260
            + A  LF  M                               E   + D +S+ S+L  C
Sbjct: 715 GDRAIALFSLMQ------------------------------ESQVQIDSVSFVSVLSAC 744

Query: 261 VKCGKMDDAQALFDKMP-----KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVAC 315
              G +++ + +F  M      K D+  +A M+D   + G  D        MP       
Sbjct: 745 RHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGV 804

Query: 316 NAMMGGYVRNGYSMKALEI-FDNMQCELYLHPDDASLVIVLSAI-AQLGH-IDKGVAIHR 372
              + G  R   ++K  E+  D++   + L P + +  +VLS+I AQ G   D G A  +
Sbjct: 805 WGALLGSCRMHSNVKLGEVALDHL---VKLEPRNPAHFVVLSSIYAQSGRWADAGKARSK 861

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
               +   L    G + +++ +K  +     K   Q+E   +  WN              
Sbjct: 862 M---NDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHL-LWNT------------- 904

Query: 433 AFDLLMEMERLSIEPD 448
              LL +ME++   PD
Sbjct: 905 ---LLEKMEKIGYVPD 917



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 10/191 (5%)

Query: 389 LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD 448
           LI++YS     + A  VF+   + S   WN+MI           A ++   M    +EPD
Sbjct: 69  LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPD 128

Query: 449 DITFTGLLNACAHAGLVKEGLLCF-ELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNL 507
             TFT +L AC  A  ++EG+    E+ RR   LE ++     +VD+  + G ++ AR +
Sbjct: 129 KYTFTFVLKACTGALNLQEGVWFHGEIDRR--GLERDVFIGAGLVDMYSKMGDLKRAREV 186

Query: 508 IEDMPMEPNDVIWRTLLSACRNYENL--NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565
            + MP + + V W  +++     E+    V    +  L+G++ S+ S    L N+F G+ 
Sbjct: 187 FDKMP-KRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVS----LLNLFPGIC 241

Query: 566 MWNDARRVRSM 576
             ++    RS+
Sbjct: 242 KLSNIELCRSI 252


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 191/499 (38%), Positives = 273/499 (54%), Gaps = 32/499 (6%)

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
            IH    K     D F+   L+ +Y +  Y++ A +LF      +   Y S+IDG+V  G
Sbjct: 45  SIHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFG 104

Query: 200 NIESARELFDSMP------------------IRERNLISWNSVLNGYAQLKSGLQFAWQI 241
           +   A  LF  M                   + +R L S   V +G   LKSGL     I
Sbjct: 105 SYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEV-HGLV-LKSGLGLDRSI 162

Query: 242 FEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIAR 301
             K+ E         L+G  KCG ++DA+ +FD MP+RDVV+   MI      G V+ A 
Sbjct: 163 ALKLVE---------LYG--KCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAI 211

Query: 302 RLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQL 361
            +F+EM  RD V    ++ G VRNG   + LE+F  MQ +  + P++ + V VLSA AQL
Sbjct: 212 EVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVK-GVEPNEVTFVCVLSACAQL 270

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
           G ++ G  IH Y+ K    +N     ALI+MYS+CG I+ A  +F+ +    V  +N+MI
Sbjct: 271 GALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMI 330

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
            GLA+HG    A +L  EM +  + P+ ITF G+LNAC+H GLV  G   FE M  IH +
Sbjct: 331 GGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGI 390

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541
           EPE++HYGCMVDILGR G +E A + I  M +E +D +  +LLSAC+ ++N+ +GE VAK
Sbjct: 391 EPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMGEKVAK 450

Query: 542 HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFF 601
            L      +S S+++LSN +A LG W+ A  VR  M++  + K PGCS IE+   +HEFF
Sbjct: 451 LLSEHYRIDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFF 510

Query: 602 VRDKSRLQVRDIYYMLDNM 620
             D    + + IY  L+ +
Sbjct: 511 SGDLRHPERKRIYKKLEEL 529



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 126/474 (26%), Positives = 217/474 (45%), Gaps = 63/474 (13%)

Query: 3   VSANYNQPCNSTQST-------LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVAS 55
           + AN   P +S+  +        LL +  K    V  IH   I T   ++  +  +L+  
Sbjct: 9   IIANLPNPHSSSHDSNLRRVIISLLHKNRKNPKHVQSIHCHAIKTRTSQDPFVAFELLRV 68

Query: 56  FSSSPCTPLTEFARYIFFKYHAFREKKDP--FLWNAIIKTYSHGLDPKEALVMFCLMLDN 113
           +             YI      FR  ++P  +L+ ++I  +       +A+ +FC M+  
Sbjct: 69  YCK---------VNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRK 119

Query: 114 GVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFA 173
            V  D ++ + +LKAC     +  G ++HGL+ K   G D  +   L+ LY +CG LE A
Sbjct: 120 HVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDA 179

Query: 174 RQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGY---AQ 230
           R++FD M  RD V+   MI      G +E A E+F+ M    R+ + W  V++G     +
Sbjct: 180 RKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGT--RDTVCWTMVIDGLVRNGE 237

Query: 231 LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV-----VSWA 285
              GL+   ++  K  E + +++  +L  C + G ++  + +   M K  V     V+ A
Sbjct: 238 FNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGA 297

Query: 286 NMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLH 345
            +I+ Y++ G +D A+ LFD +  +DV   N+M+GG   +G S++A+E+F  M  E  + 
Sbjct: 298 -LINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKE-RVR 355

Query: 346 PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKV 405
           P+  + V VL+A +  G +D G                             G I  ++++
Sbjct: 356 PNGITFVGVLNACSHGGLVDLG-----------------------------GEIFESMEM 386

Query: 406 FEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
              IE   V+H+  M++ L   G  E AFD +    R+ +E DD     LL+AC
Sbjct: 387 IHGIEP-EVEHYGCMVDILGRVGRLEEAFDFI---GRMGVEADDKMLCSLLSAC 436


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 194/620 (31%), Positives = 305/620 (49%), Gaps = 79/620 (12%)

Query: 72   FFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131
             F Y    +  D   WN  +  +    +  EA+  F  M+++ V+ D  +  ++L   + 
Sbjct: 859  LFMYDDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAG 918

Query: 132  LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
            L  +E G QIHG++ +      + + NCLI++YV+ G +  AR +F +M   D VS+N+M
Sbjct: 919  LNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTM 978

Query: 192  IDGYVKSGNIESARELFDSMPIRERNL---ISWNSVLNGYAQLKSGLQFAWQIFE----- 243
            I G   SG  E +  +F  + +R   L    +  SVL   + L  G   A QI       
Sbjct: 979  ISGCALSGLEECSVGMFVDL-LRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKA 1037

Query: 244  --------------------KMPER----------DLISWNSMLHGCVKCGKMDDAQALF 273
                                KM E           DL SWN+M+HG +  G    A  L+
Sbjct: 1038 GVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLY 1097

Query: 274  DKMPKR---------------------------------------DVVSWANMIDGYAKL 294
              M +                                        D+   + ++D Y K 
Sbjct: 1098 ILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKC 1157

Query: 295  GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIV 354
            G ++ ARR+F+E+P  D VA   M+ G V NG    AL  + +M+    + PD+ +   +
Sbjct: 1158 GEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLS-KVQPDEYTFATL 1216

Query: 355  LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV 414
            + A + L  +++G  IH    K   + +     +L+DMY+KCG+IE+A  +F++     +
Sbjct: 1217 VKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRI 1276

Query: 415  DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474
              WNAMI GLA HG  E A     EM+   + PD +TF G+L+AC+H+GLV E    F  
Sbjct: 1277 ASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYS 1336

Query: 475  MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534
            M++I+ +EPE++HY C+VD L RAG I  A  +I  MP E +  ++RTLL+ACR   +  
Sbjct: 1337 MQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRE 1396

Query: 535  VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE 594
             G+ VA+ L+ ++ S+S++YVLLSN++A    W +    R+MM++ N+KK PG SW++L+
Sbjct: 1397 TGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLK 1456

Query: 595  GVVHEFFVRDKSRLQVRDIY 614
              VH F   D+S  +   IY
Sbjct: 1457 NKVHLFVAGDRSHEETDVIY 1476



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 146/565 (25%), Positives = 244/565 (43%), Gaps = 95/565 (16%)

Query: 32   QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
            + HAR++T+G   +  LT  L+  +S   C  L+  AR +F         +D   WNAI+
Sbjct: 647  RAHARILTSGHHPDRFLTNNLITMYSK--CGSLSS-ARKLFDT--TPDTSRDLVTWNAIL 701

Query: 92   KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
               +H    ++   +F L+  + VS  + + + V K C           +HG   K+   
Sbjct: 702  S--AHADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQ 759

Query: 152  SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELF--- 208
             D+F+   L+++Y + G +  AR LFD MG+RD V +N M+  YV +G    A  LF   
Sbjct: 760  WDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEF 819

Query: 209  -------DSMPI--------RERNLISWNSVLNGYAQLKSGLQFAWQIF---EKMPERDL 250
                   D + +         ++N++ W        QLK    +  ++F   +     D+
Sbjct: 820  NRTGLRPDDVTLCTLARVVKSKQNVLEW--------QLKQLKAYGTKLFMYDDDDDGSDV 871

Query: 251  ISWNSMLHGCVKCGKMDDAQALF-DKMPKR------------------------------ 279
            I+WN  L   ++ G+  +A   F D +  R                              
Sbjct: 872  IAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGI 931

Query: 280  -------DVVSWAN-MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKA 331
                    VVS  N +I+ Y K G V  AR +F +M + D+V+ N M+ G   +G    +
Sbjct: 932  VVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECS 991

Query: 332  LEIFDNMQCELYLHPDDASLVIVLSAIAQLG---HIDKGVAIHRYLEKDQFSLNGKHGVA 388
            + +F ++     L PD  ++  VL A + LG   H+     IH    K    L+      
Sbjct: 992  VGMFVDL-LRGGLLPDQFTVASVLRACSSLGGGCHL--ATQIHACAMKAGVVLDSFVSTT 1048

Query: 389  LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD 448
            LID+YSK G +E A  +F   +   +  WNAM++G  + G    A  L + M+      +
Sbjct: 1049 LIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERAN 1108

Query: 449  DITFTGLLNACAHAGLVKEGLLCFELMRRIHKL------EPELQHYGCMVDILGRAGHIE 502
             IT   L NA   AG    GL+  +  ++I  +        +L     ++D+  + G +E
Sbjct: 1109 QIT---LANAAKAAG----GLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEME 1161

Query: 503  AARNLIEDMPMEPNDVIWRTLLSAC 527
            +AR +  ++P  P+DV W T++S C
Sbjct: 1162 SARRIFNEIP-SPDDVAWTTMISGC 1185



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 171/361 (47%), Gaps = 26/361 (7%)

Query: 20   LLRKCKTLND----VNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
            +LR C +L        QIHA  +  G + ++ ++T L+  +S S      E A ++F   
Sbjct: 1013 VLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSG---KMEEAEFLFVNQ 1069

Query: 76   HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
              F    D   WNA++  Y    D  +AL ++ LM ++G   ++ + +   KA   L  +
Sbjct: 1070 DGF----DLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGL 1125

Query: 136  EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195
            ++G QI  ++ K  F  DLF+ + ++ +Y++CG +E AR++F+++   D V++ +MI G 
Sbjct: 1126 KQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGC 1185

Query: 196  VKSGNIESARELFDSMPIRE--------RNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
            V++G  E A   +  M + +          L+   S+L     L+ G Q      +    
Sbjct: 1186 VENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTA---LEQGRQIHANTVKLNCA 1242

Query: 248  RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
             D     S++    KCG ++DA+ LF +     + SW  MI G A+ G  + A + F+EM
Sbjct: 1243 FDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEM 1302

Query: 308  PKR----DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
              R    D V    ++     +G   +A E F +MQ    + P+      ++ A+++ G 
Sbjct: 1303 KSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGR 1362

Query: 364  I 364
            I
Sbjct: 1363 I 1363



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 166/395 (42%), Gaps = 87/395 (22%)

Query: 138  GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM--GIRDSVSYNSMIDGY 195
            G + H  +       D FL N LI++Y +CG L  AR+LFD      RD V++N+++   
Sbjct: 645  GKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAIL--- 701

Query: 196  VKSGNIESARELFDSMPIRERNLISWN--------------------SVLNGYAQLKSGL 235
              S + + AR+ F    +  R+ +S                        L+GYA +K GL
Sbjct: 702  --SAHADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYA-VKIGL 758

Query: 236  QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG 295
            Q  W +F            ++++   K G++ +A+ LFD M  RDVV W  M+  Y   G
Sbjct: 759  Q--WDVFVA---------GALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTG 807

Query: 296  RVDIARRLFDEMPK---------------------------------------------- 309
                A  LF E  +                                              
Sbjct: 808  LEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDD 867

Query: 310  -RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
              DV+A N  +  +++ G + +A++ F +M     +  D  + V++LS +A L  ++ G 
Sbjct: 868  GSDVIAWNKTLSWFLQRGETWEAVDCFVDM-INSRVACDGLTFVVMLSVVAGLNCLELGK 926

Query: 369  AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHG 428
             IH  + +         G  LI+MY K GS+  A  VF Q+ +  +  WN MI+G A+ G
Sbjct: 927  QIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSG 986

Query: 429  LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAG 463
            L E +  + +++ R  + PD  T   +L AC+  G
Sbjct: 987  LEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLG 1021



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 144/337 (42%), Gaps = 46/337 (13%)

Query: 66   EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
            E AR IF +  +     D   W  +I         + AL  +  M  + V  D+++ + +
Sbjct: 1161 ESARRIFNEIPS----PDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATL 1216

Query: 126  LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
            +KACS L  +E+G QIH    K+    D F+   L+ +Y +CG +E AR LF +      
Sbjct: 1217 VKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRI 1276

Query: 186  VSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM 245
             S+N+MI G  + GN E A + F+ M  R                   G+          
Sbjct: 1277 ASWNAMIVGLAQHGNAEEALQFFEEMKSR-------------------GV---------T 1308

Query: 246  PERDLISWNSMLHGCVKCGKMDDAQALFDKMPK-----RDVVSWANMIDGYAKLGRVDIA 300
            P+R  +++  +L  C   G + +A   F  M K      ++  ++ ++D  ++ GR+  A
Sbjct: 1309 PDR--VTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREA 1366

Query: 301  RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE--LYLHPDDASLVIVLSAI 358
             ++   MP       +A M   + N   ++          E  L L P D++  ++LS +
Sbjct: 1367 EKVISSMP----FEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNV 1422

Query: 359  AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395
                +  + VA  R + + + ++    G + +D+ +K
Sbjct: 1423 YAAANQWENVASARNMMR-KANVKKDPGFSWVDLKNK 1458


>gi|115474919|ref|NP_001061056.1| Os08g0162200 [Oryza sativa Japonica Group]
 gi|28564637|dbj|BAC57819.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623025|dbj|BAF22970.1| Os08g0162200 [Oryza sativa Japonica Group]
 gi|125602282|gb|EAZ41607.1| hypothetical protein OsJ_26139 [Oryza sativa Japonica Group]
 gi|215741371|dbj|BAG97866.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 535

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 178/526 (33%), Positives = 288/526 (54%), Gaps = 24/526 (4%)

Query: 87  WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146
           W   I+  +    P+ A+ ++   L +G     F+ + VLK+ SRL L      +     
Sbjct: 12  WTLAIRAAADQGRPRRAVALYLSSLRSGRRPCPFALAAVLKSVSRLLLPAAHPLLAAAAA 71

Query: 147 -------KVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS----------VSYN 189
                  ++   +  + +  L  LY R      A  L D+   R            VS N
Sbjct: 72  SIHAHLLRLGLLAHPYPRAALAHLYARLPDPSRAHSLLDETPPRPPRGRAGAHSFLVSRN 131

Query: 190 SMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPER 248
           S++   ++SG++ +AR LFD MP+R+  ++SWNS++ G A  K+G L  A ++F+KMPER
Sbjct: 132 SLLASLLRSGDLAAARALFDRMPVRD--VVSWNSMVAGLA--KAGHLDAAIELFDKMPER 187

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           +  SWN+++ G +  G +  A+ LF++MP R  VSW  MI GYA  G V  A  LF+ M 
Sbjct: 188 NAASWNAVMCGYIAQGDLAQARELFEQMPVRSNVSWITMISGYANSGDVHAAGELFERME 247

Query: 309 -KRDVVACNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDK 366
            K+D+ A NAM+  Y +NG + +AL +F+ M +  +++ P++ +   V+SA +QLG +  
Sbjct: 248 NKKDLYAWNAMIACYAKNGCAREALAVFNRMLKPHVWVMPNEKTFSSVISACSQLGDLRF 307

Query: 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
           G+    ++      L+     AL+D+++K G I+ A  +F  +    V  ++A+I G  +
Sbjct: 308 GLWAESFMGSVGIELDDHLRTALVDLHTKSGRIDRAFDLFRGLGMRDVVSYSAIIVGCGM 367

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           +G    A  L  EM    I P+ +TF GLL+A ++AGL++E   CF  M   +K+ P ++
Sbjct: 368 NGKFNEAVSLFKEMSDAKISPNAVTFVGLLSAYSNAGLMEEARACFASMTEKYKISPSME 427

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HY  MVD+LGR+G ++ A  LI  MPM+P+  IW  LL ACR + N+ +GE VA     +
Sbjct: 428 HYTIMVDLLGRSGKLDEAYQLIMQMPMKPDASIWGALLLACRLHNNVELGEIVASKCFEL 487

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
           +   S  Y+LL N+++    W   +R+R +M ER L K+PG SW++
Sbjct: 488 EPGESGYYILLGNIYSEANKWEKVKRLRKIMAERGLNKMPGSSWVQ 533



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 113/226 (50%), Gaps = 15/226 (6%)

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV--DKFSASLVLKACSRL 132
           +     KKD + WNA+I  Y+     +EAL +F  ML   V V  ++ + S V+ ACS+L
Sbjct: 243 FERMENKKDLYAWNAMIACYAKNGCAREALAVFNRMLKPHVWVMPNEKTFSSVISACSQL 302

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
           G +  GL     +  V    D  L+  L+ L+ + G ++ A  LF  +G+RD VSY+++I
Sbjct: 303 GDLRFGLWAESFMGSVGIELDDHLRTALVDLHTKSGRIDRAFDLFRGLGMRDVVSYSAII 362

Query: 193 DGYVKSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERD 249
            G   +G    A  LF  M   +   N +++  +L+ Y+   +GL + A   F  M E+ 
Sbjct: 363 VGCGMNGKFNEAVSLFKEMSDAKISPNAVTFVGLLSAYSN--AGLMEEARACFASMTEKY 420

Query: 250 LISWNSMLHGCV------KCGKMDDAQALFDKMP-KRDVVSWANMI 288
            IS  SM H  +      + GK+D+A  L  +MP K D   W  ++
Sbjct: 421 KIS-PSMEHYTIMVDLLGRSGKLDEAYQLIMQMPMKPDASIWGALL 465


>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 178/526 (33%), Positives = 285/526 (54%), Gaps = 50/526 (9%)

Query: 110 MLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY 169
           M D     D  S + +L   ++ G +++  ++   + +     ++   N ++S Y+  G+
Sbjct: 143 MFDQMPETDCVSWNTMLSGYAKSGTMDKAEELFNEMPE----RNVVSWNAMVSGYLMNGH 198

Query: 170 LEFARQLFDKMGIRDSVS------------------------------------YNSMID 193
           +E A + F  M  RDS S                                    YN++I 
Sbjct: 199 VEKAIEFFKLMPKRDSASLRALVSGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIA 258

Query: 194 GYVKSGNIESARELFDSMPI------RERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247
           GY + G    AR+LFD +P+        RN+ISWNS++  Y +    +  A ++F+KM E
Sbjct: 259 GYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVR-AGDIVSARELFDKMVE 317

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307
           RD  SWN+M+ G V+   M +A  LF +MP+ D +SW  MI G++++G + +A  LF  +
Sbjct: 318 RDTFSWNTMISGYVQILDMKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRI 377

Query: 308 PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367
           P++ +V+ N+M+ GY +N     A+ IF  MQ E    PD  +L  +LSA A L  +  G
Sbjct: 378 PEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGK-KPDRHTLSSILSACAGLVDLVLG 436

Query: 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAI 426
             IH+ + K  F  +     +L+ MYS+CG+I  A  VF+++     V  WNAMI G A 
Sbjct: 437 TQIHQLVTK-AFIADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAY 495

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           HG    A  L   M++ +++P  ITF  +LNACAHAGL++EG   F  M   H ++P+++
Sbjct: 496 HGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVE 555

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HY  +VDI+GR G +E A +LI  MP EP+  +W  LL AC+ + N+ +    A+ L+ +
Sbjct: 556 HYAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGALLGACKVHNNVEMARAAAEALMKL 615

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
              +S+ YVLL NM+A +G W+DA  +R+MM++ N++K  G S ++
Sbjct: 616 QPESSAPYVLLHNMYADVGRWDDAAEMRTMMEKNNVQKDAGYSRVD 661



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 127/446 (28%), Positives = 215/446 (48%), Gaps = 85/446 (19%)

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           + +  N  IS  +R G +  AR+LFD     +++++N MI  YVK   +  AR+LF+ MP
Sbjct: 56  EFYSLNKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMP 115

Query: 213 IRERNLISWNSVLNGYAQLKSGLQF---AWQIFEKMPERDLISWNSMLHGCVKCGKMDDA 269
              R+++SWN +L+GY  +  G +F   A  +F++MPE D +SWN+ML G  K G MD A
Sbjct: 116 --NRDIVSWNLMLSGY--ISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGTMDKA 171

Query: 270 QALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD------------------ 311
           + LF++MP+R+VVSW  M+ GY   G V+ A   F  MPKRD                  
Sbjct: 172 EELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALVSGLIQNDKLV 231

Query: 312 ------------------VVACNAMMGGYVRNGYSMKALEIFDNMQ--CEL-YLHPDDAS 350
                             V A N ++ GY + G + +A ++FD +   C+  Y   +  S
Sbjct: 232 EAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVIS 291

Query: 351 LVIVLSAIAQLGHIDKGVAIH-RYLEKDQFSLNG--KHGVALIDM--------------- 392
              ++    + G I     +  + +E+D FS N      V ++DM               
Sbjct: 292 WNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPEPDT 351

Query: 393 ---------YSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443
                    +S+ GS++ A  +F++I + S+  WN+MI+G   +   + A ++ ++M+  
Sbjct: 352 LSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLE 411

Query: 444 SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE-----PELQHYGCMVDILGRA 498
             +PD  T + +L+ACA       GL+   L  +IH+L       +L     +V +  R 
Sbjct: 412 GKKPDRHTLSSILSACA-------GLVDLVLGTQIHQLVTKAFIADLPINNSLVTMYSRC 464

Query: 499 GHIEAARNLIEDMPMEPNDVIWRTLL 524
           G I  AR + ++M ++ + + W  ++
Sbjct: 465 GAIVEARMVFDEMNLQRDVISWNAMI 490



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 138/465 (29%), Positives = 223/465 (47%), Gaps = 79/465 (16%)

Query: 172 FARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQL 231
           F+    +   + +  S N  I   +++G I  ARELFDS      N I+WN ++  Y + 
Sbjct: 44  FSSSKANSFQVPEFYSLNKKISYLIRTGRINEARELFDS--TEHWNTITWNRMITAYVKR 101

Query: 232 KSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGK--MDDAQALFDKMPKRDVVSWANMID 289
           +  L+ A Q+FE+MP RD++SWN ML G + CG   ++ A+ +FD+MP+ D VSW  M+ 
Sbjct: 102 REMLK-ARQLFEEMPNRDIVSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLS 160

Query: 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA 349
           GYAK G +D A  LF+EMP+R+VV+ NAM+ GY+ NG+  KA+E F     +L    D A
Sbjct: 161 GYAKSGTMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFF-----KLMPKRDSA 215

Query: 350 SLVIVLSAIAQL--------------GHIDKGVAIHRYLEKDQFSLNGKHGVA------- 388
           SL  ++S + Q               G++ KG  +  Y      +  G+ G+A       
Sbjct: 216 SLRALVSGLIQNDKLVEAERILLQYGGNVGKGDLVDAY--NTLIAGYGQKGMAYEARKLF 273

Query: 389 ---------------------LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMING-LAI 426
                                +I  Y + G I +A ++F+++ +     WN MI+G + I
Sbjct: 274 DRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQI 333

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
             + E A +L   M     EPD +++  +++  +  G +K   L  +L +RI   E  L 
Sbjct: 334 LDMKE-ASNLFSRMP----EPDTLSWNMMISGFSEIGSLK---LAHDLFKRIP--EKSLV 383

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPME---PNDVIWRTLLSACRNYENLNVG----EPV 539
            +  M+    +    + A N+   M +E   P+     ++LSAC    +L +G    + V
Sbjct: 384 SWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLV 443

Query: 540 AKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKK 584
            K  I     N+S    L  M++  G   +AR V     E NL++
Sbjct: 444 TKAFIADLPINNS----LVTMYSRCGAIVEARMV---FDEMNLQR 481



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 156/381 (40%), Gaps = 89/381 (23%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           ++D F WN +I  Y   LD KEA  +F  M +                            
Sbjct: 317 ERDTFSWNTMISGYVQILDMKEASNLFSRMPE---------------------------- 348

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
                       D    N +IS +   G L+ A  LF ++  +  VS+NSMI GY K+ +
Sbjct: 349 -----------PDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNED 397

Query: 201 IESARELFDSMPIRER-----NLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNS 255
            + A  +F  M +  +      L S  S   G   L  G Q   Q+  K    DL   NS
Sbjct: 398 YKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIH-QLVTKAFIADLPINNS 456

Query: 256 MLHGCVKCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
           ++    +CG + +A+ +FD+M  +RDV+SW  MI GYA                      
Sbjct: 457 LVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYA---------------------- 494

Query: 315 CNAMMGGYVRNGYSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKG-VAIHR 372
                     +G++ +AL++FD M QC   + P   + + VL+A A  G I++G    + 
Sbjct: 495 ---------YHGFATEALQLFDLMKQCN--VQPSYITFISVLNACAHAGLIEEGRREFNS 543

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI---EDGSVDHWNAMINGLAIHG- 428
            +         +H  AL+D+  + G +E A+ +   +    D +V  W A++    +H  
Sbjct: 544 MVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKAV--WGALLGACKVHNN 601

Query: 429 --LGELAFDLLMEMERLSIEP 447
             +   A + LM+++  S  P
Sbjct: 602 VEMARAAAEALMKLQPESSAP 622



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 116/271 (42%), Gaps = 51/271 (18%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L  C  L D+    QIH +++T  FI +  +   LV  +S   C  + E AR +F + +
Sbjct: 423 ILSACAGLVDLVLGTQIH-QLVTKAFIADLPINNSLVTMYSR--CGAIVE-ARMVFDEMN 478

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
               ++D   WNA+I  Y++     EAL +F LM    V     +   VL AC+  GLIE
Sbjct: 479 L---QRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIE 535

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS-YNSMIDGY 195
           EG +                              EF   + +  GI+  V  Y +++D  
Sbjct: 536 EGRR------------------------------EF-NSMVNTHGIKPQVEHYAALVDII 564

Query: 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM----PERDLI 251
            + G +E A  L +SMP  E +   W ++L G  ++ + ++ A    E +    PE    
Sbjct: 565 GRHGQLEEAMSLINSMPC-EPDKAVWGALL-GACKVHNNVEMARAAAEALMKLQPESS-- 620

Query: 252 SWNSMLHGC-VKCGKMDDAQALFDKMPKRDV 281
           +   +LH      G+ DDA  +   M K +V
Sbjct: 621 APYVLLHNMYADVGRWDDAAEMRTMMEKNNV 651


>gi|357131531|ref|XP_003567390.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Brachypodium distachyon]
          Length = 531

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 166/479 (34%), Positives = 262/479 (54%), Gaps = 36/479 (7%)

Query: 115 VSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAF-GSDLFLQNCLISLYVRCGYLEFA 173
           VS D FS    L A + LGL   G  +H L  ++A   + L + N L+ LY +C  L  A
Sbjct: 77  VSPDHFSLPFALNAAASLGLFRFGASLHALAFRLALVPARLPVANALVDLYAKCDALPAA 136

Query: 174 RQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKS 233
                 +   D+VS+NS+                                 L  +A+L S
Sbjct: 137 HAALASIPAPDAVSFNSL---------------------------------LCAHARLAS 163

Query: 234 GLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAK 293
            +  A  +F  MP R  +SWN+M+   V  G    A+ +FD+MP RD  SW+ +I GY K
Sbjct: 164 -VPAAESLFTSMPSRTQVSWNAMVVVYVNAGDFASARLVFDEMPTRDSSSWSVLIVGYCK 222

Query: 294 LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI 353
            G +  AR LFD+MP +++V   AM+ GY + G   +++ +F  ++  + + PD A++V 
Sbjct: 223 RGSMQSARELFDKMPGKNLVTWTAMINGYAQCGRPKESISLFRELEA-VGIEPDAATMVG 281

Query: 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS 413
           V+S+ +Q+G       +  Y+++ +   N K   AL+DM++KCG++E A+  F +IE   
Sbjct: 282 VISSASQIGSTALAGWVGNYVDRKRIERNEKVLTALVDMHAKCGNVEQALNCFREIEQPD 341

Query: 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFE 473
              + A+I+GLA HG   LA  +   M   ++ PD ITF G+L AC+HAGLV  GL  +E
Sbjct: 342 AYPYTALISGLATHGHSTLALQVFERMRAQAVRPDPITFVGVLTACSHAGLVDMGLDYWE 401

Query: 474 LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENL 533
            M + + ++    HY C+VD+LGRAG I  A ++++ MPM P+      LLSAC+ ++N+
Sbjct: 402 AMVQDYGMDRRADHYACVVDMLGRAGRIVEAFDMVQTMPMGPHPGALGALLSACKTHDNV 461

Query: 534 NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIE 592
            + E VA  L  ++  N+ +Y+LLSN++AG   W +A R+RS+M+ +   K PG +W+E
Sbjct: 462 EIAEIVANKLFELEPRNTGNYILLSNIYAGKEQWEEAERIRSLMRTKLPFKQPGSTWVE 520



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 4/146 (2%)

Query: 66  EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLV 125
           + AR +F K       K+   W A+I  Y+    PKE++ +F  +   G+  D  +   V
Sbjct: 227 QSARELFDKM----PGKNLVTWTAMINGYAQCGRPKESISLFRELEAVGIEPDAATMVGV 282

Query: 126 LKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185
           + + S++G       +   + +     +  +   L+ ++ +CG +E A   F ++   D+
Sbjct: 283 ISSASQIGSTALAGWVGNYVDRKRIERNEKVLTALVDMHAKCGNVEQALNCFREIEQPDA 342

Query: 186 VSYNSMIDGYVKSGNIESARELFDSM 211
             Y ++I G    G+   A ++F+ M
Sbjct: 343 YPYTALISGLATHGHSTLALQVFERM 368


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  301 bits (771), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 154/380 (40%), Positives = 239/380 (62%), Gaps = 6/380 (1%)

Query: 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
           ++D     S+L+    CG +  AQ +FD    +D+ +W ++++ YAK G +D AR+LFDE
Sbjct: 94  DKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDE 153

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQC----ELYLHPDDASLVIVLSAIAQLG 362
           MP+R+V++ + ++ GYV  G   +AL++F  MQ     E ++ P++ ++  VLSA  +LG
Sbjct: 154 MPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLG 213

Query: 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI-EDGSVDHWNAMI 421
            +++G  +H Y++K    ++   G ALIDMY+KCGS+E A +VF  +     V  ++AMI
Sbjct: 214 ALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMI 273

Query: 422 NGLAIHGLGELAFDLLMEMERL-SIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480
             LA++GL +  F L  EM    +I P+ +TF G+L AC H GL+ EG   F++M     
Sbjct: 274 CCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFG 333

Query: 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540
           + P +QHYGCMVD+ GR+G I+ A + I  MPMEP+ +IW +LLS  R   ++   E   
Sbjct: 334 ITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGAL 393

Query: 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600
           K LI +D  NS +YVLLSN++A  G W + + +R  M+ + + K+PGCS++E+EGVVHEF
Sbjct: 394 KRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEF 453

Query: 601 FVRDKSRLQVRDIYYMLDNM 620
            V D+S+ +   IY MLD +
Sbjct: 454 VVGDESQQESERIYAMLDEI 473



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 185/367 (50%), Gaps = 20/367 (5%)

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKE---ALVMFCLMLDNGVSVDKFSASLVLKACSR 131
           +H    K + FLWN II+   H +   +    + ++  M ++ VS D  +   +L +   
Sbjct: 15  FHIRHLKLESFLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHN 74

Query: 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSM 191
              +  G + H  +       D F++  L+++Y  CG L  A+++FD  G +D  ++NS+
Sbjct: 75  PLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSV 134

Query: 192 IDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGY---AQLKSGLQFAWQIFEKMPER 248
           ++ Y K+G I+ AR+LFD MP  ERN+ISW+ ++NGY    + K  L    ++    P  
Sbjct: 135 VNAYAKAGLIDDARKLFDEMP--ERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNE 192

Query: 249 DLISWN-----SMLHGCVKCGKMDDAQ---ALFDKM-PKRDVVSWANMIDGYAKLGRVDI 299
             +  N     ++L  C + G ++  +   A  DK   + D+V    +ID YAK G ++ 
Sbjct: 193 AFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLER 252

Query: 300 ARRLFDEM-PKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358
           A+R+F+ +  K+DV A +AM+      G + +  ++F  M     ++P+  + V +L A 
Sbjct: 253 AKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGAC 312

Query: 359 AQLGHIDKGVAIHRYL-EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDH 416
              G I++G +  + + E+   + + +H   ++D+Y + G I+ A      +  +  V  
Sbjct: 313 VHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLI 372

Query: 417 WNAMING 423
           W ++++G
Sbjct: 373 WGSLLSG 379


>gi|357129947|ref|XP_003566620.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 902

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 180/546 (32%), Positives = 288/546 (52%), Gaps = 38/546 (6%)

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
           KD   WNA++   +H  + +EA+ M   M  +GV+ D+ S + V+ ACS +   E G QI
Sbjct: 365 KDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRATETGKQI 424

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           H L  K +  S+  + + LI  Y + G +E  R++  ++     V  N +I G V++   
Sbjct: 425 HCLAMKHSICSNHAVGSSLIDFYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQNNRE 484

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
           + A +LF  +                   L+ GL+         P     +++S+L GC 
Sbjct: 485 DEAIDLFQQV-------------------LRDGLK---------PSS--FTFSSILSGCT 514

Query: 262 K-----CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK-RDVVAC 315
                  GK      L       D     +++  Y K    + A +L  EMP  +++V  
Sbjct: 515 GLLSSIIGKQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMPEDANKLLIEMPDHKNLVEW 574

Query: 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375
            A++ GY +NGYS ++L  F  M+    +HPD+ +   +L A +++  +  G  IH  + 
Sbjct: 575 TAIVSGYAQNGYSYQSLLSFWRMR-SYDVHPDEVTFASILKACSEMTALSDGKEIHGLII 633

Query: 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS-VDHWNAMINGLAIHGLGELAF 434
           K  F        A+IDMYSKCG I ++ + F++++    +  WN+MI G A +G  + A 
Sbjct: 634 KSGFGSYKTATSAIIDMYSKCGDIISSFEAFKELKSKQDITLWNSMILGFAKNGYADEAL 693

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
            L  +M+   I+ D++TF G+L ACAHAGL+ EG   F+ M +++ + P + HY C +D+
Sbjct: 694 LLFQKMQDSQIKSDEVTFLGVLIACAHAGLISEGRHYFDSMSKVYGIMPRVDHYACFIDL 753

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           LGR GH++ A+ +I ++P  P+ VIW T L+ACR +++   GE  AK L+ ++  NSS+Y
Sbjct: 754 LGRGGHLQEAQEVINELPFRPDGVIWATYLAACRMHKDEERGEIAAKELVELEPQNSSTY 813

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           VLLSNM+A  G W +A+  R  M+E+   K PGCSWI +      F V+DK+ L    IY
Sbjct: 814 VLLSNMYAAAGNWVEAKMAREAMREKGATKFPGCSWITVGNKTSLFLVQDKNHLGALRIY 873

Query: 615 YMLDNM 620
            MLDN+
Sbjct: 874 EMLDNL 879



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 135/491 (27%), Positives = 231/491 (47%), Gaps = 83/491 (16%)

Query: 114 GVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFA 173
           GV  D+F  +  L ACSRLG +  G Q H    K   GS  F    L+++Y RCG +  A
Sbjct: 26  GVRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDA 85

Query: 174 RQLFDKMGIRDSVSYNSMIDGYVKSGN--------------------------------- 200
           R++F  + + D+V + SMI GY ++G                                  
Sbjct: 86  RRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTAL 145

Query: 201 --IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQF-AWQIFEKM------PERDLI 251
             +E AR L   MP    + ++WN+V++GYAQ +SG++   + +++ M      P R   
Sbjct: 146 GRLEDARTLLHRMPA-PSSTVAWNAVISGYAQ-QSGIEHEVFGLYKDMRCWGLWPTRS-- 201

Query: 252 SWNSMLHGCVKC-----GKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306
           ++ SML           G+   A A+   +   +V   +++I+ YAK G +  A  +FD 
Sbjct: 202 TFASMLSAAANATAFIEGRQVHAAAVRHGLDA-NVFVGSSLINLYAKCGCIGDAILVFDC 260

Query: 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ-----L 361
             +++VV  NAM+ G VRN Y ++A+++F  M+  L L  D+ + V VL A A      L
Sbjct: 261 SGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMK-RLGLEADEFTYVSVLGACAHLDSHCL 319

Query: 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMI 421
           G   + V I   ++   F  N     A +DM+SK G+I++A  +F  I       WNA++
Sbjct: 320 GRQVQCVTIKNCMDASLFVAN-----ATLDMHSKFGAIDDAKTLFNLITYKDTVSWNALL 374

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
            GL  +   E A  +L  M    + PD+++F  ++NAC++    + G       ++IH L
Sbjct: 375 VGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRATETG-------KQIHCL 427

Query: 482 EPELQHYGC--------MVDILGRAGHIEAARNLIEDM---PMEPNDVIWRTLLSACRNY 530
              ++H  C        ++D   + G +E+ R ++  +    + P +V+   L+   R  
Sbjct: 428 --AMKHSICSNHAVGSSLIDFYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQNNRED 485

Query: 531 ENLNVGEPVAK 541
           E +++ + V +
Sbjct: 486 EAIDLFQQVLR 496



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 125/495 (25%), Positives = 213/495 (43%), Gaps = 61/495 (12%)

Query: 83  DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142
           D   W ++I  Y      +EA+ +F  M   G S D+ +   V+ A + LG +E+     
Sbjct: 96  DTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTALGRLEDA---R 152

Query: 143 GLLRKVAFGSDLFLQNCLISLY----------------VRCGYLEFARQLFDKM------ 180
            LL ++   S     N +IS Y                +RC  L   R  F  M      
Sbjct: 153 TLLHRMPAPSSTVAWNAVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAAN 212

Query: 181 -------------GIRDSVSYN-----SMIDGYVKSGNIESARELFDSMPIRERNLISWN 222
                         +R  +  N     S+I+ Y K G I  A  +FD     E+N++ WN
Sbjct: 213 ATAFIEGRQVHAAAVRHGLDANVFVGSSLINLYAKCGCIGDAILVFDCSG--EKNVVMWN 270

Query: 223 SVLNGYAQLKSGLQFAWQIFEKMP----ERDLISWNSMLHGCVKC-----GKMDDAQALF 273
           ++LNG  + +  ++ A Q+F  M     E D  ++ S+L  C        G+      + 
Sbjct: 271 AMLNGLVRNEYQVE-AIQMFLYMKRLGLEADEFTYVSVLGACAHLDSHCLGRQVQCVTIK 329

Query: 274 DKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE 333
           + M     V+ A + D ++K G +D A+ LF+ +  +D V+ NA++ G   N    +A+ 
Sbjct: 330 NCMDASLFVANATL-DMHSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHNEEDEEAIH 388

Query: 334 IFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMY 393
           +   M  +  + PD+ S   V++A + +   + G  IH    K     N   G +LID Y
Sbjct: 389 MLKGMNLD-GVTPDEVSFATVINACSNIRATETGKQIHCLAMKHSICSNHAVGSSLIDFY 447

Query: 394 SKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
           SK G +E+  KV  Q++  S+   N +I GL  +   + A DL  ++ R  ++P   TF+
Sbjct: 448 SKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFS 507

Query: 454 GLLNACAH--AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM 511
            +L+ C    + ++ + + C+ L      L  +      +V    +A   E A  L+ +M
Sbjct: 508 SILSGCTGLLSSIIGKQVHCYTLKSGF--LNDDTSVGVSLVGTYLKARMPEDANKLLIEM 565

Query: 512 PMEPNDVIWRTLLSA 526
           P   N V W  ++S 
Sbjct: 566 PDHKNLVEWTAIVSG 580



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 129/286 (45%), Gaps = 43/286 (15%)

Query: 32  QIHARMITTGFIKN-THLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAI 90
           Q+H   + +GF+ + T +   LV ++  +    + E A  +  +     + K+   W AI
Sbjct: 524 QVHCYTLKSGFLNDDTSVGVSLVGTYLKAR---MPEDANKLLIE---MPDHKNLVEWTAI 577

Query: 91  IKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAF 150
           +  Y+      ++L+ F  M    V  D+ + + +LKACS +  + +G +IHGL+ K  F
Sbjct: 578 VSGYAQNGYSYQSLLSFWRMRSYDVHPDEVTFASILKACSEMTALSDGKEIHGLIIKSGF 637

Query: 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVS-YNSMIDGYVKSGNIESARELFD 209
           GS     + +I +Y +CG +  + + F ++  +  ++ +NSMI G+ K+G  + A  LF 
Sbjct: 638 GSYKTATSAIIDMYSKCGDIISSFEAFKELKSKQDITLWNSMILGFAKNGYADEALLLFQ 697

Query: 210 SMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDA 269
            M                 +Q+KS               D +++  +L  C   G + + 
Sbjct: 698 KMQ---------------DSQIKS---------------DEVTFLGVLIACAHAGLISEG 727

Query: 270 QALFDKMPK-----RDVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
           +  FD M K       V  +A  ID   + G +  A+ + +E+P R
Sbjct: 728 RHYFDSMSKVYGIMPRVDHYACFIDLLGRGGHLQEAQEVINELPFR 773



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 28/177 (15%)

Query: 20  LLRKCK---TLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+ C     L+D  +IH  +I +GF      T+ ++  +  S C         I   + 
Sbjct: 612 ILKACSEMTALSDGKEIHGLIIKSGFGSYKTATSAIIDMY--SKCGD-------IISSFE 662

Query: 77  AFRE---KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLG 133
           AF+E   K+D  LWN++I  ++      EAL++F  M D+ +  D+ +   VL AC+  G
Sbjct: 663 AFKELKSKQDITLWNSMILGFAKNGYADEALLLFQKMQDSQIKSDEVTFLGVLIACAHAG 722

Query: 134 LIEEGL-------QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183
           LI EG        +++G++ +V    D +   C I L  R G+L+ A+++ +++  R
Sbjct: 723 LISEGRHYFDSMSKVYGIMPRV----DHYA--CFIDLLGRGGHLQEAQEVINELPFR 773


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 155/375 (41%), Positives = 231/375 (61%), Gaps = 4/375 (1%)

Query: 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
           DL   NSM+   VKCG +  A+ +FD+M +RDVVSW  +I  YAK G ++ A  LFD++P
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLP 236

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
            +D+VA  AM+ GY +NG   +ALE F  MQ ++ +  D+ +L  V+SA AQLG +    
Sbjct: 237 SKDMVAWTAMVTGYAQNGRPKEALEYFQKMQ-DVGMETDEVTLAGVISACAQLGAVKHAN 295

Query: 369 AIHRYLEKDQFSLNGKH--GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAI 426
            I    E+  F  +G    G ALIDMYSKCGS + A KVFE +++ +V  +++MI G A+
Sbjct: 296 WIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAM 355

Query: 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ 486
           HG    A  L  +M +  I P+ +TF G+L+AC+HAGLV++G   F  M +   + P   
Sbjct: 356 HGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPD 415

Query: 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546
           HY CMVD+LGRAG +E A +L++ MPMEPN  +W  LL ACR + N ++ +  A  L  +
Sbjct: 416 HYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKL 475

Query: 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELE-GVVHEFFVRDK 605
           + +   +Y+LLSN++A  G W +  ++R +++E+  KK PGCSW E + G +H+FF  D 
Sbjct: 476 EPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDT 535

Query: 606 SRLQVRDIYYMLDNM 620
           +  +  +I   L  +
Sbjct: 536 THPRSSEIRQALKQL 550



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 132/464 (28%), Positives = 240/464 (51%), Gaps = 29/464 (6%)

Query: 20  LLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79
           +L  C   + + Q+HA +I  G  + +++ TKL+   +     P+  +   +F + +   
Sbjct: 48  ILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVD-VPMGSYPLLVFGQVN--- 103

Query: 80  EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL 139
              +PFLW A+I+ Y+      E+   +  M  +GV    F+ S + KAC     ++ G 
Sbjct: 104 -YPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGK 162

Query: 140 QIHGLLRKVA-FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKS 198
           Q+H     +  F SDL++ N +I LYV+CG+L  AR++FD+M  RD VS+  +I  Y K 
Sbjct: 163 QVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKY 222

Query: 199 GNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMP----ERDLISWN 254
           G++ESA  LFD +P   +++++W +++ GYAQ     + A + F+KM     E D ++  
Sbjct: 223 GDMESASGLFDDLP--SKDMVAWTAMVTGYAQ-NGRPKEALEYFQKMQDVGMETDEVTLA 279

Query: 255 SMLHGCVKCGKMDDAQALFDKM------PKRDVVSWANMIDGYAKLGRVDIARRLFDEMP 308
            ++  C + G +  A  + D        P  +VV  + +ID Y+K G  D A ++F+ M 
Sbjct: 280 GVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMK 339

Query: 309 KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV 368
           +R+V + ++M+ GY  +G +  AL++F +M  +  + P+  + + +LSA +  G +++G 
Sbjct: 340 ERNVFSYSSMILGYAMHGRAHSALQLFHDM-LKTEIRPNKVTFIGILSACSHAGLVEQGR 398

Query: 369 AIHRYLEK-DQFSLNGKHGVALIDMYSKCGSIENA---IKVFEQIEDGSVDHWNAMINGL 424
            +   +EK    + +  H   ++D+  + G +E A   +K      +G V  W A++   
Sbjct: 399 QLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGV--WGALLGAC 456

Query: 425 AIHGLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGLVKE 467
            IHG  ++A   +   E   +EP+ I  +  L N  A AG  +E
Sbjct: 457 RIHGNPDIA--QIAANELFKLEPNGIGNYILLSNIYASAGRWEE 498


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 195/619 (31%), Positives = 320/619 (51%), Gaps = 71/619 (11%)

Query: 15  QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFK 74
           +S + LL KCK++  + QIH+  I  G   +     +++A F  +  +    +A  +F  
Sbjct: 8   ESPISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFRNRVIA-FCCAHESGNMNYAHQVFDT 66

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL 134
                     F+WN +IK YS    P+  + M+ LML + +  D+F+    LK  +R   
Sbjct: 67  I----PHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMA 122

Query: 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDG 194
           ++ G ++     K  F S+LF+Q   I ++  CG ++ A ++FD MG             
Sbjct: 123 LQHGKELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFD-MG------------- 168

Query: 195 YVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWN 254
                         D+  +     ++WN +L+GY ++K   QF      K+ +  L+   
Sbjct: 169 --------------DACEV-----VTWNIMLSGYNRVK---QF------KISKMLLV--- 197

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314
             L  C K   ++  + +F K     +V        +A  G +D A+ +FD M  RDVV+
Sbjct: 198 --LSACSKLKDLEWGKHIF-KYINGGIVEHM-----FAACGEMDEAQGVFDNMKTRDVVS 249

Query: 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374
             AM+ GY+R  + + AL +F  MQ    + PD+ ++V +L A A LG ++ G  +   +
Sbjct: 250 WTAMIDGYLRMNHFIGALALFREMQMS-NVKPDEFTMVSILIACALLGALELGEWVKTCI 308

Query: 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434
           +K+    +   G AL+DMY KCG++  A KVF+++       W  MI GLAI+G GE A 
Sbjct: 309 DKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEAL 368

Query: 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494
            +   M   S+ PD+IT+ G+L AC    +V +G   F  M   H ++P + HYGCMVD+
Sbjct: 369 AMFSNMIEASVTPDEITYIGVLCAC----MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDL 424

Query: 495 LGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554
           LG  G +E A  +I +MP++PN ++W + L ACR ++N+ + +  AK ++ ++  N + Y
Sbjct: 425 LGCVGCLEEALEVIVNMPVKPNSIVWGSPLGACRVHKNVQLADMAAKQILELEPENGAVY 484

Query: 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIY 614
           VLL N++A    W +  +VR +M ER +KK PGCS +EL G V+EF   D+S  Q ++IY
Sbjct: 485 VLLCNIYAASKKWENLCQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIY 544

Query: 615 YMLDNM--------WTPDS 625
             L+NM        ++PD+
Sbjct: 545 AKLENMMQGLIKAGYSPDT 563


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 166/441 (37%), Positives = 256/441 (58%), Gaps = 9/441 (2%)

Query: 188 YNSMIDGYVKS---GNIESARELFDSMPIRE--RNLISWNSVLNGYAQLKS---GLQFAW 239
           +N+ I G+ ++   G++ S+  LF  M +     N  ++  +  G +   +   G QF  
Sbjct: 57  FNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHG 116

Query: 240 QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDI 299
            + +   E D+   NS++     CG+++DA+ +FD+  + DVVSW +MIDG  + G +  
Sbjct: 117 MVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILE 176

Query: 300 ARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359
           A  LF +M +R+ ++ N M+ GY +NG   +AL +F  MQ  L   P+ A LV VLSA +
Sbjct: 177 ALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQM-LDQEPNSAILVSVLSACS 235

Query: 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419
           QLG +D G  +H Y+ K    ++     ALIDMY+KCGSI+ A++ F       V  + A
Sbjct: 236 QLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTA 295

Query: 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479
            I+GLA++G  E A  L  +M+   I PD +++  +L AC+HAG V++G   F  M  +H
Sbjct: 296 AISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVH 355

Query: 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPV 539
            + PEL HY CMVD+LGRAG +E A   +  MP++P++VIW  LL ACR Y N  +G+ V
Sbjct: 356 GIRPELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRV 415

Query: 540 AKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHE 599
              L+  D ++   Y+LLSN++A      DA +VR  M+ R + ++PGCS IE+ G VHE
Sbjct: 416 GSLLVESDQNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVHE 475

Query: 600 FFVRDKSRLQVRDIYYMLDNM 620
           FF  D+S  +  +IY M + +
Sbjct: 476 FFSGDRSHEKTEEIYLMWEEI 496



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 137/458 (29%), Positives = 215/458 (46%), Gaps = 62/458 (13%)

Query: 27  LNDVNQIHARMITTGFIKNTHLTTKL--VASFSSSPCTPLTEFARYIFFKYHAFREKKDP 84
           +    + H ++I  G    TH    L  + SFS+   +   ++A  +       R    P
Sbjct: 1   MKQFKEAHTQLIINGL---THPPPSLRPIISFSALDPSGDIDYALLLLL-----RTSTPP 52

Query: 85  --FLWNAIIKTYSHGLDPKEALVMFCLMLDNGV---SVDKFSASLVLKACSRLGLIEEGL 139
             FL+N  I+ +S    P   L    L +  GV   + + F+ + + + CS     + G 
Sbjct: 53  TVFLFNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGR 112

Query: 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSG 199
           Q HG++ K +F  D+F++N +I  Y  CG L  AR +FD+    D VS+NSMIDG +++G
Sbjct: 113 QFHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNG 172

Query: 200 NIESARELFDSMPIRERNLISWNSVLNGYA---QLKSGLQF--AWQIFEKMPERDLISWN 254
           NI  A  LF  M   ERN ISWN +++GYA   Q K  L      Q+ ++ P   ++   
Sbjct: 173 NILEALSLFSKMT--ERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILV-- 228

Query: 255 SMLHGCVKCGKMDDAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMPKR 310
           S+L  C + G +D    +   + K+    D +  A +ID YAK G +D+A + F    KR
Sbjct: 229 SVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKR 288

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370
           DV A  A + G   NG S +AL++F+ M+ E  + PD  S + VL A +  G ++KG   
Sbjct: 289 DVSAYTAAISGLAMNGCSEEALQLFEQMKGE-GISPDGVSYIAVLCACSHAGWVEKG--F 345

Query: 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430
           H +      S++  HG+                          +DH+  M++ L   GL 
Sbjct: 346 HYFA-----SMSDVHGI-----------------------RPELDHYACMVDLLGRAGLL 377

Query: 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468
           E A   +  M    I+PD++ +  LL AC   G  + G
Sbjct: 378 EEAEKFVASM---PIKPDNVIWGALLGACRVYGNAEMG 412



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 108/237 (45%), Gaps = 21/237 (8%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMF--CLMLDNGVSVDKFSASL--VLKACSRLGLIE 136
           +++   WN +I  Y+    PKEAL +F    MLD     +  SA L  VL ACS+LG ++
Sbjct: 186 ERNDISWNMMISGYAQNGQPKEALALFREMQMLDQ----EPNSAILVSVLSACSQLGALD 241

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
            G  +H  + K     D  L   LI +Y +CG ++ A Q F     RD  +Y + I G  
Sbjct: 242 HGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLA 301

Query: 197 KSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKM-------PE 247
            +G  E A +LF+ M       + +S+ +VL   +     ++  +  F  M       PE
Sbjct: 302 MNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSH-AGWVEKGFHYFASMSDVHGIRPE 360

Query: 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMP-KRDVVSWANMIDGYAKLGRVDIARRL 303
            D   +  M+    + G +++A+     MP K D V W  ++      G  ++ +R+
Sbjct: 361 LD--HYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRV 415


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 201/601 (33%), Positives = 310/601 (51%), Gaps = 56/601 (9%)

Query: 32   QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
            Q+H+ +I   F  N  +   LV  ++   C  L E AR  F     F   +D   WNAII
Sbjct: 471  QLHSFIIKHNFEYNLFVENTLVDMYAK--CGALEE-ARQQF----EFIRNRDNVSWNAII 523

Query: 92   KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFG 151
              Y    D  EA  MF  M+ +G++ D+ S + +L  C+ L  +E+G Q+H  L K    
Sbjct: 524  VGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSG-- 581

Query: 152  SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSM 211
                LQ CL                          + +S+ID YVK G IE+AR +F  M
Sbjct: 582  ----LQTCL-------------------------YAGSSLIDMYVKCGAIEAARYVFSCM 612

Query: 212  PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----ISWNSMLHGCVKCGKMD 267
            P   R+++S N+++ GYAQ  + L  A  +F++M    L    I++ S+L  C    K++
Sbjct: 613  P--SRSVVSMNAIIAGYAQ--NDLVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLN 668

Query: 268  DAQALFDKMPKRDVVS-----WANMIDGYAKLGRVDIARRLFDEM--PKRDVVACNAMMG 320
              + +   + KR ++        +++  Y    R   A  LF E   PK  ++   A++ 
Sbjct: 669  LGRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTIL-WTAIIS 727

Query: 321  GYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380
            G+ +NG S +AL+++  M       PD A+   VL A + L  +  G  IH  +      
Sbjct: 728  GHTQNGCSEEALQLYQEMH-RNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLD 786

Query: 381  LNGKHGVALIDMYSKCGSIENAIKVFEQI-EDGSVDHWNAMINGLAIHGLGELAFDLLME 439
             +   G A++DMY+KCG ++++++VFE++     V  WN+MI G A +G  E A  +  E
Sbjct: 787  SDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDE 846

Query: 440  MERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG 499
            M+   I PDD+TF G+L AC+HAG V EG   F++M   +K+ P L H  CM+D+LGR G
Sbjct: 847  MKHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMVHSYKIVPRLDHCACMIDLLGRWG 906

Query: 500  HIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559
             ++ A   I+ +  EPN +IW TLL ACR + +   G   A+ LI ++  NSS YVLLSN
Sbjct: 907  FLKEAEEFIDKLNFEPNAMIWATLLGACRIHGDDIRGRRAAEKLIELEPENSSPYVLLSN 966

Query: 560  MFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDN 619
            ++A  G W++   VR  M+E+ L+KLPGCSWI +    + F   DK      +I+ +L +
Sbjct: 967  IYAASGNWDEVNSVRRAMREKGLRKLPGCSWIVVGQKTNLFVAGDKFHPSAGEIHALLKD 1026

Query: 620  M 620
            +
Sbjct: 1027 L 1027



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 161/584 (27%), Positives = 282/584 (48%), Gaps = 90/584 (15%)

Query: 33  IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIK 92
           IHA+ +  GF     L + +V  ++   C  + EFA   F +     EK+D   WN+++ 
Sbjct: 103 IHAQTLKFGFGSKGRLGSAIVDLYAK--CGNV-EFAAKAFNQL----EKRDILAWNSVLS 155

Query: 93  TYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGS 152
            YS     ++ +  F  + + GVS ++F+ ++VL +C+RL  I+ G Q+H  + K+ F  
Sbjct: 156 MYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEF 215

Query: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212
           + F +  LI +Y +CG L  AR++FD +   D+VS+ +MI GYV+ G  E A ++F+ M 
Sbjct: 216 NSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQ 275

Query: 213 IRE--RNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQ 270
                 + +++ +V+     L   L  A  +F +MP  ++++WN M+ G VK G   +A 
Sbjct: 276 KLGLVPDQVAFVTVITACVGLGR-LDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAI 334

Query: 271 ALFDKMPKRDVVSW---------------------------------------ANMIDGY 291
             F  M K  V S                                        +++I+ Y
Sbjct: 335 DFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMY 394

Query: 292 AKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQ-CELYLHPDDAS 350
           AK  +++ A+++FD + +R++V  NAM+GGY +NGY+ K +++F  M+ C  +  PD+ +
Sbjct: 395 AKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFW--PDEFT 452

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE 410
              +LSA A L  ++ G  +H ++ K  F  N      L+DMY+KCG++E A + FE I 
Sbjct: 453 YTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIR 512

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG-- 468
           +     WNA+I G       + AF++   M    I PD+++   +L+ CA+   +++G  
Sbjct: 513 NRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQ 572

Query: 469 LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP---------------- 512
           + CF +      L+  L     ++D+  + G IEAAR +   MP                
Sbjct: 573 VHCFLVKS---GLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQ 629

Query: 513 -----------------MEPNDVIWRTLLSACRNYENLNVGEPV 539
                            + P+++ + +LL AC     LN+G  +
Sbjct: 630 NDLVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQI 673



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 148/524 (28%), Positives = 245/524 (46%), Gaps = 91/524 (17%)

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           IH    K  FGS   L + ++ LY +CG +EFA + F+++  RD +++NS++  Y + G+
Sbjct: 103 IHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGS 162

Query: 201 IESARELFDSMPI--RERNLISWNSVLNGYAQL--------------KSGLQF------- 237
           +E     F S+       N  ++  VL+  A+L              K G +F       
Sbjct: 163 LEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGS 222

Query: 238 -------------AWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RD 280
                        A +IF+ + + D +SW +M+ G V+ G  ++A  +F+ M K     D
Sbjct: 223 LIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPD 282

Query: 281 VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQC 340
            V++  +I     LGR+D A  LF +MP  +VVA N M+ G+V+ G  ++A++ F NM  
Sbjct: 283 QVAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMW- 341

Query: 341 ELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE 400
           +  +    ++L  VLSAIA L  ++ G+ +H    K   + N   G +LI+MY+KC  +E
Sbjct: 342 KTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKME 401

Query: 401 NAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460
            A KVF+ +++ ++  WNAM+ G A +G       L  EM      PD+ T+T +L+ACA
Sbjct: 402 AAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACA 461

Query: 461 HAGLVKEGLLCFELMRRIHK------LEPELQHYGCMVDILGRAGHIEAAR--------- 505
                   L C E+ R++H        E  L     +VD+  + G +E AR         
Sbjct: 462 -------CLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNR 514

Query: 506 ----------------------NLIEDMPME---PNDVIWRTLLSACRNYENLNVGEPVA 540
                                 N+   M ++   P++V   ++LS C N + L  GE V 
Sbjct: 515 DNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVH 574

Query: 541 KHLI--GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
             L+  G+ +   +   L+ +M+   G    AR V S M  R++
Sbjct: 575 CFLVKSGLQTCLYAGSSLI-DMYVKCGAIEAARYVFSCMPSRSV 617



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 141/523 (26%), Positives = 256/523 (48%), Gaps = 52/523 (9%)

Query: 13  STQSTL-LLLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFA 68
           ST+STL  +L    +L  +N    +HA+ I  G   N ++ + L+  ++   C  + E A
Sbjct: 347 STRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAK--CEKM-EAA 403

Query: 69  RYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA 128
           + +F       ++++  LWNA++  Y+      + + +F  M   G   D+F+ + +L A
Sbjct: 404 KKVFDAL----DERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSA 459

Query: 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSY 188
           C+ L  +E G Q+H  + K  F  +LF++N L+ +Y +CG LE ARQ F+ +  RD+VS+
Sbjct: 460 CACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSW 519

Query: 189 NSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKS---GLQFAWQIFE 243
           N++I GYV+  + + A  +F  M +     + +S  S+L+G A L++   G Q    + +
Sbjct: 520 NAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVK 579

Query: 244 KMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRL 303
              +  L + +S++   VKCG ++ A+ +F  MP R VVS   +I GYA           
Sbjct: 580 SGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYA----------- 628

Query: 304 FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363
                + D+V                +A+++F  MQ E  L+P + +   +L A      
Sbjct: 629 -----QNDLV----------------EAIDLFQEMQNE-GLNPSEITFASLLDACTGPYK 666

Query: 364 IDKGVAIHRYLEKDQFSLNGKH-GVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMI 421
           ++ G  IH  ++K     +G   GV+L+ MY       +A  +F + +   S   W A+I
Sbjct: 667 LNLGRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAII 726

Query: 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481
           +G   +G  E A  L  EM R +  PD  TF  +L AC+    + +G +   L+  +   
Sbjct: 727 SGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLD 786

Query: 482 EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524
             EL     +VD+  + G ++++  + E+M  + + + W +++
Sbjct: 787 SDELTG-SAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMI 828



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 152/535 (28%), Positives = 244/535 (45%), Gaps = 96/535 (17%)

Query: 19  LLLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKY 75
           ++L  C  L D++   Q+H  +I  GF  N+     L+  +S   C  L + AR IF   
Sbjct: 187 IVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSK--CGSLVD-ARKIFDAV 243

Query: 76  HAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135
                  D   W A+I  Y     P+EAL +F  M   G+  D+ +   V+ AC  LG +
Sbjct: 244 ----VDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRL 299

Query: 136 EEGLQIHGLLRKVAFGSDLFLQ---------NCLISLYVRCG----YLEFARQLFDKMGI 182
           ++               DLF+Q         N +IS +V+ G     ++F + ++ K G+
Sbjct: 300 DDA-------------CDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMW-KTGV 345

Query: 183 RDSVSY------------------------------------NSMIDGYVKSGNIESARE 206
           + + S                                     +S+I+ Y K   +E+A++
Sbjct: 346 KSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKK 405

Query: 207 LFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE----RDLISWNSMLHGCVK 262
           +FD++   ERNL+ WN++L GYAQ     +   ++F +M       D  ++ S+L  C  
Sbjct: 406 VFDALD--ERNLVLWNAMLGGYAQNGYASK-VMKLFSEMRGCGFWPDEFTYTSILSACAC 462

Query: 263 CGKMDDAQALFDKMPKRD----VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAM 318
              ++  + L   + K +    +     ++D YAK G ++ AR+ F+ +  RD V+ NA+
Sbjct: 463 LECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAI 522

Query: 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ 378
           + GYV+     +A  +F  M  +  + PD+ SL  +LS  A L  +++G  +H +L K  
Sbjct: 523 IVGYVQEEDEDEAFNMFRRMILD-GIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSG 581

Query: 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438
                  G +LIDMY KCG+IE A  VF  +   SV   NA+I G A + L E A DL  
Sbjct: 582 LQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDLVE-AIDLFQ 640

Query: 439 EMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493
           EM+   + P +ITF  LL+AC        G     L R+IH L   +Q  G + D
Sbjct: 641 EMQNEGLNPSEITFASLLDACT-------GPYKLNLGRQIHCL---IQKRGLLYD 685



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 104/443 (23%), Positives = 192/443 (43%), Gaps = 67/443 (15%)

Query: 25  KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDP 84
           + L    Q+H  ++ +G     +  + L+  +    C  + E ARY+F    +    +  
Sbjct: 565 QALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVK--CGAI-EAARYVF----SCMPSRSV 617

Query: 85  FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGL 144
              NAII  Y+   D  EA+ +F  M + G++  + + + +L AC+    +  G QIH L
Sbjct: 618 VSMNAIIAGYAQN-DLVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCL 676

Query: 145 LRKVAFGSDL-FLQNCLISLYVRCGYLEFARQLFDKMGI-RDSVSYNSMIDGYVKSGNIE 202
           ++K     D  FL   L+ +Y+       A  LF +    + ++ + ++I G+ ++G  E
Sbjct: 677 IQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSE 736

Query: 203 SARELFDSMPIRERN-----LISWNSVLNG---YAQLKSGLQFAWQIFEKMPERDLISWN 254
            A +L+  M    RN       ++ SVL      A L  G      IF    + D ++ +
Sbjct: 737 EALQLYQEM---HRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGS 793

Query: 255 SMLHGCVKCGKMDDAQALFDKM-PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV 313
           +++    KCG M  +  +F++M  K DV+SW +MI G+AK G  + A ++FDEM    + 
Sbjct: 794 AVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRI- 852

Query: 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG-----V 368
                                           PDD + + VL+A +  G + +G     +
Sbjct: 853 -------------------------------RPDDVTFLGVLTACSHAGRVSEGREIFDI 881

Query: 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE-DGSVDHWNAMINGLAIH 427
            +H Y    +      H   +ID+  + G ++ A +  +++  + +   W  ++    IH
Sbjct: 882 MVHSY----KIVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWATLLGACRIH 937

Query: 428 G---LGELAFDLLMEMERLSIEP 447
           G    G  A + L+E+E  +  P
Sbjct: 938 GDDIRGRRAAEKLIELEPENSSP 960



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 107/235 (45%), Gaps = 23/235 (9%)

Query: 358 IAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417
           +AQ     K   IH    K  F   G+ G A++D+Y+KCG++E A K F Q+E   +  W
Sbjct: 93  LAQASRTSK--TIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAW 150

Query: 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477
           N++++  +  G  E        ++   + P+  T+  +L++CA        L+  +L ++
Sbjct: 151 NSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCAR-------LVDIDLGKQ 203

Query: 478 IH----KLEPELQHY--GCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYE 531
           +H    K+  E   +  G ++D+  + G +  AR +  D  ++P+ V W  +++    Y 
Sbjct: 204 VHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIF-DAVVDPDTVSWTAMIAG---YV 259

Query: 532 NLNVGEPVAKHLIGMDS----SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582
            + + E   K    M       +  ++V +     GLG  +DA  +   M   N+
Sbjct: 260 QVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDACDLFVQMPNTNV 314



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 75/179 (41%), Gaps = 12/179 (6%)

Query: 6   NYNQPCNSTQSTLLLLRKCK---TLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCT 62
           N  +P  +T +++L  R C    +L D   IH+ +   G   +    + +V  ++   C 
Sbjct: 748 NNARPDQATFASVL--RACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAK--CG 803

Query: 63  PLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSA 122
            +    +     +     K D   WN++I  ++     + AL +F  M    +  D  + 
Sbjct: 804 DMKSSVQV----FEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTF 859

Query: 123 SLVLKACSRLGLIEEGLQIHGLL-RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180
             VL ACS  G + EG +I  ++         L    C+I L  R G+L+ A +  DK+
Sbjct: 860 LGVLTACSHAGRVSEGREIFDIMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKL 918


>gi|147860852|emb|CAN83162.1| hypothetical protein VITISV_022557 [Vitis vinifera]
          Length = 562

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 172/417 (41%), Positives = 246/417 (58%), Gaps = 13/417 (3%)

Query: 211 MPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVK----CGKM 266
           M I+ER+    N +L    +  S  + A+Q   K+ +    ++ S++   V     C  +
Sbjct: 52  MVIQERDHQKLNCILEA-CKFSSDFRTAFQSHAKIIKFGYGTYPSLITSLVSTYAHCDCL 110

Query: 267 DDAQALFDKMP--KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVR 324
           D A  L D+MP    D+++   +I    K+G  D A+R+F +M +RDVV  N+M+GG VR
Sbjct: 111 DLAHQLLDEMPYWGFDLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVR 170

Query: 325 NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK 384
           N    +AL  F  M     + PD  +   V++  A+LG       +H  + + +  LN  
Sbjct: 171 NERFEEALRFFREM-LNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFI 229

Query: 385 HGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS 444
              ALID+YSKCG I  A KVF  I+   V  WN+MINGLAIHGL   A  +  +ME  S
Sbjct: 230 LSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMES 289

Query: 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504
           + PD ITF G+L AC+H GLV++G   F+LMRR + ++P+L+HYG MVD+LGRAG +E A
Sbjct: 290 VSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLLGRAGLVEEA 349

Query: 505 RNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE-PVAKHLIGMDSSNSSSYVLLSNMFAG 563
             +I+ MPMEP+ VIWR LLSACRN++N  +GE  +AK    +   NS  Y+LLSNM+  
Sbjct: 350 YAMIKAMPMEPDIVIWRALLSACRNFKNPELGEVAIAK----ISHLNSGDYILLSNMYCS 405

Query: 564 LGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNM 620
           L  W+ A RVR MMK   ++K  G SW+EL GV+H+F   D+S  +   IY +L+ +
Sbjct: 406 LEKWDSAERVREMMKRDGVRKNRGRSWVELGGVIHQFKAGDRSHPETGAIYKVLEGL 462



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 168/344 (48%), Gaps = 45/344 (13%)

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI-- 182
           +L+AC          Q H  + K  +G+   L   L+S Y  C  L+ A QL D+M    
Sbjct: 65  ILEACKFSSDFRTAFQSHAKIIKFGYGTYPSLITSLVSTYAHCDCLDLAHQLLDEMPYWG 124

Query: 183 RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYA---QLKSGLQFAW 239
            D ++ N +I   +K G  + A+ +F  M    R++++WNS++ G     + +  L+F  
Sbjct: 125 FDLITANLIIASLMKVGEFDFAKRVFRKML--RRDVVTWNSMIGGCVRNERFEEALRFFR 182

Query: 240 QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDV----VSWANMIDGYAKLG 295
           ++     E D  ++ S+++GC + G    A+ +   M ++ +    +  + +ID Y+K G
Sbjct: 183 EMLNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCG 242

Query: 296 RVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355
           R++ A+++F+ +   DV   N+M+ G   +G ++ A+ +F  M+ E  + PD  + + +L
Sbjct: 243 RINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEME-SVSPDSITFIGIL 301

Query: 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415
           +A +  G +++G    RY     F L  +H       YS          +  Q+E     
Sbjct: 302 TACSHCGLVEQG---RRY-----FDLMRRH-------YS----------IQPQLE----- 331

Query: 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459
           H+ AM++ L   GL E A+ ++  M    +EPD + +  LL+AC
Sbjct: 332 HYGAMVDLLGRAGLVEEAYAMIKAM---PMEPDIVIWRALLSAC 372



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 149/383 (38%), Gaps = 88/383 (22%)

Query: 20  LLRKCKTLNDVN---QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLT-----EFARYI 71
           +L  CK  +D     Q HA++I  G+     L T LV++++   C  L      E   + 
Sbjct: 65  ILEACKFSSDFRTAFQSHAKIIKFGYGTYPSLITSLVSTYAHCDCLDLAHQLLDEMPYWG 124

Query: 72  F-------------------FKYHAFRE--KKDPFLWNAIIKTYSHGLDPKEALVMFCLM 110
           F                   F    FR+  ++D   WN++I         +EAL  F  M
Sbjct: 125 FDLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREM 184

Query: 111 LDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYL 170
           L++ V  D F+ + V+  C+RLG       +HGL+ +     +  L + LI LY +CG +
Sbjct: 185 LNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRI 244

Query: 171 EFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQ 230
             A+++F+ +   D   +NSMI+G    G    A  +F  M +                 
Sbjct: 245 NTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMES--------------- 289

Query: 231 LKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVS-----WA 285
                             D I++  +L  C  CG ++  +  FD M +   +      + 
Sbjct: 290 ---------------VSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYG 334

Query: 286 NMIDGYAKLGRVDIARRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYL 344
            M+D   + G V+ A  +   MP + D+V   A++                    C  + 
Sbjct: 335 AMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLSA------------------CRNFK 376

Query: 345 HPDDASLVIVLSAIAQLGHIDKG 367
           +P+   +     AIA++ H++ G
Sbjct: 377 NPELGEV-----AIAKISHLNSG 394


>gi|357144887|ref|XP_003573448.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Brachypodium distachyon]
          Length = 530

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 176/507 (34%), Positives = 283/507 (55%), Gaps = 19/507 (3%)

Query: 100 PKEALVMFCLMLDNGVSVDK---FSASLVLKACSRL-GLIEEGLQIHGLLRKVAFGSDLF 155
           P+ A+ ++     +  +  +   F+ + VLK+ SRL          H  L ++   +  +
Sbjct: 27  PRRAIALYVSSFRSDAAAHRSCPFALAAVLKSVSRLPAHALAAASFHAHLLRLGLLAHPY 86

Query: 156 LQNCLISLYVRCGYLEFARQLFDKM---GIRDS----VSYNSMIDGYVKSGNIESARELF 208
               L  LY R  + + AR L D+    G R +    VS NS++   ++SG++ +AR LF
Sbjct: 87  PHAALAHLYSR-DHPDAARSLLDETPPAGARSAHSLLVSRNSLLASLLRSGDLPAARALF 145

Query: 209 DSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKCGKMD 267
           D MP+R+  ++SWNS++ G A  K+G L  A ++F +MPER+  SWN+++ G +  G + 
Sbjct: 146 DQMPVRD--VVSWNSMVAGLA--KAGRLDCAIELFHQMPERNAASWNAVMCGLIAHGHLA 201

Query: 268 DAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMP-KRDVVACNAMMGGYVRNG 326
            A+  F++MP R  VSW  MI GYAK G V  A  LF+ M  + D+ A NAM+  Y +NG
Sbjct: 202 RAREWFEQMPVRSNVSWITMISGYAKAGDVQAAASLFERMENQNDLYAWNAMIACYGQNG 261

Query: 327 YSMKALEIFDNM-QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKH 385
            + +A+ +F  M +  + + P++ +   V+SA +QLG++  G+ +  ++      L+   
Sbjct: 262 CAREAISVFIRMLKPHICVLPNEKTFSSVISACSQLGNLRFGLWVESFMCSLGIELDDHL 321

Query: 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445
             AL+D+Y+K G I+NA K+F  +    V  ++AMI G  ++G    A  L  EM    I
Sbjct: 322 RTALVDLYTKSGRIDNAFKLFRGLRTRDVVSYSAMIVGCGMNGKLSEAIGLFKEMSDAKI 381

Query: 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR 505
            P+ +TF GLL+A  HAGL++E   CF  M   + + P ++HY  MVD+LGR+G ++ A 
Sbjct: 382 VPNAVTFVGLLSAYNHAGLMEEARACFAFMSSKYNIRPSMEHYTIMVDLLGRSGKLDEAF 441

Query: 506 NLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565
            LI  MPM+P+  +W  LL ACR + N+ +GE VA     +    S  Y+LL N++A   
Sbjct: 442 QLIMKMPMQPHASVWGALLLACRLHTNVELGEMVASKCFELAPGESGYYILLGNIYAQAN 501

Query: 566 MWNDARRVRSMMKERNLKKLPGCSWIE 592
            W+  + +R  M E  L K+PG SW++
Sbjct: 502 KWDKVKSLRKTMMEMGLSKMPGSSWVQ 528



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 109/226 (48%), Gaps = 15/226 (6%)

Query: 75  YHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV--DKFSASLVLKACSRL 132
           +     + D + WNA+I  Y      +EA+ +F  ML   + V  ++ + S V+ ACS+L
Sbjct: 238 FERMENQNDLYAWNAMIACYGQNGCAREAISVFIRMLKPHICVLPNEKTFSSVISACSQL 297

Query: 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMI 192
           G +  GL +   +  +    D  L+  L+ LY + G ++ A +LF  +  RD VSY++MI
Sbjct: 298 GNLRFGLWVESFMCSLGIELDDHLRTALVDLYTKSGRIDNAFKLFRGLRTRDVVSYSAMI 357

Query: 193 DGYVKSGNIESARELFDSMPIRE--RNLISWNSVLNGYAQLKSGL-QFAWQIFEKMPERD 249
            G   +G +  A  LF  M   +   N +++  +L+ Y    +GL + A   F  M  + 
Sbjct: 358 VGCGMNGKLSEAIGLFKEMSDAKIVPNAVTFVGLLSAYNH--AGLMEEARACFAFMSSKY 415

Query: 250 LISWNSMLHGCV------KCGKMDDAQALFDKMPKRDVVS-WANMI 288
            I   SM H  +      + GK+D+A  L  KMP +   S W  ++
Sbjct: 416 NIR-PSMEHYTIMVDLLGRSGKLDEAFQLIMKMPMQPHASVWGALL 460


>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g15300-like [Glycine max]
          Length = 555

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 176/499 (35%), Positives = 280/499 (56%), Gaps = 50/499 (10%)

Query: 140 QIHGLLRKVAFGSDL-FLQNCLISLYVR-------CGYLEFARQLFDKMGIRDSVSYNSM 191
           QIH L+    F S++ FL+  +++  +            ++A Q+F ++   D+  +N+ 
Sbjct: 19  QIHALMIVNGFTSNVGFLRKLVLTTAMSMVGPAATTAVTQYAVQMFAQIPQPDTFMWNTY 78

Query: 192 IDGYVKSGNIESARELFDSMPIRE------------------------------------ 215
           I G  +S +   A  L+  M  R                                     
Sbjct: 79  IRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKACTKLFWVNTGSVVHGRVFRLGF 138

Query: 216 -RNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFD 274
             N++  N++L  +A+    L+ A  IF+   + D+++W++++ G  + G +  A+ LFD
Sbjct: 139 GSNVVVRNTLLVFHAKCGD-LKVANDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFD 197

Query: 275 KMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEI 334
           +MPKRD+VSW  MI  Y K G ++ ARRLFDE P +DVV+ NAM+GGYV +  + +ALE+
Sbjct: 198 EMPKRDLVSWNVMITAYTKHGEMECARRLFDEAPMKDVVSWNAMVGGYVLHNLNQEALEL 257

Query: 335 FDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIH-RYLEKDQFSLNGKHGVALIDMY 393
           FD M CE+   PD+ +++ +LSA A LG  D G  +H + +E ++  L+   G AL+DMY
Sbjct: 258 FDEM-CEVGECPDEVTMLSLLSACADLG--DXGEKVHAKIMELNKGKLSTLLGNALVDMY 314

Query: 394 SKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453
           +KCG+I   + VF  I D  +  WN++I GLA HG  E +  L  EM+R  + PD+ITF 
Sbjct: 315 AKCGNIGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVCPDEITFV 374

Query: 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPM 513
           G+L AC+H G V EG   F LM+  +K+EP ++H GC+VD+L RAG ++ A + I  M +
Sbjct: 375 GVLAACSHTGNVDEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLKEAFDFIASMKI 434

Query: 514 EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV 573
           EPN ++WR+LL AC+ + ++ + +   + L+ M    S  YVLLSN++A  G W+ A  V
Sbjct: 435 EPNAIVWRSLLGACKVHGDVELAKRATEQLLRMRVDQSGDYVLLSNVYASHGEWDGAENV 494

Query: 574 RSMMKERNLKKLPGCSWIE 592
           R +M +  + K  G S++E
Sbjct: 495 RKLMDDNGVTKTRGSSFVE 513



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 154/578 (26%), Positives = 272/578 (47%), Gaps = 103/578 (17%)

Query: 27  LNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTP-----LTEFARYIFFKYHAFREK 81
           L  + QIHA MI  GF  N     KLV + + S   P     +T++A  +F +      +
Sbjct: 14  LGTLRQIHALMIVNGFTSNVGFLRKLVLTTAMSMVGPAATTAVTQYAVQMFAQI----PQ 69

Query: 82  KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQI 141
            D F+WN  I+  S   DP  A+ ++  M    V  D F+  LVLKAC++L  +  G  +
Sbjct: 70  PDTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKACTKLFWVNTGSVV 129

Query: 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201
           HG + ++ FGS++ ++N L+  + +CG L+ A  +FD     D V+++++I GY + G++
Sbjct: 130 HGRVFRLGFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSALIAGYAQRGDL 189

Query: 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV 261
             AR+LFD MP  +R+L+SWN ++  Y +    ++ A ++F++ P +D++SWN+M+ G V
Sbjct: 190 SVARKLFDEMP--KRDLVSWNVMITAYTK-HGEMECARRLFDEAPMKDVVSWNAMVGGYV 246

Query: 262 KCGKMDDAQALFDKM--------------------------------------PKRDVVS 283
                 +A  LFD+M                                       K   + 
Sbjct: 247 LHNLNQEALELFDEMCEVGECPDEVTMLSLLSACADLGDXGEKVHAKIMELNKGKLSTLL 306

Query: 284 WANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELY 343
              ++D YAK G +     +F  +  +D+V+ N+++GG   +G++ ++L +F  MQ    
Sbjct: 307 GNALVDMYAKCGNIGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQ-RTK 365

Query: 344 LHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAI 403
           + PD+ + V VL+A +  G++D+G   + YL K+++ +                      
Sbjct: 366 VCPDEITFVGVLAACSHTGNVDEG-NRYFYLMKNKYKI---------------------- 402

Query: 404 KVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAG 463
                  + ++ H   +++ LA  GL + AFD +  M+   IEP+ I +  LL AC   G
Sbjct: 403 -------EPNIRHCGCVVDMLARAGLLKEAFDFIASMK---IEPNAIVWRSLLGACKVHG 452

Query: 464 LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNL---------------- 507
            V+      E + R+     +   Y  + ++    G  + A N+                
Sbjct: 453 DVELAKRATEQLLRMRV--DQSGDYVLLSNVYASHGEWDGAENVRKLMDDNGVTKTRGSS 510

Query: 508 -IEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544
            +E   +EPN V  RTLL AC  Y ++ + + V + L+
Sbjct: 511 FVEAYRIEPNPVNGRTLLGACIVYGDVELAKRVNEELL 548


>gi|242036089|ref|XP_002465439.1| hypothetical protein SORBIDRAFT_01g038860 [Sorghum bicolor]
 gi|241919293|gb|EER92437.1| hypothetical protein SORBIDRAFT_01g038860 [Sorghum bicolor]
          Length = 596

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 185/573 (32%), Positives = 294/573 (51%), Gaps = 26/573 (4%)

Query: 32  QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91
           Q+HAR+I      +  L +KL++ +S    T   + AR +F        +   F WNAI+
Sbjct: 35  QLHARLIALSVTPSNFLASKLISLYSR---TGRLDDARRVFDAI----PRPSVFAWNAIL 87

Query: 92  KTYS-HGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGL---QIHGLLRK 147
              S H  DP  A+  F     +G+S D+ + S +LK+ +  G     L   + H +  +
Sbjct: 88  IALSLHSPDPSAAVRFFAA---SGISPDEITLSALLKSLAESGPRLSALVAAEFHAVAVQ 144

Query: 148 VAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESAREL 207
             FG DLF+ N LI+ Y   G    AR +FDKM  RD VS+NS+I  Y ++G      EL
Sbjct: 145 RGFGDDLFVSNGLITAYANAGDSRSARAVFDKMPQRDVVSWNSLISAYARAGWYRECLEL 204

Query: 208 FDSMP-------IRERNLISWNSVLNGYAQLKS---GLQFAWQIFEKMPERDLISWNSML 257
           F  +        +R  N ++  S+L+  AQLK+   G++      E   + D+  WNS +
Sbjct: 205 FQELASVHGAGGVRP-NSVTVASILHACAQLKAIDYGVRVHRFAAENGLDMDVAVWNSTV 263

Query: 258 HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNA 317
               KCGK+  A+ LF++MPK+D VS++ MI GY   G VD    LF     + +   NA
Sbjct: 264 GFYAKCGKLQYARELFERMPKKDAVSYSAMITGYMNHGHVDKGMELFQRSDAQGISIWNA 323

Query: 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377
           ++ G V+NG   + L + + M     L P+ A+L I++ ++     +      H Y  ++
Sbjct: 324 VIAGLVQNGRQSEVLGLLNEMIGSGIL-PNSATLSIIIPSVHLFSTLLGVKQAHGYAIRN 382

Query: 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLL 437
            +  +     ALID YSK G ++ +++VF+   D S   W ++I+ +A HG    A  L 
Sbjct: 383 NYDQSISVVTALIDAYSKAGFLDGSLRVFKSTGDRSKIVWTSIISAVAAHGEAAEALCLF 442

Query: 438 MEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497
            EM    I PD I FT +L ACA+ G V +    F  M+ +  + P ++ Y CMV    R
Sbjct: 443 NEMANARIRPDTIAFTAVLTACAYTGKVADARKVFNSMQVLFGINPVMEQYACMVSAFSR 502

Query: 498 AGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557
           AG ++ A  L+  MP EPN  +W  LL+    + ++ +G  V   L  ++  N+ +Y+++
Sbjct: 503 AGMLKDALELVNSMPFEPNAKVWGPLLNGAAEFGDVELGRFVFDRLFIIEPKNTGNYIVM 562

Query: 558 SNMFAGLGMWNDARRVRSMMKERNLKKLPGCSW 590
           +N+++  G W +A  +RSMM    L+K+PGCSW
Sbjct: 563 ANLYSNAGKWEEAEIIRSMMWGVGLEKVPGCSW 595



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 156/352 (44%), Gaps = 36/352 (10%)

Query: 113 NGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEF 172
             V  D  +   +++ C+  G +  G Q+H  L  ++     FL + LISLY R G L+ 
Sbjct: 8   TAVPPDPRAYGHLIQLCADSGHLAAGRQLHARLIALSVTPSNFLASKLISLYSRTGRLDD 67

Query: 173 ARQLFDKMGIRDSVSYNS-MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQL 231
           AR++FD +      ++N+ +I   + S +  +A   F +  I   + I+ +++L   A+ 
Sbjct: 68  ARRVFDAIPRPSVFAWNAILIALSLHSPDPSAAVRFFAASGISP-DEITLSALLKSLAES 126

Query: 232 KSGL------QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWA 285
              L      +F     ++    DL   N ++      G    A+A+FDKMP+RDVVSW 
Sbjct: 127 GPRLSALVAAEFHAVAVQRGFGDDLFVSNGLITAYANAGDSRSARAVFDKMPQRDVVSWN 186

Query: 286 NMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLH 345
           ++I  YA+ G       LF E+        +    G VR                     
Sbjct: 187 SLISAYARAGWYRECLELFQEL-------ASVHGAGGVR--------------------- 218

Query: 346 PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKV 405
           P+  ++  +L A AQL  ID GV +HR+  ++   ++     + +  Y+KCG ++ A ++
Sbjct: 219 PNSVTVASILHACAQLKAIDYGVRVHRFAAENGLDMDVAVWNSTVGFYAKCGKLQYAREL 278

Query: 406 FEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457
           FE++       ++AMI G   HG  +   +L    +   I   +    GL+ 
Sbjct: 279 FERMPKKDAVSYSAMITGYMNHGHVDKGMELFQRSDAQGISIWNAVIAGLVQ 330


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 171/548 (31%), Positives = 290/548 (52%), Gaps = 39/548 (7%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +++   W  +I  ++     ++A+ +F  M  +G   D+F+ S VL AC+ LGL+  G Q
Sbjct: 211 ERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQ 270

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  + ++    D+ +   L+ +Y +C                               G+
Sbjct: 271 LHSRVIRLGLALDVCVGCSLVDMYAKCA----------------------------ADGS 302

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----ISWNSM 256
           ++ +R++F+ MP  E N++SW +++  Y Q     + A ++F KM    +     S++S+
Sbjct: 303 VDDSRKVFEQMP--EHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSV 360

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVS----WANMIDGYAKLGRVDIARRLFDEMPKRDV 312
           L  C         + ++    K  + S      ++I  YA+ GR++ AR+ FD + ++++
Sbjct: 361 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNL 420

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           V+ NA++ GY +N  S +A  +F+ +  +  +     +   +LS  A +G + KG  IH 
Sbjct: 421 VSYNAIVDGYAKNLKSEEAFLLFNEI-ADTGIGISAFTFASLLSGAASIGAMGKGEQIHG 479

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
            L K  +  N     ALI MYS+CG+IE A +VF ++ED +V  W +MI G A HG    
Sbjct: 480 RLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATR 539

Query: 433 AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV 492
           A ++  +M     +P++IT+  +L+AC+H G++ EG   F  M + H + P ++HY CMV
Sbjct: 540 ALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMV 599

Query: 493 DILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552
           D+LGR+G +  A   I  MP+  + ++WRTLL ACR + N  +G   A+ ++  +  + +
Sbjct: 600 DLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPA 659

Query: 553 SYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRD 612
           +Y+LLSN+ A  G W D  ++R  MKERNL K  GCSWIE+E  VH F V + S  Q   
Sbjct: 660 AYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQ 719

Query: 613 IYYMLDNM 620
           IY  LD +
Sbjct: 720 IYQELDQL 727



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 150/596 (25%), Positives = 281/596 (47%), Gaps = 67/596 (11%)

Query: 8   NQPCNSTQSTLLLLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPL 64
           N P + T  ++LL + C    +      +H +++ +G   ++ +   L++ +S   C   
Sbjct: 39  NAPPDLTTYSILL-KSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSK--CGD- 94

Query: 65  TEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL 124
           TE AR IF        K+D   W+A++  +++     +A+  F  ML+ G   +++  + 
Sbjct: 95  TETARLIF---EGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAA 151

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           V++ACS       G  I+G +                   V+ GYLE            D
Sbjct: 152 VIRACSNANYAWVGEIIYGFV-------------------VKTGYLE-----------AD 181

Query: 185 SVSYNSMIDGYVK-SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-----LQFA 238
                 +ID +VK SG++ SA ++FD MP  ERNL++W  ++  +AQL        L   
Sbjct: 182 VCVGCELIDMFVKGSGDLGSAYKVFDKMP--ERNLVTWTLMITRFAQLGCARDAIDLFLD 239

Query: 239 WQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKL 294
            ++   +P+R   +++S+L  C + G +   + L  ++ +     DV    +++D YAK 
Sbjct: 240 MELSGYVPDR--FTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKC 297

Query: 295 ---GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMK-ALEIFDNMQCELYLHPDDAS 350
              G VD +R++F++MP+ +V++  A++  YV++G   K A+E+F  M    ++ P+  S
Sbjct: 298 AADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKM-ISGHIRPNHFS 356

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE 410
              VL A   L     G  ++ Y  K   +     G +LI MY++ G +E+A K F+ + 
Sbjct: 357 FSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILF 416

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470
           + ++  +NA+++G A +   E AF L  E+    I     TF  LL+  A  G + +G  
Sbjct: 417 EKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGE- 475

Query: 471 CFELMRRIHKLEPELQHYGC--MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA-C 527
             ++  R+ K   +     C  ++ +  R G+IEAA  +  +M  + N + W ++++   
Sbjct: 476 --QIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFA 532

Query: 528 RNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARR-VRSMMKERNL 582
           ++       E   K L      N  +YV + +  + +GM ++ ++   SM KE  +
Sbjct: 533 KHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGI 588



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 160/367 (43%), Gaps = 50/367 (13%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+ C  L+D     Q+++  +  G      +   L++ ++ S        A  I F+  
Sbjct: 360 VLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFE-- 417

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
                K+   +NAI+  Y+  L  +EA ++F  + D G+ +  F+ + +L   + +G + 
Sbjct: 418 -----KNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMG 472

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           +G QIHG L K  + S+  + N LIS+Y RCG +E A Q+F++M  R+ +S+ SMI G+ 
Sbjct: 473 KGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFA 532

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
           K G    A E+F  M                               E   + + I++ ++
Sbjct: 533 KHGFATRALEMFHKM------------------------------LETGTKPNEITYVAV 562

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVV-----SWANMIDGYAKLGRVDIARRLFDEMP-KR 310
           L  C   G + + Q  F+ M K   +      +A M+D   + G +  A    + MP   
Sbjct: 563 LSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMA 622

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI-AQLGHIDKGVA 369
           D +    ++G    +G +       + +   L   PDD +  I+LS + A  G     V 
Sbjct: 623 DALVWRTLLGACRVHGNTELGRHAAEMI---LEQEPDDPAAYILLSNLHASAGQWKDVVK 679

Query: 370 IHRYLEK 376
           I + +++
Sbjct: 680 IRKSMKE 686


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 171/548 (31%), Positives = 290/548 (52%), Gaps = 39/548 (7%)

Query: 81  KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140
           +++   W  +I  ++     ++A+ +F  M  +G   D+F+ S VL AC+ LGL+  G Q
Sbjct: 193 ERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQ 252

Query: 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGN 200
           +H  + ++    D+ +   L+ +Y +C                               G+
Sbjct: 253 LHSRVIRLGLALDVCVGCSLVDMYAKCA----------------------------ADGS 284

Query: 201 IESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDL----ISWNSM 256
           ++ +R++F+ MP  E N++SW +++  Y Q     + A ++F KM    +     S++S+
Sbjct: 285 VDDSRKVFEQMP--EHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSV 342

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVVS----WANMIDGYAKLGRVDIARRLFDEMPKRDV 312
           L  C         + ++    K  + S      ++I  YA+ GR++ AR+ FD + ++++
Sbjct: 343 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNL 402

Query: 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372
           V+ NA++ GY +N  S +A  +F+ +  +  +     +   +LS  A +G + KG  IH 
Sbjct: 403 VSYNAIVDGYAKNLKSEEAFLLFNEIA-DTGIGISAFTFASLLSGAASIGAMGKGEQIHG 461

Query: 373 YLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGEL 432
            L K  +  N     ALI MYS+CG+IE A +VF ++ED +V  W +MI G A HG    
Sbjct: 462 RLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATR 521

Query: 433 AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV 492
           A ++  +M     +P++IT+  +L+AC+H G++ EG   F  M + H + P ++HY CMV
Sbjct: 522 ALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMV 581

Query: 493 DILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552
           D+LGR+G +  A   I  MP+  + ++WRTLL ACR + N  +G   A+ ++  +  + +
Sbjct: 582 DLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPA 641

Query: 553 SYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRD 612
           +Y+LLSN+ A  G W D  ++R  MKERNL K  GCSWIE+E  VH F V + S  Q   
Sbjct: 642 AYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQ 701

Query: 613 IYYMLDNM 620
           IY  LD +
Sbjct: 702 IYQELDQL 709



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 150/596 (25%), Positives = 281/596 (47%), Gaps = 67/596 (11%)

Query: 8   NQPCNSTQSTLLLLRKCKTLNDVNQ---IHARMITTGFIKNTHLTTKLVASFSSSPCTPL 64
           N P + T  ++LL + C    +      +H +++ +G   ++ +   L++ +S   C   
Sbjct: 21  NAPPDLTTYSILL-KSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYS--KCGD- 76

Query: 65  TEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL 124
           TE AR IF        K+D   W+A++  +++     +A+  F  ML+ G   +++  + 
Sbjct: 77  TETARLIF---EGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAA 133

Query: 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD 184
           V++ACS       G  I+G +                   V+ GYLE            D
Sbjct: 134 VIRACSNANYAWVGEIIYGFV-------------------VKTGYLE-----------AD 163

Query: 185 SVSYNSMIDGYVK-SGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-----LQFA 238
                 +ID +VK SG++ SA ++FD MP  ERNL++W  ++  +AQL        L   
Sbjct: 164 VCVGCELIDMFVKGSGDLGSAYKVFDKMP--ERNLVTWTLMITRFAQLGCARDAIDLFLD 221

Query: 239 WQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKL 294
            ++   +P+R   +++S+L  C + G +   + L  ++ +     DV    +++D YAK 
Sbjct: 222 MELSGYVPDR--FTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKC 279

Query: 295 ---GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMK-ALEIFDNMQCELYLHPDDAS 350
              G VD +R++F++MP+ +V++  A++  YV++G   K A+E+F  M    ++ P+  S
Sbjct: 280 AADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKM-ISGHIRPNHFS 338

Query: 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE 410
              VL A   L     G  ++ Y  K   +     G +LI MY++ G +E+A K F+ + 
Sbjct: 339 FSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILF 398

Query: 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470
           + ++  +NA+++G A +   E AF L  E+    I     TF  LL+  A  G + +G  
Sbjct: 399 EKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGE- 457

Query: 471 CFELMRRIHKLEPELQHYGC--MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA-C 527
             ++  R+ K   +     C  ++ +  R G+IEAA  +  +M  + N + W ++++   
Sbjct: 458 --QIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFA 514

Query: 528 RNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARR-VRSMMKERNL 582
           ++       E   K L      N  +YV + +  + +GM ++ ++   SM KE  +
Sbjct: 515 KHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGI 570



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 160/367 (43%), Gaps = 50/367 (13%)

Query: 20  LLRKCKTLNDV---NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76
           +L+ C  L+D     Q+++  +  G      +   L++ ++ S        A  I F+  
Sbjct: 342 VLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFE-- 399

Query: 77  AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIE 136
                K+   +NAI+  Y+  L  +EA ++F  + D G+ +  F+ + +L   + +G + 
Sbjct: 400 -----KNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMG 454

Query: 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYV 196
           +G QIHG L K  + S+  + N LIS+Y RCG +E A Q+F++M  R+ +S+ SMI G+ 
Sbjct: 455 KGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFA 514

Query: 197 KSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSM 256
           K G    A E+F  M                               E   + + I++ ++
Sbjct: 515 KHGFATRALEMFHKM------------------------------LETGTKPNEITYVAV 544

Query: 257 LHGCVKCGKMDDAQALFDKMPKRDVV-----SWANMIDGYAKLGRVDIARRLFDEMP-KR 310
           L  C   G + + Q  F+ M K   +      +A M+D   + G +  A    + MP   
Sbjct: 545 LSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMA 604

Query: 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI-AQLGHIDKGVA 369
           D +    ++G    +G +       + +   L   PDD +  I+LS + A  G     V 
Sbjct: 605 DALVWRTLLGACRVHGNTELGRHAAEMI---LEQEPDDPAAYILLSNLHASAGQWKDVVK 661

Query: 370 IHRYLEK 376
           I + +++
Sbjct: 662 IRKSMKE 668


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.324    0.138    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,835,176,757
Number of Sequences: 23463169
Number of extensions: 408486409
Number of successful extensions: 1380609
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7317
Number of HSP's successfully gapped in prelim test: 4482
Number of HSP's that attempted gapping in prelim test: 1122357
Number of HSP's gapped (non-prelim): 61438
length of query: 634
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 485
effective length of database: 8,863,183,186
effective search space: 4298643845210
effective search space used: 4298643845210
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 80 (35.4 bits)