Query 047120
Match_columns 634
No_of_seqs 603 out of 4220
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 07:50:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047120.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047120hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 4.8E-85 1.1E-89 718.0 67.0 601 15-626 90-774 (857)
2 PLN03081 pentatricopeptide (PP 100.0 5.6E-74 1.2E-78 615.5 59.0 518 80-626 83-611 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 5.7E-71 1.2E-75 606.6 57.3 563 9-586 49-625 (857)
4 PLN03218 maturation of RBCL 1; 100.0 6.3E-63 1.4E-67 531.3 56.2 508 42-586 366-915 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 5.1E-62 1.1E-66 524.3 53.3 493 13-517 372-915 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 3.9E-58 8.5E-63 493.1 46.6 457 13-483 89-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.5E-33 5.5E-38 316.3 60.1 550 17-582 301-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1E-32 2.2E-37 311.4 60.6 548 15-578 333-898 (899)
9 PRK11447 cellulose synthase su 100.0 1.8E-24 3.8E-29 244.4 56.1 537 24-579 41-739 (1157)
10 PRK11447 cellulose synthase su 100.0 4E-24 8.8E-29 241.5 57.8 517 19-552 120-746 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 1.2E-21 2.6E-26 211.2 55.7 227 348-582 477-708 (987)
12 PRK09782 bacteriophage N4 rece 99.9 2.4E-20 5.1E-25 201.3 56.7 535 25-583 58-743 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 2.4E-22 5.2E-27 192.1 33.6 441 87-569 51-508 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 1.5E-21 3.2E-26 186.8 30.5 356 218-583 116-488 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 6.1E-19 1.3E-23 187.4 41.2 417 123-580 131-571 (615)
16 PRK11788 tetratricopeptide rep 99.9 3.2E-19 6.8E-24 180.2 29.7 290 291-587 45-354 (389)
17 KOG2002 TPR-containing nuclear 99.9 1.6E-17 3.5E-22 167.8 40.5 523 50-582 166-747 (1018)
18 TIGR00990 3a0801s09 mitochondr 99.9 1.4E-17 3E-22 177.1 41.9 421 87-552 130-577 (615)
19 KOG2002 TPR-containing nuclear 99.8 1.4E-16 3E-21 161.2 44.0 541 28-583 181-801 (1018)
20 PRK11788 tetratricopeptide rep 99.8 3.2E-18 6.9E-23 172.9 31.7 286 257-547 42-348 (389)
21 PRK10049 pgaA outer membrane p 99.8 6.1E-17 1.3E-21 175.3 42.8 406 117-551 13-461 (765)
22 PRK15174 Vi polysaccharide exp 99.8 1.7E-17 3.6E-22 175.7 35.7 349 165-550 16-385 (656)
23 PRK14574 hmsH outer membrane p 99.8 3.2E-16 6.9E-21 166.1 45.0 444 87-554 38-521 (822)
24 PRK10049 pgaA outer membrane p 99.8 6.9E-17 1.5E-21 174.8 40.1 397 152-582 13-458 (765)
25 PRK15174 Vi polysaccharide exp 99.8 1.1E-16 2.4E-21 169.4 38.1 341 129-511 15-378 (656)
26 PRK14574 hmsH outer membrane p 99.8 1.4E-14 3.1E-19 153.7 45.1 429 127-580 42-513 (822)
27 KOG0495 HAT repeat protein [RN 99.8 9.2E-14 2E-18 134.8 45.3 497 82-600 378-898 (913)
28 KOG2003 TPR repeat-containing 99.8 3.3E-16 7.2E-21 145.0 25.4 440 121-567 200-710 (840)
29 KOG4422 Uncharacterized conser 99.7 3.1E-13 6.7E-18 124.8 40.5 330 2-385 105-470 (625)
30 KOG0495 HAT repeat protein [RN 99.7 7E-12 1.5E-16 122.1 46.9 504 32-561 367-895 (913)
31 KOG2076 RNA polymerase III tra 99.7 2.6E-12 5.5E-17 130.0 41.4 538 18-562 146-785 (895)
32 KOG2003 TPR repeat-containing 99.7 4.8E-13 1E-17 124.3 32.0 467 21-500 159-709 (840)
33 KOG2076 RNA polymerase III tra 99.7 1E-11 2.2E-16 125.8 41.9 517 56-582 149-771 (895)
34 KOG1915 Cell cycle control pro 99.7 1.3E-11 2.9E-16 115.7 39.6 489 82-578 71-623 (677)
35 KOG4422 Uncharacterized conser 99.6 1.8E-11 3.8E-16 113.5 38.1 427 84-584 116-594 (625)
36 KOG0547 Translocase of outer m 99.6 3.8E-13 8.2E-18 126.5 27.5 214 360-579 338-565 (606)
37 PF13429 TPR_15: Tetratricopep 99.6 1.3E-15 2.7E-20 145.5 10.6 257 317-579 13-276 (280)
38 KOG2047 mRNA splicing factor [ 99.6 5.3E-10 1.1E-14 109.1 47.9 544 12-568 41-711 (835)
39 KOG1155 Anaphase-promoting com 99.6 4.5E-11 9.7E-16 112.1 35.5 327 248-579 162-494 (559)
40 KOG0547 Translocase of outer m 99.6 5.2E-11 1.1E-15 112.4 34.0 220 321-547 335-567 (606)
41 KOG1173 Anaphase-promoting com 99.6 4.4E-11 9.5E-16 115.0 33.4 264 311-580 243-518 (611)
42 KOG1126 DNA-binding cell divis 99.5 6.2E-13 1.3E-17 130.3 20.7 280 295-583 333-623 (638)
43 PRK10747 putative protoheme IX 99.5 7.4E-12 1.6E-16 125.1 29.2 245 323-578 129-388 (398)
44 KOG4318 Bicoid mRNA stability 99.5 6.4E-11 1.4E-15 119.5 35.1 503 31-584 10-598 (1088)
45 PRK10747 putative protoheme IX 99.5 3.1E-11 6.7E-16 120.7 32.6 276 263-547 97-391 (398)
46 TIGR00540 hemY_coli hemY prote 99.5 5E-11 1.1E-15 120.0 32.0 278 262-544 96-397 (409)
47 KOG1915 Cell cycle control pro 99.5 2.4E-10 5.2E-15 107.4 33.5 419 153-580 72-536 (677)
48 KOG1126 DNA-binding cell divis 99.5 4.1E-12 8.9E-17 124.6 20.4 247 326-581 333-587 (638)
49 KOG4162 Predicted calmodulin-b 99.5 5.1E-10 1.1E-14 111.8 35.1 424 149-593 318-795 (799)
50 TIGR00540 hemY_coli hemY prote 99.5 9.4E-11 2E-15 118.0 30.4 280 292-579 95-398 (409)
51 KOG4318 Bicoid mRNA stability 99.5 1.1E-10 2.3E-15 117.9 29.5 62 518-579 492-556 (1088)
52 KOG1155 Anaphase-promoting com 99.5 4.2E-10 9.1E-15 105.7 31.4 284 289-580 235-536 (559)
53 COG2956 Predicted N-acetylgluc 99.5 1.2E-10 2.6E-15 104.3 26.3 260 262-526 47-324 (389)
54 PF13429 TPR_15: Tetratricopep 99.5 1.6E-13 3.5E-18 131.0 8.9 226 353-581 13-244 (280)
55 KOG2047 mRNA splicing factor [ 99.4 1.7E-08 3.7E-13 98.8 41.5 486 85-580 103-687 (835)
56 COG3071 HemY Uncharacterized e 99.4 1.2E-09 2.7E-14 101.1 29.9 275 263-546 97-390 (400)
57 KOG3785 Uncharacterized conser 99.4 8.9E-10 1.9E-14 99.9 27.9 217 297-548 270-492 (557)
58 COG2956 Predicted N-acetylgluc 99.4 2.6E-10 5.7E-15 102.2 23.5 289 294-586 48-353 (389)
59 TIGR02521 type_IV_pilW type IV 99.4 1.1E-10 2.3E-15 108.8 22.8 197 383-580 31-232 (234)
60 KOG1173 Anaphase-promoting com 99.3 3.5E-08 7.5E-13 95.6 35.7 279 279-562 242-534 (611)
61 KOG2376 Signal recognition par 99.3 5.4E-08 1.2E-12 94.7 36.4 457 89-577 17-517 (652)
62 COG3071 HemY Uncharacterized e 99.3 2.6E-09 5.7E-14 99.0 26.3 276 294-578 97-388 (400)
63 KOG1174 Anaphase-promoting com 99.3 2.7E-08 5.9E-13 92.3 32.6 389 154-552 97-506 (564)
64 KOG0985 Vesicle coat protein c 99.3 2E-07 4.4E-12 95.9 41.6 243 310-578 982-1247(1666)
65 KOG1840 Kinesin light chain [C 99.3 6.8E-10 1.5E-14 110.4 22.6 191 389-579 247-478 (508)
66 PF13041 PPR_2: PPR repeat fam 99.3 4.4E-12 9.6E-17 84.4 4.8 50 82-131 1-50 (50)
67 KOG3785 Uncharacterized conser 99.3 5.4E-08 1.2E-12 88.6 31.5 440 91-582 29-492 (557)
68 PRK12370 invasion protein regu 99.3 1.7E-09 3.8E-14 113.1 25.1 246 326-582 275-537 (553)
69 KOG1129 TPR repeat-containing 99.3 3.4E-10 7.5E-15 101.4 16.2 229 316-582 227-460 (478)
70 KOG1174 Anaphase-promoting com 99.2 4.4E-07 9.5E-12 84.6 36.7 384 187-582 99-502 (564)
71 KOG0624 dsRNA-activated protei 99.2 2.5E-08 5.3E-13 90.4 27.2 339 256-626 44-427 (504)
72 TIGR02521 type_IV_pilW type IV 99.2 4.4E-09 9.6E-14 97.9 23.7 161 385-547 67-233 (234)
73 KOG1129 TPR repeat-containing 99.2 1E-09 2.2E-14 98.4 16.9 191 387-582 227-426 (478)
74 PRK11189 lipoprotein NlpI; Pro 99.2 3.8E-09 8.3E-14 101.0 21.1 116 326-442 40-160 (296)
75 PRK12370 invasion protein regu 99.2 4.4E-09 9.6E-14 110.1 23.3 211 362-580 275-502 (553)
76 KOG1156 N-terminal acetyltrans 99.2 7.5E-07 1.6E-11 88.0 36.1 124 451-577 373-508 (700)
77 PRK11189 lipoprotein NlpI; Pro 99.2 3.1E-08 6.7E-13 94.8 26.0 211 363-582 41-267 (296)
78 KOG3616 Selective LIM binding 99.2 6.2E-07 1.4E-11 89.4 34.8 340 160-540 563-905 (1636)
79 PF13041 PPR_2: PPR repeat fam 99.1 1.5E-10 3.3E-15 77.0 6.9 50 412-461 1-50 (50)
80 KOG4340 Uncharacterized conser 99.1 1.1E-07 2.3E-12 84.6 26.4 381 191-580 16-443 (459)
81 COG3063 PilF Tfp pilus assembl 99.1 4.7E-09 1E-13 90.0 17.2 163 416-582 37-204 (250)
82 KOG1156 N-terminal acetyltrans 99.1 2.7E-06 5.9E-11 84.1 36.7 224 47-278 9-247 (700)
83 KOG3616 Selective LIM binding 99.1 1.6E-06 3.4E-11 86.6 34.9 472 47-576 590-1130(1636)
84 KOG4162 Predicted calmodulin-b 99.1 1.8E-06 3.9E-11 87.1 34.4 430 107-552 311-789 (799)
85 KOG0548 Molecular co-chaperone 99.1 6.6E-08 1.4E-12 93.3 23.0 237 315-563 227-472 (539)
86 KOG1840 Kinesin light chain [C 99.1 2.7E-08 5.9E-13 99.2 21.2 192 354-545 247-478 (508)
87 PF12569 NARP1: NMDA receptor- 99.1 9.4E-07 2E-11 89.5 32.4 256 314-576 196-516 (517)
88 KOG1127 TPR repeat-containing 99.0 9E-07 2E-11 91.4 31.8 535 32-579 477-1103(1238)
89 KOG2376 Signal recognition par 99.0 2.3E-06 5E-11 83.7 32.3 345 229-581 90-488 (652)
90 KOG3617 WD40 and TPR repeat-co 99.0 7.3E-06 1.6E-10 83.1 34.5 342 45-441 725-1107(1416)
91 COG3063 PilF Tfp pilus assembl 99.0 2.9E-07 6.3E-12 79.3 21.3 191 357-551 44-241 (250)
92 KOG0985 Vesicle coat protein c 99.0 1.1E-05 2.4E-10 83.6 36.0 338 183-564 982-1326(1666)
93 KOG0548 Molecular co-chaperone 99.0 1.1E-06 2.3E-11 85.1 26.8 432 54-529 10-471 (539)
94 PF12569 NARP1: NMDA receptor- 99.0 1.1E-06 2.4E-11 89.0 28.5 282 290-579 13-333 (517)
95 KOG1125 TPR repeat-containing 98.9 5.3E-08 1.2E-12 94.7 16.7 215 360-580 297-527 (579)
96 PF04733 Coatomer_E: Coatomer 98.9 2.8E-08 6.1E-13 93.5 14.1 79 500-578 182-263 (290)
97 cd05804 StaR_like StaR_like; a 98.9 4.2E-06 9E-11 83.4 29.9 294 283-581 8-337 (355)
98 KOG0624 dsRNA-activated protei 98.9 2.5E-06 5.4E-11 77.7 24.6 293 283-582 40-372 (504)
99 KOG3617 WD40 and TPR repeat-co 98.9 4.1E-05 8.9E-10 77.9 35.1 254 118-409 725-993 (1416)
100 PF04733 Coatomer_E: Coatomer 98.8 2.2E-07 4.8E-12 87.5 16.8 226 315-552 38-271 (290)
101 TIGR03302 OM_YfiO outer membra 98.8 3.6E-07 7.7E-12 85.0 17.9 179 382-580 32-232 (235)
102 KOG4340 Uncharacterized conser 98.8 1.4E-05 3.1E-10 71.4 25.2 285 85-410 11-337 (459)
103 PRK10370 formate-dependent nit 98.8 6E-07 1.3E-11 79.8 17.0 149 421-583 23-176 (198)
104 PRK04841 transcriptional regul 98.7 4.4E-05 9.6E-10 86.4 35.5 322 259-581 383-761 (903)
105 KOG1127 TPR repeat-containing 98.7 1.8E-05 3.8E-10 82.3 27.2 454 100-577 474-993 (1238)
106 cd05804 StaR_like StaR_like; a 98.7 6.7E-05 1.4E-09 74.8 30.6 266 313-581 7-294 (355)
107 PRK15359 type III secretion sy 98.6 5.7E-07 1.2E-11 75.6 12.4 91 490-580 29-121 (144)
108 KOG1070 rRNA processing protei 98.6 4.5E-06 9.8E-11 89.4 20.6 200 380-583 1455-1666(1710)
109 KOG1125 TPR repeat-containing 98.6 3.6E-06 7.8E-11 82.3 18.2 246 321-573 294-564 (579)
110 PRK15359 type III secretion sy 98.6 1.6E-06 3.5E-11 72.8 14.1 122 435-562 14-137 (144)
111 PRK15179 Vi polysaccharide bio 98.6 4E-06 8.7E-11 88.4 19.7 158 413-580 85-245 (694)
112 PLN02789 farnesyltranstransfer 98.5 5.1E-05 1.1E-09 72.6 23.8 176 399-578 88-300 (320)
113 PF12854 PPR_1: PPR repeat 98.5 1.5E-07 3.2E-12 56.0 4.1 33 149-181 2-34 (34)
114 COG5010 TadD Flp pilus assembl 98.5 5.6E-06 1.2E-10 73.2 15.5 124 455-580 72-197 (257)
115 PF12854 PPR_1: PPR repeat 98.5 7.6E-08 1.7E-12 57.2 2.8 32 79-110 2-33 (34)
116 KOG1070 rRNA processing protei 98.5 2.4E-05 5.2E-10 84.2 22.8 222 249-472 1457-1694(1710)
117 COG5010 TadD Flp pilus assembl 98.5 1.2E-05 2.5E-10 71.2 17.2 154 418-574 70-225 (257)
118 KOG1128 Uncharacterized conser 98.5 6.8E-06 1.5E-10 82.6 16.9 216 350-583 400-619 (777)
119 TIGR03302 OM_YfiO outer membra 98.5 1.4E-05 3E-10 74.2 18.1 181 347-548 32-234 (235)
120 PRK04841 transcriptional regul 98.5 0.00045 9.8E-09 78.3 33.7 324 257-580 348-720 (903)
121 COG4783 Putative Zn-dependent 98.5 2.7E-05 5.9E-10 75.0 19.7 139 421-581 313-455 (484)
122 PRK10370 formate-dependent nit 98.5 2.2E-05 4.8E-10 69.8 18.2 156 390-556 23-183 (198)
123 KOG1128 Uncharacterized conser 98.4 3.5E-05 7.6E-10 77.7 20.6 190 378-582 393-584 (777)
124 PRK15179 Vi polysaccharide bio 98.4 4.4E-05 9.5E-10 80.7 21.9 143 378-524 81-229 (694)
125 PRK15363 pathogenicity island 98.4 2.4E-06 5.3E-11 70.2 9.6 96 485-580 35-132 (157)
126 KOG1914 mRNA cleavage and poly 98.4 0.0031 6.7E-08 61.9 34.8 434 116-577 17-536 (656)
127 KOG3081 Vesicle coat complex C 98.4 8.3E-05 1.8E-09 65.9 18.9 115 459-577 147-268 (299)
128 PRK14720 transcript cleavage f 98.4 6.5E-05 1.4E-09 80.2 21.9 33 595-628 329-361 (906)
129 KOG3081 Vesicle coat complex C 98.4 0.00038 8.3E-09 61.8 22.5 174 371-551 96-276 (299)
130 TIGR02552 LcrH_SycD type III s 98.3 5.1E-06 1.1E-10 69.5 10.7 96 486-581 18-115 (135)
131 PLN02789 farnesyltranstransfer 98.3 0.00048 1E-08 66.0 25.1 235 315-556 40-312 (320)
132 KOG3060 Uncharacterized conser 98.3 0.00014 3.1E-09 63.9 19.1 165 389-556 58-230 (289)
133 COG4783 Putative Zn-dependent 98.3 0.00016 3.4E-09 70.0 20.1 119 459-579 316-436 (484)
134 PRK14720 transcript cleavage f 98.3 0.00029 6.2E-09 75.5 24.0 80 350-442 118-197 (906)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2E-05 4.3E-10 76.9 13.5 123 451-578 171-295 (395)
136 KOG1914 mRNA cleavage and poly 98.2 0.0065 1.4E-07 59.7 35.9 173 328-502 347-527 (656)
137 KOG3060 Uncharacterized conser 98.2 0.00015 3.3E-09 63.8 17.1 163 416-582 54-222 (289)
138 TIGR00756 PPR pentatricopeptid 98.2 2.6E-06 5.6E-11 51.6 4.0 35 85-119 1-35 (35)
139 KOG2053 Mitochondrial inherita 98.1 0.017 3.6E-07 60.5 34.3 404 166-583 21-505 (932)
140 TIGR02552 LcrH_SycD type III s 98.1 7.6E-05 1.6E-09 62.3 12.8 114 436-553 5-121 (135)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00013 2.7E-09 71.4 15.8 127 384-515 170-298 (395)
142 PF13812 PPR_3: Pentatricopept 98.1 4.5E-06 9.8E-11 50.1 3.7 33 85-117 2-34 (34)
143 PF12895 Apc3: Anaphase-promot 98.1 3.3E-06 7.2E-11 63.5 3.7 78 498-576 2-83 (84)
144 PF09976 TPR_21: Tetratricopep 98.1 0.00012 2.6E-09 61.8 13.4 85 491-576 54-143 (145)
145 cd00189 TPR Tetratricopeptide 98.1 3E-05 6.6E-10 60.0 9.0 93 488-580 3-97 (100)
146 PF09976 TPR_21: Tetratricopep 98.0 0.00026 5.7E-09 59.7 14.9 124 417-544 15-145 (145)
147 TIGR02795 tol_pal_ybgF tol-pal 98.0 5.9E-05 1.3E-09 61.4 10.2 93 488-580 5-105 (119)
148 PF07079 DUF1347: Protein of u 98.0 0.018 3.8E-07 55.6 28.5 416 131-578 18-522 (549)
149 PF13414 TPR_11: TPR repeat; P 98.0 1.1E-05 2.5E-10 58.0 4.9 65 516-580 2-67 (69)
150 KOG0553 TPR repeat-containing 97.9 7.3E-05 1.6E-09 67.7 10.1 105 459-565 91-197 (304)
151 PF13432 TPR_16: Tetratricopep 97.9 2E-05 4.4E-10 55.8 5.4 58 523-580 3-60 (65)
152 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00014 3.1E-09 59.1 10.9 105 451-555 4-114 (119)
153 TIGR00756 PPR pentatricopeptid 97.9 2.1E-05 4.5E-10 47.5 4.5 33 416-448 2-34 (35)
154 KOG2053 Mitochondrial inherita 97.9 0.049 1.1E-06 57.2 41.4 206 97-309 22-254 (932)
155 PRK02603 photosystem I assembl 97.9 0.00014 3.1E-09 63.5 10.3 96 486-581 36-150 (172)
156 PLN03088 SGT1, suppressor of 97.8 0.00012 2.5E-09 72.1 10.6 109 454-564 7-117 (356)
157 PF13812 PPR_3: Pentatricopept 97.8 3.5E-05 7.7E-10 46.1 4.4 33 415-447 2-34 (34)
158 CHL00033 ycf3 photosystem I as 97.8 0.00014 3.1E-09 63.2 9.9 93 485-577 35-139 (168)
159 PRK10153 DNA-binding transcrip 97.8 0.00084 1.8E-08 69.0 16.8 139 412-552 335-488 (517)
160 PF04840 Vps16_C: Vps16, C-ter 97.8 0.03 6.4E-07 53.7 25.8 25 187-211 2-26 (319)
161 PF01535 PPR: PPR repeat; Int 97.8 2.5E-05 5.3E-10 45.6 3.2 31 85-115 1-31 (31)
162 KOG1538 Uncharacterized conser 97.7 0.0024 5.1E-08 63.8 17.5 282 80-443 552-846 (1081)
163 PLN03088 SGT1, suppressor of 97.7 0.00034 7.5E-09 68.7 12.1 104 419-526 7-112 (356)
164 PF14938 SNAP: Soluble NSF att 97.7 0.0055 1.2E-07 58.4 20.0 90 459-548 124-227 (282)
165 PRK02603 photosystem I assembl 97.7 0.00096 2.1E-08 58.2 13.3 129 415-566 36-166 (172)
166 PF12895 Apc3: Anaphase-promot 97.7 0.00011 2.3E-09 55.2 6.2 80 463-542 3-83 (84)
167 PF13432 TPR_16: Tetratricopep 97.7 0.00012 2.7E-09 51.7 5.9 61 491-551 3-65 (65)
168 KOG0553 TPR repeat-containing 97.6 0.00018 4E-09 65.2 7.6 90 493-582 89-180 (304)
169 cd00189 TPR Tetratricopeptide 97.6 0.00058 1.3E-08 52.5 9.6 91 456-548 7-99 (100)
170 PF14559 TPR_19: Tetratricopep 97.6 5.5E-05 1.2E-09 54.2 3.2 53 528-580 2-54 (68)
171 PF13371 TPR_9: Tetratricopept 97.6 0.00017 3.7E-09 52.5 5.8 58 525-582 3-60 (73)
172 PRK15331 chaperone protein Sic 97.6 0.00073 1.6E-08 56.2 9.7 90 490-579 42-133 (165)
173 COG4235 Cytochrome c biogenesi 97.6 0.0018 3.9E-08 59.3 12.8 105 482-586 153-262 (287)
174 COG4700 Uncharacterized protei 97.5 0.012 2.6E-07 49.5 15.8 132 445-580 85-222 (251)
175 PF14938 SNAP: Soluble NSF att 97.5 0.026 5.5E-07 53.8 20.9 95 417-511 158-263 (282)
176 PF12688 TPR_5: Tetratrico pep 97.5 0.0016 3.4E-08 52.0 10.5 87 491-577 7-101 (120)
177 PF10037 MRP-S27: Mitochondria 97.5 0.0014 3.1E-08 64.4 11.9 124 41-167 61-186 (429)
178 PF08579 RPM2: Mitochondrial r 97.5 0.0012 2.6E-08 50.5 8.7 80 87-166 28-116 (120)
179 PF04840 Vps16_C: Vps16, C-ter 97.5 0.12 2.5E-06 49.7 24.9 124 385-528 179-302 (319)
180 PRK10866 outer membrane biogen 97.5 0.018 3.9E-07 53.1 18.4 56 523-578 181-239 (243)
181 PF13431 TPR_17: Tetratricopep 97.5 6.4E-05 1.4E-09 44.6 1.5 34 539-572 1-34 (34)
182 CHL00033 ycf3 photosystem I as 97.4 0.0021 4.5E-08 55.9 11.5 99 451-549 37-152 (168)
183 KOG0550 Molecular chaperone (D 97.4 0.049 1.1E-06 52.0 20.6 85 391-477 257-349 (486)
184 KOG1130 Predicted G-alpha GTPa 97.4 0.0011 2.4E-08 62.5 9.8 130 450-579 196-343 (639)
185 PF01535 PPR: PPR repeat; Int 97.4 0.0002 4.3E-09 41.7 3.4 29 416-444 2-30 (31)
186 PRK10803 tol-pal system protei 97.4 0.0011 2.3E-08 61.6 9.6 93 488-580 146-246 (263)
187 PF14559 TPR_19: Tetratricopep 97.4 0.00018 4E-09 51.4 3.7 57 461-519 3-60 (68)
188 PF13414 TPR_11: TPR repeat; P 97.4 0.00029 6.3E-09 50.5 4.7 65 484-548 2-69 (69)
189 PRK10153 DNA-binding transcrip 97.4 0.0052 1.1E-07 63.2 15.4 135 444-582 332-484 (517)
190 KOG0550 Molecular chaperone (D 97.4 0.0058 1.2E-07 58.1 14.0 154 422-581 177-351 (486)
191 PF05843 Suf: Suppressor of fo 97.4 0.0056 1.2E-07 58.0 14.3 134 416-552 3-142 (280)
192 PF05843 Suf: Suppressor of fo 97.3 0.0018 3.9E-08 61.4 10.1 129 450-580 2-136 (280)
193 KOG1130 Predicted G-alpha GTPa 97.3 0.00059 1.3E-08 64.3 6.5 94 486-579 196-303 (639)
194 PRK15363 pathogenicity island 97.3 0.011 2.4E-07 49.1 13.2 94 385-479 37-133 (157)
195 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.2 4.3E-06 48.6 29.0 80 116-196 39-120 (660)
196 COG3898 Uncharacterized membra 97.3 0.18 3.9E-06 48.0 26.6 247 323-584 131-396 (531)
197 PF08579 RPM2: Mitochondrial r 97.3 0.0037 7.9E-08 47.9 9.3 79 418-497 29-116 (120)
198 KOG2280 Vacuolar assembly/sort 97.2 0.29 6.3E-06 50.7 24.8 115 447-577 682-796 (829)
199 PF13281 DUF4071: Domain of un 97.2 0.029 6.3E-07 54.2 17.1 160 388-550 146-338 (374)
200 KOG1258 mRNA processing protei 97.2 0.33 7.2E-06 49.1 26.4 181 382-565 296-489 (577)
201 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.0014 3.1E-08 63.8 8.0 62 485-546 75-141 (453)
202 PF13428 TPR_14: Tetratricopep 97.2 0.00053 1.2E-08 43.7 3.5 42 518-559 2-43 (44)
203 KOG2280 Vacuolar assembly/sort 97.1 0.48 1E-05 49.2 30.5 86 159-245 442-533 (829)
204 PF10037 MRP-S27: Mitochondria 97.1 0.0051 1.1E-07 60.7 11.0 114 16-132 68-186 (429)
205 KOG2041 WD40 repeat protein [G 97.0 0.49 1.1E-05 48.6 29.2 196 151-372 689-902 (1189)
206 KOG1538 Uncharacterized conser 97.0 0.13 2.7E-06 52.1 19.8 86 450-545 748-845 (1081)
207 PF12688 TPR_5: Tetratrico pep 97.0 0.028 6.1E-07 44.9 12.8 104 317-421 6-113 (120)
208 KOG2041 WD40 repeat protein [G 97.0 0.53 1.1E-05 48.4 29.3 217 66-313 680-910 (1189)
209 COG3898 Uncharacterized membra 97.0 0.35 7.7E-06 46.1 26.7 299 66-377 70-392 (531)
210 PF06239 ECSIT: Evolutionarily 97.0 0.028 6.1E-07 49.1 13.2 118 345-477 44-167 (228)
211 PRK10866 outer membrane biogen 97.0 0.19 4.2E-06 46.4 19.9 63 312-377 32-98 (243)
212 COG4700 Uncharacterized protei 97.0 0.19 4.1E-06 42.6 17.5 119 382-505 88-213 (251)
213 PRK10803 tol-pal system protei 97.0 0.0079 1.7E-07 55.9 10.7 102 451-552 145-252 (263)
214 PF13371 TPR_9: Tetratricopept 96.9 0.0028 6E-08 46.0 5.8 64 493-556 3-68 (73)
215 KOG2796 Uncharacterized conser 96.9 0.086 1.9E-06 47.2 15.5 138 313-453 178-323 (366)
216 PF13525 YfiO: Outer membrane 96.8 0.044 9.5E-07 49.2 14.0 49 523-571 147-198 (203)
217 COG4235 Cytochrome c biogenesi 96.8 0.036 7.9E-07 51.0 13.1 105 446-552 152-262 (287)
218 PF13424 TPR_12: Tetratricopep 96.8 0.0016 3.4E-08 48.0 3.6 62 518-579 6-74 (78)
219 KOG2796 Uncharacterized conser 96.7 0.16 3.5E-06 45.6 15.9 135 416-550 179-319 (366)
220 PF09205 DUF1955: Domain of un 96.7 0.04 8.6E-07 43.6 10.7 140 425-583 13-152 (161)
221 PF06239 ECSIT: Evolutionarily 96.7 0.023 5E-07 49.6 10.4 96 404-500 35-153 (228)
222 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.71 1.5E-05 45.0 28.8 132 415-550 398-535 (660)
223 PF13525 YfiO: Outer membrane 96.6 0.46 1E-05 42.6 19.2 61 317-377 10-71 (203)
224 PF13424 TPR_12: Tetratricopep 96.6 0.0029 6.3E-08 46.6 3.8 59 487-545 7-74 (78)
225 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.013 2.7E-07 57.4 8.7 63 517-579 75-140 (453)
226 PF07079 DUF1347: Protein of u 96.5 0.93 2E-05 44.3 37.3 139 21-166 16-179 (549)
227 KOG1585 Protein required for f 96.5 0.4 8.7E-06 42.7 16.7 86 488-574 153-250 (308)
228 KOG0543 FKBP-type peptidyl-pro 96.4 0.028 6E-07 53.8 10.2 95 486-580 258-355 (397)
229 KOG1941 Acetylcholine receptor 96.4 0.077 1.7E-06 49.8 12.7 122 455-576 128-271 (518)
230 KOG4555 TPR repeat-containing 96.4 0.027 5.9E-07 44.3 8.1 91 493-583 51-147 (175)
231 KOG1258 mRNA processing protei 96.3 1.6 3.4E-05 44.5 31.2 382 66-461 62-487 (577)
232 PRK11906 transcriptional regul 96.2 0.069 1.5E-06 52.6 12.0 143 429-574 273-430 (458)
233 KOG1920 IkappaB kinase complex 96.2 1.1 2.4E-05 49.3 21.3 112 416-543 941-1052(1265)
234 PF03704 BTAD: Bacterial trans 96.2 0.017 3.7E-07 48.8 6.9 62 518-579 63-124 (146)
235 PF13512 TPR_18: Tetratricopep 96.2 0.089 1.9E-06 43.0 10.4 89 492-580 17-128 (142)
236 PRK11906 transcriptional regul 96.0 0.4 8.7E-06 47.4 15.7 139 399-542 274-432 (458)
237 COG0457 NrfG FOG: TPR repeat [ 95.9 1.3 2.8E-05 40.5 26.3 85 495-579 177-264 (291)
238 KOG0543 FKBP-type peptidyl-pro 95.9 0.023 5E-07 54.4 6.9 66 517-582 257-322 (397)
239 PF04184 ST7: ST7 protein; In 95.8 0.7 1.5E-05 45.9 16.4 98 454-551 264-380 (539)
240 PRK09687 putative lyase; Provi 95.7 2 4.2E-05 40.7 27.1 79 279-360 35-117 (280)
241 COG0457 NrfG FOG: TPR repeat [ 95.7 1.7 3.6E-05 39.7 25.0 198 348-549 59-268 (291)
242 COG1729 Uncharacterized protei 95.6 0.072 1.6E-06 48.4 8.6 92 488-580 145-244 (262)
243 PF12921 ATP13: Mitochondrial 95.6 0.19 4.2E-06 40.6 10.1 49 445-493 48-96 (126)
244 COG1729 Uncharacterized protei 95.5 0.11 2.3E-06 47.4 9.3 93 461-553 153-251 (262)
245 KOG1920 IkappaB kinase complex 95.5 5.2 0.00011 44.4 22.8 26 87-112 793-820 (1265)
246 PF03704 BTAD: Bacterial trans 95.4 0.42 9.1E-06 40.2 12.4 70 416-487 64-138 (146)
247 COG3118 Thioredoxin domain-con 95.4 0.76 1.7E-05 42.4 14.2 122 458-582 143-267 (304)
248 PF13281 DUF4071: Domain of un 95.4 1.7 3.7E-05 42.4 17.5 67 290-357 150-226 (374)
249 PF13512 TPR_18: Tetratricopep 95.4 0.42 9.1E-06 39.1 11.4 119 417-552 13-134 (142)
250 KOG2114 Vacuolar assembly/sort 95.4 4.5 9.7E-05 43.1 21.1 51 388-438 710-760 (933)
251 COG4105 ComL DNA uptake lipopr 95.3 2.1 4.6E-05 38.8 19.7 57 523-579 173-232 (254)
252 COG3118 Thioredoxin domain-con 95.3 1.6 3.6E-05 40.4 15.9 155 421-577 141-299 (304)
253 smart00299 CLH Clathrin heavy 95.1 0.92 2E-05 37.8 13.3 83 51-144 12-94 (140)
254 PF10300 DUF3808: Protein of u 95.0 1.1 2.4E-05 46.0 16.0 161 417-580 191-376 (468)
255 PF10300 DUF3808: Protein of u 94.8 1.6 3.5E-05 44.8 16.8 158 317-477 193-375 (468)
256 PRK15331 chaperone protein Sic 94.8 0.74 1.6E-05 38.7 11.5 86 423-511 46-131 (165)
257 PF07719 TPR_2: Tetratricopept 94.8 0.067 1.5E-06 31.5 4.1 32 519-550 3-34 (34)
258 PF00515 TPR_1: Tetratricopept 94.7 0.049 1.1E-06 32.1 3.4 32 518-549 2-33 (34)
259 PF12921 ATP13: Mitochondrial 94.6 0.35 7.5E-06 39.2 9.0 47 480-526 47-97 (126)
260 COG4785 NlpI Lipoprotein NlpI, 94.6 2.7 5.9E-05 36.9 14.5 163 413-582 98-268 (297)
261 KOG2610 Uncharacterized conser 94.6 1.1 2.4E-05 42.0 12.9 114 395-511 115-235 (491)
262 KOG2610 Uncharacterized conser 94.5 0.35 7.5E-06 45.1 9.7 160 425-587 114-283 (491)
263 KOG1941 Acetylcholine receptor 94.4 3.7 8E-05 39.1 16.0 162 314-475 85-272 (518)
264 smart00299 CLH Clathrin heavy 94.3 2.6 5.7E-05 35.0 15.6 44 87-131 10-53 (140)
265 KOG4234 TPR repeat-containing 94.3 0.15 3.3E-06 43.7 6.4 104 456-559 102-210 (271)
266 PF04053 Coatomer_WDAD: Coatom 94.3 2.1 4.6E-05 43.4 15.7 130 253-408 298-427 (443)
267 KOG2066 Vacuolar assembly/sort 94.1 9.2 0.0002 40.5 23.3 30 253-282 508-537 (846)
268 KOG4555 TPR repeat-containing 93.9 0.15 3.2E-06 40.4 5.2 56 525-580 51-106 (175)
269 KOG3941 Intermediate in Toll s 93.9 0.22 4.7E-06 45.2 6.9 33 137-169 141-173 (406)
270 PF04053 Coatomer_WDAD: Coatom 93.8 5.8 0.00013 40.3 17.8 101 258-372 326-426 (443)
271 PRK11619 lytic murein transgly 93.6 12 0.00026 40.2 33.0 114 428-544 255-373 (644)
272 KOG3941 Intermediate in Toll s 93.6 0.72 1.6E-05 42.0 9.5 100 402-502 53-175 (406)
273 PF13176 TPR_7: Tetratricopept 93.3 0.13 2.9E-06 30.8 3.3 26 553-578 1-26 (36)
274 PF09613 HrpB1_HrpK: Bacterial 93.3 2.9 6.4E-05 35.1 12.1 88 458-547 19-107 (160)
275 PF04184 ST7: ST7 protein; In 93.2 2 4.3E-05 42.9 12.6 64 521-584 263-328 (539)
276 PF02259 FAT: FAT domain; Int 93.1 9.7 0.00021 37.6 20.5 149 413-564 145-305 (352)
277 PRK09687 putative lyase; Provi 93.1 8.2 0.00018 36.6 26.1 217 152-376 35-262 (280)
278 PF10602 RPN7: 26S proteasome 92.9 2.2 4.8E-05 37.1 11.5 94 416-511 38-139 (177)
279 COG2909 MalT ATP-dependent tra 92.8 9.2 0.0002 41.3 17.6 187 394-584 426-651 (894)
280 PF07035 Mic1: Colon cancer-as 92.7 4.9 0.00011 34.3 12.8 102 104-211 14-115 (167)
281 PF13428 TPR_14: Tetratricopep 92.6 0.19 4.1E-06 31.8 3.4 32 551-582 1-32 (44)
282 PF08631 SPO22: Meiosis protei 92.4 10 0.00022 36.0 22.5 18 527-544 256-273 (278)
283 PF00637 Clathrin: Region in C 92.3 0.065 1.4E-06 45.0 1.3 84 125-211 13-96 (143)
284 COG2976 Uncharacterized protei 92.2 7.3 0.00016 33.8 13.4 111 432-548 70-190 (207)
285 PF02259 FAT: FAT domain; Int 92.2 11 0.00024 37.2 17.4 66 515-580 144-213 (352)
286 PF13176 TPR_7: Tetratricopept 92.1 0.2 4.4E-06 30.0 3.0 28 519-546 1-28 (36)
287 PF09205 DUF1955: Domain of un 92.1 5.4 0.00012 32.1 14.5 62 418-481 90-151 (161)
288 PF13181 TPR_8: Tetratricopept 92.1 0.21 4.6E-06 29.3 3.1 30 519-548 3-32 (34)
289 KOG1586 Protein required for f 92.0 8.8 0.00019 34.3 15.2 61 492-552 161-230 (288)
290 KOG2066 Vacuolar assembly/sort 92.0 19 0.00042 38.3 29.3 96 161-262 363-467 (846)
291 KOG4648 Uncharacterized conser 91.9 0.22 4.9E-06 46.4 4.3 109 455-570 103-214 (536)
292 COG3629 DnrI DNA-binding trans 91.2 0.92 2E-05 42.2 7.5 61 519-579 155-215 (280)
293 PF10345 Cohesin_load: Cohesin 91.0 26 0.00056 37.8 29.9 127 84-211 59-205 (608)
294 KOG2062 26S proteasome regulat 90.8 24 0.00053 37.3 29.4 437 172-626 200-679 (929)
295 KOG1464 COP9 signalosome, subu 90.8 13 0.00028 34.0 17.9 241 295-541 41-327 (440)
296 PF08631 SPO22: Meiosis protei 90.7 16 0.00034 34.8 24.5 59 417-477 87-149 (278)
297 PF07719 TPR_2: Tetratricopept 90.6 0.33 7.1E-06 28.4 2.9 29 552-580 2-30 (34)
298 PF13170 DUF4003: Protein of u 90.5 8 0.00017 36.9 13.4 145 14-160 60-223 (297)
299 KOG0890 Protein kinase of the 90.4 51 0.0011 40.3 31.8 65 517-583 1670-1734(2382)
300 COG4649 Uncharacterized protei 89.8 6 0.00013 33.5 10.1 26 418-443 171-196 (221)
301 PF00515 TPR_1: Tetratricopept 89.8 0.43 9.3E-06 28.0 2.9 30 552-581 2-31 (34)
302 PF00637 Clathrin: Region in C 89.7 0.04 8.7E-07 46.3 -2.4 53 90-142 13-65 (143)
303 COG4649 Uncharacterized protei 89.3 13 0.00028 31.7 15.6 121 424-545 68-195 (221)
304 KOG1585 Protein required for f 89.2 9 0.0002 34.5 11.4 177 384-581 32-220 (308)
305 COG3629 DnrI DNA-binding trans 88.7 4.3 9.4E-05 37.9 9.8 74 385-458 155-236 (280)
306 PF09613 HrpB1_HrpK: Bacterial 88.6 2.8 6E-05 35.2 7.6 73 495-567 20-94 (160)
307 TIGR02561 HrpB1_HrpK type III 88.5 2.5 5.5E-05 34.8 7.1 71 497-567 22-94 (153)
308 PF07721 TPR_4: Tetratricopept 88.5 0.52 1.1E-05 25.7 2.3 24 552-575 2-25 (26)
309 PF13174 TPR_6: Tetratricopept 88.4 0.63 1.4E-05 26.9 2.9 27 523-549 6-32 (33)
310 PF02284 COX5A: Cytochrome c o 87.9 4.2 9.1E-05 30.9 7.3 62 430-493 26-87 (108)
311 KOG1586 Protein required for f 87.8 20 0.00044 32.2 15.8 91 491-581 119-225 (288)
312 PF13170 DUF4003: Protein of u 87.8 11 0.00024 35.9 12.3 123 368-493 82-225 (297)
313 PF10602 RPN7: 26S proteasome 87.8 6.5 0.00014 34.2 9.9 94 450-544 37-140 (177)
314 TIGR02561 HrpB1_HrpK type III 87.3 15 0.00031 30.5 10.7 49 461-511 22-70 (153)
315 PRK13800 putative oxidoreducta 87.1 60 0.0013 36.9 29.8 183 279-477 696-880 (897)
316 cd00923 Cyt_c_Oxidase_Va Cytoc 86.9 5.5 0.00012 30.0 7.4 63 429-493 22-84 (103)
317 PF13181 TPR_8: Tetratricopept 86.9 1.1 2.5E-05 26.0 3.4 29 552-580 2-30 (34)
318 PF10345 Cohesin_load: Cohesin 86.9 49 0.0011 35.7 29.7 186 82-277 28-252 (608)
319 KOG4234 TPR repeat-containing 86.6 6.1 0.00013 34.4 8.6 86 422-511 103-194 (271)
320 PF04097 Nic96: Nup93/Nic96; 86.1 53 0.0012 35.3 26.2 71 83-155 111-188 (613)
321 KOG1464 COP9 signalosome, subu 86.1 27 0.00059 32.0 17.3 198 309-506 23-252 (440)
322 KOG4648 Uncharacterized conser 85.8 2.1 4.6E-05 40.2 6.0 96 420-519 103-200 (536)
323 PF13374 TPR_10: Tetratricopep 85.6 1.3 2.7E-05 27.3 3.3 29 552-580 3-31 (42)
324 PF11207 DUF2989: Protein of u 85.4 4.3 9.4E-05 35.5 7.4 75 99-174 121-198 (203)
325 PRK13800 putative oxidoreducta 85.3 74 0.0016 36.2 28.1 255 271-545 625-880 (897)
326 KOG4642 Chaperone-dependent E3 85.2 2.5 5.3E-05 37.8 5.8 85 459-546 20-107 (284)
327 KOG1550 Extracellular protein 85.1 56 0.0012 34.7 23.3 247 324-581 261-539 (552)
328 PF13174 TPR_6: Tetratricopept 84.9 0.88 1.9E-05 26.2 2.2 28 553-580 2-29 (33)
329 COG4785 NlpI Lipoprotein NlpI, 84.3 29 0.00064 30.8 17.6 159 380-547 95-267 (297)
330 COG4105 ComL DNA uptake lipopr 84.1 34 0.00074 31.4 22.9 62 490-551 172-238 (254)
331 smart00028 TPR Tetratricopepti 84.1 2 4.3E-05 23.9 3.6 31 519-549 3-33 (34)
332 COG3947 Response regulator con 83.9 3.5 7.6E-05 38.0 6.3 61 519-579 281-341 (361)
333 PF06552 TOM20_plant: Plant sp 83.8 3.1 6.8E-05 35.5 5.7 65 512-583 63-139 (186)
334 KOG2114 Vacuolar assembly/sort 83.7 71 0.0015 34.7 28.9 138 164-309 378-518 (933)
335 PRK10941 hypothetical protein; 83.6 4.8 0.0001 37.6 7.5 62 519-580 183-244 (269)
336 PF14853 Fis1_TPR_C: Fis1 C-te 83.3 3 6.5E-05 27.6 4.3 34 522-555 6-39 (53)
337 PF13374 TPR_10: Tetratricopep 83.2 2.1 4.7E-05 26.2 3.7 29 518-546 3-31 (42)
338 KOG4570 Uncharacterized conser 82.8 8.1 0.00017 36.2 8.2 105 40-149 58-165 (418)
339 PRK11619 lytic murein transgly 82.8 75 0.0016 34.4 38.1 58 352-410 316-373 (644)
340 KOG1550 Extracellular protein 82.3 72 0.0016 33.9 19.8 244 328-581 228-505 (552)
341 PF13431 TPR_17: Tetratricopep 82.1 2.1 4.5E-05 25.2 3.0 22 153-174 12-33 (34)
342 PF07035 Mic1: Colon cancer-as 81.8 32 0.0007 29.4 15.5 47 139-185 14-60 (167)
343 COG4455 ImpE Protein of avirul 81.1 5.1 0.00011 35.3 6.1 62 489-550 5-68 (273)
344 PRK15180 Vi polysaccharide bio 80.8 21 0.00045 35.6 10.7 129 422-554 297-428 (831)
345 PF09986 DUF2225: Uncharacteri 80.8 13 0.00028 33.5 9.0 64 519-582 120-196 (214)
346 KOG4570 Uncharacterized conser 80.8 18 0.00039 34.0 9.7 97 377-477 58-163 (418)
347 PF14432 DYW_deaminase: DYW fa 80.2 2 4.2E-05 34.3 3.1 36 587-626 2-37 (116)
348 PRK15180 Vi polysaccharide bio 80.1 9.9 0.00021 37.8 8.3 130 394-526 300-434 (831)
349 smart00386 HAT HAT (Half-A-TPR 80.1 2.8 6.1E-05 23.8 3.2 30 531-560 1-30 (33)
350 PF06552 TOM20_plant: Plant sp 79.9 2.8 6.2E-05 35.8 4.1 49 532-580 50-109 (186)
351 PF14561 TPR_20: Tetratricopep 79.1 3.5 7.7E-05 31.0 4.1 42 539-580 10-51 (90)
352 PF04910 Tcf25: Transcriptiona 78.9 55 0.0012 32.4 13.4 64 516-579 99-167 (360)
353 PF13762 MNE1: Mitochondrial s 78.8 22 0.00047 29.5 8.8 98 32-132 23-128 (145)
354 KOG0276 Vesicle coat complex C 78.6 27 0.00058 36.1 10.8 99 395-511 649-747 (794)
355 KOG3364 Membrane protein invol 78.5 13 0.00028 30.1 7.0 70 482-551 29-105 (149)
356 KOG0276 Vesicle coat complex C 77.7 32 0.00069 35.6 11.1 16 459-474 731-746 (794)
357 PF02284 COX5A: Cytochrome c o 77.5 14 0.0003 28.3 6.5 47 512-558 40-86 (108)
358 TIGR03504 FimV_Cterm FimV C-te 77.1 4.5 9.8E-05 25.5 3.4 27 555-581 3-29 (44)
359 KOG0545 Aryl-hydrocarbon recep 76.7 9.2 0.0002 34.5 6.4 60 523-582 236-295 (329)
360 KOG1308 Hsp70-interacting prot 76.2 2.6 5.6E-05 39.9 3.1 87 497-583 126-214 (377)
361 PF11207 DUF2989: Protein of u 76.2 24 0.00052 31.0 8.7 73 431-504 123-197 (203)
362 KOG2422 Uncharacterized conser 75.7 41 0.0009 34.6 11.2 94 487-580 286-407 (665)
363 KOG2300 Uncharacterized conser 75.7 95 0.0021 31.4 30.4 158 418-577 327-511 (629)
364 cd00923 Cyt_c_Oxidase_Va Cytoc 75.1 20 0.00044 27.1 6.8 43 104-146 27-69 (103)
365 PF13929 mRNA_stabil: mRNA sta 75.0 56 0.0012 30.7 11.2 115 65-179 144-263 (292)
366 COG4455 ImpE Protein of avirul 74.9 63 0.0014 28.9 11.8 127 417-553 4-141 (273)
367 smart00028 TPR Tetratricopepti 73.8 4.9 0.00011 22.2 3.0 29 552-580 2-30 (34)
368 KOG0403 Neoplastic transformat 73.0 1.1E+02 0.0023 30.7 14.3 362 50-429 218-589 (645)
369 KOG0687 26S proteasome regulat 72.2 93 0.002 29.7 12.0 24 451-474 106-129 (393)
370 KOG0890 Protein kinase of the 71.9 2.6E+02 0.0057 34.8 29.4 109 449-561 1670-1799(2382)
371 PF10579 Rapsyn_N: Rapsyn N-te 71.8 6 0.00013 28.5 3.3 45 529-573 18-65 (80)
372 COG0790 FOG: TPR repeat, SEL1 71.4 96 0.0021 29.5 19.6 148 429-583 92-269 (292)
373 COG2976 Uncharacterized protei 70.9 73 0.0016 28.0 14.3 55 389-443 132-188 (207)
374 KOG4279 Serine/threonine prote 70.6 61 0.0013 34.6 11.3 60 314-377 203-272 (1226)
375 COG1747 Uncharacterized N-term 70.4 1.3E+02 0.0029 30.7 24.1 158 347-511 65-231 (711)
376 KOG0551 Hsp90 co-chaperone CNS 69.2 17 0.00038 34.4 6.6 90 488-577 84-179 (390)
377 KOG0376 Serine-threonine phosp 68.2 4 8.6E-05 40.6 2.5 100 455-557 10-112 (476)
378 KOG4507 Uncharacterized conser 68.2 24 0.00052 36.3 7.8 86 496-581 618-706 (886)
379 PF10579 Rapsyn_N: Rapsyn N-te 67.5 14 0.00031 26.7 4.5 17 461-477 18-34 (80)
380 KOG4507 Uncharacterized conser 67.4 15 0.00032 37.7 6.2 101 461-562 619-721 (886)
381 KOG3807 Predicted membrane pro 67.2 79 0.0017 30.1 10.3 34 535-568 380-419 (556)
382 KOG2300 Uncharacterized conser 67.1 1.5E+02 0.0033 30.1 32.6 121 322-442 333-473 (629)
383 TIGR03504 FimV_Cterm FimV C-te 65.4 16 0.00035 23.0 4.0 24 420-443 5-28 (44)
384 PF12862 Apc5: Anaphase-promot 64.0 18 0.00039 27.5 5.0 54 527-580 8-70 (94)
385 PF12968 DUF3856: Domain of Un 63.8 71 0.0015 25.4 7.9 20 558-577 107-126 (144)
386 COG1747 Uncharacterized N-term 63.7 1.8E+02 0.0039 29.8 21.0 174 311-494 65-248 (711)
387 cd08819 CARD_MDA5_2 Caspase ac 62.5 24 0.00051 26.2 4.9 37 294-331 49-85 (88)
388 KOG4642 Chaperone-dependent E3 62.4 96 0.0021 28.2 9.5 115 423-542 19-142 (284)
389 COG5191 Uncharacterized conser 61.8 14 0.00031 34.5 4.6 80 481-560 103-185 (435)
390 TIGR02270 conserved hypothetic 60.9 1.9E+02 0.0042 29.2 25.7 28 153-180 99-126 (410)
391 PF11846 DUF3366: Domain of un 60.6 32 0.00069 30.5 6.7 37 512-548 139-175 (193)
392 KOG4077 Cytochrome c oxidase, 60.3 59 0.0013 26.1 7.0 59 432-492 67-125 (149)
393 PF07163 Pex26: Pex26 protein; 60.1 1.2E+02 0.0026 28.4 9.9 83 390-472 90-181 (309)
394 KOG2396 HAT (Half-A-TPR) repea 59.6 2.1E+02 0.0046 29.3 35.1 239 331-579 301-558 (568)
395 KOG3783 Uncharacterized conser 59.6 2.2E+02 0.0048 29.5 24.3 69 514-582 444-522 (546)
396 PF11663 Toxin_YhaV: Toxin wit 59.1 15 0.00034 29.6 3.8 33 95-129 106-138 (140)
397 PRK10941 hypothetical protein; 58.6 42 0.00091 31.5 7.3 65 489-553 185-251 (269)
398 PF11838 ERAP1_C: ERAP1-like C 58.1 1.8E+02 0.004 28.1 18.1 112 465-576 146-262 (324)
399 PRK14956 DNA polymerase III su 57.9 1.3E+02 0.0028 31.1 11.0 114 16-156 164-285 (484)
400 PF08311 Mad3_BUB1_I: Mad3/BUB 57.9 56 0.0012 26.5 7.1 42 535-576 81-124 (126)
401 PF10366 Vps39_1: Vacuolar sor 57.7 60 0.0013 25.4 6.9 26 253-278 42-67 (108)
402 PF13762 MNE1: Mitochondrial s 57.2 91 0.002 26.0 8.1 83 85-167 40-128 (145)
403 cd08819 CARD_MDA5_2 Caspase ac 57.0 79 0.0017 23.5 7.1 64 369-434 23-86 (88)
404 COG2909 MalT ATP-dependent tra 56.8 3.1E+02 0.0068 30.4 25.4 88 322-410 425-524 (894)
405 PF06957 COPI_C: Coatomer (COP 56.5 70 0.0015 32.1 8.7 109 424-550 214-333 (422)
406 KOG4521 Nuclear pore complex, 56.4 3.4E+02 0.0074 31.2 14.1 119 452-573 986-1124(1480)
407 TIGR02508 type_III_yscG type I 56.2 90 0.002 24.0 9.6 59 391-452 47-105 (115)
408 PF11846 DUF3366: Domain of un 56.2 39 0.00085 29.9 6.6 32 480-511 139-170 (193)
409 PF11838 ERAP1_C: ERAP1-like C 56.1 1.7E+02 0.0038 28.3 11.8 29 119-147 201-229 (324)
410 COG4976 Predicted methyltransf 55.9 20 0.00044 32.1 4.3 57 495-551 5-63 (287)
411 PRK12798 chemotaxis protein; R 55.4 2.3E+02 0.005 28.4 22.0 180 396-578 125-322 (421)
412 PF14863 Alkyl_sulf_dimr: Alky 55.1 38 0.00082 28.1 5.6 63 501-566 57-119 (141)
413 COG5159 RPN6 26S proteasome re 54.7 1.9E+02 0.0041 27.2 13.0 121 317-438 8-149 (421)
414 PF10366 Vps39_1: Vacuolar sor 54.1 93 0.002 24.4 7.5 27 416-442 41-67 (108)
415 PF12862 Apc5: Anaphase-promot 54.0 38 0.00082 25.7 5.3 26 522-547 46-71 (94)
416 COG4976 Predicted methyltransf 54.0 24 0.00052 31.6 4.5 59 458-518 4-63 (287)
417 PRK09169 hypothetical protein; 53.8 5.5E+02 0.012 32.3 40.2 360 217-577 245-692 (2316)
418 PF09670 Cas_Cas02710: CRISPR- 53.8 2E+02 0.0043 28.8 11.6 51 426-477 143-197 (379)
419 TIGR02270 conserved hypothetic 53.6 2.6E+02 0.0055 28.4 26.0 53 240-292 90-142 (410)
420 KOG3364 Membrane protein invol 53.2 1.3E+02 0.0028 24.7 8.6 70 446-517 29-104 (149)
421 TIGR02508 type_III_yscG type I 52.8 1E+02 0.0023 23.6 8.3 76 135-213 21-96 (115)
422 PF04190 DUF410: Protein of un 52.5 2E+02 0.0044 26.9 15.7 160 394-579 1-169 (260)
423 KOG2297 Predicted translation 52.5 1.3E+02 0.0028 28.5 8.9 175 37-239 157-341 (412)
424 PF07163 Pex26: Pex26 protein; 52.3 1.8E+02 0.004 27.2 9.8 86 319-406 90-181 (309)
425 KOG4279 Serine/threonine prote 52.0 82 0.0018 33.7 8.5 21 557-577 350-370 (1226)
426 PF11848 DUF3368: Domain of un 51.8 47 0.001 21.4 4.6 31 131-161 14-44 (48)
427 PF14561 TPR_20: Tetratricopep 51.5 1E+02 0.0022 23.2 7.6 62 516-577 21-85 (90)
428 KOG4567 GTPase-activating prot 51.5 2E+02 0.0043 27.4 10.0 42 140-181 264-305 (370)
429 PF14853 Fis1_TPR_C: Fis1 C-te 51.3 24 0.00052 23.3 3.2 29 553-581 3-31 (53)
430 COG3947 Response regulator con 51.2 2.2E+02 0.0048 26.9 14.5 58 417-475 282-339 (361)
431 KOG0686 COP9 signalosome, subu 50.9 2.7E+02 0.0058 27.8 14.0 58 283-340 152-215 (466)
432 cd08326 CARD_CASP9 Caspase act 50.8 30 0.00065 25.6 4.0 54 278-331 27-80 (84)
433 KOG3824 Huntingtin interacting 50.6 25 0.00054 32.9 4.2 62 495-556 126-189 (472)
434 PF07720 TPR_3: Tetratricopept 50.5 46 0.00099 19.9 4.0 18 522-539 6-23 (36)
435 KOG0686 COP9 signalosome, subu 50.0 2.7E+02 0.006 27.7 13.4 60 384-443 151-216 (466)
436 PF14689 SPOB_a: Sensor_kinase 49.5 36 0.00078 23.4 4.0 24 488-511 26-49 (62)
437 cd00280 TRFH Telomeric Repeat 49.0 62 0.0013 28.0 6.0 32 257-288 118-150 (200)
438 COG2912 Uncharacterized conser 48.8 57 0.0012 30.3 6.3 59 522-580 186-244 (269)
439 KOG0292 Vesicle coat complex C 47.7 1.9E+02 0.0042 31.8 10.5 133 391-547 651-783 (1202)
440 COG5159 RPN6 26S proteasome re 47.4 2.5E+02 0.0054 26.4 10.6 53 353-405 8-67 (421)
441 PF11848 DUF3368: Domain of un 47.0 47 0.001 21.4 4.0 34 95-128 13-46 (48)
442 KOG2063 Vacuolar assembly/sort 46.6 4.7E+02 0.01 29.4 18.0 27 86-112 506-532 (877)
443 KOG4567 GTPase-activating prot 45.7 2.8E+02 0.006 26.5 10.0 73 434-512 263-345 (370)
444 PRK14700 recombination factor 45.6 2.8E+02 0.006 26.5 13.6 138 12-169 19-176 (300)
445 PF04097 Nic96: Nup93/Nic96; 45.2 4.3E+02 0.0094 28.6 21.6 86 389-477 264-355 (613)
446 PF09868 DUF2095: Uncharacteri 45.0 79 0.0017 24.7 5.4 49 9-58 59-107 (128)
447 PF08311 Mad3_BUB1_I: Mad3/BUB 44.7 1.7E+02 0.0037 23.7 8.9 43 432-474 81-124 (126)
448 PF14689 SPOB_a: Sensor_kinase 44.4 49 0.0011 22.8 4.0 22 420-441 29-50 (62)
449 COG0735 Fur Fe2+/Zn2+ uptake r 44.3 1.1E+02 0.0025 25.4 7.0 62 106-168 8-69 (145)
450 COG4003 Uncharacterized protei 44.0 73 0.0016 23.1 4.7 38 14-52 34-71 (98)
451 PF13934 ELYS: Nuclear pore co 43.0 2.6E+02 0.0057 25.5 11.7 52 159-211 113-166 (226)
452 KOG2063 Vacuolar assembly/sort 42.7 5.4E+02 0.012 29.0 18.9 28 314-341 506-533 (877)
453 PF12968 DUF3856: Domain of Un 42.5 1.8E+02 0.0038 23.3 8.6 61 485-545 55-128 (144)
454 PF09797 NatB_MDM20: N-acetylt 41.4 53 0.0011 32.7 5.5 128 48-178 182-310 (365)
455 cd00280 TRFH Telomeric Repeat 41.4 83 0.0018 27.3 5.6 20 526-545 120-139 (200)
456 smart00777 Mad3_BUB1_I Mad3/BU 41.3 1.7E+02 0.0037 23.7 7.2 40 536-575 82-123 (125)
457 KOG4077 Cytochrome c oxidase, 41.2 1.2E+02 0.0026 24.4 6.0 44 512-555 79-122 (149)
458 PRK14958 DNA polymerase III su 40.5 1.6E+02 0.0034 31.0 8.8 112 16-155 162-281 (509)
459 PRK10564 maltose regulon perip 40.5 52 0.0011 31.1 4.7 36 117-152 254-290 (303)
460 PF12069 DUF3549: Protein of u 40.1 3.6E+02 0.0079 26.3 12.5 137 388-528 171-309 (340)
461 COG4259 Uncharacterized protei 39.9 81 0.0018 24.0 4.7 27 549-575 70-96 (121)
462 KOG0376 Serine-threonine phosp 39.9 53 0.0012 33.1 5.0 104 421-529 11-117 (476)
463 PHA02875 ankyrin repeat protei 39.8 4.1E+02 0.0089 26.8 15.0 232 32-276 16-264 (413)
464 PRK10564 maltose regulon perip 39.8 59 0.0013 30.7 5.0 40 416-455 259-298 (303)
465 PF12926 MOZART2: Mitotic-spin 39.4 1.6E+02 0.0034 21.9 6.8 41 140-180 29-69 (88)
466 PF10255 Paf67: RNA polymerase 38.8 1.9E+02 0.0042 29.0 8.6 57 283-339 124-191 (404)
467 COG2812 DnaX DNA polymerase II 38.3 3.3E+02 0.0071 28.5 10.4 111 17-155 163-281 (515)
468 PF11663 Toxin_YhaV: Toxin wit 37.5 42 0.00091 27.3 3.2 26 66-93 112-137 (140)
469 PRK13342 recombination factor 37.1 4.6E+02 0.01 26.6 14.1 35 132-166 243-277 (413)
470 KOG2659 LisH motif-containing 36.3 3.3E+02 0.0072 24.7 9.2 94 446-542 23-128 (228)
471 KOG2062 26S proteasome regulat 35.5 6.2E+02 0.013 27.6 26.1 265 291-564 367-655 (929)
472 KOG0991 Replication factor C, 35.5 3.5E+02 0.0076 24.8 13.1 145 389-559 136-280 (333)
473 PRK11639 zinc uptake transcrip 35.4 1.6E+02 0.0034 25.4 6.7 66 32-101 12-77 (169)
474 PRK12357 glutaminase; Reviewed 35.0 1.5E+02 0.0032 28.6 6.9 48 12-62 69-119 (326)
475 PRK12356 glutaminase; Reviewed 35.0 1.2E+02 0.0026 29.2 6.3 48 12-62 65-114 (319)
476 KOG2659 LisH motif-containing 34.9 3E+02 0.0065 25.0 8.3 21 355-375 71-91 (228)
477 PF04762 IKI3: IKI3 family; I 34.9 7.6E+02 0.016 28.4 14.5 29 384-412 813-843 (928)
478 COG5187 RPN7 26S proteasome re 34.5 4.1E+02 0.0088 25.2 9.3 25 450-474 116-140 (412)
479 PRK07003 DNA polymerase III su 34.4 4.6E+02 0.01 29.1 11.0 55 17-76 163-225 (830)
480 PF11817 Foie-gras_1: Foie gra 34.1 1.4E+02 0.0029 27.8 6.6 17 459-475 188-204 (247)
481 PF04910 Tcf25: Transcriptiona 34.1 4.8E+02 0.01 25.9 18.2 30 380-409 37-66 (360)
482 KOG2034 Vacuolar sorting prote 33.7 7.2E+02 0.016 27.8 23.2 50 258-307 366-415 (911)
483 KOG3824 Huntingtin interacting 33.4 63 0.0014 30.4 4.0 55 459-516 126-182 (472)
484 cd08332 CARD_CASP2 Caspase act 33.3 89 0.0019 23.5 4.3 47 281-327 34-80 (90)
485 KOG0545 Aryl-hydrocarbon recep 33.2 3.2E+02 0.007 25.2 8.1 67 487-553 232-300 (329)
486 PF09670 Cas_Cas02710: CRISPR- 33.1 3.7E+02 0.0081 26.9 9.9 55 93-148 140-198 (379)
487 KOG4814 Uncharacterized conser 33.1 4E+02 0.0087 28.4 9.8 86 495-580 364-457 (872)
488 COG2178 Predicted RNA-binding 33.0 3.4E+02 0.0075 23.9 8.3 19 561-579 131-149 (204)
489 PF10475 DUF2450: Protein of u 32.8 1.1E+02 0.0024 29.3 5.9 52 160-213 104-155 (291)
490 COG0790 FOG: TPR repeat, SEL1 32.7 4.4E+02 0.0094 25.0 18.3 79 429-511 128-217 (292)
491 PF10255 Paf67: RNA polymerase 32.4 2.7E+02 0.0058 28.0 8.5 55 387-441 126-191 (404)
492 PRK14951 DNA polymerase III su 32.1 2.4E+02 0.0052 30.4 8.7 110 16-153 167-284 (618)
493 PF10516 SHNi-TPR: SHNi-TPR; 32.1 90 0.002 18.9 3.3 28 552-579 2-29 (38)
494 COG4941 Predicted RNA polymera 31.8 4.9E+02 0.011 25.3 11.8 118 430-552 272-400 (415)
495 PF09477 Type_III_YscG: Bacter 31.1 2.6E+02 0.0056 21.9 9.6 79 363-444 21-99 (116)
496 PRK13342 recombination factor 29.8 6.1E+02 0.013 25.8 15.1 43 417-459 230-275 (413)
497 PF13934 ELYS: Nuclear pore co 29.7 4.4E+02 0.0094 24.1 12.5 94 166-262 90-184 (226)
498 COG5108 RPO41 Mitochondrial DN 29.7 3.5E+02 0.0077 28.9 8.9 23 255-277 33-55 (1117)
499 cd07153 Fur_like Ferric uptake 29.7 1.3E+02 0.0028 23.7 5.1 44 90-133 6-49 (116)
500 PF13646 HEAT_2: HEAT repeats; 29.2 2.3E+02 0.0049 20.6 7.0 17 152-168 43-59 (88)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.8e-85 Score=717.95 Aligned_cols=601 Identities=31% Similarity=0.580 Sum_probs=565.2
Q ss_pred hhHHHHHHhccCchHHHHHHHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHH
Q 047120 15 QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTY 94 (634)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 94 (634)
..++..+...+.+..+.+++.++++.|..+++.++|.||.+|+++|+. ..|+++|++|+ +||..+||.+|.+|
T Consensus 90 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~---~~A~~~f~~m~----~~d~~~~n~li~~~ 162 (857)
T PLN03077 90 VALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGEL---VHAWYVFGKMP----ERDLFSWNVLVGGY 162 (857)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCCh---HHHHHHHhcCC----CCCeeEHHHHHHHH
Confidence 333344444455666778888888888888888999999999999998 99999999997 68999999999999
Q ss_pred HcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHH
Q 047120 95 SHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFAR 174 (634)
Q Consensus 95 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 174 (634)
++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..++++|+.+|++.|+++.|.
T Consensus 163 ~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 242 (857)
T PLN03077 163 AKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSAR 242 (857)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccC--C-----------------------------------CC
Q 047120 175 QLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--E-----------------------------------RN 217 (634)
Q Consensus 175 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~-----------------------------------p~ 217 (634)
++|++|+.+|..+||++|.+|++.|++++|+++|.+|... . ||
T Consensus 243 ~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d 322 (857)
T PLN03077 243 LVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322 (857)
T ss_pred HHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc
Confidence 9999999999999999999999999999999999999764 3 45
Q ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCC-------------------
Q 047120 218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK------------------- 278 (634)
Q Consensus 218 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------- 278 (634)
..+|+.++.+|++.|+ ++.|.++|++|..||..+|+.++.+|.+.|++++|+++|++|.+
T Consensus 323 ~~~~n~Li~~y~k~g~-~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~ 401 (857)
T PLN03077 323 VSVCNSLIQMYLSLGS-WGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401 (857)
T ss_pred hHHHHHHHHHHHhcCC-HHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhc
Confidence 6667777777888888 99999999999999999999999999999999999999998842
Q ss_pred --------------------CChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHH
Q 047120 279 --------------------RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM 338 (634)
Q Consensus 279 --------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 338 (634)
++..+++.|+++|+++|++++|.++|++|.++|..+|+.++.+|++.|+.++|+.+|++|
T Consensus 402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 456677889999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHH
Q 047120 339 QCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWN 418 (634)
Q Consensus 339 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 418 (634)
.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++++++|+++|++++|.++|+.+ .+|..+||
T Consensus 482 ~~--~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n 558 (857)
T PLN03077 482 LL--TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWN 558 (857)
T ss_pred Hh--CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHH
Confidence 84 5899999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhcc
Q 047120 419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498 (634)
Q Consensus 419 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 498 (634)
++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|++++++|++.
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~ 638 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999996689999999999999999999
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120 499 GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578 (634)
Q Consensus 499 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 578 (634)
|++++|.+++++|+++||..+|++|+.+|...|+.+.++...+++++++|+++..|..|+++|...|+|++|.++.+.|+
T Consensus 639 G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 639 GKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCccCCceeEEEEcCEEEEEEeCCCCCcchhHHHHHHH--------hcccCccc
Q 047120 579 ERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLD--------NMWTPDSV 626 (634)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 626 (634)
+.|+++.||+||+++.+.+|.|+.++++||+..+.|.+++ .++.||..
T Consensus 719 ~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~ 774 (857)
T PLN03077 719 ENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSES 774 (857)
T ss_pred HcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcc
Confidence 9999999999999999999999999999999999887555 36778743
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.6e-74 Score=615.53 Aligned_cols=518 Identities=29% Similarity=0.497 Sum_probs=483.3
Q ss_pred CCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCC-CCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHH
Q 047120 80 EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNG-VSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQN 158 (634)
Q Consensus 80 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 158 (634)
..++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++.+.+.+++..|.+.|+.||..+++
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 35677899999999999999999999999999864 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccC--CCChhHHHHHHHHHHhcCCcHH
Q 047120 159 CLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQ 236 (634)
Q Consensus 159 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~p~~~~~~~ll~~~~~~~~~~~ 236 (634)
.|+.+|++.|+++.|.++|++|++||..+||++|.+|++.|++++|+++|++|... .|+..+|+.++.+++..+. .+
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~-~~ 241 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS-AR 241 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc-HH
Confidence 99999999999999999999999999999999999999999999999999999765 5666677776666666665 55
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHH
Q 047120 237 FAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316 (634)
Q Consensus 237 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 316 (634)
.+.+++..+. +.-..+|..++++|+++|+++|++++|.++|++|.++|+.+||
T Consensus 242 ~~~~l~~~~~---------------------------~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n 294 (697)
T PLN03081 242 AGQQLHCCVL---------------------------KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWN 294 (697)
T ss_pred HHHHHHHHHH---------------------------HhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHH
Confidence 5554332211 1112378889999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047120 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC 396 (634)
Q Consensus 317 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 396 (634)
.++.+|++.|+.++|+++|++|... |+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..++++|+++|+++
T Consensus 295 ~li~~y~~~g~~~eA~~lf~~M~~~-g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 295 SMLAGYALHGYSEEALCLYYEMRDS-GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence 9999999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 047120 397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476 (634)
Q Consensus 397 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 476 (634)
|++++|.++|++|.++|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.
T Consensus 374 G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 374 GRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred CCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHH
Q 047120 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556 (634)
Q Consensus 477 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 556 (634)
+.+|+.|+..+|+.++++|++.|++++|.+++++|+..|+..+|++|+.+|...|+++.|+.+++++++.+|.++..|..
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~ 533 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVV 533 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHH
Confidence 87899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhCCCccCCceeEEEEcCEEEEEEeCCCCCcchhHHHHHH--------HhcccCccc
Q 047120 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYML--------DNMWTPDSV 626 (634)
Q Consensus 557 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 626 (634)
|+++|.+.|+|++|.++++.|++.|+++.||+||+++.+.+|.|++++..||+..+.+.++ +.++.||..
T Consensus 534 L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999988877644 446888854
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.7e-71 Score=606.64 Aligned_cols=563 Identities=23% Similarity=0.326 Sum_probs=523.3
Q ss_pred CCCCChhhHHHHHHhccCchHHHHHHHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHH
Q 047120 9 QPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWN 88 (634)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 88 (634)
++....+.++..+.+++.+.++..++..|.+.|++|+..+|..++.++.+.+.. ..|.+++..+.+.+..++...+|
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAV---EEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCH---HHHHHHHHHHHHcCCCCCchHHH
Confidence 334556788888999999999999999999999999999999999999999888 99999999999888889999999
Q ss_pred HHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 047120 89 AIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCG 168 (634)
Q Consensus 89 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 168 (634)
.+|..|++.|+.+.|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++++|++.+
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 999999999999999999999975 8999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhCC----CCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhh
Q 047120 169 YLEFARQLFDKMG----IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEK 244 (634)
Q Consensus 169 ~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 244 (634)
+++.+.+++..|. .+|..+||+||.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|. .++|.++|++
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~-~~eAl~lf~~ 278 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGE-CLEGLELFFT 278 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCC-HHHHHHHHHH
Confidence 9999999998875 47999999999999999999999999999986 899999999999999999 9999999999
Q ss_pred CCC----CCchHHHHHHHHHHhcCChHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHH
Q 047120 245 MPE----RDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN 316 (634)
Q Consensus 245 ~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 316 (634)
|.. ||..||+.++.+|.+.|+.+.|.+++..|.+ ||..+|++|+.+|++.|++++|.++|++|.++|..+|+
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n 358 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWT 358 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHH
Confidence 965 9999999999999999999999999999974 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047120 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC 396 (634)
Q Consensus 317 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 396 (634)
.++.+|++.|++++|+++|++|... |+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+++.++++|++.
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~-g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQD-NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh-CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 9999999999999999999999988 899999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 047120 397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476 (634)
Q Consensus 397 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 476 (634)
|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.
T Consensus 438 g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 438 KCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred CCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 599999999999999999999999999999998
Q ss_pred HhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC-CCCCchHH
Q 047120 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD-SSNSSSYV 555 (634)
Q Consensus 477 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~ 555 (634)
+ .|+.++..++++|+++|+++|++++|.++|+++ .||..+|++++.+|.+.|+.++|.++|++|.+.+ .++..+|.
T Consensus 517 ~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 593 (857)
T PLN03077 517 R-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593 (857)
T ss_pred H-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence 8 788888888888888888888888888888887 6788888888888888888888888888887765 45677788
Q ss_pred HHHHHHhcCCCchHHHHHHHHHH-hCCCccCC
Q 047120 556 LLSNMFAGLGMWNDARRVRSMMK-ERNLKKLP 586 (634)
Q Consensus 556 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~ 586 (634)
.++.+|.+.|++++|.++|+.|. +.|+.++.
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 88888888888888888888887 56775543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.3e-63 Score=531.30 Aligned_cols=508 Identities=17% Similarity=0.220 Sum_probs=377.4
Q ss_pred CCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCC-CCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcc
Q 047120 42 FIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFRE-KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKF 120 (634)
Q Consensus 42 ~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 120 (634)
-.++...|..++..+++.|++ ++|.++|++|...+. .++..+++.++.+|.+.|..++|+.+|+.|.. ||..
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l---~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~ 438 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRI---KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLS 438 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCH---HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHH
Confidence 345677888888888888988 899999999987764 46777788888889999999999999888875 8889
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhHHHHHHHHHH
Q 047120 121 SASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG----IRDSVSYNSMIDGYV 196 (634)
Q Consensus 121 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~ 196 (634)
+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+.||.+|+
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999887 478889999999999
Q ss_pred hCCChHHHHHHHhhCccC--CCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHh
Q 047120 197 KSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFD 274 (634)
Q Consensus 197 ~~g~~~~A~~~~~~m~~~--~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 274 (634)
+.|++++|+++|++|... .||..+|+.+|.+|++.|+ +++|.++|++|....
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~-~deA~~lf~eM~~~~------------------------- 572 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA-VDRAFDVLAEMKAET------------------------- 572 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhc-------------------------
Confidence 999999998888888654 5666666666666666555 555555555542100
Q ss_pred hCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCC----CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhH
Q 047120 275 KMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK----RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350 (634)
Q Consensus 275 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~ 350 (634)
.-..||..+|++++.+|++.|++++|.++|+.|.+ ++..+|+.+|.+|++.|++++|.++|++|... |+.||..+
T Consensus 573 ~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~T 651 (1060)
T PLN03218 573 HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVF 651 (1060)
T ss_pred CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHH
Confidence 00125556666666666666666666666666653 45566777777777777777777777777666 66777777
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc----CCChhHHHHHHHHHHH
Q 047120 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE----DGSVDHWNAMINGLAI 426 (634)
Q Consensus 351 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~ 426 (634)
|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.||.+|++
T Consensus 652 ynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777663 4666677777777777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc---------
Q 047120 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR--------- 497 (634)
Q Consensus 427 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------- 497 (634)
.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+ .|+.||..+|++++..+.+
T Consensus 732 ~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~ 810 (1060)
T PLN03218 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALG 810 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 777777777777777777777777777777777777777777777777766 5677777777766654321
Q ss_pred --------------cCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc-CCCCCchHHHHHH
Q 047120 498 --------------AGHIEAARNLIEDM---PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM-DSSNSSSYVLLSN 559 (634)
Q Consensus 498 --------------~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~ 559 (634)
.+..++|..+|++| ++.||..||+.++.+++..+..+.+..+++.+... .+++..+|..|++
T Consensus 811 ~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~ 890 (1060)
T PLN03218 811 EPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVD 890 (1060)
T ss_pred hhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHH
Confidence 12346789999998 78899999999997777888888888888776533 3566778899998
Q ss_pred HHhcCCCchHHHHHHHHHHhCCCccCC
Q 047120 560 MFAGLGMWNDARRVRSMMKERNLKKLP 586 (634)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~~~~~~~ 586 (634)
.+.+. .++|..++++|.+.|+.+..
T Consensus 891 g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 891 GFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred hhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 87322 36899999999999997654
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.1e-62 Score=524.33 Aligned_cols=493 Identities=15% Similarity=0.186 Sum_probs=405.7
Q ss_pred ChhhHHHHHHhccCchHHHHHHHHHHHhCC-CCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHH
Q 047120 13 STQSTLLLLRKCKTLNDVNQIHARMITTGF-IKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91 (634)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li 91 (634)
....+...|.+++++.++.++++.|.+.|+ +++...++.++..|.+.|.. ++|..+|..|. .||..+||.+|
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~---~eAl~lf~~M~----~pd~~Tyn~LL 444 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAV---KEAFRFAKLIR----NPTLSTFNMLM 444 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCH---HHHHHHHHHcC----CCCHHHHHHHH
Confidence 344555556677999999999999999996 56778889999999999998 99999999997 49999999999
Q ss_pred HHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHH
Q 047120 92 KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLE 171 (634)
Q Consensus 92 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 171 (634)
.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCC----CCChhHHHHHHHHHHhCCChHHHHHHHhhCccC----CCChhHHHHHHHHHHhcCCcHHHHHHHHh
Q 047120 172 FARQLFDKMG----IRDSVSYNSMIDGYVKSGNIESARELFDSMPIR----ERNLISWNSVLNGYAQLKSGLQFAWQIFE 243 (634)
Q Consensus 172 ~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~p~~~~~~~ll~~~~~~~~~~~~a~~~~~ 243 (634)
+|.++|++|. .||..+|+.||.+|++.|++++|.++|++|... .||..+|+.++.+|++.|+ +++|.++|+
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~-ldeA~elf~ 603 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ-VDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC-HHHHHHHHH
Confidence 9999999995 489999999999999999999999999999752 7899999999999999998 999999999
Q ss_pred hCCC----CCchHHHHHHHHHHhcCChHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHhhhCCC----CC
Q 047120 244 KMPE----RDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMPK----RD 311 (634)
Q Consensus 244 ~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 311 (634)
.|.+ |+..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.++++|++.|++++|.++|+.|.+ +|
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 8876 6778888888888888888888888888863 7888888888888888888888888888864 67
Q ss_pred hhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047120 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALID 391 (634)
Q Consensus 312 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 391 (634)
..+|+.+|.+|++.|++++|.++|++|... |+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++.
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 788888888888888888888888888776 7888888888888888888888888888888888888888888888888
Q ss_pred HhHhcCCHHHHHHHHHhcc----CCChhHHHHHHHHHHH----c-------------------CChHHHHHHHHHHHHCC
Q 047120 392 MYSKCGSIENAIKVFEQIE----DGSVDHWNAMINGLAI----H-------------------GLGELAFDLLMEMERLS 444 (634)
Q Consensus 392 ~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~----~-------------------~~~~~A~~~~~~m~~~g 444 (634)
+|++.|++++|.++|+.|. .+|..+|+.++..|.+ . +..++|..+|++|.+.|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence 8888888888888888876 4677788888765432 1 11245666666666666
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC---CCCCCH
Q 047120 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM---PMEPND 517 (634)
Q Consensus 445 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~ 517 (634)
+.||..||+.++.++++.+..+.+..+++.+.. .+..|+..+|+++++++.+. .++|..++++| ++.|+.
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 666666666666555555566666555555544 34455555666666655322 24566666665 444443
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.9e-58 Score=493.13 Aligned_cols=457 Identities=21% Similarity=0.311 Sum_probs=427.3
Q ss_pred ChhhHHHHHHhccCchHHHHHHHHHHHhC-CCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHH
Q 047120 13 STQSTLLLLRKCKTLNDVNQIHARMITTG-FIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAII 91 (634)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li 91 (634)
+++..+..+...++..++.+++..|...+ +.|+..+|+.++.++++.++. +.|.+++..|.+.|..||..+||.++
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~---~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSI---RCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 67777788888899999999999998864 789999999999999999998 99999999999999999999999999
Q ss_pred HHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHH
Q 047120 92 KTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLE 171 (634)
Q Consensus 92 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 171 (634)
..|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|+.+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 999999999999999999975 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCC----CCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC
Q 047120 172 FARQLFDKMG----IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247 (634)
Q Consensus 172 ~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 247 (634)
.+.+++..+. .+|..+||+||.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+ .++|.++|++|.+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~~~vt~n~li~~y~~~g~-~~eA~~lf~~M~~ 318 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--KTTVAWNSMLAGYALHGY-SEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC--CChhHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 9999987764 36889999999999999999999999999976 799999999999999999 9999999999854
Q ss_pred ----CCchHHHHHHHHHHhcCChHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHH
Q 047120 248 ----RDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM 319 (634)
Q Consensus 248 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 319 (634)
||..||+.++.+|++.|++++|.+++..|.+ +|..++++|+++|+++|++++|.++|++|.++|..+||.||
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI 398 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALI 398 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHH
Confidence 8999999999999999999999999999874 88999999999999999999999999999999999999999
Q ss_pred HHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHH-cCCCCchhHHHHHHHHhHhcCC
Q 047120 320 GGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK-DQFSLNGKHGVALIDMYSKCGS 398 (634)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~ 398 (634)
.+|++.|+.++|+++|++|... |+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|+
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~ 477 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL 477 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC
Confidence 9999999999999999999988 9999999999999999999999999999999986 6999999999999999999999
Q ss_pred HHHHHHHHHhcc-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 047120 399 IENAIKVFEQIE-DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMR 476 (634)
Q Consensus 399 ~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 476 (634)
+++|.++++++. .|+..+|++|+.+|...|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.
T Consensus 478 ~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 478 LDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999997 78999999999999999999999999999974 5665 5699999999999999999999999999
Q ss_pred HhcCccc
Q 047120 477 RIHKLEP 483 (634)
Q Consensus 477 ~~~~~~~ 483 (634)
+ .|+..
T Consensus 556 ~-~g~~k 561 (697)
T PLN03081 556 R-KGLSM 561 (697)
T ss_pred H-cCCcc
Confidence 8 57643
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.5e-33 Score=316.33 Aligned_cols=550 Identities=13% Similarity=0.046 Sum_probs=356.6
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHc
Q 047120 17 TLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSH 96 (634)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 96 (634)
....+...++...+...+....+.. +.+..++..+...+.+.|+. .+|...++.+....+ .+...|+.+...+.+
T Consensus 301 ~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 375 (899)
T TIGR02917 301 AGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRV---DEAIATLSPALGLDP-DDPAALSLLGEAYLA 375 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCH---HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 3344555677777777777766653 34456667777777777777 777777777664432 355667777777778
Q ss_pred CCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 047120 97 GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQL 176 (634)
Q Consensus 97 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 176 (634)
.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.... +......++..+.+.|++++|.++
T Consensus 376 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 453 (899)
T TIGR02917 376 LGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAA 453 (899)
T ss_pred CCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHH
Confidence 888888888887777632 223344556666667777777777777777765432 233445566677777777777777
Q ss_pred HhhCCC---CChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCC-hhHHHHHHHHHHhcCCcHHHHHHHHhhCCC---CC
Q 047120 177 FDKMGI---RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN-LISWNSVLNGYAQLKSGLQFAWQIFEKMPE---RD 249 (634)
Q Consensus 177 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~~ 249 (634)
++.+.. .+..+|..+...+...|++++|.+.|+++....|+ ...+..+...+...|+ .++|...++++.. .+
T Consensus 454 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~ 532 (899)
T TIGR02917 454 AKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN-PDDAIQRFEKVLTIDPKN 532 (899)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCcCc
Confidence 776643 24556777777777777777777777776655333 3445555666666666 7777777776654 34
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHhhhCCC---CChhhHHHHHHHHH
Q 047120 250 LISWNSMLHGCVKCGKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVDIARRLFDEMPK---RDVVACNAMMGGYV 323 (634)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 323 (634)
..++..+...+.+.|+.++|..+++++.+ .+...+..++..|.+.|++++|..+++.+.+ .+...|..++.++.
T Consensus 533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45666666777777777777777776643 3345566666777777777777777766653 34556677777777
Q ss_pred HcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 047120 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAI 403 (634)
Q Consensus 324 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 403 (634)
..|++++|+..|+++.... +.+...+..+...+...|++++|..+++.+.+.. +.+...+..++..+...|++++|.
T Consensus 613 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 689 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAK 689 (899)
T ss_pred HcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777776431 2234456666666667777777777777666543 334566666677777777777777
Q ss_pred HHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 047120 404 KVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480 (634)
Q Consensus 404 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 480 (634)
.+++.+.+ .+...+..+...+...|++++|.+.|+++... .|+..++..++.++.+.|++++|.+.++.+.+.
T Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-- 765 (899)
T TIGR02917 690 KIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-- 765 (899)
T ss_pred HHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 77766652 34455666666667777777777777776654 344455666666666777777777776666652
Q ss_pred cccChhHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHH
Q 047120 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558 (634)
Q Consensus 481 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 558 (634)
.+.+...+..++..|.+.|++++|.+.|+++ ..+++...+..++..+...|+ .+|+..++++++..|.++..+..++
T Consensus 766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~ 844 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLG 844 (899)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 2344556666666677777777777777665 223345566666666666666 6666666666666666666666666
Q ss_pred HHHhcCCCchHHHHHHHHHHhCCC
Q 047120 559 NMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
.++...|++++|.++++++.+.+.
T Consensus 845 ~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 845 WLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 666666666666666666666544
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1e-32 Score=311.45 Aligned_cols=548 Identities=13% Similarity=0.078 Sum_probs=376.4
Q ss_pred hhHHHHHHhccCchHHHHHHHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHH
Q 047120 15 QSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTY 94 (634)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 94 (634)
..+...+...++...+......+.+.. +.+..+++.+...+.+.|++ ++|.+.|+++....+ .+...|..+...+
T Consensus 333 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 407 (899)
T TIGR02917 333 RLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDF---EKAAEYLAKATELDP-ENAAARTQLGISK 407 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 344444556666666666666666543 34556677777777777777 777777777664432 2455666777777
Q ss_pred HcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHH
Q 047120 95 SHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFAR 174 (634)
Q Consensus 95 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 174 (634)
...|++++|++.|+.+.+... .+......++..+.+.|++++|..+++.+.+.. +.++.++..+...|...|++++|.
T Consensus 408 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 485 (899)
T TIGR02917 408 LSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAR 485 (899)
T ss_pred HhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHH
Confidence 777777777777777776431 122344555666777777777777777776643 345667777777777777777777
Q ss_pred HHHhhCCC---CChhHHHHHHHHHHhCCChHHHHHHHhhCccCCC-ChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC---
Q 047120 175 QLFDKMGI---RDSVSYNSMIDGYVKSGNIESARELFDSMPIRER-NLISWNSVLNGYAQLKSGLQFAWQIFEKMPE--- 247 (634)
Q Consensus 175 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--- 247 (634)
+.|+++.+ .+...+..+...+...|++++|.+.++++....| +..++..+...+.+.|+ .++|...++++..
T Consensus 486 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~ 564 (899)
T TIGR02917 486 EAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGN-EEEAVAWLEKAAELNP 564 (899)
T ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCc
Confidence 77776542 2445666677777777777777777777766533 44566666667777776 7777777777654
Q ss_pred CCchHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHhhhCCC---CChhhHHHHHHH
Q 047120 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVDIARRLFDEMPK---RDVVACNAMMGG 321 (634)
Q Consensus 248 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 321 (634)
.+...+..++..+...|++++|..+++.+.+ .+...|..+...|...|++++|...|+.+.+ .+...+..+...
T Consensus 565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 644 (899)
T TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADA 644 (899)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3445566677777777777777777777653 4556777777777777777777777776643 345567777777
Q ss_pred HHHcCCchHHHHHHHHHHhcCCCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHH
Q 047120 322 YVRNGYSMKALEIFDNMQCELYLHP-DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE 400 (634)
Q Consensus 322 ~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 400 (634)
+...|++++|...|+++... .| +..++..+...+...|++++|..+++.+.+.. +.+...+..+...+...|+++
T Consensus 645 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 720 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALEL---KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYP 720 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHH
Confidence 77777777777777777643 34 35667777777777777777777777777654 445566667777777777777
Q ss_pred HHHHHHHhcc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 047120 401 NAIKVFEQIE--DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRI 478 (634)
Q Consensus 401 ~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 478 (634)
+|.+.|+.+. .++..++..++.++...|++++|.+.++++.+.. +.+...+..+...|...|++++|..+|+.+.+.
T Consensus 721 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 721 AAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 7777777765 3444566667777777777777777777777642 334557777777777777777777777777662
Q ss_pred cCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHH
Q 047120 479 HKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556 (634)
Q Consensus 479 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 556 (634)
.+++...++.++..+...|+ .+|+..++++ ...| +..++..+...+...|++++|...++++++.+|.++.++..
T Consensus 800 --~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 876 (899)
T TIGR02917 800 --APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYH 876 (899)
T ss_pred --CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence 23456667777777777777 6677777766 3333 34566667777777777777777777777777777777777
Q ss_pred HHHHHhcCCCchHHHHHHHHHH
Q 047120 557 LSNMFAGLGMWNDARRVRSMMK 578 (634)
Q Consensus 557 l~~~~~~~g~~~~A~~~~~~~~ 578 (634)
++.+|.+.|++++|.+++++|.
T Consensus 877 l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 877 LALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHh
Confidence 7777777777777777777764
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.8e-24 Score=244.38 Aligned_cols=537 Identities=13% Similarity=0.036 Sum_probs=317.6
Q ss_pred ccCchHHHHHHHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccH----------------
Q 047120 24 CKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLW---------------- 87 (634)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---------------- 87 (634)
-++.+.+.+.+.++.... +-++.++..+++.+.+.|+. ++|.+.++++.+..+. +...+
T Consensus 41 ~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~---~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~~~~ 115 (1157)
T PRK11447 41 THREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDS---DGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEGRQA 115 (1157)
T ss_pred hCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCchhhH
Confidence 344555566666665432 33667788888888888988 8888888888755422 22221
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcch-HHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 047120 88 NAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFS-ASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVR 166 (634)
Q Consensus 88 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 166 (634)
..+...+.+.|++++|+..|+.+.+.+ +|+... ...........|+.++|.+.++++.+..+ -+...+..+...+..
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNTLALLLFS 193 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHc
Confidence 223346778889999999998888643 333221 11111222345788888888888888653 355667778888888
Q ss_pred cCCHHHHHHHHhhCCCCCh------hH-----------------HH----------------------------------
Q 047120 167 CGYLEFARQLFDKMGIRDS------VS-----------------YN---------------------------------- 189 (634)
Q Consensus 167 ~g~~~~A~~~~~~~~~~~~------~~-----------------~~---------------------------------- 189 (634)
.|+.++|+..++++...+. .. +.
T Consensus 194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~ 273 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR 273 (1157)
T ss_pred cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence 8888888888877532100 00 00
Q ss_pred HHHHHHHhCCChHHHHHHHhhCccCCC-ChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC--CCc---hHHH---------
Q 047120 190 SMIDGYVKSGNIESARELFDSMPIRER-NLISWNSVLNGYAQLKSGLQFAWQIFEKMPE--RDL---ISWN--------- 254 (634)
Q Consensus 190 ~li~~~~~~g~~~~A~~~~~~m~~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~~~---~~~~--------- 254 (634)
.....+...|++++|+..|++.....| +...+..+...+.+.++ .++|...|++..+ |+. ..|.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~-~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGD-RARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 112345566777777777777766645 44556666666777777 7777777777655 221 1111
Q ss_pred ---HHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHhhhCCC--C-ChhhHHHHHHH----
Q 047120 255 ---SMLHGCVKCGKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVDIARRLFDEMPK--R-DVVACNAMMGG---- 321 (634)
Q Consensus 255 ---~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~---- 321 (634)
.....+.+.|++++|...|+++.+ .+...+..+...+...|++++|++.|+++.+ | +...+..+...
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 113345667777777777777654 3445566677777777777777777776653 2 22233333322
Q ss_pred --------------------------------------HHHcCCchHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHHccC
Q 047120 322 --------------------------------------YVRNGYSMKALEIFDNMQCELYLHPD-DASLVIVLSAIAQLG 362 (634)
Q Consensus 322 --------------------------------------~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~ 362 (634)
+...|++++|++.|++..+. .|+ ...+..+...+.+.|
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~---~P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL---DPGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 33445555555555555422 332 233444444555555
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCC----Chh---------HHHHHHHHHHHcCC
Q 047120 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG----SVD---------HWNAMINGLAIHGL 429 (634)
Q Consensus 363 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~---------~~~~li~~~~~~~~ 429 (634)
++++|...++.+.+.. +.++..+..+...+...++.++|+..++.+... +.. .+..+...+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 5555555555554432 223333333333444455555555555554321 000 11223444555666
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHH
Q 047120 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE 509 (634)
Q Consensus 430 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 509 (634)
.++|..+++ . ..++...+..+...+.+.|++++|+..|+.+.+. -+.+...+..++..|...|++++|++.++
T Consensus 589 ~~eA~~~l~---~--~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 589 EAEAEALLR---Q--QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHHHHHHHH---h--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666554 1 1233445566667777777777777777777663 13345666777777777777777777777
Q ss_pred hC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc------hHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 510 DM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS------SYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 510 ~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
.+ ...|+ ...+..+..++...|++++|..+++++++..|.++. .+..++.++...|++++|++.+++...
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66 33443 445556666677777777777777777776654433 455567777777777777777777754
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=4e-24 Score=241.47 Aligned_cols=517 Identities=12% Similarity=0.018 Sum_probs=370.0
Q ss_pred HHHHhccCchHHHHHHHHHHHhCCCCchhhhhHHHHH-hhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcC
Q 047120 19 LLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVAS-FSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHG 97 (634)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 97 (634)
.++..-++.+++.+.++.+.+.. +|+......+... ....|+. ++|...|+++....+. +...+..+...+...
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~---~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQR---PEAINQLQRLNADYPG-NTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHcc
Confidence 35677788999999998888653 4443322222222 2234776 8999999998866433 567788899999999
Q ss_pred CCcchHHHHHHHHHHCCC------------------C--------------CCcchHH---------------------H
Q 047120 98 LDPKEALVMFCLMLDNGV------------------S--------------VDKFSAS---------------------L 124 (634)
Q Consensus 98 g~~~~A~~~~~~m~~~g~------------------~--------------p~~~~~~---------------------~ 124 (634)
|+.++|+..++++.+... . |+...+. .
T Consensus 195 g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~ 274 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARA 274 (1157)
T ss_pred CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHH
Confidence 999999999998765320 0 1100000 1
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh---hHHH----------
Q 047120 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI--RDS---VSYN---------- 189 (634)
Q Consensus 125 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~---------- 189 (634)
....+...|++++|...++++++... .+...+..+...|.+.|++++|+..|++..+ |+. ..|.
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 12234466788888888888877542 2566777777888888888888888877643 211 1121
Q ss_pred --HHHHHHHhCCChHHHHHHHhhCccCCCC-hhHHHHHHHHHHhcCCcHHHHHHHHhhCCC--C-CchHHHHHHHHHHhc
Q 047120 190 --SMIDGYVKSGNIESARELFDSMPIRERN-LISWNSVLNGYAQLKSGLQFAWQIFEKMPE--R-DLISWNSMLHGCVKC 263 (634)
Q Consensus 190 --~li~~~~~~g~~~~A~~~~~~m~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~ 263 (634)
.....+.+.|++++|++.|+++....|+ ...+..+...+...|+ .++|.+.|++..+ | +...+..+...+. .
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~-~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD-YAAAERYYQQALRMDPGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-h
Confidence 1234566788888888888888777554 3445556667777777 8888888888765 3 3344555555553 4
Q ss_pred CChHHHHHHHhhCCCCC------------hhHHHHHHHHHHHcCChHHHHHHhhhCCC--C-ChhhHHHHHHHHHHcCCc
Q 047120 264 GKMDDAQALFDKMPKRD------------VVSWANMIDGYAKLGRVDIARRLFDEMPK--R-DVVACNAMMGGYVRNGYS 328 (634)
Q Consensus 264 g~~~~A~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~ 328 (634)
++.++|..+++.+.... ...+..+...+...|++++|++.|++..+ | +...+..+...|.+.|++
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 56788888877665321 12344566778889999999999998875 3 556788889999999999
Q ss_pred hHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchh---------HHHHHHHHhHhcCC
Q 047120 329 MKALEIFDNMQCELYLHPD-DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK---------HGVALIDMYSKCGS 398 (634)
Q Consensus 329 ~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~ 398 (634)
++|+..++++... .|+ ...+..+...+...++.++|...++.+......++.. .+..+...+...|+
T Consensus 512 ~~A~~~l~~al~~---~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 512 SQADALMRRLAQQ---KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999854 453 3344444455678899999999998865433322221 22345677889999
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047120 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRR 477 (634)
Q Consensus 399 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 477 (634)
.++|.++++. ...++..+..+...+.+.|++++|++.|++..+. .|+ ...+..++..+...|++++|++.++.+.+
T Consensus 589 ~~eA~~~l~~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 589 EAEAEALLRQ-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHHHHh-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 9999999984 3446667888999999999999999999999986 555 66889999999999999999999998875
Q ss_pred hcCccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-------CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047120 478 IHKLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-------NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548 (634)
Q Consensus 478 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 548 (634)
. .| +...+..+..++...|++++|.++++++ ...| +...+..+...+...|+.++|+..|++++....
T Consensus 666 ~---~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~ 742 (1157)
T PRK11447 666 T---ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASG 742 (1157)
T ss_pred c---CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Confidence 2 33 4556777888999999999999999987 2222 224566677888999999999999999987665
Q ss_pred CCCc
Q 047120 549 SNSS 552 (634)
Q Consensus 549 ~~~~ 552 (634)
..|.
T Consensus 743 ~~~~ 746 (1157)
T PRK11447 743 ITPT 746 (1157)
T ss_pred CCCC
Confidence 5544
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.2e-21 Score=211.22 Aligned_cols=227 Identities=13% Similarity=0.021 Sum_probs=180.4
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHH
Q 047120 348 DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED--GSVDHWNAMINGLA 425 (634)
Q Consensus 348 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 425 (634)
...+..+..++.. ++.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+...+.
T Consensus 477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all 553 (987)
T PRK09782 477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQ 553 (987)
T ss_pred HHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Confidence 4455555555555 78888888777766543 4544444455666789999999999987763 44456677788889
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHH
Q 047120 426 IHGLGELAFDLLMEMERLSIEPDD-ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504 (634)
Q Consensus 426 ~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 504 (634)
+.|++++|...+++..+. .|+. ..+..+.......|++++|...++.+.+. .|+...|..+..++.+.|++++|
T Consensus 554 ~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999875 3543 34444444555679999999999999863 56778899999999999999999
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 505 RNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 505 ~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
+..+++. ...|+ ...+..+..++...|++++|+..++++++.+|.++..+..++.++...|++++|...+++..+...
T Consensus 629 ~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 629 VSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999988 55665 557778888899999999999999999999999999999999999999999999999999976643
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=2.4e-20 Score=201.28 Aligned_cols=535 Identities=11% Similarity=0.018 Sum_probs=369.1
Q ss_pred cCchHHHHHHHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHH
Q 047120 25 KTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEAL 104 (634)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 104 (634)
++...+...+++.++.. +-++.++..|.+.|.+.|++ ++|+..+++..+.. |+-..|..++..+ +++++|.
T Consensus 58 Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~---~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 58 NDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHD---DRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHH
Confidence 66666777777776554 33456777777888888887 77877777766543 3333333333333 6677777
Q ss_pred HHHHHHHHCCCCCCc----------------------------------------chHHHH-HHHHhccCChHHHHHHHH
Q 047120 105 VMFCLMLDNGVSVDK----------------------------------------FSASLV-LKACSRLGLIEEGLQIHG 143 (634)
Q Consensus 105 ~~~~~m~~~g~~p~~----------------------------------------~~~~~l-l~~~~~~~~~~~a~~~~~ 143 (634)
.+++++.+.. |+. ...... .+.+.+.+++++|+..+.
T Consensus 129 ~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 129 TTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 7777776632 322 222222 445555666666666776
Q ss_pred HHHHhcCCCChhHHHHHHHHHHh-cCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccC---CCChh
Q 047120 144 LLRKVAFGSDLFLQNCLISLYVR-CGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR---ERNLI 219 (634)
Q Consensus 144 ~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~p~~~ 219 (634)
.+.+.++. +......|..+|.. .++ +++..+++...+.+...+..++..+.+.|+.++|.+.++++... .|...
T Consensus 207 ~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~ 284 (987)
T PRK09782 207 EARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEK 284 (987)
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccH
Confidence 66666532 33334455555555 244 66666655433456777888889999999999999999888765 23322
Q ss_pred HHHHH------------------------------HHHHHhcCCcHHHHHHHHhhCCC----------------------
Q 047120 220 SWNSV------------------------------LNGYAQLKSGLQFAWQIFEKMPE---------------------- 247 (634)
Q Consensus 220 ~~~~l------------------------------l~~~~~~~~~~~~a~~~~~~~~~---------------------- 247 (634)
++.-+ +..+.+.+. .+.+.++...-+.
T Consensus 285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 363 (987)
T PRK09782 285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQ-YDAAQKLLATLPANEMLEERYAVSVATRNKAEALR 363 (987)
T ss_pred HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccH-HHHHHHHhcCCCcchHHHHHHhhccccCchhHHHH
Confidence 22111 233333333 4444444321111
Q ss_pred ----------CCchHHHHHHHHHHhcCChHHHHHHHhhCCC------CChhHHHHHHHHHHHcCC---hHHHHHH-----
Q 047120 248 ----------RDLISWNSMLHGCVKCGKMDDAQALFDKMPK------RDVVSWANMIDGYAKLGR---VDIARRL----- 303 (634)
Q Consensus 248 ----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~---~~~A~~~----- 303 (634)
.+......+.-...+.|+.++|..+|+.... .+.....-++..|.+.+. ..++..+
T Consensus 364 ~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 364 LARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 0122222223334577888899999888764 122344467777777665 2223222
Q ss_pred --------------------hhhCCC---C--ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHH
Q 047120 304 --------------------FDEMPK---R--DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358 (634)
Q Consensus 304 --------------------~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~ 358 (634)
+..... + +...|..+..++.. ++.++|+..+.+.... .|+......+...+
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al 519 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPDAWQHRAVAYQA 519 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCchHHHHHHHHHH
Confidence 111111 2 45677888877776 8899999988888744 57766555555666
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHH---HHHHHHHcCChHHHHH
Q 047120 359 AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA---MINGLAIHGLGELAFD 435 (634)
Q Consensus 359 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~A~~ 435 (634)
...|++++|...++.+... +|+...+..+..++.+.|++++|...++...+.++...+. +.......|++++|..
T Consensus 520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHH
Confidence 7899999999999987654 4444556677888999999999999999887544433333 3334445599999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCC
Q 047120 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PME 514 (634)
Q Consensus 436 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 514 (634)
.+++..+. .|+...+..+..++.+.|++++|+..++.+... -+.+...++.+..++...|++++|++.++++ ...
T Consensus 598 ~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 598 DLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999975 678889999999999999999999999999873 2334677889999999999999999999987 555
Q ss_pred CC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCc
Q 047120 515 PN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583 (634)
Q Consensus 515 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (634)
|+ ...+..+..++...|++++|+..+++++++.|.+..+....+++..+..+++.|.+-+++.-..++.
T Consensus 674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 55 6788999999999999999999999999999999999999999999999999999999888666553
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=2.4e-22 Score=192.10 Aligned_cols=441 Identities=15% Similarity=0.151 Sum_probs=305.7
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 047120 87 WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVR 166 (634)
Q Consensus 87 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 166 (634)
-..|..-.-+.|++.+|.+.-...-+.. +.+......+-..+.+..+.+...+.-....+.. .--..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3344555556777777776655443322 1122222222333444445554444333333322 1234466667777777
Q ss_pred cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHh
Q 047120 167 CGYLEFARQLFDKMGI---RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFE 243 (634)
Q Consensus 167 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~ 243 (634)
.|++++|+.+++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+..|+.....+-+..+.+
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlk------------- 195 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLK------------- 195 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHH-------------
Confidence 7777777777776643 245567777777777777777777777776666665544333333322
Q ss_pred hCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCC--CC-hhHHHHHHHHHHHcCChHHHHHHhhhCCCCC---hhhHHH
Q 047120 244 KMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK--RD-VVSWANMIDGYAKLGRVDIARRLFDEMPKRD---VVACNA 317 (634)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ 317 (634)
..|++++|...|.+..+ |. ...|+.|.-.+-..|+...|+..|++..+-| ...|-.
T Consensus 196 ------------------a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiN 257 (966)
T KOG4626|consen 196 ------------------AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYIN 257 (966)
T ss_pred ------------------hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhh
Confidence 34455555555544433 22 2456666666666677777777777666533 246777
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhcCCCCCCH-hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047120 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPDD-ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC 396 (634)
Q Consensus 318 l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 396 (634)
|...|...+.+++|+..|.+.. ...|+. ..+..+...|...|.++.|+..+++.++.. +.-+..|+.+..++-..
T Consensus 258 LGnV~ke~~~~d~Avs~Y~rAl---~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 258 LGNVYKEARIFDRAVSCYLRAL---NLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDK 333 (966)
T ss_pred HHHHHHHHhcchHHHHHHHHHH---hcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhc
Confidence 7777777777788877777776 345653 556666666777788888888887777653 22356778888888888
Q ss_pred CCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHH
Q 047120 397 GSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCF 472 (634)
Q Consensus 397 ~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 472 (634)
|++.+|.+.|.+.. .....+.+.|...|...|.+++|..+|....+ +.|. ....+.|...|-+.|++++|+..|
T Consensus 334 G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Y 411 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCY 411 (966)
T ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHH
Confidence 88888888888766 23556788888999999999999999998886 4676 458889999999999999999999
Q ss_pred HHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120 473 ELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549 (634)
Q Consensus 473 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (634)
+++.+ +.|+ ...|+.+...|...|+.+.|+..+.++ .+.|. ....+.|...|...|++.+|+..|+.++++.|+
T Consensus 412 kealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 412 KEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 99876 4676 667999999999999999999999887 67777 558899999999999999999999999999999
Q ss_pred CCchHHHHHHHHhcCCCchH
Q 047120 550 NSSSYVLLSNMFAGLGMWND 569 (634)
Q Consensus 550 ~~~~~~~l~~~~~~~g~~~~ 569 (634)
.|++|..++..+---.+|.+
T Consensus 489 fpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 489 FPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred CchhhhHHHHHHHHHhcccc
Confidence 99999999988765555544
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.5e-21 Score=186.77 Aligned_cols=356 Identities=13% Similarity=0.132 Sum_probs=293.7
Q ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHhhCCC---CCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChh---HHHHHHHHH
Q 047120 218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPE---RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVV---SWANMIDGY 291 (634)
Q Consensus 218 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~ 291 (634)
..+|..+.+.+...|+ ++.|...++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+-|+. ..+.+...+
T Consensus 116 ae~ysn~aN~~kerg~-~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQ-LQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHHhch-HHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 3445555555555555 5555555555554 23456666777777888888888888877764332 234455666
Q ss_pred HHcCChHHHHHHhhhCCC--CC-hhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCH-hHHHHHHHHHHccCChHHH
Q 047120 292 AKLGRVDIARRLFDEMPK--RD-VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD-ASLVIVLSAIAQLGHIDKG 367 (634)
Q Consensus 292 ~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a 367 (634)
...|++.+|...+.+..+ |. .+.|..|...+...|+..+|+..|++.. .+.|+- ..|..+...+...+.++.|
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv---kldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV---KLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhh---cCCCcchHHHhhHHHHHHHHhcchHH
Confidence 778999999988877664 32 4689999999999999999999999998 567874 5899999999999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 047120 368 VAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED--G-SVDHWNAMINGLAIHGLGELAFDLLMEMERLS 444 (634)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 444 (634)
...+..+.... +.....+..+.-.|-..|.++-|+..|++..+ | =+..|+.|..++-..|+..+|...+.+....
T Consensus 272 vs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l- 349 (966)
T KOG4626|consen 272 VSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL- 349 (966)
T ss_pred HHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-
Confidence 99998887653 33457777888889999999999999999874 3 3458999999999999999999999999874
Q ss_pred CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHH
Q 047120 445 IEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIW 520 (634)
Q Consensus 445 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~ 520 (634)
.|+ ....+.|...+...|.+++|.++|..... +.|. ...++.|...|-++|++++|+..++++ .++|+ ...|
T Consensus 350 -~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~ 425 (966)
T KOG4626|consen 350 -CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADAL 425 (966)
T ss_pred -CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHH
Confidence 676 56899999999999999999999999876 3555 556899999999999999999999998 88898 5699
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCc
Q 047120 521 RTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583 (634)
Q Consensus 521 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (634)
+.+...|...|+...|...+.+++..+|.-.+++..|+.+|...|++.+|++-++...+....
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999999999999999999999999776543
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=6.1e-19 Score=187.44 Aligned_cols=417 Identities=12% Similarity=-0.008 Sum_probs=259.1
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCC
Q 047120 123 SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI--R-DSVSYNSMIDGYVKSG 199 (634)
Q Consensus 123 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g 199 (634)
......+.+.|+++.|...|++.++. .|++..|..+..+|.+.|++++|++.++...+ | +...|..+..++...|
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 34445556667777777777766653 34555666666666677777777766666543 2 3446666666677777
Q ss_pred ChHHHHHHHhhCccCCCC-hhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 047120 200 NIESARELFDSMPIRERN-LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK 278 (634)
Q Consensus 200 ~~~~A~~~~~~m~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 278 (634)
++++|+.-|.......+. ......++........ ...+...++.-.
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a-~~~~~~~l~~~~-------------------------------- 255 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFA-ESKAKEILETKP-------------------------------- 255 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHH-HHHHHHHHhcCC--------------------------------
Confidence 777766665544332111 1111111111111000 112222221111
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHhhhCCCCC---hhhHHHHHHHH---HHcCCchHHHHHHHHHHhcCCCCCC-HhHH
Q 047120 279 RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD---VVACNAMMGGY---VRNGYSMKALEIFDNMQCELYLHPD-DASL 351 (634)
Q Consensus 279 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~ 351 (634)
++...+..+.. |...........-++...+.+ ...+..+...+ ...+++++|++.|+.....+...|+ ...+
T Consensus 256 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~ 334 (615)
T TIGR00990 256 ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIAL 334 (615)
T ss_pred CCCCCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 11111111111 111111111111111111111 11111111111 2346778888888888765333443 3456
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcC
Q 047120 352 VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHG 428 (634)
Q Consensus 352 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~ 428 (634)
..+...+...|++++|+..++..++.. +.....+..+..++...|++++|...|+++. ..+...|..+...+...|
T Consensus 335 ~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 413 (615)
T TIGR00990 335 NLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG 413 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 666777778888888888888887753 3345677778888888888888888888765 335678888888899999
Q ss_pred ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHH
Q 047120 429 LGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNL 507 (634)
Q Consensus 429 ~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 507 (634)
++++|+..|++..+. .|+ ...+..+..++.+.|++++|+..++.+.+. .+.+...++.+...+...|++++|++.
T Consensus 414 ~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~ 489 (615)
T TIGR00990 414 EFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEK 489 (615)
T ss_pred CHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999998875 555 557777888888999999999999988763 233467788889999999999999999
Q ss_pred HHhC-CCCCCH-H-------HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120 508 IEDM-PMEPND-V-------IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578 (634)
Q Consensus 508 ~~~~-~~~p~~-~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 578 (634)
|++. .+.|+. . .++..+..+...|++++|+.+++++++++|.+...+..++.++.+.|++++|++++++..
T Consensus 490 ~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 490 FDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9886 444431 1 112222223446899999999999999999888889999999999999999999999886
Q ss_pred hC
Q 047120 579 ER 580 (634)
Q Consensus 579 ~~ 580 (634)
+.
T Consensus 570 ~l 571 (615)
T TIGR00990 570 EL 571 (615)
T ss_pred HH
Confidence 65
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=3.2e-19 Score=180.21 Aligned_cols=290 Identities=16% Similarity=0.140 Sum_probs=198.5
Q ss_pred HHHcCChHHHHHHhhhCCC---CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCC--HhHHHHHHHHHHccCChH
Q 047120 291 YAKLGRVDIARRLFDEMPK---RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD--DASLVIVLSAIAQLGHID 365 (634)
Q Consensus 291 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~ 365 (634)
+...|++++|...|+++.+ .+..++..+...+...|++++|+.+++.+.......+. ...+..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 3444555555555555543 12334555555666666666666666665543111110 134455555566666666
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCC--------hhHHHHHHHHHHHcCChHHHHHHH
Q 047120 366 KGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS--------VDHWNAMINGLAIHGLGELAFDLL 437 (634)
Q Consensus 366 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~~~~~~A~~~~ 437 (634)
.|..+++.+.+.. +.+..++..++.++.+.|++++|.+.++.+.+.+ ...+..++..+...|++++|...|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666666665542 3345556666666666666666666666654211 113456677788889999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC--hhHHHHHHHHHhccCCHHHHHHHHHhC-CC
Q 047120 438 MEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE--LQHYGCMVDILGRAGHIEAARNLIEDM-PM 513 (634)
Q Consensus 438 ~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 513 (634)
+++.+. .|+ ...+..+...+.+.|++++|.++++++... .|+ ...+..++.+|.+.|++++|...++++ ..
T Consensus 204 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 204 KKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 988875 344 457778888899999999999999998763 233 456788889999999999999999987 55
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhc---CCCchHHHHHHHHHHhCCCccCCc
Q 047120 514 EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG---LGMWNDARRVRSMMKERNLKKLPG 587 (634)
Q Consensus 514 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 587 (634)
.|+...+..++..+.+.|++++|..+++++++..|+++. +..+...+.. .|+.++++.++++|.+.++++.|.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 677777788888899999999999999999999887764 4444444332 568999999999999998888885
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.6e-17 Score=167.84 Aligned_cols=523 Identities=12% Similarity=0.048 Sum_probs=332.0
Q ss_pred hHHHHHh--hcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcch-HHHHH
Q 047120 50 TKLVASF--SSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFS-ASLVL 126 (634)
Q Consensus 50 ~~li~~~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll 126 (634)
..|-+++ ...+++ ..|...|.......+..-+...-.+-..+.+.|+.+.|+..|.+..+ +.|+... +..|-
T Consensus 166 ~LlGkA~i~ynkkdY---~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralq--Ldp~~v~alv~L~ 240 (1018)
T KOG2002|consen 166 ALLGKARIAYNKKDY---RGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQ--LDPTCVSALVALG 240 (1018)
T ss_pred HHHHHHHHHhccccH---HHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHh--cChhhHHHHHHHH
Confidence 3344443 355677 88888888754332222222222333455577888888888888887 3353322 22221
Q ss_pred HHHhc---cCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHh
Q 047120 127 KACSR---LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR------DSVSYNSMIDGYVK 197 (634)
Q Consensus 127 ~~~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~ 197 (634)
..-.. ...+..+...+...-... .-|+.+.+.|.+.|.-.|++..++.+.+.+... -..+|-.+.++|-.
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha 319 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA 319 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 11112 223445555555554433 346777888888888888888888887766432 12356677888888
Q ss_pred CCChHHHHHHHhhCccCCCChhHH--HHHHHHHHhcCCcHHHHHHHHhhCCC--C-CchHHHHHHHHHHhcC----ChHH
Q 047120 198 SGNIESARELFDSMPIRERNLISW--NSVLNGYAQLKSGLQFAWQIFEKMPE--R-DLISWNSMLHGCVKCG----KMDD 268 (634)
Q Consensus 198 ~g~~~~A~~~~~~m~~~~p~~~~~--~~ll~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g----~~~~ 268 (634)
.|++++|...|.+.....|+.+++ .-+...+.+.++ ++.+...|+++.. | +..+...+...|...+ ..+.
T Consensus 320 ~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~d-le~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 320 QGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGD-LEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred hccHHHHHHHHHHHHccCCCCccccccchhHHHHHhch-HHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 888888888888887776665443 345677777788 8888888888776 3 3345555566666554 5567
Q ss_pred HHHHHhhCCC---CChhHHHHHHHHHHHcCChH------HHHHHhhhCC-CCChhhHHHHHHHHHHcCCchHHHHHHHHH
Q 047120 269 AQALFDKMPK---RDVVSWANMIDGYAKLGRVD------IARRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNM 338 (634)
Q Consensus 269 A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 338 (634)
|..++.+..+ .|...|-.+..+|....-+. .|..++.... ...+...|.+...+...|++.+|...|...
T Consensus 399 a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 7777777765 34566666666665544332 3333333222 346667888888888888888888888877
Q ss_pred HhcC--CCCCCHh------HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc
Q 047120 339 QCEL--YLHPDDA------SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE 410 (634)
Q Consensus 339 ~~~~--~~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (634)
.... ...+|.. +--.+....-..++.+.|.++|..+.+.. +.-+..|..+.-+....+...+|...++.+.
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l 557 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDAL 557 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHH
Confidence 6330 0122321 22233444556678888888888887642 1122233333333333466777777777765
Q ss_pred ---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc------------cCCHHHHHHHHHH
Q 047120 411 ---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS-IEPDDITFTGLLNACAH------------AGLVKEGLLCFEL 474 (634)
Q Consensus 411 ---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~ 474 (634)
+.++..+..+...+.....+..|.+-|+...+.- ..+|..+...|.+.|.+ .+..++|+++|.+
T Consensus 558 ~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~k 637 (1018)
T KOG2002|consen 558 NIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGK 637 (1018)
T ss_pred hcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 4566677777777887777877877666655432 22466666666665542 3456777777777
Q ss_pred hHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC--CCC
Q 047120 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD--SSN 550 (634)
Q Consensus 475 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~ 550 (634)
+.+ .-+.+...-|.+.-.++..|++.+|..+|.++ ....+..+|..+...|...|++..|++.|+...+.. .++
T Consensus 638 vL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~ 715 (1018)
T KOG2002|consen 638 VLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNR 715 (1018)
T ss_pred HHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 765 22445666677777888888888888888877 223355677788888888888888888888887665 356
Q ss_pred CchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 551 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
+.....|+.++.+.|++.+|.+.+.......+
T Consensus 716 ~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 716 SEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 67788888888888888888888777755543
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=1.4e-17 Score=177.11 Aligned_cols=421 Identities=14% Similarity=0.027 Sum_probs=279.7
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 047120 87 WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVR 166 (634)
Q Consensus 87 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 166 (634)
+......+.+.|++++|+..|++.++ +.|+...|..+..++.+.|++++|...+..+++... .+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 45667788899999999999999987 568888899999999999999999999999998652 356688889999999
Q ss_pred cCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHh
Q 047120 167 CGYLEFARQLFDKMGIR---DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFE 243 (634)
Q Consensus 167 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~ 243 (634)
.|++++|+..|...... +......++..+........+...+..-. ++...+..+.. +..... ......-+.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~---~~~~~~~~~~~-~~~~~~-~~~~~~~~~ 281 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP---ENLPSVTFVGN-YLQSFR-PKPRPAGLE 281 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCCHHHHHH-HHHHcc-CCcchhhhh
Confidence 99999999887654321 11122222222222111233333333222 22222222222 211111 111111111
Q ss_pred hCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHH---HHHcCChHHHHHHhhhCCC------CChhh
Q 047120 244 KMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDG---YAKLGRVDIARRLFDEMPK------RDVVA 314 (634)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~------~~~~~ 314 (634)
...+.+... ...+..+... ....+++++|.+.|+...+ .....
T Consensus 282 ~~~~~~~~~----------------------------~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a 333 (615)
T TIGR00990 282 DSNELDEET----------------------------GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIA 333 (615)
T ss_pred ccccccccc----------------------------ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHH
Confidence 111100000 0000000000 0123456666666665543 13345
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHh
Q 047120 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD-DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMY 393 (634)
Q Consensus 315 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 393 (634)
|+.+...+...|++++|+..|++... +.|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+..++
T Consensus 334 ~~~lg~~~~~~g~~~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLH 409 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 67777777888888888888888873 3565 4467777777778888888888888877653 44567788888888
Q ss_pred HhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHH
Q 047120 394 SKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGL 469 (634)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~ 469 (634)
...|++++|+..|++... .+...+..+...+.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|+
T Consensus 410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHH
Confidence 888889988888888763 34557777888888999999999999988864 454 568888888999999999999
Q ss_pred HHHHHhHHhcCcccCh-h-------HHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 047120 470 LCFELMRRIHKLEPEL-Q-------HYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPV 539 (634)
Q Consensus 470 ~~~~~~~~~~~~~~~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 539 (634)
..|+.+... .|+. . .++.....+...|++++|.+++++. ...|+ ...+..+...+...|++++|...
T Consensus 488 ~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 488 EKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKL 564 (615)
T ss_pred HHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 999988763 2221 1 1222223344579999999999886 55565 45788889999999999999999
Q ss_pred HHHHhccCCCCCc
Q 047120 540 AKHLIGMDSSNSS 552 (634)
Q Consensus 540 ~~~~~~~~p~~~~ 552 (634)
+++++++.+....
T Consensus 565 ~e~A~~l~~~~~e 577 (615)
T TIGR00990 565 FERAAELARTEGE 577 (615)
T ss_pred HHHHHHHhccHHH
Confidence 9999988765443
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.4e-16 Score=161.23 Aligned_cols=541 Identities=14% Similarity=0.037 Sum_probs=387.5
Q ss_pred hHHHHHHHHHH--HhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCC---cch
Q 047120 28 NDVNQIHARMI--TTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLD---PKE 102 (634)
Q Consensus 28 ~~~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~ 102 (634)
..+..++.... .....||+.+-. -..+.++|.. +.|...|.+..+.+| .++.++-.|.-.-....+ +..
T Consensus 181 ~~al~yyk~al~inp~~~aD~rIgi--g~Cf~kl~~~---~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 181 RGALKYYKKALRINPACKADVRIGI--GHCFWKLGMS---EKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred HHHHHHHHHHHhcCcccCCCccchh--hhHHHhccch---hhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHH
Confidence 34455555533 234556654332 2456789998 999999998876544 244444433333333333 446
Q ss_pred HHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 047120 103 ALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGS--DLFLQNCLISLYVRCGYLEFARQLFDKM 180 (634)
Q Consensus 103 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 180 (634)
++.++...-..+ .-|+...+.|.+.+.-.|++..+..+...+......- -...|--+.++|...|++++|...|-+.
T Consensus 255 ~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 255 GVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred HHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 666666655422 3466678888888999999999999999998765221 1234566789999999999999999876
Q ss_pred CC--CC--hhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHH-HhcC---CcHHHHHHHHhhCCC---CC
Q 047120 181 GI--RD--SVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGY-AQLK---SGLQFAWQIFEKMPE---RD 249 (634)
Q Consensus 181 ~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~-~~~~---~~~~~a~~~~~~~~~---~~ 249 (634)
.. +| +..+-.+...+.+.|+++.+...|+.+....|+...-..++.++ +..+ ...+.|..++.+..+ .|
T Consensus 334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d 413 (1018)
T KOG2002|consen 334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVD 413 (1018)
T ss_pred HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccccc
Confidence 54 33 34566788999999999999999999988877766555555444 3332 126888888888777 35
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHhhCC--------CCChhHHHHHHHHHHHcCChHHHHHHhhhCCC-------CCh--
Q 047120 250 LISWNSMLHGCVKCGKMDDAQALFDKMP--------KRDVVSWANMIDGYAKLGRVDIARRLFDEMPK-------RDV-- 312 (634)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~-- 312 (634)
...|-.+...+....-+ .++..|..+. ...+...|.+...+...|++++|...|+.... ++.
T Consensus 414 ~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~ 492 (1018)
T KOG2002|consen 414 SEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK 492 (1018)
T ss_pred HHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc
Confidence 56666666665544333 2244444332 36788999999999999999999999987653 222
Q ss_pred ----hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHH
Q 047120 313 ----VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS-LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV 387 (634)
Q Consensus 313 ----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 387 (634)
.+-..+...+-..++++.|.+.|+.+... .|..+. |..++......+...+|...++.+.+.. ..++..++
T Consensus 493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke---hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ars 568 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKE---HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARS 568 (1018)
T ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHH
Confidence 23334566677788999999999999955 677654 4444434445678889999998887753 45667777
Q ss_pred HHHHHhHhcCCHHHHHHHHHhcc-----CCChhHHHHHHHHHHH------------cCChHHHHHHHHHHHHCCCCCCHH
Q 047120 388 ALIDMYSKCGSIENAIKVFEQIE-----DGSVDHWNAMINGLAI------------HGLGELAFDLLMEMERLSIEPDDI 450 (634)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~------------~~~~~~A~~~~~~m~~~g~~p~~~ 450 (634)
.+...+.+..++..|.+-|+.+. .+|..+.-+|...|.+ .+..++|+++|.+.++.. +-|..
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~y 647 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMY 647 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhh
Confidence 78889999999988888666654 2344444455554432 234688999999988752 23556
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 047120 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM----PMEPNDVIWRTLLSA 526 (634)
Q Consensus 451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~ 526 (634)
.-+.+.-.++..|++.+|..+|..+++. ......+|-.+.++|..+|++-.|+++|+.. .-..+......|..+
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 7777888899999999999999999883 2334567889999999999999999999886 224567788999999
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcC-------------------CCchHHHHHHHHHHhCCCc
Q 047120 527 CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL-------------------GMWNDARRVRSMMKERNLK 583 (634)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~~~~~ 583 (634)
+...|.+.+|.+.+..++...|.++..-..++.+..+. +..+.|.++|..|...+-+
T Consensus 726 ~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 726 WYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999888877765433 3566788888888776654
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=3.2e-18 Score=172.89 Aligned_cols=286 Identities=19% Similarity=0.133 Sum_probs=226.4
Q ss_pred HHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHhhhCCCC-C------hhhHHHHHHHHHHcC
Q 047120 257 LHGCVKCGKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVDIARRLFDEMPKR-D------VVACNAMMGGYVRNG 326 (634)
Q Consensus 257 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~l~~~~~~~g 326 (634)
...+...|++++|...|+++.+ .+..++..+...+...|++++|..+++.+... + ...+..++..|.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3345567888888888888765 23456777888888888888888888877642 1 245777888889999
Q ss_pred CchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc----hhHHHHHHHHhHhcCCHHHH
Q 047120 327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN----GKHGVALIDMYSKCGSIENA 402 (634)
Q Consensus 327 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A 402 (634)
++++|+.+|+++.+. -.++..++..++..+...|++++|...++.+.+.+..+. ...+..+...+.+.|++++|
T Consensus 122 ~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 122 LLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 999999999998853 234567888888888999999999999998887653322 22455677788899999999
Q ss_pred HHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 047120 403 IKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH 479 (634)
Q Consensus 403 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 479 (634)
...|+++.+ .+...+..++..+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++.+.+.
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 999998763 3455788889999999999999999999987532222457888999999999999999999999873
Q ss_pred CcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHhccC
Q 047120 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRTLLSACRN---YENLNVGEPVAKHLIGMD 547 (634)
Q Consensus 480 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~ 547 (634)
.|+...+..++..+.+.|++++|.++++++ ...|+...+..++..+.. .|+.+++..+++++++..
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 567677788999999999999999999987 667999999988887664 568889999888888644
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=6.1e-17 Score=175.27 Aligned_cols=406 Identities=10% Similarity=-0.022 Sum_probs=199.6
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHH
Q 047120 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI---RDSVSYNSMID 193 (634)
Q Consensus 117 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 193 (634)
.++.-..-.+......|+.++|++++....... +.+...+..+...+...|++++|.+++++... .+...+..++.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~ 91 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLIL 91 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 344444555566666777777777776665522 23344566666667777777777777766422 23445566666
Q ss_pred HHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC--C-CchHHHHHHHHHHhcCChHHHH
Q 047120 194 GYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE--R-DLISWNSMLHGCVKCGKMDDAQ 270 (634)
Q Consensus 194 ~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~ 270 (634)
.+...|++++|+..+++.....|+...+..+...+...++ .+.|...++++.+ | +...+..+...+...+..+.|+
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~-~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPDKANLLALAYVYKRAGR-HWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 6667777777777776666554443334444444444444 5555555555444 2 2222233333444444444444
Q ss_pred HHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHH-----HcCCc---hHHHHHHHHHHhcC
Q 047120 271 ALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV-----RNGYS---MKALEIFDNMQCEL 342 (634)
Q Consensus 271 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~---~~A~~~~~~m~~~~ 342 (634)
+.++.+.+ ++.....+ . ......++.... ..+++ ++|++.++.+....
T Consensus 171 ~~l~~~~~-~p~~~~~l--------~---------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~ 226 (765)
T PRK10049 171 GAIDDANL-TPAEKRDL--------E---------------ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW 226 (765)
T ss_pred HHHHhCCC-CHHHHHHH--------H---------------HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc
Confidence 44443332 11100000 0 000111111111 11222 55666666666432
Q ss_pred CCCCCHh-HHH----HHHHHHHccCChHHHHHHHHHHHHcCCC-CchhHHHHHHHHhHhcCCHHHHHHHHHhccCCC---
Q 047120 343 YLHPDDA-SLV----IVLSAIAQLGHIDKGVAIHRYLEKDQFS-LNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS--- 413 (634)
Q Consensus 343 ~~~p~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--- 413 (634)
...|+.. .+. ..+.++...|++++|+..|+.+.+.+.+ |+ .....+..+|...|++++|+..|+++.+.+
T Consensus 227 ~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~ 305 (765)
T PRK10049 227 HDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETI 305 (765)
T ss_pred ccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCC
Confidence 2233221 111 1122334556667777777766665421 11 111223556666666666666666654221
Q ss_pred ----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHhccCCHHHHHHHHHHh
Q 047120 414 ----VDHWNAMINGLAIHGLGELAFDLLMEMERLSI-----------EPDD---ITFTGLLNACAHAGLVKEGLLCFELM 475 (634)
Q Consensus 414 ----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-----------~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~ 475 (634)
...+..+..++...|++++|..+++++..... .|+. ..+..+...+...|++++|+++++++
T Consensus 306 ~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~a 385 (765)
T PRK10049 306 ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAREL 385 (765)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12344445556666666666666666665310 1121 12334444555555666666555555
Q ss_pred HHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 047120 476 RRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551 (634)
Q Consensus 476 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (634)
... .+.+...+..++..+...|++++|++.++++ ...|+ ...+..++..+...|++++|+.+++++++..|+++
T Consensus 386 l~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 386 AYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 442 1223444555555555555555555555554 33344 33444444445555555555555555555555555
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=1.7e-17 Score=175.68 Aligned_cols=349 Identities=11% Similarity=0.006 Sum_probs=181.5
Q ss_pred HhcCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChh-HHHHHHHHHHhcCCcHHH
Q 047120 165 VRCGYLEFARQLFDKMGIR------DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLI-SWNSVLNGYAQLKSGLQF 237 (634)
Q Consensus 165 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~-~~~~ll~~~~~~~~~~~~ 237 (634)
.+..+++...-+|..-++. +......++..+.+.|++++|+.+++......|+.. ....++.+....|+ .+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~-~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQ-PDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCC-HHH
Confidence 4567787777777666542 333455667778888999999988888877755543 23333334444455 666
Q ss_pred HHHHHhhCCC--C-CchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhh
Q 047120 238 AWQIFEKMPE--R-DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVA 314 (634)
Q Consensus 238 a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 314 (634)
|...++++.. | +...+..+...+.+.|++++|...++++.+.+ ..+...
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~----------------------------P~~~~a 146 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF----------------------------SGNSQI 146 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------CCcHHH
Confidence 6666666554 2 23344444455555555555555555443200 012334
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhH
Q 047120 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYS 394 (634)
Q Consensus 315 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 394 (634)
+..+...+...|++++|+..++.+... .|+.......+..+...|++++|...++.+.+....++......+...+.
T Consensus 147 ~~~la~~l~~~g~~~eA~~~~~~~~~~---~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~ 223 (656)
T PRK15174 147 FALHLRTLVLMDKELQAISLARTQAQE---VPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLC 223 (656)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 444444455555555555555444322 22221111111223444555555555554444322222222333344455
Q ss_pred hcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHH
Q 047120 395 KCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGEL----AFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVK 466 (634)
Q Consensus 395 ~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~----A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~ 466 (634)
..|++++|+..++++. ..+...+..+...+...|++++ |...|++..+. .|+ ...+..+...+...|+++
T Consensus 224 ~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~ 301 (656)
T PRK15174 224 AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNE 301 (656)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHH
Confidence 5555555555555443 1234445555555566666553 56666665553 343 335556666666666666
Q ss_pred HHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHH
Q 047120 467 EGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVI-WRTLLSACRNYENLNVGEPVAKHL 543 (634)
Q Consensus 467 ~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~ 543 (634)
+|...++.+... .|+ ...+..+..+|.+.|++++|++.++++ ...|+... +..+..++...|+.++|...|+++
T Consensus 302 eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 302 KAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666666665542 222 334555566666666666666666655 33444332 222344556666666666666666
Q ss_pred hccCCCC
Q 047120 544 IGMDSSN 550 (634)
Q Consensus 544 ~~~~p~~ 550 (634)
++..|.+
T Consensus 379 l~~~P~~ 385 (656)
T PRK15174 379 IQARASH 385 (656)
T ss_pred HHhChhh
Confidence 6666553
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=3.2e-16 Score=166.11 Aligned_cols=444 Identities=11% Similarity=0.016 Sum_probs=290.6
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 047120 87 WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKF-SASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYV 165 (634)
Q Consensus 87 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 165 (634)
|...|.. .+.|+++.|++.|++..+. .|+.. ....++..+...|+.++|+..+++.... -..+......+...|.
T Consensus 38 y~~aii~-~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~ 113 (822)
T PRK14574 38 YDSLIIR-ARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHH-HhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHH
Confidence 4444443 3678888888888888773 45542 2227777777778888888888877621 1112222333355677
Q ss_pred hcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHH
Q 047120 166 RCGYLEFARQLFDKMGI--R-DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIF 242 (634)
Q Consensus 166 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~ 242 (634)
..|++++|+++|+++.+ | +...+..++..+...++.++|++.++++....|+...+..++..+...++ ...|...+
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~-~~~AL~~~ 192 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDR-NYDALQAS 192 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcch-HHHHHHHH
Confidence 77888888888887754 2 44566677777778888888888888887777776555333333333333 43466666
Q ss_pred hhCCC--C-CchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHH
Q 047120 243 EKMPE--R-DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM 319 (634)
Q Consensus 243 ~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 319 (634)
+++.+ | +...+..++.++.+.|-...|.++..+-.. ..+-...... ..+.|.+..+....++.
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~l-----~~~~~a~~vr~a~~~~~------- 258 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHYRQL-----ERDAAAEQVRMAVLPTR------- 258 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHHHHH-----HHHHHHHHHhhcccccc-------
Confidence 66655 3 334445555666666666666665554321 1111110000 01111111111110000
Q ss_pred HHHHHcC---CchHHHHHHHHHHhcCCCCCCHh-----HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047120 320 GGYVRNG---YSMKALEIFDNMQCELYLHPDDA-----SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALID 391 (634)
Q Consensus 320 ~~~~~~g---~~~~A~~~~~~m~~~~~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 391 (634)
...+ -.+.|+.-++.+....+-.|... ...-.+.++...++..+++..++.+...+.+....+...+.+
T Consensus 259 ---~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad 335 (822)
T PRK14574 259 ---SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS 335 (822)
T ss_pred ---cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 0011 12455555666554323334321 222345567788889999999999988887766778888999
Q ss_pred HhHhcCCHHHHHHHHHhccCC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCCH--
Q 047120 392 MYSKCGSIENAIKVFEQIEDG---------SVDHWNAMINGLAIHGLGELAFDLLMEMERLSI-----------EPDD-- 449 (634)
Q Consensus 392 ~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-----------~p~~-- 449 (634)
+|...+++++|+.+|+.+... +......|..+|...+++++|..+++++.+... .|++
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 999999999999999887532 222356788899999999999999999987311 1332
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 047120 450 -ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSA 526 (634)
Q Consensus 450 -~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~ 526 (634)
..+..++..+.-.|++.+|++.++.+.. .-+-|......+.+.+...|.+.+|+..++.+ ...|+ ..+....+.+
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 2445567778899999999999999976 33557888899999999999999999999877 45666 4566778888
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCCchH
Q 047120 527 CRNYENLNVGEPVAKHLIGMDSSNSSSY 554 (634)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 554 (634)
+...|++++|..+.+++++..|+++..-
T Consensus 494 al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 8899999999999999999999988543
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=6.9e-17 Score=174.83 Aligned_cols=397 Identities=11% Similarity=0.017 Sum_probs=258.3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCCh-hHHHHHHHH
Q 047120 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGI---RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNL-ISWNSVLNG 227 (634)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~-~~~~~ll~~ 227 (634)
.++....-.+......|+.++|++++++... .+...+..+...+...|++++|+++|++.....|+. ..+..+...
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3444555566677778888888888887653 234457888888888888888888888877664543 334444445
Q ss_pred HHhcCCcHHHHHHHHhhCCC--C-CchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHh
Q 047120 228 YAQLKSGLQFAWQIFEKMPE--R-DLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLF 304 (634)
Q Consensus 228 ~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 304 (634)
+...++ .++|...++++.. | +.. +..+..++...|+.++|+..++++.+.+
T Consensus 93 l~~~g~-~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~------------------------ 146 (765)
T PRK10049 93 LADAGQ-YDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA------------------------ 146 (765)
T ss_pred HHHCCC-HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------
Confidence 555555 6666665555543 2 222 4444444445555555555554443200
Q ss_pred hhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHh------HHHHHHHHH-----HccCCh---HHHHHH
Q 047120 305 DEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA------SLVIVLSAI-----AQLGHI---DKGVAI 370 (634)
Q Consensus 305 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~------~~~~ll~~~-----~~~~~~---~~a~~~ 370 (634)
..+...+..+...+...|..++|+..++.... .|+.. ....++... ...+++ +.|+..
T Consensus 147 ----P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 147 ----PQTQQYPTEYVQALRNNRLSAPALGAIDDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQ 218 (765)
T ss_pred ----CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHH
Confidence 01222333344444444555555554443331 22210 011111111 112233 677888
Q ss_pred HHHHHHc-CCCCchh-HH-HH---HHHHhHhcCCHHHHHHHHHhccCCC---hh-HHHHHHHHHHHcCChHHHHHHHHHH
Q 047120 371 HRYLEKD-QFSLNGK-HG-VA---LIDMYSKCGSIENAIKVFEQIEDGS---VD-HWNAMINGLAIHGLGELAFDLLMEM 440 (634)
Q Consensus 371 ~~~~~~~-~~~~~~~-~~-~~---l~~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~~~~~~A~~~~~~m 440 (634)
++.+.+. ...|+.. .+ .. .+..+...|++++|+..|+++.+.+ +. .-..+...|...|++++|+..|+++
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 8887754 2223221 11 11 1334567799999999999988532 21 2233577899999999999999998
Q ss_pred HHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----------cccC---hhHHHHHHHHHhccCCHHHH
Q 047120 441 ERLSIEP---DDITFTGLLNACAHAGLVKEGLLCFELMRRIHK----------LEPE---LQHYGCMVDILGRAGHIEAA 504 (634)
Q Consensus 441 ~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A 504 (634)
.+..... .......+..++...|++++|..+++.+..... -.|+ ...+..++..+...|++++|
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 8643111 124566677788999999999999999886321 0122 23456678889999999999
Q ss_pred HHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 505 RNLIEDM-P-MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 505 ~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
+++++++ . .+.+...+..++..+...|++++|+..++++++.+|+++..+..++..+.+.|++++|..+++++.+...
T Consensus 379 ~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 379 EMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 9999998 3 3344678889999999999999999999999999999999999999999999999999999999977543
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=1.1e-16 Score=169.42 Aligned_cols=341 Identities=12% Similarity=-0.037 Sum_probs=192.0
Q ss_pred HhccCChHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCChHH
Q 047120 129 CSRLGLIEEGLQIHGLLRKVAF--GSDLFLQNCLISLYVRCGYLEFARQLFDKMGI---RDSVSYNSMIDGYVKSGNIES 203 (634)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 203 (634)
+.++.+++..--.+....+..- .-+..-...++..+.+.|++++|..+++.... .+...+..++.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 4456677766555555443211 11222334556777889999999999988753 245566777788888999999
Q ss_pred HHHHHhhCccCCCCh-hHHHHHHHHHHhcCCcHHHHHHHHhhCCC--C-CchHHHHHHHHHHhcCChHHHHHHHhhCCC-
Q 047120 204 ARELFDSMPIRERNL-ISWNSVLNGYAQLKSGLQFAWQIFEKMPE--R-DLISWNSMLHGCVKCGKMDDAQALFDKMPK- 278 (634)
Q Consensus 204 A~~~~~~m~~~~p~~-~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 278 (634)
|++.++++....|+. ..+..+...+...|+ .+.|...+++... | +...+..+...+...|++++|...++.+..
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~-~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQ-YATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 999999999886665 456666777788888 9999999999876 3 345666677777777777777777765532
Q ss_pred -CCh-hHHHHHHHHHHHcCChHHHHHHhhhCCCC----ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCC-CHhHH
Q 047120 279 -RDV-VSWANMIDGYAKLGRVDIARRLFDEMPKR----DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP-DDASL 351 (634)
Q Consensus 279 -~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~ 351 (634)
|+. ..+..+ ..+...|++++|...++.+.+. +...+..+...+...|++++|+..++++... .| +...+
T Consensus 174 ~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~---~p~~~~~~ 249 (656)
T PRK15174 174 VPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR---GLDGAALR 249 (656)
T ss_pred CCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCHHHH
Confidence 222 222222 2345556666666655554331 1122233344555555555555555555532 22 22334
Q ss_pred HHHHHHHHccCChHH----HHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHc
Q 047120 352 VIVLSAIAQLGHIDK----GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIH 427 (634)
Q Consensus 352 ~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 427 (634)
..+...+...|++++ |...++.+.+.. +.+.. .+..+...+...
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~-------------------------------a~~~lg~~l~~~ 297 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVR-------------------------------IVTLYADALIRT 297 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHH-------------------------------HHHHHHHHHHHC
Confidence 444444444454443 444444444332 22333 444455555555
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccCh-hHHHHHHHHHhccCCHHHHH
Q 047120 428 GLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL-QHYGCMVDILGRAGHIEAAR 505 (634)
Q Consensus 428 ~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 505 (634)
|++++|+..+++..+. .|+ ...+..+..++.+.|++++|...++.+... .|+. ..+..+..++...|++++|.
T Consensus 298 g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA~ 372 (656)
T PRK15174 298 GQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEAE 372 (656)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHHH
Confidence 5555555555555443 333 234444445555555555555555555432 2222 12222344455555555555
Q ss_pred HHHHhC
Q 047120 506 NLIEDM 511 (634)
Q Consensus 506 ~~~~~~ 511 (634)
+.|+++
T Consensus 373 ~~l~~a 378 (656)
T PRK15174 373 SVFEHY 378 (656)
T ss_pred HHHHHH
Confidence 555544
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=1.4e-14 Score=153.66 Aligned_cols=429 Identities=12% Similarity=0.020 Sum_probs=287.7
Q ss_pred HHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-hhHHHHH--HHHHHhCCChHH
Q 047120 127 KACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRD-SVSYNSM--IDGYVKSGNIES 203 (634)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l--i~~~~~~g~~~~ 203 (634)
-...+.|+++.|+..++++.+....-.+.++ .++..+...|+.++|+..+++...|+ ...+..+ ...+...|++++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3456789999999999999886533222344 78888888899999999999887653 3344444 557888899999
Q ss_pred HHHHHhhCccCCCCh-hHHHHHHHHHHhcCCcHHHHHHHHhhCCC--CCchHHHHHHHHHHhcCChHHHHHHHhhCCC--
Q 047120 204 ARELFDSMPIRERNL-ISWNSVLNGYAQLKSGLQFAWQIFEKMPE--RDLISWNSMLHGCVKCGKMDDAQALFDKMPK-- 278 (634)
Q Consensus 204 A~~~~~~m~~~~p~~-~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 278 (634)
|+++|+++.+..|+. ..+..++..+...++ .++|.+.++++.. |+...+..++..+...++..+|++.++++.+
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q-~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGR-GGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC-HHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 999999998886654 444455566666666 7777777777766 3333332222233334444446666666653
Q ss_pred C-ChhHHHHHHHHHHHcCChHHHHHHhhhCCCC-ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHH
Q 047120 279 R-DVVSWANMIDGYAKLGRVDIARRLFDEMPKR-DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356 (634)
Q Consensus 279 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~ 356 (634)
| +...+..+...+.+.|-...|.++..+-++- +...+..+ +.+.|.+..+... .|+.
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~a~-----~~~~-------- 258 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRMAV-----LPTR-------- 258 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhhcc-----cccc--------
Confidence 3 3445555556666666666666555544320 00011000 0112222221111 1100
Q ss_pred HHHccCC---hHHHHHHHHHHHHc-CC-CCchhH----HHHHHHHhHhcCCHHHHHHHHHhccCC----ChhHHHHHHHH
Q 047120 357 AIAQLGH---IDKGVAIHRYLEKD-QF-SLNGKH----GVALIDMYSKCGSIENAIKVFEQIEDG----SVDHWNAMING 423 (634)
Q Consensus 357 ~~~~~~~---~~~a~~~~~~~~~~-~~-~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~ 423 (634)
...+. .+.|..-++.+... +- ++.... ..-.+-++...+++.++++.|+.+... ...+-..+..+
T Consensus 259 --~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 259 --SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred --cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 01112 23444444544432 21 222122 223455677889999999999999843 23356778899
Q ss_pred HHHcCChHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCc----------ccC---h
Q 047120 424 LAIHGLGELAFDLLMEMERLSI-----EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL----------EPE---L 485 (634)
Q Consensus 424 ~~~~~~~~~A~~~~~~m~~~g~-----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~---~ 485 (634)
|...+++++|..+++.+..... .++......|..++...+++++|..+++.+.+.... .|+ .
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 9999999999999999976431 223334578899999999999999999999872110 122 2
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhc
Q 047120 486 QHYGCMVDILGRAGHIEAARNLIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563 (634)
Q Consensus 486 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 563 (634)
..+..++..+.-.|++.+|++.++++ ..+-|......+...+...|.+.+|+..++.+..++|.+..+....+..+..
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh
Confidence 23456778889999999999999998 3345677889999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhC
Q 047120 564 LGMWNDARRVRSMMKER 580 (634)
Q Consensus 564 ~g~~~~A~~~~~~~~~~ 580 (634)
.|+|++|..+.+.+.+.
T Consensus 497 l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 497 LQEWHQMELLTDDVISR 513 (822)
T ss_pred hhhHHHHHHHHHHHHhh
Confidence 99999999998777554
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.78 E-value=9.2e-14 Score=134.84 Aligned_cols=497 Identities=12% Similarity=0.111 Sum_probs=392.5
Q ss_pred CCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHH
Q 047120 82 KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLI 161 (634)
Q Consensus 82 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 161 (634)
.++..|-..+. -.+.+.|.-++.+..+ .-|.. .-|.-++++...++.|..++....+. ++-+..+|.+-.
T Consensus 378 ~sv~LWKaAVe----lE~~~darilL~rAve--ccp~s---~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa 447 (913)
T KOG0495|consen 378 RSVRLWKAAVE----LEEPEDARILLERAVE--CCPQS---MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAA 447 (913)
T ss_pred chHHHHHHHHh----ccChHHHHHHHHHHHH--hccch---HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHH
Confidence 46666766553 4566678888888877 33433 23445667777889999999988875 566778888777
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--------CChhHHHHHHHHHHhCCChHHHHHHHhhCccC----CCChhHHHHHHHHHH
Q 047120 162 SLYVRCGYLEFARQLFDKMGI--------RDSVSYNSMIDGYVKSGNIESARELFDSMPIR----ERNLISWNSVLNGYA 229 (634)
Q Consensus 162 ~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~p~~~~~~~ll~~~~ 229 (634)
..--.+|+.+...+++++-.. -+...|-.=...+-..|..-.+..+....... ..-..||..-...|.
T Consensus 448 ~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~ 527 (913)
T KOG0495|consen 448 KLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCE 527 (913)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHH
Confidence 777788998888888876421 25556766667777777777777776665543 333467888888888
Q ss_pred hcCCcHHHHHHHHhhCCC---CCchHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 047120 230 QLKSGLQFAWQIFEKMPE---RDLISWNSMLHGCVKCGKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVDIARRL 303 (634)
Q Consensus 230 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (634)
+.+. ++-|..+|....+ .+...|......--..|..+.-..+|++... .....|-.....+-..|++..|+.+
T Consensus 528 k~~~-~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~i 606 (913)
T KOG0495|consen 528 KRPA-IECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVI 606 (913)
T ss_pred hcch-HHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHH
Confidence 8887 9999999988887 3455676666666678889999999988864 3445667777778888999999999
Q ss_pred hhhCCC---CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 047120 304 FDEMPK---RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380 (634)
Q Consensus 304 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 380 (634)
+...-+ .+...|-.-+..-..+..+++|..+|.+.. ...|+...|.--+...--.++.++|.+++++.++. ++
T Consensus 607 l~~af~~~pnseeiwlaavKle~en~e~eraR~llakar---~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp 682 (913)
T KOG0495|consen 607 LDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR---SISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FP 682 (913)
T ss_pred HHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh---ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CC
Confidence 887764 356788888999999999999999999998 56788888877777777889999999999988875 45
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047120 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457 (634)
Q Consensus 381 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 457 (634)
.-...|..+.+.+-+.++++.|.+.|..-.+ ..+..|-.|...--+.|..-+|..+|++.+-.+ .-+...|...++
T Consensus 683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir 761 (913)
T KOG0495|consen 683 DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIR 761 (913)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHH
Confidence 5567888999999999999999999987653 356688888888889999999999999988763 225678999999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 047120 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537 (634)
Q Consensus 458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 537 (634)
.-.+.|+.++|..+..++.. .++.+...|..-|.+..+.++-..+...+++.. -|+.+..++...+.....++.|.
T Consensus 762 ~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar 837 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAR 837 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988876 455667778888998888888888888887765 46667777788888999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCccCCceeEEEEcCEEEEE
Q 047120 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEF 600 (634)
Q Consensus 538 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (634)
..|+++++.+|++.++|..+-..+.+.|.-++-.+++++..... +.-|..|..+++.+...
T Consensus 838 ~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~avSK~i~n~ 898 (913)
T KOG0495|consen 838 EWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAVSKDIKNW 898 (913)
T ss_pred HHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHHhhhHHhc
Confidence 99999999999999999999999999999999999998886653 34566788777666443
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=3.3e-16 Score=145.04 Aligned_cols=440 Identities=15% Similarity=0.131 Sum_probs=313.0
Q ss_pred hHHHHH---HHHhccCChHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHhcCCHHHHHHHHhhCCC--C------ChhHH
Q 047120 121 SASLVL---KACSRLGLIEEGLQIHGLLRKVAFGSDLFLQN-CLISLYVRCGYLEFARQLFDKMGI--R------DSVSY 188 (634)
Q Consensus 121 ~~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~--~------~~~~~ 188 (634)
||+.|. .-|.......+|+..|+-+.+...-|+..... .+-+.+.+...+.+|++.++.... | .....
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 455544 44555667789999999988888777776543 345778888899999998875432 2 12345
Q ss_pred HHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC----------------CCchH
Q 047120 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE----------------RDLIS 252 (634)
Q Consensus 189 ~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~ 252 (634)
+.+.-.|.+.|+++.|+..|+...+..|+..+-..++-++...++ .+...+.|.+++. |+...
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d-~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGD-AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCc-HHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 666667889999999999999988888998887777777777788 8999999988864 22222
Q ss_pred HHHHH-----HHHHhcCC--hHHHH----HHHhhCCCCChh-------------HHH--------HHHHHHHHcCChHHH
Q 047120 253 WNSML-----HGCVKCGK--MDDAQ----ALFDKMPKRDVV-------------SWA--------NMIDGYAKLGRVDIA 300 (634)
Q Consensus 253 ~~~l~-----~~~~~~g~--~~~A~----~~~~~~~~~~~~-------------~~~--------~l~~~~~~~g~~~~A 300 (634)
.+.-+ ..+.+..+ .++++ ++..-+..|+.. .+. .-...|.+.|+++.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 22222 22222221 22222 222222223211 011 112347889999999
Q ss_pred HHHhhhCCCCChhhHHH----H-HHHHHH-cCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHH
Q 047120 301 RRLFDEMPKRDVVACNA----M-MGGYVR-NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYL 374 (634)
Q Consensus 301 ~~~~~~~~~~~~~~~~~----l-~~~~~~-~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 374 (634)
.++++-+.+.|..+-.+ | +--|.+ ..++..|..+-+...... +-+....+.-.......|++++|...+++.
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID--RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc--ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 99998887765443222 2 122233 345666766666555321 122223333333344678999999999999
Q ss_pred HHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 047120 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDIT 451 (634)
Q Consensus 375 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 451 (634)
+...-......| .+.-.+...|++++|++.|-++. ..+......+...|-...+...|++++.+.... +.-|+..
T Consensus 517 l~ndasc~ealf-niglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 517 LNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred HcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 876543333333 34455778899999999998765 567778888899999999999999999887753 3445779
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-Hh
Q 047120 452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRTLLSAC-RN 529 (634)
Q Consensus 452 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-~~ 529 (634)
+..|...|-+.|+-.+|.+.+-.--+ -++-+.++...|...|....-+++|+.+|++. -+.|+..-|..++..| .+
T Consensus 595 lskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 99999999999999999988766543 34567889889999999999999999999998 6789999999888775 67
Q ss_pred cCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCc
Q 047120 530 YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMW 567 (634)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 567 (634)
.|++.+|..+|+...+..|.+.+....|+.++...|..
T Consensus 673 sgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred cccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99999999999999999999999999999999888754
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=3.1e-13 Score=124.84 Aligned_cols=330 Identities=12% Similarity=0.093 Sum_probs=167.7
Q ss_pred cccccCCCCC--CChhhHHHHHHhccCchHHHHHHHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccC
Q 047120 2 FVSANYNQPC--NSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR 79 (634)
Q Consensus 2 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~ 79 (634)
|.|.+...+. .+-++++. +.+.+..++..-+++.|+..|.+.+..+--.|++.-+..++-+-.---.+.|-.|.+.|
T Consensus 105 F~P~~l~~~~~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~ 183 (625)
T KOG4422|consen 105 FRPRHLADPLQVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG 183 (625)
T ss_pred cCchhcCCchhhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc
Confidence 5555544442 22344444 45567889999999999999999999887777665443322111122223333443333
Q ss_pred C-------------------CCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHH
Q 047120 80 E-------------------KKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQ 140 (634)
Q Consensus 80 ~-------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 140 (634)
- +....+|..+|.++|+--..++|.++|++-.+...+.+..+||.+|.+-.-. ....
T Consensus 184 E~S~~sWK~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~ 259 (625)
T KOG4422|consen 184 EDSTSSWKSGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKK 259 (625)
T ss_pred cccccccccccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHH
Confidence 1 2244556666666666666666666666666555556666666666543321 1155
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHH----hhCC----CCChhHHHHHHHHHHhCCChHH-HHHHHhhC
Q 047120 141 IHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLF----DKMG----IRDSVSYNSMIDGYVKSGNIES-ARELFDSM 211 (634)
Q Consensus 141 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m 211 (634)
+..+|....+.||..++|+++++.++.|+++.|.+.+ .+|+ +|...+|..+|..+.+.+++.+ |...+.++
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 5666666666666666666666666666555444332 2222 2445555555555555554433 22222111
Q ss_pred c----cC--CCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHH
Q 047120 212 P----IR--ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWA 285 (634)
Q Consensus 212 ~----~~--~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 285 (634)
. .+ .|-.. .|...|...+..|.+..+.+-|.++..-....
T Consensus 340 ~N~ltGK~fkp~~p----------------------------~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg------ 385 (625)
T KOG4422|consen 340 QNSLTGKTFKPITP----------------------------TDNKFFQSAMSICSSLRDLELAYQVHGLLKTG------ 385 (625)
T ss_pred HHhhccCcccCCCC----------------------------chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcC------
Confidence 1 11 11000 12233333344444444444333332211100
Q ss_pred HHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChH
Q 047120 286 NMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365 (634)
Q Consensus 286 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 365 (634)
.+++..-..+ ....-|..+....|+....+..+.+|+.|... -+-|+..+...++++....+.++
T Consensus 386 ---------~N~~~ig~~~-----~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~-~y~p~~~~m~~~lrA~~v~~~~e 450 (625)
T KOG4422|consen 386 ---------DNWKFIGPDQ-----HRNFYYRKFFDLICQMESIDVTLKWYEDLVPS-AYFPHSQTMIHLLRALDVANRLE 450 (625)
T ss_pred ---------CchhhcChHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-eecCCchhHHHHHHHHhhcCcch
Confidence 0000000000 01112344555556666666666677766655 45666667777777776777777
Q ss_pred HHHHHHHHHHHcCCCCchhH
Q 047120 366 KGVAIHRYLEKDQFSLNGKH 385 (634)
Q Consensus 366 ~a~~~~~~~~~~~~~~~~~~ 385 (634)
-..+++.+++..|...+...
T Consensus 451 ~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 451 VIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred hHHHHHHHHHHhhhhhhHHH
Confidence 77777776666654444333
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.71 E-value=7e-12 Score=122.07 Aligned_cols=504 Identities=11% Similarity=0.011 Sum_probs=392.7
Q ss_pred HHHHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHH
Q 047120 32 QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLML 111 (634)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 111 (634)
+|+....+ .++-++-.|...+.. ..+ +.|+.++.+..+.= +.+.. |.-+|++-.-++.|..++++.+
T Consensus 367 RVlRKALe-~iP~sv~LWKaAVel----E~~---~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaR 433 (913)
T KOG0495|consen 367 RVLRKALE-HIPRSVRLWKAAVEL----EEP---EDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAR 433 (913)
T ss_pred HHHHHHHH-hCCchHHHHHHHHhc----cCh---HHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544 235566666555443 344 67888888776432 22334 4455667778999999999998
Q ss_pred HCCCCCCcchHHHHHHHHhccCChHHHHHHHHHH----HHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----
Q 047120 112 DNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLL----RKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI----- 182 (634)
Q Consensus 112 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 182 (634)
+ .++-+...|.+....--+.|+.+....+..+- ...|+..+..-|-.=...+-+.|..-.+..+......
T Consensus 434 e-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEe 512 (913)
T KOG0495|consen 434 E-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEE 512 (913)
T ss_pred h-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcccc
Confidence 8 46677778877777777889998888877654 4667888888887777788888888777777665532
Q ss_pred -CChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCCh-hHHHHHHHHHHhcCCcHHHHHHHHhhCCC--C-CchHHHHHH
Q 047120 183 -RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNL-ISWNSVLNGYAQLKSGLQFAWQIFEKMPE--R-DLISWNSML 257 (634)
Q Consensus 183 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~-~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~ 257 (634)
.-..+|+.-...|.+.+.++-|..+|....+..|.. ..|......--..|. .+....+|++... | ....|....
T Consensus 513 ed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt-~Esl~Allqkav~~~pkae~lwlM~a 591 (913)
T KOG0495|consen 513 EDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGT-RESLEALLQKAVEQCPKAEILWLMYA 591 (913)
T ss_pred chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCc-HHHHHHHHHHHHHhCCcchhHHHHHH
Confidence 234589999999999999999999999998885654 445444444444455 8999999998876 3 445666777
Q ss_pred HHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHhhhCCC--CChhhHHHHHHHHHHcCCchHHH
Q 047120 258 HGCVKCGKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVDIARRLFDEMPK--RDVVACNAMMGGYVRNGYSMKAL 332 (634)
Q Consensus 258 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~ 332 (634)
+.+-..|+...|..++....+ .+...|-+-+........++.|..+|.+... ++...|..-+..---.+..++|+
T Consensus 592 ke~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 592 KEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHH
Confidence 788889999999999998865 3567888889999999999999999998764 67778877777777789999999
Q ss_pred HHHHHHHhcCCCCCCH-hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc-
Q 047120 333 EIFDNMQCELYLHPDD-ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE- 410 (634)
Q Consensus 333 ~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 410 (634)
+++++..+. -|+- ..|..+.+.+.+.++++.|...|..-.+. .+..+..|-.|...--+.|.+-.|..++++..
T Consensus 672 rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 672 RLLEEALKS---FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHh---CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 999999854 5665 57777888888999999999888765543 45567889999999999999999999999876
Q ss_pred --CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHH
Q 047120 411 --DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY 488 (634)
Q Consensus 411 --~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 488 (634)
..+...|-..|..-.+.|..+.|..+..+..+. +.-+...|.--|...-+.++-......+++. ..|+.+.
T Consensus 748 kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc------e~dphVl 820 (913)
T KOG0495|consen 748 KNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EHDPHVL 820 (913)
T ss_pred cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc------cCCchhH
Confidence 346778999999999999999999999998876 3444568888888877777766665555544 4577788
Q ss_pred HHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 047120 489 GCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF 561 (634)
Q Consensus 489 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (634)
..+...+....++++|.+-|.+. ...|| ..+|..+...+..+|.-+.-.+++.+...-+|.....|..+..--
T Consensus 821 laia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 821 LAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKDI 895 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhhH
Confidence 88999999999999999999987 66666 678888999999999999999999999999999888888776543
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=2.6e-12 Score=130.02 Aligned_cols=538 Identities=13% Similarity=0.068 Sum_probs=362.9
Q ss_pred HHHHHhccCchHHHHHHHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcC
Q 047120 18 LLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHG 97 (634)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 97 (634)
+..+-+.|++..+..|....++.. +-...+|..|-..|-..|+. +++...+-..-..+++ |..-|-.+.....+.
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~---eK~l~~~llAAHL~p~-d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDI---EKALNFWLLAAHLNPK-DYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccH---HHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhc
Confidence 334556699999999999999876 55778899999999999998 9998888766555543 668899999999999
Q ss_pred CCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHH----HHHHHHHHhcCCHHHH
Q 047120 98 LDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQ----NCLISLYVRCGYLEFA 173 (634)
Q Consensus 98 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~li~~~~~~g~~~~A 173 (634)
|+++.|.-.|.+.++.. +++...+-.-...|-+.|+...|...|.++.....+.|..-. ..++..+...++-+.|
T Consensus 221 ~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred ccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999854 334444455567788999999999999999987543232222 2345566677777899
Q ss_pred HHHHhhCCC-----CChhHHHHHHHHHHhCCChHHHHHHHhhCccC------------------------CCChhHHH--
Q 047120 174 RQLFDKMGI-----RDSVSYNSMIDGYVKSGNIESARELFDSMPIR------------------------ERNLISWN-- 222 (634)
Q Consensus 174 ~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------~p~~~~~~-- 222 (634)
.+.++.... -+...++.++..|.+...++.|......+... .|+...|.
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 998887654 24567889999999999999999888777651 11111111
Q ss_pred --HHHHHHHhcCCcHHHHHHHHhhCCC------CCchHHHHHHHHHHhcCChHHHHHHHhhCCC----CChhHHHHHHHH
Q 047120 223 --SVLNGYAQLKSGLQFAWQIFEKMPE------RDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDG 290 (634)
Q Consensus 223 --~ll~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~ 290 (634)
.+.-++.+... .+....+...... .++..|..+..++...|++.+|+.+|..+.. .+...|-.+..+
T Consensus 380 v~rl~icL~~L~~-~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 VIRLMICLVHLKE-RELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hHhHhhhhhcccc-cchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 12223333333 3333333333222 3556788889999999999999999999875 457789999999
Q ss_pred HHHcCChHHHHHHhhhCCCC---ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcC-------CCCCCHhHHHHHHHHHHc
Q 047120 291 YAKLGRVDIARRLFDEMPKR---DVVACNAMMGGYVRNGYSMKALEIFDNMQCEL-------YLHPDDASLVIVLSAIAQ 360 (634)
Q Consensus 291 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-------~~~p~~~~~~~ll~~~~~ 360 (634)
|...|..++|...|+.+..- +...--.|...+.+.|+.++|++.+..+.... +..|+..........+..
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 99999999999999988753 33455566678889999999999999865221 234444455555666778
Q ss_pred cCChHHHHHHHHHHHHcC----------------------CCCchhHHHHHHHHhHhcCCHHHHHHHHHhc--------c
Q 047120 361 LGHIDKGVAIHRYLEKDQ----------------------FSLNGKHGVALIDMYSKCGSIENAIKVFEQI--------E 410 (634)
Q Consensus 361 ~~~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~ 410 (634)
.|+.++-..+-..|+... ..........++.+-.+.++.....+-...- .
T Consensus 539 ~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~ 618 (895)
T KOG2076|consen 539 VGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELR 618 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhc
Confidence 888887666555544321 0111122222333333333322222111110 0
Q ss_pred CCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCH---HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCc
Q 047120 411 DGSV----DHWNAMINGLAIHGLGELAFDLLMEMERLSIE--PDD---ITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481 (634)
Q Consensus 411 ~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 481 (634)
.-+. ..+.-++.++++.+++++|+.+...+...... ++. ..-...+.++...+++..|...++.+....+.
T Consensus 619 ~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~ 698 (895)
T KOG2076|consen 619 GLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQF 698 (895)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence 1111 23456778899999999999999988875422 222 12344566778899999999999999875333
Q ss_pred ccC---hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHH
Q 047120 482 EPE---LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPND--VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555 (634)
Q Consensus 482 ~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (634)
..+ ...|+.......+.|+-.-=.+++..+ ...|+. .............+.+.-|...+-++...+|++|-.-.
T Consensus 699 ~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl 778 (895)
T KOG2076|consen 699 YLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINL 778 (895)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHH
Confidence 322 344665666666666655545555444 223333 22222223356678999999999999999999999877
Q ss_pred HHHHHHh
Q 047120 556 LLSNMFA 562 (634)
Q Consensus 556 ~l~~~~~ 562 (634)
.++.++.
T Consensus 779 ~lglafi 785 (895)
T KOG2076|consen 779 CLGLAFI 785 (895)
T ss_pred HHHHHHH
Confidence 7777665
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=4.8e-13 Score=124.35 Aligned_cols=467 Identities=14% Similarity=0.134 Sum_probs=297.4
Q ss_pred HHhccCchHH----------HH-HHHHHHHhCCCCch------hhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCC
Q 047120 21 LRKCKTLNDV----------NQ-IHARMITTGFIKNT------HLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKD 83 (634)
Q Consensus 21 ~~~~~~~~~~----------~~-~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 83 (634)
-+.|+++..+ ++ ++++-.+.|.+... .+...|.+-|....-. .+|+..++-+.+...-||
T Consensus 159 an~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~---~ealntyeiivknkmf~n 235 (840)
T KOG2003|consen 159 ANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMT---AEALNTYEIIVKNKMFPN 235 (840)
T ss_pred HhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHH---HHHhhhhhhhhcccccCC
Confidence 3678888765 13 33333344543322 2334444455444444 888888888877777777
Q ss_pred cccHH-HHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchH----HHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHH
Q 047120 84 PFLWN-AIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSA----SLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQN 158 (634)
Q Consensus 84 ~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 158 (634)
....- .+...|.+.+++.+|+..|+..+..-...+..+- +.+-..+.+.|.++.|..-|+...+. .|+-.+--
T Consensus 236 ag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~ 313 (840)
T KOG2003|consen 236 AGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAAL 313 (840)
T ss_pred CceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhh
Confidence 65442 3556777888999999999877763222222332 33333467889999999999988774 57777666
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC----------------CChhHH-----HHHHHHHHhCCCh--HHHHHHHhhCccC-
Q 047120 159 CLISLYVRCGYLEFARQLFDKMGI----------------RDSVSY-----NSMIDGYVKSGNI--ESARELFDSMPIR- 214 (634)
Q Consensus 159 ~li~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~-----~~li~~~~~~g~~--~~A~~~~~~m~~~- 214 (634)
.|+-++..-|+-++..+.|.+|.. |+.... +-.++.+-+.+.. ++++-.--++...
T Consensus 314 nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapv 393 (840)
T KOG2003|consen 314 NLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPV 393 (840)
T ss_pred hhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccc
Confidence 667777778999999999888732 122222 2222333222221 1221111111110
Q ss_pred -CCChhH---H------------------HHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHH-----HHh-cCCh
Q 047120 215 -ERNLIS---W------------------NSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHG-----CVK-CGKM 266 (634)
Q Consensus 215 -~p~~~~---~------------------~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~-----~~~-~g~~ 266 (634)
.|+-.. | ..-...+.+.++ ++.|.++++-+...|..+-.....- |.+ -.++
T Consensus 394 i~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d-~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~ 472 (840)
T KOG2003|consen 394 IAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD-IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDF 472 (840)
T ss_pred cccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC-HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccch
Confidence 122110 0 011223456777 8999888888777555443332221 222 3456
Q ss_pred HHHHHHHhhCCCCC---hhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHH---HHHHHcCCchHHHHHHHHHHh
Q 047120 267 DDAQALFDKMPKRD---VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM---GGYVRNGYSMKALEIFDNMQC 340 (634)
Q Consensus 267 ~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~m~~ 340 (634)
.+|.+.-+.....| ......-.+.-...|++++|.+.+++....|...-.+|. -.+-..|+.++|++.|-++..
T Consensus 473 ~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~ 552 (840)
T KOG2003|consen 473 ADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHA 552 (840)
T ss_pred hHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH
Confidence 67777666655422 222222233445568889999888888877665444333 346677888999988887762
Q ss_pred cCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHH
Q 047120 341 ELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHW 417 (634)
Q Consensus 341 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~ 417 (634)
- +.-+......+...|....+...|++++.+.... ++.|+.+.+.|.+.|-+.|+-..|.+.+-.-- ..+..+.
T Consensus 553 i--l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~i 629 (840)
T KOG2003|consen 553 I--LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETI 629 (840)
T ss_pred H--HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHH
Confidence 2 2345566677777888888888888887766543 56678888889999999998888887754332 4466676
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHh
Q 047120 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA-HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496 (634)
Q Consensus 418 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 496 (634)
.-|..-|....-+++++.+|++..- ++|+..-|-.++..|. +.|++..|..+|+...+ .++.|.....-|++.+.
T Consensus 630 ewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~ 705 (840)
T KOG2003|consen 630 EWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAG 705 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhc
Confidence 7777778888888899999988764 6888888887777654 57899999999988876 45677888888888877
Q ss_pred ccCC
Q 047120 497 RAGH 500 (634)
Q Consensus 497 ~~g~ 500 (634)
..|.
T Consensus 706 dlgl 709 (840)
T KOG2003|consen 706 DLGL 709 (840)
T ss_pred cccc
Confidence 7774
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.65 E-value=1e-11 Score=125.80 Aligned_cols=517 Identities=15% Similarity=0.100 Sum_probs=341.3
Q ss_pred hhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCh
Q 047120 56 FSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135 (634)
Q Consensus 56 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 135 (634)
....|+. ++|..++.+..+..+ .+...|..|...|-..|+.++++..+-..-. -.+-|...|..+.....++|++
T Consensus 149 lfarg~~---eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH-L~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 149 LFARGDL---EEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAH-LNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHhCCH---HHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcccH
Confidence 3445988 999999999987764 4788999999999999999999887754433 2233556788888888899999
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C--Chh----HHHHHHHHHHhCCChHHHHHH
Q 047120 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI--R--DSV----SYNSMIDGYVKSGNIESAREL 207 (634)
Q Consensus 136 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~--~~~----~~~~li~~~~~~g~~~~A~~~ 207 (634)
++|.-+|.++++..+ ++....-.-...|-+.|+...|..-|.++-. | |.. .--.+++.+...++-+.|++.
T Consensus 224 ~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999998753 3444555567788899999999988888754 2 111 233446677778888999998
Q ss_pred HhhCccC---CCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC--------------------------CCchHHHH---
Q 047120 208 FDSMPIR---ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE--------------------------RDLISWNS--- 255 (634)
Q Consensus 208 ~~~m~~~---~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--------------------------~~~~~~~~--- 255 (634)
+...... .-+...++.++..+.+... .+.+......... ++..+|..
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q-~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQ-SDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHH-HHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 8877663 3334455566666555444 5555444433221 11111211
Q ss_pred -HHHHH--HhcCChHHHHHHHhhCC----CCChhHHHHHHHHHHHcCChHHHHHHhhhCCC----CChhhHHHHHHHHHH
Q 047120 256 -MLHGC--VKCGKMDDAQALFDKMP----KRDVVSWANMIDGYAKLGRVDIARRLFDEMPK----RDVVACNAMMGGYVR 324 (634)
Q Consensus 256 -l~~~~--~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~ 324 (634)
++-++ .+.++..+++.-+-.-. ..+...|.-+..+|...|++.+|+++|..+.. .+...|-.+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 11122 23334444433332221 13456788889999999999999999999875 356789999999999
Q ss_pred cCCchHHHHHHHHHHhcCCCCCCH-hHHHHHHHHHHccCChHHHHHHHHHHH--------HcCCCCchhHHHHHHHHhHh
Q 047120 325 NGYSMKALEIFDNMQCELYLHPDD-ASLVIVLSAIAQLGHIDKGVAIHRYLE--------KDQFSLNGKHGVALIDMYSK 395 (634)
Q Consensus 325 ~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~ 395 (634)
.|.+++|++.|+.... ..|+. ..-..|-..+.+.|+.++|.+.+..+. ..+..|+........+.+..
T Consensus 462 l~e~e~A~e~y~kvl~---~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLI---LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HhhHHHHHHHHHHHHh---cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 9999999999999984 46654 344556666788999999999988844 33456666666677788888
Q ss_pred cCCHHHHHHHHHhccCC--------------------------ChhHHHHHHHHHHHcCChHHHHHH------HHHHHHC
Q 047120 396 CGSIENAIKVFEQIEDG--------------------------SVDHWNAMINGLAIHGLGELAFDL------LMEMERL 443 (634)
Q Consensus 396 ~~~~~~A~~~~~~~~~~--------------------------~~~~~~~li~~~~~~~~~~~A~~~------~~~m~~~ 443 (634)
.|+.++-..+-..+..+ ........+.+-.+.++.....+- +..-...
T Consensus 539 ~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~ 618 (895)
T KOG2076|consen 539 VGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELR 618 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhc
Confidence 88888755544433211 111122222333333332211111 1111222
Q ss_pred CCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChh----HHHHHHHHHhccCCHHHHHHHHHhC-C----
Q 047120 444 SIEPDD--ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ----HYGCMVDILGRAGHIEAARNLIEDM-P---- 512 (634)
Q Consensus 444 g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~-~---- 512 (634)
|+.-+. ..+.-++.++++.+++++|..+...+....-+..+.. .-...+.+....+++..|...++.+ .
T Consensus 619 ~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~ 698 (895)
T KOG2076|consen 619 GLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQF 698 (895)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence 333332 2456677788899999999999888877433333333 2344556677889999999999887 1
Q ss_pred -CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-CchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 513 -MEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN-SSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 513 -~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
..|. ...|+...+...+.|+-.--.+.+..+....|.+ +..+...+..+...+.+..|...+-++-....
T Consensus 699 ~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~p 771 (895)
T KOG2076|consen 699 YLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNP 771 (895)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCC
Confidence 1333 3356656666666666655566666666666666 66777778888899999999998877755543
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.3e-11 Score=115.66 Aligned_cols=489 Identities=12% Similarity=0.064 Sum_probs=347.8
Q ss_pred CCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHH
Q 047120 82 KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLI 161 (634)
Q Consensus 82 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 161 (634)
.+...|-.-...-...+++..|.++|++.+... .-+...|..-+..-.+...+..|..+++++...-+..|. .|-..+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHH
Confidence 455666666666667788889999999988733 234445666667777888899999999998876444333 444555
Q ss_pred HHHHhcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHH
Q 047120 162 SLYVRCGYLEFARQLFDKMG--IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAW 239 (634)
Q Consensus 162 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~ 239 (634)
.+--..|++..|.++|++.. +|+...|++.|+--.+-+.++.|..+|++..-..|++.+|.....--.+.|. +..+.
T Consensus 149 ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~-~~~aR 227 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGN-VALAR 227 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCc-HHHHH
Confidence 55667799999999998865 5889999999999999999999999999988878999988888877778888 99999
Q ss_pred HHHhhCCC--C----CchHHHHHHHHHHhcCChHHHHHHHhhCCC--C---ChhHHHHHHHHHHHcCChHHHHHHh----
Q 047120 240 QIFEKMPE--R----DLISWNSMLHGCVKCGKMDDAQALFDKMPK--R---DVVSWANMIDGYAKLGRVDIARRLF---- 304 (634)
Q Consensus 240 ~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~---- 304 (634)
.+++...+ . +...+.++..--.++..++.|.-+|.-.++ | ....|..+...--+-|+........
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 99988776 2 234455555555677788888888776653 2 2344555555545556654443332
Q ss_pred ----hhCCCC---ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCH-------hHHHHHHHHH---HccCChHHH
Q 047120 305 ----DEMPKR---DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD-------ASLVIVLSAI---AQLGHIDKG 367 (634)
Q Consensus 305 ----~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-------~~~~~ll~~~---~~~~~~~~a 367 (634)
+.+.+. |-.+|--.++.-...|+.+...++|++.... ++|-. ..|..+=-+| ....+.+.+
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan--vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN--VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc--CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 222222 5567888888888889999999999999854 66632 1232222222 457899999
Q ss_pred HHHHHHHHHcCCCCchhHHHH----HHHHhHhcCCHHHHHHHHHhcc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047120 368 VAIHRYLEKDQFSLNGKHGVA----LIDMYSKCGSIENAIKVFEQIE--DGSVDHWNAMINGLAIHGLGELAFDLLMEME 441 (634)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 441 (634)
.++++..++. ++....++.- ......++.++..|.+++.... -|...++...|..-.+.++++.+..++++.+
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999883 4545455544 3445568899999999998876 4667788888999999999999999999999
Q ss_pred HCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHH
Q 047120 442 RLSIEP-DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVI 519 (634)
Q Consensus 442 ~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 519 (634)
+- .| +..+|......-...|+.+.|..+|+.+.....+......|.+.|+.=...|.+++|..+++++ ...+...+
T Consensus 465 e~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kv 542 (677)
T KOG1915|consen 465 EF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKV 542 (677)
T ss_pred hc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchH
Confidence 86 44 4678888888888899999999999999873222233445777777778999999999999987 44556667
Q ss_pred HHHHHHHHH-----hcC-----------ChhHHHHHHHHHhccCCCC--Cc----hHHHHHHHHhcCCCchHHHHHHHHH
Q 047120 520 WRTLLSACR-----NYE-----------NLNVGEPVAKHLIGMDSSN--SS----SYVLLSNMFAGLGMWNDARRVRSMM 577 (634)
Q Consensus 520 ~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~~~p~~--~~----~~~~l~~~~~~~g~~~~A~~~~~~~ 577 (634)
|-+....-. +.| .+..|..+|+++.....+. -. .+-.+-++-...|.-.+...+-++|
T Consensus 543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 777665433 334 5678888888886543211 11 2223333334456555555555555
Q ss_pred H
Q 047120 578 K 578 (634)
Q Consensus 578 ~ 578 (634)
.
T Consensus 623 P 623 (677)
T KOG1915|consen 623 P 623 (677)
T ss_pred c
Confidence 3
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=1.8e-11 Score=113.46 Aligned_cols=427 Identities=12% Similarity=0.100 Sum_probs=220.5
Q ss_pred cccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHh--ccCChHHH-HHHHHHHHHhcCCCChhHHHHH
Q 047120 84 PFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS--RLGLIEEG-LQIHGLLRKVAFGSDLFLQNCL 160 (634)
Q Consensus 84 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 160 (634)
+.+=|.|+... .+|...++.-+|+.|+..|+..+...-..+++..+ ...++--+ .+.|-.|.+.|-. +..+|
T Consensus 116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 34556665544 56788889999999999888777776666665433 22222211 2334444444422 22233
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccC--CCChhHHHHHHHHHHhcCCcHHHH
Q 047120 161 ISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFA 238 (634)
Q Consensus 161 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~p~~~~~~~ll~~~~~~~~~~~~a 238 (634)
+.|++.+ -+|+ ...+...+|..||.++++--..+.|.++|++.... ..+..+||.+|.+-+-..+ -+..
T Consensus 191 -----K~G~vAd--L~~E-~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-K~Lv 261 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFE-TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-KKLV 261 (625)
T ss_pred -----ccccHHH--HHHh-hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-HHHH
Confidence 2344433 3343 33445668888888888888888888888877655 4556667776665544332 2222
Q ss_pred HHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHH----HHhhhCC----CC
Q 047120 239 WQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIAR----RLFDEMP----KR 310 (634)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~----~~ 310 (634)
.++...-. .||..|+|+++.+..+.|+++.|. +++.+|+ +|
T Consensus 262 ~EMisqkm-------------------------------~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVeP 310 (625)
T KOG4422|consen 262 AEMISQKM-------------------------------TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEP 310 (625)
T ss_pred HHHHHhhc-------------------------------CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCc
Confidence 22222212 355555555555555555555443 2233332 35
Q ss_pred ChhhHHHHHHHHHHcCCch-HHHHHHHHHHhcC---CC---CC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcC----
Q 047120 311 DVVACNAMMGGYVRNGYSM-KALEIFDNMQCEL---YL---HP-DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ---- 378 (634)
Q Consensus 311 ~~~~~~~l~~~~~~~g~~~-~A~~~~~~m~~~~---~~---~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---- 378 (634)
...+|..+|..+++.++.. .|..++.++...- .+ .| |..-|...+..|.+..+.+.|.++..-+....
T Consensus 311 sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ 390 (625)
T KOG4422|consen 311 SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF 390 (625)
T ss_pred chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh
Confidence 5566666666666655543 2344444433210 11 22 23445555666666666666665554443211
Q ss_pred CCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047120 379 FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458 (634)
Q Consensus 379 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 458 (634)
+.|+.. ...-|..+....++....+.-+..|+.|.-.-.-|+..+...++++
T Consensus 391 ig~~~~----------------------------~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA 442 (625)
T KOG4422|consen 391 IGPDQH----------------------------RNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRA 442 (625)
T ss_pred cChHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHH
Confidence 111110 0112233334444444455555555555544444555555555555
Q ss_pred HhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccC--------------------CHHHHHH-HHHhC-CCCCC
Q 047120 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG--------------------HIEAARN-LIEDM-PMEPN 516 (634)
Q Consensus 459 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------------------~~~~A~~-~~~~~-~~~p~ 516 (634)
..-.+.++-.-++|..+.. +|..........+...+++.. ++.++.+ .-.++ ..+-.
T Consensus 443 ~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~ 521 (625)
T KOG4422|consen 443 LDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWP 521 (625)
T ss_pred HhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCC
Confidence 5555555555555555444 332222222222222222222 0111110 01111 23344
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccC---CCCCc--hHHHHHHHHhcCCCchHHHHHHHHHHhCCCcc
Q 047120 517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMD---SSNSS--SYVLLSNMFAGLGMWNDARRVRSMMKERNLKK 584 (634)
Q Consensus 517 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 584 (634)
....+..+-.+.+.|..++|.+++....+.. |..|. +...+.+.-........|..+++-|...+..+
T Consensus 522 ~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 522 ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 5566666667888999999999988875543 33332 23345555566777888899988887776654
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=3.8e-13 Score=126.46 Aligned_cols=214 Identities=16% Similarity=0.143 Sum_probs=174.1
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHH
Q 047120 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDL 436 (634)
Q Consensus 360 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~ 436 (634)
-.|+.-.+..-++..++....+ ...|--+..+|...++.++....|++.. +.++.+|..=...+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 4577888888888888765333 3336667778999999999999998876 44777888888888889999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCC
Q 047120 437 LMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PME 514 (634)
Q Consensus 437 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 514 (634)
|++.+.. .|+ ...|.-+.-+..+.++++++...|++.+++ ++.-+++|+.....+..++++++|.+.|+.. .+.
T Consensus 417 F~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999874 665 457777777778899999999999999874 4555788999999999999999999999987 444
Q ss_pred CC---------HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 515 PN---------DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 515 p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
|. +.+-.+++..-.+ +++..|+.+++++++++|....+|..|+.+..+.|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44 2333334433333 8999999999999999999999999999999999999999999998743
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=1.3e-15 Score=145.53 Aligned_cols=257 Identities=17% Similarity=0.195 Sum_probs=113.4
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh
Q 047120 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASL-VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395 (634)
Q Consensus 317 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 395 (634)
.+...+.+.|++++|+++++..... ...|+...| ..+...+...++.+.|...++.+...+.. ++..+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~-~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQK-IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cc
Confidence 3456677788888888888654433 113444433 33444556677888888888888776532 55666677776 68
Q ss_pred cCCHHHHHHHHHhcc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 047120 396 CGSIENAIKVFEQIE--DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS-IEPDDITFTGLLNACAHAGLVKEGLLCF 472 (634)
Q Consensus 396 ~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 472 (634)
.+++++|.+++.... .+++..+..++..+.+.++++++..+++.+.... ..++...|..+...+.+.|+.++|++.+
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888999988887664 3466678888889999999999999999987643 2345678888889999999999999999
Q ss_pred HHhHHhcCccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120 473 ELMRRIHKLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549 (634)
Q Consensus 473 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (634)
+++.+. .| |......++..+...|+.+++.++++.. ..+.|+..+..+..++...|+.++|...++++.+.+|.
T Consensus 170 ~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 999874 45 4777889999999999999988888776 22456667889999999999999999999999999999
Q ss_pred CCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 550 NSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 550 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
||.....+++++...|+.++|.++.+++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 999999999999999999999999887643
No 38
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.62 E-value=5.3e-10 Score=109.12 Aligned_cols=544 Identities=15% Similarity=0.151 Sum_probs=312.0
Q ss_pred CChhhHHHHHHhccCchHHHHHHHHHHHh------CCCCchhhhhHHHHHh---------------------hcCCCCCC
Q 047120 12 NSTQSTLLLLRKCKTLNDVNQIHARMITT------GFIKNTHLTTKLVASF---------------------SSSPCTPL 64 (634)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~li~~~---------------------~~~~~~~~ 64 (634)
+.....+..-++|..+.-..+||...++. +..|+..+|-.+=+.+ .+.|++
T Consensus 41 p~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~i-- 118 (835)
T KOG2047|consen 41 PDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLI-- 118 (835)
T ss_pred ChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchH--
Confidence 44555566668888888777888777643 5566666665554444 222333
Q ss_pred HHHHHHHHHhccc-cCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHH
Q 047120 65 TEFARYIFFKYHA-FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHG 143 (634)
Q Consensus 65 ~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 143 (634)
..-+..|++... ..+..-...|...+......+-++-++.+|++.++ +.|.. -.--+..++..++.++|.+.+.
T Consensus 119 -T~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P~~--~eeyie~L~~~d~~~eaa~~la 193 (835)
T KOG2047|consen 119 -TRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--VAPEA--REEYIEYLAKSDRLDEAAQRLA 193 (835)
T ss_pred -HHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--cCHHH--HHHHHHHHHhccchHHHHHHHH
Confidence 333344443221 11111223344444444444555555555555444 22222 3334444455555555555554
Q ss_pred HHHHhc------CCCChhHHHHHHHHHHhcCCH---HHHHHHHhhCCC--CC--hhHHHHHHHHHHhCCChHHHHHHHhh
Q 047120 144 LLRKVA------FGSDLFLQNCLISLYVRCGYL---EFARQLFDKMGI--RD--SVSYNSMIDGYVKSGNIESARELFDS 210 (634)
Q Consensus 144 ~~~~~g------~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~ 210 (634)
..+... .+.+-..|.-+-...++.-+. -....+++.+.. +| ...|++|.+-|++.|.+++|.++|++
T Consensus 194 ~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyee 273 (835)
T KOG2047|consen 194 TVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEE 273 (835)
T ss_pred HhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 443211 122223333333333322211 112222222221 12 23689999999999999999999998
Q ss_pred CccCCCChhHHHHHHHHHHhcCC---------------------cHHHHHHHHhhCCCC---------------CchHHH
Q 047120 211 MPIRERNLISWNSVLNGYAQLKS---------------------GLQFAWQIFEKMPER---------------DLISWN 254 (634)
Q Consensus 211 m~~~~p~~~~~~~ll~~~~~~~~---------------------~~~~a~~~~~~~~~~---------------~~~~~~ 254 (634)
....-.....|+.+.+.|+.... +++....-|+.+... ++..|.
T Consensus 274 ai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~ 353 (835)
T KOG2047|consen 274 AIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWH 353 (835)
T ss_pred HHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHH
Confidence 87765555566666666654211 122222333332220 111121
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC---C------ChhHHHHHHHHHHHcCChHHHHHHhhhCCCCCh-------hhHHHH
Q 047120 255 SMLHGCVKCGKMDDAQALFDKMPK---R------DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV-------VACNAM 318 (634)
Q Consensus 255 ~l~~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~l 318 (634)
.-+ -+..|+..+-...|.+..+ | -...|..+.+.|-..|+++.|..+|++..+.+- .+|..-
T Consensus 354 kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~w 431 (835)
T KOG2047|consen 354 KRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAW 431 (835)
T ss_pred hhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHH
Confidence 111 1234555555555655542 1 234678899999999999999999999887332 345555
Q ss_pred HHHHHHcCCchHHHHHHHHHHhcC----------CCCC------CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc
Q 047120 319 MGGYVRNGYSMKALEIFDNMQCEL----------YLHP------DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN 382 (634)
Q Consensus 319 ~~~~~~~g~~~~A~~~~~~m~~~~----------~~~p------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 382 (634)
...=.+..+++.|+++++....-. +.++ +...|...+..-...|-++....+++.+++..+. +
T Consensus 432 aemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-T 510 (835)
T KOG2047|consen 432 AEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-T 510 (835)
T ss_pred HHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-C
Confidence 555566788899999888775321 0111 1123445555556678888889999999887653 4
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhccC----CCh-hHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCCHHHHHH
Q 047120 383 GKHGVALIDMYSKCGSIENAIKVFEQIED----GSV-DHWNAMINGLAIH---GLGELAFDLLMEMERLSIEPDDITFTG 454 (634)
Q Consensus 383 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~-~~~~~li~~~~~~---~~~~~A~~~~~~m~~~g~~p~~~~~~~ 454 (634)
+.+.-.....+-...-++++.++|++-.. |++ ..|+..+.-+.+. ...+.|..+|++..+ |++|...-+..
T Consensus 511 Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiy 589 (835)
T KOG2047|consen 511 PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIY 589 (835)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence 44444445556667778999999998652 333 3688777666542 358999999999998 67777553333
Q ss_pred HH--HHHhccCCHHHHHHHHHHhHHhcCcccC--hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHH---HH
Q 047120 455 LL--NACAHAGLVKEGLLCFELMRRIHKLEPE--LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRTLL---SA 526 (634)
Q Consensus 455 ll--~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~---~~ 526 (634)
|+ ..-.+-|-...|..+++++.. ++++. ..+|+..|.--...=-......+++++ ..-||...-...+ ..
T Consensus 590 LlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdl 667 (835)
T KOG2047|consen 590 LLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADL 667 (835)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 33 333456888899999999876 44443 455777765433222223333444443 2235544333222 33
Q ss_pred HHhcCChhHHHHHHHHHhccCCC--CCchHHHHHHHHhcCCCch
Q 047120 527 CRNYENLNVGEPVAKHLIGMDSS--NSSSYVLLSNMFAGLGMWN 568 (634)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 568 (634)
-.+.|..+.|..+|.-.-+.-++ ++..|...-..-.+-|+-+
T Consensus 668 EtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 668 ETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred hhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 46789999999999888877643 4557777777777888743
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=4.5e-11 Score=112.07 Aligned_cols=327 Identities=11% Similarity=0.059 Sum_probs=239.0
Q ss_pred CCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHH-HHHHHHHHcC
Q 047120 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACN-AMMGGYVRNG 326 (634)
Q Consensus 248 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~l~~~~~~~g 326 (634)
.|...+-.....+-+.|....|+..|......-+..|.+.+....-..+.+.+..+...+...+...-. -+..++....
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 444444444445567788888888887776655566666665555555556555555444443332222 2334555556
Q ss_pred CchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC-C-CchhHHHHHHHHhHhcCCHHHHHH
Q 047120 327 YSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF-S-LNGKHGVALIDMYSKCGSIENAIK 404 (634)
Q Consensus 327 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~ 404 (634)
+.++++.-....... |+.-+...-+....+.....|+++|+.+|+++.+... . .|..+|+.++..-..+.++.---.
T Consensus 242 q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 242 QHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence 777787777777755 5544444444444455677899999999999988731 1 255677766644433333332222
Q ss_pred HHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCccc
Q 047120 405 VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483 (634)
Q Consensus 405 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 483 (634)
..-.+.+--+.+.-.+.+-|.-.++.++|..+|++..+. .|. ...|+.+.+-|....+...|+..++.+.+. .+.
T Consensus 321 ~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p~ 396 (559)
T KOG1155|consen 321 NVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NPR 396 (559)
T ss_pred HHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--Cch
Confidence 222333445566777778888899999999999999975 566 458888889999999999999999999873 255
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 047120 484 ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF 561 (634)
Q Consensus 484 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (634)
|-..|-.|+.+|.-.+.+.-|+-+|+++ ..+| |...|.+|...|.+.++.++|++.|.+++..+..+...+..|+++|
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLy 476 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLY 476 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 7788999999999999999999999998 4555 5789999999999999999999999999999988999999999999
Q ss_pred hcCCCchHHHHHHHHHHh
Q 047120 562 AGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 562 ~~~g~~~~A~~~~~~~~~ 579 (634)
.+.++.++|.+++++-.+
T Consensus 477 e~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 999999999999988865
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=5.2e-11 Score=112.36 Aligned_cols=220 Identities=13% Similarity=0.033 Sum_probs=173.9
Q ss_pred HHHHcCCchHHHHHHHHHHhcCCCCCCHhH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCH
Q 047120 321 GYVRNGYSMKALEIFDNMQCELYLHPDDAS-LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSI 399 (634)
Q Consensus 321 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 399 (634)
-+.-.|+.-.|...|+..+.. .|.... |.-+...+....+.++....|..+.+.. +-++.+|..-..++.-.+++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l---~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKL---DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhc---CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHH
Confidence 345578999999999999844 454433 7778888999999999999999998875 55777888888889999999
Q ss_pred HHHHHHHHhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 047120 400 ENAIKVFEQIEDG---SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELM 475 (634)
Q Consensus 400 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 475 (634)
++|..-|++...- +...|-.+..+.-+.+++++++..|++.+++ -|+ +..|+.....+...+++++|.+.|+.+
T Consensus 411 e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 411 EEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 9999999998754 4446666666777889999999999999986 455 679999999999999999999999999
Q ss_pred HHhcCc------ccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047120 476 RRIHKL------EPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547 (634)
Q Consensus 476 ~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 547 (634)
.+.... .+.+.+.-.++-.- =.+++..|.++++++ .+.|- ...|.+|...-.+.|+.++|+++|++...+.
T Consensus 489 i~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 489 IELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 874211 11111222222222 348999999999998 66665 5689999999999999999999999987654
No 41
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4.4e-11 Score=115.04 Aligned_cols=264 Identities=12% Similarity=0.019 Sum_probs=190.5
Q ss_pred ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047120 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI 390 (634)
Q Consensus 311 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 390 (634)
++.....-..-+...+++.+..++++...+..+ +....+..-|.++...|+.-+-..+=..+.+. .|..+.+|-++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp--fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDP--FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC--CCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 444445555667777888888888888876533 33334444455667777777666666666654 355667788888
Q ss_pred HHhHhcCCHHHHHHHHHhccCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 047120 391 DMYSKCGSIENAIKVFEQIEDGS---VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKE 467 (634)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 467 (634)
-.|.-.|+.++|++.|.+...-| ...|-....+|+-.|..+.|+..+...-+. +.-....+..+..-|.+.++.+-
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 77877888888888888876433 347888888888888888888888877653 12222344455556778888888
Q ss_pred HHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCC-----CCC----CHHHHHHHHHHHHhcCChhHHHH
Q 047120 468 GLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP-----MEP----NDVIWRTLLSACRNYENLNVGEP 538 (634)
Q Consensus 468 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p----~~~~~~~l~~~~~~~g~~~~a~~ 538 (634)
|.++|..+... .+.|+...+-+.-.....+.+.+|...|+..- +.+ =..+++.|+.+|++.+.+++|+.
T Consensus 399 Ae~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 88888887652 23345667777777778888888888887651 111 23467888888888889999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 539 VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 539 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
.+++++.+.|.++.++..++-+|...|+++.|++.|.+....
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 999999888999899999999999999999888888777543
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=6.2e-13 Score=130.26 Aligned_cols=280 Identities=14% Similarity=0.048 Sum_probs=220.0
Q ss_pred CChHHHHHHhhhCCC--C-ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCC-CHhHHHHHHHHHHccCChHHHHHH
Q 047120 295 GRVDIARRLFDEMPK--R-DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP-DDASLVIVLSAIAQLGHIDKGVAI 370 (634)
Q Consensus 295 g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 370 (634)
-+..+|...|..+++ + ...+...+..+|...+++++|.++|+.+.+...... +...|.+.+-.+.+ +-+..+
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 356789999988664 2 335566788999999999999999999985422222 44577777665433 223333
Q ss_pred HHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 047120 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV---DHWNAMINGLAIHGLGELAFDLLMEMERLSIEP 447 (634)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 447 (634)
+.+-.-.--+..+.+|.++.++|.-+++.+.|++.|++..+-|+ .+|+.+..-+....++|.|+..|+..+. +.|
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 33222222366789999999999999999999999999885544 5788888888889999999999999874 455
Q ss_pred CHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 047120 448 DDI-TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTL 523 (634)
Q Consensus 448 ~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 523 (634)
... .|..+...|.+.++++.|+-.|+++.. +.|. ......+...+-+.|+.|+|+.+++++ .++| |+..-...
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 544 777888899999999999999999976 3454 556677888899999999999999998 3333 45555556
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCc
Q 047120 524 LSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583 (634)
Q Consensus 524 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (634)
+..+...+++++|...++++.+.-|++...+..++.+|.+.|+.+.|+.-|.-|.+.+.+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 667888899999999999999999999999999999999999999999988877666543
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=7.4e-12 Score=125.14 Aligned_cols=245 Identities=8% Similarity=0.009 Sum_probs=124.3
Q ss_pred HHcCCchHHHHHHHHHHhcCCCCCCHhHHH--HHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHH
Q 047120 323 VRNGYSMKALEIFDNMQCELYLHPDDASLV--IVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE 400 (634)
Q Consensus 323 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 400 (634)
.+.|+++.|.+.+.++.+ ..|+..... .....+...|+++.|...++.+.+.. +-++.....+...|.+.|+++
T Consensus 129 ~~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 129 QQRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHH
Confidence 445555555555555542 234432222 12334445555555555555555443 334455555555555555555
Q ss_pred HHHHHHHhccCC---Chh--------HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 047120 401 NAIKVFEQIEDG---SVD--------HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469 (634)
Q Consensus 401 ~A~~~~~~~~~~---~~~--------~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 469 (634)
+|.+++..+.+. +.. .|..++.......+.+...++++.+-+. .+.++.....+..++...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 555555554421 111 1222222222333344444444444322 1234455566666666666666666
Q ss_pred HHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047120 470 LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547 (634)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 547 (634)
++++...+. .|+... .++.+....++.+++++.+++. +..|+ +..+.++...|.+.|++++|.+.|+++++..
T Consensus 284 ~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 284 QIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred HHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 666665541 333322 1223333446666666666655 32333 3445566666666666666666666666666
Q ss_pred CCCCchHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120 548 SSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578 (634)
Q Consensus 548 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 578 (634)
|++ ..+..++.++.+.|+.++|.+++++..
T Consensus 359 P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 359 PDA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 554 334566666666666666666666553
No 44
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.55 E-value=6.4e-11 Score=119.46 Aligned_cols=503 Identities=12% Similarity=0.057 Sum_probs=291.6
Q ss_pred HHHHHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHH
Q 047120 31 NQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLM 110 (634)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 110 (634)
..++..+...|+.|+.++|.++|..||..|+. +.|- +|.-|+......+...++.++.++.+.++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdi---eaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------ 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDI---EAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------ 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCC---cccc-chhhhhcccccccchhHHHHHhcccccccccCCC------
Confidence 46788899999999999999999999999998 6666 8888887776778889999999999999988876
Q ss_pred HHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CC-ChhHH
Q 047120 111 LDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG-IR-DSVSY 188 (634)
Q Consensus 111 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-~~~~~ 188 (634)
.|..+||..++.+|.+.||+.. .+..++- .-.++..+...|.-.....++-.+. .| -...-
T Consensus 80 -----ep~aDtyt~Ll~ayr~hGDli~-fe~veqd-----------Le~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda 142 (1088)
T KOG4318|consen 80 -----EPLADTYTNLLKAYRIHGDLIL-FEVVEQD-----------LESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA 142 (1088)
T ss_pred -----CCchhHHHHHHHHHHhccchHH-HHHHHHH-----------HHHHHhhhhhhccCcHHHHHHhhcccCcccchhH
Confidence 6899999999999999999876 2222221 1123333444454444444444432 11 11122
Q ss_pred HHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC-CCchHHHHHHHHHHhcCChH
Q 047120 189 NSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE-RDLISWNSMLHGCVKCGKMD 267 (634)
Q Consensus 189 ~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 267 (634)
...+....-.|-++.+++++..+.....+. +...+++.+......+++...+.+...+ +++.+|..+++.-..+|+.+
T Consensus 143 ~n~illlv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 143 ENAILLLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchh
Confidence 234444555677778888887776542222 1111355555555556666666666666 77777777777777777777
Q ss_pred HHHHHHhhCCCC----ChhHHHHHHHHHHHcCChHHHHHHhhhCC----CCChhhHHHHHHHHHHcCCchHHHHHHHHHH
Q 047120 268 DAQALFDKMPKR----DVVSWANMIDGYAKLGRVDIARRLFDEMP----KRDVVACNAMMGGYVRNGYSMKALEIFDNMQ 339 (634)
Q Consensus 268 ~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 339 (634)
.|..++.+|.+. +.+-|-.|+-+ .++...+..++.-|. .|+..|+...+..+..+|....+.
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~------- 291 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE------- 291 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc-------
Confidence 777777777652 22333333332 444444444444443 255555555554444433311110
Q ss_pred hcCCCCCCHhHHHHHHHHHHccC-----ChHH-----HHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhc
Q 047120 340 CELYLHPDDASLVIVLSAIAQLG-----HIDK-----GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409 (634)
Q Consensus 340 ~~~~~~p~~~~~~~ll~~~~~~~-----~~~~-----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 409 (634)
...+....+++-+.+-.-.| +.+. ....++...=.|+.....+|...+... ..|+-++..++...+
T Consensus 292 ---e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l 367 (1088)
T KOG4318|consen 292 ---EGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQL 367 (1088)
T ss_pred ---cccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhh
Confidence 11122222222222222222 1110 001111111123333334443333322 245555555555444
Q ss_pred cCC-------ChhHHHHHHHHHHHcC----------------------ChHHHHHHHHHHHHCCCCCCH-----------
Q 047120 410 EDG-------SVDHWNAMINGLAIHG----------------------LGELAFDLLMEMERLSIEPDD----------- 449 (634)
Q Consensus 410 ~~~-------~~~~~~~li~~~~~~~----------------------~~~~A~~~~~~m~~~g~~p~~----------- 449 (634)
..| ++..|..++.-|.+.- ...+..+++... .||.
T Consensus 368 ~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~ 442 (1088)
T KOG4318|consen 368 LNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSST 442 (1088)
T ss_pred cCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHH
Confidence 322 2333433333332211 111222222211 2221
Q ss_pred -----------------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCC
Q 047120 450 -----------------ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP 512 (634)
Q Consensus 450 -----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 512 (634)
..-+.++..|+..-+..+++..-+.... .-+ ...|..||+.+......+.|..+.++..
T Consensus 443 Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~-~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d 518 (1088)
T KOG4318|consen 443 ELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYED-LLF---AGLYALLIKLMDLHDKLEYALSFVDEID 518 (1088)
T ss_pred HHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh---hhHHHHHhhhHHHHHHHHHHHhchhhhc
Confidence 1223344445555555555544444333 111 2678999999999999999999999883
Q ss_pred -----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---CchHHHHHHHHhcCCCchHHHHHHHHHHhCCCcc
Q 047120 513 -----MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN---SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKK 584 (634)
Q Consensus 513 -----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 584 (634)
+..|...+..+...+.+.+....+..+++++.+.-... ......+.+.....|+.+...++.+-+...|+.-
T Consensus 519 ~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 519 TRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred ccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 33455677888888899999999999999888743333 3355566666778899999999999998888853
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=3.1e-11 Score=120.70 Aligned_cols=276 Identities=11% Similarity=0.040 Sum_probs=204.8
Q ss_pred cCChHHHHHHHhhCCCC--ChhH-HHHHHHHHHHcCChHHHHHHhhhCCC--CChhhHH--HHHHHHHHcCCchHHHHHH
Q 047120 263 CGKMDDAQALFDKMPKR--DVVS-WANMIDGYAKLGRVDIARRLFDEMPK--RDVVACN--AMMGGYVRNGYSMKALEIF 335 (634)
Q Consensus 263 ~g~~~~A~~~~~~~~~~--~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~l~~~~~~~g~~~~A~~~~ 335 (634)
.|+++.|.+.+....+. ++.. +........+.|+.+.|...+.++.+ |+..... .....+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 58888888777765442 2222 33334444778888888888888765 3332222 2356777888888888888
Q ss_pred HHHHhcCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchh-------HHHHHHHHhHhcCCHHHHHHHHH
Q 047120 336 DNMQCELYLHPD-DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGK-------HGVALIDMYSKCGSIENAIKVFE 407 (634)
Q Consensus 336 ~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~ 407 (634)
+++.+. .|+ ......+...+.+.|+++.+..++..+.+.+..++.. .|..++.......+.+...++++
T Consensus 177 ~~~~~~---~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 177 DKLLEV---APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888744 453 4567777788888888888888888888876543221 22333444445556677778887
Q ss_pred hcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC
Q 047120 408 QIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484 (634)
Q Consensus 408 ~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 484 (634)
.+. +.++.....+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+. .+-|
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~ 327 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDT 327 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCC
Confidence 775 357788899999999999999999999999874 5555322 233444669999999999998874 2445
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047120 485 LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547 (634)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 547 (634)
...+..+...+.+.|++++|.+.|+.+ ...|+...+..+...+.+.|+.++|.+++++.+.+-
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 667889999999999999999999998 778999999999999999999999999999998754
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.51 E-value=5e-11 Score=119.95 Aligned_cols=278 Identities=10% Similarity=-0.006 Sum_probs=144.5
Q ss_pred hcCChHHHHHHHhhCCC--CCh-hHHHHHHHHHHHcCChHHHHHHhhhCCC--CCh--hhHHHHHHHHHHcCCchHHHHH
Q 047120 262 KCGKMDDAQALFDKMPK--RDV-VSWANMIDGYAKLGRVDIARRLFDEMPK--RDV--VACNAMMGGYVRNGYSMKALEI 334 (634)
Q Consensus 262 ~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~g~~~~A~~~ 334 (634)
..|+++.|.+.+.+..+ |+. ..+-.....+.+.|+.+.|.+.+.+..+ |+. .........+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 45777777777666544 222 2233344556666777777777766532 222 2233345666667777777777
Q ss_pred HHHHHhcCCCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHh---H----hcCCHHHHHHHH
Q 047120 335 FDNMQCELYLHP-DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMY---S----KCGSIENAIKVF 406 (634)
Q Consensus 335 ~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~~~~~~A~~~~ 406 (634)
++.+.+. .| +......+...+...|+++.+.+.+..+.+.+..+.......-..++ . .....+...+.+
T Consensus 176 l~~l~~~---~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 176 VDKLLEM---APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7777744 34 33456666667777777777777777777765433222211111111 1 111223333344
Q ss_pred HhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 047120 407 EQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDIT---FTGLLNACAHAGLVKEGLLCFELMRRIHK 480 (634)
Q Consensus 407 ~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 480 (634)
+...+ .++..+..++..+...|+.++|.+.+++..+. .||... ...........++.+.+.+.++...+...
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 44332 35556666666666666666666666666654 333321 01111112233555555555555544221
Q ss_pred cccChhHHHHHHHHHhccCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047120 481 LEPELQHYGCMVDILGRAGHIEAARNLIED--M-PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544 (634)
Q Consensus 481 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 544 (634)
-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.+
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111113344555555555666666655552 2 344555555555555555555555555555543
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=2.4e-10 Score=107.44 Aligned_cols=419 Identities=13% Similarity=0.132 Sum_probs=238.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCCh-hHHHHHHHHH
Q 047120 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGI---RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNL-ISWNSVLNGY 228 (634)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~-~~~~~ll~~~ 228 (634)
+...|-.....-...+++..|..+|+.... .+...|--.+..-.++.....|..++++....-|-+ ..|...+-+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 444555555555566788888899988764 466678888888888888899999988887664443 2334444444
Q ss_pred HhcCCcHHHHHHHHhhCCC--CCchHHHHHHHHHHhcCChHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHHHh
Q 047120 229 AQLKSGLQFAWQIFEKMPE--RDLISWNSMLHGCVKCGKMDDAQALFDKMP--KRDVVSWANMIDGYAKLGRVDIARRLF 304 (634)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 304 (634)
-..|+ +..|.++|++-.+ |+...|.+.|+.-.+-..++.|..+|++.. .|++.+|-.....-.++|+...|..+|
T Consensus 152 E~LgN-i~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 152 EMLGN-IAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HHhcc-cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 44566 7778888777665 777777777777777777777777777754 477777777777777777777777777
Q ss_pred hhCCC--C----ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCH---hHHHHHHHHHHccCChHHHHHHH---H
Q 047120 305 DEMPK--R----DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD---ASLVIVLSAIAQLGHIDKGVAIH---R 372 (634)
Q Consensus 305 ~~~~~--~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~---~ 372 (634)
+...+ . +...+.++..-=.+...++.|.-+|+-.... -|.. ..|.....---+-|+........ +
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~---~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH---IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 66553 1 1223333333333455666676777666643 2322 23333333333444444333322 1
Q ss_pred HHH-H---cCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCC--h---hHHHHHHH--------HHHHcCChHHHHH
Q 047120 373 YLE-K---DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS--V---DHWNAMIN--------GLAIHGLGELAFD 435 (634)
Q Consensus 373 ~~~-~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~---~~~~~li~--------~~~~~~~~~~A~~ 435 (634)
.+. + ...+.|-.++--.+......|+.+...++|++....- . ..|...|. .-....+.+.+.+
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 221 0 1123344444455555555566666666666554210 0 11221111 1123455666666
Q ss_pred HHHHHHHCCCCCC-HHHHHHH----HHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHh
Q 047120 436 LLMEMERLSIEPD-DITFTGL----LNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIED 510 (634)
Q Consensus 436 ~~~~m~~~g~~p~-~~~~~~l----l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 510 (634)
+++..++ +-|- ..||.-+ ..-..+..++..|.+++..+. |.-|...+|...|..=.+.++++...+++++
T Consensus 388 vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 388 VYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6666655 2332 3333322 222334556666666666554 3355555666666666666666666666665
Q ss_pred C-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc--hHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 511 M-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS--SYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 511 ~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
. ...| +-.+|......-...|+.+.|..+|+-++.+...+.. .|-.+++.-...|.++.|..+++++.+.
T Consensus 463 fle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 463 FLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 4 2223 3445555555555666666666666666655422211 4445555555666666666666666554
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=4.1e-12 Score=124.61 Aligned_cols=247 Identities=13% Similarity=0.097 Sum_probs=198.0
Q ss_pred CCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCchhHHHHHHHHhHhcCCHHHHH
Q 047120 326 GYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF--SLNGKHGVALIDMYSKCGSIENAI 403 (634)
Q Consensus 326 g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 403 (634)
-+..+|+..|...... +.-..+....+..+|-..++++++..+|+.+.+..- --+..+|.+.+--+-+.=.+.---
T Consensus 333 y~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 3568999999995533 333446777889999999999999999999987531 235677777765543322222111
Q ss_pred HHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcc
Q 047120 404 KVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP-DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLE 482 (634)
Q Consensus 404 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 482 (634)
+-+-...+..+.+|-++..+|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+.+..
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----- 483 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----- 483 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----
Confidence 222223355788999999999999999999999999987 477 467999999999999999999999998875
Q ss_pred cChhH---HHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHH
Q 047120 483 PELQH---YGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557 (634)
Q Consensus 483 ~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 557 (634)
.|... |-.|+-.|.++++++.|+-.|+++ .+.|. .+....+...+.+.|+.++|++++++++.++|.+|-.-+.-
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 34444 445677899999999999999998 67776 55667777789999999999999999999999999999999
Q ss_pred HHHHhcCCCchHHHHHHHHHHhCC
Q 047120 558 SNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 558 ~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
+.++...+++++|.+.++++++.-
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhC
Confidence 999999999999999999997763
No 49
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.48 E-value=5.1e-10 Score=111.76 Aligned_cols=424 Identities=12% Similarity=0.039 Sum_probs=264.4
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCChHHHHHHHhhCccCC--CChhHHHH
Q 047120 149 AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI---RDSVSYNSMIDGYVKSGNIESARELFDSMPIRE--RNLISWNS 223 (634)
Q Consensus 149 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--p~~~~~~~ 223 (634)
.+.-|+.+|..|.-++..+|+++.+.+.|++... .....|+.+...+...|.-..|..+++...... |+..+.-.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3567888999999999999999999999998764 355689999999999999999999998877664 54444333
Q ss_pred H-HHHHHhcCCcHHHHHHHHhhCCC--------CCchHHHHHHHHHHh-----------cCChHHHHHHHhhCCC---CC
Q 047120 224 V-LNGYAQLKSGLQFAWQIFEKMPE--------RDLISWNSMLHGCVK-----------CGKMDDAQALFDKMPK---RD 280 (634)
Q Consensus 224 l-l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~-----------~g~~~~A~~~~~~~~~---~~ 280 (634)
+ -..|.+.-+..+++.++-.++.. .....|..+.-+|.. .....++++.+++..+ .|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3 33343322214444444433322 233444444444431 1223456666666643 23
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHhhhCC----CCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHH
Q 047120 281 VVSWANMIDGYAKLGRVDIARRLFDEMP----KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLS 356 (634)
Q Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~ 356 (634)
..+...+.--|+..++++.|.+..++.. ..+...|..+.-.+...+++.+|+.+.+....+.|. |......-+.
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIH 555 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhh
Confidence 3333334445666777777777766554 346677888888888888888888888877765322 1111222222
Q ss_pred HHHccCChHHHHHHHHHHHHcC-CCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc----C-C-ChhHHHHHHHHHHHcC-
Q 047120 357 AIAQLGHIDKGVAIHRYLEKDQ-FSLNGKHGVALIDMYSKCGSIENAIKVFEQIE----D-G-SVDHWNAMINGLAIHG- 428 (634)
Q Consensus 357 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~-~-~~~~~~~li~~~~~~~- 428 (634)
.-...++.+++......+...- -.+. ....++-....+....+. + . .+.++..+.......+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~----------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~ 625 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYG----------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLK 625 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhh----------HhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhh
Confidence 2233566666665554444310 0000 001111112222222222 0 1 1222322222221111
Q ss_pred --ChHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhcc
Q 047120 429 --LGELAFDLLMEMERLSIEPDD--------ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498 (634)
Q Consensus 429 --~~~~A~~~~~~m~~~g~~p~~--------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 498 (634)
.++.. +...-..|+. ..|......+.+.+..++|...+.++.+. .+..+..|......+...
T Consensus 626 ~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 626 SAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVK 697 (799)
T ss_pred hcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHH
Confidence 11111 1111122221 24455566778889999999888888762 244566788888899999
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHH--HHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHH
Q 047120 499 GHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEP--VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVR 574 (634)
Q Consensus 499 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 574 (634)
|.+++|.+.|... .+.|+ +.+..++...+...|+...|.. ++..+++.+|.++.+|+.++.++.+.|+.++|.+.|
T Consensus 698 ~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 9999999999887 66777 5588899999999999988888 999999999999999999999999999999999999
Q ss_pred HHHHhCCCccCCceeEEEE
Q 047120 575 SMMKERNLKKLPGCSWIEL 593 (634)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~ 593 (634)
....+... .+|-..|..+
T Consensus 778 ~aa~qLe~-S~PV~pFs~i 795 (799)
T KOG4162|consen 778 QAALQLEE-SNPVLPFSNI 795 (799)
T ss_pred HHHHhhcc-CCCccccccc
Confidence 98876643 2444455443
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.47 E-value=9.4e-11 Score=117.96 Aligned_cols=280 Identities=10% Similarity=-0.010 Sum_probs=204.9
Q ss_pred HHcCChHHHHHHhhhCCC--CChh-hHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHh--HHHHHHHHHHccCChHH
Q 047120 292 AKLGRVDIARRLFDEMPK--RDVV-ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA--SLVIVLSAIAQLGHIDK 366 (634)
Q Consensus 292 ~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~ 366 (634)
...|+++.|.+.+....+ ++.. .+-....+..+.|+++.|.+++.+..+. .|+.. ........+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCCHHH
Confidence 457999999999988765 3332 3344456788889999999999998754 46653 33334677788999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCC---ChhHHH----HHHHHHHHcCChHHHHHHHHH
Q 047120 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG---SVDHWN----AMINGLAIHGLGELAFDLLME 439 (634)
Q Consensus 367 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~~~~~~A~~~~~~ 439 (634)
|...++.+.+.. +-++.+...+...+...|++++|.+.+..+.+. +...+. .........+..+++.+.+..
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999876 557788899999999999999999999988743 333332 111222333344444556666
Q ss_pred HHHCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhH---HHHHHHHHhccCCHHHHHHHHHhC-C
Q 047120 440 MERLSI---EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH---YGCMVDILGRAGHIEAARNLIEDM-P 512 (634)
Q Consensus 440 m~~~g~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~ 512 (634)
+.+... +.+...+..+...+...|+.++|.+++++..+. .|+... .....-.....++.+.+.+.+++. .
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 655421 126778888999999999999999999999874 344331 112222234457888888888876 4
Q ss_pred CCCC-H--HHHHHHHHHHHhcCChhHHHHHHH--HHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 513 MEPN-D--VIWRTLLSACRNYENLNVGEPVAK--HLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 513 ~~p~-~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
..|+ + ....++...+.+.|++++|.+.++ .+.+..|++. .+..++.++.+.|+.++|.+++++...
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4454 3 566789999999999999999999 4666777554 477999999999999999999998644
No 51
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.47 E-value=1.1e-10 Score=117.92 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCC---CCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDS---SNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
..|..|+.-+......+.|..+.++....+. .+-..+..+.+++.+.+...++..+++++.+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks 556 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKS 556 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence 5678888888899999999988888766552 3455788899999999999999999998876
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4.2e-10 Score=105.69 Aligned_cols=284 Identities=11% Similarity=0.101 Sum_probs=184.8
Q ss_pred HHHHHcCChHHHHHHhhhCCC---CC-hhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCC-CHhHHHHHHHHHHccCC
Q 047120 289 DGYAKLGRVDIARRLFDEMPK---RD-VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP-DDASLVIVLSAIAQLGH 363 (634)
Q Consensus 289 ~~~~~~g~~~~A~~~~~~~~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~ 363 (634)
.+|....+.+++..-.+.... ++ ...-+....+.-...++++|+.+|+++.+...... |..+|+.++-.-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 344444455555544444432 22 22222233344556778888888888875422222 34566666544322111
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 047120 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG---SVDHWNAMINGLAIHGLGELAFDLLMEM 440 (634)
Q Consensus 364 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m 440 (634)
..++.+-.-.--+..+.++..+.+-|.-.++.++|...|++..+- ....|+.+..-|...++...|++-+++.
T Consensus 315 ----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 315 ----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred ----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 111111111112344567777888888888888888888877643 3447888888888888888888888888
Q ss_pred HHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCH
Q 047120 441 ERLSIEP-DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM--PMEPND 517 (634)
Q Consensus 441 ~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~ 517 (634)
++- .| |-..|-.+.++|.-.+...-|+-+|+++... -+.|...|.+|+++|.+.++.++|++.|... .-+.+.
T Consensus 391 vdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 391 VDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred Hhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 863 44 4558888888888888888888888888762 2445777888888888888888888888877 223456
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcc-------CCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 518 VIWRTLLSACRNYENLNVGEPVAKHLIGM-------DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
..+..|...+-+.++.++|...+++-++. +|....+...|+.-+.+.+++++|..+..+....
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 77888888888888888888888887763 2323334555777788888888888877655433
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=1.2e-10 Score=104.29 Aligned_cols=260 Identities=17% Similarity=0.143 Sum_probs=168.5
Q ss_pred hcCChHHHHHHHhhCCCCChhH---HHHHHHHHHHcCChHHHHHHhhhCCC-CCh------hhHHHHHHHHHHcCCchHH
Q 047120 262 KCGKMDDAQALFDKMPKRDVVS---WANMIDGYAKLGRVDIARRLFDEMPK-RDV------VACNAMMGGYVRNGYSMKA 331 (634)
Q Consensus 262 ~~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~l~~~~~~~g~~~~A 331 (634)
-..+.++|.++|-+|.+.|..| .-+|.+.|.+.|..|.|+++-..+.+ ||. .+...|..-|...|-+|.|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3577888888888888755544 45788888999999999999888765 443 2344567778888999999
Q ss_pred HHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc----hhHHHHHHHHhHhcCCHHHHHHHHH
Q 047120 332 LEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN----GKHGVALIDMYSKCGSIENAIKVFE 407 (634)
Q Consensus 332 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~ 407 (634)
.++|..+..++.. -......++..|....+|++|+..-+++.+.+-.+. ...|.-+...+....+++.|...+.
T Consensus 127 E~~f~~L~de~ef--a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 127 EDIFNQLVDEGEF--AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHhcchhh--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999988865222 234667778888888888888888888877654432 2455556666666677777777777
Q ss_pred hccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC
Q 047120 408 QIEDG---SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484 (634)
Q Consensus 408 ~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 484 (634)
+..+. .+..--.+...+...|+++.|.+.++...+.+..--+.+...|..+|.+.|+.++....+..+... .+.
T Consensus 205 kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g 281 (389)
T COG2956 205 KALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTG 281 (389)
T ss_pred HHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCC
Confidence 66533 233344455666677777777777777776533222446666667777777777777776666552 233
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHH-HhCCCCCCHHHHHHHHHH
Q 047120 485 LQHYGCMVDILGRAGHIEAARNLI-EDMPMEPNDVIWRTLLSA 526 (634)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~ 526 (634)
...-..+.+......-.+.|...+ +.+..+|+...+..++..
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 333334444433333344444433 334556666666666654
No 54
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.46 E-value=1.6e-13 Score=131.04 Aligned_cols=226 Identities=14% Similarity=0.141 Sum_probs=105.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcC-CCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHcC
Q 047120 353 IVLSAIAQLGHIDKGVAIHRYLEKDQ-FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG---SVDHWNAMINGLAIHG 428 (634)
Q Consensus 353 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~ 428 (634)
.+...+.+.|++++|.++++...... .+.++..+..+.......++++.|.+.++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44677789999999999997655444 3556677778888888999999999999998743 34467777777 7899
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHH
Q 047120 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLI 508 (634)
Q Consensus 429 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 508 (634)
++++|.+++.+..+. .+++..+..++..+...++++++..+++.+......+++...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887665 456677788888999999999999999998764445667888999999999999999999999
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120 509 EDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 509 ~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
+++ ...|+ ......++..+...|+.+++.++++...+..|.+|..+..++.+|...|+.++|..++++..+..
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 998 55665 67888999999999999999999999998889999999999999999999999999999987743
No 55
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.44 E-value=1.7e-08 Score=98.82 Aligned_cols=486 Identities=13% Similarity=0.089 Sum_probs=237.9
Q ss_pred ccHHHHHHHHHcCCCcchHHHHHHHHHHC-CCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 047120 85 FLWNAIIKTYSHGLDPKEALVMFCLMLDN-GVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISL 163 (634)
Q Consensus 85 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 163 (634)
..|-.-+..+..+|+...-...|++.+.. .+......|...+......+-++.+..++++.++. ++..-.--|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 34555555555556665555555554432 22223334555555555555566666666665543 22234445555
Q ss_pred HHhcCCHHHHHHHHhhCCCC----------ChhHHHHHHHHHHhCCCh---HHHHHHHhhCccCCCCh--hHHHHHHHHH
Q 047120 164 YVRCGYLEFARQLFDKMGIR----------DSVSYNSMIDGYVKSGNI---ESARELFDSMPIRERNL--ISWNSVLNGY 228 (634)
Q Consensus 164 ~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~p~~--~~~~~ll~~~ 228 (634)
+++.+++++|.+.+..+... +-..|.-+-+..+++-+. -...++++.+...-+|. ..|++|.+-|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 56666666666666555321 222344444444333222 22334455555444443 3455666666
Q ss_pred HhcCCcHHHHHHHHhhCCC--CCchHHHHHHHHHHhcCCh----------------------HHHHHHHhhCCC------
Q 047120 229 AQLKSGLQFAWQIFEKMPE--RDLISWNSMLHGCVKCGKM----------------------DDAQALFDKMPK------ 278 (634)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~----------------------~~A~~~~~~~~~------ 278 (634)
.+.|. ++.|.+++++... ..+..|..+.++|++-... +-.+.-|+.+..
T Consensus 259 Ir~g~-~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 259 IRSGL-FEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HHhhh-hHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 66666 6666666665544 2333344444444321111 011111111110
Q ss_pred ---------CChhHHHHHHHHHHHcCChHHHHHHhhhCCC---------CChhhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 047120 279 ---------RDVVSWANMIDGYAKLGRVDIARRLFDEMPK---------RDVVACNAMMGGYVRNGYSMKALEIFDNMQC 340 (634)
Q Consensus 279 ---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 340 (634)
.++..|..-+.. ..|+..+-...+.+..+ .-...|..+.+.|-..|+.+.|..+|++...
T Consensus 338 NsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 011111111111 11223333333322221 1123455555555556666666666655542
Q ss_pred cCCCCC-C--HhHHHHHHHHHHccCChHHHHHHHHHHHHc-----------CCCC------chhHHHHHHHHhHhcCCHH
Q 047120 341 ELYLHP-D--DASLVIVLSAIAQLGHIDKGVAIHRYLEKD-----------QFSL------NGKHGVALIDMYSKCGSIE 400 (634)
Q Consensus 341 ~~~~~p-~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------~~~~------~~~~~~~l~~~~~~~~~~~ 400 (634)
- ..+- + ..+|..-...-.+..+++.|..+++.+... +.++ +..+|...++..-..|-++
T Consensus 416 V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 416 V-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred C-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 2 1100 0 112222223333444555555554443321 0011 1223333344444445555
Q ss_pred HHHHHHHhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhc---cCCHHHHHHHHH
Q 047120 401 NAIKVFEQIEDG---SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAH---AGLVKEGLLCFE 473 (634)
Q Consensus 401 ~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~---~g~~~~a~~~~~ 473 (634)
....+|+++.+- ++.+--.....+-.+.-++++.+++++-+..--.|+.. .|+..+.-+.+ ...++.|..+|+
T Consensus 495 stk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 555555554422 22221112222233444566666666544432234433 55555544432 347889999999
Q ss_pred HhHHhcCcccChhH--HHHHHHHHhccCCHHHHHHHHHhC--CCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047120 474 LMRRIHKLEPELQH--YGCMVDILGRAGHIEAARNLIEDM--PMEPND--VIWRTLLSACRNYENLNVGEPVAKHLIGMD 547 (634)
Q Consensus 474 ~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 547 (634)
.+.+ +.+|...- |-.....=.+.|-...|+++++++ ++++.. ..|+..|.--...=.+.....+|+++++.-
T Consensus 575 qaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L 652 (835)
T KOG2047|consen 575 QALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL 652 (835)
T ss_pred HHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC
Confidence 9887 66665322 222223334568888899999988 444443 377877766555455666788999999987
Q ss_pred CCCCc--hHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 548 SSNSS--SYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 548 p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
|++-. .....+++-.+.|..+.|..++.--.+.
T Consensus 653 p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 76533 4556678888999999999988655443
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=1.2e-09 Score=101.08 Aligned_cols=275 Identities=15% Similarity=0.104 Sum_probs=197.9
Q ss_pred cCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHhhhCCCC----ChhhHHHHHHHHHHcCCchHHHHHH
Q 047120 263 CGKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVDIARRLFDEMPKR----DVVACNAMMGGYVRNGYSMKALEIF 335 (634)
Q Consensus 263 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~ 335 (634)
.|++.+|++++.+-.+ .....|..-..+--..|+.+.+-+.+.+..++ +....-.........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5778888777776554 22334445556666778888888888777653 3344555666777788888888888
Q ss_pred HHHHhcCCCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCch-------hHHHHHHHHhHhcCCHHHHHHHHH
Q 047120 336 DNMQCELYLHP-DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG-------KHGVALIDMYSKCGSIENAIKVFE 407 (634)
Q Consensus 336 ~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~ 407 (634)
.++... .| +.........+|.+.|++.....++..+.+.+.-.+. .++..+++-....+..+.-...++
T Consensus 177 ~~ll~~---~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 177 DQLLEM---TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHh---CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 877743 44 3456677777888888888888888888887765543 344445554444455555556677
Q ss_pred hcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC
Q 047120 408 QIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484 (634)
Q Consensus 408 ~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 484 (634)
..+ +.++..-.+++.-+.+.|+.++|.++..+..+++..|+ ....-.+.+.++.+.-++..+...+.++..|
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p- 328 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP- 328 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh-
Confidence 665 34677777888888899999999999888888877666 2223345677777777777777766544444
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047120 485 LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546 (634)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 546 (634)
..+.+|...|.+.+.|.+|...|+.. +..|+..+|..+..++.+.|+.++|.+..++++..
T Consensus 329 -~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 -LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred -hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 67788888899999999999998876 77888899999999999999999999888888744
No 57
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=8.9e-10 Score=99.87 Aligned_cols=217 Identities=12% Similarity=0.070 Sum_probs=108.6
Q ss_pred hHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHH-----HccCChHHHHHHH
Q 047120 297 VDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI-----AQLGHIDKGVAIH 371 (634)
Q Consensus 297 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~-----~~~~~~~~a~~~~ 371 (634)
-+.|++++-.+.+.-+.+.-.|+--|.+.++..+|..+.+++. ...|-......+..+. ......+-|.+.|
T Consensus 270 gEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe~gSreHlKiAqqff 346 (557)
T KOG3785|consen 270 GEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQETGSREHLKIAQQFF 346 (557)
T ss_pred CccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Confidence 3445555544444333344445555666677777776666554 3344333332222221 1112233344444
Q ss_pred HHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 047120 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDIT 451 (634)
Q Consensus 372 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 451 (634)
+..-+.+...| +...-.++.+.+.-..++++++-++..+..-- .-|..-
T Consensus 347 qlVG~Sa~ecD------------------------------TIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~F 395 (557)
T KOG3785|consen 347 QLVGESALECD------------------------------TIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDF 395 (557)
T ss_pred HHhcccccccc------------------------------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchh
Confidence 43333332222 12223344444444555666666666555432 222222
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhc
Q 047120 452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL-SACRNY 530 (634)
Q Consensus 452 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-~~~~~~ 530 (634)
-..+..+.+..|++.+|.++|-.+.. ..++.+..-...|.++|.++|.++-|.+++-++..+.+..+...+| .-|.+.
T Consensus 396 n~N~AQAk~atgny~eaEelf~~is~-~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 396 NLNLAQAKLATGNYVEAEELFIRISG-PEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKA 474 (557)
T ss_pred hhHHHHHHHHhcChHHHHHHHhhhcC-hhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 23455666667777777777666543 2222222223455667777777777777776664333444443333 346677
Q ss_pred CChhHHHHHHHHHhccCC
Q 047120 531 ENLNVGEPVAKHLIGMDS 548 (634)
Q Consensus 531 g~~~~a~~~~~~~~~~~p 548 (634)
+.+--|-+.|..+-.++|
T Consensus 475 ~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHHHHHhhhHHHccCC
Confidence 777777777766655554
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=2.6e-10 Score=102.18 Aligned_cols=289 Identities=14% Similarity=0.085 Sum_probs=215.0
Q ss_pred cCChHHHHHHhhhCCCCChhh---HHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCH--hHHHHHHHHHHccCChHHHH
Q 047120 294 LGRVDIARRLFDEMPKRDVVA---CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD--ASLVIVLSAIAQLGHIDKGV 368 (634)
Q Consensus 294 ~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~ 368 (634)
..+.++|.+.|-+|.+.|+.+ .-+|.+.|.+.|..+.|+.+.+.+....+..-+. ...-.+..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 478899999999998766554 4568889999999999999999998663333322 23445667788899999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChh--------HHHHHHHHHHHcCChHHHHHHHHHH
Q 047120 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD--------HWNAMINGLAIHGLGELAFDLLMEM 440 (634)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~li~~~~~~~~~~~A~~~~~~m 440 (634)
.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+.. .|--+...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9999998755 344567778999999999999999998877644333 3555666667788999999999999
Q ss_pred HHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHH
Q 047120 441 ERLSIEPDDI-TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDV 518 (634)
Q Consensus 441 ~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 518 (634)
.+. .|+.+ .-..+.......|+++.|.+.++.+.+. +..--..+...|..+|.+.|+.++....+.++ ...+...
T Consensus 207 lqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 207 LQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred Hhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 876 45543 5556677888999999999999999873 32223566788999999999999999999887 4455555
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh--cCCCchHHHHHHHHHHhCCCccCC
Q 047120 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA--GLGMWNDARRVRSMMKERNLKKLP 586 (634)
Q Consensus 519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~ 586 (634)
.-..+...-....-.+.|...+-+-+...|.--..|..+-.-+. ..|.+.+...+++.|....++..|
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~ 353 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKP 353 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcC
Confidence 55555555555566677777777777777755444443333333 346688888899999877666555
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=1.1e-10 Score=108.83 Aligned_cols=197 Identities=14% Similarity=0.039 Sum_probs=156.7
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047120 383 GKHGVALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459 (634)
Q Consensus 383 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 459 (634)
...+..+...+...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+.. ..+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45566677777788888888888876652 345677778888888999999999999888753 23456777788888
Q ss_pred hccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHH
Q 047120 460 AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGE 537 (634)
Q Consensus 460 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~ 537 (634)
...|++++|.+.++.+............+..+...+...|++++|.+.+++. ...|+ ...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999998763222233456777888899999999999999887 33444 567888888899999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 538 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
..++++++..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999988888888888999999999999999998887543
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3.5e-08 Score=95.56 Aligned_cols=279 Identities=11% Similarity=-0.001 Sum_probs=218.3
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHhhhCCCCC---hhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHH
Q 047120 279 RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRD---VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVL 355 (634)
Q Consensus 279 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll 355 (634)
.+........+-+...+++.+..++++.+.+.| ...+..-|.++...|+..+-..+=.++.+. .+-...+|-.+.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHH
Confidence 455566667777888999999999999988743 445666677888999998888888888854 233457899998
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHH
Q 047120 356 SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGEL 432 (634)
Q Consensus 356 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 432 (634)
--|...|+..+|.++|.+..... +.-...|-...+.|+-.|+-+.|+..+..+.+ .....+--+..-|.+.++...
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 88889999999999999887643 22345788889999999999999988876542 222233334556888999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-Ccc----cChhHHHHHHHHHhccCCHHHHHH
Q 047120 433 AFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIH-KLE----PELQHYGCMVDILGRAGHIEAARN 506 (634)
Q Consensus 433 A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~----~~~~~~~~l~~~~~~~g~~~~A~~ 506 (634)
|.++|.+... +.|+ +..++-+.-.....+.+.+|..+|+.....- .+. .-..+++.|+.+|.+.+.+++|+.
T Consensus 399 Ae~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999885 5665 5577777777778899999999999877311 011 134568999999999999999999
Q ss_pred HHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120 507 LIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA 562 (634)
Q Consensus 507 ~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (634)
.+++. -.+.|..++.++.-.|...|+++.|...|.+++.+.|++..+-..|..+..
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 99987 345678889999999999999999999999999999999777666665543
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=5.4e-08 Score=94.73 Aligned_cols=457 Identities=11% Similarity=0.041 Sum_probs=256.4
Q ss_pred HHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHhc
Q 047120 89 AIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAF-GSDLFLQNCLISLYVRC 167 (634)
Q Consensus 89 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~ 167 (634)
+=+.-+.++|++++|....++++..+ +-+...+..-+-++.+.+.+++|+.+.+. .+. ..+...+---..+..+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhhhcchhhHHHHHHHHHc
Confidence 34556677889999999999998854 44455677778888899999999855433 221 11111111122334478
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC
Q 047120 168 GYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE 247 (634)
Q Consensus 168 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 247 (634)
+..++|++.++.....+..+...-...+.+.|++++|+++|+.+.+...+..--....+..+... ...+. +.+..+.
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a--~l~~~-~~q~v~~ 169 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA--ALQVQ-LLQSVPE 169 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--hhhHH-HHHhccC
Confidence 89999999998665556667777778888999999999999999765332222222222211110 11111 3444444
Q ss_pred CCchHHHHHH---HHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCCh-hhHHHHHHHHH
Q 047120 248 RDLISWNSML---HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDV-VACNAMMGGYV 323 (634)
Q Consensus 248 ~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~ 323 (634)
....+|..+. -.++..|++.+|+++++...+-...+ +. .++. .. +.+ +... .+-..|...+.
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~-------l~-~~d~--~e---Eei-e~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREK-------LE-DEDT--NE---EEI-EEELNPIRVQLAYVLQ 235 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh-------hc-cccc--ch---hhH-HHHHHHHHHHHHHHHH
Confidence 3333444433 34456777777777776542100000 00 0000 00 000 0000 12233445566
Q ss_pred HcCCchHHHHHHHHHHhcCCCCCCHhHH----HHHHHHHHccCChH-HHHHHH------------HHHHHcCCCCchhHH
Q 047120 324 RNGYSMKALEIFDNMQCELYLHPDDASL----VIVLSAIAQLGHID-KGVAIH------------RYLEKDQFSLNGKHG 386 (634)
Q Consensus 324 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~----~~ll~~~~~~~~~~-~a~~~~------------~~~~~~~~~~~~~~~ 386 (634)
..|+..+|..++...... ..+|.... |.++..-....-++ .+...+ ..+... --..++
T Consensus 236 ~~Gqt~ea~~iy~~~i~~--~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~---qk~~i~ 310 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKR--NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK---QKQAIY 310 (652)
T ss_pred HhcchHHHHHHHHHHHHh--cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHH
Confidence 677777777777777654 23444221 11211111111111 011111 111100 001112
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhccCCC-hhHHHHHHHHHHH--cCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhc
Q 047120 387 VALIDMYSKCGSIENAIKVFEQIEDGS-VDHWNAMINGLAI--HGLGELAFDLLMEMERLSIEPDD--ITFTGLLNACAH 461 (634)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~ 461 (634)
...+-...-.+..+.+.++-....... ...+.+++....+ ...+..|.+++...-+. .|.. ......+.....
T Consensus 311 ~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 311 RNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHh
Confidence 222222223456667777766666433 2344444443322 23477888888887765 4443 455566667788
Q ss_pred cCCHHHHHHHHH--------HhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-----CCCCCHH----HHHHHH
Q 047120 462 AGLVKEGLLCFE--------LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-----PMEPNDV----IWRTLL 524 (634)
Q Consensus 462 ~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~----~~~~l~ 524 (634)
.|+++.|.+++. .+.+ +...+.+..++...|.+.++-+.|..++.+. ...+... ++.-+.
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 999999999998 4433 2334456677888888888877777777665 1122223 333333
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHH
Q 047120 525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577 (634)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 577 (634)
..-.+.|+-++|..+++++++.+|++......++.+|++. +.+.|..+-+.+
T Consensus 466 ~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 4445679999999999999999999999999999998865 455666665544
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=2.6e-09 Score=98.96 Aligned_cols=276 Identities=13% Similarity=0.078 Sum_probs=157.6
Q ss_pred cCChHHHHHHhhhCCCC---ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHH
Q 047120 294 LGRVDIARRLFDEMPKR---DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370 (634)
Q Consensus 294 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 370 (634)
.|++..|++...+-.+. ....|..-..+.-+.|+.+.+-.++.+..+. .-.++..............|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-AGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 47777777777665442 2233444445555667777777777776633 1123333444445556666777777776
Q ss_pred HHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCC-----------hhHHHHHHHHHHHcCChHHHHHHHHH
Q 047120 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGS-----------VDHWNAMINGLAIHGLGELAFDLLME 439 (634)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~~~~~~A~~~~~~ 439 (634)
...+.+.+ +-++.+......+|.+.|++.....++.++.+.. ..+|+.++.-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 66666654 3455666666677777777777777776665431 12455555444444444443444444
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCH
Q 047120 440 MERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM--PMEPND 517 (634)
Q Consensus 440 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~ 517 (634)
.-.+ .+-++..-..++.-+.+.|+.++|.++.++..+ .+..|.. ...-...+-++.+.-++..++. ..+.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 3332 333455555566666667777777777666665 3333331 1112234555555544444443 222334
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578 (634)
Q Consensus 518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 578 (634)
-.+.+|...|.+.+.+.+|...++.+++..| +...|..++.+|.+.|+..+|.++.++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 5666677777777777777777776666654 34567777777777777777777776654
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.7e-08 Score=92.34 Aligned_cols=389 Identities=10% Similarity=0.016 Sum_probs=244.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-ChhHHHHHHHHHHhCCChH-HHHHHHhhCccCCCChhHHHHHHHHHHhc
Q 047120 154 LFLQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMIDGYVKSGNIE-SARELFDSMPIRERNLISWNSVLNGYAQL 231 (634)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~p~~~~~~~ll~~~~~~ 231 (634)
...-...+.+|...++-+.|...+.+.+.. ...--|.|+..+.+.|.-+ ++.--+.+....-|- -...|.+..+.
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~---aL~~i~~ll~l 173 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPM---ALQVIEALLEL 173 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcch---HHHHHHHHHHH
Confidence 334445667777778888888888777653 3334444444444433222 222222222221111 11111111111
Q ss_pred C-CcHHHHHHHHhhCCCCCch-HHHHHHHHHH--hcCChHHHHHHHhhCC-----CCChhHHHHHHHHHHHcCChHHHHH
Q 047120 232 K-SGLQFAWQIFEKMPERDLI-SWNSMLHGCV--KCGKMDDAQALFDKMP-----KRDVVSWANMIDGYAKLGRVDIARR 302 (634)
Q Consensus 232 ~-~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~--~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~ 302 (634)
+ ++.+.+.-......-++.. +....+.+++ -.++...|...+-.+. ..|+.....+.+.+...|+.++|..
T Consensus 174 ~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~ 253 (564)
T KOG1174|consen 174 GVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAED 253 (564)
T ss_pred hhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHH
Confidence 1 1123333222222223332 3333344443 3344444444433222 3678888889999999999999999
Q ss_pred HhhhCCCCChhhHHH---HHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 047120 303 LFDEMPKRDVVACNA---MMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF 379 (634)
Q Consensus 303 ~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 379 (634)
.|++..--|+.+... ..-.+.+.|+++....+...+... ..-....|..-+...-...+++.|..+-+..++..
T Consensus 254 ~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~--~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~- 330 (564)
T KOG1174|consen 254 IFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK--VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE- 330 (564)
T ss_pred HHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh--hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-
Confidence 998877544433222 233456778888888777777633 11222333333344456677888888777777654
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047120 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLL 456 (634)
Q Consensus 380 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 456 (634)
+.+...+-.-..++...+++++|.-.|+... ..+..+|..|+.+|...|++.+|...-+...+. +..+..++..+.
T Consensus 331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g 409 (564)
T KOG1174|consen 331 PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFG 409 (564)
T ss_pred cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhc
Confidence 3344555555677888899999988888765 347789999999999999999998887776654 344555666553
Q ss_pred -HHHh-ccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC
Q 047120 457 -NACA-HAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRTLLSACRNYEN 532 (634)
Q Consensus 457 -~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~ 532 (634)
..|. ...--++|..++++..+ +.|+ ....+.+...+.+.|..++++.++++. ...||....+.|...+...+.
T Consensus 410 ~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne 486 (564)
T KOG1174|consen 410 TLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNE 486 (564)
T ss_pred ceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhh
Confidence 3333 33445788888887765 3565 455677888899999999999999887 678999999999999999999
Q ss_pred hhHHHHHHHHHhccCCCCCc
Q 047120 533 LNVGEPVAKHLIGMDSSNSS 552 (634)
Q Consensus 533 ~~~a~~~~~~~~~~~p~~~~ 552 (634)
+++|...|..+++++|.+..
T Consensus 487 ~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 487 PQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHHHHHHHHHHhcCccchH
Confidence 99999999999999998743
No 64
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=2e-07 Score=95.88 Aligned_cols=243 Identities=13% Similarity=0.214 Sum_probs=166.0
Q ss_pred CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcC-----------
Q 047120 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ----------- 378 (634)
Q Consensus 310 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------- 378 (634)
.|+..-...+.+++..+-+.+-+++++++.-.+..-........++-.-+-.-+.....++.+++-...
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~ 1061 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIEN 1061 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhh
Confidence 466667778899999999999999999987543222222222222222222223333344433333221
Q ss_pred ------------CCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 047120 379 ------------FSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE 446 (634)
Q Consensus 379 ------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 446 (634)
+..+......|++ .-+.++.|.++-+++. .+..|..+..+-.+.|...+|++-|-+.
T Consensus 1062 ~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------ 1130 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------ 1130 (1666)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------
Confidence 1111112222221 1233444444444433 3457999999999999999998877653
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047120 447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526 (634)
Q Consensus 447 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 526 (634)
-|+..|..++..+.+.|.|++-.+++..++++ .-+|.+++ .|+-+|++.++..+-.+++. .|+..-...+..-
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id~--eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdr 1203 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYIDS--ELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDR 1203 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccchH--HHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHH
Confidence 36788999999999999999999999988873 44666554 78999999999998877764 4888888889999
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120 527 CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578 (634)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 578 (634)
|...|.++.|.-+|.. .+.|..|+..+...|.++.|...-+++.
T Consensus 1204 cf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1204 CFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999888764 3678888899999999988877766553
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.29 E-value=6.8e-10 Score=110.45 Aligned_cols=191 Identities=12% Similarity=0.143 Sum_probs=132.4
Q ss_pred HHHHhHhcCCHHHHHHHHHhccC--------CC---hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCC-H-H
Q 047120 389 LIDMYSKCGSIENAIKVFEQIED--------GS---VDHWNAMINGLAIHGLGELAFDLLMEMER-----LSIEPD-D-I 450 (634)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~-~-~ 450 (634)
+...|...+++++|..+|+++.. .+ ..+++.|..+|.+.|++++|...+++..+ .|..+. . .
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 44455555555555555554431 11 12455566666666666666555554332 122222 2 2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcC--cccC----hhHHHHHHHHHhccCCHHHHHHHHHhC---------CCCC
Q 047120 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHK--LEPE----LQHYGCMVDILGRAGHIEAARNLIEDM---------PMEP 515 (634)
Q Consensus 451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p 515 (634)
.++.+...|+..+++++|..+++...+... +.++ ..+++.|...|...|++++|.++++++ +..+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 567777788899999999999887766432 2222 456899999999999999999999877 1122
Q ss_pred C-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc----CCCCCc---hHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 516 N-DVIWRTLLSACRNYENLNVGEPVAKHLIGM----DSSNSS---SYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 516 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
. ...++.+...|.+.+.+++|.++|.+.+.+ +|..|+ +|..|+.+|.+.|++++|.++.+....
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2 457788889999999999999999888654 455544 788999999999999999999988853
No 66
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=4.4e-12 Score=84.43 Aligned_cols=50 Identities=22% Similarity=0.411 Sum_probs=44.6
Q ss_pred CCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 047120 82 KDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131 (634)
Q Consensus 82 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 131 (634)
||+.+||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999988874
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=5.4e-08 Score=88.58 Aligned_cols=440 Identities=12% Similarity=0.069 Sum_probs=236.6
Q ss_pred HHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHH-HhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 047120 91 IKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA-CSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY 169 (634)
Q Consensus 91 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 169 (634)
+.-+..++++..|+.+++--...+-. ........|.. +...|++++|...+..+.+.. .++...+-.|.-++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 56666677888888888765543311 12234444443 347788888888887777643 5566666666666666777
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCC
Q 047120 170 LEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERD 249 (634)
Q Consensus 170 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 249 (634)
+.+|..+-+..++ +...-..|...--+.++-++-..+-+.+....
T Consensus 107 Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~---------------------------------- 151 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL---------------------------------- 151 (557)
T ss_pred HHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH----------------------------------
Confidence 7777777665543 22222333344444555444444333332211
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHhhCCCC--ChhHHHH-HHHHHHHcCChHHHHHHhhhCCC--C-ChhhHHHHHHHHH
Q 047120 250 LISWNSMLHGCVKCGKMDDAQALFDKMPKR--DVVSWAN-MIDGYAKLGRVDIARRLFDEMPK--R-DVVACNAMMGGYV 323 (634)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~ 323 (634)
..-.++.+.....-.+.+|++++.++... +....|. +.-.|.+..-++-+.++++--.. | ++.+.|.......
T Consensus 152 -EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 152 -EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLF 230 (557)
T ss_pred -HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHh
Confidence 01111222222233344444444444432 2222222 12233444444444444332221 2 2233343333333
Q ss_pred HcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHH----HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCH
Q 047120 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI----AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSI 399 (634)
Q Consensus 324 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 399 (634)
+.=.-..|.+-.+.+... +... |-..-..| .--.+-+.|.+++--+.+. -+.....|+-.|.+.+++
T Consensus 231 Rl~ngr~ae~E~k~ladN--~~~~---~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dV 301 (557)
T KOG3785|consen 231 RLINGRTAEDEKKELADN--IDQE---YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDV 301 (557)
T ss_pred hhhccchhHHHHHHHHhc--cccc---chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccH
Confidence 332222333333333322 1100 11111111 1112345555555444332 123333566668889999
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHcCC-------hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHH
Q 047120 400 ENAIKVFEQIEDGSVDHWNAMINGLAIHGL-------GELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGLVKEGLLC 471 (634)
Q Consensus 400 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~ 471 (634)
.+|..+...+...++.-|-.-.-.++..|+ ..-|...|+-.-+.+..-|.. .--.+..++.-..++++.+-+
T Consensus 302 qeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Y 381 (557)
T KOG3785|consen 302 QEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTY 381 (557)
T ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 999999888876666555443334444443 344555555544444443322 233444555556788999999
Q ss_pred HHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCC-CC-CCHHHHHHHH-HHHHhcCChhHHHHHHHHHhccC-
Q 047120 472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP-ME-PNDVIWRTLL-SACRNYENLNVGEPVAKHLIGMD- 547 (634)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~- 547 (634)
+..+.. +-...|...+ .+..+++..|.+.+|+++|-.+. .+ .|..+|.+++ ..|.+.+..+.|+.++-+ .+
T Consensus 382 lnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk---~~t 456 (557)
T KOG3785|consen 382 LNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLK---TNT 456 (557)
T ss_pred HHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh---cCC
Confidence 998877 4444444444 47899999999999999998882 22 4566776555 557889999999866543 33
Q ss_pred CCC-CchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 548 SSN-SSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 548 p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
|.+ -.....+++.|.+++.+=-|-+.|+.+...+.
T Consensus 457 ~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 457 PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 322 23455567788899998888888888876644
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.26 E-value=1.7e-09 Score=113.12 Aligned_cols=246 Identities=13% Similarity=0.026 Sum_probs=179.8
Q ss_pred CCchHHHHHHHHHHhcCCCCCCHh-HHHHHHHHHH---------ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh
Q 047120 326 GYSMKALEIFDNMQCELYLHPDDA-SLVIVLSAIA---------QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395 (634)
Q Consensus 326 g~~~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 395 (634)
++.++|+.+|++.. ...|+.. .+..+..++. ..+++++|...++++.+.. +.+...+..+..++..
T Consensus 275 ~~~~~A~~~~~~Al---~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 275 YSLQQALKLLTQCV---NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHH---hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 34578888998888 4467543 4444433332 2345788999999888865 4567788888888999
Q ss_pred cCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHH
Q 047120 396 CGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGLVKEGLLC 471 (634)
Q Consensus 396 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~ 471 (634)
.|++++|...|+++.+ .+...+..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...
T Consensus 351 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999998763 35567888999999999999999999999885 55532 333445556678999999999
Q ss_pred HHHhHHhcCccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047120 472 FELMRRIHKLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDV-IWRTLLSACRNYENLNVGEPVAKHLIGMDS 548 (634)
Q Consensus 472 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 548 (634)
++++.+. . .| +...+..+..+|...|++++|...++++ +..|+.. ..+.+...+...| +.|...++++++...
T Consensus 429 ~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 429 GDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 9988762 1 34 3445777888999999999999999987 5556644 4455555667777 488888888777654
Q ss_pred CCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 549 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
..+.....+..+|.-.|+-+.+... +++.+.+-
T Consensus 505 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 505 RIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred HhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 4443444477778888888777777 88877654
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=3.4e-10 Score=101.40 Aligned_cols=229 Identities=13% Similarity=0.157 Sum_probs=151.4
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh
Q 047120 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK 395 (634)
Q Consensus 316 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 395 (634)
+.+.++|.+.|-+.+|.+.|+..... .|-..||..+-.+|.+..+++.|..++.+-.+. ++.++.........+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 46777888888888888888777744 566667777777777777777777777766654 34454444555566666
Q ss_pred cCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 047120 396 CGSIENAIKVFEQIEDG---SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCF 472 (634)
Q Consensus 396 ~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 472 (634)
.++.++|.++|+...+. ++.....+...|.-.++++-|+.+++++.+.|+. ++..|..+.-+|.-.+++|-++..|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 66666666666655432 3333444445555556666666666666665543 4455555555555555555555544
Q ss_pred HHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047120 473 ELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPN--DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550 (634)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (634)
+.+... ...|+ ..+|..+.......||+..|.+.|+-++..+|++
T Consensus 382 ~RAlst---------------------------------at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 382 QRALST---------------------------------ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHHHhh---------------------------------ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 444331 11233 3466677777777888888888888888888888
Q ss_pred CchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 551 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
...++.|+.+-.+.|++++|..++....+...
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 88888888888888888888888888766543
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=4.4e-07 Score=84.56 Aligned_cols=384 Identities=12% Similarity=0.057 Sum_probs=246.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCc-HHHHHHHHhhCCCCCchHHHHHHHHHHhc--
Q 047120 187 SYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSG-LQFAWQIFEKMPERDLISWNSMLHGCVKC-- 263 (634)
Q Consensus 187 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-- 263 (634)
.-.-++.+|-..++-+.|+..+...... ......+.++..+.+.|.. .+.... +......-+.... .|.+..+.
T Consensus 99 ~~r~~aecy~~~~n~~~Ai~~l~~~p~t-~r~p~inlMla~l~~~g~r~~~~vl~-ykevvrecp~aL~-~i~~ll~l~v 175 (564)
T KOG1174|consen 99 QRRRAAECYRQIGNTDMAIETLLQVPPT-LRSPRINLMLARLQHHGSRHKEAVLA-YKEVIRECPMALQ-VIEALLELGV 175 (564)
T ss_pred HHHHHHHHHHHHccchHHHHHHhcCCcc-ccchhHHHHHHHHHhccccccHHHHh-hhHHHHhcchHHH-HHHHHHHHhh
Confidence 3445677788888999999998887654 1222334444444444331 111111 1111000011100 01111110
Q ss_pred CChHHHHHHHhhCCC-CChhHHHHHHHHHHH--cCChHHHHHHhhhCC-----CCChhhHHHHHHHHHHcCCchHHHHHH
Q 047120 264 GKMDDAQALFDKMPK-RDVVSWANMIDGYAK--LGRVDIARRLFDEMP-----KRDVVACNAMMGGYVRNGYSMKALEIF 335 (634)
Q Consensus 264 g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~ 335 (634)
.-.+.+-.....+.- ++..+....+.++.. .++...|...+-.+. ..|+.....+...+...|+.++|+..|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 011111111111111 223333344444443 445455554443333 357888999999999999999999999
Q ss_pred HHHHhcCCCCCCHhH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCC--
Q 047120 336 DNMQCELYLHPDDAS-LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG-- 412 (634)
Q Consensus 336 ~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-- 412 (634)
++.. .+.|+..+ .....-.+.+.|+.+....+...+.... ..+...|-.-........+++.|+.+-++..+.
T Consensus 256 e~~~---~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~ 331 (564)
T KOG1174|consen 256 SSTL---CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP 331 (564)
T ss_pred HHHh---hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc
Confidence 9998 45676543 2222333467888888888777766532 123333333444556678899999999887754
Q ss_pred -ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHH
Q 047120 413 -SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC 490 (634)
Q Consensus 413 -~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 490 (634)
+...|-.-...+...++.++|.-.|+.... +.|. ..+|..|+.+|...|++.+|...-+...+. +..+..+...
T Consensus 332 r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL 407 (564)
T KOG1174|consen 332 RNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTL 407 (564)
T ss_pred ccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhh
Confidence 444555555778899999999999999886 4654 579999999999999999999887776653 3345555444
Q ss_pred HH-HHHh-ccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCC
Q 047120 491 MV-DILG-RAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGM 566 (634)
Q Consensus 491 l~-~~~~-~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 566 (634)
+. ..+. ...--++|.+++++. .+.|+ ....+.+...|...|..+.++.++++.+...|+. .....|++++...+.
T Consensus 408 ~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne 486 (564)
T KOG1174|consen 408 FGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNE 486 (564)
T ss_pred hcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhh
Confidence 42 2222 223357899999987 77888 4477778888999999999999999999888754 688999999999999
Q ss_pred chHHHHHHHHHHhCCC
Q 047120 567 WNDARRVRSMMKERNL 582 (634)
Q Consensus 567 ~~~A~~~~~~~~~~~~ 582 (634)
+++|.+.|..+...+.
T Consensus 487 ~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 487 PQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHHHHHHHHhcCc
Confidence 9999999999877655
No 71
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.24 E-value=2.5e-08 Score=90.37 Aligned_cols=339 Identities=17% Similarity=0.198 Sum_probs=217.9
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCChhHHHHHH---HHHHHcCChHHHHHHhhhCCCCChhhHHH---HHHHHHHcCCch
Q 047120 256 MLHGCVKCGKMDDAQALFDKMPKRDVVSWANMI---DGYAKLGRVDIARRLFDEMPKRDVVACNA---MMGGYVRNGYSM 329 (634)
Q Consensus 256 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~ 329 (634)
+.+.+...|++.+|+.-|....+.|+..|.++. ..|...|+-.-|+.-|.++.+--+..+.+ -...+.+.|.++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 455666677777777777777766666555543 34666666666666666655422222222 234566777777
Q ss_pred HHHHHHHHHHhcCCCCCCHh----------------HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHh
Q 047120 330 KALEIFDNMQCELYLHPDDA----------------SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMY 393 (634)
Q Consensus 330 ~A~~~~~~m~~~~~~~p~~~----------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 393 (634)
+|..=|+..... .|+.. .....+..+...|+...|+.+...+++.. +.+...+..-..+|
T Consensus 124 ~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 124 QAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY 199 (504)
T ss_pred HHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence 777777777644 33211 12233445566788888888888888754 55778888888999
Q ss_pred HhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HH---HHH---------HH
Q 047120 394 SKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI-TF---TGL---------LN 457 (634)
Q Consensus 394 ~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~---~~l---------l~ 457 (634)
...|++..|+.-++... ..+.....-+-..+...|+.+.++...++..+ +.||.. +| ..| +.
T Consensus 200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 99999998877665543 45666777777788888999988888888886 467753 22 111 11
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCcccC-----hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 047120 458 ACAHAGLVKEGLLCFELMRRIHKLEPE-----LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNY 530 (634)
Q Consensus 458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 530 (634)
.....++|.++++..+...+. .|. ...+..+-.++...|++.+|+....++ .+.|| ..++.--..+|.-.
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 233456777777777766652 333 223455566677778888888877776 55666 55777777778777
Q ss_pred CChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCccCCceeEEEEcCEEEEEEeCCCCCcch
Q 047120 531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQV 610 (634)
Q Consensus 531 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (634)
..++.|+.-|+++.+.++.+..+-.- .+.|.++.++..+++.-+..| +.+.-++.+.
T Consensus 355 E~YD~AI~dye~A~e~n~sn~~~reG----------le~Akrlkkqs~kRDYYKILG-------------VkRnAsKqEI 411 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALELNESNTRAREG----------LERAKRLKKQSGKRDYYKILG-------------VKRNASKQEI 411 (504)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHHhccchHHHHhh-------------hcccccHHHH
Confidence 88888888888888888776433222 244555555444444333333 2222344556
Q ss_pred hHHHHHHHhcccCccc
Q 047120 611 RDIYYMLDNMWTPDSV 626 (634)
Q Consensus 611 ~~~~~~~~~~~~~~~~ 626 (634)
...|+-+..-|.||-.
T Consensus 412 ~KAYRKlAqkWHPDNF 427 (504)
T KOG0624|consen 412 TKAYRKLAQKWHPDNF 427 (504)
T ss_pred HHHHHHHHHhcCCccc
Confidence 7779999999999965
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.23 E-value=4.4e-09 Score=97.87 Aligned_cols=161 Identities=14% Similarity=0.080 Sum_probs=89.7
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh
Q 047120 385 HGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACA 460 (634)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~ 460 (634)
.+..+...+...|++++|.+.+++.. +.+...+..+...+...|++++|...+++.......|. ...+..+...+.
T Consensus 67 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (234)
T TIGR02521 67 AYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCAL 146 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 33344444444444444444444433 12333455555556666666666666666654322222 334555566666
Q ss_pred ccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHH
Q 047120 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSACRNYENLNVGEP 538 (634)
Q Consensus 461 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~ 538 (634)
..|++++|...++.+... .+.+...+..+...+...|++++|.+.+++. .. +.+...+..+...+...|+.++|..
T Consensus 147 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (234)
T TIGR02521 147 KAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQR 224 (234)
T ss_pred HcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 777777777777766652 1223445666667777777777777777665 22 2334455555566666777777777
Q ss_pred HHHHHhccC
Q 047120 539 VAKHLIGMD 547 (634)
Q Consensus 539 ~~~~~~~~~ 547 (634)
+.+.+.+..
T Consensus 225 ~~~~~~~~~ 233 (234)
T TIGR02521 225 YGAQLQKLF 233 (234)
T ss_pred HHHHHHhhC
Confidence 766665443
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=1e-09 Score=98.44 Aligned_cols=191 Identities=13% Similarity=0.115 Sum_probs=159.7
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccC
Q 047120 387 VALIDMYSKCGSIENAIKVFEQIE--DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT-GLLNACAHAG 463 (634)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g 463 (634)
..+.++|.+.|-+.+|.+.++... .+-+.+|-.|..+|.+..++..|+.++.+-.+. .|-.+||. ...+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 356778888888888888887665 467788888999999999999999999998874 67666654 5667888899
Q ss_pred CHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 047120 464 LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM---PMEPNDVIWRTLLSACRNYENLNVGEPVA 540 (634)
Q Consensus 464 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 540 (634)
+.++|.++|+.+.+.. +.+++...++...|.-.++++-|+.+++++ + .-++..|+.+.-.|.-.++++.+...+
T Consensus 305 ~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 9999999999998843 346777778888999999999999999986 4 356788888988899999999999999
Q ss_pred HHHhccCC---CCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 541 KHLIGMDS---SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 541 ~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
++++.... .-.+.|+.++.+....|++.-|.+.|+-....+.
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 99987652 3466999999999999999999999998876654
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=3.8e-09 Score=101.02 Aligned_cols=116 Identities=13% Similarity=-0.044 Sum_probs=58.9
Q ss_pred CCchHHHHHHHHHHhcCCCCCCH--hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 047120 326 GYSMKALEIFDNMQCELYLHPDD--ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAI 403 (634)
Q Consensus 326 g~~~~A~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 403 (634)
+..+.++.-+.++.......|+. ..|..+...+...|+.+.|...|+.+.+.. +.++..+..+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44455555555555432233322 234444445555566666665555555543 233455555555555555555555
Q ss_pred HHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047120 404 KVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMER 442 (634)
Q Consensus 404 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 442 (634)
..|++..+ .+...|..+..++...|++++|++.|++..+
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555432 1233455555555555555555555555554
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=4.4e-09 Score=110.09 Aligned_cols=211 Identities=11% Similarity=-0.028 Sum_probs=165.2
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh---------cCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCC
Q 047120 362 GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK---------CGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGL 429 (634)
Q Consensus 362 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 429 (634)
++.++|...++++.+.. +.+...+..+..++.. .+++++|...++++.+ .+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678999999888764 3345566666655542 3458899999998773 366788888899999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccCh-hHHHHHHHHHhccCCHHHHHHH
Q 047120 430 GELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL-QHYGCMVDILGRAGHIEAARNL 507 (634)
Q Consensus 430 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 507 (634)
+++|...|++..+. .|+ ...+..+..++...|++++|...++.+.+. .|+. ..+..++..+...|++++|++.
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999985 566 557888889999999999999999999874 4442 2333445557778999999999
Q ss_pred HHhC--CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 508 IEDM--PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 508 ~~~~--~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
++++ ...|+ +..+..+..++...|++++|...++++....|.+......++..|...| ++|...++++.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 9887 22454 4456777788889999999999999988888888888888888888888 5888888887654
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.17 E-value=7.5e-07 Score=87.96 Aligned_cols=124 Identities=13% Similarity=0.116 Sum_probs=77.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 047120 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSAC 527 (634)
Q Consensus 451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~ 527 (634)
|+..++..+-..|+++.|..+++.+... .|+ ++.|..=.+.+...|++++|...+++. .+ .||...-.-.+.-.
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdH---TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDH---TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhcc---CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 4555667777888888888888877652 344 445656667778888888888888877 32 23433333455556
Q ss_pred HhcCChhHHHHHHHHHhccCCCC-------CchHHHH--HHHHhcCCCchHHHHHHHHH
Q 047120 528 RNYENLNVGEPVAKHLIGMDSSN-------SSSYVLL--SNMFAGLGMWNDARRVRSMM 577 (634)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l--~~~~~~~g~~~~A~~~~~~~ 577 (634)
.+.++.++|.+++.+--+.+-.- .-.|+.+ +.+|.++|++..|.+=|..+
T Consensus 450 LrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 67788888887776655444210 1134433 45577777777666655544
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=3.1e-08 Score=94.82 Aligned_cols=211 Identities=12% Similarity=0.075 Sum_probs=119.9
Q ss_pred ChHHHHHHHHHHHHcC-CCC--chhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHH
Q 047120 363 HIDKGVAIHRYLEKDQ-FSL--NGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDL 436 (634)
Q Consensus 363 ~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~ 436 (634)
..+.++.-+.+++... ..| ....+..+...|...|++++|...|++.. ..++..|+.+...+...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555555421 111 13445566666777777777777776654 23455677777777777777777777
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC--CC
Q 047120 437 LMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM--PM 513 (634)
Q Consensus 437 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~ 513 (634)
|++..+. .|+ ..++..+..++...|++++|.+.++...+. .|+..........+...+++++|...+++. ..
T Consensus 121 ~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 7777653 554 446666666677777777777777776653 333222222222334556677777777553 22
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHh-------ccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 514 EPNDVIWRTLLSACRNYENLNVGEPVAKHLI-------GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 514 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
.|+...+ .......|+...+ ..++.+. +..|..+..|..++.++.+.|++++|+..|++..+.++
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2332221 1122234444333 2333333 23344556777777777777777777777777766554
No 78
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.15 E-value=6.2e-07 Score=89.37 Aligned_cols=340 Identities=17% Similarity=0.136 Sum_probs=148.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChh-HHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHH
Q 047120 160 LISLYVRCGYLEFARQLFDKMGIRDSV-SYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFA 238 (634)
Q Consensus 160 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a 238 (634)
-|.+|....+|++|+.+-+....|... .-.+.++++...|+-++|-++-. .+.. -.+.|..|.+.|.....+
T Consensus 563 aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~------sdgd-~laaiqlyika~~p~~a~ 635 (1636)
T KOG3616|consen 563 AIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKE------SDGD-GLAAIQLYIKAGKPAKAA 635 (1636)
T ss_pred HHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhcc------ccCc-cHHHHHHHHHcCCchHHH
Confidence 455666667777777776665544322 23344555666666666654321 1111 123455666666622222
Q ss_pred HHHHhhC-CCCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChh-hHH
Q 047120 239 WQIFEKM-PERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV-ACN 316 (634)
Q Consensus 239 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~ 316 (634)
...+..- ...|......+..++.+..-+++|-.+|+++..++.. +..|-+-.-+.+|.++-+-.-...++ .-.
T Consensus 636 ~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dka-----le~fkkgdaf~kaielarfafp~evv~lee 710 (1636)
T KOG3616|consen 636 RAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKA-----LECFKKGDAFGKAIELARFAFPEEVVKLEE 710 (1636)
T ss_pred HhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHH-----HHHHHcccHHHHHHHHHHhhCcHHHhhHHH
Confidence 2222211 1145555555555566655666666666655443221 11121211222232222111100111 011
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047120 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC 396 (634)
Q Consensus 317 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 396 (634)
.....+...|+++.|+..|-+... ....+.+......+.+|+.+++.+.+... ....|..+.+-|...
T Consensus 711 ~wg~hl~~~~q~daainhfiea~~----------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~ 778 (1636)
T KOG3616|consen 711 AWGDHLEQIGQLDAAINHFIEANC----------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANK 778 (1636)
T ss_pred HHhHHHHHHHhHHHHHHHHHHhhh----------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccc
Confidence 112233344444444444433321 12233344444555555555555554322 122344445555555
Q ss_pred CCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 047120 397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMR 476 (634)
Q Consensus 397 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 476 (634)
|+++.|.++|-+.. .++-.|..|.+.|+|+.|.++-.+.. |.......|..-..-+-+.|++.+|.++|-.+.
T Consensus 779 ~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 779 GDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred hhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 55555555554432 23334555555555555555544433 112223344444444445555555555543332
Q ss_pred HhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 047120 477 RIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVA 540 (634)
Q Consensus 477 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 540 (634)
.|+. -|.+|-+.|..++.+++..+-.-..-..|-..+..-+...|++..|+..|
T Consensus 852 -----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 852 -----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred -----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHH
Confidence 1331 23445555555555555544310111223333444444445555554444
No 79
>PF13041 PPR_2: PPR repeat family
Probab=99.15 E-value=1.5e-10 Score=76.97 Aligned_cols=50 Identities=32% Similarity=0.472 Sum_probs=43.3
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 047120 412 GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461 (634)
Q Consensus 412 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 461 (634)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57788888888888888888888888888888888888888888888874
No 80
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=1.1e-07 Score=84.64 Aligned_cols=381 Identities=10% Similarity=0.019 Sum_probs=217.7
Q ss_pred HHHHHHhCCChHHHHHHHhhCccCCC-ChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC--CCchHHHHH-HHHHHhcCCh
Q 047120 191 MIDGYVKSGNIESARELFDSMPIRER-NLISWNSVLNGYAQLKSGLQFAWQIFEKMPE--RDLISWNSM-LHGCVKCGKM 266 (634)
Q Consensus 191 li~~~~~~g~~~~A~~~~~~m~~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l-~~~~~~~g~~ 266 (634)
.+..+++..+++.|++++..-.+..| +....+.+..+|....+ +..|-..++++-. |...-|... ...+.+.+.+
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~-f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE-FALAAECYEQLGQLHPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhccc
Confidence 33334444445555555544444433 33333334444444444 5555555554443 322222221 3455667777
Q ss_pred HHHHHHHhhCCC-CChhHHHHHHHH--HHHcCChHHHHHHhhhCC-CCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcC
Q 047120 267 DDAQALFDKMPK-RDVVSWANMIDG--YAKLGRVDIARRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342 (634)
Q Consensus 267 ~~A~~~~~~~~~-~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 342 (634)
.+|+++...|.. ++...-..-+.+ ....+++..+..++++.. +.+..+.+.......+.|++++|++-|+...+-+
T Consensus 95 ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 95 ADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 788888777765 222222222222 234678888888888888 4666677777777788889999999888888776
Q ss_pred CCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCch----------------------------hHHHHHHHHhH
Q 047120 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG----------------------------KHGVALIDMYS 394 (634)
Q Consensus 343 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~ 394 (634)
|..|- ..|+..+ +..+.++.+.|.+...+++++|++..+ ..++.-...+.
T Consensus 175 Gyqpl-lAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIey 252 (459)
T KOG4340|consen 175 GYQPL-LAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEY 252 (459)
T ss_pred CCCch-hHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhh
Confidence 77664 3455544 344668888888888888877653211 11222233356
Q ss_pred hcCCHHHHHHHHHhccC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHH
Q 047120 395 KCGSIENAIKVFEQIED-----GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP-DDITFTGLLNACAHAGLVKEG 468 (634)
Q Consensus 395 ~~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a 468 (634)
+.++++.|.+.+..|+. .|+++...+.-.- ..+++.+..+-+.-+... .| ...||..++-.||+..-++-|
T Consensus 253 q~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNeyf~lA 329 (459)
T KOG4340|consen 253 QLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEYFDLA 329 (459)
T ss_pred hcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHHHhHH
Confidence 78999999999999974 3677665544322 235566666666666654 44 456999999999999999888
Q ss_pred HHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcC----ChhHHHHHHHHH
Q 047120 469 LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSAC-RNYE----NLNVGEPVAKHL 543 (634)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~-~~~g----~~~~a~~~~~~~ 543 (634)
-.++.+-....-.-.+...|+.|=......-..++|.+-++.+.-.-....-...+..- .+.. ....+++-|+..
T Consensus 330 ADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~ 409 (459)
T KOG4340|consen 330 ADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDET 409 (459)
T ss_pred HHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88876533210001223334433222334556777776665541011111111111111 1111 123333444444
Q ss_pred hccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 544 IGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 544 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
+++.- ......+++|++..++..+.+.|..-.+.
T Consensus 410 LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 410 LEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 44331 13445678899999999999999876554
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.14 E-value=4.7e-09 Score=90.01 Aligned_cols=163 Identities=13% Similarity=0.035 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHH
Q 047120 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD-ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494 (634)
Q Consensus 416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 494 (634)
+...|...|.+.|+...|..-+++.++. .|+. .++..+...|.+.|+.+.|.+.|+.+.+. -+.+-.+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHH
Confidence 3455777888999999999999998875 6664 48888888899999999999999988763 13346678888888
Q ss_pred HhccCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHH
Q 047120 495 LGRAGHIEAARNLIEDMPMEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDA 570 (634)
Q Consensus 495 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 570 (634)
+|..|++++|...|+++-..|+ ..+|..+..+..+.|+.+.|+..+++.++.+|..+...-.++....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999988733333 458888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 047120 571 RRVRSMMKERNL 582 (634)
Q Consensus 571 ~~~~~~~~~~~~ 582 (634)
..++++....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998877665
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.11 E-value=2.7e-06 Score=84.13 Aligned_cols=224 Identities=11% Similarity=0.009 Sum_probs=127.0
Q ss_pred hhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHH
Q 047120 47 HLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVL 126 (634)
Q Consensus 47 ~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 126 (634)
..+...+..|-..- + ...+++.+.+.+..+. -..|.....-.+..-|+-++|.+....-.+.. .-+.+-|+.+.
T Consensus 9 ~lF~~~lk~yE~kQ-Y---kkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~g 82 (700)
T KOG1156|consen 9 ALFRRALKCYETKQ-Y---KKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLG 82 (700)
T ss_pred HHHHHHHHHHHHHH-H---HhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHH
Confidence 34555666664333 2 4444444444332111 12333333334445578888888777665532 23444566666
Q ss_pred HHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCChHH
Q 047120 127 KACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI---RDSVSYNSMIDGYVKSGNIES 203 (634)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 203 (634)
-.+....++++|..+|..++..+ +-|..++.-+.-.-+..|+++.....-....+ .....|..++.++.-.|+...
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 66666778888888888888765 33556666555555555666655555444332 345578888888888888888
Q ss_pred HHHHHhhCccC---CCChhHHHHHHHHH------HhcCCcHHHHHHHHhhCCC--CCchHH-HHHHHHHHhcCChHHHHH
Q 047120 204 ARELFDSMPIR---ERNLISWNSVLNGY------AQLKSGLQFAWQIFEKMPE--RDLISW-NSMLHGCVKCGKMDDAQA 271 (634)
Q Consensus 204 A~~~~~~m~~~---~p~~~~~~~ll~~~------~~~~~~~~~a~~~~~~~~~--~~~~~~-~~l~~~~~~~g~~~~A~~ 271 (634)
|..++++.... .|+...+......+ .+.|. ++.|.+.+..... .|-..+ ..-...+.+.+++++|..
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~-~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGS-LQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHccc-HHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 88888777655 36665554433332 33444 5555555544433 222222 223345556666666666
Q ss_pred HHhhCCC
Q 047120 272 LFDKMPK 278 (634)
Q Consensus 272 ~~~~~~~ 278 (634)
++..+..
T Consensus 241 ~y~~Ll~ 247 (700)
T KOG1156|consen 241 VYRRLLE 247 (700)
T ss_pred HHHHHHh
Confidence 6666654
No 83
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.10 E-value=1.6e-06 Score=86.59 Aligned_cols=472 Identities=14% Similarity=0.130 Sum_probs=267.8
Q ss_pred hhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHH
Q 047120 47 HLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVL 126 (634)
Q Consensus 47 ~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 126 (634)
..-.+.++++...|.. +.|-+ ++ ..+..+. +.|+.|.+.|.+.+|.+....=.. +..|......+.
T Consensus 590 klk~sy~q~l~dt~qd---~ka~e----lk----~sdgd~l-aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia 655 (1636)
T KOG3616|consen 590 KLKRSYLQALMDTGQD---EKAAE----LK----ESDGDGL-AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIA 655 (1636)
T ss_pred HHHHHHHHHHHhcCch---hhhhh----hc----cccCccH-HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHH
Confidence 3446667777777776 55532 32 1233333 567888888888887765433222 334444444444
Q ss_pred HHHhccCChHHHHHHHHHHHHh-------------c---------CCCChhHH-HHHHHHHHhcCCHHHHHHHHhhCCCC
Q 047120 127 KACSRLGLIEEGLQIHGLLRKV-------------A---------FGSDLFLQ-NCLISLYVRCGYLEFARQLFDKMGIR 183 (634)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~-------------g---------~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~ 183 (634)
.++.+..-+++|-.+|+.+..- | ++..+... ...-..+...|+++.|..-|-+.
T Consensus 656 ~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea--- 732 (1636)
T KOG3616|consen 656 AALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA--- 732 (1636)
T ss_pred HHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh---
Confidence 4444444444444444433210 0 00000000 00011112223333333332211
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhc
Q 047120 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKC 263 (634)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 263 (634)
.....-+.+......|.+|+.+++.+.......--|..+...|+..|+ ++.|.++|-+.. .++..|..|.+.
T Consensus 733 --~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~d-fe~ae~lf~e~~-----~~~dai~my~k~ 804 (1636)
T KOG3616|consen 733 --NCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGD-FEIAEELFTEAD-----LFKDAIDMYGKA 804 (1636)
T ss_pred --hhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchh-HHHHHHHHHhcc-----hhHHHHHHHhcc
Confidence 111223445566778888888888887765555667778888888888 999999886643 455668889999
Q ss_pred CChHHHHHHHhhCCCCC--hhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhc
Q 047120 264 GKMDDAQALFDKMPKRD--VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341 (634)
Q Consensus 264 g~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 341 (634)
|+|++|.++-++...|. ...|-+-..-+-+.|++.+|.+++-.+..|+.. |..|-+.|..+..+++..+-.
T Consensus 805 ~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~h-- 877 (1636)
T KOG3616|consen 805 GKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKHH-- 877 (1636)
T ss_pred ccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHhC--
Confidence 99999999988887654 445666666778889999999999888888753 677888899888888876553
Q ss_pred CCCCCCH--hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCCh-----
Q 047120 342 LYLHPDD--ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSV----- 414 (634)
Q Consensus 342 ~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----- 414 (634)
|+. .|...+..-+...|++..|..-|-+..+ |.+.+++|..++-+++|.++-+.-.-.+.
T Consensus 878 ----~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~ 944 (1636)
T KOG3616|consen 878 ----GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVA 944 (1636)
T ss_pred ----hhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHH
Confidence 332 3555666777788888888876654432 45677788888888888877654321111
Q ss_pred hHH-------------------HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 047120 415 DHW-------------------NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475 (634)
Q Consensus 415 ~~~-------------------~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 475 (634)
..| ..-+.--+..+.++-|.++-+-..+.. .|. ....+..-+...|++++|-+.|-++
T Consensus 945 flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~--vhlk~a~~ledegk~edaskhyvea 1021 (1636)
T KOG3616|consen 945 FLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKHYVEA 1021 (1636)
T ss_pred HHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Ccc--chhHHhhhhhhccchhhhhHhhHHH
Confidence 111 111222233444454554444333321 122 2233344456789999998877776
Q ss_pred HHhcCc-------ccChhHH---------HHHHHHHhccCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHH
Q 047120 476 RRIHKL-------EPELQHY---------GCMVDILGRAGHIEAARNLIEDMPMEPN--DVIWRTLLSACRNYENLNVGE 537 (634)
Q Consensus 476 ~~~~~~-------~~~~~~~---------~~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~ 537 (634)
.+.... .|+..-. ..-+.++.+..+|..|.++-+.- .|| +..+..-...-...|++.+|+
T Consensus 1022 iklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h--~~~~l~dv~tgqar~aiee~d~~kae 1099 (1636)
T KOG3616|consen 1022 IKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAH--CEDLLADVLTGQARGAIEEGDFLKAE 1099 (1636)
T ss_pred hhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhh--ChhhhHHHHhhhhhccccccchhhhh
Confidence 653211 1110000 01123445555555555554432 233 223444444456678888887
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHH
Q 047120 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSM 576 (634)
Q Consensus 538 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 576 (634)
.++-++- .|+ ...+.|...+.|.+|+++-+.
T Consensus 1100 ~fllran--kp~------i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1100 GFLLRAN--KPD------IALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred hheeecC--CCc------hHHHHHHHhccChHHHHHHHh
Confidence 7664432 232 123445567777777766543
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.07 E-value=1.8e-06 Score=87.11 Aligned_cols=430 Identities=13% Similarity=0.026 Sum_probs=269.1
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----
Q 047120 107 FCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI---- 182 (634)
Q Consensus 107 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 182 (634)
+.+++...+.-|...|..+.-++...|+++.+-+.|++.....+. ....|..+-..|...|.-..|..+++.-..
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 344444445667778888888888899999999999998765433 566788888899999999999999887543
Q ss_pred C-ChhHHHHHHHHHH-hCCChHHHHHHHhhCccC------CCChhHHHHHHHHHHhc----------CCcHHHHHHHHhh
Q 047120 183 R-DSVSYNSMIDGYV-KSGNIESARELFDSMPIR------ERNLISWNSVLNGYAQL----------KSGLQFAWQIFEK 244 (634)
Q Consensus 183 ~-~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~------~p~~~~~~~ll~~~~~~----------~~~~~~a~~~~~~ 244 (634)
| |...+-..-..|. +.+..++++++-.++... ......|..+.-+|... .....++.+.+++
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 2 2334444444444 345666666665555442 22333344444444221 0014456666666
Q ss_pred CCC---CCchHHHHHHHHHHhcCChHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHhhhCCCC---Chhh
Q 047120 245 MPE---RDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMPKR---DVVA 314 (634)
Q Consensus 245 ~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~ 314 (634)
..+ .|+....-+.--|+..++++.|++...+..+ .+...|..|.-.+...+++.+|+.+.+...+. |...
T Consensus 470 av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l 549 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL 549 (799)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 654 3333333344456778899999988887654 57889999999999999999999998876542 2221
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHH-c-CCCCchhHHHHHHHH
Q 047120 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK-D-QFSLNGKHGVALIDM 392 (634)
Q Consensus 315 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~~l~~~ 392 (634)
...-+..-..-++.++++.....+..-..-.|.. . ..++-....+....+.- . ...-.+.++..+...
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~---q-------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGV---Q-------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhH---h-------hhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 1122223334677777777776665321101110 0 01111111111111100 0 011112233322222
Q ss_pred hHhcCC---HHHHHHHHHhccCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc
Q 047120 393 YSKCGS---IENAIKVFEQIEDGS------VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHA 462 (634)
Q Consensus 393 ~~~~~~---~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 462 (634)
....+. .+..+..+.....++ ...|......+...+..++|.-.+.+.... .|- ...|......+...
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVK 697 (799)
T ss_pred HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHH
Confidence 221111 111111111112222 124666777888899999999888887753 444 55777777888899
Q ss_pred CCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHH--HHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHH
Q 047120 463 GLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARN--LIEDM-PMEPN-DVIWRTLLSACRNYENLNVGE 537 (634)
Q Consensus 463 g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~ 537 (634)
|++++|.+.|..+.. +.|+ +....++..++.+.|+..-|.+ ++.++ .+.|+ ...|..+...+.+.|+.+.|.
T Consensus 698 ~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred HhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHH
Confidence 999999999998875 3555 6678899999999998888887 88877 55665 779999999999999999999
Q ss_pred HHHHHHhccCCCCCc
Q 047120 538 PVAKHLIGMDSSNSS 552 (634)
Q Consensus 538 ~~~~~~~~~~p~~~~ 552 (634)
+.|+-++++++.+|.
T Consensus 775 ecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 775 ECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHhhccCCCc
Confidence 999999999876654
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=6.6e-08 Score=93.25 Aligned_cols=237 Identities=13% Similarity=0.052 Sum_probs=111.8
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc------hhHHHH
Q 047120 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN------GKHGVA 388 (634)
Q Consensus 315 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ 388 (634)
...+.+...+..++..|++-+...... .-+..-++....++...|.+...........+.|-..- ...+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el---~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALEL---ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhH---hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666633 33334444455556666666666655555554432110 011111
Q ss_pred HHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHH
Q 047120 389 LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGLVKE 467 (634)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~ 467 (634)
+..+|.+.++++.++..|.+...+... -....+....+++....+...- +.|... -...-.+.+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 222344445555555555543311000 0111122233333333333222 222221 11122444555666666
Q ss_pred HHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047120 468 GLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIG 545 (634)
Q Consensus 468 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 545 (634)
|+..|.++.+. .+.|...|....-+|.+.|.+..|++-.+.. ...|+ ...|.--..++....+++.|.+.|+++++
T Consensus 377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666665552 1334555666666666666666666555444 33333 22343334444455566666666666666
Q ss_pred cCCCCCchHHHHHHHHhc
Q 047120 546 MDSSNSSSYVLLSNMFAG 563 (634)
Q Consensus 546 ~~p~~~~~~~~l~~~~~~ 563 (634)
.+|.+......+.++...
T Consensus 455 ~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred cCchhHHHHHHHHHHHHH
Confidence 666555555555555543
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.06 E-value=2.7e-08 Score=99.18 Aligned_cols=192 Identities=17% Similarity=0.138 Sum_probs=126.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHHc-----CC-CC-chhHHHHHHHHhHhcCCHHHHHHHHHhccC----------CChh-
Q 047120 354 VLSAIAQLGHIDKGVAIHRYLEKD-----QF-SL-NGKHGVALIDMYSKCGSIENAIKVFEQIED----------GSVD- 415 (634)
Q Consensus 354 ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~- 415 (634)
+...+...+++++|..+|+.+... |- .| -..++..|..+|.+.|++++|...+++..+ +.+.
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 444445555555555555554431 11 11 123445555566666666666555544321 1111
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc----C-ccc
Q 047120 416 HWNAMINGLAIHGLGELAFDLLMEMERL---SIEPD----DITFTGLLNACAHAGLVKEGLLCFELMRRIH----K-LEP 483 (634)
Q Consensus 416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~~~ 483 (634)
.++.++..+...+++++|..++++..+. -..++ ..+++.+...|...|++++|.++++++.... + ..+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 3566677778888888888887765432 12222 2488999999999999999999999887632 1 112
Q ss_pred C-hhHHHHHHHHHhccCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047120 484 E-LQHYGCMVDILGRAGHIEAARNLIEDM--------PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIG 545 (634)
Q Consensus 484 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 545 (634)
. -..++.|...|.+.+++.+|.++|.+. +..|+ ..+|..|...|...|+++.|+++.+++..
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2 334678888999999999999888776 23345 45899999999999999999999998873
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.05 E-value=9.4e-07 Score=89.52 Aligned_cols=256 Identities=13% Similarity=0.078 Sum_probs=155.4
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047120 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD-DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDM 392 (634)
Q Consensus 314 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 392 (634)
++..+...|...|++++|++++++.+.. .|+ ...|..-...+-+.|++++|...++.+.... .-|..+-+-.+..
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy 271 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHH
Confidence 4456677888899999999999998854 566 4577777888899999999999999888765 3466777778888
Q ss_pred hHhcCCHHHHHHHHHhccCCChh----------HH--HHHHHHHHHcCChHHHHHHHHHHHHC--CC---CC--------
Q 047120 393 YSKCGSIENAIKVFEQIEDGSVD----------HW--NAMINGLAIHGLGELAFDLLMEMERL--SI---EP-------- 447 (634)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~~~~~~----------~~--~~li~~~~~~~~~~~A~~~~~~m~~~--g~---~p-------- 447 (634)
+.+.|++++|.+++.....++.. +| .....+|.+.|++..|++.|..+.+. .+ +-
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~R 351 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLR 351 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHh
Confidence 89999999999998877754311 23 34567888999988888776665432 01 11
Q ss_pred --CHHHHHHHHHHHhccCC-------HHHHHHHHHHhHHhcCcccCh-----------hHHHHHHHHH---hccCCHHHH
Q 047120 448 --DDITFTGLLNACAHAGL-------VKEGLLCFELMRRIHKLEPEL-----------QHYGCMVDIL---GRAGHIEAA 504 (634)
Q Consensus 448 --~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~---~~~g~~~~A 504 (634)
+..+|..+++..-+... ...|.+++-.+.......... .--..+..-. .+...-+++
T Consensus 352 K~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~ 431 (517)
T PF12569_consen 352 KMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEA 431 (517)
T ss_pred hccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHH
Confidence 22334444433222111 233444444443311000000 0000000000 111111111
Q ss_pred HHHHH-----------hC----CCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCch
Q 047120 505 RNLIE-----------DM----PMEPNDVIWRTLLSACRN-YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWN 568 (634)
Q Consensus 505 ~~~~~-----------~~----~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 568 (634)
.+.-. +. +.+.|... +...+.+ ..=+++|.++++-+.+..|++..+|..-..+|.+.|++-
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp---~GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~L 508 (517)
T PF12569_consen 432 EKAAKKEPKKQQNKSKKKEKVEPKKKDDDP---LGEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYL 508 (517)
T ss_pred HHHHhhhhhhhhccccccccccCCcCCCCc---cHHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHH
Confidence 11110 00 11112111 1112223 345788999999999999999999999999999999998
Q ss_pred HHHHHHHH
Q 047120 569 DARRVRSM 576 (634)
Q Consensus 569 ~A~~~~~~ 576 (634)
-|.+.+++
T Consensus 509 LaLqaL~k 516 (517)
T PF12569_consen 509 LALQALKK 516 (517)
T ss_pred HHHHHHHh
Confidence 88887764
No 88
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.05 E-value=9e-07 Score=91.44 Aligned_cols=535 Identities=14% Similarity=0.013 Sum_probs=291.8
Q ss_pred HHHHHHHHhCCCCch-hhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHH
Q 047120 32 QIHARMITTGFIKNT-HLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLM 110 (634)
Q Consensus 32 ~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 110 (634)
.++..++...+.|+. .+|..|-+.|....+. ..|.++|+..-+... .+...+-.+...|++..+++.|.++.-..
T Consensus 477 al~ali~alrld~~~apaf~~LG~iYrd~~Dm---~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 477 ALHALIRALRLDVSLAPAFAFLGQIYRDSDDM---KRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 444555555555555 5677777777766666 889999988765543 36788899999999999999998883222
Q ss_pred HHCCCCCC---cchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh-
Q 047120 111 LDNGVSVD---KFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSV- 186 (634)
Q Consensus 111 ~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~- 186 (634)
-+ ..|- ...|...--.+...++...+..-|+...+..+ -|...|..+..+|.++|++..|.++|.+...-++.
T Consensus 553 ~q--ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 553 AQ--KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred hh--hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 22 1111 11122233345577888889888888887653 37778999999999999999999999887653332
Q ss_pred HHHHH--HHHHHhCCChHHHHHHHhhCccCCCCh--------hHHHHHHHHHHhcCC------cHHHHHHHHhhCCC---
Q 047120 187 SYNSM--IDGYVKSGNIESARELFDSMPIRERNL--------ISWNSVLNGYAQLKS------GLQFAWQIFEKMPE--- 247 (634)
Q Consensus 187 ~~~~l--i~~~~~~g~~~~A~~~~~~m~~~~p~~--------~~~~~ll~~~~~~~~------~~~~a~~~~~~~~~--- 247 (634)
.|... .-.-+..|.+.+|++.+........+. .++-.....+.-.|- -++.+++.|.-...
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 33322 223345788888888887766541111 111111111111111 12222222211111
Q ss_pred -CCchHHHHHHHHHH-----------------------hcCCh---H---HHHHHHhhCCC--CChhHHHHHHHHHHH--
Q 047120 248 -RDLISWNSMLHGCV-----------------------KCGKM---D---DAQALFDKMPK--RDVVSWANMIDGYAK-- 293 (634)
Q Consensus 248 -~~~~~~~~l~~~~~-----------------------~~g~~---~---~A~~~~~~~~~--~~~~~~~~l~~~~~~-- 293 (634)
.+...|-.+-++|. ..+.. + -+.+.+-.-.+ .+..+|..|+..|.+
T Consensus 710 ~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f 789 (1238)
T KOG1127|consen 710 QSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYF 789 (1238)
T ss_pred hhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHH
Confidence 11122222111111 01100 0 00000000000 123444444444333
Q ss_pred --cC----ChHHHHHHhhhCC---CCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCCh
Q 047120 294 --LG----RVDIARRLFDEMP---KRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI 364 (634)
Q Consensus 294 --~g----~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 364 (634)
+| +...|...+.... ..+...|+.|.-. ...|++.-|...|-+-... .+-...+|..+.-.+....++
T Consensus 790 ~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s--ep~~~~~W~NlgvL~l~n~d~ 866 (1238)
T KOG1127|consen 790 LLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--EPTCHCQWLNLGVLVLENQDF 866 (1238)
T ss_pred HHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--cccchhheeccceeEEecccH
Confidence 11 2234555555443 2556667766554 4446666666666555422 223445677777677777788
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc--------CCChhHHHHHHHHHHHcCChHHHHH-
Q 047120 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE--------DGSVDHWNAMINGLAIHGLGELAFD- 435 (634)
Q Consensus 365 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~A~~- 435 (634)
+.|...+...+... +.+...+-.........|+.-++..+|..-. .++..-|-.........|+.++-+.
T Consensus 867 E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t 945 (1238)
T KOG1127|consen 867 EHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINT 945 (1238)
T ss_pred HHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHH
Confidence 88888877766542 3334444444444455666666666665411 1233333333333344555443332
Q ss_pred ---------HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHH----HHHHHhccCCHH
Q 047120 436 ---------LLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGC----MVDILGRAGHIE 502 (634)
Q Consensus 436 ---------~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~ 502 (634)
.+++... +.+-+...|...+....+.+.++.|.....+.......+-+...|+. +.+.+...|.++
T Consensus 946 ~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe 1024 (1238)
T KOG1127|consen 946 ARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFE 1024 (1238)
T ss_pred hhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchh
Confidence 2333332 22223557777777777778787777776665443233444555553 344566678888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc---hHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 503 AARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS---SYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 503 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
.|..-+.......|...-..-+.. .-.|+++++.+.|++++.+...+.. ....++......+..+.|...+-+...
T Consensus 1025 ~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1025 SAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 777776665444454444333333 3357888999999998887655444 334445555567777777777655543
No 89
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=2.3e-06 Score=83.70 Aligned_cols=345 Identities=11% Similarity=0.036 Sum_probs=186.4
Q ss_pred HhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHH-HHHcCChHHHHHHhhhC
Q 047120 229 AQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDG-YAKLGRVDIARRLFDEM 307 (634)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~ 307 (634)
.+.+. .++|...++-....|..+...-...+.+.|++++|..+|+.+.+.+...+...+.. +...+-.-.+. +.+..
T Consensus 90 Yrlnk-~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v 167 (652)
T KOG2376|consen 90 YRLNK-LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSV 167 (652)
T ss_pred HHccc-HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhc
Confidence 34455 66666666644444444555556677788888888888888876555444433322 11111111221 34444
Q ss_pred CCCChhhHHH---HHHHHHHcCCchHHHHHHHHHHhc-------CCCC-----CCHh-HHHHHHHHHHccCChHHHHHHH
Q 047120 308 PKRDVVACNA---MMGGYVRNGYSMKALEIFDNMQCE-------LYLH-----PDDA-SLVIVLSAIAQLGHIDKGVAIH 371 (634)
Q Consensus 308 ~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~m~~~-------~~~~-----p~~~-~~~~ll~~~~~~~~~~~a~~~~ 371 (634)
......+|.. ....+...|++.+|+++++....- +... -+.. .-..+.-.+...|+.++|..++
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4333333433 345667789999999999888211 0111 1111 1223444567899999999999
Q ss_pred HHHHHcCCCCch---hHHHHHHHHhHhcCCHH-HHHHHHHhccCC--------------ChhHH-HHHHHHHHHcCChHH
Q 047120 372 RYLEKDQFSLNG---KHGVALIDMYSKCGSIE-NAIKVFEQIEDG--------------SVDHW-NAMINGLAIHGLGEL 432 (634)
Q Consensus 372 ~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~--------------~~~~~-~~li~~~~~~~~~~~ 432 (634)
...++......+ ...|.|+.+-....-++ .++..++..... ..... +.++..|. +..+.
T Consensus 248 ~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q 325 (652)
T KOG2376|consen 248 VDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQ 325 (652)
T ss_pred HHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHH
Confidence 999887633221 22233332221111111 222233222211 11111 22222222 23333
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHH-
Q 047120 433 AFDLLMEMERLSIEPDDITFTGLLNACAH--AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE- 509 (634)
Q Consensus 433 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~- 509 (634)
+.++....- +..|. ..+..++..+.+ ......+..++....+.+. .....+.-.++......|+++.|++++.
T Consensus 326 ~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p-~~s~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 326 VRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHP-EKSKVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred HHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 433333322 12333 234444443322 2356777777777765211 1124456677788899999999999998
Q ss_pred -------hC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC----CCC---CchHHHHHHHHhcCCCchHHHHHH
Q 047120 510 -------DM-PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD----SSN---SSSYVLLSNMFAGLGMWNDARRVR 574 (634)
Q Consensus 510 -------~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----p~~---~~~~~~l~~~~~~~g~~~~A~~~~ 574 (634)
.. .+.-.+.+..++...+.+.++.+.|..++..++.-- +.. ...+..++..-.+.|+-++|..++
T Consensus 402 ~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 402 FLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred HhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 33 223334455566666788888888888887776431 222 224444555556779999999999
Q ss_pred HHHHhCC
Q 047120 575 SMMKERN 581 (634)
Q Consensus 575 ~~~~~~~ 581 (634)
+++.+..
T Consensus 482 eel~k~n 488 (652)
T KOG2376|consen 482 EELVKFN 488 (652)
T ss_pred HHHHHhC
Confidence 9998743
No 90
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=7.3e-06 Score=83.10 Aligned_cols=342 Identities=15% Similarity=0.155 Sum_probs=215.8
Q ss_pred chhhhhHHHHH--hhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHC-C-------
Q 047120 45 NTHLTTKLVAS--FSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDN-G------- 114 (634)
Q Consensus 45 ~~~~~~~li~~--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g------- 114 (634)
|..+-..++.. |..-|+. ..|.+-...++ +-..|..+.+.+.+.++.+-|.--+..|... |
T Consensus 725 d~~TRkaml~FSfyvtiG~M---D~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSM---DAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred CHHHHHhhhceeEEEEeccH---HHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 45566677655 6777988 88877776663 5678999999999999999888777776531 1
Q ss_pred -CCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CChhHHHHHH
Q 047120 115 -VSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI-RDSVSYNSMI 192 (634)
Q Consensus 115 -~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li 192 (634)
-.|+ .+=..+.......|.+++|+.+|++-.+ |..|=..|-..|.+++|.++-+.-.. .=..||-...
T Consensus 796 ~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA 865 (1416)
T KOG3617|consen 796 QQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYA 865 (1416)
T ss_pred HhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHH
Confidence 1222 2222233334578999999999988766 34455667788999999988765332 1234677777
Q ss_pred HHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHH
Q 047120 193 DGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQAL 272 (634)
Q Consensus 193 ~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 272 (634)
.-+-..++.+.|++.|++... |-...+..|.. . +.......+++.++ ..|.-....+-..|+.+.|+.+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~--hafev~rmL~e------~-p~~~e~Yv~~~~d~--~L~~WWgqYlES~GemdaAl~~ 934 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGV--HAFEVFRMLKE------Y-PKQIEQYVRRKRDE--SLYSWWGQYLESVGEMDAALSF 934 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCC--hHHHHHHHHHh------C-hHHHHHHHHhccch--HHHHHHHHHHhcccchHHHHHH
Confidence 777788999999999987654 22222221111 1 44444444554444 3344445555678999999988
Q ss_pred HhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHH
Q 047120 273 FDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLV 352 (634)
Q Consensus 273 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 352 (634)
|.... -|-.++...|-.|+.++|-++-++- .|......+.+.|-..|++.+|+..|.+.+ +|.
T Consensus 935 Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq----------afs 997 (1416)
T KOG3617|consen 935 YSSAK-----DYFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ----------AFS 997 (1416)
T ss_pred HHHhh-----hhhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH----------HHH
Confidence 88653 4666777777788888888776654 355566778888888899999998888775 233
Q ss_pred HHHHHHHc-------------cC--ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc-------
Q 047120 353 IVLSAIAQ-------------LG--HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE------- 410 (634)
Q Consensus 353 ~ll~~~~~-------------~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------- 410 (634)
..|+.|-. ++ +.-.|..+|++. |.. ....+..|-+.|.+.+|+++--+-.
T Consensus 998 nAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen 998 NAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred HHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence 33333322 22 222333344322 211 1234456777777777766532211
Q ss_pred -------CCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047120 411 -------DGSVDHWNAMINGLAIHGLGELAFDLLMEME 441 (634)
Q Consensus 411 -------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 441 (634)
..|+...+.-..-+....++++|..++-..+
T Consensus 1070 Ia~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 2355566666666666777777776665443
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.98 E-value=2.9e-07 Score=79.27 Aligned_cols=191 Identities=12% Similarity=0.019 Sum_probs=88.9
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHH
Q 047120 357 AIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELA 433 (634)
Q Consensus 357 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A 433 (634)
.|...|+...|..-++++++.. +.+..++..+...|.+.|+.+.|.+.|++.. +.+-.+.|....-+|..|++++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 3344444444444444444332 2233334444444444444444444444433 12333444444445555555555
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC
Q 047120 434 FDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM 511 (634)
Q Consensus 434 ~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 511 (634)
...|++....-.-|. ..+|..+.-+..+.|+.+.|...|++..+. .|+ ......+.......|++..|..+++..
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 555555544322222 235555555555555555555555555442 122 333444555555555555555555544
Q ss_pred --CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 047120 512 --PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551 (634)
Q Consensus 512 --~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (634)
...++..+....|..-...|+.+.+-++-..+.+..|.++
T Consensus 200 ~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 200 QQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 2234444444444444555555555555555555555443
No 92
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.1e-05 Score=83.61 Aligned_cols=338 Identities=11% Similarity=0.113 Sum_probs=246.6
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhH-----HHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHH
Q 047120 183 RDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLIS-----WNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSML 257 (634)
Q Consensus 183 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~-----~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 257 (634)
.|...-+.-+.++...+-+.+-+++++++.-. |+.++ -+.++-...+.. .....+..+++..-|.. .+.
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~-~S~Fse~~nLQnLLiLtAikad--~trVm~YI~rLdnyDa~---~ia 1055 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLD-NSVFSENRNLQNLLILTAIKAD--RTRVMEYINRLDNYDAP---DIA 1055 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC-CcccccchhhhhhHHHHHhhcC--hHHHHHHHHHhccCCch---hHH
Confidence 46666677788999999999999999887654 33222 233333333322 55666666666552222 224
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHH
Q 047120 258 HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337 (634)
Q Consensus 258 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 337 (634)
..+...+-+++|..+|++... +....+.|+. ..++++.|.+.-++..+|. .|..+..+-.+.|...+|++-|-+
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~~-n~~A~~VLie---~i~~ldRA~efAe~~n~p~--vWsqlakAQL~~~~v~dAieSyik 1129 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFDM-NVSAIQVLIE---NIGSLDRAYEFAERCNEPA--VWSQLAKAQLQGGLVKDAIESYIK 1129 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhcc-cHHHHHHHHH---HhhhHHHHHHHHHhhCChH--HHHHHHHHHHhcCchHHHHHHHHh
Confidence 566778889999999987532 3334444443 4577888888887776654 689999999999999999988754
Q ss_pred HHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHH
Q 047120 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHW 417 (634)
Q Consensus 338 m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 417 (634)
.. |+..|..++..+.+.|.+++-..++..+++..-.|... +.|+-+|++.+++.+.++++. -|+....
T Consensus 1130 ad-------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i 1197 (1666)
T KOG0985|consen 1130 AD-------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANI 1197 (1666)
T ss_pred cC-------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhH
Confidence 43 56789999999999999999999999888876555544 578899999999988777653 4666666
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc
Q 047120 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497 (634)
Q Consensus 418 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 497 (634)
..+..-|...|.++.|.-+|... ..|..|...+...|++..|...-+++ .+..+|..+..+|..
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVD 1261 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhc
Confidence 77788888888888887777643 35777777888888888887665443 356788888888887
Q ss_pred cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcC
Q 047120 498 AGHIEAARNLIEDMP--MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL 564 (634)
Q Consensus 498 ~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 564 (634)
.+.+.-|.- .| +-....-...|+..|...|-+++-+.+++.++.+..-.-..+..|+-+|.+-
T Consensus 1262 ~~EFrlAQi----CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1262 KEEFRLAQI----CGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred hhhhhHHHh----cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 776654432 23 2233455677889999999999999999999988888888899999988764
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.1e-06 Score=85.13 Aligned_cols=432 Identities=14% Similarity=0.055 Sum_probs=234.1
Q ss_pred HHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcc-hHHHHHHHHhcc
Q 047120 54 ASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKF-SASLVLKACSRL 132 (634)
Q Consensus 54 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~ 132 (634)
++....|++ +.|...|.......+. |.+.|+.=..+|+..|++++|++=-.+-++ +.|+-. .|+....++.-.
T Consensus 10 naa~s~~d~---~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 10 NAAFSSGDF---ETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HhhcccccH---HHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhc
Confidence 445677888 9999999987766654 889999999999999999999887777766 456544 788898899999
Q ss_pred CChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHH-HHHHhhCCCCChhHHHHH-----HHHHHhCCChHHHHH
Q 047120 133 GLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFA-RQLFDKMGIRDSVSYNSM-----IDGYVKSGNIESARE 206 (634)
Q Consensus 133 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~ 206 (634)
|++++|+..|..-++.. +.|...++.+..++ ..+.+ .+.|. +...|..+ -+.+...-.+..-++
T Consensus 84 g~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred ccHHHHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 99999999998887764 33556677777766 11111 11111 11222211 111111111111111
Q ss_pred HHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHH-hcCChH----HHHHHHhhC-----
Q 047120 207 LFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCV-KCGKMD----DAQALFDKM----- 276 (634)
Q Consensus 207 ~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~----~A~~~~~~~----- 276 (634)
.++.- |.. +..+..... +..+...+.....+ .+...-.... ....+. ........+
T Consensus 154 ~~~~~----p~~------l~~~l~d~r-~m~a~~~l~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~ 219 (539)
T KOG0548|consen 154 IIQKN----PTS------LKLYLNDPR-LMKADGQLKGVDEL---LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERR 219 (539)
T ss_pred HhhcC----cHh------hhcccccHH-HHHHHHHHhcCccc---cccccccccCCCCCCcccccCCCCCccchhHHHHH
Confidence 11111 111 000000000 11111111110000 0000000000 000000 000000000
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHhhhCCC--CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCC-CCCH----h
Q 047120 277 PKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK--RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYL-HPDD----A 349 (634)
Q Consensus 277 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~----~ 349 (634)
.+.-..-...+.++..+..+++.|.+-+....+ .+..-++....+|...|.+.+.+..-....+.++. ..+. .
T Consensus 220 ~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak 299 (539)
T KOG0548|consen 220 VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAK 299 (539)
T ss_pred HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHH
Confidence 001122345566777777778888877776654 33444566667777777777777666665544211 0111 1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc--CCCh-hHHHHHHHHHHH
Q 047120 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE--DGSV-DHWNAMINGLAI 426 (634)
Q Consensus 350 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~ 426 (634)
.+..+..++.+.++++.++..|.......-.|+ ...+....+++....+... .|.. .-...-...+.+
T Consensus 300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk 370 (539)
T KOG0548|consen 300 ALARLGNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK 370 (539)
T ss_pred HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh
Confidence 222233355566777888888877655433322 2233344555555544433 2211 112222566778
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHH
Q 047120 427 HGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAA 504 (634)
Q Consensus 427 ~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 504 (634)
.|++..|+..|.++++.. |+ ...|....-+|.+.|.+..|++-.+...+. .|+ ...|..=..++....++++|
T Consensus 371 ~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL---~p~~~kgy~RKg~al~~mk~ydkA 445 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL---DPNFIKAYLRKGAALRAMKEYDKA 445 (539)
T ss_pred ccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888763 54 568888888888888888888877777663 333 33344445555566678888
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHh
Q 047120 505 RNLIEDM-PMEPNDVIWRTLLSACRN 529 (634)
Q Consensus 505 ~~~~~~~-~~~p~~~~~~~l~~~~~~ 529 (634)
++.|++. ...|+..-+..-+.-|..
T Consensus 446 leay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 446 LEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 8888876 556665555444444444
No 94
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.95 E-value=1.1e-06 Score=89.02 Aligned_cols=282 Identities=13% Similarity=0.070 Sum_probs=147.4
Q ss_pred HHHHcCChHHHHHHhhhCCC--CCh-hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHH----c--
Q 047120 290 GYAKLGRVDIARRLFDEMPK--RDV-VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA----Q-- 360 (634)
Q Consensus 290 ~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~----~-- 360 (634)
.+...|++++|++.++.-.. .|. .........+.+.|+.++|..+|+.+... .|+...|...+..+. .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHhhhcccc
Confidence 34455666666666555433 222 23344455566666666666666666633 455554444444333 1
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHH-HHHHHHhccCCCh-hHHHHHHHHHHHcCChHHHHHHHH
Q 047120 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIEN-AIKVFEQIEDGSV-DHWNAMINGLAIHGLGELAFDLLM 438 (634)
Q Consensus 361 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~ 438 (634)
..+.+....+++.+...- |.......+.-.+....++.. +..++......++ ..++.+-..|.......-...++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 123445555555554432 111111111111111112221 2222233333333 234444444443333333333443
Q ss_pred HHHHC----C----------CCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCH
Q 047120 439 EMERL----S----------IEPDD--ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHI 501 (634)
Q Consensus 439 ~m~~~----g----------~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 501 (634)
..... + -.|+. .++..+...|...|++++|+++.+.+... .|+ ++.|..-++.|.+.|++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCH
Confidence 33221 1 12333 24455666777888888888888887763 344 66777778888888888
Q ss_pred HHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCC-CCCc------hH--HHHHHHHhcCCCchHH
Q 047120 502 EAARNLIEDM-PMEPNDV-IWRTLLSACRNYENLNVGEPVAKHLIGMDS-SNSS------SY--VLLSNMFAGLGMWNDA 570 (634)
Q Consensus 502 ~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-~~~~------~~--~~l~~~~~~~g~~~~A 570 (634)
++|.+.++.+ .+.+... .-+-.+..+.+.|++++|+..+..-.+.+. +... .| ...+.+|.+.|++..|
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 8888888877 3444333 444455566788888888877766554442 1111 23 3456778888888888
Q ss_pred HHHHHHHHh
Q 047120 571 RRVRSMMKE 579 (634)
Q Consensus 571 ~~~~~~~~~ 579 (634)
++.+..+.+
T Consensus 325 Lk~~~~v~k 333 (517)
T PF12569_consen 325 LKRFHAVLK 333 (517)
T ss_pred HHHHHHHHH
Confidence 877766644
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=5.3e-08 Score=94.72 Aligned_cols=215 Identities=13% Similarity=0.108 Sum_probs=151.8
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHcCChHHHHHH
Q 047120 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG---SVDHWNAMINGLAIHGLGELAFDL 436 (634)
Q Consensus 360 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~ 436 (634)
+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..++++.+- +....-.|.-.|...|.-..|++.
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4444555555555544432 334455555555555555555566655555432 444556666677777777778887
Q ss_pred HHHHHHCCCCCCHHHHHHHH-----------HHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHH
Q 047120 437 LMEMERLSIEPDDITFTGLL-----------NACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR 505 (634)
Q Consensus 437 ~~~m~~~g~~p~~~~~~~ll-----------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 505 (634)
|+..+... |. |..+. ..+..........++|-.+....+..+|..++..|.-.|.-.|++++|+
T Consensus 376 L~~Wi~~~--p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 376 LDKWIRNK--PK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHhC--cc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 77775532 11 00000 1122223344555566555554666688889999999999999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 506 NLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 506 ~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
+.|+.+ .++|+ ..+|+-|...+....+.++|+..|.+++++.|.-....+.|+-.|...|.+++|.+.|-.+...
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999988 66665 6699999999999999999999999999999999999999999999999999999999777554
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.90 E-value=2.8e-08 Score=93.50 Aligned_cols=79 Identities=15% Similarity=0.144 Sum_probs=35.4
Q ss_pred CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCc-hHHHHHHHH
Q 047120 500 HIEAARNLIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMW-NDARRVRSM 576 (634)
Q Consensus 500 ~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 576 (634)
.+.+|..+|+++ ...+++.+.+.+..++...|++++|+.+++++++.+|.++++...++-+....|+. +.+.+++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 344444444444 22334444444444445555555555555555555555555555555444444444 334444444
Q ss_pred HH
Q 047120 577 MK 578 (634)
Q Consensus 577 ~~ 578 (634)
+.
T Consensus 262 L~ 263 (290)
T PF04733_consen 262 LK 263 (290)
T ss_dssp CH
T ss_pred HH
Confidence 43
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.89 E-value=4.2e-06 Score=83.43 Aligned_cols=294 Identities=11% Similarity=-0.050 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHhhhCCC---CCh---hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHh-HHHHHH
Q 047120 283 SWANMIDGYAKLGRVDIARRLFDEMPK---RDV---VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA-SLVIVL 355 (634)
Q Consensus 283 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~ll 355 (634)
.+..+...+...|+.+.+.+.+....+ .+. .........+...|++++|.+.+++.... .|+.. .+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~-~ 83 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD---YPRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHH-h
Confidence 344444555555655555444443321 111 12222334556678888888888887754 44432 3331 1
Q ss_pred HHHH----ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcC
Q 047120 356 SAIA----QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHG 428 (634)
Q Consensus 356 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~ 428 (634)
..+. ..+..+.+.+.+.. .....+........+...+...|++++|...+++.. +.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 1222 23444444444433 111112223444556677888888999988888776 234567778888888899
Q ss_pred ChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHH-H--HHHHHHhccCCHH
Q 047120 429 LGELAFDLLMEMERLSI-EPDD--ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY-G--CMVDILGRAGHIE 502 (634)
Q Consensus 429 ~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~ 502 (634)
++++|...+++...... .|+. ..|..+...+...|++++|..+++.+.......+..... + .++..+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 99999999888776422 1222 245567778888999999999998875421111111111 1 2233334444322
Q ss_pred HHHHH---HHhC-CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC---------CCchHHHHHHHHhcCCC
Q 047120 503 AARNL---IEDM-PMEPN---DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS---------NSSSYVLLSNMFAGLGM 566 (634)
Q Consensus 503 ~A~~~---~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~ 566 (634)
.+.+. .... +..|. .........++...|+.+.|...++.+...... ........+.++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 22222 1111 11111 122234555677889999999999887654321 23344566677889999
Q ss_pred chHHHHHHHHHHhCC
Q 047120 567 WNDARRVRSMMKERN 581 (634)
Q Consensus 567 ~~~A~~~~~~~~~~~ 581 (634)
+++|.+.+.......
T Consensus 323 ~~~A~~~L~~al~~a 337 (355)
T cd05804 323 YATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887654
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.88 E-value=2.5e-06 Score=77.71 Aligned_cols=293 Identities=16% Similarity=0.150 Sum_probs=220.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHH---HHHHHcCCchHHHHHHHHHHhcCCCCCCHhH-HHHHHHHH
Q 047120 283 SWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMM---GGYVRNGYSMKALEIFDNMQCELYLHPDDAS-LVIVLSAI 358 (634)
Q Consensus 283 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~ 358 (634)
-..-+...+...|++.+|+.-|....+-|+..|.++. ..|...|+...|+.=+.+.. .++||-.. -..-...+
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVl---elKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVL---ELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHH---hcCccHHHHHHHhchhh
Confidence 3445777888899999999999999988887776654 47888999999999999998 46898543 22234456
Q ss_pred HccCChHHHHHHHHHHHHcCCCCc--hhHH------------HHHHHHhHhcCCHHHHHHHHHhccCC---ChhHHHHHH
Q 047120 359 AQLGHIDKGVAIHRYLEKDQFSLN--GKHG------------VALIDMYSKCGSIENAIKVFEQIEDG---SVDHWNAMI 421 (634)
Q Consensus 359 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~------------~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li 421 (634)
.+.|.++.|..=|+.+++.....+ ...+ ...+..+...|+...|+.....+.+- |...|..-.
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Ra 196 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARA 196 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHH
Confidence 799999999999999987643211 1111 12234456678999999998888743 666778888
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhH----HHHH------
Q 047120 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH----YGCM------ 491 (634)
Q Consensus 422 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~l------ 491 (634)
.+|...|++..|+.=++...+.. .-+..++.-+-..+...|+.+.++...++..+ +.||... |..|
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHHHH
Confidence 99999999999998888776642 33455666777788889999999988888876 3666433 2222
Q ss_pred ---HHHHhccCCHHHHHHHHHhC-CCCCCH--H---HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120 492 ---VDILGRAGHIEAARNLIEDM-PMEPND--V---IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA 562 (634)
Q Consensus 492 ---~~~~~~~g~~~~A~~~~~~~-~~~p~~--~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (634)
+....+.++|.++++-.+.. ...|.. + .+..+-..+...|++.+|++...++++.+|++..++..-+.+|.
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYL 352 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 12234667777777777665 445552 2 33444455677999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHhCCC
Q 047120 563 GLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~~ 582 (634)
....+++|+.-++++.+.+.
T Consensus 353 ~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 353 GDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred hhHHHHHHHHHHHHHHhcCc
Confidence 99999999999999987654
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=4.1e-05 Score=77.92 Aligned_cols=254 Identities=13% Similarity=0.102 Sum_probs=114.7
Q ss_pred CcchHHHHHH--HHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC------------C
Q 047120 118 DKFSASLVLK--ACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI------------R 183 (634)
Q Consensus 118 ~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~ 183 (634)
|..|-..++. .|...|+.+.|.+-.+.+. +..+|..+.++|.+..++|-|.-.+-.|.. .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3334444442 2445566666665554432 234566666666666666666555555432 0
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCC-CchHHHHHHHHHHh
Q 047120 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER-DLISWNSMLHGCVK 262 (634)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~ 262 (634)
+..+-.-..-...+.|.+++|..+|++-++ |..+=..|-..|. +++|.++-+.-..- =..||.....-+-.
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR-------~DLlNKlyQs~g~-w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKR-------YDLLNKLYQSQGM-WSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHhccc-HHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 101111112222344555555555555443 1111112222222 55555444333221 11234444444444
Q ss_pred cCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcC
Q 047120 263 CGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342 (634)
Q Consensus 263 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 342 (634)
.++.+.|++.|++...+--.++..|.. ++.....+.+++.+ ...|.-...-+-..|+.+.|+.+|.....
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e------~p~~~e~Yv~~~~d--~~L~~WWgqYlES~GemdaAl~~Y~~A~D-- 940 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKE------YPKQIEQYVRRKRD--ESLYSWWGQYLESVGEMDAALSFYSSAKD-- 940 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHh------ChHHHHHHHHhccc--hHHHHHHHHHHhcccchHHHHHHHHHhhh--
Confidence 555555555555443222222222111 11122222222222 23333334444455666666666665542
Q ss_pred CCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhc
Q 047120 343 YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409 (634)
Q Consensus 343 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 409 (634)
|-.+++..+-.|+.++|-++-++ .-|......|...|...|++.+|..+|.+.
T Consensus 941 --------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 --------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred --------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 33444455556666666655432 224455556666676677777776666554
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.82 E-value=2.2e-07 Score=87.53 Aligned_cols=226 Identities=16% Similarity=0.170 Sum_probs=134.3
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CchhHHHHHHHHh
Q 047120 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS-LNGKHGVALIDMY 393 (634)
Q Consensus 315 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 393 (634)
...+.+++...|+++.++ .++... -.|.......+...+...++.+.+..-++........ .+..+......++
T Consensus 38 ~~~~~Rs~iAlg~~~~vl---~ei~~~--~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVL---SEIKKS--SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHTT-HHHHH---HHS-TT--SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHH---HHhccC--CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 334455666666655433 222221 1444444444443333333444443333332222222 2333333334556
Q ss_pred HhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hccCCHHHHH
Q 047120 394 SKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC----AHAGLVKEGL 469 (634)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~g~~~~a~ 469 (634)
...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++ ...+.+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHH
Confidence 6678888888877765 45566667778888888999999999888864 334 3333344333 2334688999
Q ss_pred HHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-hHHHHHHHHHhcc
Q 047120 470 LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENL-NVGEPVAKHLIGM 546 (634)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 546 (634)
.+|+++.. ...++..+.+.+..++...|++++|.+++++. ...| ++.++..++......|+. +.+.+.+.++...
T Consensus 188 y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999876 34567778888888899999999999988876 3334 455777777777777777 6677888888888
Q ss_pred CCCCCc
Q 047120 547 DSSNSS 552 (634)
Q Consensus 547 ~p~~~~ 552 (634)
.|..|.
T Consensus 266 ~p~h~~ 271 (290)
T PF04733_consen 266 NPNHPL 271 (290)
T ss_dssp TTTSHH
T ss_pred CCCChH
Confidence 887553
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.81 E-value=3.6e-07 Score=84.96 Aligned_cols=179 Identities=12% Similarity=0.010 Sum_probs=112.7
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhccC--C-Ch---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HH
Q 047120 382 NGKHGVALIDMYSKCGSIENAIKVFEQIED--G-SV---DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD----IT 451 (634)
Q Consensus 382 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~ 451 (634)
....+..++..+...|++++|...|+++.. | ++ ..+..+..++...|++++|...++++.+. .|+. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 445556666667777777777777776652 2 21 34566667777777777777777777654 3321 13
Q ss_pred HHHHHHHHhcc--------CCHHHHHHHHHHhHHhcCcccCh-hHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHH
Q 047120 452 FTGLLNACAHA--------GLVKEGLLCFELMRRIHKLEPEL-QHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRT 522 (634)
Q Consensus 452 ~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 522 (634)
+..+..++... |++++|.+.++.+.+. .|+. ..+..+..... ..... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHH
Confidence 44444444433 5666677777666653 2332 12211111100 00000 001124
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCC---chHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 523 LLSACRNYENLNVGEPVAKHLIGMDSSNS---SSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 523 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
+...+.+.|++++|...++++++..|.+| ..+..++.++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55668899999999999999999987654 68999999999999999999999988654
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=1.4e-05 Score=71.44 Aligned_cols=285 Identities=13% Similarity=0.026 Sum_probs=139.5
Q ss_pred ccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCC-CcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHH-HHH
Q 047120 85 FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV-DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNC-LIS 162 (634)
Q Consensus 85 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li~ 162 (634)
.-+++++..+.+..++..|++++..-.++. | +....+.+.-+|....++..|-.+++++-..- |...-|.. -..
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQ 86 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHH
Confidence 335555555566666666666665555432 3 33445555555556666666666666655432 22222211 123
Q ss_pred HHHhcCCHHHHHHHHhhCCCC-ChhHHHHHHH--HHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHH
Q 047120 163 LYVRCGYLEFARQLFDKMGIR-DSVSYNSMID--GYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAW 239 (634)
Q Consensus 163 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~ 239 (634)
.+-+.+.+..|+.+...|... +...-..-+. ..-..++ +..+.
T Consensus 87 SLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~D----------------------------------l~g~r 132 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGD----------------------------------LPGSR 132 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhccccc----------------------------------CcchH
Confidence 333445555555555544432 1111111111 1112333 44444
Q ss_pred HHHhhCCC-CCchHHHHHHHHHHhcCChHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHhhhCCC-----
Q 047120 240 QIFEKMPE-RDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMPK----- 309 (634)
Q Consensus 240 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----- 309 (634)
.++++.+. .+..+.+...-...+.|+++.|.+-|+...+ .....|+..+. ..+.|+.+.|++...++.+
T Consensus 133 sLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 133 SLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred HHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhc
Confidence 44444442 3333333333334455555555555555543 12233333332 2334555555555444432
Q ss_pred ------------CCh---------------hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccC
Q 047120 310 ------------RDV---------------VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLG 362 (634)
Q Consensus 310 ------------~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 362 (634)
+|+ ..+|.-...+.+.|+++.|.+.+..|..+..-..|++|...+.-. ...+
T Consensus 212 HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~ 290 (459)
T KOG4340|consen 212 HPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDA 290 (459)
T ss_pred CCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccC
Confidence 111 123333444566777787877777776544445566666554322 1233
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc
Q 047120 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE 410 (634)
Q Consensus 363 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (634)
++....+-+..+.+.+ +....++..++-.||+..-++.|-.++-+-.
T Consensus 291 ~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 291 RPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred CccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 4444455555555543 3455777777778888777777777765543
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.77 E-value=6e-07 Score=79.79 Aligned_cols=149 Identities=7% Similarity=0.029 Sum_probs=110.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC
Q 047120 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500 (634)
Q Consensus 421 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 500 (634)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+. -+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence 3567777777776444332221 11 0122356677777777776652 24567788899999999999
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHH-HhcCC--hhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHH
Q 047120 501 IEAARNLIEDM-PMEPN-DVIWRTLLSAC-RNYEN--LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRS 575 (634)
Q Consensus 501 ~~~A~~~~~~~-~~~p~-~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 575 (634)
+++|...+++. ...|+ ...+..+..++ ...|+ .++|.++++++++.+|.++.++..++..+.+.|++++|+..++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999887 45554 66777777764 66676 5899999999999999999999999999999999999999999
Q ss_pred HHHhCCCc
Q 047120 576 MMKERNLK 583 (634)
Q Consensus 576 ~~~~~~~~ 583 (634)
++.+...+
T Consensus 169 ~aL~l~~~ 176 (198)
T PRK10370 169 KVLDLNSP 176 (198)
T ss_pred HHHhhCCC
Confidence 99776553
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.74 E-value=4.4e-05 Score=86.43 Aligned_cols=322 Identities=13% Similarity=0.033 Sum_probs=194.9
Q ss_pred HHHhcCChHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHhhhCCC----C----C--h--hhHHHHHHHH
Q 047120 259 GCVKCGKMDDAQALFDKMPK----RDVVSWANMIDGYAKLGRVDIARRLFDEMPK----R----D--V--VACNAMMGGY 322 (634)
Q Consensus 259 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----~--~--~~~~~l~~~~ 322 (634)
.....|+++.+..+++.+.. .+..........+...|+++++...+....+ . + . .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456777777777766631 2222333444455667888887777765421 1 1 1 1122233455
Q ss_pred HHcCCchHHHHHHHHHHhcCCCCCCH----hHHHHHHHHHHccCChHHHHHHHHHHHHc----CCC-CchhHHHHHHHHh
Q 047120 323 VRNGYSMKALEIFDNMQCELYLHPDD----ASLVIVLSAIAQLGHIDKGVAIHRYLEKD----QFS-LNGKHGVALIDMY 393 (634)
Q Consensus 323 ~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~ 393 (634)
...|++++|...+++...... ..+. .....+...+...|+++.|...+...... |.. ........+...+
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 463 INDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 678888999888888764311 1111 23344555567788999888888777642 111 1123445566777
Q ss_pred HhcCCHHHHHHHHHhccC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCC--HHHHHHHHHH
Q 047120 394 SKCGSIENAIKVFEQIED-------G----SVDHWNAMINGLAIHGLGELAFDLLMEMERLS--IEPD--DITFTGLLNA 458 (634)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p~--~~~~~~ll~~ 458 (634)
...|++++|...+++... + ....+..+...+...|++++|...+++..... ..+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 888999988888776531 1 11234455566777799999988888765421 1122 2345556667
Q ss_pred HhccCCHHHHHHHHHHhHHhcCcccChhHH-----HHHHHHHhccCCHHHHHHHHHhCCC-C-CCHH----HHHHHHHHH
Q 047120 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHY-----GCMVDILGRAGHIEAARNLIEDMPM-E-PNDV----IWRTLLSAC 527 (634)
Q Consensus 459 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~----~~~~l~~~~ 527 (634)
....|++++|.+.++.+............+ ...+..+...|+.+.|.+.+..... . .... .+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 778899999988888875421111111111 1122444568888998888876621 1 1111 134556667
Q ss_pred HhcCChhHHHHHHHHHhccCCC------CCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120 528 RNYENLNVGEPVAKHLIGMDSS------NSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
...|++++|...++++++.... ...++..++.++.+.|+.++|...+.++.+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8889999999999988775321 12356677888889999999999998887654
No 105
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.70 E-value=1.8e-05 Score=82.28 Aligned_cols=454 Identities=13% Similarity=0.047 Sum_probs=221.9
Q ss_pred cchHHHHHHHHHHCCCCCCc-chHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 047120 100 PKEALVMFCLMLDNGVSVDK-FSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD 178 (634)
Q Consensus 100 ~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 178 (634)
...|+..|-+..+. .|+- ..|..+...|+...+..+|.+.|+.+.+.. ..+...+......|++..+++.|..+.-
T Consensus 474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 44444444444431 1221 245556666665556666666666666543 2244556666667777777777666643
Q ss_pred hCCCCC-----hhHHHHHHHHHHhCCChHHHHHHHhhCccCCC-ChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCch-
Q 047120 179 KMGIRD-----SVSYNSMIDGYVKSGNIESARELFDSMPIRER-NLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI- 251 (634)
Q Consensus 179 ~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~- 251 (634)
...+.+ ...|-...-.|.+.++...|+.-|+...+..| |...|..+..+|.+.|. ...|.++|.+....++.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr-y~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR-YSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc-eehHHHhhhhhHhcCcHh
Confidence 332221 11233333445566666666666666665533 44566666677777666 67777777665553222
Q ss_pred HHHHH--HHHHHhcCChHHHHHHHhhCCC----------CChhHHHHHHHHHHHcCChHHHHHHhhhCCC----------
Q 047120 252 SWNSM--LHGCVKCGKMDDAQALFDKMPK----------RDVVSWANMIDGYAKLGRVDIARRLFDEMPK---------- 309 (634)
Q Consensus 252 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 309 (634)
.|... .-.-+..|.+.+|+..+..+.. .-..++-.+...+...|-..+|..+++...+
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 12211 1223455666666666665542 0111121111122222222222222221111
Q ss_pred -CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCCh---H---HHHHHHHHHHHcCCCCc
Q 047120 310 -RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHI---D---KGVAIHRYLEKDQFSLN 382 (634)
Q Consensus 310 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~ 382 (634)
.+...|-.+.. |..+|-+.. . . .|+......+..-....+.. + .+.+.+-. ...+..+
T Consensus 710 ~~~~~~Wi~asd----------ac~~f~q~e-~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~~ 774 (1238)
T KOG1127|consen 710 QSDRLQWIVASD----------ACYIFSQEE-P-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAIH 774 (1238)
T ss_pred hhhHHHHHHHhH----------HHHHHHHhc-c-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhhc
Confidence 11112222211 111221111 0 1 22222222222212222211 1 01111110 1111222
Q ss_pred hhHHHHHHHHhHh----cC----CHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HH
Q 047120 383 GKHGVALIDMYSK----CG----SIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DI 450 (634)
Q Consensus 383 ~~~~~~l~~~~~~----~~----~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~ 450 (634)
+..|..|+.-|.+ ++ +...|+..+.+.. ..+...||.|.-. ...|++.-|...|-+-... .|. ..
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s--ep~~~~ 851 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--EPTCHC 851 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--cccchh
Confidence 3344444333322 11 2234555555544 3466677776655 5556677777666665543 443 45
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-------CCCCCHHHHHHH
Q 047120 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-------PMEPNDVIWRTL 523 (634)
Q Consensus 451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l 523 (634)
+|..+.-.+.+..+++.|...|...+.. .+.+...|..........|+.-++..+|..- +--|+...|.+.
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~ 929 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCA 929 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHH
Confidence 7777777788888888888888887652 1223444544444455677777777777642 223444444444
Q ss_pred HHHHHhcCChhHHHHH----------HHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHH
Q 047120 524 LSACRNYENLNVGEPV----------AKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577 (634)
Q Consensus 524 ~~~~~~~g~~~~a~~~----------~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 577 (634)
.......|+.++-+.. +++.+...|+...+|...+..+.+.+.+.+|.+...+.
T Consensus 930 te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 930 TEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4444555555554443 33444556777777888888887777777777766665
No 106
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.67 E-value=6.7e-05 Score=74.77 Aligned_cols=266 Identities=15% Similarity=0.069 Sum_probs=171.8
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHH---
Q 047120 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASL-VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVA--- 388 (634)
Q Consensus 313 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 388 (634)
..|..+...+...|+.+.+...+..........++.... ......+...|+++.|..+++.+.+.. +.+...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence 456667777778888888877777766442223333222 222334567899999999999988763 334444432
Q ss_pred HHHHhHhcCCHHHHHHHHHhccCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC
Q 047120 389 LIDMYSKCGSIENAIKVFEQIEDGS---VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGL 464 (634)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 464 (634)
........+..+.+.+.+......+ ......+...+...|++++|...+++..+. .|+ ...+..+...+...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCC
Confidence 2222223456666666666533322 234455667889999999999999999986 454 5678888899999999
Q ss_pred HHHHHHHHHHhHHhcCcccCh--hHHHHHHHHHhccCCHHHHHHHHHhC-CCCC--C-HHHH-H--HHHHHHHhcCChhH
Q 047120 465 VKEGLLCFELMRRIHKLEPEL--QHYGCMVDILGRAGHIEAARNLIEDM-PMEP--N-DVIW-R--TLLSACRNYENLNV 535 (634)
Q Consensus 465 ~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~-~~~~-~--~l~~~~~~~g~~~~ 535 (634)
+++|..+++.........|+. ..|..+...+...|++++|..++++. ...| . .... + .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999987632222332 34557888999999999999999986 2233 2 1111 1 23333445565555
Q ss_pred HHHH---HHHHhccCCCC--CchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120 536 GEPV---AKHLIGMDSSN--SSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 536 a~~~---~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
+.++ ........|.. +......+.++...|+.++|...++.+....
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5444 22211111221 1222356777889999999999999986644
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.64 E-value=5.7e-07 Score=75.57 Aligned_cols=91 Identities=11% Similarity=-0.054 Sum_probs=53.0
Q ss_pred HHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCc
Q 047120 490 CMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMW 567 (634)
Q Consensus 490 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 567 (634)
.+...+...|++++|...|+.+ ...| +...|..+..++...|++++|...|+++++++|.++..+..++.++...|++
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 4455555666666666666554 3333 3445555555566666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHHhC
Q 047120 568 NDARRVRSMMKER 580 (634)
Q Consensus 568 ~~A~~~~~~~~~~ 580 (634)
++|+..+++..+.
T Consensus 109 ~eAi~~~~~Al~~ 121 (144)
T PRK15359 109 GLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666655443
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.61 E-value=4.5e-06 Score=89.44 Aligned_cols=200 Identities=16% Similarity=0.108 Sum_probs=159.3
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHHhccCC--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 047120 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG--------SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDIT 451 (634)
Q Consensus 380 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 451 (634)
+.+...|-..|......++.++|+++++++... -...|.++++.-...|.-+...++|+++.+. .-.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 344566777888888888888888888877521 3347888888888888888888999998874 212346
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 047120 452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN---DVIWRTLLSAC 527 (634)
Q Consensus 452 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~ 527 (634)
|..|...|.+.+.+++|.++++.|.++.+ -....|...++.+.++.+-+.|..+++++ ..-|. .......+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78888899999999999999999998665 45667888899999999999999998876 32333 33445555556
Q ss_pred HhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCc
Q 047120 528 RNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583 (634)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (634)
.+.|+.+++..+|+..+.-.|...+.|..++++-.+.|+.+.++.+|+++...++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 78899999999999999999999999999999999999999999999999887764
No 109
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=3.6e-06 Score=82.34 Aligned_cols=246 Identities=14% Similarity=0.126 Sum_probs=153.1
Q ss_pred HHHHcCCchHHHHHHHHHHhcCCCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCH
Q 047120 321 GYVRNGYSMKALEIFDNMQCELYLHP-DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSI 399 (634)
Q Consensus 321 ~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 399 (634)
-+.+.|+..+|.-.|+....+ .| +...|..|.......++-..|+..+.+..+.. +.+......|.-.|...|.-
T Consensus 294 ~lm~nG~L~~A~LafEAAVkq---dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQ---DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhh---ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 344555555555555555533 33 23455555555555555555555555555543 23445555555555555555
Q ss_pred HHHHHHHHhccCCChh-HHHHHH---------HHHHHcCChHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 047120 400 ENAIKVFEQIEDGSVD-HWNAMI---------NGLAIHGLGELAFDLLMEM-ERLSIEPDDITFTGLLNACAHAGLVKEG 468 (634)
Q Consensus 400 ~~A~~~~~~~~~~~~~-~~~~li---------~~~~~~~~~~~A~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~g~~~~a 468 (634)
..|...+++.....+. .|.... ..+..........++|-++ ...+..+|+.....|.-.|--.|++++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 5566555544211000 000000 0111111233344444444 4445446777777777778889999999
Q ss_pred HHHHHHhHHhcCccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047120 469 LLCFELMRRIHKLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIG 545 (634)
Q Consensus 469 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 545 (634)
+..|+.+... +| |..+||.|.-.++...+.++|+..|+++ .++|. +.+...|.-.|...|.+++|.+.|-.++.
T Consensus 450 iDcf~~AL~v---~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQV---KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhc---CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999763 45 4667999999999999999999999998 78888 45777888899999999999999999987
Q ss_pred cCCC-----C-----CchHHHHHHHHhcCCCchHHHHH
Q 047120 546 MDSS-----N-----SSSYVLLSNMFAGLGMWNDARRV 573 (634)
Q Consensus 546 ~~p~-----~-----~~~~~~l~~~~~~~g~~~~A~~~ 573 (634)
+.+. . ..+|..|-.++.-.++.|-+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 7543 1 13666666666666666644433
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.60 E-value=1.6e-06 Score=72.80 Aligned_cols=122 Identities=10% Similarity=0.010 Sum_probs=96.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CC
Q 047120 435 DLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PM 513 (634)
Q Consensus 435 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 513 (634)
.++++..+. .|+. +..+...+...|++++|...|+.+... -+.+...|..+..++.+.|++++|...|+++ ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 445555543 4443 455677788899999999999988762 2346777888999999999999999999987 44
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120 514 EP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA 562 (634)
Q Consensus 514 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (634)
.| +...+..+..++...|++++|+..++++++..|.++..+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 44 57788888889999999999999999999999999999988877764
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.59 E-value=4e-06 Score=88.39 Aligned_cols=158 Identities=10% Similarity=-0.014 Sum_probs=116.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHH
Q 047120 413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD-ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491 (634)
Q Consensus 413 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 491 (634)
++..+..|.....+.|.+++|..+++...+. .|+. .....+...+.+.+++++|+...+..... -+.+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 5777888888888888888888888888874 7774 46777788888888888888888888762 23345667778
Q ss_pred HHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchH
Q 047120 492 VDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWND 569 (634)
Q Consensus 492 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 569 (634)
..++.+.|++++|.++|+++ ...|+ ..++..+..++...|+.++|...|+++++...+-...|+.+. ++...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~ 234 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNA 234 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHH
Confidence 88888888888888888887 22344 678888888888888888888888888888765555544433 23334
Q ss_pred HHHHHHHHHhC
Q 047120 570 ARRVRSMMKER 580 (634)
Q Consensus 570 A~~~~~~~~~~ 580 (634)
-..+++++.-.
T Consensus 235 ~~~~~~~~~~~ 245 (694)
T PRK15179 235 DLAALRRLGVE 245 (694)
T ss_pred HHHHHHHcCcc
Confidence 45556665433
No 112
>PLN02789 farnesyltranstransferase
Probab=98.53 E-value=5.1e-05 Score=72.64 Aligned_cols=176 Identities=13% Similarity=0.099 Sum_probs=106.1
Q ss_pred HHHHHHHHHhccC---CChhHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHH
Q 047120 399 IENAIKVFEQIED---GSVDHWNAMINGLAIHGLG--ELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCF 472 (634)
Q Consensus 399 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~--~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 472 (634)
+++++..++++.+ .+..+|+.-...+.+.|+. ++++.+++++.+. .|. ..+|.....++...|+++++++.+
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4455555544432 2333444433334444432 5566677666654 343 456776666777777777777777
Q ss_pred HHhHHhcCcccChhHHHHHHHHHhcc---CCH----HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CChhHHHHH
Q 047120 473 ELMRRIHKLEPELQHYGCMVDILGRA---GHI----EAARNLIEDM-PMEP-NDVIWRTLLSACRNY----ENLNVGEPV 539 (634)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~~~a~~~ 539 (634)
+.+.+. . ..+...|+.....+.+. |.. ++++++..++ ...| |...|+.+...+... +...+|...
T Consensus 166 ~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 777662 1 23344555544444333 222 4566666444 3344 466787777777663 445678888
Q ss_pred HHHHhccCCCCCchHHHHHHHHhcCC------------------CchHHHHHHHHHH
Q 047120 540 AKHLIGMDSSNSSSYVLLSNMFAGLG------------------MWNDARRVRSMMK 578 (634)
Q Consensus 540 ~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~ 578 (634)
+.+++..+|.++.+...|+++|.... ..++|.++++.+.
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 88888888888889999999998632 2356777777773
No 113
>PF12854 PPR_1: PPR repeat
Probab=98.53 E-value=1.5e-07 Score=55.97 Aligned_cols=33 Identities=33% Similarity=0.483 Sum_probs=23.0
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 047120 149 AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181 (634)
Q Consensus 149 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 181 (634)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777776663
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.52 E-value=5.6e-06 Score=73.19 Aligned_cols=124 Identities=12% Similarity=0.037 Sum_probs=59.7
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 047120 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM--PMEPNDVIWRTLLSACRNYEN 532 (634)
Q Consensus 455 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~ 532 (634)
+-..+...|+-+....+...... ....|......++....+.|++..|...+++. .-++|...|+.+..+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 33344444444444444443322 11222333334455555555555555555554 233444455555555555555
Q ss_pred hhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 533 LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 533 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
+++|...|.+++++.|.+|..+++++..|.-.|+.++|..++......
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 555555555555555555555555555555555555555555554443
No 115
>PF12854 PPR_1: PPR repeat
Probab=98.52 E-value=7.6e-08 Score=57.20 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=17.7
Q ss_pred CCCCCcccHHHHHHHHHcCCCcchHHHHHHHH
Q 047120 79 REKKDPFLWNAIIKTYSHGLDPKEALVMFCLM 110 (634)
Q Consensus 79 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 110 (634)
|..||..+||+||.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34555555555555555555555555555555
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.52 E-value=2.4e-05 Score=84.17 Aligned_cols=222 Identities=14% Similarity=0.153 Sum_probs=171.4
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHhhCCC--------CChhHHHHHHHHHHHcCChHHHHHHhhhCCCC--ChhhHHHH
Q 047120 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPK--------RDVVSWANMIDGYAKLGRVDIARRLFDEMPKR--DVVACNAM 318 (634)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l 318 (634)
+...|-..|....+.++.++|.++.++.++ .-...|.++++.-..-|.-+...++|++..+- ....|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 345677778888888889999888888764 22457888888877888888889999988862 34578889
Q ss_pred HHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CchhHHHHHHHHhHhcC
Q 047120 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS-LNGKHGVALIDMYSKCG 397 (634)
Q Consensus 319 ~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 397 (634)
...|.+.+.+++|.++|+.|.+..+ -....|...+..+.+.++-+.|..++.++.+.-.+ -......-.+.+-.+.|
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 9999999999999999999998744 45567888888888988889999999988875322 23455666777888999
Q ss_pred CHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHH
Q 047120 398 SIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI--TFTGLLNACAHAGLVKEGLLCF 472 (634)
Q Consensus 398 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~ 472 (634)
+.+.+..+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-.. .|...+..--..|+-+.+..+=
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence 99999999988763 356689999999999999999999999999988877643 5666665555555554444433
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.51 E-value=1.2e-05 Score=71.25 Aligned_cols=154 Identities=14% Similarity=0.118 Sum_probs=96.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc
Q 047120 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497 (634)
Q Consensus 418 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 497 (634)
..+...+...|+-+....+....... ..-|.......+....+.|++..|...+.++.. .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44455556666666666666554432 112233444466666677777777777776664 335566677777777777
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHH
Q 047120 498 AGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVR 574 (634)
Q Consensus 498 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 574 (634)
.|+.+.|..-|.+. .+.|+ +..++.+...+.-.|+++.|+.++..+....+.++..-..|+.+....|++++|..+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777777666665 33333 4456666666666677777777777776666666677777777777777777776655
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=6.8e-06 Score=82.60 Aligned_cols=216 Identities=15% Similarity=0.059 Sum_probs=160.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc--CCChhHHHHHHHHHHHc
Q 047120 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE--DGSVDHWNAMINGLAIH 427 (634)
Q Consensus 350 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~ 427 (634)
.-..+...+...|-...|..+++.+. .+..++.+|...|+..+|..+..+-. ++++..|-.+.+.....
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccCh
Confidence 33445556667777777777776543 45567778888888777777766544 45666777777766666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHH
Q 047120 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNL 507 (634)
Q Consensus 428 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 507 (634)
.-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +....+|-.+.-+..+.++++.|.+.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 6677777777654332 11122222334688888888888776633 23456788888888899999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCc
Q 047120 508 IEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583 (634)
Q Consensus 508 ~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (634)
|... ...|| ...|+.+-.+|.+.|+-.+|...++++++-+-.+...|-+...+....|.+++|++.+.++.+....
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 9876 66777 5589999999999999999999999999999888889999999999999999999999998765443
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.47 E-value=1.4e-05 Score=74.25 Aligned_cols=181 Identities=14% Similarity=0.045 Sum_probs=126.9
Q ss_pred CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-C-chhHHHHHHHHhHhcCCHHHHHHHHHhccC--C-Chh---HHH
Q 047120 347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS-L-NGKHGVALIDMYSKCGSIENAIKVFEQIED--G-SVD---HWN 418 (634)
Q Consensus 347 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~---~~~ 418 (634)
....+......+...|+++.|...++.+.+.... + ....+..+..++...|++++|...++++.+ | +.. .+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3456777888889999999999999998875421 1 124667888999999999999999999863 2 222 456
Q ss_pred HHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHH
Q 047120 419 AMINGLAIH--------GLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG 489 (634)
Q Consensus 419 ~li~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 489 (634)
.+..++... |++++|.+.++++... .|+.. .+..+..... . ..... ....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~~---------~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRLA---------GKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHHH---------HHHH
Confidence 666666654 7789999999999875 55543 2222111100 0 00000 1122
Q ss_pred HHHHHHhccCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047120 490 CMVDILGRAGHIEAARNLIEDM-PM---EP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548 (634)
Q Consensus 490 ~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 548 (634)
.+...|.+.|++++|+..+++. .. .| ....+..++.++.+.|++++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5667788999999999998887 22 23 246888889999999999999998888776655
No 120
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.47 E-value=0.00045 Score=78.31 Aligned_cols=324 Identities=10% Similarity=0.026 Sum_probs=204.9
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChhH--HHHHHHHHHHcCChHHHHHHhhhCCC----CChhhHHHHHHHHHHcCCchH
Q 047120 257 LHGCVKCGKMDDAQALFDKMPKRDVVS--WANMIDGYAKLGRVDIARRLFDEMPK----RDVVACNAMMGGYVRNGYSMK 330 (634)
Q Consensus 257 ~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~ 330 (634)
...+...|++.+|.............. ...........|+.+.+...++.+.. .+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 445666777777776666654332211 12223345567888888888887742 233333445556678899999
Q ss_pred HHHHHHHHHhcCCC-----CCCHh--HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCch----hHHHHHHHHhHhcCCH
Q 047120 331 ALEIFDNMQCELYL-----HPDDA--SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG----KHGVALIDMYSKCGSI 399 (634)
Q Consensus 331 A~~~~~~m~~~~~~-----~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~ 399 (634)
+..++........- .|... ....+...+...|+++.|...++...+.....+. .....+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 99999887543111 11111 1222334456789999999999988763211121 2345566777889999
Q ss_pred HHHHHHHHhccC-------CC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHhccC
Q 047120 400 ENAIKVFEQIED-------GS--VDHWNAMINGLAIHGLGELAFDLLMEMERL----SIE--P-DDITFTGLLNACAHAG 463 (634)
Q Consensus 400 ~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~g 463 (634)
++|...+++... +. ...+..+...+...|++++|...+++.... +.. | ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 999999887652 11 224556677888999999999998886542 211 1 1234455566677789
Q ss_pred CHHHHHHHHHHhHHhcC-ccc--ChhHHHHHHHHHhccCCHHHHHHHHHhC----CCCCCHHHHH-----HHHHHHHhcC
Q 047120 464 LVKEGLLCFELMRRIHK-LEP--ELQHYGCMVDILGRAGHIEAARNLIEDM----PMEPNDVIWR-----TLLSACRNYE 531 (634)
Q Consensus 464 ~~~~a~~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~-----~l~~~~~~~g 531 (634)
++++|...+........ ..+ ....+..+...+...|++++|.+.++++ ........+. ..+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 99999999988755211 112 2334556777888999999999988776 1111111111 1123345589
Q ss_pred ChhHHHHHHHHHhccCCCCCch----HHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 532 NLNVGEPVAKHLIGMDSSNSSS----YVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 532 ~~~~a~~~~~~~~~~~p~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
+.+.|..++.......+..+.. +..++.++...|++++|...+++....
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999987766533322222 456788899999999999999988653
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=2.7e-05 Score=75.00 Aligned_cols=139 Identities=14% Similarity=0.073 Sum_probs=65.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhcc
Q 047120 421 INGLAIHGLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRA 498 (634)
Q Consensus 421 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 498 (634)
...+...|++++|+..++.+... .|+.. ........+.+.++..+|.+.++.+... .|+ ....-.+..+|.+.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhc
Confidence 33344445555555555555443 33322 2223333445555555555555555432 233 23333444555555
Q ss_pred CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHH
Q 047120 499 GHIEAARNLIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSM 576 (634)
Q Consensus 499 g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 576 (634)
|++.+|+.++++. ..+.|+..|..|..+|...|+..++.... +..|...|++++|+..+.+
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLMR 450 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHHH
Confidence 5555555555444 22333445555555555555544443222 2334445666666666666
Q ss_pred HHhCC
Q 047120 577 MKERN 581 (634)
Q Consensus 577 ~~~~~ 581 (634)
..+..
T Consensus 451 A~~~~ 455 (484)
T COG4783 451 ASQQV 455 (484)
T ss_pred HHHhc
Confidence 65543
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.46 E-value=2.2e-05 Score=69.84 Aligned_cols=156 Identities=13% Similarity=0.167 Sum_probs=114.7
Q ss_pred HHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 047120 390 IDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGL 469 (634)
Q Consensus 390 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 469 (634)
+-.|...|+++.+....+.+..+. ..+...++.++++..+++..+.. ..+...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445777777776654443322211 01122566778888888877652 335678999999999999999999
Q ss_pred HHHHHhHHhcCcccChhHHHHHHHHH-hccCC--HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047120 470 LCFELMRRIHKLEPELQHYGCMVDIL-GRAGH--IEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLI 544 (634)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 544 (634)
..|+.+.+.. +.+...+..+..++ .+.|+ .++|.+++++. ...|+ ...+..+...+...|++++|+..+++++
T Consensus 94 ~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998732 33577788888864 67777 59999999998 55554 6688888888999999999999999999
Q ss_pred ccCCCCCchHHH
Q 047120 545 GMDSSNSSSYVL 556 (634)
Q Consensus 545 ~~~p~~~~~~~~ 556 (634)
+..|++.+-+..
T Consensus 172 ~l~~~~~~r~~~ 183 (198)
T PRK10370 172 DLNSPRVNRTQL 183 (198)
T ss_pred hhCCCCccHHHH
Confidence 999887665443
No 123
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=3.5e-05 Score=77.68 Aligned_cols=190 Identities=14% Similarity=0.136 Sum_probs=161.0
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047120 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457 (634)
Q Consensus 378 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 457 (634)
+++|--..-..+...+...|-...|..+|+++ ..|...|.+|...|+..+|..+..+-.++ +||+..|..++.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 34555666777889999999999999999975 46888899999999999999999988873 789999999999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 047120 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNV 535 (634)
Q Consensus 458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 535 (634)
......-+++|.++.+..... .-..+.....+.++++++.+.|+.- .+.|- ..+|..+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888899999988876542 1222334445689999999999875 55554 5689989988899999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 536 GEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 536 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
|.+.|...+.++|++...|+++.-+|.+.|+..+|...+++..+.+.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999998874
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.41 E-value=4.4e-05 Score=80.74 Aligned_cols=143 Identities=13% Similarity=0.099 Sum_probs=118.9
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHH
Q 047120 378 QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED--G-SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD-ITFT 453 (634)
Q Consensus 378 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~ 453 (634)
.++.++..+..|.......|++++|..+++.+.+ | +......++..+.+.+++++|+..+++.... .|+. ....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 4567788999999999999999999999998873 3 4557888899999999999999999999985 6764 4677
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 047120 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM--PMEPNDVIWRTLL 524 (634)
Q Consensus 454 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 524 (634)
.+..++.+.|++++|..+|+++.. ..+-+...+..+..++...|+.++|...|++. ...|....|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 788889999999999999999986 22334778889999999999999999999988 3445566666555
No 125
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.40 E-value=2.4e-06 Score=70.24 Aligned_cols=96 Identities=8% Similarity=-0.032 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120 485 LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA 562 (634)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (634)
....-.+...+...|++++|.++|+-. ...|. ..-|..|...|...|++++|+..|.++..++|++|..+..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344455677788999999999999987 45555 5678889989999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHhC
Q 047120 563 GLGMWNDARRVRSMMKER 580 (634)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~ 580 (634)
..|+.+.|.+.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999988655
No 126
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.38 E-value=0.0031 Score=61.90 Aligned_cols=434 Identities=13% Similarity=0.093 Sum_probs=238.6
Q ss_pred CCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHH
Q 047120 116 SVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI--RDSVSYNSMID 193 (634)
Q Consensus 116 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 193 (634)
+-|..+|..||+-+..+ .++++++.++++... ++..+..|..-|..-.+..+++..+++|.+... -+...|...+.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 34667888888877665 788888888888764 344566777778888888888888888877543 35666665554
Q ss_pred HHHh-CCChHHHH----HHHhhCccC-CCC---hhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcC
Q 047120 194 GYVK-SGNIESAR----ELFDSMPIR-ERN---LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCG 264 (634)
Q Consensus 194 ~~~~-~g~~~~A~----~~~~~m~~~-~p~---~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 264 (634)
--.+ .|+...+. +.|+-.... ..| ...|+..+.-+-. ... +..|....
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~--------------vea---------~gk~ee~Q 151 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEG--------------VEA---------VGKYEENQ 151 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHc--------------ccc---------cccHHHHH
Confidence 3222 22222211 222221111 111 1112222111100 000 11123334
Q ss_pred ChHHHHHHHhhCCCC----------ChhHHHHHHHH-------HHHcCChHHHHHHhhhCCC---------C-----C--
Q 047120 265 KMDDAQALFDKMPKR----------DVVSWANMIDG-------YAKLGRVDIARRLFDEMPK---------R-----D-- 311 (634)
Q Consensus 265 ~~~~A~~~~~~~~~~----------~~~~~~~l~~~-------~~~~g~~~~A~~~~~~~~~---------~-----~-- 311 (634)
+++...++|+++... |-..|..=++. --+...+..|.++++++.. + .
T Consensus 152 RI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~ 231 (656)
T KOG1914|consen 152 RITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTK 231 (656)
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCh
Confidence 455555555555431 11111111111 0112234445555544431 0 0
Q ss_pred -----hhhHHHHHHHHHHcCC--------chHHHHHHHHHHhcCCCCCCHhHHH-HH----HHHHHccCC-------hHH
Q 047120 312 -----VVACNAMMGGYVRNGY--------SMKALEIFDNMQCELYLHPDDASLV-IV----LSAIAQLGH-------IDK 366 (634)
Q Consensus 312 -----~~~~~~l~~~~~~~g~--------~~~A~~~~~~m~~~~~~~p~~~~~~-~l----l~~~~~~~~-------~~~ 366 (634)
+..|-.+|.-=..++- .....-.+++....-+..|+.+... .. -+.+...|+ .++
T Consensus 232 ~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e 311 (656)
T KOG1914|consen 232 DEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDE 311 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHH
Confidence 1123333322111110 0122333333333334555543211 11 112233333 345
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHhHhc---CCHHHHHHHHHhccC---C-ChhHHHHHHHHHHHcCChHHHHHHHHH
Q 047120 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKC---GSIENAIKVFEQIED---G-SVDHWNAMINGLAIHGLGELAFDLLME 439 (634)
Q Consensus 367 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~A~~~~~~ 439 (634)
+..+++..++.-...+..+|..+.+.--.. +..+.....++++.. . -..+|-.++..-.+..-...|..+|.+
T Consensus 312 ~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~k 391 (656)
T KOG1914|consen 312 AASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKK 391 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHH
Confidence 556666555443333444444443322111 124555556655542 1 223677777877888889999999999
Q ss_pred HHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC---CCCC
Q 047120 440 MERLSIEP-DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM---PMEP 515 (634)
Q Consensus 440 m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p 515 (634)
..+.+..+ ....+..++.-+| .++.+-|.++|+.-.+++|- +...-...++.+...++-..|..+|++. .+.|
T Consensus 392 aR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 392 AREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred HhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 99988877 5667777777666 56888999999987775543 3344557788889999999999999988 2455
Q ss_pred C--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC----CchHHHHHHHHhcCCCchHHHHHHHHH
Q 047120 516 N--DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN----SSSYVLLSNMFAGLGMWNDARRVRSMM 577 (634)
Q Consensus 516 ~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 577 (634)
| ...|..++.--..-|++..+.++-++.....|.+ ...-..+.+-|.-.+.+..-..-++.|
T Consensus 469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 5 4689999999999999999999999988777722 124445566676666665444444433
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=8.3e-05 Score=65.86 Aligned_cols=115 Identities=11% Similarity=0.071 Sum_probs=72.3
Q ss_pred HhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHh----ccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 047120 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG----RAGHIEAARNLIEDM--PMEPNDVIWRTLLSACRNYEN 532 (634)
Q Consensus 459 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~ 532 (634)
+.+..+.+-|.+.++.|.. -.+..+.+.|..++. -.+.+.+|.-+|+++ +.+|+..+.+....++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~----ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQ----IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC
Confidence 3445556666666666654 123334444444333 344567777777777 356777777777777777778
Q ss_pred hhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHH-HHHHHHH
Q 047120 533 LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDA-RRVRSMM 577 (634)
Q Consensus 533 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 577 (634)
+++|+.+++.++..++.+|.+...++..-...|.-.++ .+.+.++
T Consensus 223 ~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 88888888777777777777777777766666666443 3334444
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.37 E-value=6.5e-05 Score=80.23 Aligned_cols=33 Identities=9% Similarity=0.096 Sum_probs=18.3
Q ss_pred CEEEEEEeCCCCCcchhHHHHHHHhcccCccccc
Q 047120 595 GVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSVAT 628 (634)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (634)
+.+..|.. ...|.-.-++.-..-....+||++.
T Consensus 329 ~i~IdF~~-k~gh~ms~~~A~~sL~pL~~dHi~v 361 (906)
T PRK14720 329 GIFVDFVS-KRGHKLSIQMAITALKPLKRDHIWV 361 (906)
T ss_pred ceEEEecc-CCCCcCCHHHHHHhcCcCChhheeh
Confidence 34455543 3446555555555555678888754
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.00038 Score=61.80 Aligned_cols=174 Identities=17% Similarity=0.122 Sum_probs=105.8
Q ss_pred HHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 047120 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI 450 (634)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 450 (634)
.+.+.......+......-...|...|++++|++.......-... -.=+..+.+..+.+-|.+.+++|.+- -+..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~--Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAA--ALNVQILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 334444333333333333445567777777777777763322222 22234455666777888888888753 2455
Q ss_pred HHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 047120 451 TFTGLLNACAH----AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM--PMEPNDVIWRTLL 524 (634)
Q Consensus 451 ~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 524 (634)
|.+-|..++.+ .+.+.+|.-+|+++.. ..+|+..+.+....++...|++++|..++++. ....++.+...++
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 66666655543 4567788888888865 35677777777777888888888888888877 3334455555555
Q ss_pred HHHHhcC-ChhHHHHHHHHHhccCCCCC
Q 047120 525 SACRNYE-NLNVGEPVAKHLIGMDSSNS 551 (634)
Q Consensus 525 ~~~~~~g-~~~~a~~~~~~~~~~~p~~~ 551 (634)
-.-...| +.+...+.+.++....|..+
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 4433334 44555666677766666654
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.34 E-value=5.1e-06 Score=69.51 Aligned_cols=96 Identities=16% Similarity=0.236 Sum_probs=70.7
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhc
Q 047120 486 QHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563 (634)
Q Consensus 486 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 563 (634)
.....+...+...|++++|.+.++.+ ...| +...|..+...+...|++++|...++++++.+|.++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 44556666777777777777777776 3233 456677777777777888888888888888888888888888888888
Q ss_pred CCCchHHHHHHHHHHhCC
Q 047120 564 LGMWNDARRVRSMMKERN 581 (634)
Q Consensus 564 ~g~~~~A~~~~~~~~~~~ 581 (634)
.|++++|.+.+++..+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 98 LGEPESALKALDLAIEIC 115 (135)
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 888888888887776654
No 131
>PLN02789 farnesyltranstransferase
Probab=98.34 E-value=0.00048 Score=66.04 Aligned_cols=235 Identities=10% Similarity=0.048 Sum_probs=147.6
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHh-HHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047120 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA-SLVIVLSAIAQLG-HIDKGVAIHRYLEKDQFSLNGKHGVALIDM 392 (634)
Q Consensus 315 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 392 (634)
+..+-..+...+..++|+.+..++.. +.|+.. .|......+...| ++++++..++.+.+.. +-+..+|+....+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~---lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIR---LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 44444555667778888888888873 456543 4444444555555 5678888888777654 3344455555444
Q ss_pred hHhcCCH--HHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CC
Q 047120 393 YSKCGSI--ENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA---GL 464 (634)
Q Consensus 393 ~~~~~~~--~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~ 464 (634)
+.+.|+. ++++.+++++. ..+..+|+....++...|+++++++.++++++.+.. +...|+.....+.+. |.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 5555553 56777777665 346667888888888888899999999999886432 344565555444433 22
Q ss_pred ----HHHHHHHHHHhHHhcCcccChhHHHHHHHHHhcc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---
Q 047120 465 ----VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA----GHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYE--- 531 (634)
Q Consensus 465 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--- 531 (634)
.++.+.+...+... .+-+...|+.+...+... ++..+|.+.+.+. ...| +......|+..|+...
T Consensus 195 ~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~ 272 (320)
T PLN02789 195 LEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPT 272 (320)
T ss_pred ccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccc
Confidence 24566666566552 234566788888777763 4456688887776 3344 4667777888776532
Q ss_pred ---------------ChhHHHHHHHHHhccCCCCCchHHH
Q 047120 532 ---------------NLNVGEPVAKHLIGMDSSNSSSYVL 556 (634)
Q Consensus 532 ---------------~~~~a~~~~~~~~~~~p~~~~~~~~ 556 (634)
..++|.++++.+-+-+|.....|..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~ 312 (320)
T PLN02789 273 AEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAW 312 (320)
T ss_pred hhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 2356777777775555655544443
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=0.00014 Score=63.92 Aligned_cols=165 Identities=15% Similarity=0.113 Sum_probs=107.8
Q ss_pred HHHHhHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 047120 389 LIDMYSKCGSIENAIKVFEQIEDG---SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLV 465 (634)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 465 (634)
++-+...+|+.+.|...++.+... +..+-..-..-+-..|.+++|+++++.+.+.. +.|..++..-+...-..|+-
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCc
Confidence 334444455555555555544321 11111111223445678888888888888763 23455776666666667777
Q ss_pred HHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh---cCChhHHHHHH
Q 047120 466 KEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRN---YENLNVGEPVA 540 (634)
Q Consensus 466 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~---~g~~~~a~~~~ 540 (634)
-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++ -+.|- +..+..+...+.- ..+++.+.++|
T Consensus 137 l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 137 LEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred HHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 788887777766 35678889999999999999999999999988 34454 4555666665433 33778889999
Q ss_pred HHHhccCCCCCchHHH
Q 047120 541 KHLIGMDSSNSSSYVL 556 (634)
Q Consensus 541 ~~~~~~~p~~~~~~~~ 556 (634)
.+++++.|.+...+..
T Consensus 215 ~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 215 ERALKLNPKNLRALFG 230 (289)
T ss_pred HHHHHhChHhHHHHHH
Confidence 9999998855544443
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=0.00016 Score=69.95 Aligned_cols=119 Identities=18% Similarity=0.133 Sum_probs=83.0
Q ss_pred HhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 047120 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVG 536 (634)
Q Consensus 459 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a 536 (634)
+...|++++|+..++.+.+. .+.|+..+....+.+.+.++.++|.+.++++ ...|+ ...+..+..++.+.|+..+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 44567777777777776652 3344555666677777777777777777776 45566 55666677777777777777
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 537 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
++.++.....+|.+|..|..|+.+|..+|+..++....-++..
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777776655543
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.27 E-value=0.00029 Score=75.49 Aligned_cols=80 Identities=18% Similarity=0.074 Sum_probs=38.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCC
Q 047120 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429 (634)
Q Consensus 350 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 429 (634)
.+..+..+|.+.|+.+++..+++++++.. +.|+.+.+.+...|... ++++|++++.+. +..|...++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq 184 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQ 184 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhc
Confidence 44444445555555555555555555544 33444555555555544 555555544332 122344444
Q ss_pred hHHHHHHHHHHHH
Q 047120 430 GELAFDLLMEMER 442 (634)
Q Consensus 430 ~~~A~~~~~~m~~ 442 (634)
+..+.++|.++..
T Consensus 185 ~~~~~e~W~k~~~ 197 (906)
T PRK14720 185 YVGIEEIWSKLVH 197 (906)
T ss_pred chHHHHHHHHHHh
Confidence 5555555555444
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.24 E-value=2e-05 Score=76.92 Aligned_cols=123 Identities=13% Similarity=0.123 Sum_probs=100.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 047120 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-P-MEPNDVIWRTLLSACR 528 (634)
Q Consensus 451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~ 528 (634)
....++..+...++++.|+.+++++.+. .|+ ....++..+...++-.+|.+++.+. . .+.+...+..-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445566666778889999999888763 344 4455788888888888899888887 3 3335666666677788
Q ss_pred hcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120 529 NYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578 (634)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 578 (634)
+.++++.|..+.+++++..|.+..+|..|+.+|.+.|++++|+-.++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999885
No 136
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.24 E-value=0.0065 Score=59.71 Aligned_cols=173 Identities=15% Similarity=0.066 Sum_probs=117.7
Q ss_pred chHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-chhHHHHHHHHhHhcCCHHHHHHHH
Q 047120 328 SMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL-NGKHGVALIDMYSKCGSIENAIKVF 406 (634)
Q Consensus 328 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 406 (634)
.+.....++++.....+.|+ .+|...++...+..-++.|..+|.++.+.+..+ ++.+.++++..||. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 55666677777654344444 356677777788888888999999888877666 77888888887774 6778888888
Q ss_pred HhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-
Q 047120 407 EQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD--ITFTGLLNACAHAGLVKEGLLCFELMRRIHK- 480 (634)
Q Consensus 407 ~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~- 480 (634)
+.-.+ .++.--...+.-+...++-..+..+|++....++.|+. ..|..++.--..-|++..+.++-++......
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 76542 23444456677777788888888888888887666663 4788888888888888888877776654322
Q ss_pred -cccChhHHHHHHHHHhccCCHH
Q 047120 481 -LEPELQHYGCMVDILGRAGHIE 502 (634)
Q Consensus 481 -~~~~~~~~~~l~~~~~~~g~~~ 502 (634)
..+....-..+++-|.-.+.+.
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hhcCCCChHHHHHHHHhhccccc
Confidence 2222223334455555444443
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.00015 Score=63.75 Aligned_cols=163 Identities=13% Similarity=0.076 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHH
Q 047120 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494 (634)
Q Consensus 416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 494 (634)
.|..++-+....|+.+.|...++++... + |.+. .-..-..-+...|++++|.++++....+ -+.|..++-.=+-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 5666777788889999999999999886 3 5543 2222233355689999999999999874 24456666666666
Q ss_pred HhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCC---CchH
Q 047120 495 LGRAGHIEAARNLIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG---MWND 569 (634)
Q Consensus 495 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~ 569 (634)
...+|+.-+|++-+.+. ....|...|.-+...|...|+++.|.-.+++++=..|-+|-.+..+++++.-.| +++-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77788888888877766 566789999999999999999999999999999999999999999999977655 4567
Q ss_pred HHHHHHHHHhCCC
Q 047120 570 ARRVRSMMKERNL 582 (634)
Q Consensus 570 A~~~~~~~~~~~~ 582 (634)
|.+++.+..+...
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 8899988877655
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.17 E-value=2.6e-06 Score=51.64 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=30.1
Q ss_pred ccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCc
Q 047120 85 FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDK 119 (634)
Q Consensus 85 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 119 (634)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36889999999999999999999999988888874
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.14 E-value=0.017 Score=60.54 Aligned_cols=404 Identities=14% Similarity=0.123 Sum_probs=197.2
Q ss_pred hcCCHHHHHHHHhhCCCC-ChhHHHHHHHH--HHhCCChHHHHHHHhhCccC-CCChhHHHHHHHHHHhcCCcHHHHHHH
Q 047120 166 RCGYLEFARQLFDKMGIR-DSVSYNSMIDG--YVKSGNIESARELFDSMPIR-ERNLISWNSVLNGYAQLKSGLQFAWQI 241 (634)
Q Consensus 166 ~~g~~~~A~~~~~~~~~~-~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~-~p~~~~~~~ll~~~~~~~~~~~~a~~~ 241 (634)
..+++.+|.+..+++.++ ....|...+.+ +.+.|+.++|..+++..... ..|..|...+-.+|...+. .++|..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~-~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK-LDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh-hhHHHHH
Confidence 456777777777766432 22234444443 35677888888777766555 3355566666666666676 7777777
Q ss_pred HhhCCC--CCchHHHHHHHHHHhcCChH----HHHHHHhhCCCCChhHHHHHHHHHHHc-CC---------hHHHHHHhh
Q 047120 242 FEKMPE--RDLISWNSMLHGCVKCGKMD----DAQALFDKMPKRDVVSWANMIDGYAKL-GR---------VDIARRLFD 305 (634)
Q Consensus 242 ~~~~~~--~~~~~~~~l~~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~l~~~~~~~-g~---------~~~A~~~~~ 305 (634)
+++... |+......+..+|.+.+.+. -|++++....+.--.-|+. ++.+... .. ..-|.+.++
T Consensus 100 Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 100 YERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHHHHH
Confidence 777766 44444444555666655553 3455555444333333332 2222211 11 122344444
Q ss_pred hCCCCC-h----hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 047120 306 EMPKRD-V----VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS 380 (634)
Q Consensus 306 ~~~~~~-~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 380 (634)
.+.+.+ . .-...-...+-..|++++|++++..-..+.-...+...-+.-+..+...+++.+..++-.++...|..
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 443322 0 00111122334456666666666333322111222233334455555666666666666666665522
Q ss_pred CchhHHHHHHHHh----------------HhcCCHHHHHHHHHhccCC-ChhHHHHHHHHH---HHcCChHHHHHHHHHH
Q 047120 381 LNGKHGVALIDMY----------------SKCGSIENAIKVFEQIEDG-SVDHWNAMINGL---AIHGLGELAFDLLMEM 440 (634)
Q Consensus 381 ~~~~~~~~l~~~~----------------~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~---~~~~~~~~A~~~~~~m 440 (634)
| |...++.+ ...+..+...+..++.... .-..|-+=+.++ ..-|+.+++.-.|-+-
T Consensus 259 -d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k 334 (932)
T KOG2053|consen 259 -D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK 334 (932)
T ss_pred -c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH
Confidence 1 22222111 1112222222222222211 111122222222 2335555544333222
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChh-------HHHHHHHHHhccCCH-----HHHHHHH
Q 047120 441 ERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ-------HYGCMVDILGRAGHI-----EAARNLI 508 (634)
Q Consensus 441 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~-----~~A~~~~ 508 (634)
. |-.| .|..=+..|...=..++-..++..... ..++.. -+.+.+......|.+ +.-..++
T Consensus 335 f--g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~---~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~ 406 (932)
T KOG2053|consen 335 F--GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVL---ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYV 406 (932)
T ss_pred h--CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhc---cCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHH
Confidence 1 2122 222222233333334444444444432 122211 123333333334422 2223333
Q ss_pred HhC------C------CCCCH---------HHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCCchHHHHHHHHhcC
Q 047120 509 EDM------P------MEPND---------VIWRTLLSACRNYEN---LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL 564 (634)
Q Consensus 509 ~~~------~------~~p~~---------~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 564 (634)
++. + .-|.. .+.+.|+..+.+.++ +-+|+-+++..+..+|-|+.+-..++.+|.-.
T Consensus 407 ~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~l 486 (932)
T KOG2053|consen 407 RKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYL 486 (932)
T ss_pred HHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHh
Confidence 222 1 11222 134567777887665 56788888999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhCCCc
Q 047120 565 GMWNDARRVRSMMKERNLK 583 (634)
Q Consensus 565 g~~~~A~~~~~~~~~~~~~ 583 (634)
|-+..|.+.++.+--..|.
T Consensus 487 Ga~p~a~~~y~tLdIK~IQ 505 (932)
T KOG2053|consen 487 GAFPDAYELYKTLDIKNIQ 505 (932)
T ss_pred cCChhHHHHHHhcchHHhh
Confidence 9999999999988555554
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.10 E-value=7.6e-05 Score=62.34 Aligned_cols=114 Identities=11% Similarity=0.046 Sum_probs=84.3
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CC
Q 047120 436 LLMEMERLSIEPDD-ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PM 513 (634)
Q Consensus 436 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 513 (634)
.+++.... .|+. .....+...+...|++++|.+.++.+... .+.+...+..+...+.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445443 4543 45566677778888888888888888762 2345677788888888889999998888877 33
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCch
Q 047120 514 EP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS 553 (634)
Q Consensus 514 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 553 (634)
.| +...+..+...+...|++++|...++++++.+|.++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 44 46677777888888999999999999999988877653
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.10 E-value=0.00013 Score=71.38 Aligned_cols=127 Identities=14% Similarity=0.093 Sum_probs=100.7
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 047120 384 KHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP-DDITFTGLLNACAHA 462 (634)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~ 462 (634)
.....|+..+...++++.|+.+|+++.+.++.....++..+...++-.+|++++.+.... .| +...+..-...|.+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 444566777777888888888888888777777777888888888888999998888865 34 455666667778889
Q ss_pred CCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhCCCCC
Q 047120 463 GLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDMPMEP 515 (634)
Q Consensus 463 g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 515 (634)
++++.|+.+.+++... .|+ ..+|..|..+|.+.|+++.|+..++.+++-+
T Consensus 248 ~~~~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999988763 454 5689999999999999999999998886443
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.08 E-value=4.5e-06 Score=50.11 Aligned_cols=33 Identities=30% Similarity=0.511 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCC
Q 047120 85 FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSV 117 (634)
Q Consensus 85 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 117 (634)
.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 568888888888888888888888888877776
No 143
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.08 E-value=3.3e-06 Score=63.54 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=46.9
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHH
Q 047120 498 AGHIEAARNLIEDM-PMEP---NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV 573 (634)
Q Consensus 498 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 573 (634)
.|+++.|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666665 2222 334444466666677777777777766 555565556666667777777777777777
Q ss_pred HHH
Q 047120 574 RSM 576 (634)
Q Consensus 574 ~~~ 576 (634)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 664
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.07 E-value=0.00012 Score=61.78 Aligned_cols=85 Identities=13% Similarity=0.185 Sum_probs=39.2
Q ss_pred HHHHHhccCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCC
Q 047120 491 MVDILGRAGHIEAARNLIEDM-PMEPND----VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565 (634)
Q Consensus 491 l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 565 (634)
+...+...|++++|...|+.+ ...||. .....|...+...|++++|...++. +...+..+..+...+++|.+.|
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCC
Confidence 334444555555555555544 111222 1223334444555555555555543 1222333344555555555555
Q ss_pred CchHHHHHHHH
Q 047120 566 MWNDARRVRSM 576 (634)
Q Consensus 566 ~~~~A~~~~~~ 576 (634)
++++|...|++
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 55555555544
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.05 E-value=3e-05 Score=59.99 Aligned_cols=93 Identities=15% Similarity=0.198 Sum_probs=75.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCC
Q 047120 488 YGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565 (634)
Q Consensus 488 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 565 (634)
+..++..+...|++++|...++++ ...|+ ...+..+...+...|++++|...++++++..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677778888888888888876 33443 4667777777888899999999999999988888888889999999999
Q ss_pred CchHHHHHHHHHHhC
Q 047120 566 MWNDARRVRSMMKER 580 (634)
Q Consensus 566 ~~~~A~~~~~~~~~~ 580 (634)
++++|...+++..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988887654
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.04 E-value=0.00026 Score=59.74 Aligned_cols=124 Identities=14% Similarity=0.096 Sum_probs=84.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC--hhHHHH
Q 047120 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDD----ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE--LQHYGC 490 (634)
Q Consensus 417 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~ 490 (634)
|..++..+ ..++...+...++.+.+. .|+. .....+...+...|++++|...|+.+... ...|. ......
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 44444444 467788888888888775 3332 24445566777888888888888888773 21222 123445
Q ss_pred HHHHHhccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047120 491 MVDILGRAGHIEAARNLIEDMP-MEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544 (634)
Q Consensus 491 l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 544 (634)
|...+...|++++|+..++... -......+......+...|+.++|...|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 6778888888888888887763 22334566667777888888888888888763
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.01 E-value=5.9e-05 Score=61.37 Aligned_cols=93 Identities=13% Similarity=0.042 Sum_probs=52.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---CchHHHHHH
Q 047120 488 YGCMVDILGRAGHIEAARNLIEDM-PMEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN---SSSYVLLSN 559 (634)
Q Consensus 488 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 559 (634)
+..++..+.+.|++++|.+.++++ ...|+ ...+..+..++...|++++|...+++++...|.+ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455555566666666665555 22222 2244445555666666666666666666655543 335556666
Q ss_pred HHhcCCCchHHHHHHHHHHhC
Q 047120 560 MFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~ 580 (634)
++.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666554
No 148
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.00 E-value=0.018 Score=55.63 Aligned_cols=416 Identities=11% Similarity=0.097 Sum_probs=209.1
Q ss_pred ccCChHHHHHHHHHHHHhcCCCChh------HHHHHHHHHHhcCCHHHHHHHHhhCCCC-ChhHHHHHHHH--HHhCCCh
Q 047120 131 RLGLIEEGLQIHGLLRKVAFGSDLF------LQNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMIDG--YVKSGNI 201 (634)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~g~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~--~~~~g~~ 201 (634)
+++++.++..+|.++.+.. ..+++ .-+.++++|.- .+++.....+....+. ....|-.+..+ +-+.+.+
T Consensus 18 kq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred HHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 6778888888888876543 22222 23456666654 3344444443333221 13344444443 3466777
Q ss_pred HHHHHHHhhCccC----CCCh-h-HHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhh
Q 047120 202 ESARELFDSMPIR----ERNL-I-SWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK 275 (634)
Q Consensus 202 ~~A~~~~~~m~~~----~p~~-~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 275 (634)
.+|++.+..-... .|.. . -+..++ +|...-+..++++...|++.++..++++
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~----------------------~df~l~~i~a~sLIe~g~f~EgR~iLn~ 153 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLF----------------------SDFFLDEIEAHSLIETGRFSEGRAILNR 153 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHh----------------------hHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 7777766544332 1100 0 000000 1112223445666677777777777666
Q ss_pred CCC--------CChhHHHHHHHHHHHcCChH---------------HHHHHhhhCCC----------CChhhHHHHHHHH
Q 047120 276 MPK--------RDVVSWANMIDGYAKLGRVD---------------IARRLFDEMPK----------RDVVACNAMMGGY 322 (634)
Q Consensus 276 ~~~--------~~~~~~~~l~~~~~~~g~~~---------------~A~~~~~~~~~----------~~~~~~~~l~~~~ 322 (634)
+.+ =+..+|+.++-++++.=-++ .+.-..+++.. |.......++...
T Consensus 154 i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhl 233 (549)
T PF07079_consen 154 IIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHL 233 (549)
T ss_pred HHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHH
Confidence 642 35566666555444431111 11111111111 1111112222222
Q ss_pred HHc--CCchHHHHHHHHHHhcCCCCCCHhH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCC----chhHHHHHHHHhHh
Q 047120 323 VRN--GYSMKALEIFDNMQCELYLHPDDAS-LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSL----NGKHGVALIDMYSK 395 (634)
Q Consensus 323 ~~~--g~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~ 395 (634)
.-. .+..--+++++..... -+.|+... ...+...... +.+.+..+.+.+....+.+ -...+..++....+
T Consensus 234 fi~p~e~l~~~mq~l~~We~~-yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk 310 (549)
T PF07079_consen 234 FIVPKERLPPLMQILENWENF-YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVK 310 (549)
T ss_pred HhCCHhhccHHHHHHHHHHhh-ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1122223333333333 45565322 2222222222 5555555554444332111 13455666666777
Q ss_pred cCCHHHHHHHHHhcc--CCChhH-------HHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHH---HH
Q 047120 396 CGSIENAIKVFEQIE--DGSVDH-------WNAMINGLA----IHGLGELAFDLLMEMERLSIEPDDI-TFTGLL---NA 458 (634)
Q Consensus 396 ~~~~~~A~~~~~~~~--~~~~~~-------~~~li~~~~----~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll---~~ 458 (634)
.++...|.+.+.-+. +|+... -..+-+..+ ..-+...=+.+|+...... .|.. ....++ .-
T Consensus 311 ~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrqQLvh~L~~~Ak~ 388 (549)
T PF07079_consen 311 QVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQQLVHYLVFGAKH 388 (549)
T ss_pred HHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHH
Confidence 788888877776554 332211 111112222 1122334455666665542 3432 222222 33
Q ss_pred HhccCC-HHHHHHHHHHhHHhcCcccChhHHHHHHH----HHhcc---CCHH---HHHHHHHhCCCCCC----HHHHHHH
Q 047120 459 CAHAGL-VKEGLLCFELMRRIHKLEPELQHYGCMVD----ILGRA---GHIE---AARNLIEDMPMEPN----DVIWRTL 523 (634)
Q Consensus 459 ~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~---g~~~---~A~~~~~~~~~~p~----~~~~~~l 523 (634)
+.+.|. -++|+++++.+.+-. +-|...-|.+.. .|.+. ..+. +-..++++.+++|- ...-+.|
T Consensus 389 lW~~g~~dekalnLLk~il~ft--~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L 466 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFT--NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL 466 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence 555665 888999999887721 234443333222 22221 1111 22334455565553 3466777
Q ss_pred HHH--HHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120 524 LSA--CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578 (634)
Q Consensus 524 ~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 578 (634)
..| +...|++.++.-.-.-+.+..| +|.+|..+|..+....++++|..++..+.
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 776 5789999999998888889999 89999999999999999999999998763
No 149
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.99 E-value=1.1e-05 Score=57.98 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCC-CchHHHHHHHHHHhC
Q 047120 516 NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG-MWNDARRVRSMMKER 580 (634)
Q Consensus 516 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 580 (634)
+..+|..+...+...|++++|+..|+++++.+|.++..|..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788888999999999999999999999999999999999999999999 799999999988653
No 150
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.95 E-value=7.3e-05 Score=67.65 Aligned_cols=105 Identities=14% Similarity=0.053 Sum_probs=60.4
Q ss_pred HhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 047120 459 CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVG 536 (634)
Q Consensus 459 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a 536 (634)
..+.++|.+|+..|..+++. .+-|...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 44556666666666666542 1223444555556666666666666655554 44454 33666666666666666666
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHhcCC
Q 047120 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565 (634)
Q Consensus 537 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 565 (634)
++.|+++++++|.+......|-.+-.+.+
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 66666666666666655555554444333
No 151
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.94 E-value=2e-05 Score=55.83 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=49.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 523 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
+...+...|++++|+..++++++.+|.++..+..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556788899999999999999999999999999999999999999999999888654
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.92 E-value=0.00014 Score=59.07 Aligned_cols=105 Identities=9% Similarity=0.024 Sum_probs=64.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 047120 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN----DVIWRTLL 524 (634)
Q Consensus 451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 524 (634)
++..+...+.+.|++++|...++.+.....-.+ ....+..+..++.+.|++++|.+.++++ ...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455556666666666666666655321111 1234555666777777777777777765 22233 34566666
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCCchHH
Q 047120 525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555 (634)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (634)
.++.+.|+.++|...++++++..|+++....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7777788888888888888888777655443
No 153
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.92 E-value=2.1e-05 Score=47.52 Aligned_cols=33 Identities=42% Similarity=0.633 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 047120 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPD 448 (634)
Q Consensus 416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 448 (634)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888889999999999888888887
No 154
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.89 E-value=0.049 Score=57.25 Aligned_cols=206 Identities=20% Similarity=0.178 Sum_probs=95.1
Q ss_pred CCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHh--ccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHH
Q 047120 97 GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS--RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFAR 174 (634)
Q Consensus 97 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 174 (634)
.+++.+|+.....+.+.- |+. .|..++.++. +.|..++|..+++.....+.. |..+...+-.+|-+.++.++|.
T Consensus 22 ~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 455555555555554421 332 2334444432 555555555555554444333 5555555555555566666666
Q ss_pred HHHhhCCC--CChhHHHHHHHHHHhCCChH----HHHHHHhhCccCCCChhHHHHHHHHHHhcCC---------cHHHHH
Q 047120 175 QLFDKMGI--RDSVSYNSMIDGYVKSGNIE----SARELFDSMPIRERNLISWNSVLNGYAQLKS---------GLQFAW 239 (634)
Q Consensus 175 ~~~~~~~~--~~~~~~~~li~~~~~~g~~~----~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~---------~~~~a~ 239 (634)
.+++.... |+..-...+..+|++.+.+. .|+++++.... ....+-++++.+..... -+..|.
T Consensus 98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk---~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK---RAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---ccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 66655543 33333334444455544443 24444443322 11222222222222110 123344
Q ss_pred HHHhhCCCCC--c---hHHHHHHHHHHhcCChHHHHHHHhh-----CCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCC
Q 047120 240 QIFEKMPERD--L---ISWNSMLHGCVKCGKMDDAQALFDK-----MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309 (634)
Q Consensus 240 ~~~~~~~~~~--~---~~~~~l~~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 309 (634)
+.++.+.+.+ . .-.......+...|++++|.+++.. ....+...-+.-++.+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4444444322 1 1111123344566777777777622 1223444445566666777777766665555543
No 155
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.85 E-value=0.00014 Score=63.47 Aligned_cols=96 Identities=9% Similarity=0.020 Sum_probs=65.7
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 047120 486 QHYGCMVDILGRAGHIEAARNLIEDM-PMEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560 (634)
Q Consensus 486 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 560 (634)
..+..+...+...|++++|...++++ ...|+ ...+..+...+.+.|++++|...++++++..|.++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555666666677777777776665 22222 34667777777888888888888888888888888888888888
Q ss_pred HhcCCC--------------chHHHHHHHHHHhCC
Q 047120 561 FAGLGM--------------WNDARRVRSMMKERN 581 (634)
Q Consensus 561 ~~~~g~--------------~~~A~~~~~~~~~~~ 581 (634)
|...|+ +++|.+++++....+
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 877666 456666666665543
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.84 E-value=0.00012 Score=72.06 Aligned_cols=109 Identities=8% Similarity=0.037 Sum_probs=90.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 047120 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYE 531 (634)
Q Consensus 454 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g 531 (634)
.-...+...|++++|+..|+.+.+. .+.+...|..+..+|.+.|++++|+..++++ .+.|+ ...|..+..+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 3455677889999999999999873 2335677888999999999999999999998 55564 668888889999999
Q ss_pred ChhHHHHHHHHHhccCCCCCchHHHHHHHHhcC
Q 047120 532 NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL 564 (634)
Q Consensus 532 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 564 (634)
++++|+..++++++++|.++.....+..+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998887776665433
No 157
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.83 E-value=3.5e-05 Score=46.12 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 047120 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEP 447 (634)
Q Consensus 415 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 447 (634)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888888776
No 158
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.83 E-value=0.00014 Score=63.24 Aligned_cols=93 Identities=8% Similarity=-0.138 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHH
Q 047120 485 LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559 (634)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 559 (634)
...|..++..+...|++++|+..+++. .+.|+ ..+|..+...+...|++++|+..++++++..|..+..+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455677777788888888888888877 33333 3478888888999999999999999999999988888888888
Q ss_pred HHh-------cCCCchHHHHHHHHH
Q 047120 560 MFA-------GLGMWNDARRVRSMM 577 (634)
Q Consensus 560 ~~~-------~~g~~~~A~~~~~~~ 577 (634)
++. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888666666554
No 159
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.83 E-value=0.00084 Score=68.97 Aligned_cols=139 Identities=12% Similarity=0.004 Sum_probs=83.4
Q ss_pred CChhHHHHHHHHHHH--cC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc--------CCHHHHHHHHHHhHH
Q 047120 412 GSVDHWNAMINGLAI--HG---LGELAFDLLMEMERLSIEPDD-ITFTGLLNACAHA--------GLVKEGLLCFELMRR 477 (634)
Q Consensus 412 ~~~~~~~~li~~~~~--~~---~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~--------g~~~~a~~~~~~~~~ 477 (634)
.+...|...+.+... .+ +...|..+|++..+. .|+. ..|..+..++... .++..+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 455556555555332 22 256777888887764 6663 3444433332211 122333333333322
Q ss_pred hcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 047120 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552 (634)
Q Consensus 478 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 552 (634)
......+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|.+|.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1112334456666666666678888888888777 56677777777777788888888888888888888877764
No 160
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.81 E-value=0.03 Score=53.73 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhhC
Q 047120 187 SYNSMIDGYVKSGNIESARELFDSM 211 (634)
Q Consensus 187 ~~~~li~~~~~~g~~~~A~~~~~~m 211 (634)
+|..+.....+.|+.+-|..+++.=
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~E 26 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLELE 26 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHcC
Confidence 5667777778888888888877643
No 161
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.80 E-value=2.5e-05 Score=45.65 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=24.8
Q ss_pred ccHHHHHHHHHcCCCcchHHHHHHHHHHCCC
Q 047120 85 FLWNAIIKTYSHGLDPKEALVMFCLMLDNGV 115 (634)
Q Consensus 85 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 115 (634)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887763
No 162
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.75 E-value=0.0024 Score=63.84 Aligned_cols=282 Identities=15% Similarity=0.101 Sum_probs=136.0
Q ss_pred CCCCcccHHHHHHHHHcCCCcchHHHH---------HHHHHHCCCCCCcchHHHHHHHHhccCChH--HHHHHHHHHHHh
Q 047120 80 EKKDPFLWNAIIKTYSHGLDPKEALVM---------FCLMLDNGVSVDKFSASLVLKACSRLGLIE--EGLQIHGLLRKV 148 (634)
Q Consensus 80 ~~~~~~~~~~li~~~~~~g~~~~A~~~---------~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~ 148 (634)
+.+-.+.+.+-+..|...|.+++|.++ |+.+-.. ..+.-.++..=++|.+..+.. +...-++++.++
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~r 629 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKR 629 (1081)
T ss_pred eecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 345556666777778888888887765 2222111 123333444445565555443 333345566777
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHH
Q 047120 149 AFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGY 228 (634)
Q Consensus 149 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~ 228 (634)
|-.|+... +...++-.|.+.+|.++|.+ .|.-..|+++|..|.- + ....-+
T Consensus 630 ge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRM-------F-D~aQE~ 680 (1081)
T KOG1538|consen 630 GETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRM-------F-DYAQEF 680 (1081)
T ss_pred CCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHH-------H-HHHHHH
Confidence 76676654 34556677888888887765 5666677777766543 0 011111
Q ss_pred HhcCCcHHHHHHHHhhCCC--CCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhh
Q 047120 229 AQLKSGLQFAWQIFEKMPE--RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE 306 (634)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 306 (634)
...+. .++-..+.++-.+ .|+.--.+....+...|+.++|..+ ....|-.+-+.++-++
T Consensus 681 ~~~g~-~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i------------------~~d~gW~d~lidI~rk 741 (1081)
T KOG1538|consen 681 LGSGD-PKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEI------------------CGDHGWVDMLIDIARK 741 (1081)
T ss_pred hhcCC-hHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhh------------------hhcccHHHHHHHHHhh
Confidence 11122 1111111110000 0110011112233334444433322 2223333444444444
Q ss_pred CCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHH
Q 047120 307 MPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG 386 (634)
Q Consensus 307 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 386 (634)
+...+..+...+..-+.+...+..|.++|..|-.. ..++......+++++|..+-+..-+ +.+ .+|
T Consensus 742 ld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe--~~~--dVy 807 (1081)
T KOG1538|consen 742 LDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPE--FKD--DVY 807 (1081)
T ss_pred cchhhhhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCcc--ccc--ccc
Confidence 44444444444444455555566666666665421 2344444555566555554433222 111 223
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 047120 387 VALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443 (634)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 443 (634)
......++...++++|.+ +|.+.|+-.+|..+++++...
T Consensus 808 ~pyaqwLAE~DrFeEAqk------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 808 MPYAQWLAENDRFEEAQK------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred chHHHHhhhhhhHHHHHH------------------HHHHhcchHHHHHHHHHhhhh
Confidence 334444555555555554 455677888888888877654
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.74 E-value=0.00034 Score=68.74 Aligned_cols=104 Identities=14% Similarity=0.123 Sum_probs=83.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc
Q 047120 419 AMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497 (634)
Q Consensus 419 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 497 (634)
.....+...|++++|+..|++.++. .|+ ...|..+..++...|++++|+..++.+.... +.+...|..+..+|..
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHH
Confidence 3456677889999999999999985 554 5688888999999999999999999998731 3356678889999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 047120 498 AGHIEAARNLIEDM-PMEPNDVIWRTLLSA 526 (634)
Q Consensus 498 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 526 (634)
.|++++|+..|+++ .+.|+.......+..
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999997 666775555544433
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.74 E-value=0.0055 Score=58.36 Aligned_cols=90 Identities=10% Similarity=0.129 Sum_probs=38.5
Q ss_pred Hhcc-CCHHHHHHHHHHhHHhcCcccC----hhHHHHHHHHHhccCCHHHHHHHHHhCC---C-----CCCHH-HHHHHH
Q 047120 459 CAHA-GLVKEGLLCFELMRRIHKLEPE----LQHYGCMVDILGRAGHIEAARNLIEDMP---M-----EPNDV-IWRTLL 524 (634)
Q Consensus 459 ~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-----~p~~~-~~~~l~ 524 (634)
|... |++++|.+.|+.+...+....+ ..++..++..+.+.|++++|.++|++.. . +.+.. .+...+
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~ 203 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAI 203 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 4444 5555555555554442111111 2234455555566666666666665541 0 11111 111222
Q ss_pred HHHHhcCChhHHHHHHHHHhccCC
Q 047120 525 SACRNYENLNVGEPVAKHLIGMDS 548 (634)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~p 548 (634)
-.+...||...|.+.+++....+|
T Consensus 204 l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 204 LCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 233445666666666666665555
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.71 E-value=0.00096 Score=58.23 Aligned_cols=129 Identities=12% Similarity=0.081 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHH
Q 047120 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD--DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV 492 (634)
Q Consensus 415 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 492 (634)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...++++.... +.+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHH
Confidence 3566666667777777777777777665432222 2456666666677777777777777666521 12244455555
Q ss_pred HHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCC
Q 047120 493 DILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGM 566 (634)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 566 (634)
.+|...|+...+..-++.. ...+++|.++++++++.+|++ |..++..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666666554444322221 012677888888888888766 5555555554443
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.70 E-value=0.00011 Score=55.24 Aligned_cols=80 Identities=13% Similarity=0.189 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHH
Q 047120 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND-VIWRTLLSACRNYENLNVGEPVAK 541 (634)
Q Consensus 463 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~ 541 (634)
|+++.|+.+++++.+.....++...+..+..+|.+.|++++|..++++.+..|.. .....+..+|.+.|++++|+.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4444455555444442111112222333445555555555555555443222221 222223334445555555555544
Q ss_pred H
Q 047120 542 H 542 (634)
Q Consensus 542 ~ 542 (634)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 3
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.67 E-value=0.00012 Score=51.74 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=49.3
Q ss_pred HHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 047120 491 MVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551 (634)
Q Consensus 491 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (634)
+...+.+.|++++|++.|+++ ...|+ ...+..+..++...|++++|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788889999999999887 55564 56888888889999999999999999999998875
No 168
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.00018 Score=65.17 Aligned_cols=90 Identities=16% Similarity=0.197 Sum_probs=80.0
Q ss_pred HHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHH
Q 047120 493 DILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDA 570 (634)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 570 (634)
.-+.+.+++++|+..|.++ .+.| |.+.|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|..+|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4456889999999999987 6665 4677788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 047120 571 RRVRSMMKERNL 582 (634)
Q Consensus 571 ~~~~~~~~~~~~ 582 (634)
++.|++..+...
T Consensus 169 ~~aykKaLeldP 180 (304)
T KOG0553|consen 169 IEAYKKALELDP 180 (304)
T ss_pred HHHHHhhhccCC
Confidence 999998877543
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.61 E-value=0.00058 Score=52.54 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=43.8
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 047120 456 LNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENL 533 (634)
Q Consensus 456 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 533 (634)
...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.+.+++. ...| +..++..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 333444455555555554444311 112233444455555555555555555543 2222 223455555555556666
Q ss_pred hHHHHHHHHHhccCC
Q 047120 534 NVGEPVAKHLIGMDS 548 (634)
Q Consensus 534 ~~a~~~~~~~~~~~p 548 (634)
+.|...++++++..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 666666666655544
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.60 E-value=5.5e-05 Score=54.19 Aligned_cols=53 Identities=9% Similarity=0.223 Sum_probs=42.7
Q ss_pred HhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 528 RNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
...|++++|++.++++++.+|.++..+..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45688888888888888888888888888888888888888888888776544
No 171
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.59 E-value=0.00017 Score=52.47 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=51.5
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
..+.+.+++++|.++++++++.+|.++..+...+.++.+.|++++|.+.+++..+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4678889999999999999999999999999999999999999999999998876544
No 172
>PRK15331 chaperone protein SicA; Provisional
Probab=97.57 E-value=0.00073 Score=56.15 Aligned_cols=90 Identities=9% Similarity=0.017 Sum_probs=77.4
Q ss_pred HHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCc
Q 047120 490 CMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMW 567 (634)
Q Consensus 490 ~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 567 (634)
....-+...|++++|..+|+-+ -. .-+..-|..|...+...+++++|+..|..+..+++++|......+..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3455567899999999999877 22 334566788888888899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 047120 568 NDARRVRSMMKE 579 (634)
Q Consensus 568 ~~A~~~~~~~~~ 579 (634)
+.|...|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 173
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0018 Score=59.27 Aligned_cols=105 Identities=13% Similarity=0.090 Sum_probs=88.0
Q ss_pred ccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHh---cCChhHHHHHHHHHhccCCCCCchHHH
Q 047120 482 EPELQHYGCMVDILGRAGHIEAARNLIEDM-PME-PNDVIWRTLLSACRN---YENLNVGEPVAKHLIGMDSSNSSSYVL 556 (634)
Q Consensus 482 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~ 556 (634)
+-|...|..|...|.+.|+.+.|...|.+. .+. +++..+..+..++.. .....++..+++++++.+|.++.....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 456888999999999999999999999887 444 446677777776432 335688999999999999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhCCCccCC
Q 047120 557 LSNMFAGLGMWNDARRVRSMMKERNLKKLP 586 (634)
Q Consensus 557 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 586 (634)
|+..+...|++.+|...|+.|.+.....+|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999988776554
No 174
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.51 E-value=0.012 Score=49.54 Aligned_cols=132 Identities=14% Similarity=0.108 Sum_probs=101.5
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-C-----CCCCHH
Q 047120 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-P-----MEPNDV 518 (634)
Q Consensus 445 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~p~~~ 518 (634)
+.|+...-..|..+..+.|++.+|...|++... .-+..|....-.+.++....+++..|...++++ . ..||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence 467777778888889999999999999998876 344556777778888888999999999888876 2 23443
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
...+...+...|.++.|+..|+.++.-.|. +..-..++..+.++|+.+++..-+..+.+.
T Consensus 163 -~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 163 -HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred -hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 334566788889999999999999887763 556667788888999888887766655443
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.51 E-value=0.026 Score=53.80 Aligned_cols=95 Identities=11% Similarity=0.035 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhc-CcccC--hhH
Q 047120 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEP-----DDI-TFTGLLNACAHAGLVKEGLLCFELMRRIH-KLEPE--LQH 487 (634)
Q Consensus 417 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-----~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~--~~~ 487 (634)
+..++..+.+.|++++|.++|++........ +.. .|...+-++...|++..|.+.++...... ++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 4445555666666666666666655432211 111 22222334444556666666666554311 12112 222
Q ss_pred HHHHHHHHhc--cCCHHHHHHHHHhC
Q 047120 488 YGCMVDILGR--AGHIEAARNLIEDM 511 (634)
Q Consensus 488 ~~~l~~~~~~--~g~~~~A~~~~~~~ 511 (634)
...|+.++-. ...+++|+.-|+.+
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 3344444432 23455555555555
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.50 E-value=0.0016 Score=52.00 Aligned_cols=87 Identities=16% Similarity=0.049 Sum_probs=59.0
Q ss_pred HHHHHhccCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC---CCchHHHHHHHHh
Q 047120 491 MVDILGRAGHIEAARNLIEDM---PMEPN--DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS---NSSSYVLLSNMFA 562 (634)
Q Consensus 491 l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 562 (634)
+..++-..|+.++|+.+|++. +.... ...+-.+...+...|++++|..++++.+...|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455666777777777777765 22222 235556667777788888888888877777666 5556666777777
Q ss_pred cCCCchHHHHHHHHH
Q 047120 563 GLGMWNDARRVRSMM 577 (634)
Q Consensus 563 ~~g~~~~A~~~~~~~ 577 (634)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 788888877776554
No 177
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.47 E-value=0.0014 Score=64.43 Aligned_cols=124 Identities=12% Similarity=0.030 Sum_probs=84.0
Q ss_pred CCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhcccc--CCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCC
Q 047120 41 GFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAF--REKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVD 118 (634)
Q Consensus 41 ~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 118 (634)
+.+.+......+++......++ +++..++-+.... ....-..|.+++|+.|...|..+.+++++..=...|+-||
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~---d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D 137 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDL---DEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPD 137 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHH---HHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCC
Confidence 3444555566666666555554 6666666665432 1222234556888888888888888888888777888888
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 047120 119 KFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRC 167 (634)
Q Consensus 119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 167 (634)
..|++.+|..+.+.|++..|.++...|...+...++.++..-+.+|.+.
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888877777656666665555555444
No 178
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.46 E-value=0.0012 Score=50.51 Aligned_cols=80 Identities=11% Similarity=-0.004 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHHCCC-CCCcchHHHHHHHHhccC--------ChHHHHHHHHHHHHhcCCCChhHH
Q 047120 87 WNAIIKTYSHGLDPKEALVMFCLMLDNGV-SVDKFSASLVLKACSRLG--------LIEEGLQIHGLLRKVAFGSDLFLQ 157 (634)
Q Consensus 87 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 157 (634)
....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-..+.+|+.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666667899999999999999999 889999999998877543 234566788999999999999999
Q ss_pred HHHHHHHHh
Q 047120 158 NCLISLYVR 166 (634)
Q Consensus 158 ~~li~~~~~ 166 (634)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 998887654
No 179
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.45 E-value=0.12 Score=49.69 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=87.6
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 047120 385 HGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL 464 (634)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 464 (634)
+.+..+.-+...|+...|.++-.+..-|+..-|-..+.+++..++|++-..+... +-++..|..++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3344455566778888888888888888888888888888888888876665432 2245778888888888888
Q ss_pred HHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047120 465 VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACR 528 (634)
Q Consensus 465 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 528 (634)
..+|..+...+. +..-+..|.++|++.+|.+..-+. -|...+..+...+-
T Consensus 253 ~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~---kd~~~L~~i~~~~~ 302 (319)
T PF04840_consen 253 KKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE---KDIDLLKQILKRCP 302 (319)
T ss_pred HHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc---CCHHHHHHHHHHCC
Confidence 888888776632 134567788888888888776553 34555444444433
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.45 E-value=0.018 Score=53.09 Aligned_cols=56 Identities=9% Similarity=0.107 Sum_probs=45.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCCc---hHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSS---SYVLLSNMFAGLGMWNDARRVRSMMK 578 (634)
Q Consensus 523 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 578 (634)
+..-|.+.|.+.-|..-++.+++..|..+. +...++.+|...|..++|.++...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 445578889999999999999998877654 66777888999999999998887653
No 181
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.45 E-value=6.4e-05 Score=44.57 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=31.3
Q ss_pred HHHHHhccCCCCCchHHHHHHHHhcCCCchHHHH
Q 047120 539 VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARR 572 (634)
Q Consensus 539 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 572 (634)
+|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.43 E-value=0.0021 Score=55.88 Aligned_cols=99 Identities=12% Similarity=0.001 Sum_probs=45.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 047120 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSAC 527 (634)
Q Consensus 451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~ 527 (634)
.|..+...+...|++++|...++.+.....-.+ ...++..+..+|...|++++|++.+++. .+.|+ ..++..+...+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 334444444445555555555555543211011 1224445555555555555555555554 22222 22333333333
Q ss_pred H-------hcCChh-------HHHHHHHHHhccCCC
Q 047120 528 R-------NYENLN-------VGEPVAKHLIGMDSS 549 (634)
Q Consensus 528 ~-------~~g~~~-------~a~~~~~~~~~~~p~ 549 (634)
. ..|+++ +|..++++++..+|+
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 3 555555 455555556655554
No 183
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.049 Score=52.05 Aligned_cols=85 Identities=12% Similarity=-0.035 Sum_probs=59.1
Q ss_pred HHhHhcCCHHHHHHHHHhccCC-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc
Q 047120 391 DMYSKCGSIENAIKVFEQIEDG-------SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHA 462 (634)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 462 (634)
+-..+.|++..|.+.|.+.... +...|.....+..+.|+.++|+.--++..+ +.|. ...|..-..++...
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHH
Confidence 3456778888888888877632 333566666777788888888888777764 2333 22555555667778
Q ss_pred CCHHHHHHHHHHhHH
Q 047120 463 GLVKEGLLCFELMRR 477 (634)
Q Consensus 463 g~~~~a~~~~~~~~~ 477 (634)
++|++|.+-++.+.+
T Consensus 335 e~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888888888776
No 184
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.42 E-value=0.0011 Score=62.53 Aligned_cols=130 Identities=12% Similarity=0.014 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHH---hcCccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-------C-CCCCH
Q 047120 450 ITFTGLLNACAHAGLVKEGLLCFELMRR---IHKLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM-------P-MEPND 517 (634)
Q Consensus 450 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~ 517 (634)
..|..|.+.|.-.|++++|+...+.-.. .+|-.. ....+..|.+++.-.|+++.|.+.++.. + .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3566677777777888888876554221 133222 2345777888888888888888877654 1 12233
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccC----C--CCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMD----S--SNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
.+..+|..+|.-..+++.|+.++++=+.+. . .....+..|+.+|...|..++|..+.+...+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 455667777777778888888777655432 1 2234777888888888888888888776644
No 185
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.42 E-value=0.0002 Score=41.70 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 047120 416 HWNAMINGLAIHGLGELAFDLLMEMERLS 444 (634)
Q Consensus 416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g 444 (634)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777777665
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.40 E-value=0.0011 Score=61.64 Aligned_cols=93 Identities=9% Similarity=0.041 Sum_probs=58.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---CchHHHHHH
Q 047120 488 YGCMVDILGRAGHIEAARNLIEDM-PMEPND----VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN---SSSYVLLSN 559 (634)
Q Consensus 488 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 559 (634)
|...+..+.+.|++++|...|+.. ...|+. ..+..+...|...|++++|...|+++++..|++ ++.+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444445567777777776665 223332 355566666777777777777777777766654 345555566
Q ss_pred HHhcCCCchHHHHHHHHHHhC
Q 047120 560 MFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~ 580 (634)
++...|++++|..+++++.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777776544
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.39 E-value=0.00018 Score=51.42 Aligned_cols=57 Identities=14% Similarity=0.191 Sum_probs=28.4
Q ss_pred ccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHH
Q 047120 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVI 519 (634)
Q Consensus 461 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 519 (634)
+.|++++|+++|+.+.... +.+...+..++.+|.+.|++++|.++++++ ...|+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence 3455566666665555421 223444445555555555555555555555 33444333
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.39 E-value=0.00029 Score=50.54 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=50.1
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-ChhHHHHHHHHHhccCC
Q 047120 484 ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYE-NLNVGEPVAKHLIGMDS 548 (634)
Q Consensus 484 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 548 (634)
+...|..+...+.+.|++++|+..|++. ...|+ ...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777788888888888888888876 44454 557777888888888 68888888888888876
No 189
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.39 E-value=0.0052 Score=63.25 Aligned_cols=135 Identities=13% Similarity=0.038 Sum_probs=98.0
Q ss_pred CCCCCHHHHHHHHHHHhc-----cCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhcc--------CCHHHHHHHHH
Q 047120 444 SIEPDDITFTGLLNACAH-----AGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRA--------GHIEAARNLIE 509 (634)
Q Consensus 444 g~~p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 509 (634)
+...+...|...+++... .++...|..+|+++.+. .|+ ...|..+..+|... ++...+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345567788888776443 23477999999999873 566 44455544444322 22344555555
Q ss_pred hC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 510 DM----PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 510 ~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
+. ....++..|..+.-.....|++++|...++++++++| +...|..++.++...|+.++|.+.++++...+.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 43 1334567788777777778999999999999999999 578999999999999999999999999976654
No 190
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0058 Score=58.05 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=101.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHhHHhcCcccChhH------------
Q 047120 422 NGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN--ACAHAGLVKEGLLCFELMRRIHKLEPELQH------------ 487 (634)
Q Consensus 422 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------------ 487 (634)
.++...|++++|...--..++. .++ ..+..+++ ++.-.++.+.|...|++..+ +.|+...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl--d~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL--DAT-NAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc--ccc-hhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence 4556677777777766655543 222 12222222 33456677777777777654 2343222
Q ss_pred -HHHHHHHHhccCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 047120 488 -YGCMVDILGRAGHIEAARNLIEDM-PMEP-----NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560 (634)
Q Consensus 488 -~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 560 (634)
+..=.+-..+.|++.+|.+.+.+. .+.| +...|.....+..+.|+.++|+.-.+++++++|.-...|..-+.+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 122233456788888888888876 4444 445666666677788888888888888888888777777777888
Q ss_pred HhcCCCchHHHHHHHHHHhCC
Q 047120 561 FAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 561 ~~~~g~~~~A~~~~~~~~~~~ 581 (634)
+.-.++|++|.+.+++..+..
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 888888888888888776543
No 191
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.36 E-value=0.0056 Score=58.04 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHH
Q 047120 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA-CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494 (634)
Q Consensus 416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 494 (634)
+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 56667777777777888888888887532 2233445544444 23356666688888888874 34566778888888
Q ss_pred HhccCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 047120 495 LGRAGHIEAARNLIEDM-PMEPND----VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552 (634)
Q Consensus 495 ~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 552 (634)
+.+.|+.+.|..+|++. ..-|.. ..|...+..-.+.|+.+....+.+++.+..|.+..
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 88888888999888887 222332 48888888888889999999998888888776443
No 192
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.29 E-value=0.0018 Score=61.37 Aligned_cols=129 Identities=11% Similarity=0.122 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 047120 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR-AGHIEAARNLIEDM--PMEPNDVIWRTLLSA 526 (634)
Q Consensus 450 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 526 (634)
.+|..+++..-+.+..+.|..+|..+++... .+..+|...+..-.+ .++.+.|.++|+.+ ....+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4677888888888899999999999986322 234555555555334 56777799999987 445677888899999
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCC---chHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 527 CRNYENLNVGEPVAKHLIGMDSSNS---SSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
+.+.|+.+.|..+|++++..-|... ..|..++..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998876654 48889999999999999999999998764
No 193
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.29 E-value=0.00059 Score=64.31 Aligned_cols=94 Identities=13% Similarity=0.058 Sum_probs=72.5
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHh-------CCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhc----cC--CCCC
Q 047120 486 QHYGCMVDILGRAGHIEAARNLIED-------MPME-PNDVIWRTLLSACRNYENLNVGEPVAKHLIG----MD--SSNS 551 (634)
Q Consensus 486 ~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~--p~~~ 551 (634)
..|..|.+.|.-.|+++.|+..-+. .+.+ .....+..+..++.-.|+++.|.+.|++.+. ++ ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4578888888899999999876442 2322 2245788888899999999999999988754 33 2345
Q ss_pred chHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 552 SSYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
...+.|++.|.-...+++|+.++.+-..
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLa 303 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLA 303 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999987643
No 194
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.29 E-value=0.011 Score=49.06 Aligned_cols=94 Identities=11% Similarity=-0.004 Sum_probs=60.5
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 047120 385 HGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461 (634)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 461 (634)
....+...+...|++++|.++|+.+. ..+..-|..|..++-..|++++|+..|........ -|+..+-.+..++..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 33345555666677777777777654 22445666677777777777777777777766431 235566667777777
Q ss_pred cCCHHHHHHHHHHhHHhc
Q 047120 462 AGLVKEGLLCFELMRRIH 479 (634)
Q Consensus 462 ~g~~~~a~~~~~~~~~~~ 479 (634)
.|+.+.|.+.|+.+....
T Consensus 116 lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 777777777777766533
No 195
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.28 E-value=0.2 Score=48.59 Aligned_cols=80 Identities=8% Similarity=-0.067 Sum_probs=51.9
Q ss_pred CCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHH
Q 047120 116 SVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI--RDSVSYNSMID 193 (634)
Q Consensus 116 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 193 (634)
+-|..+|-.|+.-+..++..++.++++++|..- ++.-+.+|..-+++-....++...+.+|.+... -+...|...+.
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl~ 117 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYLE 117 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHHH
Confidence 345567888888888888888888888887542 233344666666665666777777777776543 25556665555
Q ss_pred HHH
Q 047120 194 GYV 196 (634)
Q Consensus 194 ~~~ 196 (634)
--.
T Consensus 118 YIR 120 (660)
T COG5107 118 YIR 120 (660)
T ss_pred HHH
Confidence 433
No 196
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.28 E-value=0.18 Score=47.97 Aligned_cols=247 Identities=15% Similarity=0.158 Sum_probs=154.1
Q ss_pred HHcCCchHHHHHHHHHHhcCCCCCCHh--HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHH
Q 047120 323 VRNGYSMKALEIFDNMQCELYLHPDDA--SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIE 400 (634)
Q Consensus 323 ~~~g~~~~A~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 400 (634)
.-.|+++.|.+-|+.|... |... -...|.-...+.|+.+.|..+-+..-..- +.-.......+...+..|+++
T Consensus 131 l~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred HhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChH
Confidence 3457777777777777632 3322 22233333456677777766666554432 223455666777777777777
Q ss_pred HHHHHHHhcc-----CCChh--HHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHH
Q 047120 401 NAIKVFEQIE-----DGSVD--HWNAMINGLAI---HGLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGLVKEGL 469 (634)
Q Consensus 401 ~A~~~~~~~~-----~~~~~--~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~ 469 (634)
.|+++.+.-. ++++. .--.|+.+-.. ..+...|...-.+..+ +.||.. .-.....++.+.|+..++-
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhh
Confidence 7777776433 23322 11222222111 1235555555555443 577754 4556677899999999999
Q ss_pred HHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047120 470 LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM----PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLI 544 (634)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 544 (634)
.+++.+-+. .|.+.++. ...+.+.|+.. +.-+++. .++|| ..+...+..+-...|++..|..--+.+.
T Consensus 284 ~ilE~aWK~---ePHP~ia~--lY~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 284 KILETAWKA---EPHPDIAL--LYVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred hHHHHHHhc---CCChHHHH--HHHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 999999873 55555543 33455666533 2222222 34555 5567777888888999999998888888
Q ss_pred ccCCCCCchHHHHHHHHhc-CCCchHHHHHHHHHHhCCCcc
Q 047120 545 GMDSSNSSSYVLLSNMFAG-LGMWNDARRVRSMMKERNLKK 584 (634)
Q Consensus 545 ~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~ 584 (634)
...|. ...|..|+++-.. .|+-.++.+.+-+..+....+
T Consensus 357 r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 357 REAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred hhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 77774 4688888888665 499999999998887775543
No 197
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.27 E-value=0.0037 Score=47.95 Aligned_cols=79 Identities=18% Similarity=0.174 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhHHhcCcccChhHH
Q 047120 418 NAMINGLAIHGLGELAFDLLMEMERLSI-EPDDITFTGLLNACAHAG--------LVKEGLLCFELMRRIHKLEPELQHY 488 (634)
Q Consensus 418 ~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 488 (634)
...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++.+.+.+|+.|.. .+++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHHH
Confidence 3455666667999999999999999999 899999999999877643 45567788888887 6889999999
Q ss_pred HHHHHHHhc
Q 047120 489 GCMVDILGR 497 (634)
Q Consensus 489 ~~l~~~~~~ 497 (634)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 988877654
No 198
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.29 Score=50.67 Aligned_cols=115 Identities=10% Similarity=0.072 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047120 447 PDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSA 526 (634)
Q Consensus 447 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 526 (634)
....+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..++|++-+++-+... .+.-|.-...+
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~ 753 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEA 753 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHH
Confidence 334455555666677788888887766553 4777777777888888888888887777653 24556667788
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHH
Q 047120 527 CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577 (634)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 577 (634)
|.+.|+.++|.+++-+.- -+.....+|.+.|++.+|.+.--+-
T Consensus 754 c~~~~n~~EA~KYiprv~--------~l~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVG--------GLQEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHhcccHHHHhhhhhccC--------ChHHHHHHHHHhccHHHHHHHHHHh
Confidence 888888888887775531 1126778888888888888765443
No 199
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.21 E-value=0.029 Score=54.20 Aligned_cols=160 Identities=17% Similarity=0.089 Sum_probs=90.7
Q ss_pred HHHHHhHhcCCHHHHHHHHHhccCC-------ChhHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047120 388 ALIDMYSKCGSIENAIKVFEQIEDG-------SVDHWNAMINGLAI---HGLGELAFDLLMEMERLSIEPDDITFTGLLN 457 (634)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 457 (634)
.++-.|....+++..+++++.+... ....-...+-++.+ .|+.++|+.++..+....-.+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444455566666666666665532 12222233445555 6777777777777555555666667766665
Q ss_pred HHhc---------cCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHH----HHHHHH---Hh-C------CCC
Q 047120 458 ACAH---------AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIE----AARNLI---ED-M------PME 514 (634)
Q Consensus 458 ~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~-~------~~~ 514 (634)
.|-. ....++|+..|.+.-. +.|+...--.++..+...|... +..++- .. . .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5431 2346777777776643 3455433222222333333211 222221 11 1 123
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047120 515 PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550 (634)
Q Consensus 515 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (634)
.|-..+.+++.++.-.|++++|.+.+++++++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 456677788888888999999999999999887543
No 200
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.18 E-value=0.33 Score=49.13 Aligned_cols=181 Identities=13% Similarity=0.096 Sum_probs=118.7
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhccCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047120 382 NGKHGVALIDMYSKCGSIENAIKVFEQIEDGS---VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA 458 (634)
Q Consensus 382 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 458 (634)
+...|...+..-.+.|+.+.+.-+|+++.-+- ...|-..+.-....|+.+-|..++....+--.+-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 45677777888888899999999998887442 224444444444558888888777766554333233333223333
Q ss_pred HhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHH---HHHHhC-CCCCCHHH----HHHHHHH-HH
Q 047120 459 CAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAAR---NLIEDM-PMEPNDVI----WRTLLSA-CR 528 (634)
Q Consensus 459 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~----~~~l~~~-~~ 528 (634)
+...|++..|..+++.+... . |+ +..-..-+....+.|..+.+. +++... ..+.+... +...... +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 55678999999999999873 3 55 223333455667888888887 444443 21222222 2222222 34
Q ss_pred hcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCC
Q 047120 529 NYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565 (634)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 565 (634)
-.++.+.|..++.++.+..|++-..|..++......+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 5789999999999999999999999999988877665
No 201
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.17 E-value=0.0014 Score=63.76 Aligned_cols=62 Identities=11% Similarity=0.029 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047120 485 LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPND----VIWRTLLSACRNYENLNVGEPVAKHLIGM 546 (634)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 546 (634)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|++++|+..++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444555556666666666666666554 444542 23555555566666666666666666554
No 202
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.16 E-value=0.00053 Score=43.74 Aligned_cols=42 Identities=17% Similarity=0.378 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHH
Q 047120 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559 (634)
Q Consensus 518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 559 (634)
.+|..+..+|...|++++|+++++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788899999999999999999999999999999988875
No 203
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.48 Score=49.21 Aligned_cols=86 Identities=13% Similarity=0.120 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHhCCCh--HHHHHHH-hhCccCCCChhHHHHHHHHHHhcC
Q 047120 159 CLISLYVRCGYLEFARQLFDKMGIRD---SVSYNSMIDGYVKSGNI--ESARELF-DSMPIRERNLISWNSVLNGYAQLK 232 (634)
Q Consensus 159 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~--~~A~~~~-~~m~~~~p~~~~~~~ll~~~~~~~ 232 (634)
.+++-+...+.+..|+++-+.+..|. ...|.....-+.+..+. +++++.+ +++.....+..+|..+.......|
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 34555666677777777777666553 34455555555554322 2222222 222221233345555555555556
Q ss_pred CcHHHHHHHHhhC
Q 047120 233 SGLQFAWQIFEKM 245 (634)
Q Consensus 233 ~~~~~a~~~~~~~ 245 (634)
. .+.|..+++.=
T Consensus 522 R-~~LA~kLle~E 533 (829)
T KOG2280|consen 522 R-FELARKLLELE 533 (829)
T ss_pred c-HHHHHHHHhcC
Confidence 6 66666666543
No 204
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.08 E-value=0.0051 Score=60.68 Aligned_cols=114 Identities=11% Similarity=0.109 Sum_probs=91.6
Q ss_pred hHHHHHHhccCchHHHHHHHHHHHhCCCCch-----hhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHH
Q 047120 16 STLLLLRKCKTLNDVNQIHARMITTGFIKNT-----HLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAI 90 (634)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 90 (634)
-+-.+...|.+.+++..+-..+.+....|.. .+..++|+.|.+.|.. +++..++..=...|+-||..++|.|
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~---~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAE---DELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCH---HHHHHHHhChhhcccCCChhhHHHH
Confidence 3444566677766655555555555444332 3557999999999998 9999999988889999999999999
Q ss_pred HHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhcc
Q 047120 91 IKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRL 132 (634)
Q Consensus 91 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 132 (634)
|..+.+.|++..|.+++..|...+...+..|+...+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999998888888888888888877764
No 205
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.04 E-value=0.49 Score=48.60 Aligned_cols=196 Identities=14% Similarity=0.123 Sum_probs=114.8
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCh------------hHHHHHHHHHHhCCChHHHHHHHhhCccCCCC
Q 047120 151 GSDLFLQNCLISLYVRCGYLEFARQLFDKMGI-RDS------------VSYNSMIDGYVKSGNIESARELFDSMPIRERN 217 (634)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~ 217 (634)
.|.+..|..|.......-+++.|+..|-+... +.+ ..-.+=|.+| -|++++|.++|-+|.+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 57888898888877777788888888766542 111 1112223333 478888888888776631
Q ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHhhCCC-----CCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHH
Q 047120 218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPE-----RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYA 292 (634)
Q Consensus 218 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 292 (634)
..+..+.+.|+ .-...++++..-. .-...|+.+.+.+.....|++|.+.|..-.. ....+.+|.
T Consensus 765 -----LAielr~klgD-wfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~ecly 833 (1189)
T KOG2041|consen 765 -----LAIELRKKLGD-WFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIECLY 833 (1189)
T ss_pred -----hhHHHHHhhhh-HHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHHHHH
Confidence 23344444455 5555555544332 1124677777777777777777776664321 123445555
Q ss_pred HcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHH
Q 047120 293 KLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372 (634)
Q Consensus 293 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 372 (634)
+..++++-+.+-+.+++. ....-.+...+...|..++|.+.|-+-- .| ...+..|...+++.+|.++-+
T Consensus 834 ~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s-----~p-----kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 834 RLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRS-----LP-----KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhcc-----Cc-----HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555443 3345566777777787777777664332 12 234556666677777666544
No 206
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.03 E-value=0.13 Score=52.13 Aligned_cols=86 Identities=10% Similarity=-0.028 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHH----------
Q 047120 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDV---------- 518 (634)
Q Consensus 450 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~---------- 518 (634)
.+...+..-+.+...+.-|-++|.+|-. ...+++.+...++|++|..+-++. ...||..
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 3444444445555566666666666533 124566677777777777777766 2334332
Q ss_pred -HHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047120 519 -IWRTLLSACRNYENLNVGEPVAKHLIG 545 (634)
Q Consensus 519 -~~~~l~~~~~~~g~~~~a~~~~~~~~~ 545 (634)
-|...-.+|.+.|+-.+|.++++++-.
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122233456677788888888877653
No 207
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.02 E-value=0.028 Score=44.91 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=57.0
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCCCC--HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CchhHHHHHHHH
Q 047120 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPD--DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS--LNGKHGVALIDM 392 (634)
Q Consensus 317 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~ 392 (634)
.+..++-..|+.++|+.+|++.... |...+ ...+..+...+...|++++|..+++........ .+......+.-+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 3455666777777777777777765 54443 234555666667777777777777766653211 022222223334
Q ss_pred hHhcCCHHHHHHHHHhccCCChhHHHHHH
Q 047120 393 YSKCGSIENAIKVFEQIEDGSVDHWNAMI 421 (634)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li 421 (634)
+...|+.++|++.+-....++...|..-|
T Consensus 85 L~~~gr~~eAl~~~l~~la~~~~~y~ra~ 113 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAETLPRYRRAI 113 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666655443333333333333
No 208
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.01 E-value=0.53 Score=48.37 Aligned_cols=217 Identities=16% Similarity=0.098 Sum_probs=131.6
Q ss_pred HHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHC-CCCCCcc--------hHHHHHHHHhccCChH
Q 047120 66 EFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDN-GVSVDKF--------SASLVLKACSRLGLIE 136 (634)
Q Consensus 66 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~--------~~~~ll~~~~~~~~~~ 136 (634)
++|.+..+. .|-+..|..+...-...-.++.|...|-+...- |++.-.. .-.+=+. +--|.++
T Consensus 680 edA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~fe 751 (1189)
T KOG2041|consen 680 EDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFE 751 (1189)
T ss_pred HHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchh
Confidence 666665553 355667888877776666777777666554331 2211111 0011111 2247888
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----ChhHHHHHHHHHHhCCChHHHHHHHhhC
Q 047120 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-----DSVSYNSMIDGYVKSGNIESARELFDSM 211 (634)
Q Consensus 137 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m 211 (634)
+|+++|-++.++. .-|..+.+.||+-.+.++++.=... -...|+.+...++....|++|.+.|..-
T Consensus 752 eaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 752 EAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred Hhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888887776543 2356677888888888887654332 1347888888898888999999888765
Q ss_pred ccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHH
Q 047120 212 PIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGY 291 (634)
Q Consensus 212 ~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 291 (634)
... ...+.++.+... +++...+...+++ |....-.+.+.+.+.|.-++|.+.+-+-..|.. .+..+
T Consensus 823 ~~~-------e~~~ecly~le~-f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-----Av~tC 888 (1189)
T KOG2041|consen 823 GDT-------ENQIECLYRLEL-FGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-----AVHTC 888 (1189)
T ss_pred cch-------HhHHHHHHHHHh-hhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhccCcHH-----HHHHH
Confidence 432 224455555444 5555555555443 333445566777778888888777766554432 34455
Q ss_pred HHcCChHHHHHHhhhCCCCChh
Q 047120 292 AKLGRVDIARRLFDEMPKRDVV 313 (634)
Q Consensus 292 ~~~g~~~~A~~~~~~~~~~~~~ 313 (634)
...++|.+|.++-+...-|.+.
T Consensus 889 v~LnQW~~avelaq~~~l~qv~ 910 (1189)
T KOG2041|consen 889 VELNQWGEAVELAQRFQLPQVQ 910 (1189)
T ss_pred HHHHHHHHHHHHHHhccchhHH
Confidence 6667777777776666544443
No 209
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.99 E-value=0.35 Score=46.08 Aligned_cols=299 Identities=14% Similarity=0.071 Sum_probs=175.1
Q ss_pred HHHHHHHHhccccCCCCCcccHHHHHHHHHc--CCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHh--ccCChHHHHHH
Q 047120 66 EFARYIFFKYHAFREKKDPFLWNAIIKTYSH--GLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS--RLGLIEEGLQI 141 (634)
Q Consensus 66 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~ 141 (634)
..+.+.|..-++ -.-|..|-.++.- .|+-..|..+-.+-.+ -+..|...+..++.+-. -.|+++.|.+-
T Consensus 70 ~t~~Ryfr~rKR------drgyqALStGliAagAGda~lARkmt~~~~~-llssDqepLIhlLeAQaal~eG~~~~Ar~k 142 (531)
T COG3898 70 YTARRYFRERKR------DRGYQALSTGLIAAGAGDASLARKMTARASK-LLSSDQEPLIHLLEAQAALLEGDYEDARKK 142 (531)
T ss_pred HHHHHHHHHHHh------hhHHHHHhhhhhhhccCchHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHhcCchHHHHHH
Confidence 445555555431 1235565555554 4677777776665442 24566777777776544 57999999999
Q ss_pred HHHHHHhcCCCChhH--HHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHhhCccC--
Q 047120 142 HGLLRKVAFGSDLFL--QNCLISLYVRCGYLEFARQLFDKMGI--R-DSVSYNSMIDGYVKSGNIESARELFDSMPIR-- 214 (634)
Q Consensus 142 ~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 214 (634)
|+-|.. .|.... ...|.----+.|+.+.|...-+..-. | -...+...+...+..|+|+.|+++++.-...
T Consensus 143 feAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v 219 (531)
T COG3898 143 FEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV 219 (531)
T ss_pred HHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 999976 222222 22333333567888888888777643 2 3347788899999999999999999876554
Q ss_pred -CCChhH--HHHHHHH--HHhcCCcHHHHHHHHhhCCC--CCchHHH-HHHHHHHhcCChHHHHHHHhhCCCCChhHHHH
Q 047120 215 -ERNLIS--WNSVLNG--YAQLKSGLQFAWQIFEKMPE--RDLISWN-SMLHGCVKCGKMDDAQALFDKMPKRDVVSWAN 286 (634)
Q Consensus 215 -~p~~~~--~~~ll~~--~~~~~~~~~~a~~~~~~~~~--~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 286 (634)
.++..- -..|+.+ ......+...|.+.-.+..+ ||...-. .-..++.+.|+..++-.+++.+-+..++.--.
T Consensus 220 ie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia 299 (531)
T COG3898 220 IEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA 299 (531)
T ss_pred hchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH
Confidence 344321 1222222 22222224445544444433 4443322 23456777888888888887776544333333
Q ss_pred HHHHHHHcCChHHH----HHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHH-cc
Q 047120 287 MIDGYAKLGRVDIA----RRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA-QL 361 (634)
Q Consensus 287 l~~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~-~~ 361 (634)
++..+.+.|+.... .+-+..|+..+..+...+..+-...|++..|..--+... ...|....|..+...-. ..
T Consensus 300 ~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAet 376 (531)
T COG3898 300 LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAET 376 (531)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhcc
Confidence 34444555553221 123455555666666666677777777776666665555 34666666666655543 34
Q ss_pred CChHHHHHHHHHHHHc
Q 047120 362 GHIDKGVAIHRYLEKD 377 (634)
Q Consensus 362 ~~~~~a~~~~~~~~~~ 377 (634)
||-.++...+.+..+.
T Consensus 377 GDqg~vR~wlAqav~A 392 (531)
T COG3898 377 GDQGKVRQWLAQAVKA 392 (531)
T ss_pred CchHHHHHHHHHHhcC
Confidence 6777766666666553
No 210
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.98 E-value=0.028 Score=49.07 Aligned_cols=118 Identities=22% Similarity=0.213 Sum_probs=79.4
Q ss_pred CCCHhHHHHHHHHHH-----ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHH
Q 047120 345 HPDDASLVIVLSAIA-----QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNA 419 (634)
Q Consensus 345 ~p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 419 (634)
..+..+|..++..+. +.|..+-....++.|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~----------- 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQA----------- 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHH-----------
Confidence 456667777777664 346777777888889999999999999999988764 3221 1111111
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhHH
Q 047120 420 MINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLV-KEGLLCFELMRR 477 (634)
Q Consensus 420 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 477 (634)
+-.- ...+-+-|++++++|...|+-||..|+..+++.+.+.+.. .+..++.--|.+
T Consensus 111 ~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 111 EFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred Hhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 1111 1234577899999999999999999999999998877653 334444444444
No 211
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.98 E-value=0.19 Score=46.35 Aligned_cols=63 Identities=10% Similarity=0.007 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhH----HHHHHHHHHccCChHHHHHHHHHHHHc
Q 047120 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS----LVIVLSAIAQLGHIDKGVAIHRYLEKD 377 (634)
Q Consensus 312 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~ 377 (634)
...+-.....+...|++++|++.|+.+... .|+... .-.+..++.+.++++.|...+++.++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~---yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNR---YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333334445556667777777777777643 333211 123444555666666666666655553
No 212
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.97 E-value=0.19 Score=42.61 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=51.4
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhcc----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHH
Q 047120 382 NGKHGVALIDMYSKCGSIENAIKVFEQIE----DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD---DITFTG 454 (634)
Q Consensus 382 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~ 454 (634)
+...-..|..++.+.|+..+|...|++.. ..|....-.+..+....+++..|...++++.+.. |+ +.+...
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~Ll 165 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGHLL 165 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCchHH
Confidence 33333334444444444444444444332 1234444444444444455555555555544431 21 122333
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHH
Q 047120 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAAR 505 (634)
Q Consensus 455 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 505 (634)
+.+.+...|.+.+|...|+.+..- -|+...-......+.++|+.++|.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHH
Confidence 444455555555555555555441 233333333334445555444443
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.96 E-value=0.0079 Score=55.90 Aligned_cols=102 Identities=6% Similarity=0.017 Sum_probs=69.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 047120 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN----DVIWRTLL 524 (634)
Q Consensus 451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 524 (634)
.|...+....+.|++++|...|+.+.+.+.-.+- ...+..++.+|...|++++|...|+.+ ...|+ ...+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 4555444445667888888888887764321110 235667778888888888888888877 22233 34555566
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCCc
Q 047120 525 SACRNYENLNVGEPVAKHLIGMDSSNSS 552 (634)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 552 (634)
..+...|+.++|...|+++++..|.+..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 6677889999999999999998887653
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.90 E-value=0.0028 Score=45.99 Aligned_cols=64 Identities=11% Similarity=0.197 Sum_probs=48.1
Q ss_pred HHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHH
Q 047120 493 DILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556 (634)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 556 (634)
..|.+.+++++|.++++.+ ...|+ ...|......+...|++++|.+.++++++..|.++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 5677888888888888887 44454 5566677777888888888888888888888877655433
No 215
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.086 Score=47.21 Aligned_cols=138 Identities=13% Similarity=0.018 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcC-----CCCchhHHH
Q 047120 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ-----FSLNGKHGV 387 (634)
Q Consensus 313 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~ 387 (634)
.+.+.++..+.-.|.+.-.+..+++..+. .-.-++.....+++...+.||.+.|..+++...+.. ......+..
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 34556677777788888889999999875 334466777888888889999999999999777643 333333334
Q ss_pred HHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 047120 388 ALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453 (634)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 453 (634)
.....|.-.+++..|...|.++.. .++..-|.-.-+..-.|+..+|++.++.|... .|...+-+
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 444556778889999999988873 35556666666666678999999999999875 56554433
No 216
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.82 E-value=0.044 Score=49.19 Aligned_cols=49 Identities=10% Similarity=0.059 Sum_probs=35.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCCc---hHHHHHHHHhcCCCchHHH
Q 047120 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSS---SYVLLSNMFAGLGMWNDAR 571 (634)
Q Consensus 523 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 571 (634)
+...|.+.|.+..|..-++.+++..|+.+. ....++..|.+.|..+.+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 445578888899999999999888887655 4566777788888877443
No 217
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.036 Score=50.99 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=80.6
Q ss_pred CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhcc---CCHHHHHHHHHhC-CCCCCH-HH
Q 047120 446 EP-DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA---GHIEAARNLIEDM-PMEPND-VI 519 (634)
Q Consensus 446 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~-~~~p~~-~~ 519 (634)
.| |...|..|...|...|+++.|...|..+.+..|- +...+..+..++... ....++.++|+++ ..+|+. .+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~--n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD--NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 44 4679999999999999999999999999885443 455565666655433 2456788999998 556664 45
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 047120 520 WRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552 (634)
Q Consensus 520 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 552 (634)
...|...+...|++.+|...++.+++..|.+..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 566667789999999999999999999987654
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.76 E-value=0.0016 Score=48.05 Aligned_cols=62 Identities=10% Similarity=0.165 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccC----CCC---CchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMD----SSN---SSSYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
.+++.+...|...|++++|+..++++++.. +.. ..++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677777777888888888877777542 221 33677788888888888888888877643
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.16 Score=45.56 Aligned_cols=135 Identities=14% Similarity=0.097 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----cccChhHHHHH
Q 047120 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK----LEPELQHYGCM 491 (634)
Q Consensus 416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l 491 (634)
..+.++......|.+.-.+..+.+.++.....++.....|.+.-.+.|+.+.|..+|+...+..+ +.-...+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44566777777788888888888888865555677788888888899999999999987765322 22222222233
Q ss_pred HHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047120 492 VDILGRAGHIEAARNLIEDMP-MEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550 (634)
Q Consensus 492 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (634)
...|.-++++..|...++++. .+| |+...|.-.-...-.|+...|++..+.++++.|..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 344566677778888887772 222 33333433333444678888888888888777653
No 220
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.69 E-value=0.04 Score=43.59 Aligned_cols=140 Identities=11% Similarity=0.098 Sum_probs=89.7
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHH
Q 047120 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504 (634)
Q Consensus 425 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 504 (634)
.-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+.+ |. ..+|+....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF----Di----------s~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIF----DI----------SKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-----G----------GG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhc----Cc----------hhhcchHHH
Confidence 4467788888888887752 345567777766666666666666666665522 21 234444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCc
Q 047120 505 RNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583 (634)
Q Consensus 505 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (634)
...+-.++ .+.......+......|.-+.-.+++..+.+.+..+|....-++.+|.+.|+..++.++++++=+.|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44444443 344455667778889999999999999998877889999999999999999999999999999998874
No 221
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.67 E-value=0.023 Score=49.59 Aligned_cols=96 Identities=18% Similarity=0.327 Sum_probs=66.8
Q ss_pred HHHHhc--cCCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------------
Q 047120 404 KVFEQI--EDGSVDHWNAMINGLAIH-----GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA-------------- 462 (634)
Q Consensus 404 ~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-------------- 462 (634)
..|+.. ...+-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.|+..+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 345666666677666543 55666667788888889888899999998877542
Q ss_pred --CCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC
Q 047120 463 --GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500 (634)
Q Consensus 463 --g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 500 (634)
.+-+-|++++++|.. +|+.||.+++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234567777777777 6777777777777777776664
No 222
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.67 E-value=0.71 Score=44.98 Aligned_cols=132 Identities=17% Similarity=0.122 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHH-HHHH
Q 047120 415 DHWNAMINGLAIHGLGELAFDLLMEMERLS-IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY-GCMV 492 (634)
Q Consensus 415 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~ 492 (634)
.+|-..+..-.+..-.+.|..+|-+..+.| +.++...++.++.-++ .|+...|.++|+.-... .||...| +..+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHH
Confidence 355666666666667777888888888777 4566667777776554 56667777777765542 3444443 3455
Q ss_pred HHHhccCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047120 493 DILGRAGHIEAARNLIEDM--PMEPN--DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550 (634)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (634)
..+.+.++-+.|..+|+.. .+..+ ...|..++.--..-|++..+..+-+++.+..|..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 6667778888888888755 22233 4577777777777788877777777777777653
No 223
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.64 E-value=0.46 Score=42.62 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 047120 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPD-DASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377 (634)
Q Consensus 317 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 377 (634)
.....+...|++.+|+..|+.+.....-.|- ......++.++-+.|+++.|...++..++.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445556667777777777777654211111 123444555556666666666666665543
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.56 E-value=0.0029 Score=46.60 Aligned_cols=59 Identities=10% Similarity=0.165 Sum_probs=33.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhC-----CCC---CC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047120 487 HYGCMVDILGRAGHIEAARNLIEDM-----PME---PN-DVIWRTLLSACRNYENLNVGEPVAKHLIG 545 (634)
Q Consensus 487 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 545 (634)
+|+.+...|.+.|++++|++.+++. ... |+ ..++..+...+...|++++|++.++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455555555555555555555544 011 22 33566666667777777777777777654
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.51 E-value=0.013 Score=57.45 Aligned_cols=63 Identities=6% Similarity=-0.153 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCch---HHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS---YVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 517 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
...++.+..+|.+.|++++|+..++++++++|+++.. |++++.+|..+|+.++|++.++++.+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444422 44444444444444444444444444
No 226
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.51 E-value=0.93 Score=44.34 Aligned_cols=139 Identities=12% Similarity=0.146 Sum_probs=84.2
Q ss_pred HHhccCchHHHHHHHHHHHhCCCC-c----hhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHH-
Q 047120 21 LRKCKTLNDVNQIHARMITTGFIK-N----THLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTY- 94 (634)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~- 94 (634)
|+.-++..+++.|+..+.+..-.. . -..-++++++|.-.+- +.....+..+.+. .| ...|-.+..++
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nl----d~Me~~l~~l~~~--~~-~s~~l~LF~~L~ 88 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNL----DLMEKQLMELRQQ--FG-KSAYLPLFKALV 88 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhH----HHHHHHHHHHHHh--cC-CchHHHHHHHHH
Confidence 455566777777777777654222 1 1345788999876553 4444444444322 23 23344444433
Q ss_pred -HcCCCcchHHHHHHHHHHC--CCCC---Cc---------chHHHHHHHHhccCChHHHHHHHHHHHHhcCC----CChh
Q 047120 95 -SHGLDPKEALVMFCLMLDN--GVSV---DK---------FSASLVLKACSRLGLIEEGLQIHGLLRKVAFG----SDLF 155 (634)
Q Consensus 95 -~~~g~~~~A~~~~~~m~~~--g~~p---~~---------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~ 155 (634)
-+.+++++|++.+....++ +..| |. .-=+..+.++...|.+.+++.+++++...=++ -+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 2568899999888777654 3222 11 11133455677899999999999888765443 6788
Q ss_pred HHHHHHHHHHh
Q 047120 156 LQNCLISLYVR 166 (634)
Q Consensus 156 ~~~~li~~~~~ 166 (634)
+|+.++-++++
T Consensus 169 ~yd~~vlmlsr 179 (549)
T PF07079_consen 169 MYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhH
Confidence 88887766654
No 227
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.4 Score=42.67 Aligned_cols=86 Identities=14% Similarity=0.098 Sum_probs=44.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccC----CCCCchHH
Q 047120 488 YGCMVDILGRAGHIEAARNLIEDMP-------MEPND-VIWRTLLSACRNYENLNVGEPVAKHLIGMD----SSNSSSYV 555 (634)
Q Consensus 488 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----p~~~~~~~ 555 (634)
+..+...|.+...+++|-..+.+-+ .-|+. ..|...+-.+....|+..|++.++.-.+.. |.+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 4444555666666666655544431 11222 234444445555667777777776654443 34444555
Q ss_pred HHHHHHhcCCCchHHHHHH
Q 047120 556 LLSNMFAGLGMWNDARRVR 574 (634)
Q Consensus 556 ~l~~~~~~~g~~~~A~~~~ 574 (634)
.|...| ..|+.+++.+++
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 555554 356666555544
No 228
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.028 Score=53.82 Aligned_cols=95 Identities=7% Similarity=0.022 Sum_probs=79.4
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhc
Q 047120 486 QHYGCMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563 (634)
Q Consensus 486 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 563 (634)
.++..|.-+|.+.+++.+|+....+. .. ++|.....--..+|...|+++.|+..|+++++..|.|-.+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45778889999999999999998887 33 45677777788899999999999999999999999999999999888777
Q ss_pred CCCchH-HHHHHHHHHhC
Q 047120 564 LGMWND-ARRVRSMMKER 580 (634)
Q Consensus 564 ~g~~~~-A~~~~~~~~~~ 580 (634)
...+.+ ..++|.+|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 665554 58888888543
No 229
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.43 E-value=0.077 Score=49.77 Aligned_cols=122 Identities=14% Similarity=0.106 Sum_probs=52.3
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCccc----ChhHHHHHHHHHhccCCHHHHHHHHHhC-------CCCCCHH-----
Q 047120 455 LLNACAHAGLVKEGLLCFELMRRIHKLEP----ELQHYGCMVDILGRAGHIEAARNLIEDM-------PMEPNDV----- 518 (634)
Q Consensus 455 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~----- 518 (634)
+..++...+.++++++.|+.+.+...-.. ...++..|...|.+..++++|.-+..++ +++.=..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44444445555555555555443111111 1233555555555555555554443332 1111011
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccC--CCC----CchHHHHHHHHhcCCCchHHHHHHHH
Q 047120 519 IWRTLLSACRNYENLNVGEPVAKHLIGMD--SSN----SSSYVLLSNMFAGLGMWNDARRVRSM 576 (634)
Q Consensus 519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 576 (634)
....+.-++...|.+..|.+..+++.++. ..| ......++++|-..|+.+.|+.-++.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 11222334455555555555555554432 111 11233455555555555555554443
No 230
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.39 E-value=0.027 Score=44.34 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=69.3
Q ss_pred HHHhccCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC----chHHHHHHHHhcCCC
Q 047120 493 DILGRAGHIEAARNLIEDM-P-MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS----SSYVLLSNMFAGLGM 566 (634)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 566 (634)
-++...|+.+.|++.|.+. . .+.....|+.-..++.-.|+.++|..-+++++++..+.. ..|..-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3566788888888888776 2 334577888888888888888888888888888864332 256667778888888
Q ss_pred chHHHHHHHHHHhCCCc
Q 047120 567 WNDARRVRSMMKERNLK 583 (634)
Q Consensus 567 ~~~A~~~~~~~~~~~~~ 583 (634)
-+.|..-|+...+.|-+
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 88898888888777653
No 231
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.28 E-value=1.6 Score=44.50 Aligned_cols=382 Identities=11% Similarity=0.034 Sum_probs=199.6
Q ss_pred HHHHHHHHhccccCCCCCc-ccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHh-ccCChHHHHHHHH
Q 047120 66 EFARYIFFKYHAFREKKDP-FLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS-RLGLIEEGLQIHG 143 (634)
Q Consensus 66 ~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~ 143 (634)
..++.+++.+... .|.. .-|-....-=.+-|..+.+..+|++-.. |++.+...|...+.-+. ..|+.+.....|+
T Consensus 62 ~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 62 DALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 5566666665522 3333 2344555555566788888888888776 56656666665555444 5567777777777
Q ss_pred HHHHh-cCC-CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHh---CC------ChHHHHHHHhhCc
Q 047120 144 LLRKV-AFG-SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVK---SG------NIESARELFDSMP 212 (634)
Q Consensus 144 ~~~~~-g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~g------~~~~A~~~~~~m~ 212 (634)
.+... |.. .....|...|..-..++++.....+++++.+-....|+....-|.+ .. ..+++.++-....
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~ 218 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVA 218 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHH
Confidence 77653 322 2344677777777777888888888888766444444444333322 11 1222222211111
Q ss_pred cC------CCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCC--------
Q 047120 213 IR------ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK-------- 278 (634)
Q Consensus 213 ~~------~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------- 278 (634)
.. .+........+.-.......++.+...+.+... .--..+.......+....++.-.+
T Consensus 219 ~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkp 291 (577)
T KOG1258|consen 219 ERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKP 291 (577)
T ss_pred hhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-------HHHHHHHhhHhHHHHHHhhhhhccccccccCc
Confidence 00 111111111111111111112222221111100 000112222223333333333332
Q ss_pred ---CChhHHHHHHHHHHHcCChHHHHHHhhhCCCC---ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHH
Q 047120 279 ---RDVVSWANMIDGYAKLGRVDIARRLFDEMPKR---DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLV 352 (634)
Q Consensus 279 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 352 (634)
++..+|...+..-.+.|+.+.+.-+|++..-| -...|-..+.-....|+.+-|-.++....+- . .|+.....
T Consensus 292 l~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i-~-~k~~~~i~ 369 (577)
T KOG1258|consen 292 LDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKI-H-VKKTPIIH 369 (577)
T ss_pred ccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh-c-CCCCcHHH
Confidence 35577888888888889999998888887754 2345655555555668888887777666533 2 22222222
Q ss_pred HHH-HHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH---HHHHhccC--CChhHHHHHHHH---
Q 047120 353 IVL-SAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAI---KVFEQIED--GSVDHWNAMING--- 423 (634)
Q Consensus 353 ~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~---~~~~~~~~--~~~~~~~~li~~--- 423 (634)
.+- .-+-..|+++.|..+++.+...- +.-..+-..-+....+.|+.+.+. .++....+ .+....+.+.--
T Consensus 370 L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 370 LLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFAR 448 (577)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHH
Confidence 222 22345678888888888887754 222333334456667777777777 44433331 222222222222
Q ss_pred --HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 047120 424 --LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461 (634)
Q Consensus 424 --~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 461 (634)
+.-.++.+.|..++.++.+. ..++...|..++..+..
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELI 487 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHh
Confidence 22346677777777777764 34444555555554443
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=96.25 E-value=0.069 Score=52.56 Aligned_cols=143 Identities=9% Similarity=0.056 Sum_probs=83.2
Q ss_pred ChHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHhc---------cCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc
Q 047120 429 LGELAFDLLMEMER-LSIEPD-DITFTGLLNACAH---------AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497 (634)
Q Consensus 429 ~~~~A~~~~~~m~~-~g~~p~-~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 497 (634)
..+.|+.+|.+... ..+.|+ ...|..+..++.. .....+|.+.-+.+.+. -+.|......+..++..
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHh
Confidence 35677778888772 224666 3466666555432 22344555555555542 12345555566666666
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCch--HHHHHHHHhcCCCchHHHHH
Q 047120 498 AGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS--YVLLSNMFAGLGMWNDARRV 573 (634)
Q Consensus 498 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~ 573 (634)
.|+++.|...|++. .+.|| ..+|......+.-.|+.++|.+.++++++++|....+ .-..+++|+..+ .++|+++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 77777777777776 55566 3455555556666777777777777777777754432 223334555443 4555555
Q ss_pred H
Q 047120 574 R 574 (634)
Q Consensus 574 ~ 574 (634)
+
T Consensus 430 ~ 430 (458)
T PRK11906 430 Y 430 (458)
T ss_pred H
Confidence 4
No 233
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.18 E-value=1.1 Score=49.25 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHH
Q 047120 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495 (634)
Q Consensus 416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 495 (634)
.|.+...-+.....+++|.-.|+..-+ ..-.+.+|...|+|.+|..+..++.. +-.--..+-..|+.-+
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHH
Confidence 344444444445555555544443321 11234455555566655555554432 1000011123455555
Q ss_pred hccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047120 496 GRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543 (634)
Q Consensus 496 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 543 (634)
...+++-+|-++..+....|.. .+..+++...+++|.++....
T Consensus 1010 ~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhc
Confidence 5666666666665554322221 122234444555555555443
No 234
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.17 E-value=0.017 Score=48.80 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
.+...++..+...|++++|.+.+++++..+|-+...|..++.+|...|+..+|.++++++.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35556777788899999999999999999999999999999999999999999999988843
No 235
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.16 E-value=0.089 Score=42.97 Aligned_cols=89 Identities=13% Similarity=0.109 Sum_probs=57.9
Q ss_pred HHHHhccCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc---hHHHHHHHHhc
Q 047120 492 VDILGRAGHIEAARNLIEDM----PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS---SYVLLSNMFAG 563 (634)
Q Consensus 492 ~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 563 (634)
.....+.|++++|.+.|+.+ +..|- ...-..|+.++.+.|++++|...+++-++++|.+|. +++..+.++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34455677788888877777 22222 335566777888888888888888888888887766 34444444444
Q ss_pred CCC---------------chHHHHHHHHHHhC
Q 047120 564 LGM---------------WNDARRVRSMMKER 580 (634)
Q Consensus 564 ~g~---------------~~~A~~~~~~~~~~ 580 (634)
+.. ..+|...|+++.+.
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 433 45666666666443
No 236
>PRK11906 transcriptional regulator; Provisional
Probab=95.97 E-value=0.4 Score=47.42 Aligned_cols=139 Identities=15% Similarity=0.140 Sum_probs=85.1
Q ss_pred HHHHHHHHHhcc---CCC---hhHHHHHHHHHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 047120 399 IENAIKVFEQIE---DGS---VDHWNAMINGLAIH---------GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAG 463 (634)
Q Consensus 399 ~~~A~~~~~~~~---~~~---~~~~~~li~~~~~~---------~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 463 (634)
.+.|+.+|.+.. +.| ...|..+..++... .+..+|.++.++..+.+ .-|......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 456777787776 334 33555555444332 12445666666666653 335667777777777777
Q ss_pred CHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCChhHHHH
Q 047120 464 LVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDV---IWRTLLSACRNYENLNVGEP 538 (634)
Q Consensus 464 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~---~~~~l~~~~~~~g~~~~a~~ 538 (634)
+++.|...|+.+... .|+ ...|......+.-.|+.++|.+.+++. ...|... .....+..|+. ..++.|++
T Consensus 353 ~~~~a~~~f~rA~~L---~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAKIH---STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIK 428 (458)
T ss_pred chhhHHHHHHHHhhc---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHH
Confidence 788888888887653 454 445666666677788888888888874 6566533 22223334544 35566666
Q ss_pred HHHH
Q 047120 539 VAKH 542 (634)
Q Consensus 539 ~~~~ 542 (634)
+|-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 6654
No 237
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.93 E-value=1.3 Score=40.45 Aligned_cols=85 Identities=18% Similarity=0.199 Sum_probs=40.8
Q ss_pred HhccCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHH
Q 047120 495 LGRAGHIEAARNLIEDM-PMEPN--DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDAR 571 (634)
Q Consensus 495 ~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 571 (634)
+...++.+.|...+.+. ...++ ...+..+...+...++++.+...+..+....|.....+..++..+...|.++++.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEAL 256 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHH
Confidence 34445555555555444 22222 3444444445555555555555555555555543444444444444444455555
Q ss_pred HHHHHHHh
Q 047120 572 RVRSMMKE 579 (634)
Q Consensus 572 ~~~~~~~~ 579 (634)
..+.+...
T Consensus 257 ~~~~~~~~ 264 (291)
T COG0457 257 EALEKALE 264 (291)
T ss_pred HHHHHHHH
Confidence 55544433
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.023 Score=54.36 Aligned_cols=66 Identities=11% Similarity=0.064 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 517 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
..++..|...|.+.+++..|++...++++.+|+|+-..+.-+.+|...|+++.|+..|+++.+...
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 346777888899999999999999999999999999999999999999999999999999987654
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.80 E-value=0.7 Score=45.90 Aligned_cols=98 Identities=10% Similarity=0.119 Sum_probs=46.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCC-C-CCC--HHHHHHHHHHHHh
Q 047120 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMP-M-EPN--DVIWRTLLSACRN 529 (634)
Q Consensus 454 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~--~~~~~~l~~~~~~ 529 (634)
.+..++-+.|+.++|++.++++.+.........+...|+.++...+.+.++..++.+-. + -|. ...|+..+-....
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 34444445555555555555555422211123344455555555666666555555541 1 122 2234433322222
Q ss_pred cCC---------------hhHHHHHHHHHhccCCCCC
Q 047120 530 YEN---------------LNVGEPVAKHLIGMDSSNS 551 (634)
Q Consensus 530 ~g~---------------~~~a~~~~~~~~~~~p~~~ 551 (634)
.|+ -..|.+.+.++++.+|-.|
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 222 1235677788887776444
No 240
>PRK09687 putative lyase; Provisional
Probab=95.70 E-value=2 Score=40.72 Aligned_cols=79 Identities=11% Similarity=0.130 Sum_probs=33.8
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCc----hHHHHHHHHHHhcCCCCCCHhHHHHH
Q 047120 279 RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYS----MKALEIFDNMQCELYLHPDDASLVIV 354 (634)
Q Consensus 279 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~m~~~~~~~p~~~~~~~l 354 (634)
+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. .++...+..+... .|+...-...
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~d~~VR~~A 111 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DKSACVRASA 111 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CCCHHHHHHH
Confidence 44444444444444444433222222222334444444445555555542 3455555554322 3444444444
Q ss_pred HHHHHc
Q 047120 355 LSAIAQ 360 (634)
Q Consensus 355 l~~~~~ 360 (634)
+.++..
T Consensus 112 ~~aLG~ 117 (280)
T PRK09687 112 INATGH 117 (280)
T ss_pred HHHHhc
Confidence 444433
No 241
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.66 E-value=1.7 Score=39.72 Aligned_cols=198 Identities=14% Similarity=0.094 Sum_probs=132.9
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC--CCh-hHHHHHHH-
Q 047120 348 DASLVIVLSAIAQLGHIDKGVAIHRYLEKD-QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED--GSV-DHWNAMIN- 422 (634)
Q Consensus 348 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~li~- 422 (634)
...+......+...+++..+...+...... ........+......+...+++..+...+..... ++. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 345555555566666666666666555542 2334445555566666666777777777776653 221 22333333
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCccc-ChhHHHHHHHHHhc
Q 047120 423 GLAIHGLGELAFDLLMEMERLSIEP----DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP-ELQHYGCMVDILGR 497 (634)
Q Consensus 423 ~~~~~~~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 497 (634)
.+...|+++.|...+.+... ..| ....+......+...++.+.+...+...... ... ....+..+...+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHH
Confidence 68888999999999998855 333 2334444555577788999999999988763 222 35667888888999
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120 498 AGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549 (634)
Q Consensus 498 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (634)
.++++.|...+... ...|+ ...+..+...+...|..+.+...+++.++..|.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999887 44554 445555555555777899999999999998887
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.62 E-value=0.072 Score=48.45 Aligned_cols=92 Identities=14% Similarity=0.152 Sum_probs=53.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---CchHHHHHH
Q 047120 488 YGCMVDILGRAGHIEAARNLIEDM-PMEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN---SSSYVLLSN 559 (634)
Q Consensus 488 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 559 (634)
|+.-++ +.+.|++..|...|... ..-|+ ...+.-|...+...|++++|...|..+.+..|.+ |+.+.-|+.
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 443333 34455566666666554 11111 2233446666667777777777777776665443 445666666
Q ss_pred HHhcCCCchHHHHHHHHHHhC
Q 047120 560 MFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~ 580 (634)
+..+.|+.++|..+|+++.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 777777777777777766544
No 243
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.57 E-value=0.19 Score=40.63 Aligned_cols=49 Identities=8% Similarity=0.185 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHH
Q 047120 445 IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493 (634)
Q Consensus 445 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 493 (634)
..|+..++..++.+|+..+++..|.++.+...+.++++.+..+|..|++
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4566666666666666666666666666666666666555555655554
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.53 E-value=0.11 Score=47.42 Aligned_cols=93 Identities=14% Similarity=0.100 Sum_probs=53.7
Q ss_pred ccCCHHHHHHHHHHhHHhcCcc-cChhHHHHHHHHHhccCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChh
Q 047120 461 HAGLVKEGLLCFELMRRIHKLE-PELQHYGCMVDILGRAGHIEAARNLIEDM----PMEPN-DVIWRTLLSACRNYENLN 534 (634)
Q Consensus 461 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~ 534 (634)
+.|++..|...|....+.+.-. -....+-.|..++...|++++|..+|..+ +-.|- +..+.-|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 4455666666666655522110 01223445666666677777666666655 21222 345555666667777777
Q ss_pred HHHHHHHHHhccCCCCCch
Q 047120 535 VGEPVAKHLIGMDSSNSSS 553 (634)
Q Consensus 535 ~a~~~~~~~~~~~p~~~~~ 553 (634)
+|...|+++++..|..+.+
T Consensus 233 ~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 233 EACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHHHHHCCCCHHH
Confidence 7777777777777766544
No 245
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.51 E-value=5.2 Score=44.40 Aligned_cols=26 Identities=19% Similarity=0.070 Sum_probs=15.0
Q ss_pred HHHHHHHHHcCC--CcchHHHHHHHHHH
Q 047120 87 WNAIIKTYSHGL--DPKEALVMFCLMLD 112 (634)
Q Consensus 87 ~~~li~~~~~~g--~~~~A~~~~~~m~~ 112 (634)
.-.+|.+|++.+ ..+.|+....+...
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 345667777665 44555555555543
No 246
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.42 E-value=0.42 Score=40.21 Aligned_cols=70 Identities=29% Similarity=0.330 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCcccChhH
Q 047120 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEP-DDITFTGLLNACAHAGLVKEGLLCFELMRR----IHKLEPELQH 487 (634)
Q Consensus 416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 487 (634)
+...++..+...|++++|..+++.+... .| +...|..++.++...|+..+|.++|+.+.+ ..|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4455666677778888888888877764 44 455777788888888888888877776643 3466666554
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.76 Score=42.44 Aligned_cols=122 Identities=12% Similarity=0.089 Sum_probs=81.6
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChh
Q 047120 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRT---LLSACRNYENLN 534 (634)
Q Consensus 458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~ 534 (634)
.....|++.+|...|+.+.... +-+...-..++.+|...|+.+.|..++..++.+-....+.. -+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4556788888888888776631 22345566778888888888888888888854433333333 233344444444
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 535 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
+... ++.-...+|++...-..++..|...|+.++|.+.+-.+.+++.
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 4333 3344567888888888899999999999988888877765543
No 248
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.40 E-value=1.7 Score=42.41 Aligned_cols=67 Identities=18% Similarity=0.120 Sum_probs=29.9
Q ss_pred HHHHcCChHHHHHHhhhCCCC-------ChhhHHHHHHHHHH---cCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHH
Q 047120 290 GYAKLGRVDIARRLFDEMPKR-------DVVACNAMMGGYVR---NGYSMKALEIFDNMQCELYLHPDDASLVIVLSA 357 (634)
Q Consensus 290 ~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~ 357 (634)
.|....+++...++++.+... ...+-.....++.+ .|+.++|++++..+... .-.++..+|..+...
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLLGRI 226 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHHHHH
Confidence 344445555555555554432 11112223334444 55666666666553322 233444455444443
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.39 E-value=0.42 Score=39.15 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=64.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHH
Q 047120 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEP--DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494 (634)
Q Consensus 417 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 494 (634)
+..-.....+.|++++|.+.|+.+...-... ....-..++.++.+.+++++|...++...+.+.-.|++. |.....+
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~g 91 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRG 91 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHH
Confidence 3344445556677777777777776652111 134556666777777777777777777766544444422 3333333
Q ss_pred HhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 047120 495 LGRAGHIEAARNLIEDM-PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552 (634)
Q Consensus 495 ~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 552 (634)
+..-...+. .+..+ +.+ ...+....|...|+.+++..|+++-
T Consensus 92 L~~~~~~~~---~~~~~~~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 92 LSYYEQDEG---SLQSFFRSD-------------RDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHhhh---HHhhhcccc-------------cCcHHHHHHHHHHHHHHHHCcCChh
Confidence 332221111 11111 111 1123356788888999988888654
No 250
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=4.5 Score=43.05 Aligned_cols=51 Identities=12% Similarity=0.226 Sum_probs=37.8
Q ss_pred HHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 047120 388 ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLM 438 (634)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 438 (634)
-++..+.+..+++.+..+.+...+.++..|..++..+++.+..+...+...
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~ 760 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVY 760 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHH
Confidence 466677777888888888888887788888888888888875544444333
No 251
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.34 E-value=2.1 Score=38.85 Aligned_cols=57 Identities=9% Similarity=0.132 Sum_probs=41.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCCc---hHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSS---SYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 523 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
+..-|.+.|.+..|..-++++++..|..+. .+..+..+|...|..++|...-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 344577888888888888888888766555 445556678888888888877665543
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=1.6 Score=40.35 Aligned_cols=155 Identities=12% Similarity=0.049 Sum_probs=102.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC
Q 047120 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500 (634)
Q Consensus 421 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 500 (634)
.......|++.+|..+|....... .-+...-..+..++...|+.+.|..++..+..... .........-+..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhc
Confidence 345567788888888888887752 22345667778888899999999999888754210 1111112234555566555
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccC--CCCCchHHHHHHHHhcCCCchH-HHHHHHH
Q 047120 501 IEAARNLIEDMPMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMD--SSNSSSYVLLSNMFAGLGMWND-ARRVRSM 576 (634)
Q Consensus 501 ~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~ 576 (634)
..+...+-++....| |...-..+...+...|+.+.|.+.+-.+++.+ -.+...-..+..++.-.|.-+. +.++-++
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 555555555553356 55666778888899999999998888887765 4567788888888887775554 3333333
Q ss_pred H
Q 047120 577 M 577 (634)
Q Consensus 577 ~ 577 (634)
|
T Consensus 299 L 299 (304)
T COG3118 299 L 299 (304)
T ss_pred H
Confidence 3
No 253
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.08 E-value=0.92 Score=37.79 Aligned_cols=83 Identities=18% Similarity=0.236 Sum_probs=40.2
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHh
Q 047120 51 KLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS 130 (634)
Q Consensus 51 ~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 130 (634)
.+|..+...+.+ ......++.+...+. .+...+|.++..|++. +..+.++.++. ..+......+++.|.
T Consensus 12 ~vv~~~~~~~~~---~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~-~~~~ll~~l~~------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 12 EVVELFEKRNLL---EELIPYLESALKLNS-ENPALQTKLIELYAKY-DPQKEIERLDN------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHhCCcH---HHHHHHHHHHHccCc-cchhHHHHHHHHHHHH-CHHHHHHHHHh------ccccCCHHHHHHHHH
Confidence 444455444444 555555555544432 3455566666666544 22333333331 123344444555555
Q ss_pred ccCChHHHHHHHHH
Q 047120 131 RLGLIEEGLQIHGL 144 (634)
Q Consensus 131 ~~~~~~~a~~~~~~ 144 (634)
+.+-++++..++..
T Consensus 81 ~~~l~~~~~~l~~k 94 (140)
T smart00299 81 KAKLYEEAVELYKK 94 (140)
T ss_pred HcCcHHHHHHHHHh
Confidence 55555555555544
No 254
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.98 E-value=1.1 Score=46.01 Aligned_cols=161 Identities=14% Similarity=0.075 Sum_probs=100.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHh----ccCCHHHHHHHHHHhHHhcCcccChh
Q 047120 417 WNAMINGLAIHGLGELAFDLLMEMERLS-IEPDD-----ITFTGLLNACA----HAGLVKEGLLCFELMRRIHKLEPELQ 486 (634)
Q Consensus 417 ~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~ 486 (634)
...++....-.|+-+.+++.+.+..+.+ +.-.. ..|...+..++ .....+.|.++++.+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3344455555566666766666654422 11111 12333333332 245778888888888764 45544
Q ss_pred HHH-HHHHHHhccCCHHHHHHHHHhCC-C-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHH-H
Q 047120 487 HYG-CMVDILGRAGHIEAARNLIEDMP-M-----EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL-S 558 (634)
Q Consensus 487 ~~~-~l~~~~~~~g~~~~A~~~~~~~~-~-----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l-~ 558 (634)
.|. .-.+.+...|+.++|++.|+++- . +.....+--+...+....++++|...+.++.+.+.-+...|..+ +
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 443 34566778888999999888651 1 12234556667777888899999999999888765544444443 4
Q ss_pred HHHhcCCCc-------hHHHHHHHHHHhC
Q 047120 559 NMFAGLGMW-------NDARRVRSMMKER 580 (634)
Q Consensus 559 ~~~~~~g~~-------~~A~~~~~~~~~~ 580 (634)
-++...|+. ++|.+++++....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 456678888 8888888887554
No 255
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.84 E-value=1.6 Score=44.81 Aligned_cols=158 Identities=13% Similarity=0.018 Sum_probs=92.8
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHh-----HHHHHHHHHH----ccCChHHHHHHHHHHHHcCCCCchhHHH
Q 047120 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA-----SLVIVLSAIA----QLGHIDKGVAIHRYLEKDQFSLNGKHGV 387 (634)
Q Consensus 317 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-----~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 387 (634)
.++....=.|+-+.+++.+.+..+..++.-... .|...+..+. ...+.+.+.+++..+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 344444445666666666666554433333222 2223333222 244667777777777764 24433333
Q ss_pred -HHHHHhHhcCCHHHHHHHHHhccCC-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 047120 388 -ALIDMYSKCGSIENAIKVFEQIEDG-------SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA- 458 (634)
Q Consensus 388 -~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~- 458 (634)
.-...+...|++++|++.|++.... ....+--+.-.+....++++|.+.|.++.+.. ..+..+|..+..+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 3356677778888888888865421 22345556667778889999999999988753 2344455555443
Q ss_pred HhccCCH-------HHHHHHHHHhHH
Q 047120 459 CAHAGLV-------KEGLLCFELMRR 477 (634)
Q Consensus 459 ~~~~g~~-------~~a~~~~~~~~~ 477 (634)
+...|+. ++|..++.++..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3455666 777777776654
No 256
>PRK15331 chaperone protein SicA; Provisional
Probab=94.84 E-value=0.74 Score=38.73 Aligned_cols=86 Identities=9% Similarity=-0.042 Sum_probs=41.8
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHH
Q 047120 423 GLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIE 502 (634)
Q Consensus 423 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 502 (634)
-+...|++++|..+|+-+...+. -+..-+..|..++-..+++++|+..|..+... . ..|+..+-....+|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHH
Confidence 34455566666666555554321 12233344444445556666666665555431 1 122222333455566666666
Q ss_pred HHHHHHHhC
Q 047120 503 AARNLIEDM 511 (634)
Q Consensus 503 ~A~~~~~~~ 511 (634)
.|...|+..
T Consensus 123 ~A~~~f~~a 131 (165)
T PRK15331 123 KARQCFELV 131 (165)
T ss_pred HHHHHHHHH
Confidence 666655554
No 257
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.76 E-value=0.067 Score=31.47 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047120 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550 (634)
Q Consensus 519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (634)
.|..+...+...|++++|++.++++++++|.+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566666777777777777777777777653
No 258
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.73 E-value=0.049 Score=32.13 Aligned_cols=32 Identities=9% Similarity=0.061 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549 (634)
Q Consensus 518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (634)
.+|..++..+...|++++|+..++++++++|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777777777777777777777764
No 259
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.61 E-value=0.35 Score=39.17 Aligned_cols=47 Identities=28% Similarity=0.411 Sum_probs=24.9
Q ss_pred CcccChhHHHHHHHHHhccCCHHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 047120 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDM----PMEPNDVIWRTLLSA 526 (634)
Q Consensus 480 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~ 526 (634)
...|+..+..+++.+|+..|++..|+++++.. +++-+...|..|+.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34455555555555555555555555555443 344445555555543
No 260
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.58 E-value=2.7 Score=36.91 Aligned_cols=163 Identities=13% Similarity=0.111 Sum_probs=88.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHH
Q 047120 413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491 (634)
Q Consensus 413 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 491 (634)
-+..||-+.--+...|+++.|.+.|+...+. .|. ..+...-.-++.-.|++.-|.+=+-..-.. .|+...-...
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~---D~~DPfR~LW 172 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD---DPNDPFRSLW 172 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhc---CCCChHHHHH
Confidence 3457787777788888888888888888764 343 223222222344567777777655444331 2332221112
Q ss_pred HHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------CchHHHHHHHHhcC
Q 047120 492 VDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN-------SSSYVLLSNMFAGL 564 (634)
Q Consensus 492 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 564 (634)
+..-.+.-++.+|..-+.+--...|..-|...+-.+.- |.+.+ +.+++++.....++ ..+|..|+.-+...
T Consensus 173 LYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 173 LYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 22223445666776544332112344444433333221 22111 22333333332222 34788888999999
Q ss_pred CCchHHHHHHHHHHhCCC
Q 047120 565 GMWNDARRVRSMMKERNL 582 (634)
Q Consensus 565 g~~~~A~~~~~~~~~~~~ 582 (634)
|+.++|..+|+-....++
T Consensus 251 G~~~~A~~LfKLaiannV 268 (297)
T COG4785 251 GDLDEATALFKLAVANNV 268 (297)
T ss_pred ccHHHHHHHHHHHHHHhH
Confidence 999999999988866554
No 261
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.57 E-value=1.1 Score=41.99 Aligned_cols=114 Identities=8% Similarity=0.005 Sum_probs=59.1
Q ss_pred hcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHhccCCHHH
Q 047120 395 KCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTG----LLNACAHAGLVKE 467 (634)
Q Consensus 395 ~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~----ll~~~~~~g~~~~ 467 (634)
..|+..+|-..++++.+ .|..+++-.=.++.-.|+.+.-...++++... ..||...|.. +.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34555555555555542 35555555556666666666666666665543 2344322222 2223345666666
Q ss_pred HHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC
Q 047120 468 GLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM 511 (634)
Q Consensus 468 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 511 (634)
|.+.-++....+ +.|...-.++...+...|++.++.++..+-
T Consensus 194 AEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 194 AEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 666655554421 223333445555566666666666666554
No 262
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=0.35 Score=45.11 Aligned_cols=160 Identities=11% Similarity=-0.068 Sum_probs=117.6
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHH----HHHHhccCC
Q 047120 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM----VDILGRAGH 500 (634)
Q Consensus 425 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~ 500 (634)
...|+..+|...++++.+. .+.|...+...=.+|.-.|+.+.-...++++.. ...+|...|..+ .-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 4578899999999999885 444666888888899999999999988888875 345666555444 344568999
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CCchHHHHHHHHhcCCCchHHHHHH
Q 047120 501 IEAARNLIEDM-PME-PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS----NSSSYVLLSNMFAGLGMWNDARRVR 574 (634)
Q Consensus 501 ~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~ 574 (634)
+++|++.-++. .+. .|...-.++...+...|++.++.++.++--..=.. -...|-+.+..+...+.++.|.++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999987 444 45667777888888899999999888775322111 1235666777788889999999999
Q ss_pred HHHHhCCCccCCc
Q 047120 575 SMMKERNLKKLPG 587 (634)
Q Consensus 575 ~~~~~~~~~~~~~ 587 (634)
++-.-....++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 8765444444433
No 263
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.41 E-value=3.7 Score=39.10 Aligned_cols=162 Identities=10% Similarity=-0.040 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCH---hHHHHHHHHHHccCChHHHHHHHHHHHHcCC-----CCchhH
Q 047120 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD---ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF-----SLNGKH 385 (634)
Q Consensus 314 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~ 385 (634)
.|..+.+++-+..++.+++.+-+.-....|..|.. ....++..+....+.++++.+.|+.+.+... .....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 45555666666666666666666555444444421 2223344555566667777777665544211 112356
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhcc-------CCChh------HHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC
Q 047120 386 GVALIDMYSKCGSIENAIKVFEQIE-------DGSVD------HWNAMINGLAIHGLGELAFDLLMEMER----LSIEPD 448 (634)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~------~~~~li~~~~~~~~~~~A~~~~~~m~~----~g~~p~ 448 (634)
+..|...|.+..++++|.-+..+.. -.|.. +...|.-++...|+...|.+.-++..+ .|-.|.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 6667777777777776655544332 11221 222334455555666555555555432 222221
Q ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 047120 449 -DITFTGLLNACAHAGLVKEGLLCFELM 475 (634)
Q Consensus 449 -~~~~~~ll~~~~~~g~~~~a~~~~~~~ 475 (634)
......+...|-..|+.+.|..-|+.+
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 113334444555566666665555543
No 264
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.34 E-value=2.6 Score=35.02 Aligned_cols=44 Identities=7% Similarity=0.056 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 047120 87 WNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131 (634)
Q Consensus 87 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 131 (634)
-..+|..+...+.+.....+++.+...+ ..+...++.++..+++
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 4455555555555555555555555544 2344445555555554
No 265
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.30 E-value=0.15 Score=43.70 Aligned_cols=104 Identities=13% Similarity=0.032 Sum_probs=56.1
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCcccC---hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 047120 456 LNACAHAGLVKEGLLCFELMRRIHKLEPE---LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNY 530 (634)
Q Consensus 456 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 530 (634)
.+-+.+.|++++|..-|..+.....-.+. ...|..-.-++.+.+.++.|++-..+. .+.|. .....--..+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 44456677777777777766653111111 123444445566666676666655554 33443 22222233456666
Q ss_pred CChhHHHHHHHHHhccCCCCCchHHHHHH
Q 047120 531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559 (634)
Q Consensus 531 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 559 (634)
..+++|+.-|+++.+.+|....+--..+.
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 67777777777777777665444433333
No 266
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.29 E-value=2.1 Score=43.37 Aligned_cols=130 Identities=16% Similarity=0.116 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHH
Q 047120 253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKAL 332 (634)
Q Consensus 253 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 332 (634)
.+.++.-+.+.|..+.|+++... . ..-.+...++|+++.|.++.+++. +...|..|.....+.|+.+-|.
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe 367 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAE 367 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHH
Confidence 44555556666667766665542 1 234455667788888877776665 4557888888888888888888
Q ss_pred HHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHh
Q 047120 333 EIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ 408 (634)
Q Consensus 333 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (634)
+.|.+.. -+..++-.+.-.|+.+...++.+.....|- ++....++...|++++..+++.+
T Consensus 368 ~c~~k~~----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 368 ECYQKAK----------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhhc----------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 8887765 245566666777777777777766666552 23334444555666666655543
No 267
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.12 E-value=9.2 Score=40.50 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCChh
Q 047120 253 WNSMLHGCVKCGKMDDAQALFDKMPKRDVV 282 (634)
Q Consensus 253 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 282 (634)
-..|+..|...+++..|++++-...++++.
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhccChHHH
Confidence 344788899999999999999888776544
No 268
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.92 E-value=0.15 Score=40.36 Aligned_cols=56 Identities=13% Similarity=-0.012 Sum_probs=52.3
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
-+....|+++.|++.|.+++.+-|..++.|+.-+.++.-+|+.++|.+-+++..+.
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 34678999999999999999999999999999999999999999999999998765
No 269
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.88 E-value=0.22 Score=45.24 Aligned_cols=33 Identities=9% Similarity=0.183 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 047120 137 EGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY 169 (634)
Q Consensus 137 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 169 (634)
=+..++++|...|+.||..+-..|++++.+.+-
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 345555666666666666666666666555543
No 270
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.83 E-value=5.8 Score=40.29 Aligned_cols=101 Identities=16% Similarity=0.255 Sum_probs=63.6
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHH
Q 047120 258 HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDN 337 (634)
Q Consensus 258 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 337 (634)
....+.|+++.|.++.++.. +...|..|.+...+.|+++-|++.|.+..+ |..|+-.|.-.|+.+.-.++.+.
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHH
Confidence 34455777777777766653 566788888888888888888888877764 55666777777877666666665
Q ss_pred HHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHH
Q 047120 338 MQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHR 372 (634)
Q Consensus 338 m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 372 (634)
....+ -++....++.-.|+.++..+++.
T Consensus 399 a~~~~-------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 399 AEERG-------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHTT--------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHcc-------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 55442 24444555555667666665543
No 271
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.63 E-value=12 Score=40.19 Aligned_cols=114 Identities=10% Similarity=-0.033 Sum_probs=54.7
Q ss_pred CChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHH
Q 047120 428 GLGELAFDLLMEMERLS-IEPDDI--TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504 (634)
Q Consensus 428 ~~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 504 (634)
.+.+.|..++....... +.+... ....+.......+..+++...++..... ..+......-+..-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHH
Confidence 44566777776654332 222211 2333333333332244555555543321 12333344444444567777777
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047120 505 RNLIEDMP--MEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544 (634)
Q Consensus 505 ~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 544 (634)
...+..|+ ..-...-..-+..++...|+.++|...|+++.
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66666662 11122222334445555677777777777663
No 272
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.57 E-value=0.72 Score=42.04 Aligned_cols=100 Identities=22% Similarity=0.267 Sum_probs=76.4
Q ss_pred HHHHHHhcc--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----------
Q 047120 402 AIKVFEQIE--DGSVDHWNAMINGLAIH-----GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAG----------- 463 (634)
Q Consensus 402 A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----------- 463 (634)
.+..|..+. +.|-.+|-..+..+... +..+=....++.|.+-|+.-|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345555555 55777777777777543 345556667888999999999999999998876532
Q ss_pred -----CHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHH
Q 047120 464 -----LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIE 502 (634)
Q Consensus 464 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 502 (634)
+-+-++.+++.|.. +|+.||.++-..|++++++.|-.-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccH
Confidence 33557889999988 899999999999999999988643
No 273
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.32 E-value=0.13 Score=30.79 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=19.8
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120 553 SYVLLSNMFAGLGMWNDARRVRSMMK 578 (634)
Q Consensus 553 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 578 (634)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888888888888888888753
No 274
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.27 E-value=2.9 Score=35.07 Aligned_cols=88 Identities=15% Similarity=0.125 Sum_probs=47.0
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHH
Q 047120 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRTLLSACRNYENLNVG 536 (634)
Q Consensus 458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a 536 (634)
.-.+.++.+++..++..+.-...-.|...++. ...+.+.|+|.+|..+|+++ ...|....-..|+..|....+-..=
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 33456677777777777765322222233333 33466778888888888877 3344444445555555443332333
Q ss_pred HHHHHHHhccC
Q 047120 537 EPVAKHLIGMD 547 (634)
Q Consensus 537 ~~~~~~~~~~~ 547 (634)
..+-+++++.+
T Consensus 97 r~~A~evle~~ 107 (160)
T PF09613_consen 97 RRYADEVLESG 107 (160)
T ss_pred HHHHHHHHhcC
Confidence 33334444444
No 275
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.16 E-value=2 Score=42.87 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCC--CCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCcc
Q 047120 521 RTLLSACRNYENLNVGEPVAKHLIGMDSS--NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKK 584 (634)
Q Consensus 521 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 584 (634)
..|...+.+.|+.++|++.++.+++..|. +-.....|+..|...+.+.++..++.+.-+...++
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk 328 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPK 328 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence 44555666777777777777777766654 34466777777777777777777777764443433
No 276
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.14 E-value=9.7 Score=37.62 Aligned_cols=149 Identities=13% Similarity=0.037 Sum_probs=82.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC--hhH
Q 047120 413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP---DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE--LQH 487 (634)
Q Consensus 413 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~ 487 (634)
...+|..++..+.+.|.++.|...+.++...+..+ ++.....-++.....|+-.+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44567788888888888888888888887643221 2334444455566678888888887776651 11111 111
Q ss_pred HHHHHHHHhccCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 047120 488 YGCMVDILGRAGHIEAARNL-IEDMPMEPNDVIWRTLLSACRNY------ENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560 (634)
Q Consensus 488 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 560 (634)
...+...+.. ..+..... ........-...+..+...+... +..+++...|+++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111100 00000000 00000000112333333334444 888999999999999999988888888887
Q ss_pred HhcC
Q 047120 561 FAGL 564 (634)
Q Consensus 561 ~~~~ 564 (634)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 7543
No 277
>PRK09687 putative lyase; Provisional
Probab=93.06 E-value=8.2 Score=36.56 Aligned_cols=217 Identities=7% Similarity=-0.023 Sum_probs=89.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCh----HHHHHHHhhCccCCCChhHHHHHHHH
Q 047120 152 SDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI----ESARELFDSMPIRERNLISWNSVLNG 227 (634)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~p~~~~~~~ll~~ 227 (634)
+|..+....+..+...|..+....+.+-...+|...-...+.++.+.|+. .++...+..+....|+...-...+.+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~a 114 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINA 114 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 34444444444444444332222222222233444444444445544442 34555555543334554444444444
Q ss_pred HHhcCCc----HHHHHHHHhh-CCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcC-ChHHHH
Q 047120 228 YAQLKSG----LQFAWQIFEK-MPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG-RVDIAR 301 (634)
Q Consensus 228 ~~~~~~~----~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~ 301 (634)
++..+.. ...+...+.. +..++..+-...+.++.+.++.+....+..-+..+|..+-...+.++.+.+ +...+.
T Consensus 115 LG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~ 194 (280)
T PRK09687 115 TGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIR 194 (280)
T ss_pred HhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHH
Confidence 4443220 1112222211 222344444445555555554332222233333344444444444444432 122233
Q ss_pred HH-hhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHH
Q 047120 302 RL-FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376 (634)
Q Consensus 302 ~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 376 (634)
.. ...+.+++..+....+.++.+.|+ ..|+..+-...+. ++ ....++.++...|+. ++...+..+.+
T Consensus 195 ~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 195 EAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 22 223334555555555555555555 3444444444422 11 123444555555553 34444444443
No 278
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.87 E-value=2.2 Score=37.11 Aligned_cols=94 Identities=11% Similarity=0.024 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccCh------hH
Q 047120 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI--TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL------QH 487 (634)
Q Consensus 416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~ 487 (634)
.+..+..-|.+.|+.+.|++.|.++.+....|... .+..+++.....+++..+.....++........|. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45666677777777777777777777665555432 55666777777777777777776665521111111 12
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhC
Q 047120 488 YGCMVDILGRAGHIEAARNLIEDM 511 (634)
Q Consensus 488 ~~~l~~~~~~~g~~~~A~~~~~~~ 511 (634)
|..| .+...+++.+|.+.|-+.
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHcc
Confidence 2222 233567888887777665
No 279
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.83 E-value=9.2 Score=41.26 Aligned_cols=187 Identities=16% Similarity=0.114 Sum_probs=101.1
Q ss_pred HhcCCHHHHHHHHHhcc----CCCh-------hHHHHHHH-HHHHcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 047120 394 SKCGSIENAIKVFEQIE----DGSV-------DHWNAMIN-GLAIHGLGELAFDLLMEMERL----SIEPDDITFTGLLN 457 (634)
Q Consensus 394 ~~~~~~~~A~~~~~~~~----~~~~-------~~~~~li~-~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~ 457 (634)
.-..++++|..++.++. .++. ..|+.+-. .....|++++|+++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 44566777777666543 2211 13444432 234467788888888776654 11223445666677
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCcccChhHHHHH-----HHHHhccCCHHHH--HHHHHhC-----CCCC----CHHHHH
Q 047120 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM-----VDILGRAGHIEAA--RNLIEDM-----PMEP----NDVIWR 521 (634)
Q Consensus 458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g~~~~A--~~~~~~~-----~~~p----~~~~~~ 521 (634)
+..-.|++++|..+.....+. .-..+...+..+ ...+..+|+...| +..+... +.+| -..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777788999998887776652 112233333222 2234566633322 2222222 1122 223444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccC----CCCCc---hHHHHHHHHhcCCCchHHHHHHHHHHhCCCcc
Q 047120 522 TLLSACRNYENLNVGEPVAKHLIGMD----SSNSS---SYVLLSNMFAGLGMWNDARRVRSMMKERNLKK 584 (634)
Q Consensus 522 ~l~~~~~~~g~~~~a~~~~~~~~~~~----p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 584 (634)
.+..++.+ ++.+..-..+.++.. |..-. .+..|+.++...|+.++|...+.++.......
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 44444433 444444444444443 22222 23467888889999999999998887655443
No 280
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.66 E-value=4.9 Score=34.26 Aligned_cols=102 Identities=17% Similarity=0.080 Sum_probs=54.1
Q ss_pred HHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 047120 104 LVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR 183 (634)
Q Consensus 104 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 183 (634)
++.++.+.+.|++|+...+..+++.+.+.|.+.. +.+++..++-+|.......+-.+.. ....+.++--+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 3445555566777777777777777777776543 3334445544444433333322221 222222222222222
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHhhC
Q 047120 184 DSVSYNSMIDGYVKSGNIESARELFDSM 211 (634)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 211 (634)
=...+..++..+...|++-+|+++.+..
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 2224555666777777777777777664
No 281
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.55 E-value=0.19 Score=31.81 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=28.4
Q ss_pred CchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 551 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
|..+..++..|.+.|++++|+++++++.+...
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 46789999999999999999999999977644
No 282
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.38 E-value=10 Score=35.99 Aligned_cols=18 Identities=6% Similarity=-0.104 Sum_probs=13.4
Q ss_pred HHhcCChhHHHHHHHHHh
Q 047120 527 CRNYENLNVGEPVAKHLI 544 (634)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~ 544 (634)
+.+.++++.|.++|+-++
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 566788888888887554
No 283
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.29 E-value=0.065 Score=45.01 Aligned_cols=84 Identities=19% Similarity=0.167 Sum_probs=43.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHH
Q 047120 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESA 204 (634)
Q Consensus 125 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 204 (634)
++..+.+.+.......+++.+...+...+....+.++..|++.++.++..++++.... .....+++.+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3444445555555555566555544444555666666666666655666665553221 2233444555555555555
Q ss_pred HHHHhhC
Q 047120 205 RELFDSM 211 (634)
Q Consensus 205 ~~~~~~m 211 (634)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555544
No 284
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.17 E-value=7.3 Score=33.83 Aligned_cols=111 Identities=6% Similarity=-0.032 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHH-----HHHHHHHhccCCHHH
Q 047120 432 LAFDLLMEMERLSIEPDDI---TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY-----GCMVDILGRAGHIEA 503 (634)
Q Consensus 432 ~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~ 503 (634)
+.....+++....-. +.. +-..+...+...+++++|...++.... .|....+ -.|.......|.+++
T Consensus 70 ~~~~~~ekf~~~n~~-t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~ 144 (207)
T COG2976 70 KSIAAAEKFVQANGK-TIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADA 144 (207)
T ss_pred hhHHHHHHHHhhccc-cHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 445555556543211 111 223345567788899999888887765 2222333 235566788899999
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047120 504 ARNLIEDMPMEPN--DVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548 (634)
Q Consensus 504 A~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 548 (634)
|++.++... .++ ......-...+...|+-++|...|+++++.++
T Consensus 145 AL~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 145 ALKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 999998863 232 33344455678889999999999999988873
No 285
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.16 E-value=11 Score=37.22 Aligned_cols=66 Identities=9% Similarity=0.130 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC----CCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 515 PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS----SNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 515 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
....+|..++..+.+.|.++.|...+.++...++ ..|......+..+...|+..+|+..++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456888899999999999999999999988662 25677888899999999999999999888773
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.12 E-value=0.2 Score=29.97 Aligned_cols=28 Identities=7% Similarity=0.038 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047120 519 IWRTLLSACRNYENLNVGEPVAKHLIGM 546 (634)
Q Consensus 519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 546 (634)
+|..|...|.+.|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667778888888888888888885543
No 287
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.07 E-value=5.4 Score=32.08 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCc
Q 047120 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKL 481 (634)
Q Consensus 418 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 481 (634)
...+..+...|+-+.-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.++-+ .|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe-kG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE-KGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH-hch
Confidence 34456667777777777777777653 366777777777777778877777777777766 343
No 288
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.06 E-value=0.21 Score=29.27 Aligned_cols=30 Identities=3% Similarity=0.043 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047120 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDS 548 (634)
Q Consensus 519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 548 (634)
+|..+...+...|++++|...++++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566667777777777777777776666
No 289
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.97 E-value=8.8 Score=34.35 Aligned_cols=61 Identities=10% Similarity=0.108 Sum_probs=33.8
Q ss_pred HHHHhccCCHHHHHHHHHhC---CCCCCHHHHH---HHHHH-HH--hcCChhHHHHHHHHHhccCCCCCc
Q 047120 492 VDILGRAGHIEAARNLIEDM---PMEPNDVIWR---TLLSA-CR--NYENLNVGEPVAKHLIGMDSSNSS 552 (634)
Q Consensus 492 ~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~---~l~~~-~~--~~g~~~~a~~~~~~~~~~~p~~~~ 552 (634)
...-+..+++.+|+++|++. .+..+..-|. .++.+ +| ...|.-.+.+.+++-.+++|.-.+
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 33445677788888887776 2222222221 12221 22 235666777777887778876444
No 290
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.95 E-value=19 Score=38.25 Aligned_cols=96 Identities=18% Similarity=0.141 Sum_probs=50.7
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC-----ChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcH
Q 047120 161 ISLYVRCGYLEFARQLFDKMGIR-----DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL 235 (634)
Q Consensus 161 i~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~ 235 (634)
++.+.+.+.+++|+.+.+..... -...+...|..+.-.|++++|-...-.|.. -+...|..-+..+...+. .
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g--n~~~eWe~~V~~f~e~~~-l 439 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG--NNAAEWELWVFKFAELDQ-L 439 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc--chHHHHHHHHHHhccccc-c
Confidence 45556666777777766655431 223566667777777777777666666654 333444444444444333 2
Q ss_pred HHHHHHHhhCCC----CCchHHHHHHHHHHh
Q 047120 236 QFAWQIFEKMPE----RDLISWNSMLHGCVK 262 (634)
Q Consensus 236 ~~a~~~~~~~~~----~~~~~~~~l~~~~~~ 262 (634)
. .++.-++. .+...|..++..+..
T Consensus 440 ~---~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 440 T---DIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred c---hhhccCCCCCcccCchHHHHHHHHHHH
Confidence 2 22222222 244556666666655
No 291
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.93 E-value=0.22 Score=46.40 Aligned_cols=109 Identities=11% Similarity=0.074 Sum_probs=77.1
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC
Q 047120 455 LLNACAHAGLVKEGLLCFELMRRIHKLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM-PME-PNDVIWRTLLSACRNYE 531 (634)
Q Consensus 455 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g 531 (634)
-.+-|.+.|.+++|+..|...... .| +..++..-..+|.+..++..|..-...+ .+. .-...|.--+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~---~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV---YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc---CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 366788999999999999887652 44 7778888888999999998887766654 211 12335555555666688
Q ss_pred ChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHH
Q 047120 532 NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDA 570 (634)
Q Consensus 532 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 570 (634)
...+|.+-++.++++.|.+.. |-..+.+.....++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE----LKKSLARINSLRER 214 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhh
Confidence 999999999999999998544 33444444444343
No 292
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.18 E-value=0.92 Score=42.18 Aligned_cols=61 Identities=18% Similarity=0.158 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
++..++..+...|+++.+...+++++..+|-+...|..++.+|.+.|+...|+..++++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4445555566666666666666666666666666666666666666666666666666644
No 293
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.96 E-value=26 Score=37.77 Aligned_cols=127 Identities=9% Similarity=-0.026 Sum_probs=62.2
Q ss_pred cccHHHHHHHHH-cCCCcchHHHHHHHHHHCCCCCCcc-----hHHHHHHHHhccCChHHHHHHHHHHHHhcCC----CC
Q 047120 84 PFLWNAIIKTYS-HGLDPKEALVMFCLMLDNGVSVDKF-----SASLVLKACSRLGLIEEGLQIHGLLRKVAFG----SD 153 (634)
Q Consensus 84 ~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~ 153 (634)
..++-.+...+. ...+.+.|...+++.+...-+++-. .-..+++.+.+.+... |...++..++.--. +-
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 345555566555 4567888888888765432222221 1123344455544444 77777766543211 12
Q ss_pred hhHHHHH-HHHHHhcCCHHHHHHHHhhCCC-----CC--hhHHHHHHHHHH--hCCChHHHHHHHhhC
Q 047120 154 LFLQNCL-ISLYVRCGYLEFARQLFDKMGI-----RD--SVSYNSMIDGYV--KSGNIESARELFDSM 211 (634)
Q Consensus 154 ~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~~li~~~~--~~g~~~~A~~~~~~m 211 (634)
...+..+ +..+...++...|.+.++.+.. .| ...+-.++.+.. +.+.++++++.++++
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 2223333 2333333677777777766532 12 223333333332 345455566555544
No 294
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.84 E-value=24 Score=37.31 Aligned_cols=437 Identities=13% Similarity=0.121 Sum_probs=198.6
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC---C
Q 047120 172 FARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE---R 248 (634)
Q Consensus 172 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~ 248 (634)
...+.+..+++||. -.+.+++.-..+.+.+.++++++.+.......|......+-... .+.-..+.+.+.. .
T Consensus 200 ~lv~~y~~~~~PDy---~~vc~c~v~Ldd~~~va~ll~kL~~e~~~llayQIAFDL~esas--QefL~~v~~~l~~d~~~ 274 (929)
T KOG2062|consen 200 LLVKTYLKLPSPDY---FSVCQCYVFLDDAEAVADLLEKLVKEDDLLLAYQIAFDLYESAS--QEFLDSVLDRLPADDAR 274 (929)
T ss_pred HHHHHHccCCCCCe---eeeeeeeEEcCCHHHHHHHHHHHHhcchhhhHHHHHHHHhhccC--HHHHHHHHHHccccccc
Confidence 34444445555554 45667778888899999999888875444445555554443322 2222333344432 1
Q ss_pred CchHHHHHH-------------HHHHhcCChHHHHHHHhhCCC--CChhH--HHHHHHHHHHcCChHHHH--HHhhhCCC
Q 047120 249 DLISWNSML-------------HGCVKCGKMDDAQALFDKMPK--RDVVS--WANMIDGYAKLGRVDIAR--RLFDEMPK 309 (634)
Q Consensus 249 ~~~~~~~l~-------------~~~~~~g~~~~A~~~~~~~~~--~~~~~--~~~l~~~~~~~g~~~~A~--~~~~~~~~ 309 (634)
|......++ .-+.++++.+ ..+++...+ ++..+ -..+.+++...|-..+-. .-++.+.+
T Consensus 275 de~p~~kii~ILSGe~tik~~l~FL~~~N~tD--~~iL~~iK~s~r~sv~H~A~~iAN~fMh~GTT~D~FlR~NL~Wlsk 352 (929)
T KOG2062|consen 275 DEKPMEKIISILSGEETIKLYLQFLLRHNNTD--LLILEEIKESVRNSVCHTATLIANAFMHAGTTSDTFLRNNLDWLSK 352 (929)
T ss_pred ccChHHHHHHHhcCchHHHHHHHHHHHcCCch--HHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCcchHHHHhchhHHhh
Confidence 222222222 2223333322 112222211 22222 233456666666433211 11111211
Q ss_pred -CChhhHHHHH-HHHHHcCCchHHHHHHHHHHhcCCCCCCHhHH----HHHHHHHHccCChHHHHHHHHHHHHcCCCCch
Q 047120 310 -RDVVACNAMM-GGYVRNGYSMKALEIFDNMQCELYLHPDDASL----VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNG 383 (634)
Q Consensus 310 -~~~~~~~~l~-~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 383 (634)
.+..-+++.. -+....|+..+|.++++-..... - +....| ....-++.+.|..+...+++.+.++..-.+..
T Consensus 353 AtNWaKFtAtAsLGvIH~G~~~~~~~ll~pYLP~~-~-~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~v 430 (929)
T KOG2062|consen 353 ATNWAKFTATASLGVIHRGHENQAMKLLAPYLPKE-A-GEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAENEVV 430 (929)
T ss_pred cchHhhhhhhhhcceeeccccchHHHHhhhhCCcc-C-CCCCCccccchhhhhhccccCcCccHHHHHHHHHHhccchhh
Confidence 1222222222 24456788888888887765431 1 111111 11222344555555577777666554433333
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhcc---CC-ChhHHH--HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHH--H
Q 047120 384 KHGVALIDMYSKCGSIENAIKVFEQIE---DG-SVDHWN--AMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFT--G 454 (634)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~-~~~~~~--~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~--~ 454 (634)
..-.+|.-++...|.- -.++|+.+. .. +.++=. .+..++...|... .+.+++|..--.... ..+.. .
T Consensus 431 ~hG~cLGlGLa~mGSa--~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~--~eaiedm~~Ya~ETQHeki~RGl~ 506 (929)
T KOG2062|consen 431 RHGACLGLGLAGMGSA--NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN--QEAIEDMLTYAQETQHEKIIRGLA 506 (929)
T ss_pred hhhhhhhccchhcccc--cHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc--HHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3333444444433321 123333322 22 222111 1222333333321 122333332100000 11111 1
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCcccChhH--HHHHHHHHhccCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhc
Q 047120 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQH--YGCMVDILGRAGHIEAARNLIEDMPMEPN--DVIWRTLLSACRNY 530 (634)
Q Consensus 455 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~ 530 (634)
+.-++..-|+-++|..+.+++..+. .|-... .-++.-+|+-.|+.....+++.-.-..+| +.-+..+.-++.-.
T Consensus 507 vGiaL~~ygrqe~Ad~lI~el~~dk--dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~ 584 (929)
T KOG2062|consen 507 VGIALVVYGRQEDADPLIKELLRDK--DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLF 584 (929)
T ss_pred HhHHHHHhhhhhhhHHHHHHHhcCC--chhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEe
Confidence 2224455566677888888877621 222111 23456677778877666666665422333 33444444446666
Q ss_pred CChhHHHHHHHHHhccCCCC--CchHHHHHHHHhcCCCchHHHHHHHHHHhCCCccCCceeEEEEcCEEEEEEeCCCCCc
Q 047120 531 ENLNVGEPVAKHLIGMDSSN--SSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRL 608 (634)
Q Consensus 531 g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (634)
.+.+....+.+-+.+...+. -.+-..|+-+|+..|.. +|+.+++.|......-...-..+.+. ..-....++..|
T Consensus 585 ~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-eAi~lLepl~~D~~~fVRQgAlIa~a--mIm~Q~t~~~~p 661 (929)
T KOG2062|consen 585 RDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-EAINLLEPLTSDPVDFVRQGALIALA--MIMIQQTEQLCP 661 (929)
T ss_pred cChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-HHHHHHhhhhcChHHHHHHHHHHHHH--HHHHhcccccCc
Confidence 77777777777766554222 22444555666666654 78888888876543211100000000 001122345566
Q ss_pred chhHHHHHHHhcccCccc
Q 047120 609 QVRDIYYMLDNMWTPDSV 626 (634)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~ 626 (634)
....+.+.+...+...|.
T Consensus 662 kv~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 662 KVNGFRKQLEKVINDKHE 679 (929)
T ss_pred hHHHHHHHHHHHhhhhhh
Confidence 677777777766555544
No 295
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.79 E-value=13 Score=34.00 Aligned_cols=241 Identities=14% Similarity=0.137 Sum_probs=137.7
Q ss_pred CChHHHHHHhhhCCC----C---ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcC--CC--CCCHhHHHHHHHHHHccCC
Q 047120 295 GRVDIARRLFDEMPK----R---DVVACNAMMGGYVRNGYSMKALEIFDNMQCEL--YL--HPDDASLVIVLSAIAQLGH 363 (634)
Q Consensus 295 g~~~~A~~~~~~~~~----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~--~p~~~~~~~ll~~~~~~~~ 363 (634)
...++|+.-|.+..+ + ...+...++....+.|++++.++.|+++..-- .+ .-+..+.+.++...+.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 356666666665542 1 22344567778888888888888888775310 11 2234566777777776677
Q ss_pred hHHHHHHHHHHHH----c-CCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCC------------C---hhHHHHHHHH
Q 047120 364 IDKGVAIHRYLEK----D-QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG------------S---VDHWNAMING 423 (634)
Q Consensus 364 ~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------~---~~~~~~li~~ 423 (634)
.+....+++.-.+ . +-..--.+-..|...|...+++....+++..+... + ...|..-|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 6666666554322 1 11122233345777888888888888888776421 1 2357777888
Q ss_pred HHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHH-----HhccCCHHHHHHHHHHhHHhcCc--ccChhH---HHHHH
Q 047120 424 LAIHGLGELAFDLLMEMERLS-IEPDDITFTGLLNA-----CAHAGLVKEGLLCFELMRRIHKL--EPELQH---YGCMV 492 (634)
Q Consensus 424 ~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~---~~~l~ 492 (634)
|...++-.+...++++...-. .-|-+.... +++- ..+.|++++|..-|-++.+.+.- .|...+ |..|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 888888777777777765422 234443333 3333 34678888887544444432221 222222 56666
Q ss_pred HHHhccCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 047120 493 DILGRAGH----IEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541 (634)
Q Consensus 493 ~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 541 (634)
+++.+.|- -.+|. -.+-.|.......++.+|.. +++.+-++++.
T Consensus 280 NMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~ 327 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQN-NDIIEFERILK 327 (440)
T ss_pred HHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 66666652 11111 00234566677888888765 45555554443
No 296
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.67 E-value=16 Score=34.76 Aligned_cols=59 Identities=17% Similarity=-0.061 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCh---HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047120 417 WNAMINGLAIHGLG---ELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRR 477 (634)
Q Consensus 417 ~~~li~~~~~~~~~---~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 477 (634)
...++.+|...+.. ++|..+++.+... -|+ +..+..-++.+.+.++.+++.+.+..|..
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 44455555554442 3444455555433 233 33444445555556666777777777665
No 297
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.60 E-value=0.33 Score=28.39 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=25.1
Q ss_pred chHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 552 SSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
..+..++.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999998664
No 298
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.48 E-value=8 Score=36.88 Aligned_cols=145 Identities=12% Similarity=0.109 Sum_probs=79.6
Q ss_pred hhhHHHHHHhccC-chH----HHHHHHHHHHhCCCCchhhhhHHHHHhhc--CC-CCCCHHHHHHHHHhccccCC---CC
Q 047120 14 TQSTLLLLRKCKT-LND----VNQIHARMITTGFIKNTHLTTKLVASFSS--SP-CTPLTEFARYIFFKYHAFRE---KK 82 (634)
Q Consensus 14 ~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~-~~~~~~~A~~~~~~~~~~~~---~~ 82 (634)
...++.+|...+. ++. +..+++.|.+.|+.-+..++-+-.-.... .. ....+..|..+++.|++.-+ .+
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~ 139 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP 139 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc
Confidence 4455555555555 433 35888888888888877655432222221 11 11234668888888875431 22
Q ss_pred CcccHHHHHHHHHcCCCc----chHHHHHHHHHHCCCCCCcc--hHHHHHHHHhccCC--hHHHHHHHHHHHHhcCCCCh
Q 047120 83 DPFLWNAIIKTYSHGLDP----KEALVMFCLMLDNGVSVDKF--SASLVLKACSRLGL--IEEGLQIHGLLRKVAFGSDL 154 (634)
Q Consensus 83 ~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~ 154 (634)
+-..+..++.. ...+. +.+...|+.+.+.|+..+.. ..+.++..+..... ...+.++++.+.+.|+++..
T Consensus 140 ~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~ 217 (297)
T PF13170_consen 140 EDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKY 217 (297)
T ss_pred cchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccc
Confidence 22344444433 33333 35556677777777766655 23333333322222 34677788888888877666
Q ss_pred hHHHHH
Q 047120 155 FLQNCL 160 (634)
Q Consensus 155 ~~~~~l 160 (634)
..|..+
T Consensus 218 ~~yp~l 223 (297)
T PF13170_consen 218 MHYPTL 223 (297)
T ss_pred ccccHH
Confidence 665544
No 299
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.39 E-value=51 Score=40.26 Aligned_cols=65 Identities=11% Similarity=0.003 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCc
Q 047120 517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583 (634)
Q Consensus 517 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (634)
..+|.......+..|.++.|...+-++.+.. -|..+...+..++..|+...|+.++++-.+...+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 4588888888999999999998888777666 5678999999999999999999999998866543
No 300
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.77 E-value=6 Score=33.53 Aligned_cols=26 Identities=12% Similarity=-0.111 Sum_probs=14.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHC
Q 047120 418 NAMINGLAIHGLGELAFDLLMEMERL 443 (634)
Q Consensus 418 ~~li~~~~~~~~~~~A~~~~~~m~~~ 443 (634)
..|.-+-.+.|++.+|...|..+...
T Consensus 171 EALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 171 EALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHhHHHHhccchHHHHHHHHHHHcc
Confidence 34444445556666666666665543
No 301
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.76 E-value=0.43 Score=27.95 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=25.7
Q ss_pred chHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120 552 SSYVLLSNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
..|..++.+|...|++++|+..+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999987653
No 302
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.68 E-value=0.04 Score=46.29 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=24.4
Q ss_pred HHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHH
Q 047120 90 IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIH 142 (634)
Q Consensus 90 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 142 (634)
+|..+.+.+.+.....+++.+...+...+....+.++..|++.+..+....++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 34444445555555555555554433333444455555555554444444443
No 303
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.26 E-value=13 Score=31.66 Aligned_cols=121 Identities=12% Similarity=0.111 Sum_probs=80.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChh-HHHH--HHHHHhccC
Q 047120 424 LAIHGLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ-HYGC--MVDILGRAG 499 (634)
Q Consensus 424 ~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~--l~~~~~~~g 499 (634)
+++.+..++|+.-|..+.+.|...=+. ............|+...|...|+++-+... .|... -... -...+...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhccc
Confidence 356678888999998888876543322 333444556788899999999998876422 23221 1111 123456788
Q ss_pred CHHHHHHHHHhCCCC--CC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047120 500 HIEAARNLIEDMPME--PN-DVIWRTLLSACRNYENLNVGEPVAKHLIG 545 (634)
Q Consensus 500 ~~~~A~~~~~~~~~~--p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 545 (634)
.+++.....+.+..+ |- ...-..|.-+-.+.|++..|...|+.+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 898888888877322 22 23445677777889999999999988765
No 304
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.24 E-value=9 Score=34.54 Aligned_cols=177 Identities=10% Similarity=0.043 Sum_probs=90.2
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047120 384 KHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460 (634)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 460 (634)
..|.....+|....++++|...+.+.. +.+...| ...+.++.|.-+.++|.+. .--...|......|.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 445555556666667776666555543 1111111 1122345555555555542 111235556666777
Q ss_pred ccCCHHHHHHHHHHhHH-hcCcccChh--HHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 047120 461 HAGLVKEGLLCFELMRR-IHKLEPELQ--HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGE 537 (634)
Q Consensus 461 ~~g~~~~a~~~~~~~~~-~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 537 (634)
..|..+.|-..++++-+ ..++.|+.. .|..-.......++...|.+ .+..+...+.+...+++|-
T Consensus 103 E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e------------l~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE------------LYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH------------HHHHhhhHhhhhHHhhHHH
Confidence 77777777666665543 112333321 12222222222222222222 3344445566777777776
Q ss_pred HHHHHHhccC------CCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120 538 PVAKHLIGMD------SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 538 ~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
..+.+-.... |..-..|...+.+|....++..|...++.--+.+
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 6665543221 2222346667777778889989888887554443
No 305
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.71 E-value=4.3 Score=37.87 Aligned_cols=74 Identities=14% Similarity=0.220 Sum_probs=49.5
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 047120 385 HGVALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMER-----LSIEPDDITFTGLL 456 (634)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~~~ll 456 (634)
++..++..+...|+.+.+...++++.. -+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 445566677777777777777776653 2555777777777777777777777777654 46666666555444
Q ss_pred HH
Q 047120 457 NA 458 (634)
Q Consensus 457 ~~ 458 (634)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.63 E-value=2.8 Score=35.22 Aligned_cols=73 Identities=14% Similarity=0.028 Sum_probs=53.6
Q ss_pred HhccCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCc
Q 047120 495 LGRAGHIEAARNLIEDM-PMEPNDVIWRTL-LSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMW 567 (634)
Q Consensus 495 ~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 567 (634)
-.+.++.+++..+++.+ .+.|.......+ ...+...|++.+|+++++.+.+..|..|..--.++.++...|+.
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 35778999999999988 456665544333 23377899999999999998888887776666666666655553
No 307
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.50 E-value=2.5 Score=34.78 Aligned_cols=71 Identities=13% Similarity=0.104 Sum_probs=38.0
Q ss_pred ccCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCc
Q 047120 497 RAGHIEAARNLIEDM-PMEPNDVIWRTL-LSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMW 567 (634)
Q Consensus 497 ~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 567 (634)
..++++++..+++.+ .+.|+..-...+ ...+...|++.+|.++++.+.+..+..|..--.++.++.-.|+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 466666666666666 233433222111 12255666666666666666655555554445555555555553
No 308
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.45 E-value=0.52 Score=25.68 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=17.3
Q ss_pred chHHHHHHHHhcCCCchHHHHHHH
Q 047120 552 SSYVLLSNMFAGLGMWNDARRVRS 575 (634)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~A~~~~~ 575 (634)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667777778888887777765
No 309
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.35 E-value=0.63 Score=26.88 Aligned_cols=27 Identities=11% Similarity=0.034 Sum_probs=15.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120 523 LLSACRNYENLNVGEPVAKHLIGMDSS 549 (634)
Q Consensus 523 l~~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (634)
+..++.+.|+.++|.+.++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444455556666666666666655554
No 310
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.88 E-value=4.2 Score=30.93 Aligned_cols=62 Identities=13% Similarity=0.100 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHH
Q 047120 430 GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493 (634)
Q Consensus 430 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 493 (634)
.-+..+-++.+....+.|++......+++|-+.+++..|.++++.++.+.+. ....|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHH
Confidence 3356666777777788999999999999999999999999999999876543 3337776664
No 311
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.84 E-value=20 Score=32.21 Aligned_cols=91 Identities=14% Similarity=0.050 Sum_probs=48.5
Q ss_pred HHHHHhcc-CCHHHHHHHHHhC-----CCCCCHHHHHHHHHH---HHhcCChhHHHHHHHHHhccCCCCCchH------H
Q 047120 491 MVDILGRA-GHIEAARNLIEDM-----PMEPNDVIWRTLLSA---CRNYENLNVGEPVAKHLIGMDSSNSSSY------V 555 (634)
Q Consensus 491 l~~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~p~~~~~~------~ 555 (634)
+...|... .++++|+..++.. +-+.+...-.+++.+ -...+++.+|+.+|+++....-+++-.- .
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 44444433 5566666666655 112222233333333 3567899999999999987665444321 1
Q ss_pred HH-HHHHhcCCCchHHHHHHHHHHhCC
Q 047120 556 LL-SNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 556 ~l-~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
.- +..+.-.++.=.+...+++..+..
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 11 222222355555666666665543
No 312
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.81 E-value=11 Score=35.92 Aligned_cols=123 Identities=10% Similarity=0.115 Sum_probs=64.2
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHhHh--cC----CHHHHHHHHHhccCC-------ChhHHHHHHHHHHHcCC----h
Q 047120 368 VAIHRYLEKDQFSLNGKHGVALIDMYSK--CG----SIENAIKVFEQIEDG-------SVDHWNAMINGLAIHGL----G 430 (634)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~----~ 430 (634)
..+++.+.+.|+.-+..++-+..-.... .. ....|..+|+.|.+. +-.++..++.. ..++ .
T Consensus 82 ~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~ 159 (297)
T PF13170_consen 82 LDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELA 159 (297)
T ss_pred HHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHH
Confidence 3455555566655555444332222221 11 234456666666532 22233333322 2222 3
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCC--HHHHHHHHHHhHHhcCcccChhHHHHHHH
Q 047120 431 ELAFDLLMEMERLSIEPDDI--TFTGLLNACAHAGL--VKEGLLCFELMRRIHKLEPELQHYGCMVD 493 (634)
Q Consensus 431 ~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 493 (634)
+.+..+|+.+.+.|+..+.. ....++..+..... ...+.++++.+.+ .++++....|..++-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHH
Confidence 56677788888878776543 44444443333322 3467778888887 688877777665543
No 313
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.81 E-value=6.5 Score=34.21 Aligned_cols=94 Identities=12% Similarity=0.118 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC--hhHHHHHHHHHhccCCHHHHHHHHHhCC---CCCCHHHHH---
Q 047120 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE--LQHYGCMVDILGRAGHIEAARNLIEDMP---MEPNDVIWR--- 521 (634)
Q Consensus 450 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~--- 521 (634)
..+..+...|.+.|+.+.|.+.|.++.. +...+. ...+-.++....-.|++..+...+.++. ..+......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~-~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARD-YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3677788888889999999998888877 443443 4556778888888888888888877661 111212111
Q ss_pred HHHHH--HHhcCChhHHHHHHHHHh
Q 047120 522 TLLSA--CRNYENLNVGEPVAKHLI 544 (634)
Q Consensus 522 ~l~~~--~~~~g~~~~a~~~~~~~~ 544 (634)
....+ +...+++..|-+.|-...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 11222 345677777776665544
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.30 E-value=15 Score=30.53 Aligned_cols=49 Identities=12% Similarity=0.198 Sum_probs=28.7
Q ss_pred ccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC
Q 047120 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM 511 (634)
Q Consensus 461 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 511 (634)
..++.+++..+++.+.-...-.+...++.. ..+.+.|+|++|..+|++.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILREL 70 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhh
Confidence 366667777777666553222233444433 3356777777777777776
No 315
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=87.13 E-value=60 Score=36.94 Aligned_cols=183 Identities=13% Similarity=0.016 Sum_probs=87.8
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHH
Q 047120 279 RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAI 358 (634)
Q Consensus 279 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~ 358 (634)
+|..+-...+..+...+..+ ...+...+..+|...-...+.++.+.+..+. +.... -.++...-.....++
T Consensus 696 ~d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l----~D~~~~VR~~aa~aL 766 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA----TDENREVRIAVAKGL 766 (897)
T ss_pred CCHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh----cCCCHHHHHHHHHHH
Confidence 44444444444444332111 1233444455555555555555555443321 11122 134444444455555
Q ss_pred HccCChHH-HHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHH-HHHhccCCChhHHHHHHHHHHHcCChHHHHHH
Q 047120 359 AQLGHIDK-GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIK-VFEQIEDGSVDHWNAMINGLAIHGLGELAFDL 436 (634)
Q Consensus 359 ~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 436 (634)
...+..+. +...+..+.+ .++..+-...+.++...|..+.+.. +...+..++...-...+.++...+. +++...
T Consensus 767 ~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~ 842 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPA 842 (897)
T ss_pred HHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHH
Confidence 55444332 2233333332 3456666666666766666544422 3333445555555556666666654 345555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047120 437 LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477 (634)
Q Consensus 437 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 477 (634)
+..+.+ .|+...-...+.++.+...-..+...+..+.+
T Consensus 843 L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 843 LVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 555553 45655555666666664333455556655554
No 316
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.93 E-value=5.5 Score=29.97 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHH
Q 047120 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493 (634)
Q Consensus 429 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 493 (634)
+.-++.+-++.+....+.|++......+++|-+.+++.-|.++++.++.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44566677777777788999999999999999999999999999988864432 4446666553
No 317
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.92 E-value=1.1 Score=26.05 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=25.7
Q ss_pred chHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 552 SSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
..|..++.+|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999988653
No 318
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.89 E-value=49 Score=35.67 Aligned_cols=186 Identities=12% Similarity=0.097 Sum_probs=102.9
Q ss_pred CCcccHHHHHHHHHcCCCcchHHHHHHHHHH-CCCCCCcc--hHHHHHHHHh-ccCChHHHHHHHHHHHHhcCCCChh--
Q 047120 82 KDPFLWNAIIKTYSHGLDPKEALVMFCLMLD-NGVSVDKF--SASLVLKACS-RLGLIEEGLQIHGLLRKVAFGSDLF-- 155 (634)
Q Consensus 82 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~--~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~-- 155 (634)
.+...|..+|.. |+..++-+.+ ..++|... ++-.+...+. ...+++.|+..+++.....-.++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 355667777653 4555666653 33334332 4455555555 6789999999999876543222221
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHhhCCC----CC----hhHHHHH-HHHHHhCCChHHHHHHHhhCccC-----CCCh
Q 047120 156 ---LQNCLISLYVRCGYLEFARQLFDKMGI----RD----SVSYNSM-IDGYVKSGNIESARELFDSMPIR-----ERNL 218 (634)
Q Consensus 156 ---~~~~li~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~-----~p~~ 218 (634)
....++..+.+.+... |...+++..+ .. ...+..+ +..+...+++..|++.++.+... .|..
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 2235567777766655 7777766432 11 1123333 23333347999999998877654 3444
Q ss_pred hHHHHHHHHHHhcCCc-HHHHHHHHhhC----CC---------CCchHHHHHHHHH--HhcCChHHHHHHHhhCC
Q 047120 219 ISWNSVLNGYAQLKSG-LQFAWQIFEKM----PE---------RDLISWNSMLHGC--VKCGKMDDAQALFDKMP 277 (634)
Q Consensus 219 ~~~~~ll~~~~~~~~~-~~~a~~~~~~~----~~---------~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~ 277 (634)
..+..++.+....... .+.+.+.++++ .. |-..+|..+++.+ ...|++..+...++++.
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555433221 34444444333 11 2345666666654 46777777777766654
No 319
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.59 E-value=6.1 Score=34.35 Aligned_cols=86 Identities=13% Similarity=0.009 Sum_probs=43.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHH
Q 047120 422 NGLAIHGLGELAFDLLMEMERLSIEPD-----DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDIL 495 (634)
Q Consensus 422 ~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 495 (634)
.-+...|++++|..-|.+.+.. +++. ...|..-..++.+.+.++.|+.-..+.... .|+ ......-..+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel---~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL---NPTYEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---CchhHHHHHHHHHHH
Confidence 3455666666666666666653 1221 123444444555666666666555555441 221 11111223455
Q ss_pred hccCCHHHHHHHHHhC
Q 047120 496 GRAGHIEAARNLIEDM 511 (634)
Q Consensus 496 ~~~g~~~~A~~~~~~~ 511 (634)
.+...+++|++-|+++
T Consensus 179 ek~ek~eealeDyKki 194 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKI 194 (271)
T ss_pred HhhhhHHHHHHHHHHH
Confidence 5666666666666555
No 320
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.15 E-value=53 Score=35.35 Aligned_cols=71 Identities=17% Similarity=-0.025 Sum_probs=42.4
Q ss_pred CcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC-------hHHHHHHHHHHHHhcCCCChh
Q 047120 83 DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGL-------IEEGLQIHGLLRKVAFGSDLF 155 (634)
Q Consensus 83 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~ 155 (634)
+.-.| .+|-.+.|+|++++|.++..+... ........+...+..+....+ -+....-|++..+.....|++
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 34456 677778888999999888865544 345666778888888876432 234555555555544333444
No 321
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.10 E-value=27 Score=31.99 Aligned_cols=198 Identities=13% Similarity=0.059 Sum_probs=123.4
Q ss_pred CCChhhHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCCCC--HhHHHHHHHHHHccCChHHHHHHHHHHHH---cCC--C
Q 047120 309 KRDVVACNAMMGG-YVRNGYSMKALEIFDNMQCELYLHPD--DASLVIVLSAIAQLGHIDKGVAIHRYLEK---DQF--S 380 (634)
Q Consensus 309 ~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~--~ 380 (634)
+||+..-|..-.+ -.+...+++|+.-|++..+..|-+.+ -.....++....+.+++++....+.++.. ..+ .
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 3565544433221 12345789999999999855332222 12445567778899999999998888764 212 2
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHHhcc-----CCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC----
Q 047120 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIE-----DGSV----DHWNAMINGLAIHGLGELAFDLLMEMERLSIEP---- 447 (634)
Q Consensus 381 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p---- 447 (634)
.+....+++++....+.+.+--..+|+.-. ..+. .+-..|...|...+++.+..+++.++....-.-
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 345667788887777777776666665432 1122 244567788888888888888888887642221
Q ss_pred CH-------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHH----HHHhccCCHHHHHH
Q 047120 448 DD-------ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV----DILGRAGHIEAARN 506 (634)
Q Consensus 448 ~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~ 506 (634)
|. ..|..-+..|....+-..-..+++.......-.|.+.....+- .++.+.|++++|-.
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 11 2466666777777777777778877665334445555444332 23457788887653
No 322
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.82 E-value=2.1 Score=40.23 Aligned_cols=96 Identities=15% Similarity=0.063 Sum_probs=64.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhcc
Q 047120 420 MINGLAIHGLGELAFDLLMEMERLSIEP-DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498 (634)
Q Consensus 420 li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 498 (634)
-..-|.+.|.+++|+..|.+.... .| +.+++..-..+|.+...+..|..=...+.... ..-...|..-+.+-...
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHH
Confidence 356789999999999999988764 67 88999999999999999888877666655420 00122233333333344
Q ss_pred CCHHHHHHHHHhC-CCCCCHHH
Q 047120 499 GHIEAARNLIEDM-PMEPNDVI 519 (634)
Q Consensus 499 g~~~~A~~~~~~~-~~~p~~~~ 519 (634)
|...+|.+-++.. .++|+..-
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHH
Confidence 5566666655554 56777443
No 323
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.59 E-value=1.3 Score=27.31 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=21.3
Q ss_pred chHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 552 SSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
.++..|+.+|...|++++|.+++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35677888888888888888888877543
No 324
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.42 E-value=4.3 Score=35.52 Aligned_cols=75 Identities=16% Similarity=0.026 Sum_probs=51.8
Q ss_pred CcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhc---CCCChhHHHHHHHHHHhcCCHHHHH
Q 047120 99 DPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA---FGSDLFLQNCLISLYVRCGYLEFAR 174 (634)
Q Consensus 99 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A~ 174 (634)
.-+.|+..|-.+...+.--++ .....+..+....|.+++.+++..+++.. -.+|+.++.+|++.|-+.|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~-elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETA-ELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 345677888777776644333 34444444444678888888888777643 3678888888999888888888774
No 325
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=85.31 E-value=74 Score=36.24 Aligned_cols=255 Identities=13% Similarity=0.085 Sum_probs=136.7
Q ss_pred HHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhH
Q 047120 271 ALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS 350 (634)
Q Consensus 271 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~ 350 (634)
.+...+..++..+-...+..+.+.+..+-...+...+.+++...-...+.++.+.+........+..+.. .+|...
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~----~~d~~V 700 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLG----SPDPVV 700 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhc----CCCHHH
Confidence 4444445577777777777777766544334444445555555555555555444322222223333332 245555
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCCh
Q 047120 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLG 430 (634)
Q Consensus 351 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 430 (634)
-...+.++...+..+ ...+.. +.+ .+|..+-...+.++.+.+..+. +...+..++...-...+.++...+..
T Consensus 701 R~~A~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 701 RAAALDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccc
Confidence 555555555433211 111222 221 4455556666666666554332 33334456666666666777766654
Q ss_pred HH-HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHH
Q 047120 431 EL-AFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIE 509 (634)
Q Consensus 431 ~~-A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 509 (634)
+. +...+..+.. .+|...-...+.++...|..+.+...+..+.+ .++..+-...+.++.+.+.. ++...+-
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~~-~a~~~L~ 844 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAAD-VAVPALV 844 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhcccc-chHHHHH
Confidence 32 3455555543 45666677777777777765554444444444 34555555667777777653 4445544
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047120 510 DMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIG 545 (634)
Q Consensus 510 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 545 (634)
.+-..|+...-...+.++.+.+....+...+..+++
T Consensus 845 ~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 443367777766777777665444566666666665
No 326
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.20 E-value=2.5 Score=37.81 Aligned_cols=85 Identities=13% Similarity=0.103 Sum_probs=52.6
Q ss_pred HhccCCHHHHHHHHHHhHHhcCcccChhH-HHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCChhH
Q 047120 459 CAHAGLVKEGLLCFELMRRIHKLEPELQH-YGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIW-RTLLSACRNYENLNV 535 (634)
Q Consensus 459 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~g~~~~ 535 (634)
|.....++.|+..|.+... +.|...+ |..=+.++.+..+++.+..--.+. .+.||.+-- ..+..++.....+.+
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 6666677777776666654 3555533 455566667777777766555444 566665533 334444566677777
Q ss_pred HHHHHHHHhcc
Q 047120 536 GEPVAKHLIGM 546 (634)
Q Consensus 536 a~~~~~~~~~~ 546 (634)
|+..++++..+
T Consensus 97 aI~~Lqra~sl 107 (284)
T KOG4642|consen 97 AIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHH
Confidence 77777777544
No 327
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.09 E-value=56 Score=34.68 Aligned_cols=247 Identities=11% Similarity=-0.011 Sum_probs=128.6
Q ss_pred HcCCchHHHHHHHHHHh-------cCCCCCCHhHHHHHHHHHHccC-----ChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047120 324 RNGYSMKALEIFDNMQC-------ELYLHPDDASLVIVLSAIAQLG-----HIDKGVAIHRYLEKDQFSLNGKHGVALID 391 (634)
Q Consensus 324 ~~g~~~~A~~~~~~m~~-------~~~~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 391 (634)
...+.+.|+.+|+.+.. . + .......+..+|.+.. +.+.|..++....+.|. |+....-..+.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~-~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~ 335 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATK-G---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLY 335 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhh-c---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 34555666666665544 2 2 2223334444444322 45566777766666653 23322222222
Q ss_pred HhHh-cCCHHHHHHHHHhccC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 047120 392 MYSK-CGSIENAIKVFEQIED-GSVDHWNAMINGLAI----HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLV 465 (634)
Q Consensus 392 ~~~~-~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 465 (634)
.... ..+...|.++|..... ..+.++..+..+|.. ..+...|..++.+..+.| .|...--...+..+.. +.+
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~ 413 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRY 413 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccc
Confidence 2221 2345677777766653 233343333333332 235777888888887776 3333322233333443 666
Q ss_pred HHHHHHHHHhHHhcCcccChhHHHHHHHH---Hhc----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChh
Q 047120 466 KEGLLCFELMRRIHKLEPELQHYGCMVDI---LGR----AGHIEAARNLIEDMPMEPNDVIWRTLLSACRN----YENLN 534 (634)
Q Consensus 466 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 534 (634)
+.+.-.+..+.. .+.+-....-..+... ... ..+.+.+...+.+...+-+......+...|.. ..+++
T Consensus 414 ~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~ 492 (552)
T KOG1550|consen 414 DTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPE 492 (552)
T ss_pred cHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChH
Confidence 666555555544 2322111111111111 111 22556677777776545566666666665543 23688
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHhcC-C--CchHHHHHHHHHHhCC
Q 047120 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGL-G--MWNDARRVRSMMKERN 581 (634)
Q Consensus 535 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~~~ 581 (634)
.|...+.++-... +.....++.++... | .+..|.+++++..+.+
T Consensus 493 ~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 493 KAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 8888888887777 67777888887643 1 2577888887776543
No 328
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.86 E-value=0.88 Score=26.21 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=24.8
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 553 SYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 553 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
++..++.++.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678899999999999999999998764
No 329
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=84.35 E-value=29 Score=30.81 Aligned_cols=159 Identities=12% Similarity=0.061 Sum_probs=92.2
Q ss_pred CCc-hhHHHHHHHHhHhcCCHHHHHHHHHhccCCChh-HHHHHHH--HHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHH
Q 047120 380 SLN-GKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD-HWNAMIN--GLAIHGLGELAFDLLMEMERLSI-EPDDITFTG 454 (634)
Q Consensus 380 ~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~ 454 (634)
.|+ +.+|+-+.-.+...|+++.|.+.|+...+-|+. -|..+-. ++--.|++.-|.+-+...-+... .|=...|..
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY 174 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY 174 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHH
Confidence 444 577888888888899999999999988765554 2222222 22235788888877777665421 111223433
Q ss_pred HHHHHhccCCHHHHHHHH-HHhHHhcCcccChhHHHHHH-HHHhccCCHHHHHHHHHhCCCCCC-------HHHHHHHHH
Q 047120 455 LLNACAHAGLVKEGLLCF-ELMRRIHKLEPELQHYGCMV-DILGRAGHIEAARNLIEDMPMEPN-------DVIWRTLLS 525 (634)
Q Consensus 455 ll~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~p~-------~~~~~~l~~ 525 (634)
+.. ..-+..+|..-+ ++..+ .|..-|...+ ..|.-.=..+.+.+-...-. ..+ ..||..|.+
T Consensus 175 l~E---~k~dP~~A~tnL~qR~~~-----~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a-~~n~~~Ae~LTEtyFYL~K 245 (297)
T COG4785 175 LNE---QKLDPKQAKTNLKQRAEK-----SDKEQWGWNIVEFYLGKISEETLMERLKADA-TDNTSLAEHLTETYFYLGK 245 (297)
T ss_pred HHH---hhCCHHHHHHHHHHHHHh-----ccHhhhhHHHHHHHHhhccHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHH
Confidence 332 334555665433 33322 3444454333 33332223333333333221 111 347788888
Q ss_pred HHHhcCChhHHHHHHHHHhccC
Q 047120 526 ACRNYENLNVGEPVAKHLIGMD 547 (634)
Q Consensus 526 ~~~~~g~~~~a~~~~~~~~~~~ 547 (634)
-+...|+.++|..+|+-++..+
T Consensus 246 ~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 246 YYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHhccccHHHHHHHHHHHHHHh
Confidence 8999999999999999988665
No 330
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=84.08 E-value=34 Score=31.37 Aligned_cols=62 Identities=18% Similarity=0.077 Sum_probs=38.6
Q ss_pred HHHHHHhccCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 047120 490 CMVDILGRAGHIEAARNLIEDM-PMEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551 (634)
Q Consensus 490 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (634)
.+.+.|.+.|.+..|..-+++| ..-|+ ...+-.+..+|...|-.++|...-+-+-...|+++
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 4566777888887777777776 21222 23455566778888888888776654444445544
No 331
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.06 E-value=2 Score=23.95 Aligned_cols=31 Identities=10% Similarity=0.058 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549 (634)
Q Consensus 519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (634)
.|..+...+...|+++.|...++++++..|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3445555666666777777777666665553
No 332
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.86 E-value=3.5 Score=38.03 Aligned_cols=61 Identities=15% Similarity=0.038 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
+++.....|...|.+.+|..+.++++..+|-+...+..|...|...|+--.|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4445556788999999999999999999999999999999999999998888888887743
No 333
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.77 E-value=3.1 Score=35.54 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=38.1
Q ss_pred CCCCCH-HHHHHHHHHHHhcC-----------ChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 512 PMEPND-VIWRTLLSACRNYE-----------NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 512 ~~~p~~-~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
.+.|+. .++.++..++...+ .+++|...|+++...+|.+......|-.. ++|-++..++.+
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~ 135 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHK 135 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHH
Confidence 356663 46666666654332 36778888888888999875444444332 357777777777
Q ss_pred CCCc
Q 047120 580 RNLK 583 (634)
Q Consensus 580 ~~~~ 583 (634)
.+..
T Consensus 136 ~~~~ 139 (186)
T PF06552_consen 136 QGLG 139 (186)
T ss_dssp SSS-
T ss_pred HHhh
Confidence 6654
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.66 E-value=71 Score=34.68 Aligned_cols=138 Identities=16% Similarity=0.167 Sum_probs=67.2
Q ss_pred HHhcCCHHHHHHHHhhCC-CCChhHHHHHHHHHHhCCChHHHHHHHhhCccC-CCChhHHHHHHHHHHhcCCcHHHHHHH
Q 047120 164 YVRCGYLEFARQLFDKMG-IRDSVSYNSMIDGYVKSGNIESARELFDSMPIR-ERNLISWNSVLNGYAQLKSGLQFAWQI 241 (634)
Q Consensus 164 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~p~~~~~~~ll~~~~~~~~~~~~a~~~ 241 (634)
+.+.|++++|...+-+-. .-+. ..+|.-|....+..+-..+++.+.+. -.+...-+.|+.+|.+.++ .+...+.
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd-~~kL~ef 453 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKD-VEKLTEF 453 (933)
T ss_pred HHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcc-hHHHHHH
Confidence 345566666665553322 1111 12333444444444444444444443 2233344566677777666 6666655
Q ss_pred HhhCCCCCc-hHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCC
Q 047120 242 FEKMPERDL-ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK 309 (634)
Q Consensus 242 ~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 309 (634)
.+...+... .-....+..+.+.+-.++|.-+-..... ....... .+-..+++++|++.+..++-
T Consensus 454 I~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~i---lle~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 454 ISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDI---LLEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHH---HHHHhcCHHHHHHHHhcCCH
Confidence 555442111 1133344555555555555555444333 2222222 23456778888888777764
No 335
>PRK10941 hypothetical protein; Provisional
Probab=83.62 E-value=4.8 Score=37.61 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
..+.+-.+|.+.++++.|.++.+.++.+.|++|.-+..-+.+|.+.|.+..|..-++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 45566677899999999999999999999999999999999999999999999988877655
No 336
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=83.34 E-value=3 Score=27.57 Aligned_cols=34 Identities=9% Similarity=0.100 Sum_probs=25.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCCchHH
Q 047120 522 TLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555 (634)
Q Consensus 522 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (634)
.+.-++.+.|++++|.+..+.+++.+|.+..+..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4556788899999999999999999998865443
No 337
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.24 E-value=2.1 Score=26.22 Aligned_cols=29 Identities=10% Similarity=0.092 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047120 518 VIWRTLLSACRNYENLNVGEPVAKHLIGM 546 (634)
Q Consensus 518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 546 (634)
.+++.|...|...|++++|+.+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46777888888888888888888888754
No 338
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.84 E-value=8.1 Score=36.18 Aligned_cols=105 Identities=15% Similarity=0.192 Sum_probs=62.8
Q ss_pred hCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccC---CCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCC
Q 047120 40 TGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFR---EKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVS 116 (634)
Q Consensus 40 ~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 116 (634)
.|.+.+..+-..++..-.....+ ..+...+-++.... ..|+. +-.++++.+.+ -++++++.++..=++-|+-
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~i---dd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEI---DDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred cCCCcceeehhhhhhccccccch---hHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccc
Confidence 35555555555555555545555 55655555543211 11121 12233444433 4667788887777777888
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHhc
Q 047120 117 VDKFSASLVLKACSRLGLIEEGLQIHGLLRKVA 149 (634)
Q Consensus 117 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 149 (634)
||.++++.+|+.+.+.+++..|.++.-.|....
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 888888888888888888887777776666543
No 339
>PRK11619 lytic murein transglycosylase; Provisional
Probab=82.79 E-value=75 Score=34.36 Aligned_cols=58 Identities=10% Similarity=-0.021 Sum_probs=27.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc
Q 047120 352 VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE 410 (634)
Q Consensus 352 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (634)
..-+......++++.+...+..|-... .....-..-+..++...|+.++|...|+.+.
T Consensus 316 e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 316 ERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 333334445556655555555543211 1122222334444444566666666665553
No 340
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.34 E-value=72 Score=33.86 Aligned_cols=244 Identities=11% Similarity=-0.008 Sum_probs=136.0
Q ss_pred chHHHHHHHHHHhcCCCCCCHhHHHHHHHH-HHccCChHHHHHHHHHHHH-------cCCCCchhHHHHHHHHhHhcC--
Q 047120 328 SMKALEIFDNMQCELYLHPDDASLVIVLSA-IAQLGHIDKGVAIHRYLEK-------DQFSLNGKHGVALIDMYSKCG-- 397 (634)
Q Consensus 328 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-- 397 (634)
...|.++++.....+.+.+-...-.....+ .....|.+.|..+++.+.+ .+ .+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 456777777777653332222222222233 4567799999999998876 45 3345556777777643
Q ss_pred ---CHHHHHHHHHhccC-CChhHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCCHHHH
Q 047120 398 ---SIENAIKVFEQIED-GSVDHWNAMINGLAIH---GLGELAFDLLMEMERLSIEPDDITFTGLLNA--CAHAGLVKEG 468 (634)
Q Consensus 398 ---~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~g~~~~a 468 (634)
+.+.|..++.+... .++..-..+...+... .+...|.++|....+.|.. ....+..+... ..-..+.+.|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHH
Confidence 66778988887663 3344444444444332 3578999999999988743 22222222211 1234578899
Q ss_pred HHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC---CCCCCHHHHHHHHH-H---HH-h---cCChhHHH
Q 047120 469 LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM---PMEPNDVIWRTLLS-A---CR-N---YENLNVGE 537 (634)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~-~---~~-~---~g~~~~a~ 537 (634)
..++.++.. .| .|....-...+..+.. ++++.+.-.+..+ +.+ ...+-...+. . .. . ..+.+.+.
T Consensus 384 ~~~~k~aA~-~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~ 459 (552)
T KOG1550|consen 384 FAYYKKAAE-KG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLERAF 459 (552)
T ss_pred HHHHHHHHH-cc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhHHH
Confidence 999999887 34 3332222233344444 6666665544333 211 1111111110 0 11 1 22556666
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHhcC----CCchHHHHHHHHHHhCC
Q 047120 538 PVAKHLIGMDSSNSSSYVLLSNMFAGL----GMWNDARRVRSMMKERN 581 (634)
Q Consensus 538 ~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~ 581 (634)
..+.++...+ ++.....|++.|... .+++.|...+.+....+
T Consensus 460 ~~~~~a~~~g--~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 460 SLYSRAAAQG--NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred HHHHHHHhcc--CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 6666655444 445666677776544 34778888888777666
No 341
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=82.14 E-value=2.1 Score=25.19 Aligned_cols=22 Identities=32% Similarity=0.233 Sum_probs=12.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHH
Q 047120 153 DLFLQNCLISLYVRCGYLEFAR 174 (634)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~ 174 (634)
++..|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455566666666666665554
No 342
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=81.77 E-value=32 Score=29.41 Aligned_cols=47 Identities=28% Similarity=0.241 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh
Q 047120 139 LQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDS 185 (634)
Q Consensus 139 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 185 (634)
.++.+.+.+.++.|+...+..+++.+.+.|++.....++.--.-+|.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DS 60 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDS 60 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCc
Confidence 34555666778888888888888888888888777776655433333
No 343
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.15 E-value=5.1 Score=35.34 Aligned_cols=62 Identities=10% Similarity=-0.009 Sum_probs=39.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047120 489 GCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550 (634)
Q Consensus 489 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (634)
+..+..+.+.+..++|+...++- +.+|. ..+-..++..++-.|++++|..-++-+-++.|..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34455666777777777766543 44444 3344556666777777777777777777776654
No 344
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.85 E-value=21 Score=35.62 Aligned_cols=129 Identities=12% Similarity=0.121 Sum_probs=68.8
Q ss_pred HHHHHcCChHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC
Q 047120 422 NGLAIHGLGELAFDL-LMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500 (634)
Q Consensus 422 ~~~~~~~~~~~A~~~-~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 500 (634)
.--...|+...|-+- +.-+....-.|+...+...| ....|.++.+...+..+.+. +.....+..+++....+.|+
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhh
Confidence 333445666555443 33344333344444333332 45667777777776666542 22234455666677777777
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchH
Q 047120 501 IEAARNLIEDM-PME-PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSY 554 (634)
Q Consensus 501 ~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 554 (634)
+++|...-..| +.+ .++.........-...|-++++.-.+++++.++|+...-|
T Consensus 373 ~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 373 WREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 77777776665 211 2222333233334456667777777777777775544333
No 345
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=80.83 E-value=13 Score=33.49 Aligned_cols=64 Identities=13% Similarity=0.106 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCCh-------hHHHHHHHHHhccC--CCC----CchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 519 IWRTLLSACRNYENL-------NVGEPVAKHLIGMD--SSN----SSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 519 ~~~~l~~~~~~~g~~-------~~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
.+.-+.+.|...|+- ..|...|+++.+.. |.. ....+.++.+..+.|++++|.+.|.++...+-
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 444455556666664 44555555555443 222 23677788889999999999999999876654
No 346
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.80 E-value=18 Score=33.98 Aligned_cols=97 Identities=15% Similarity=0.165 Sum_probs=68.5
Q ss_pred cCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC-C--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 047120 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED-G--------SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP 447 (634)
Q Consensus 377 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 447 (634)
.|.+....+...++..-....++++++..+-++.. + ...+|-.++. .=++++++.++..=+.-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 34455555555666666667778888877766652 1 2223333322 236778888888888889999
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047120 448 DDITFTGLLNACAHAGLVKEGLLCFELMRR 477 (634)
Q Consensus 448 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 477 (634)
|..++..++..+.+.+++.+|.++.-.|..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999998887776654
No 347
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=80.19 E-value=2 Score=34.27 Aligned_cols=36 Identities=42% Similarity=0.743 Sum_probs=30.8
Q ss_pred ceeEEEEcCEEEEEEeCCCCCcchhHHHHHHHhcccCccc
Q 047120 587 GCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDNMWTPDSV 626 (634)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (634)
|++|+.+ |.|++++.+||+.....++...++.|+.-
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~~~~~~~~~~ 37 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINKMKEEGYVPDTK 37 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHHHHHcCCcchhh
Confidence 5788876 99999999999998888888888887754
No 348
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.08 E-value=9.9 Score=37.76 Aligned_cols=130 Identities=15% Similarity=0.151 Sum_probs=83.6
Q ss_pred HhcCCHHHHH-HHHHhcc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 047120 394 SKCGSIENAI-KVFEQIE--DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470 (634)
Q Consensus 394 ~~~~~~~~A~-~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 470 (634)
...|++-.|- +++..+. +.+++........+...|+++.+...+...... +.....+...+++...+.|++++|..
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 3456666554 4444443 234444444445567789999999998877653 45567788999999999999999999
Q ss_pred HHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 047120 471 CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSA 526 (634)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 526 (634)
.-+.|.. ..++ +.+....-...-...|-++++.-.+++. .+ +|...-|...+..
T Consensus 379 ~a~~~l~-~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 379 TAEMMLS-NEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHHHhc-cccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 9988876 3332 3333333333344667889999999887 33 3444445444443
No 349
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=80.07 E-value=2.8 Score=23.82 Aligned_cols=30 Identities=0% Similarity=0.079 Sum_probs=25.0
Q ss_pred CChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 047120 531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560 (634)
Q Consensus 531 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 560 (634)
|+.+.+..+|+++++..|.++..|..++..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888999999999889888888877764
No 350
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.89 E-value=2.8 Score=35.79 Aligned_cols=49 Identities=8% Similarity=0.148 Sum_probs=34.5
Q ss_pred ChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCC-----------chHHHHHHHHHHhC
Q 047120 532 NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGM-----------WNDARRVRSMMKER 580 (634)
Q Consensus 532 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~ 580 (634)
-+++|+.-|++++.++|....++..++.+|...+. +++|.+.|+++.+.
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc
Confidence 35678888899999999999999999999886543 44555555555443
No 351
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=79.14 E-value=3.5 Score=31.02 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=22.3
Q ss_pred HHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 539 VAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 539 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
.+++.++.+|.+......++..+...|++++|.+.+-.+.+.
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344455555555555555555555666666655555555444
No 352
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=78.93 E-value=55 Score=32.37 Aligned_cols=64 Identities=11% Similarity=0.097 Sum_probs=50.0
Q ss_pred CHHHHHHH---HHHHHhcCChhHHHHHHHHHhccCCC-CCchHHHHHHHHh-cCCCchHHHHHHHHHHh
Q 047120 516 NDVIWRTL---LSACRNYENLNVGEPVAKHLIGMDSS-NSSSYVLLSNMFA-GLGMWNDARRVRSMMKE 579 (634)
Q Consensus 516 ~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 579 (634)
|...|.++ +..+.+.|-+..|.++.+-++.++|. ||-.-...++.|+ +.++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44444444 44577899999999999999999998 8887777788776 77888888888887655
No 353
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=78.82 E-value=22 Score=29.50 Aligned_cols=98 Identities=16% Similarity=0.109 Sum_probs=52.9
Q ss_pred HHHHHHHHhCCCCchhh--hhHHHHHhhcCCCCCCHHHHHHHHHhccccC-----CCCCcccHHHHHHHHHcCCC-cchH
Q 047120 32 QIHARMITTGFIKNTHL--TTKLVASFSSSPCTPLTEFARYIFFKYHAFR-----EKKDPFLWNAIIKTYSHGLD-PKEA 103 (634)
Q Consensus 32 ~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-~~~A 103 (634)
.....|.+.+..+++.+ .|.++.-....++. .....+++.+.... -..+...|+.++.+..+... --.+
T Consensus 23 ~~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf---~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~ 99 (145)
T PF13762_consen 23 SHLPYMQEENASQSTKTIFINCILNHLASYQNF---SGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTS 99 (145)
T ss_pred HHHHHhhhcccChhHHHHHHHHHHHHHHHccch---HHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHH
Confidence 33344455555555532 36666665555555 44444444432111 12345567777777755544 2245
Q ss_pred HHHHHHHHHCCCCCCcchHHHHHHHHhcc
Q 047120 104 LVMFCLMLDNGVSVDKFSASLVLKACSRL 132 (634)
Q Consensus 104 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 132 (634)
..+|+-|.+.+.+++..-|..++.++.+.
T Consensus 100 ~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 100 LTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 56666666666666666777777666654
No 354
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.56 E-value=27 Score=36.10 Aligned_cols=99 Identities=15% Similarity=0.135 Sum_probs=48.8
Q ss_pred hcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 047120 395 KCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFEL 474 (634)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 474 (634)
+.|+++.|.++..+. .+..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+-+.-..+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 445555555544332 2344466666666666666666666665443 33344444445554443333333
Q ss_pred hHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC
Q 047120 475 MRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM 511 (634)
Q Consensus 475 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 511 (634)
..+ .|. .+ .-.-+|...|+++++.+++.+-
T Consensus 718 ~~~-~g~-~N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 718 AKK-QGK-NN-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHh-hcc-cc-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 333 221 11 1223455566666666666555
No 355
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.49 E-value=13 Score=30.12 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=35.1
Q ss_pred ccChhHHHHHHHHHhccCCHH---HHHHHHHhC-C-CCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 047120 482 EPELQHYGCMVDILGRAGHIE---AARNLIEDM-P-MEPND--VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551 (634)
Q Consensus 482 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~-~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (634)
.++..+--.+..++.+..+.+ +.+.++++. + -.|+. .....|.-++.+.|+++.+.++.+.+++.+|+|+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 344444445555555554433 344455544 2 22321 2233344456666666666666666666666554
No 356
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.69 E-value=32 Score=35.58 Aligned_cols=16 Identities=19% Similarity=-0.047 Sum_probs=7.6
Q ss_pred HhccCCHHHHHHHHHH
Q 047120 459 CAHAGLVKEGLLCFEL 474 (634)
Q Consensus 459 ~~~~g~~~~a~~~~~~ 474 (634)
+...|+++++.+++..
T Consensus 731 ~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 731 YFLSGDYEECLELLIS 746 (794)
T ss_pred HHHcCCHHHHHHHHHh
Confidence 3344555555544443
No 357
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.52 E-value=14 Score=28.28 Aligned_cols=47 Identities=15% Similarity=0.281 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHH
Q 047120 512 PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558 (634)
Q Consensus 512 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 558 (634)
.+-|++....+.+.+|++.+++..|+++++-+...-.+....|..+.
T Consensus 40 DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 40 DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 46688888888889999999999999998877655444443555444
No 358
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.09 E-value=4.5 Score=25.49 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120 555 VLLSNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 555 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
..|+.+|...|+.+.|.+++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 457788888888888888888876543
No 359
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.68 E-value=9.2 Score=34.47 Aligned_cols=60 Identities=10% Similarity=-0.017 Sum_probs=48.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 523 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
....+...|++-++++....++...|.+..+|+.-+.+.+..=+.++|..-|.+..+...
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 344456788999999999999999999998998888888888788888888888766654
No 360
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.19 E-value=2.6 Score=39.87 Aligned_cols=87 Identities=14% Similarity=0.240 Sum_probs=54.7
Q ss_pred ccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHH
Q 047120 497 RAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVR 574 (634)
Q Consensus 497 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 574 (634)
..|.+++|++.+... ...|. ...|..-.+++.+.+....|++-+..+++++|+...-|-.-+.+..-.|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 345566666666555 33333 3445555556666677777777777777777776666666666666667777777777
Q ss_pred HHHHhCCCc
Q 047120 575 SMMKERNLK 583 (634)
Q Consensus 575 ~~~~~~~~~ 583 (634)
....+.+..
T Consensus 206 ~~a~kld~d 214 (377)
T KOG1308|consen 206 ALACKLDYD 214 (377)
T ss_pred HHHHhcccc
Confidence 766666554
No 361
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.15 E-value=24 Score=31.04 Aligned_cols=73 Identities=8% Similarity=-0.026 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC--cccChhHHHHHHHHHhccCCHHHH
Q 047120 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK--LEPELQHYGCMVDILGRAGHIEAA 504 (634)
Q Consensus 431 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 504 (634)
+.|...|-.+...+.--++.....|..-|. ..+.++++.++..+.+... -.+|+..+.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 444555555544443323333333332222 4445555555544443211 123444555555555555555444
No 362
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.72 E-value=41 Score=34.62 Aligned_cols=94 Identities=18% Similarity=0.222 Sum_probs=61.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhC---------C-------------CCCCHH-HHHHH---HHHHHhcCChhHHHHHH
Q 047120 487 HYGCMVDILGRAGHIEAARNLIEDM---------P-------------MEPNDV-IWRTL---LSACRNYENLNVGEPVA 540 (634)
Q Consensus 487 ~~~~l~~~~~~~g~~~~A~~~~~~~---------~-------------~~p~~~-~~~~l---~~~~~~~g~~~~a~~~~ 540 (634)
+.-.+.+.+..+|+.+.|..++++. + ..|... .|.+| +..+.+.|-+..|.++.
T Consensus 286 sLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~c 365 (665)
T KOG2422|consen 286 SLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWC 365 (665)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 3445556666777776666655443 0 122222 23322 23345678888888888
Q ss_pred HHHhccCCC-CCchHHHHHHHHh-cCCCchHHHHHHHHHHhC
Q 047120 541 KHLIGMDSS-NSSSYVLLSNMFA-GLGMWNDARRVRSMMKER 580 (634)
Q Consensus 541 ~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~ 580 (634)
+.+++++|. ||-....+++.|+ +..+|+-.+++++.....
T Consensus 366 KlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 366 KLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred HHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 888888887 8888888888776 677788888888777443
No 363
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.71 E-value=95 Score=31.44 Aligned_cols=158 Identities=16% Similarity=0.145 Sum_probs=100.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHH-------HHHHHH-HHHhccCCHHHHHHHHHHhHHhcCcccChh--
Q 047120 418 NAMINGLAIHGLGELAFDLLMEMERLSI-EPDDI-------TFTGLL-NACAHAGLVKEGLLCFELMRRIHKLEPELQ-- 486 (634)
Q Consensus 418 ~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~-------~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-- 486 (634)
..++.+-.-.|++.+|++-+..|.+.-. .|.+. ....++ .-|+..+.++.|...|..+.+. --.-|..
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl~a~ 405 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL-TESIDLQAF 405 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh-hhHHHHHHH
Confidence 3344444567999999999999886422 33311 122233 3355678899999988887762 1122322
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHH--------HHHH--HHhcCChhHHHHHHHHHhccCC-C-----C
Q 047120 487 HYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRT--------LLSA--CRNYENLNVGEPVAKHLIGMDS-S-----N 550 (634)
Q Consensus 487 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~--------l~~~--~~~~g~~~~a~~~~~~~~~~~p-~-----~ 550 (634)
.-..+.-.|.+.|+-+.--++++.++ +|+..++.+ ++.+ ....+++.+|.+.+.+.++... . .
T Consensus 406 ~nlnlAi~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~ 484 (629)
T KOG2300|consen 406 CNLNLAISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLT 484 (629)
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHH
Confidence 23456677899999888888888884 232221111 1122 2468999999999999987751 1 1
Q ss_pred CchHHHHHHHHhcCCCchHHHHHHHHH
Q 047120 551 SSSYVLLSNMFAGLGMWNDARRVRSMM 577 (634)
Q Consensus 551 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 577 (634)
.-....|+.++...|+..++.+...-.
T Consensus 485 a~~LvLLs~v~lslgn~~es~nmvrpa 511 (629)
T KOG2300|consen 485 ACSLVLLSHVFLSLGNTVESRNMVRPA 511 (629)
T ss_pred HHHHHHHHHHHHHhcchHHHHhccchH
Confidence 224556777888888888887766444
No 364
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=75.10 E-value=20 Score=27.11 Aligned_cols=43 Identities=12% Similarity=0.150 Sum_probs=23.5
Q ss_pred HHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHH
Q 047120 104 LVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLR 146 (634)
Q Consensus 104 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 146 (634)
..-++.+....+.|++....+.+++|.+.+|+..|.++++-++
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444444555555555555556655555555555555544
No 365
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=74.97 E-value=56 Score=30.71 Aligned_cols=115 Identities=16% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccc-cCCCCCcccHHHHHHHHHc-CCCcchHHHHHHHHHHCC--CCCCcchHHHHHHHHhccCChHHHHH
Q 047120 65 TEFARYIFFKYHA-FREKKDPFLWNAIIKTYSH-GLDPKEALVMFCLMLDNG--VSVDKFSASLVLKACSRLGLIEEGLQ 140 (634)
Q Consensus 65 ~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~ 140 (634)
+.+|+++|+.... ..+-.|..+-..+++.... .+..-.|+.-+-...... -.++..+...++..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Q ss_pred HHHHHHHh-cCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 047120 141 IHGLLRKV-AFGSDLFLQNCLISLYVRCGYLEFARQLFDK 179 (634)
Q Consensus 141 ~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 179 (634)
+++..... +...|...|..+|......||..-..++.++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
No 366
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.86 E-value=63 Score=28.92 Aligned_cols=127 Identities=17% Similarity=0.128 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHh-cCcccChhHHHHHHHH
Q 047120 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRI-HKLEPELQHYGCMVDI 494 (634)
Q Consensus 417 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~ 494 (634)
.+..++.+.+.+...+|+...++-.+. +|+ ..+-..++..++-.|+|++|..-++.+... ....+...+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345566777888889999888877765 555 446677888899999999999888877552 0112234445555543
Q ss_pred HhccCCHHHHH-HHHHhC--C---CCCCHHHHHH-HHHH--HHhcCChhHHHHHHHHHhccCCCCCch
Q 047120 495 LGRAGHIEAAR-NLIEDM--P---MEPNDVIWRT-LLSA--CRNYENLNVGEPVAKHLIGMDSSNSSS 553 (634)
Q Consensus 495 ~~~~g~~~~A~-~~~~~~--~---~~p~~~~~~~-l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~ 553 (634)
+.+. ++|.-- + ..|. ..|.. |..+ |...|.-+.+..+-+.+++..|..+..
T Consensus 82 -------ea~R~evfag~~~Pgflg~p~-p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG~ 141 (273)
T COG4455 82 -------EAARNEVFAGGAVPGFLGGPS-PEWVAALLAALALHSDGAGEARTALREQALKAAPVPIGH 141 (273)
T ss_pred -------HHHHHHHhccCCCCCCcCCCC-HHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCcc
Confidence 2222 223221 1 1122 33433 3333 333445555666667777777765543
No 367
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.79 E-value=4.9 Score=22.16 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=25.3
Q ss_pred chHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 552 SSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
..|..++..+...|++++|...+++..+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999888654
No 368
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=73.00 E-value=1.1e+02 Score=30.71 Aligned_cols=362 Identities=13% Similarity=0.041 Sum_probs=0.0
Q ss_pred hHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 047120 50 TKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKAC 129 (634)
Q Consensus 50 ~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 129 (634)
|-++..|...|+. .+|-++..++ ..+..+...+-+++.-.+.-..|..+.-.+...+...+-.+-+.+.+++
T Consensus 218 n~~l~eyv~~get---rea~rciR~L-----~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGf 289 (645)
T KOG0403|consen 218 NGNLIEYVEIGET---REACRCIREL-----GVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGF 289 (645)
T ss_pred HHHHHHHHHcccH---HHHHHHHHHh-----CCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCc
Q ss_pred hccC--------ChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCh
Q 047120 130 SRLG--------LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNI 201 (634)
Q Consensus 130 ~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 201 (634)
.+.+ +...|...++.+.-..+.-.----+++-..-...|+.+. .+.|++ ....+|+-|...|+.
T Consensus 290 sr~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk-------~~~~IIqEYFlsgDt 361 (645)
T KOG0403|consen 290 SRKGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKK-------DLTPIIQEYFLSGDT 361 (645)
T ss_pred hhhccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHH-------hhHHHHHHHHhcCCh
Q ss_pred HHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhc--CChHHHHHHHhhCCCC
Q 047120 202 ESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKC--GKMDDAQALFDKMPKR 279 (634)
Q Consensus 202 ~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~ 279 (634)
.+.++.++.+....-+....-.++......++.-.+...+|-.-......+-..+.+++... .-.+.|+.+...-..-
T Consensus 362 ~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a~~el 441 (645)
T KOG0403|consen 362 PEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRASQEL 441 (645)
T ss_pred HHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccccccHHHH
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHH
Q 047120 280 DVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIA 359 (634)
Q Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 359 (634)
....-.++++.-...-++++...-+... .....+....-.......--++-+..|-.--....+.--..-...++.-|.
T Consensus 442 alFlARAViDdVLap~~leei~~~lp~~-s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~ 520 (645)
T KOG0403|consen 442 ALFLARAVIDDVLAPTNLEEISGTLPPV-SQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYE 520 (645)
T ss_pred HHHHHHHHhhcccccCcHHHHcCCCCCc-hhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHHH
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCC
Q 047120 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGL 429 (634)
Q Consensus 360 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 429 (634)
..|+..+|....+++----+. ...++.+++....+.|+-...+.+++..-..+..+-+.|-.+|.+..+
T Consensus 521 ~~GdisEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV~d 589 (645)
T KOG0403|consen 521 LSGDISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFERVYD 589 (645)
T ss_pred hccchHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhhhhc
No 369
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=72.21 E-value=93 Score=29.71 Aligned_cols=24 Identities=8% Similarity=0.019 Sum_probs=11.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHH
Q 047120 451 TFTGLLNACAHAGLVKEGLLCFEL 474 (634)
Q Consensus 451 ~~~~ll~~~~~~g~~~~a~~~~~~ 474 (634)
.+.....-|++-|+-+.|.+.+..
T Consensus 106 a~~~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHH
Confidence 334444445555555555544443
No 370
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.87 E-value=2.6e+02 Score=34.79 Aligned_cols=109 Identities=8% Similarity=-0.009 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC--CCCCC--------HH
Q 047120 449 DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM--PMEPN--------DV 518 (634)
Q Consensus 449 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~--------~~ 518 (634)
..+|....+..-..|.++.|...+-.+.+ .+ .| ..+.-.++.+...|+...|+.++++. ...|+ +.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e-~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKE-SR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhh-cc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 34777778878888888888887777665 22 33 34555667788888888888888765 11111 22
Q ss_pred HHHHHHH--------HH-HhcC--ChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 047120 519 IWRTLLS--------AC-RNYE--NLNVGEPVAKHLIGMDSSNSSSYVLLSNMF 561 (634)
Q Consensus 519 ~~~~l~~--------~~-~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (634)
.-+.++. -| ...| ..+.-++.|+.+.+..|.....++.++.-|
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 2222111 11 1233 345667788888888887777777777443
No 371
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.80 E-value=6 Score=28.52 Aligned_cols=45 Identities=4% Similarity=0.039 Sum_probs=24.2
Q ss_pred hcCChhHHHHHHHHHhccCCCCCchHH---HHHHHHhcCCCchHHHHH
Q 047120 529 NYENLNVGEPVAKHLIGMDSSNSSSYV---LLSNMFAGLGMWNDARRV 573 (634)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~ 573 (634)
...+.+.|+..++++++..++.+.-+. .|+.+|+..|++.+.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666665555444333 333445555666555544
No 372
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=71.38 E-value=96 Score=29.55 Aligned_cols=148 Identities=11% Similarity=-0.149 Sum_probs=80.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccC-----
Q 047120 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAH----AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG----- 499 (634)
Q Consensus 429 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 499 (634)
+..+|..+++.+.+.|.. .....+...+.. ..+..+|..+++.+.+ .|..+.......+...|...+
T Consensus 92 ~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~-~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 92 DKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPLDLVKALKYYEKAAK-LGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHcChhhhcc
Confidence 355566666655554421 122223333322 3366777777777666 343332122333344443321
Q ss_pred --CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCC--------
Q 047120 500 --HIEAARNLIEDMPMEPNDVIWRTLLSACRN----YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG-------- 565 (634)
Q Consensus 500 --~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 565 (634)
+...|...+.++-..-+......+...|.. ..+.++|...|+++.+.+. +.....++ .+...|
T Consensus 168 ~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 168 AYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred cHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhh
Confidence 223577777766222344444445544432 3478888999988888877 56666666 554444
Q ss_pred -------CchHHHHHHHHHHhCCCc
Q 047120 566 -------MWNDARRVRSMMKERNLK 583 (634)
Q Consensus 566 -------~~~~A~~~~~~~~~~~~~ 583 (634)
+...|...+...-..+..
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCh
Confidence 666777777777666654
No 373
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.92 E-value=73 Score=27.97 Aligned_cols=55 Identities=15% Similarity=0.011 Sum_probs=26.9
Q ss_pred HHHHhHhcCCHHHHHHHHHhccCCChhH--HHHHHHHHHHcCChHHHHHHHHHHHHC
Q 047120 389 LIDMYSKCGSIENAIKVFEQIEDGSVDH--WNAMINGLAIHGLGELAFDLLMEMERL 443 (634)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~m~~~ 443 (634)
|.......|.+++|+..++....++... ...-.+.+...|+-++|..-|++....
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 3444445555555555555555443332 222234455555555555555555544
No 374
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=70.57 E-value=61 Score=34.60 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCH----------hHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 047120 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD----------ASLVIVLSAIAQLGHIDKGVAIHRYLEKD 377 (634)
Q Consensus 314 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 377 (634)
+-..++..|....+++..+++.+.+..- ||. ..|...++--.+.|+-++|....-.+.+.
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i----P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~ 272 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI----PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEK 272 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC----cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHh
Confidence 4445566666677777777777777632 332 12333444445567777777766655543
No 375
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=70.41 E-value=1.3e+02 Score=30.74 Aligned_cols=158 Identities=9% Similarity=-0.015 Sum_probs=72.0
Q ss_pred CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHHH
Q 047120 347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMING 423 (634)
Q Consensus 347 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~ 423 (634)
|.....+++..+.......-.+.+..+|...| -+...+..++++|... ..+.-..+|+++.+ .|++.-..|+.-
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 44455555666665555556666666665544 2344555556666555 44445555554432 233333333333
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc
Q 047120 424 LAIHGLGELAFDLLMEMERLSIEPDD------ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497 (634)
Q Consensus 424 ~~~~~~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 497 (634)
|-+ ++.+.+..+|.+.... +-|.. ..|.-+... -..+.+...++...+..+.|...-...+.-+-.-|..
T Consensus 142 yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 333 5555555555555443 11110 122222211 1233444444444444433333333334444444555
Q ss_pred cCCHHHHHHHHHhC
Q 047120 498 AGHIEAARNLIEDM 511 (634)
Q Consensus 498 ~g~~~~A~~~~~~~ 511 (634)
..++++|++++..+
T Consensus 218 ~eN~~eai~Ilk~i 231 (711)
T COG1747 218 NENWTEAIRILKHI 231 (711)
T ss_pred ccCHHHHHHHHHHH
Confidence 55555555555443
No 376
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=69.24 E-value=17 Score=34.42 Aligned_cols=90 Identities=10% Similarity=0.044 Sum_probs=65.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 047120 488 YGCMVDILGRAGHIEAARNLIEDM----PMEPN--DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF 561 (634)
Q Consensus 488 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (634)
|--=++-|.+..++..|...|.+. .-.|| .+.|+.-..+-...|++..++.-..+++..+|....+|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 444456677888888888888775 12333 556777776667788999999999999999998888888888888
Q ss_pred hcCCCchHHHHHHHHH
Q 047120 562 AGLGMWNDARRVRSMM 577 (634)
Q Consensus 562 ~~~g~~~~A~~~~~~~ 577 (634)
....++++|....+..
T Consensus 164 ~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 8877766655555443
No 377
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=68.21 E-value=4 Score=40.58 Aligned_cols=100 Identities=5% Similarity=-0.010 Sum_probs=72.2
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCcccChh-HHHHHHHHHhccCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcC
Q 047120 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQ-HYGCMVDILGRAGHIEAARNLIEDM-PMEPND-VIWRTLLSACRNYE 531 (634)
Q Consensus 455 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g 531 (634)
-+......+.++.|..++.++.+. .|+-. .|..=..++.+.+++..|+.=+.++ ...|.. ..|.--..+|...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 355666788899999999998873 56533 3444447788899988888766555 555653 34544556677888
Q ss_pred ChhHHHHHHHHHhccCCCCCchHHHH
Q 047120 532 NLNVGEPVAKHLIGMDSSNSSSYVLL 557 (634)
Q Consensus 532 ~~~~a~~~~~~~~~~~p~~~~~~~~l 557 (634)
.+.+|...|+......|.++..-..+
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 99999999999999999887655444
No 378
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=68.18 E-value=24 Score=36.25 Aligned_cols=86 Identities=15% Similarity=0.121 Sum_probs=61.6
Q ss_pred hccCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHH
Q 047120 496 GRAGHIEAARNLIEDM-PMEPN--DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARR 572 (634)
Q Consensus 496 ~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 572 (634)
.-.|+...|.+.+..+ ...|. .+....|.....+.|-...|-.++.+.+.+....|-++..++++|....+++.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 3467888888877766 33333 23445566666777777788888888887777777788888888888888888888
Q ss_pred HHHHHHhCC
Q 047120 573 VRSMMKERN 581 (634)
Q Consensus 573 ~~~~~~~~~ 581 (634)
.|+.+.+..
T Consensus 698 ~~~~a~~~~ 706 (886)
T KOG4507|consen 698 AFRQALKLT 706 (886)
T ss_pred HHHHHHhcC
Confidence 887776654
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.52 E-value=14 Score=26.66 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=7.6
Q ss_pred ccCCHHHHHHHHHHhHH
Q 047120 461 HAGLVKEGLLCFELMRR 477 (634)
Q Consensus 461 ~~g~~~~a~~~~~~~~~ 477 (634)
...+.++|+..|..+.+
T Consensus 18 ~~~~~~~Al~~W~~aL~ 34 (80)
T PF10579_consen 18 HQNETQQALQKWRKALE 34 (80)
T ss_pred ccchHHHHHHHHHHHHh
Confidence 33444444444444443
No 380
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=67.35 E-value=15 Score=37.68 Aligned_cols=101 Identities=11% Similarity=0.101 Sum_probs=72.7
Q ss_pred ccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHH
Q 047120 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-P-MEPNDVIWRTLLSACRNYENLNVGEP 538 (634)
Q Consensus 461 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~ 538 (634)
..|+...|...+..+........+ .....|...+.+.|...+|-.++.+. . ..-.+.++..+..++.-..+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~-v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQD-VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhc-ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 468888888888777543222222 23445677777888888888877654 2 23345677888888888899999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHh
Q 047120 539 VAKHLIGMDSSNSSSYVLLSNMFA 562 (634)
Q Consensus 539 ~~~~~~~~~p~~~~~~~~l~~~~~ 562 (634)
.++.+++..|.++..-..|..+-+
T Consensus 698 ~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999887777666544
No 381
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=67.25 E-value=79 Score=30.11 Aligned_cols=34 Identities=3% Similarity=0.014 Sum_probs=20.8
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHH------HhcCCCch
Q 047120 535 VGEPVAKHLIGMDSSNSSSYVLLSNM------FAGLGMWN 568 (634)
Q Consensus 535 ~a~~~~~~~~~~~p~~~~~~~~l~~~------~~~~g~~~ 568 (634)
.|.+.+.++++.+|--|.....+-.+ ..+.|+.+
T Consensus 380 ~AvEAihRAvEFNPHVPkYLLE~kslIlPPEHiLKRGDSE 419 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSE 419 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHHHHHHhccCCHHHHhhcccHH
Confidence 46677788888888766654443322 34556654
No 382
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.06 E-value=1.5e+02 Score=30.12 Aligned_cols=121 Identities=14% Similarity=-0.019 Sum_probs=66.7
Q ss_pred HHHcCCchHHHHHHHHHHhcCCCCCCHh-------HHHHH-HHHHHccCChHHHHHHHHHHHHcCCCCchhHHH--HHHH
Q 047120 322 YVRNGYSMKALEIFDNMQCELYLHPDDA-------SLVIV-LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV--ALID 391 (634)
Q Consensus 322 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~-------~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~ 391 (634)
-.-.|++.+|++-...|.+-..-.|... ....+ ...|...+.++.|+.-|....+.--..|...+. .+.-
T Consensus 333 ~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi 412 (629)
T KOG2300|consen 333 RLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAI 412 (629)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHH
Confidence 3447888888888888875423344421 11222 233456677888887777666554344443332 3455
Q ss_pred HhHhcCCHHHHHHHHHhccCCChhHHHH----------HHHHHHHcCChHHHHHHHHHHHH
Q 047120 392 MYSKCGSIENAIKVFEQIEDGSVDHWNA----------MINGLAIHGLGELAFDLLMEMER 442 (634)
Q Consensus 392 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~----------li~~~~~~~~~~~A~~~~~~m~~ 442 (634)
.|.+.|+-+.-.++++.+..++..++.. -.--....+++.+|..++.+-.+
T Consensus 413 ~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 413 SYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 6777777777777777776543322111 01111234566666666655443
No 383
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=65.37 E-value=16 Score=23.03 Aligned_cols=24 Identities=25% Similarity=0.050 Sum_probs=14.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC
Q 047120 420 MINGLAIHGLGELAFDLLMEMERL 443 (634)
Q Consensus 420 li~~~~~~~~~~~A~~~~~~m~~~ 443 (634)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666666543
No 384
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=63.99 E-value=18 Score=27.46 Aligned_cols=54 Identities=6% Similarity=0.066 Sum_probs=34.3
Q ss_pred HHhcCChhHHHHHHHHHhccCCCC---------CchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 527 CRNYENLNVGEPVAKHLIGMDSSN---------SSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
..+.|++..|.+.+.+.++..... ......++.+....|++++|.+.+++..+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345677777777766666543211 123345666677888888888888877543
No 385
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=63.79 E-value=71 Score=25.42 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=13.0
Q ss_pred HHHHhcCCCchHHHHHHHHH
Q 047120 558 SNMFAGLGMWNDARRVRSMM 577 (634)
Q Consensus 558 ~~~~~~~g~~~~A~~~~~~~ 577 (634)
+.++...|+.++|...|+..
T Consensus 107 a~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 107 AVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHH
Confidence 44566777888777777654
No 386
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=63.69 E-value=1.8e+02 Score=29.84 Aligned_cols=174 Identities=10% Similarity=0.073 Sum_probs=105.8
Q ss_pred ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047120 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI 390 (634)
Q Consensus 311 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 390 (634)
|-...-+++..+..+-.+.-...+..+|..- .-+...|..++.+|... ..+.-..+|+++.+..+. |+..-..|+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~---~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY---GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 3344556677777777777777788888743 45666777777777766 566777778877776543 444455566
Q ss_pred HHhHhcCCHHHHHHHHHhccCC------Ch---hHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHh
Q 047120 391 DMYSKCGSIENAIKVFEQIEDG------SV---DHWNAMINGLAIHGLGELAFDLLMEMERL-SIEPDDITFTGLLNACA 460 (634)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~~~------~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~ 460 (634)
..|.+ ++.+.+..+|.++... +. ..|..+...- ..+.+..+.+..++... |..--...+--+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 66655 7777777777766421 11 1455554321 24566666666665543 22333445555666777
Q ss_pred ccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHH
Q 047120 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494 (634)
Q Consensus 461 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 494 (634)
...++++|++++..+.+. -..|...-..++..
T Consensus 217 ~~eN~~eai~Ilk~il~~--d~k~~~ar~~~i~~ 248 (711)
T COG1747 217 ENENWTEAIRILKHILEH--DEKDVWARKEIIEN 248 (711)
T ss_pred cccCHHHHHHHHHHHhhh--cchhhhHHHHHHHH
Confidence 788888888888877762 13344444444443
No 387
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=62.49 E-value=24 Score=26.16 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=19.6
Q ss_pred cCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHH
Q 047120 294 LGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKA 331 (634)
Q Consensus 294 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 331 (634)
.|+.+.|..+++.++ +.+..|..++.++...|+-+-|
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 355555555555555 5555555555555555544433
No 388
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=62.44 E-value=96 Score=28.24 Aligned_cols=115 Identities=14% Similarity=0.022 Sum_probs=71.3
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhH-HHHHHHHHhccCC
Q 047120 423 GLAIHGLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH-YGCMVDILGRAGH 500 (634)
Q Consensus 423 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~ 500 (634)
.|....+++.|+..|.+.+. +.|+.. -|..-+.++.+..+++.+..--..+.. +.|+... ...+...+.....
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq---l~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ---LDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh---cChHHHHHHHHHHHHHHhhcc
Confidence 34455667888887766665 577764 455666677777888777766555544 3555332 3345556666777
Q ss_pred HHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047120 501 IEAARNLIEDM-------PMEPNDVIWRTLLSACRNYENLNVGEPVAKH 542 (634)
Q Consensus 501 ~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 542 (634)
+++|+..+++. +..|....+..|..+-...=...+..++.++
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 77777777665 3445556666676665554455556655554
No 389
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=61.77 E-value=14 Score=34.55 Aligned_cols=80 Identities=9% Similarity=0.076 Sum_probs=57.0
Q ss_pred cccChhHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHH
Q 047120 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDM--PMEPNDVIWRT-LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557 (634)
Q Consensus 481 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 557 (634)
+..|+..|...+..-.+.|.+.+.-.++.+. ..+.|+..|-. ...-+...++++.+..++.+.++.+|.+|..|..+
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 4456666776666666777777777777776 33334555543 22235678999999999999999999999988876
Q ss_pred HHH
Q 047120 558 SNM 560 (634)
Q Consensus 558 ~~~ 560 (634)
..+
T Consensus 183 fr~ 185 (435)
T COG5191 183 FRM 185 (435)
T ss_pred HHH
Confidence 654
No 390
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=60.86 E-value=1.9e+02 Score=29.22 Aligned_cols=28 Identities=11% Similarity=-0.219 Sum_probs=11.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 047120 153 DLFLQNCLISLYVRCGYLEFARQLFDKM 180 (634)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~~~~~~ 180 (634)
+..+....+.++...++.+....+...+
T Consensus 99 ~~~vr~aaa~ALg~i~~~~a~~~L~~~L 126 (410)
T TIGR02270 99 PEGLCAGIQAALGWLGGRQAEPWLEPLL 126 (410)
T ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHh
Confidence 3334444444444444443333333333
No 391
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.64 E-value=32 Score=30.46 Aligned_cols=37 Identities=5% Similarity=-0.014 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047120 512 PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548 (634)
Q Consensus 512 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 548 (634)
...|++.+|..++.++...|+.++|.+..+++....|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4467777777777777777888888888777777777
No 392
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=60.34 E-value=59 Score=26.09 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHH
Q 047120 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV 492 (634)
Q Consensus 432 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 492 (634)
+..+-+..+..-.+.|++......+++|-+.+++..|.++|+-++.+.| +....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHH
Confidence 4555666677777899999999999999999999999999999887543 3333565554
No 393
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.09 E-value=1.2e+02 Score=28.43 Aligned_cols=83 Identities=6% Similarity=-0.092 Sum_probs=44.6
Q ss_pred HHHhHhcCCHHHHHHHH----HhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-----
Q 047120 390 IDMYSKCGSIENAIKVF----EQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA----- 460 (634)
Q Consensus 390 ~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~----- 460 (634)
|.+++..|++.+++... +.-.+-.+.....=|-.|.+.+++..+.++-.......-.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 56666777776665433 222233444555556666677777666666666554322222234555444433
Q ss_pred ccCCHHHHHHHH
Q 047120 461 HAGLVKEGLLCF 472 (634)
Q Consensus 461 ~~g~~~~a~~~~ 472 (634)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 356666666655
No 394
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=59.59 E-value=2.1e+02 Score=29.29 Aligned_cols=239 Identities=11% Similarity=0.070 Sum_probs=134.7
Q ss_pred HHHHHHHHHhcCCCCCCHhHHHHHHHHHHccC------ChHHHHHHHHHHHHc-CCCC-chhHHHHHHHHhHhcCCHH-H
Q 047120 331 ALEIFDNMQCELYLHPDDASLVIVLSAIAQLG------HIDKGVAIHRYLEKD-QFSL-NGKHGVALIDMYSKCGSIE-N 401 (634)
Q Consensus 331 A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~-~ 401 (634)
...+|+..... .|+...+...|..|...- .+.....+++...+. +..+ ....|..+.-++....... -
T Consensus 301 ~~~v~ee~v~~---l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 301 CCAVYEEAVKT---LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 34666666532 455556666666654322 333344455544442 2333 3456666666666655543 3
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHc-CChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHH--HHHHHhH
Q 047120 402 AIKVFEQIEDGSVDHWNAMINGLAIH-GLGELAF-DLLMEMERLSIEPDDITFTGLLNACAHAGL-VKEGL--LCFELMR 476 (634)
Q Consensus 402 A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~A~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~--~~~~~~~ 476 (634)
|..+..+....+...|-.-+...... .+++--. +++......-..+-...|+... .|+ ..... .++....
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~ 452 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALL 452 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHH
Confidence 44554455566777666655555532 2222211 2223333221222223333333 222 11111 1222222
Q ss_pred HhcCcccChhH-HHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH--hcCChhHHHHHHHHHhccCCCCC
Q 047120 477 RIHKLEPELQH-YGCMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSACR--NYENLNVGEPVAKHLIGMDSSNS 551 (634)
Q Consensus 477 ~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~ 551 (634)
+ -..|+..+ -+.+++-+.+.|-..+|.+.+... .. +|+...|..++..-. ..-+...+..+|+.+..-...++
T Consensus 453 s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 453 S--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred H--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence 2 12344444 467788888999999999999887 22 456677777776532 22348888999999988777889
Q ss_pred chHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 552 SSYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
..|..+...-...|..+.+-.++-++.+
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 9999888888888998888887766643
No 395
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.57 E-value=2.2e+02 Score=29.45 Aligned_cols=69 Identities=19% Similarity=0.171 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHH--HHhcCChhHHHHHHHHHhccC------C-CCCchHHHHHHHHhcCCC-chHHHHHHHHHHhCCC
Q 047120 514 EPNDVIWRTLLSA--CRNYENLNVGEPVAKHLIGMD------S-SNSSSYVLLSNMFAGLGM-WNDARRVRSMMKERNL 582 (634)
Q Consensus 514 ~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~------p-~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~ 582 (634)
++|......++.+ +.+.|+...|...++...+.. + .-|.+++.++..|...|. ..++..++.++++.+-
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 5666666666655 467999999999998887442 1 246689999999998888 9999999999988753
No 396
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=59.11 E-value=15 Score=29.64 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=25.1
Q ss_pred HcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 047120 95 SHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKAC 129 (634)
Q Consensus 95 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 129 (634)
...|.-..|..+|++|+++|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3447778899999999999988875 56666543
No 397
>PRK10941 hypothetical protein; Provisional
Probab=58.59 E-value=42 Score=31.51 Aligned_cols=65 Identities=12% Similarity=0.046 Sum_probs=42.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCch
Q 047120 489 GCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS 553 (634)
Q Consensus 489 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 553 (634)
+.+-.+|.+.++++.|+++.+.+ .+.|+ +.-+.--.-.|.+.|.+..|..-++.-++.-|.+|.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 34555667777777777777766 33444 4445555555777777777777777777777766654
No 398
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=58.08 E-value=1.8e+02 Score=28.09 Aligned_cols=112 Identities=16% Similarity=-0.059 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhHHhcCc---ccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 047120 465 VKEGLLCFELMRRIHKL---EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAK 541 (634)
Q Consensus 465 ~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 541 (634)
.+.|.+.|+.......- ..+......+.....+.|..+.-..+++.....++...-..++.++....+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56777777777652111 335556666777778888876666666665546677788888888888889999999999
Q ss_pred HHhccCCCCCchHHHHHHHHhcCCCc--hHHHHHHHH
Q 047120 542 HLIGMDSSNSSSYVLLSNMFAGLGMW--NDARRVRSM 576 (634)
Q Consensus 542 ~~~~~~p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~ 576 (634)
.++..+.........+...+...+.. +-+.++++.
T Consensus 226 ~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 226 LLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
Confidence 99885423333333333334323333 556665543
No 399
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.91 E-value=1.3e+02 Score=31.05 Aligned_cols=114 Identities=11% Similarity=-0.014 Sum_probs=65.8
Q ss_pred hHHHHHHhccCchH-------HH-HHHHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccH
Q 047120 16 STLLLLRKCKTLND-------VN-QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLW 87 (634)
Q Consensus 16 ~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 87 (634)
..-.+.++|..+.. .. .+-..+.+.|+..+..+...+++. ..|+. ..|+.++++..... ....++
T Consensus 164 I~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~---RdAL~lLeq~i~~~--~~~it~ 236 (484)
T PRK14956 164 IPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSV---RDMLSFMEQAIVFT--DSKLTG 236 (484)
T ss_pred ccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChH---HHHHHHHHHHHHhC--CCCcCH
Confidence 34566788865432 12 222233345777777777666654 34776 88888888753221 112333
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhH
Q 047120 88 NAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFL 156 (634)
Q Consensus 88 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 156 (634)
..+.. +. |+ ++...+..++.++...+....+..+++++.+.|..|..++
T Consensus 237 ~~V~~-----------------~l--g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 237 VKIRK-----------------MI--GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred HHHHH-----------------Hh--CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 33322 21 32 2445556666666665556788889999999887765543
No 400
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=57.87 E-value=56 Score=26.50 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=29.8
Q ss_pred HHHHHHHHHhccC--CCCCchHHHHHHHHhcCCCchHHHHHHHH
Q 047120 535 VGEPVAKHLIGMD--SSNSSSYVLLSNMFAGLGMWNDARRVRSM 576 (634)
Q Consensus 535 ~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 576 (634)
.+..+|+.+...+ -..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6777777776544 55566777788888888888888887764
No 401
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=57.71 E-value=60 Score=25.44 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC
Q 047120 253 WNSMLHGCVKCGKMDDAQALFDKMPK 278 (634)
Q Consensus 253 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 278 (634)
|..++..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55666666666666666666665543
No 402
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=57.16 E-value=91 Score=25.96 Aligned_cols=83 Identities=16% Similarity=0.111 Sum_probs=64.9
Q ss_pred ccHHHHHHHHHcCCCcchHHHHHHHHHHCC-----CCCCcchHHHHHHHHhccCC-hHHHHHHHHHHHHhcCCCChhHHH
Q 047120 85 FLWNAIIKTYSHGLDPKEALVMFCLMLDNG-----VSVDKFSASLVLKACSRLGL-IEEGLQIHGLLRKVAFGSDLFLQN 158 (634)
Q Consensus 85 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~ 158 (634)
...|.++.-....+++...+.+++.+..-. -..+..+|+.++.+...... ---+..+|..+.+.+.++++.-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 346888888888899999888888874321 13466789999999976665 456778899998888899999999
Q ss_pred HHHHHHHhc
Q 047120 159 CLISLYVRC 167 (634)
Q Consensus 159 ~li~~~~~~ 167 (634)
.++.++.+-
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 999987654
No 403
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.96 E-value=79 Score=23.52 Aligned_cols=64 Identities=13% Similarity=0.111 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHH
Q 047120 369 AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434 (634)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 434 (634)
+++....+.|+ .+......+-.+-...|+.+.|.++++.+. ..+..|...+.++...|..+-|.
T Consensus 23 ~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 23 DVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 44455555552 222223333332335577888888888888 77788888888887777655543
No 404
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=56.80 E-value=3.1e+02 Score=30.38 Aligned_cols=88 Identities=11% Similarity=0.081 Sum_probs=47.2
Q ss_pred HHHcCCchHHHHHHHHHHhcCCCCCCH----h---HHHHHHH-HHHccCChHHHHHHHHHHHHc----CCCCchhHHHHH
Q 047120 322 YVRNGYSMKALEIFDNMQCELYLHPDD----A---SLVIVLS-AIAQLGHIDKGVAIHRYLEKD----QFSLNGKHGVAL 389 (634)
Q Consensus 322 ~~~~g~~~~A~~~~~~m~~~~~~~p~~----~---~~~~ll~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 389 (634)
.....++++|..+..+....- -.|+. . .+..+-. .....|+++.+..+.+..... -..+....+..+
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l-~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFL-KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHccChHHHHHHHHHHHHHh-CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 344566777777776665431 11111 1 2222211 123456777777766655542 223344555666
Q ss_pred HHHhHhcCCHHHHHHHHHhcc
Q 047120 390 IDMYSKCGSIENAIKVFEQIE 410 (634)
Q Consensus 390 ~~~~~~~~~~~~A~~~~~~~~ 410 (634)
..+..-.|++++|..+.....
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAE 524 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHH
Confidence 666667777777776665544
No 405
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=56.46 E-value=70 Score=32.13 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=57.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhcc---CC
Q 047120 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA---GH 500 (634)
Q Consensus 424 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~ 500 (634)
+...|++.+|+..|+.++.. ..+.......+.+++.+++...++ + +....+..-.+. ..
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~~----------i~l~vv~~~~E~~e~~eli~icrE-Y-------ilgl~iEl~Rr~l~~~~ 275 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILHS----------IPLLVVESREEEDEAKELIEICRE-Y-------ILGLSIELERRELPKDP 275 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHHH----------HHC--BSSCHHHHHHHHHHHHHHH-H-------HHHHHHHHHHCTS-TTT
T ss_pred HHhcCCHHHHHHHHHHHHHH----------hheeeecCHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHhccccc
Confidence 35678888888888876632 222222233345555555555444 1 111112222211 11
Q ss_pred HHHH---H---HHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047120 501 IEAA---R---NLIEDMPMEPNDV--IWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550 (634)
Q Consensus 501 ~~~A---~---~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (634)
.++. + .+|-..+++|... ++...+..+.+.+++..|-.+.+++++++|..
T Consensus 276 ~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 276 VEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred hhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 2222 2 2233335566543 66777788899999999999999999998754
No 406
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.43 E-value=3.4e+02 Score=31.20 Aligned_cols=119 Identities=13% Similarity=0.013 Sum_probs=63.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCc-ccC-hhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCH----HHHHHHHH
Q 047120 452 FTGLLNACAHAGLVKEGLLCFELMRRIHKL-EPE-LQHYGCMVDILGRAGHIEAARNLIEDMPMEPND----VIWRTLLS 525 (634)
Q Consensus 452 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~ 525 (634)
|..+++.+.+.+..+.+.++-..+.+..+. .|+ ..+++++.+-+...|.+-+|.+.+-. .||. .....++.
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~---npdserrrdcLRqlvi 1062 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR---NPDSERRRDCLRQLVI 1062 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc---CCcHHHHHHHHHHHHH
Confidence 555666666667777777666666552111 111 33466677777777777777666554 2332 23444444
Q ss_pred HHHhcCCh------------hHHHH-HHHHHhccCCCCCchHHHHHHH-HhcCCCchHHHHH
Q 047120 526 ACRNYENL------------NVGEP-VAKHLIGMDSSNSSSYVLLSNM-FAGLGMWNDARRV 573 (634)
Q Consensus 526 ~~~~~g~~------------~~a~~-~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~ 573 (634)
.++..|.. ++.+. +.+.+-+..|.....|+.|..+ +...++|.+|-.+
T Consensus 1063 vLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1063 VLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 44444433 33444 4444444455444444444444 4466777766554
No 407
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=56.24 E-value=90 Score=23.96 Aligned_cols=59 Identities=19% Similarity=0.252 Sum_probs=36.5
Q ss_pred HHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 047120 391 DMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITF 452 (634)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 452 (634)
..+...|++++|..+.+....||...|-+|.. .+.|-.+++..-+.+|...| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34556677777777777777777777765543 34566666666666666654 4444444
No 408
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.21 E-value=39 Score=29.87 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=20.0
Q ss_pred CcccChhHHHHHHHHHhccCCHHHHHHHHHhC
Q 047120 480 KLEPELQHYGCMVDILGRAGHIEAARNLIEDM 511 (634)
Q Consensus 480 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 511 (634)
...|+..+|..++..+...|+.++|.+..+++
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566666666666666666666666666655
No 409
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=56.09 E-value=1.7e+02 Score=28.26 Aligned_cols=29 Identities=17% Similarity=-0.101 Sum_probs=12.1
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHH
Q 047120 119 KFSASLVLKACSRLGLIEEGLQIHGLLRK 147 (634)
Q Consensus 119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 147 (634)
...-..++.+++...+.+...++++.+..
T Consensus 201 ~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 201 PEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 33344444444444444444444444444
No 410
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=55.87 E-value=20 Score=32.08 Aligned_cols=57 Identities=18% Similarity=0.334 Sum_probs=30.2
Q ss_pred HhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 047120 495 LGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551 (634)
Q Consensus 495 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (634)
..+.|+.+.|.+++.++ ...|+ ...|.-+...-.+.|+++.|.+.|++.++++|++-
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34455555555555554 22232 44555555555555666666666666666655543
No 411
>PRK12798 chemotaxis protein; Reviewed
Probab=55.39 E-value=2.3e+02 Score=28.38 Aligned_cols=180 Identities=13% Similarity=0.102 Sum_probs=105.0
Q ss_pred cCCHHHHHHHHHhccC----CChhHHHHHHHHH-HHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHH
Q 047120 396 CGSIENAIKVFEQIED----GSVDHWNAMINGL-AIHGLGELAFDLLMEMERLSIEPDD----ITFTGLLNACAHAGLVK 466 (634)
Q Consensus 396 ~~~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~ 466 (634)
.|+.+++.+.+..+.. +....|-.|+.+- ....+..+|+++|+...-. .|.. .....-+-.....|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 4777888888777763 2344566666553 4456788888888887653 4543 24455555667888888
Q ss_pred HHHHHHHHhHHhcCcccChhHH-HHHHHHHhcc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047120 467 EGLLCFELMRRIHKLEPELQHY-GCMVDILGRA---GHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKH 542 (634)
Q Consensus 467 ~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 542 (634)
++..+-..-...+...|-..-| ..+...+.+. -..+.-..++..|.-.--...|..+...-.-.|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 8777666555534434433222 2222233332 23444455555553222245777777777888999999999998
Q ss_pred HhccCCCCCchHHHHHHHHh-----cCCCchHHHHHHHHHH
Q 047120 543 LIGMDSSNSSSYVLLSNMFA-----GLGMWNDARRVRSMMK 578 (634)
Q Consensus 543 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~ 578 (634)
+..+... ...-...+.+|. -..+++++.+.+..+.
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 8887632 222222333332 2344666666665553
No 412
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=55.07 E-value=38 Score=28.09 Aligned_cols=63 Identities=17% Similarity=0.125 Sum_probs=44.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCC
Q 047120 501 IEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGM 566 (634)
Q Consensus 501 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 566 (634)
.+.|.++.+-|+ ...............|++..|.++.+.++..+|++...-...+++|.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 456777777775 223333445556778999999999999999999999988888888876653
No 413
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.67 E-value=1.9e+02 Score=27.17 Aligned_cols=121 Identities=15% Similarity=0.073 Sum_probs=61.5
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhH-------HHHHHHHHHccCChHHHHHHHHHHH----HcCCCCchhH
Q 047120 317 AMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS-------LVIVLSAIAQLGHIDKGVAIHRYLE----KDQFSLNGKH 385 (634)
Q Consensus 317 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~-------~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~ 385 (634)
.+.+-..+.+++++|+..+.++... |+..|..+ ...+...+...|+.....+...... +..-+-...+
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~k-g~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGK-GVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcC-CCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 3455566778888888888888876 66666543 3345556666666655444433222 2222223344
Q ss_pred HHHHHHHhHhc-CCHHHHHHHHHhccC----CCh-----hHHHHHHHHHHHcCChHHHHHHHH
Q 047120 386 GVALIDMYSKC-GSIENAIKVFEQIED----GSV-----DHWNAMINGLAIHGLGELAFDLLM 438 (634)
Q Consensus 386 ~~~l~~~~~~~-~~~~~A~~~~~~~~~----~~~-----~~~~~li~~~~~~~~~~~A~~~~~ 438 (634)
..+|++.+... ..++.-+.+.....+ ..- ..-.-++..+.+.|.+.+|+.+..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 44555544322 334444444443321 111 112234555566666666655433
No 414
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=54.09 E-value=93 Score=24.40 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047120 416 HWNAMINGLAIHGLGELAFDLLMEMER 442 (634)
Q Consensus 416 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 442 (634)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477788888888888888888887776
No 415
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=54.00 E-value=38 Score=25.67 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=19.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccC
Q 047120 522 TLLSACRNYENLNVGEPVAKHLIGMD 547 (634)
Q Consensus 522 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 547 (634)
.+.......|+.++|...+++++++-
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34445677888999998888888765
No 416
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=53.96 E-value=24 Score=31.61 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=45.8
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHH
Q 047120 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDV 518 (634)
Q Consensus 458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 518 (634)
...+.++.+.+.+++..+... .+-....|-.+...-.+.|+++.|.+.+++. .+.|+..
T Consensus 4 ~~~~~~D~~aaaely~qal~l--ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL--APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc--CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 456778999999999988762 2334677888888889999999999999887 6666543
No 417
>PRK09169 hypothetical protein; Validated
Probab=53.81 E-value=5.5e+02 Score=32.29 Aligned_cols=360 Identities=11% Similarity=0.038 Sum_probs=191.9
Q ss_pred ChhHHHHHHHHHHhcCCcHHHHHHH----HhhCCC-------CCchHHHHHHHHHHhcCChHHHHHHH----hhC-----
Q 047120 217 NLISWNSVLNGYAQLKSGLQFAWQI----FEKMPE-------RDLISWNSMLHGCVKCGKMDDAQALF----DKM----- 276 (634)
Q Consensus 217 ~~~~~~~ll~~~~~~~~~~~~a~~~----~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~----~~~----- 276 (634)
+......++++++|..+ -+.+... -..+.. -|.......++++++-.+-+...... .++
T Consensus 245 ~~q~va~~LNAlSKWp~-~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~ 323 (2316)
T PRK09169 245 RAQEVALLLNALSKWPD-DEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERG 323 (2316)
T ss_pred CHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChh
Confidence 34455666777776554 2222221 121111 34455555666666654433222111 111
Q ss_pred --CCCChhHHHHHHHHHHHcCChHHHHH----HhhhCC-------CCChhhHHHHHHHHHHcCCch----HHHHHHHHHH
Q 047120 277 --PKRDVVSWANMIDGYAKLGRVDIARR----LFDEMP-------KRDVVACNAMMGGYVRNGYSM----KALEIFDNMQ 339 (634)
Q Consensus 277 --~~~~~~~~~~l~~~~~~~g~~~~A~~----~~~~~~-------~~~~~~~~~l~~~~~~~g~~~----~A~~~~~~m~ 339 (634)
..-+..-....+++++|..+.+.+.. +-+.+. .-+..-....++++.+-++.+ .|..+...+.
T Consensus 324 l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~ 403 (2316)
T PRK09169 324 LLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLA 403 (2316)
T ss_pred hhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 12455666777888888777665332 222222 124455666777888776543 2334444443
Q ss_pred hcCCC--CCCHhHHHHHHHHHHccCChHHHHHHHHHH----HHc---CCCCchhHHHHHHHHhHhcCCHHH----HHHHH
Q 047120 340 CELYL--HPDDASLVIVLSAIAQLGHIDKGVAIHRYL----EKD---QFSLNGKHGVALIDMYSKCGSIEN----AIKVF 406 (634)
Q Consensus 340 ~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~---~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~ 406 (634)
...+. .-|..-....+.+|++-+.-+.+......+ ... .-..++.-....+.+++|-.+-+. +..+.
T Consensus 404 ~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA 483 (2316)
T PRK09169 404 RDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALA 483 (2316)
T ss_pred hchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 33222 245667788888998877666443332222 111 123456777778888887766442 23333
Q ss_pred Hhcc-------CCChhHHHHHHHHHHHcCChHHHHH----HHHHHHHC---CCCCCHHHHHHHHHHHhccCCHHHHH---
Q 047120 407 EQIE-------DGSVDHWNAMINGLAIHGLGELAFD----LLMEMERL---SIEPDDITFTGLLNACAHAGLVKEGL--- 469 (634)
Q Consensus 407 ~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~----~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~a~--- 469 (634)
..+. .-++.-....+.++.+-++.+.+.. +..++... --..+..-+...+.++++-.+.+.+.
T Consensus 484 ~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA 563 (2316)
T PRK09169 484 ARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAA 563 (2316)
T ss_pred HHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHH
Confidence 3332 1255567778888888777655433 22222221 12346677888889999877643322
Q ss_pred -HHHHHhHHhcC--cccChhHHHHHHHHHhccCCHHH----HHHHHHhC------CCCCCHHHHHHHHHHHHhcCChhHH
Q 047120 470 -LCFELMRRIHK--LEPELQHYGCMVDILGRAGHIEA----ARNLIEDM------PMEPNDVIWRTLLSACRNYENLNVG 536 (634)
Q Consensus 470 -~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~------~~~p~~~~~~~l~~~~~~~g~~~~a 536 (634)
.+...+....+ -..+.......++++.+-+.... |..+...+ ...-|..-+..+++++.+-.+.+..
T Consensus 564 ~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~c 643 (2316)
T PRK09169 564 EALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDC 643 (2316)
T ss_pred HHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhH
Confidence 23333222110 12345567778888888775432 33333333 1234566778888888887776655
Q ss_pred HHHHHHHhc--------cCCCCCchHHHHHHHHhcCCCchHHHHHHHHH
Q 047120 537 EPVAKHLIG--------MDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577 (634)
Q Consensus 537 ~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 577 (634)
......+.. ..--++..+.++.+++.+-.+.+.+.+....+
T Consensus 644 r~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aL 692 (2316)
T PRK09169 644 RQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAALAL 692 (2316)
T ss_pred HHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 444333322 11235667777778888877766544444444
No 418
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=53.76 E-value=2e+02 Score=28.79 Aligned_cols=51 Identities=18% Similarity=0.045 Sum_probs=23.3
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCCHHHHHHHHHHhHH
Q 047120 426 IHGLGELAFDLLMEMERLSIEPDDI--TFTGLLNACA--HAGLVKEGLLCFELMRR 477 (634)
Q Consensus 426 ~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~g~~~~a~~~~~~~~~ 477 (634)
..+++..|.++|+.+... +.++.. .+..+..+|. ..-++.+|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445555555555555554 333332 2333333332 23445555555555443
No 419
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=53.63 E-value=2.6e+02 Score=28.38 Aligned_cols=53 Identities=6% Similarity=-0.105 Sum_probs=22.6
Q ss_pred HHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHH
Q 047120 240 QIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYA 292 (634)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 292 (634)
.+.+.+..++.......+.++...+...-...+...+..++.......+.++.
T Consensus 90 ~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~ 142 (410)
T TIGR02270 90 SVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALG 142 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 33333333444444445555554444444433333333344444333334333
No 420
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=53.16 E-value=1.3e+02 Score=24.75 Aligned_cols=70 Identities=17% Similarity=0.172 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHHhcCcccC--hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCH
Q 047120 446 EPDDITFTGLLNACAHAG---LVKEGLLCFELMRRIHKLEPE--LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPND 517 (634)
Q Consensus 446 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 517 (634)
.++..+--.+..++.+.. +..+.+.+++.+.+. . .|+ .+..-.|.-++.|.|+++++.++++.. ..+||.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-A-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-c-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 455555555666666554 455566677776641 1 222 333344566677888888888877766 444543
No 421
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=52.76 E-value=1e+02 Score=23.64 Aligned_cols=76 Identities=16% Similarity=0.075 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCcc
Q 047120 135 IEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPI 213 (634)
Q Consensus 135 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 213 (634)
.++|..+-+.+...+-. ...+--.-+..+...|++++|..+.+....||...|-+|... +.|..+++..-+.++..
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 45555555555443311 222222334566778899999998888888888888776553 45555555555555544
No 422
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=52.46 E-value=2e+02 Score=26.90 Aligned_cols=160 Identities=13% Similarity=0.048 Sum_probs=0.0
Q ss_pred HhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHhccCCHH-HH
Q 047120 394 SKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL----SIEPDDITFTGLLNACAHAGLVK-EG 468 (634)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~~~~~~g~~~-~a 468 (634)
.+++++++|++++.. =...+.+.|+...|.++..-+.+. +..++......++..+...+.-+ +-
T Consensus 1 v~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r 69 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPER 69 (260)
T ss_dssp HHTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTH
T ss_pred CccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchH
Q ss_pred HHHHHHhHHhc----CcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047120 469 LLCFELMRRIH----KLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLI 544 (634)
Q Consensus 469 ~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 544 (634)
..+.+.+.+=. .-.-++.....+...|.+.|++.+|..-|-... .|+...+..++......|...+.--++-+++
T Consensus 70 ~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaV 148 (260)
T PF04190_consen 70 KKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGYPSEADLFIARAV 148 (260)
T ss_dssp HHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTSS--HHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcCCcchhHHHHHHH
Q ss_pred ccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 545 GMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 545 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
--|...|+...|...++...+
T Consensus 149 --------------L~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 149 --------------LQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp --------------HHHHHTTBHHHHHHHHHHHHH
T ss_pred --------------HHHHHhcCHHHHHHHHHHHHH
No 423
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=52.46 E-value=1.3e+02 Score=28.52 Aligned_cols=175 Identities=13% Similarity=0.110 Sum_probs=79.6
Q ss_pred HHHhCCCCchhhhhHHH-HHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCC
Q 047120 37 MITTGFIKNTHLTTKLV-ASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGV 115 (634)
Q Consensus 37 ~~~~~~~~~~~~~~~li-~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 115 (634)
+...|..|.+ +++.|. ..+.+.|-. +.-|.++|.... ....-|.+++.+.+.+.-++-+++ +
T Consensus 157 ~l~nGt~~~t-vl~~L~~d~LVkeGi~--l~F~~~lFk~~~------~Ek~i~~lis~Lrkg~md~rLmef--------f 219 (412)
T KOG2297|consen 157 LLSNGTLPAT-VLQSLLNDNLVKEGIA--LSFAVKLFKEWL------VEKDINDLISSLRKGKMDDRLMEF--------F 219 (412)
T ss_pred HHhCCCCCHH-HHHHHHHhhHHHHhHH--HHHHHHHHHHHH------hhccHHHHHHHHHhcChHhHHHHh--------c
Confidence 3344544433 333333 334555532 567788888764 334467788877554433333333 4
Q ss_pred CCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHh-hCCC---CCh----hH
Q 047120 116 SVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD-KMGI---RDS----VS 187 (634)
Q Consensus 116 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~---~~~----~~ 187 (634)
+|+..+-......+...|--+-..-.-.++. .| .-...-..|..-..+...+++.....+ +|+. |+. ..
T Consensus 220 Ppnkrs~E~Fak~Ft~agL~elvey~~~q~~-~~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~iv 296 (412)
T KOG2297|consen 220 PPNKRSVEHFAKYFTDAGLKELVEYHRNQQS-EG--ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIV 296 (412)
T ss_pred CCcchhHHHHHHHHhHhhHHHHHHHHHHHHH-HH--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeee
Confidence 6766665555555444432111111000000 00 001122223333334444555444433 3332 322 25
Q ss_pred HHHHHHHHHhCCChH-HHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHH
Q 047120 188 YNSMIDGYVKSGNIE-SARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAW 239 (634)
Q Consensus 188 ~~~li~~~~~~g~~~-~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~ 239 (634)
|..++++---+.+-+ -|.+.++.+ -+|.-++.+++..|. .+...
T Consensus 297 Ws~iMsaveWnKkeelva~qalrhl-------K~yaPLL~af~s~g~-sEL~L 341 (412)
T KOG2297|consen 297 WSGIMSAVEWNKKEELVAEQALRHL-------KQYAPLLAAFCSQGQ-SELEL 341 (412)
T ss_pred HhhhhHHHhhchHHHHHHHHHHHHH-------HhhhHHHHHHhcCCh-HHHHH
Confidence 777666543332211 133333333 246778888887777 55544
No 424
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=52.29 E-value=1.8e+02 Score=27.23 Aligned_cols=86 Identities=9% Similarity=0.018 Sum_probs=41.0
Q ss_pred HHHHHHcCCchHHHHHHHHHHhcC-CCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh--
Q 047120 319 MGGYVRNGYSMKALEIFDNMQCEL-YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK-- 395 (634)
Q Consensus 319 ~~~~~~~g~~~~A~~~~~~m~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 395 (634)
|.+++..++|.+++...-+.-+.. .++|. ....-|-.|.+.+....+.++-..-....-.-+..-|.++++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 567777777777766554443221 22222 2223333455666666655555544432222222335555444432
Q ss_pred ---cCCHHHHHHHH
Q 047120 396 ---CGSIENAIKVF 406 (634)
Q Consensus 396 ---~~~~~~A~~~~ 406 (634)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 35555555443
No 425
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=52.05 E-value=82 Score=33.71 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=14.2
Q ss_pred HHHHHhcCCCchHHHHHHHHH
Q 047120 557 LSNMFAGLGMWNDARRVRSMM 577 (634)
Q Consensus 557 l~~~~~~~g~~~~A~~~~~~~ 577 (634)
|..++.+.|..++-.++|+-.
T Consensus 350 Ln~LlgrKG~leklq~YWdV~ 370 (1226)
T KOG4279|consen 350 LNSLLGRKGALEKLQEYWDVA 370 (1226)
T ss_pred HHHHhhccchHHHHHHHHhHH
Confidence 445667777777777777654
No 426
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.78 E-value=47 Score=21.40 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=16.9
Q ss_pred ccCChHHHHHHHHHHHHhcCCCChhHHHHHH
Q 047120 131 RLGLIEEGLQIHGLLRKVAFGSDLFLQNCLI 161 (634)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 161 (634)
+.|-..++..+++.|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3445555555566665556555555555444
No 427
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=51.52 E-value=1e+02 Score=23.17 Aligned_cols=62 Identities=15% Similarity=0.034 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--CchHHHHHHHHhcCCCch-HHHHHHHHH
Q 047120 516 NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN--SSSYVLLSNMFAGLGMWN-DARRVRSMM 577 (634)
Q Consensus 516 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~-~A~~~~~~~ 577 (634)
|...-..+...+...|++++|.+.+-.+++.++.. ...-..++.++.-.|.-+ -+.++-++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 44566667777888888888888888888877543 456667777777666643 444444443
No 428
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=51.46 E-value=2e+02 Score=27.37 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=19.8
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 047120 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMG 181 (634)
Q Consensus 140 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 181 (634)
++++.+.+.++.|.-+.+.=+.-.+...=.+..++.+++.+-
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 345555555555554444333333344444555555555543
No 429
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=51.32 E-value=24 Score=23.34 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=24.1
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120 553 SYVLLSNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 553 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
..+.++.++.+.|++++|.++.+.+.+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 46778899999999999999999997653
No 430
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=51.23 E-value=2.2e+02 Score=26.93 Aligned_cols=58 Identities=16% Similarity=0.105 Sum_probs=35.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 047120 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELM 475 (634)
Q Consensus 417 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 475 (634)
++.....|...|.+.+|.++.++..... +.+...+-.++..+...|+--.+.+.++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4445566677777777777777766531 223445666666777777755555555544
No 431
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.89 E-value=2.7e+02 Score=27.78 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHhhhCCC------CChhhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 047120 283 SWANMIDGYAKLGRVDIARRLFDEMPK------RDVVACNAMMGGYVRNGYSMKALEIFDNMQC 340 (634)
Q Consensus 283 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 340 (634)
.+.-+.+.|..+|+++.|++.|.+..+ .-+..|-.+|..-.-.|+|.....+..+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 345677778888888888888877653 2344566677777777888777777766653
No 432
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=50.81 E-value=30 Score=25.62 Aligned_cols=54 Identities=24% Similarity=0.191 Sum_probs=34.1
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHH
Q 047120 278 KRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKA 331 (634)
Q Consensus 278 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 331 (634)
+.++.+....-...+...+.+++.++++.++.++..+|..+..++...|...-|
T Consensus 27 ~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 27 SRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred hcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 344444444444445556677777777777777777777777777776654443
No 433
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=50.59 E-value=25 Score=32.93 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=38.1
Q ss_pred HhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHH
Q 047120 495 LGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556 (634)
Q Consensus 495 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 556 (634)
..+.|+.++|..+|+.+ .+.|+ +....-+.......+++-+|..+|-+++...|.+..+...
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 34667777777777765 44554 3344444444445567777777777777777776654443
No 434
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=50.53 E-value=46 Score=19.88 Aligned_cols=18 Identities=6% Similarity=-0.134 Sum_probs=8.8
Q ss_pred HHHHHHHhcCChhHHHHH
Q 047120 522 TLLSACRNYENLNVGEPV 539 (634)
Q Consensus 522 ~l~~~~~~~g~~~~a~~~ 539 (634)
.+...+...|++++|+.+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 334444555555555555
No 435
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.96 E-value=2.7e+02 Score=27.68 Aligned_cols=60 Identities=18% Similarity=0.265 Sum_probs=42.2
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhccC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 047120 384 KHGVALIDMYSKCGSIENAIKVFEQIED------GSVDHWNAMINGLAIHGLGELAFDLLMEMERL 443 (634)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 443 (634)
..+.-+.+.|..+|+++.|++.|.+..+ .-+.+|-.+|..-.-.|+|.....+..+....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 4556677888888888888888887542 23345666666667777888777777776653
No 436
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=49.53 E-value=36 Score=23.41 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=12.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhC
Q 047120 488 YGCMVDILGRAGHIEAARNLIEDM 511 (634)
Q Consensus 488 ~~~l~~~~~~~g~~~~A~~~~~~~ 511 (634)
.-.++.+|...|++++|.++++++
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334555566666666666655543
No 437
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=49.00 E-value=62 Score=28.02 Aligned_cols=32 Identities=9% Similarity=0.294 Sum_probs=18.7
Q ss_pred HHHHHhcCChHHHHHHHhhCCC-CChhHHHHHH
Q 047120 257 LHGCVKCGKMDDAQALFDKMPK-RDVVSWANMI 288 (634)
Q Consensus 257 ~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~ 288 (634)
+-.|.+.|.+++|.+++++... ++.......+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL 150 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLRMKL 150 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHHHHH
Confidence 4567777777777777776543 3433333333
No 438
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=48.80 E-value=57 Score=30.30 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=51.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 522 TLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 522 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
.+=.++...++++.|.+..++.+.++|.+|.-+..-+.+|.+.|...-|++-++...+.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 34445788999999999999999999999999999999999999999999998886554
No 439
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.72 E-value=1.9e+02 Score=31.83 Aligned_cols=133 Identities=13% Similarity=0.139 Sum_probs=91.7
Q ss_pred HHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 047120 391 DMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLL 470 (634)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 470 (634)
.....+|+++.|++.-.++. +..+|..|+....+.|+.+-|...|++.+. |..|--.|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 34567899999988877664 556899999999999999999999987764 3333334667888888877
Q ss_pred HHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047120 471 CFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547 (634)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 547 (634)
+.+.+.. ..|... ....-.-.|+.++=.++++..+..|- .|.+ -..+|.-++|.++.++.-...
T Consensus 720 m~~iae~----r~D~~~---~~qnalYl~dv~ervkIl~n~g~~~l--aylt----a~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 720 MMKIAEI----RNDATG---QFQNALYLGDVKERVKILENGGQLPL--AYLT----AAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred HHHHHHh----hhhhHH---HHHHHHHhccHHHHHHHHHhcCcccH--HHHH----HhhcCcHHHHHHHHHhhcccc
Confidence 7766654 223322 11222346889999999998875442 2211 234688889999988887644
No 440
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=47.38 E-value=2.5e+02 Score=26.43 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=36.1
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCchhHH-------HHHHHHhHhcCCHHHHHHH
Q 047120 353 IVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG-------VALIDMYSKCGSIENAIKV 405 (634)
Q Consensus 353 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~A~~~ 405 (634)
.+.+-..+.+++++|+..+..+...|+..+..+. ..+.+.|...|+...-.++
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 3445567888999999999999998877665443 3455666666665544433
No 441
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.95 E-value=47 Score=21.41 Aligned_cols=34 Identities=9% Similarity=-0.000 Sum_probs=27.3
Q ss_pred HcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHH
Q 047120 95 SHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKA 128 (634)
Q Consensus 95 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 128 (634)
.+.|-.+++...+++|.+.|+..+...|..+++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 3667788888999999999988888888777653
No 442
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.62 E-value=4.7e+02 Score=29.44 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=22.9
Q ss_pred cHHHHHHHHHcCCCcchHHHHHHHHHH
Q 047120 86 LWNAIIKTYSHGLDPKEALVMFCLMLD 112 (634)
Q Consensus 86 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 112 (634)
-|..|+..|...|..++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 388888889899999999999888765
No 443
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=45.67 E-value=2.8e+02 Score=26.49 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=54.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHh----------ccCCHHH
Q 047120 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG----------RAGHIEA 503 (634)
Q Consensus 434 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~ 503 (634)
.++++.|...++.|.-..+..+.-.+.+.=.+.+.+.+|+.+.. |..-|..|+..|+ -.|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s------D~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS------DPQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc------ChhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 56888888889999988888777778888888999999998876 2233555555444 2577777
Q ss_pred HHHHHHhCC
Q 047120 504 ARNLIEDMP 512 (634)
Q Consensus 504 A~~~~~~~~ 512 (634)
-.++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 777777754
No 444
>PRK14700 recombination factor protein RarA; Provisional
Probab=45.60 E-value=2.8e+02 Score=26.49 Aligned_cols=138 Identities=8% Similarity=-0.024 Sum_probs=75.6
Q ss_pred CChhhHHHHHHhccCc-------hHHHHHHHHHHHh----C---CCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccc
Q 047120 12 NSTQSTLLLLRKCKTL-------NDVNQIHARMITT----G---FIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHA 77 (634)
Q Consensus 12 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~----~---~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~ 77 (634)
++...--+++|+|.-+ .++.++.++..+. | +..+..+.+.++.. ..||. +.|+..++....
T Consensus 19 P~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~--a~GDa---R~aLN~LE~a~~ 93 (300)
T PRK14700 19 PTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNY--NEGDC---RKILNLLERMFL 93 (300)
T ss_pred ccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHh--cCCHH---HHHHHHHHHHHh
Confidence 4566666788888654 3345666666642 2 33445555555554 35665 777777776431
Q ss_pred cCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHH-C--CCCCCcchHHHHHHHHh---ccCChHHHHHHHHHHHHhcCC
Q 047120 78 FREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLD-N--GVSVDKFSASLVLKACS---RLGLIEEGLQIHGLLRKVAFG 151 (634)
Q Consensus 78 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~--g~~p~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~g~~ 151 (634)
.... .+...--.+.+++..+ . ...-+...+--++.++. |..|.+.|+-.+.+|++.|-.
T Consensus 94 ~~~~---------------~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GED 158 (300)
T PRK14700 94 ISTR---------------GDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVD 158 (300)
T ss_pred hccc---------------cCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCC
Confidence 1000 0000011233333222 1 12223333444555554 566888888899999998877
Q ss_pred CChhHHHHHHHHHHhcCC
Q 047120 152 SDLFLQNCLISLYVRCGY 169 (634)
Q Consensus 152 ~~~~~~~~li~~~~~~g~ 169 (634)
|.......++-++-.-|.
T Consensus 159 p~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 159 PLVIARRMLCIASEDIGN 176 (300)
T ss_pred HHHHHHHHHHHHHhhccC
Confidence 766666666666666663
No 445
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=45.23 E-value=4.3e+02 Score=28.59 Aligned_cols=86 Identities=13% Similarity=0.171 Sum_probs=38.6
Q ss_pred HHHHhHhcCCHHHHHHHHHhc--cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc---c
Q 047120 389 LIDMYSKCGSIENAIKVFEQI--EDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLS-IEPDDITFTGLLNACAH---A 462 (634)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~---~ 462 (634)
...++.-+|.++.|.+++-+. ...+.+.+...+.-|.-.+-.+... ..+.... -.|...-+..++..|.+ .
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 345566789999999888772 2334444443333322211111111 2222110 01222556777777764 5
Q ss_pred CCHHHHHHHHHHhHH
Q 047120 463 GLVKEGLLCFELMRR 477 (634)
Q Consensus 463 g~~~~a~~~~~~~~~ 477 (634)
.+..+|.+++-.+..
T Consensus 341 td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 341 TDPREALQYLYLICL 355 (613)
T ss_dssp T-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHH
Confidence 688888888887765
No 446
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=45.03 E-value=79 Score=24.70 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=36.7
Q ss_pred CCCCChhhHHHHHHhccCchHHHHHHHHHHHhCCCCchhhhhHHHHHhhc
Q 047120 9 QPCNSTQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSS 58 (634)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 58 (634)
+....-..+...|++|.+-.++..|.+.|.+.| ..+....+-|-..+.+
T Consensus 59 ~~sGy~PtViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~ 107 (128)
T PF09868_consen 59 DFSGYNPTVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVK 107 (128)
T ss_pred CccCCCChHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344555678899999999999999999999999 5666555555554443
No 447
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.65 E-value=1.7e+02 Score=23.72 Aligned_cols=43 Identities=9% Similarity=0.068 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHH
Q 047120 432 LAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFEL 474 (634)
Q Consensus 432 ~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 474 (634)
.+.++|..|..+|+--. ..-|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55666666665555444 23445555555555666666655543
No 448
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=44.42 E-value=49 Score=22.77 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=10.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 047120 420 MINGLAIHGLGELAFDLLMEME 441 (634)
Q Consensus 420 li~~~~~~~~~~~A~~~~~~m~ 441 (634)
+|.+|.+.|++++|.+++.++.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 4455555555555555555443
No 449
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=44.28 E-value=1.1e+02 Score=25.45 Aligned_cols=62 Identities=15% Similarity=0.045 Sum_probs=35.6
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 047120 106 MFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCG 168 (634)
Q Consensus 106 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 168 (634)
+.+.+.+.|++++.. -..+++.+...++.-.|.++++.+.+.++..+..|.-.-++.+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344455666665543 34456666666666777777777777766555443333344444444
No 450
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=44.02 E-value=73 Score=23.07 Aligned_cols=38 Identities=18% Similarity=0.332 Sum_probs=28.8
Q ss_pred hhhHHHHHHhccCchHHHHHHHHHHHhCCCCchhhhhHH
Q 047120 14 TQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKL 52 (634)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 52 (634)
-.++...|++|....++..|.+.|.+.| ..+....+.|
T Consensus 34 ~PtV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~L 71 (98)
T COG4003 34 NPTVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKAL 71 (98)
T ss_pred CchHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3567888999999999999999999888 4555544444
No 451
>PF13934 ELYS: Nuclear pore complex assembly
Probab=43.00 E-value=2.6e+02 Score=25.48 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC--ChhHHHHHHHHHHhCCChHHHHHHHhhC
Q 047120 159 CLISLYVRCGYLEFARQLFDKMGIR--DSVSYNSMIDGYVKSGNIESARELFDSM 211 (634)
Q Consensus 159 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m 211 (634)
.++..+...|+.+.|..++..+..+ +...-..++.. ..++.+.+|..+-+..
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSY 166 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhC
Confidence 3455555556666666655554432 11122222222 4445555555554444
No 452
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.72 E-value=5.4e+02 Score=29.00 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhc
Q 047120 314 ACNAMMGGYVRNGYSMKALEIFDNMQCE 341 (634)
Q Consensus 314 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 341 (634)
-|..|+..|...|..++|+++|.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4778888888888888888888888753
No 453
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=42.54 E-value=1.8e+02 Score=23.33 Aligned_cols=61 Identities=7% Similarity=0.027 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHhccCCHHHHHHH-------HHhC-CCCCC-HHHHHHHH----HHHHhcCChhHHHHHHHHHhc
Q 047120 485 LQHYGCMVDILGRAGHIEAARNL-------IEDM-PMEPN-DVIWRTLL----SACRNYENLNVGEPVAKHLIG 545 (634)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~A~~~-------~~~~-~~~p~-~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~ 545 (634)
...+..|..++...|++++++.- |++- .+..| ...|-..+ .++...|+.++|...|+++-+
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 33456667777788887765543 3332 23333 44554433 346678899999888877654
No 454
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=41.38 E-value=53 Score=32.71 Aligned_cols=128 Identities=13% Similarity=0.055 Sum_probs=0.0
Q ss_pred hhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHH
Q 047120 48 LTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLK 127 (634)
Q Consensus 48 ~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 127 (634)
+...+++.+.+.++...+-+|.-+++......+. |...--.+++.|..-|-...|.++|..+.-+.++-|.-.|. ++.
T Consensus 182 a~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~-n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~-~~~ 259 (365)
T PF09797_consen 182 AAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPH-NYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHL-ILD 259 (365)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHH-HHH
Q ss_pred HHhccCChHHHH-HHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 047120 128 ACSRLGLIEEGL-QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFD 178 (634)
Q Consensus 128 ~~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 178 (634)
-+...|....+. ..++...+.=......+-..++.+| +.|.+.+..++.+
T Consensus 260 r~~~~~~~~~~~~~~~~~~~~fy~~~~~~~~e~i~~af-~~gsysKi~ef~~ 310 (365)
T PF09797_consen 260 RLSTLGPFKSAPENLLENALKFYDNSEKETPEFIIKAF-ENGSYSKIEEFIE 310 (365)
T ss_pred HHhccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCchhHHHHHH
No 455
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.36 E-value=83 Score=27.28 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=10.7
Q ss_pred HHHhcCChhHHHHHHHHHhc
Q 047120 526 ACRNYENLNVGEPVAKHLIG 545 (634)
Q Consensus 526 ~~~~~g~~~~a~~~~~~~~~ 545 (634)
.|.+.|.+++|.+++++..+
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 35555555555555555554
No 456
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=41.25 E-value=1.7e+02 Score=23.71 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=26.8
Q ss_pred HHHHHHHHhccC--CCCCchHHHHHHHHhcCCCchHHHHHHH
Q 047120 536 GEPVAKHLIGMD--SSNSSSYVLLSNMFAGLGMWNDARRVRS 575 (634)
Q Consensus 536 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 575 (634)
...+|+.+.+.+ ...+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666665544 4455567777777777888888777775
No 457
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=41.17 E-value=1.2e+02 Score=24.43 Aligned_cols=44 Identities=14% Similarity=0.286 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHH
Q 047120 512 PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555 (634)
Q Consensus 512 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (634)
.+-|++.....-+.+|.+-+|+..|.++++-....-++.-..|-
T Consensus 79 DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~ 122 (149)
T KOG4077|consen 79 DLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYP 122 (149)
T ss_pred ccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHH
Confidence 56788888888888898889999999888876544443333333
No 458
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.46 E-value=1.6e+02 Score=30.96 Aligned_cols=112 Identities=10% Similarity=-0.026 Sum_probs=60.8
Q ss_pred hHHHHHHhccCchHH----H----HHHHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccH
Q 047120 16 STLLLLRKCKTLNDV----N----QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLW 87 (634)
Q Consensus 16 ~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 87 (634)
....+.++|..++.- . .+...+.+.|+..+..+...+++.. .|+. ..|..++++....+
T Consensus 162 l~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s--~Gsl---R~al~lLdq~ia~~-------- 228 (509)
T PRK14958 162 LPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAA--NGSV---RDALSLLDQSIAYG-------- 228 (509)
T ss_pred chHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcH---HHHHHHHHHHHhcC--------
Confidence 334567777654321 2 2223344557777766666665553 4666 77777776543111
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChh
Q 047120 88 NAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLF 155 (634)
Q Consensus 88 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 155 (634)
.|... .+....|.. .++......++.++.. ++.+.+..+++.+.+.|..+...
T Consensus 229 ---------~~~It--~~~V~~~lg---~~~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~~i 281 (509)
T PRK14958 229 ---------NGKVL--IADVKTMLG---TIEPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFSNA 281 (509)
T ss_pred ---------CCCcC--HHHHHHHHC---CCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHH
Confidence 12211 122333332 2344445555665554 77888888888888888765543
No 459
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.46 E-value=52 Score=31.10 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=22.3
Q ss_pred CCcch-HHHHHHHHhccCChHHHHHHHHHHHHhcCCC
Q 047120 117 VDKFS-ASLVLKACSRLGLIEEGLQIHGLLRKVAFGS 152 (634)
Q Consensus 117 p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 152 (634)
||..+ |+..|+...+.||+++|+.+++++.+.|+.-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 44443 4566666666667777777777666666543
No 460
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=40.13 E-value=3.6e+02 Score=26.27 Aligned_cols=137 Identities=13% Similarity=0.108 Sum_probs=71.0
Q ss_pred HHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 047120 388 ALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF-DLLMEMERLSIEPDDITFTGLLNACAHAGLVK 466 (634)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 466 (634)
.+.+.+++.++-+.+..+-+.+..-......++..++-...=.+... .+++.+... ||......++++.+......
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~ 247 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASD 247 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchh
Confidence 45666666666666655555555444445555555554444333333 333444332 78888888888877766666
Q ss_pred HHHHHHHHhHHhcCcccChhHHHHHH-HHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047120 467 EGLLCFELMRRIHKLEPELQHYGCMV-DILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACR 528 (634)
Q Consensus 467 ~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 528 (634)
.....++.+... ....+.++...+. ++.....+.+....+++++...+|...|+.+..-+.
T Consensus 248 ~~~~~i~~~L~~-~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~qlfaDLv 309 (340)
T PF12069_consen 248 LVAILIDALLQS-PRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQLFADLV 309 (340)
T ss_pred HHHHHHHHHhcC-cccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 555545555541 2222333332222 222233455555556666543444455555444333
No 461
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.91 E-value=81 Score=24.01 Aligned_cols=27 Identities=15% Similarity=0.048 Sum_probs=12.4
Q ss_pred CCCchHHHHHHHHhcCCCchHHHHHHH
Q 047120 549 SNSSSYVLLSNMFAGLGMWNDARRVRS 575 (634)
Q Consensus 549 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 575 (634)
..|.....|+.+|.+.|+-+.|.+-|+
T Consensus 70 vpPG~HAhLGlLys~~G~~e~a~~eFe 96 (121)
T COG4259 70 VPPGYHAHLGLLYSNSGKDEQAVREFE 96 (121)
T ss_pred CCCcHHHHHHHHHhhcCChHHHHHHHH
Confidence 334444444444444444444444443
No 462
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=39.91 E-value=53 Score=33.07 Aligned_cols=104 Identities=17% Similarity=0.154 Sum_probs=71.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhcc
Q 047120 421 INGLAIHGLGELAFDLLMEMERLSIEPDDIT-FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRA 498 (634)
Q Consensus 421 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 498 (634)
+..+...+.++.|..++.+.++. .||... |..-..++.+.+++..|+.=+..+.+. .|+ ...|--=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 44566778899999999999984 887654 444457889999999998877777662 343 11122222333344
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 047120 499 GHIEAARNLIEDM-PMEPNDVIWRTLLSACRN 529 (634)
Q Consensus 499 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~ 529 (634)
+.+.+|...|+.. .+.|+..-..-.+.-|-.
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 5677777777776 678888877777766644
No 463
>PHA02875 ankyrin repeat protein; Provisional
Probab=39.84 E-value=4.1e+02 Score=26.82 Aligned_cols=232 Identities=13% Similarity=-0.005 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCchhh--hhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcc--cHHHHHHHHHcCCCcchHHHHH
Q 047120 32 QIHARMITTGFIKNTHL--TTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPF--LWNAIIKTYSHGLDPKEALVMF 107 (634)
Q Consensus 32 ~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~ 107 (634)
.+.+.+.+.|..|+... ..+.+...+..|+. ++.+.+.+.|..|+.. .....+...+..|+.+.+..++
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~-------~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDS-------EAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCH-------HHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Q ss_pred HHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHH--HHHHHHHhcCCHHHHHHHHhhCCCCCh
Q 047120 108 CLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQN--CLISLYVRCGYLEFARQLFDKMGIRDS 185 (634)
Q Consensus 108 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~ 185 (634)
+.-....-..+....+.+..++.... .++.+.+.+.|..|+..... +.+...+..|+.+-+..+++.-...+.
T Consensus 89 ~~~~~~~~~~~~~g~tpL~~A~~~~~-----~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~ 163 (413)
T PHA02875 89 DLGKFADDVFYKDGMTPLHLATILKK-----LDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDI 163 (413)
T ss_pred HcCCcccccccCCCCCHHHHHHHhCC-----HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC
Q ss_pred h--HHHHHHHHHHhCCChHHHHHHHhhCccC-CCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCch--------HHH
Q 047120 186 V--SYNSMIDGYVKSGNIESARELFDSMPIR-ERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLI--------SWN 254 (634)
Q Consensus 186 ~--~~~~li~~~~~~g~~~~A~~~~~~m~~~-~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~ 254 (634)
. .-.+-+...+..|+.+-+.-+++.-... ..+.......+......+. .+.+.-+++....++.. +..
T Consensus 164 ~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~-~~iv~~Ll~~gad~n~~~~~~~~~~t~l 242 (413)
T PHA02875 164 EDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNK-IDIVRLFIKRGADCNIMFMIEGEECTIL 242 (413)
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCC-HHHHHHHHHCCcCcchHhhcCCCchHHH
Q ss_pred HHHHHHHhcCChHHHHHHHhhC
Q 047120 255 SMLHGCVKCGKMDDAQALFDKM 276 (634)
Q Consensus 255 ~l~~~~~~~g~~~~A~~~~~~~ 276 (634)
.++..+......+....+...+
T Consensus 243 ~~~~~~~~~~~~~~~~~li~~i 264 (413)
T PHA02875 243 DMICNMCTNLESEAIDALIADI 264 (413)
T ss_pred HHHHhhcCCcccHHHHHHHHHH
No 464
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.82 E-value=59 Score=30.71 Aligned_cols=40 Identities=30% Similarity=0.287 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047120 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGL 455 (634)
Q Consensus 416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 455 (634)
-|+..|....+.||.++|+.++++..+.|+.--..+|...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4667888888888888888888888888866444555443
No 465
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=39.43 E-value=1.6e+02 Score=21.90 Aligned_cols=41 Identities=12% Similarity=0.032 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 047120 140 QIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKM 180 (634)
Q Consensus 140 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 180 (634)
++|+.....|+..|+.+|..++..+.-+=-.+...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 56666666666666666666666554444444455555444
No 466
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=38.77 E-value=1.9e+02 Score=28.99 Aligned_cols=57 Identities=12% Similarity=0.108 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHhhhCCC-----------CChhhHHHHHHHHHHcCCchHHHHHHHHHH
Q 047120 283 SWANMIDGYAKLGRVDIARRLFDEMPK-----------RDVVACNAMMGGYVRNGYSMKALEIFDNMQ 339 (634)
Q Consensus 283 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 339 (634)
+...|++.++-.|++..|+++++.+.- -.+.++..+.-+|.-.+++.+|++.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777776641 234566677777888888888888887765
No 467
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=38.33 E-value=3.3e+02 Score=28.51 Aligned_cols=111 Identities=16% Similarity=0.161 Sum_probs=59.9
Q ss_pred HHHHHHhccCchHH----H----HHHHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHH
Q 047120 17 TLLLLRKCKTLNDV----N----QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWN 88 (634)
Q Consensus 17 ~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 88 (634)
-...+|+|..++.- . .+-.-+.+.|+..+..++..+.++ ..|.. ++|+.+++++...+. +.+++.
T Consensus 163 p~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~--a~Gs~---RDalslLDq~i~~~~--~~It~~ 235 (515)
T COG2812 163 PNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARA--AEGSL---RDALSLLDQAIAFGE--GEITLE 235 (515)
T ss_pred chhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHH--cCCCh---hhHHHHHHHHHHccC--CcccHH
Confidence 34568888887542 2 333333444667776666666555 34555 778888887765432 344443
Q ss_pred HHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChh
Q 047120 89 AIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLF 155 (634)
Q Consensus 89 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 155 (634)
.+-. |. |..+ ......++.+. -.+|...+...++++.+.|..|...
T Consensus 236 ~v~~-----------------~l--G~~~-~~~~~~~~~~i-~~~d~~~~~~~~~~l~~~G~~~~~~ 281 (515)
T COG2812 236 SVRD-----------------ML--GLTD-IEKLLSLLEAI-LKGDAKEALRLINELIEEGKDPEAF 281 (515)
T ss_pred HHHH-----------------Hh--CCCC-HHHHHHHHHHH-HccCHHHHHHHHHHHHHhCcCHHHH
Confidence 3322 22 1211 11122222222 2467777888888888777665544
No 468
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=37.53 E-value=42 Score=27.28 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=13.1
Q ss_pred HHHHHHHHhccccCCCCCcccHHHHHHH
Q 047120 66 EFARYIFFKYHAFREKKDPFLWNAIIKT 93 (634)
Q Consensus 66 ~~A~~~~~~~~~~~~~~~~~~~~~li~~ 93 (634)
.+|..+|.+|...|-+||. |+.|+..
T Consensus 112 ~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 112 TDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred CcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3355555555555544444 5555543
No 469
>PRK13342 recombination factor protein RarA; Reviewed
Probab=37.14 E-value=4.6e+02 Score=26.61 Aligned_cols=35 Identities=6% Similarity=-0.127 Sum_probs=20.1
Q ss_pred cCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 047120 132 LGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVR 166 (634)
Q Consensus 132 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 166 (634)
.++.+.|...+..|++.|..|.......++.++-.
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 35677777777777777666554444444444333
No 470
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=36.26 E-value=3.3e+02 Score=24.70 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCccc---ChhHH--HHHHHHHhccCCHHHHHHHHHhC-C--CCCCH
Q 047120 446 EPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP---ELQHY--GCMVDILGRAGHIEAARNLIEDM-P--MEPND 517 (634)
Q Consensus 446 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~A~~~~~~~-~--~~p~~ 517 (634)
.+...-++.|+--|.-...+.+|...|..- .++.| |...+ ..-|......|+.++|++.+... + +.-|.
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e---~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKE---SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccc---cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 444555555555554444444444444322 23333 22222 23344556667777777666665 1 22232
Q ss_pred HHHHHHHHH----HHhcCChhHHHHHHHH
Q 047120 518 VIWRTLLSA----CRNYENLNVGEPVAKH 542 (634)
Q Consensus 518 ~~~~~l~~~----~~~~g~~~~a~~~~~~ 542 (634)
..+..|..- ..+.|..++|+++.+.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 222222211 3455666666666654
No 471
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=35.52 E-value=6.2e+02 Score=27.63 Aligned_cols=265 Identities=13% Similarity=0.050 Sum_probs=135.8
Q ss_pred HHHcCChHHHHHHhhhCCCCC---hhhH----HHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHH-HHHHHHHHccC
Q 047120 291 YAKLGRVDIARRLFDEMPKRD---VVAC----NAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASL-VIVLSAIAQLG 362 (634)
Q Consensus 291 ~~~~g~~~~A~~~~~~~~~~~---~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~~ 362 (634)
....|+..+|.+++.--...+ ...| ..+.-++...|..+.+.+++.+...... -+...+ ..|.-+++..|
T Consensus 367 vIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~--~e~v~hG~cLGlGLa~mG 444 (929)
T KOG2062|consen 367 VIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAE--NEVVRHGACLGLGLAGMG 444 (929)
T ss_pred eeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCccHHHHHHHHHHhcc--chhhhhhhhhhccchhcc
Confidence 345677788888876554221 1222 1223345566666668888877775522 122222 22222333333
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHH--HHHhHhcCC-HHHHHH-HHHhccC-CChhHHHH--HHHHHHHcCChHHHHH
Q 047120 363 HIDKGVAIHRYLEKDQFSLNGKHGVAL--IDMYSKCGS-IENAIK-VFEQIED-GSVDHWNA--MINGLAIHGLGELAFD 435 (634)
Q Consensus 363 ~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~-~~~A~~-~~~~~~~-~~~~~~~~--li~~~~~~~~~~~A~~ 435 (634)
. .-.++|+.+.+.-...+..+-.+- .-++.-.|. -.+|++ ++.-..+ ....+... +.-++..-|+-++|..
T Consensus 445 S--a~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~ 522 (929)
T KOG2062|consen 445 S--ANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADP 522 (929)
T ss_pred c--ccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHH
Confidence 2 223445554443222232222211 111111121 122222 2222221 11111111 2234555677778888
Q ss_pred HHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC--
Q 047120 436 LLMEMERLSIEPDDI--TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-- 511 (634)
Q Consensus 436 ~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 511 (634)
+.++|.... .|-.. -...+..+|+..|+.....+++.-... ....|+.-+..+.-++.-..+++....+.+-+
T Consensus 523 lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~dp~~~~s~V~lLse 599 (929)
T KOG2062|consen 523 LIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSE 599 (929)
T ss_pred HHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc--ccchHHHHHHHHHheeeEecChhhchHHHHHHhh
Confidence 999988653 33221 233456678888888888888777654 34456666777777778888888887777766
Q ss_pred CCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHhccCCCC---CchHHHHHHHHhcC
Q 047120 512 PMEPNDVI--WRTLLSACRNYENLNVGEPVAKHLIGMDSSN---SSSYVLLSNMFAGL 564 (634)
Q Consensus 512 ~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~ 564 (634)
...|-+.. -.+|.-+|.-.| ..+|..+++-+.+ +|.+ ..+...++.+..++
T Consensus 600 s~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~-D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 600 SYNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS-DPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred hcChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc-ChHHHHHHHHHHHHHHHHHhc
Confidence 23344332 223334455444 4778888888876 4433 22455555555544
No 472
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.49 E-value=3.5e+02 Score=24.75 Aligned_cols=145 Identities=15% Similarity=0.152 Sum_probs=70.7
Q ss_pred HHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 047120 389 LIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEG 468 (634)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 468 (634)
.+..|...-++.-|-...+++.+|=.. ...+--|.+..+.+--.++++-....++.-+...+..++ +...|+..+|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEPIQS--RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEPIQS--RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhhHHh--hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHH
Confidence 445555555555555544444433110 111222333333332333333344444444444444333 4456777777
Q ss_pred HHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047120 469 LLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548 (634)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 548 (634)
+.-++.....+|+.. +..+|+-. ..|.+.....++..|.+ +++++|.+.+.++++++=
T Consensus 212 lNnLQst~~g~g~Vn--------------------~enVfKv~-d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgy 269 (333)
T KOG0991|consen 212 LNNLQSTVNGFGLVN--------------------QENVFKVC-DEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGY 269 (333)
T ss_pred HHHHHHHhccccccc--------------------hhhhhhcc-CCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCC
Confidence 777666554222211 11122222 25777777777766654 678888888888887764
Q ss_pred CCCchHHHHHH
Q 047120 549 SNSSSYVLLSN 559 (634)
Q Consensus 549 ~~~~~~~~l~~ 559 (634)
...+....+..
T Consensus 270 sp~Dii~~~FR 280 (333)
T KOG0991|consen 270 SPEDIITTLFR 280 (333)
T ss_pred CHHHHHHHHHH
Confidence 33333333333
No 473
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=35.36 E-value=1.6e+02 Score=25.45 Aligned_cols=66 Identities=8% Similarity=-0.108 Sum_probs=34.3
Q ss_pred HHHHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcc
Q 047120 32 QIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPK 101 (634)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 101 (634)
.+.+.+.+.|+.++..-. .++..+...++. -.|.++++.+.+.++..+..|-...|..+...|-..
T Consensus 12 ~~~~~L~~~GlR~T~qR~-~IL~~l~~~~~h---lSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 12 QAEKLCAQRNVRLTPQRL-EVLRLMSLQPGA---ISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHHHHcCCCCCHHHH-HHHHHHHhcCCC---CCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 344445555665554433 333333333444 556666666665555555555555555555555443
No 474
>PRK12357 glutaminase; Reviewed
Probab=35.02 E-value=1.5e+02 Score=28.60 Aligned_cols=48 Identities=4% Similarity=-0.146 Sum_probs=31.6
Q ss_pred CChhhHHHHHHhccCchHH--HHHHHHHHHhCCCCchhhhhHHHHHhhcC-CCC
Q 047120 12 NSTQSTLLLLRKCKTLNDV--NQIHARMITTGFIKNTHLTTKLVASFSSS-PCT 62 (634)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~ 62 (634)
.+.+++.+.+..+--+.+. +.+|+ +.|.+|+-..+|++++.-... |.+
T Consensus 69 FsiQSisK~f~l~lal~~~G~~~V~~---~VG~EPSG~~FNSi~~Le~~~~g~P 119 (326)
T PRK12357 69 FTLQSISKVISFIAACLSRGISYVLE---RVDVEPTGDAFNSIIRLEIHKPGKP 119 (326)
T ss_pred EehHhHHHHHHHHHHHHHhCHHHHHH---HhCCCCCCCCcchhhhhhhcCCCCC
Confidence 4666777766665554332 55655 458999999999998765444 544
No 475
>PRK12356 glutaminase; Reviewed
Probab=34.96 E-value=1.2e+02 Score=29.20 Aligned_cols=48 Identities=10% Similarity=-0.015 Sum_probs=32.6
Q ss_pred CChhhHHHHHHhccCchH--HHHHHHHHHHhCCCCchhhhhHHHHHhhcCCCC
Q 047120 12 NSTQSTLLLLRKCKTLND--VNQIHARMITTGFIKNTHLTTKLVASFSSSPCT 62 (634)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 62 (634)
.+.+++.+.+..|--+.+ .+.+|+ +.|.+|+-..+|++++.-...|.+
T Consensus 65 FsiQSisK~f~l~lal~~~G~~~V~~---~VG~EPSG~~FNsi~~Le~~~g~P 114 (319)
T PRK12356 65 FAIESISKVFTLALALEDVGPQAVRE---KIGADPTGLPFNSVIAIELHGGKP 114 (319)
T ss_pred EehhhHHHHHHHHHHHHHhCHHHHHH---HhCCCCCCCCcchHHHhhccCCCC
Confidence 466677777666655432 245555 458899999999998776666655
No 476
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=34.92 E-value=3e+02 Score=24.96 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=10.3
Q ss_pred HHHHHccCChHHHHHHHHHHH
Q 047120 355 LSAIAQLGHIDKGVAIHRYLE 375 (634)
Q Consensus 355 l~~~~~~~~~~~a~~~~~~~~ 375 (634)
+......|+.+.|++....+.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhC
Confidence 333445555555555554443
No 477
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=34.88 E-value=7.6e+02 Score=28.43 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=18.8
Q ss_pred hHHHHHHHHhHhcC--CHHHHHHHHHhccCC
Q 047120 384 KHGVALIDMYSKCG--SIENAIKVFEQIEDG 412 (634)
Q Consensus 384 ~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~ 412 (634)
.....++.+|.+.+ ++++|+....++.+.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 44556667777776 677777777666544
No 478
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=34.49 E-value=4.1e+02 Score=25.17 Aligned_cols=25 Identities=4% Similarity=-0.039 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHH
Q 047120 450 ITFTGLLNACAHAGLVKEGLLCFEL 474 (634)
Q Consensus 450 ~~~~~ll~~~~~~g~~~~a~~~~~~ 474 (634)
..+..+..-|++.++.+.+.+...+
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3455555555555555555554444
No 479
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=34.38 E-value=4.6e+02 Score=29.08 Aligned_cols=55 Identities=11% Similarity=0.031 Sum_probs=33.1
Q ss_pred HHHHHHhccCchHH----HHHHHHHH----HhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhcc
Q 047120 17 TLLLLRKCKTLNDV----NQIHARMI----TTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH 76 (634)
Q Consensus 17 ~~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~ 76 (634)
.-.++++|..++.- .+|.+++. +.|+..+......+++.. .|+. ..|+.++++..
T Consensus 163 p~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A--~Gsm---RdALsLLdQAi 225 (830)
T PRK07003 163 PVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAA--QGSM---RDALSLTDQAI 225 (830)
T ss_pred cchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCH---HHHHHHHHHHH
Confidence 34678999776432 23333333 346666666666655553 5777 88888877644
No 480
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=34.13 E-value=1.4e+02 Score=27.80 Aligned_cols=17 Identities=18% Similarity=0.067 Sum_probs=7.1
Q ss_pred HhccCCHHHHHHHHHHh
Q 047120 459 CAHAGLVKEGLLCFELM 475 (634)
Q Consensus 459 ~~~~g~~~~a~~~~~~~ 475 (634)
|.+.|++++|.++|+.+
T Consensus 188 y~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 188 YFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 33444444444444433
No 481
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=34.10 E-value=4.8e+02 Score=25.91 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=16.9
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHHhc
Q 047120 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQI 409 (634)
Q Consensus 380 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 409 (634)
+-.+.++..+...+...|+.+.|.+++++.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRA 66 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERA 66 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334445555555666666666666665543
No 482
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.72 E-value=7.2e+02 Score=27.79 Aligned_cols=50 Identities=14% Similarity=0.066 Sum_probs=27.4
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhC
Q 047120 258 HGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEM 307 (634)
Q Consensus 258 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 307 (634)
..|...|++++|+++-+.-.+.-..++..-.+.|...+++..|-+++-++
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 35666777777776655431111122333345566666666666666665
No 483
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=33.45 E-value=63 Score=30.43 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=35.9
Q ss_pred HhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC
Q 047120 459 CAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN 516 (634)
Q Consensus 459 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 516 (634)
..+.|+.++|..+|+.+.+. .|+ +....-+........+.-+|-.++-++ .+.|.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlal---aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALAL---APTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HHhccchHHHHHHHHHHHhc---CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 35789999999999988763 333 344444444455556677777776665 55554
No 484
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=33.31 E-value=89 Score=23.50 Aligned_cols=47 Identities=17% Similarity=0.096 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCC
Q 047120 281 VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGY 327 (634)
Q Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 327 (634)
+.|-...-...+...+.+++.++++.++.+++.+|..+..++...+.
T Consensus 34 vlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 34 ILTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred CCCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 33333333333444566777777887777777777777777765554
No 485
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.18 E-value=3.2e+02 Score=25.18 Aligned_cols=67 Identities=12% Similarity=-0.001 Sum_probs=48.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCch
Q 047120 487 HYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS 553 (634)
Q Consensus 487 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 553 (634)
.+.....++...|++-++++--.++ ...| +...|.--..+....=+.++|.+-+.++++++|.-.++
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 3445556677788888888877776 3334 45677777777777778899999999999998864443
No 486
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=33.14 E-value=3.7e+02 Score=26.90 Aligned_cols=55 Identities=13% Similarity=-0.066 Sum_probs=39.4
Q ss_pred HHHcCCCcchHHHHHHHHHHCCCCCCcc--hHHHHHHHHh--ccCChHHHHHHHHHHHHh
Q 047120 93 TYSHGLDPKEALVMFCLMLDNGVSVDKF--SASLVLKACS--RLGLIEEGLQIHGLLRKV 148 (634)
Q Consensus 93 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 148 (634)
.+.+.+++..|.++|+.+.++ ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344778999999999999887 556555 3444445544 456788899888887664
No 487
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.14 E-value=4e+02 Score=28.37 Aligned_cols=86 Identities=14% Similarity=0.079 Sum_probs=57.0
Q ss_pred HhccCCHHHHHHHHHhC-C-CCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCC
Q 047120 495 LGRAGHIEAARNLIEDM-P-MEPN------DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGM 566 (634)
Q Consensus 495 ~~~~g~~~~A~~~~~~~-~-~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 566 (634)
..+..++..+.+.|..- . +.-| ......+.-.|....+++.|.++++++-+.+|.++-.-.....+....|.
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 34555666666666542 1 1111 22445555556677788888888888888888877777777777778888
Q ss_pred chHHHHHHHHHHhC
Q 047120 567 WNDARRVRSMMKER 580 (634)
Q Consensus 567 ~~~A~~~~~~~~~~ 580 (634)
.++|...+......
T Consensus 444 Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 444 SEEALTCLQKIKSS 457 (872)
T ss_pred hHHHHHHHHHHHhh
Confidence 88888887776554
No 488
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=33.05 E-value=3.4e+02 Score=23.92 Aligned_cols=19 Identities=21% Similarity=0.421 Sum_probs=14.3
Q ss_pred HhcCCCchHHHHHHHHHHh
Q 047120 561 FAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 561 ~~~~g~~~~A~~~~~~~~~ 579 (634)
..+.|++++|.++++-|.+
T Consensus 131 ~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 131 LLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3466888888888887755
No 489
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.80 E-value=1.1e+02 Score=29.27 Aligned_cols=52 Identities=12% Similarity=0.184 Sum_probs=31.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCcc
Q 047120 160 LISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPI 213 (634)
Q Consensus 160 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 213 (634)
++..+.+.+++....+.++.+. ....-...+..+...|++..|++++.+...
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4445555555555555555442 233344556777788888888888877654
No 490
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=32.72 E-value=4.4e+02 Score=24.99 Aligned_cols=79 Identities=9% Similarity=-0.077 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----C--CHHHHHHHHHHhHHhcCcccChhHHHHHHHHHh----c
Q 047120 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHA-----G--LVKEGLLCFELMRRIHKLEPELQHYGCMVDILG----R 497 (634)
Q Consensus 429 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 497 (634)
+..+|...+++..+.|..+...+...+...+... - +...|...+..+.. .+ +......+...|. -
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~-~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAE-LG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHH-hc---CHHHHHHHHHHHHcCCCC
Confidence 5566666666666665443322222222222221 1 22356666666655 22 2333333444442 2
Q ss_pred cCCHHHHHHHHHhC
Q 047120 498 AGHIEAARNLIEDM 511 (634)
Q Consensus 498 ~g~~~~A~~~~~~~ 511 (634)
..+.++|...|++.
T Consensus 204 ~~d~~~A~~wy~~A 217 (292)
T COG0790 204 PRDLKKAFRWYKKA 217 (292)
T ss_pred CcCHHHHHHHHHHH
Confidence 33666777777666
No 491
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=32.44 E-value=2.7e+02 Score=28.02 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=42.4
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcc--C---------CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047120 387 VALIDMYSKCGSIENAIKVFEQIE--D---------GSVDHWNAMINGLAIHGLGELAFDLLMEME 441 (634)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~--~---------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 441 (634)
..|++.++-.|++..|+++++.+. + -.+.++.-+.-+|...+++.+|.+.|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888899999998887765 1 134567778888889999999999888764
No 492
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.08 E-value=2.4e+02 Score=30.38 Aligned_cols=110 Identities=15% Similarity=0.087 Sum_probs=59.4
Q ss_pred hHHHHHHhccCchH----HHHHHHH----HHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccH
Q 047120 16 STLLLLRKCKTLND----VNQIHAR----MITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLW 87 (634)
Q Consensus 16 ~~~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 87 (634)
.+..++++|..++. ...+..+ +.+.|+..+..+...+++. ..|+. ..|..++++....+
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~--s~Gsl---R~al~lLdq~ia~~-------- 233 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSM---RDALSLTDQAIAFG-------- 233 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCH---HHHHHHHHHHHHhc--------
Confidence 34467888866532 1233333 3445777777777777764 34666 77777766543211
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC
Q 047120 88 NAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSD 153 (634)
Q Consensus 88 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 153 (634)
.+. --.+.+++|.. .++......++.++.. |+...++.+++++.+.|..+.
T Consensus 234 ---------~~~--It~~~V~~~Lg---~~~~~~i~~LldaL~~-~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 234 ---------SGQ--LQEAAVRQMLG---SVDRSHVFRLIDALAQ-GDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred ---------CCC--cCHHHHHHHHc---CCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 111 11233333432 1334444455555554 567777777777777765543
No 493
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=32.08 E-value=90 Score=18.95 Aligned_cols=28 Identities=18% Similarity=0.075 Sum_probs=21.7
Q ss_pred chHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 552 SSYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
.+|..|+.+-...+++++|.+=|++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4677888888888888888888777654
No 494
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=31.78 E-value=4.9e+02 Score=25.31 Aligned_cols=118 Identities=8% Similarity=0.025 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh------ccCCHHHHHHHHHHhHHhcCcccChhH-HHHHHHHHhccCCHH
Q 047120 430 GELAFDLLMEMERLSIEPDDITFTGLLNACA------HAGLVKEGLLCFELMRRIHKLEPELQH-YGCMVDILGRAGHIE 502 (634)
Q Consensus 430 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~------~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~ 502 (634)
.+++..++++....+. |.+...-..|.++- ..-+|.....+|+.+.. +.|++.+ .|- .-+..+.--.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNR-AVAla~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNR-AVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehH-HHHHHHhhhHH
Confidence 5778888888887764 88887777776653 23468888888887765 2455333 332 23344555567
Q ss_pred HHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 047120 503 AARNLIEDMPMEP----NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552 (634)
Q Consensus 503 ~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 552 (634)
.++.+++.++-.| ....+..-...+.+.|+.++|...|++++.+.++.+.
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 7777777663332 2223344445578899999999999999888766544
No 495
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=31.13 E-value=2.6e+02 Score=21.91 Aligned_cols=79 Identities=13% Similarity=0.128 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047120 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMER 442 (634)
Q Consensus 363 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 442 (634)
..++|..|.+.+...+. ....+--.-+..+...|++++|+..=.....||...|-+|. -.+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 44566666666655442 12222222334455666666664333333345555554443 3355666666666665554
Q ss_pred CC
Q 047120 443 LS 444 (634)
Q Consensus 443 ~g 444 (634)
.|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 43
No 496
>PRK13342 recombination factor protein RarA; Reviewed
Probab=29.79 E-value=6.1e+02 Score=25.76 Aligned_cols=43 Identities=19% Similarity=0.067 Sum_probs=28.1
Q ss_pred HHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047120 417 WNAMINGLAI---HGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459 (634)
Q Consensus 417 ~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 459 (634)
...+++++.+ .++.+.|+..+.+|.+.|..|....-..+..++
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4444555544 478899999999999888777655444444343
No 497
>PF13934 ELYS: Nuclear pore complex assembly
Probab=29.74 E-value=4.4e+02 Score=24.07 Aligned_cols=94 Identities=11% Similarity=0.118 Sum_probs=48.2
Q ss_pred hcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhC
Q 047120 166 RCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM 245 (634)
Q Consensus 166 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 245 (634)
..++++.|.+.+-.-... ..-..-++.++...|+...|+.+++.+.....+......++.. ...+. +.+|...-+..
T Consensus 90 D~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~-v~EAf~~~R~~ 166 (226)
T PF13934_consen 90 DHGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGL-VTEAFSFQRSY 166 (226)
T ss_pred ChHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCC-HHHHHHHHHhC
Confidence 445566666655332111 0111236666666777777777777765432222223333333 33345 77777766666
Q ss_pred CCCC-chHHHHHHHHHHh
Q 047120 246 PERD-LISWNSMLHGCVK 262 (634)
Q Consensus 246 ~~~~-~~~~~~l~~~~~~ 262 (634)
.+.. ...+..++..+..
T Consensus 167 ~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 167 PDELRRRLFEQLLEHCLE 184 (226)
T ss_pred chhhhHHHHHHHHHHHHH
Confidence 5532 3455555555553
No 498
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=29.71 E-value=3.5e+02 Score=28.86 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=13.1
Q ss_pred HHHHHHHhcCChHHHHHHHhhCC
Q 047120 255 SMLHGCVKCGKMDDAQALFDKMP 277 (634)
Q Consensus 255 ~l~~~~~~~g~~~~A~~~~~~~~ 277 (634)
+|+.+|...|++-.+.++++...
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~ 55 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFI 55 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh
Confidence 45555666666655555555544
No 499
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=29.67 E-value=1.3e+02 Score=23.70 Aligned_cols=44 Identities=14% Similarity=0.106 Sum_probs=24.1
Q ss_pred HHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccC
Q 047120 90 IIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLG 133 (634)
Q Consensus 90 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 133 (634)
++..+...+.+-.|.++++.+.+.+..++..|--..|+.+...|
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 44444444555566666666666555555555444555555444
No 500
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=29.24 E-value=2.3e+02 Score=20.62 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=7.2
Q ss_pred CChhHHHHHHHHHHhcC
Q 047120 152 SDLFLQNCLISLYVRCG 168 (634)
Q Consensus 152 ~~~~~~~~li~~~~~~g 168 (634)
+|+.+-...+.++.+.|
T Consensus 43 ~~~~vr~~a~~aL~~i~ 59 (88)
T PF13646_consen 43 EDPMVRRAAARALGRIG 59 (88)
T ss_dssp SSHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 34444444444444443
Done!