Query 047120
Match_columns 634
No_of_seqs 603 out of 4220
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 13:32:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047120.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047120hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.3E-41 4.4E-46 364.0 35.5 489 56-562 63-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3E-38 1E-42 337.9 38.0 475 94-581 63-580 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.3E-26 4.5E-31 233.3 36.6 365 193-566 7-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 99.9 6.7E-25 2.3E-29 220.8 36.6 348 225-581 6-369 (388)
5 4g26_A Pentatricopeptide repea 99.9 2.9E-26 9.8E-31 234.4 23.9 184 313-498 27-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 3.5E-27 1.2E-31 241.1 16.6 198 30-230 9-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 4.3E-23 1.5E-27 216.0 28.7 422 154-582 6-480 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.2E-22 4.1E-27 212.6 30.2 446 84-558 6-490 (514)
9 3fp2_A TPR repeat-containing p 99.9 2.9E-22 1E-26 210.9 30.9 425 119-553 25-498 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 1E-21 3.4E-26 201.9 33.4 323 249-580 25-410 (450)
11 3fp2_A TPR repeat-containing p 99.9 7.4E-22 2.5E-26 207.8 32.2 426 83-517 24-495 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 1.3E-20 4.5E-25 193.5 31.3 359 184-569 25-443 (450)
13 1xi4_A Clathrin heavy chain; a 99.9 1.5E-16 5.3E-21 172.0 52.2 482 34-574 862-1378(1630)
14 3ieg_A DNAJ homolog subfamily 99.9 6.4E-19 2.2E-23 174.8 31.0 307 250-562 3-351 (359)
15 3ieg_A DNAJ homolog subfamily 99.8 1.2E-18 4.1E-23 172.9 30.8 296 280-582 2-337 (359)
16 1xi4_A Clathrin heavy chain; a 99.8 6.9E-16 2.4E-20 166.9 48.3 417 118-575 984-1440(1630)
17 3hym_B Cell division cycle pro 99.8 9.4E-18 3.2E-22 164.3 29.2 285 279-568 20-322 (330)
18 1fch_A Peroxisomal targeting s 99.8 3.9E-18 1.3E-22 169.9 23.2 279 292-577 36-356 (368)
19 3hym_B Cell division cycle pro 99.8 2E-17 6.7E-22 162.0 27.6 266 310-581 20-300 (330)
20 2xm6_A Protein corresponding t 99.8 2.3E-16 8E-21 163.4 35.3 375 139-563 27-452 (490)
21 1b89_A Protein (clathrin heavy 99.8 1.8E-17 6.1E-22 161.2 23.8 237 58-325 15-254 (449)
22 2ooe_A Cleavage stimulation fa 99.8 1.2E-15 3.9E-20 159.8 37.2 413 142-581 2-493 (530)
23 2xm6_A Protein corresponding t 99.8 1.2E-15 4.1E-20 158.0 36.9 318 249-582 74-434 (490)
24 2ooe_A Cleavage stimulation fa 99.8 8.9E-16 3E-20 160.7 35.5 415 107-549 2-495 (530)
25 4eqf_A PEX5-related protein; a 99.8 2E-17 6.7E-22 164.7 20.7 261 311-576 64-352 (365)
26 1fch_A Peroxisomal targeting s 99.8 4.6E-17 1.6E-21 162.1 21.3 277 295-581 15-315 (368)
27 1b89_A Protein (clathrin heavy 99.8 1.2E-16 4.2E-21 155.3 23.0 349 166-583 15-388 (449)
28 3mkr_A Coatomer subunit epsilo 99.8 5.9E-16 2E-20 147.7 27.2 267 291-572 9-286 (291)
29 3mkr_A Coatomer subunit epsilo 99.7 2.3E-16 7.8E-21 150.5 23.3 248 319-582 6-266 (291)
30 4g1t_A Interferon-induced prot 99.7 5.8E-16 2E-20 159.9 27.6 369 184-591 50-470 (472)
31 3cv0_A Peroxisome targeting si 99.7 1.1E-16 3.8E-21 156.4 20.6 259 313-577 22-312 (327)
32 4eqf_A PEX5-related protein; a 99.7 2.6E-16 8.8E-21 156.5 22.3 232 347-581 64-311 (365)
33 4g1t_A Interferon-induced prot 99.7 9.7E-15 3.3E-19 150.7 28.0 342 186-558 95-471 (472)
34 3spa_A Mtrpol, DNA-directed RN 99.7 2.1E-17 7.3E-22 173.2 5.3 154 43-199 124-286 (1134)
35 3cv0_A Peroxisome targeting si 99.7 6.5E-15 2.2E-19 143.8 22.5 267 253-547 24-316 (327)
36 3uq3_A Heat shock protein STI1 99.7 1E-14 3.6E-19 136.9 22.4 218 351-581 8-237 (258)
37 2pl2_A Hypothetical conserved 99.7 4.7E-15 1.6E-19 135.1 18.6 194 380-578 2-212 (217)
38 3uq3_A Heat shock protein STI1 99.6 1.9E-14 6.7E-19 135.0 19.4 236 313-560 6-256 (258)
39 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.1E-14 1.1E-18 135.1 21.0 242 324-574 17-269 (275)
40 3u4t_A TPR repeat-containing p 99.6 4.2E-14 1.4E-18 134.0 19.6 245 314-565 5-269 (272)
41 3spa_A Mtrpol, DNA-directed RN 99.6 3.7E-15 1.2E-19 156.6 13.0 114 415-529 128-248 (1134)
42 1ouv_A Conserved hypothetical 99.6 6.5E-13 2.2E-17 125.8 26.7 218 353-582 11-253 (273)
43 1ouv_A Conserved hypothetical 99.6 1.5E-12 5E-17 123.4 26.9 226 311-551 5-256 (273)
44 2ho1_A Type 4 fimbrial biogene 99.5 3.7E-13 1.3E-17 125.8 20.6 195 384-580 38-238 (252)
45 3e4b_A ALGK; tetratricopeptide 99.5 4.7E-13 1.6E-17 136.3 22.8 345 191-548 9-389 (452)
46 2ho1_A Type 4 fimbrial biogene 99.5 1.2E-12 4.2E-17 122.2 23.8 206 312-556 37-248 (252)
47 3e4b_A ALGK; tetratricopeptide 99.5 2E-13 6.9E-18 139.0 19.8 343 224-583 9-390 (452)
48 2q7f_A YRRB protein; TPR, prot 99.5 1.4E-13 4.9E-18 127.8 17.1 174 385-561 59-237 (243)
49 2h6f_A Protein farnesyltransfe 99.5 4.8E-13 1.6E-17 131.9 21.5 243 312-563 97-365 (382)
50 2vq2_A PILW, putative fimbrial 99.5 5.6E-13 1.9E-17 122.0 20.7 196 383-580 8-211 (225)
51 4a1s_A PINS, partner of inscut 99.5 6.9E-14 2.4E-18 141.4 15.8 264 315-581 51-373 (411)
52 2q7f_A YRRB protein; TPR, prot 99.5 1.8E-13 6E-18 127.2 16.5 199 381-582 21-224 (243)
53 3sf4_A G-protein-signaling mod 99.5 1.2E-13 4E-18 139.3 16.1 269 282-550 10-340 (406)
54 2pl2_A Hypothetical conserved 99.5 1.2E-12 4.2E-17 119.0 21.0 192 311-510 4-210 (217)
55 3u4t_A TPR repeat-containing p 99.5 9.9E-13 3.4E-17 124.5 21.2 228 350-582 5-252 (272)
56 3ro2_A PINS homolog, G-protein 99.5 1.4E-13 4.7E-18 134.7 15.1 264 315-581 8-333 (338)
57 2vq2_A PILW, putative fimbrial 99.5 2.8E-12 9.6E-17 117.3 23.0 205 350-557 10-222 (225)
58 3vtx_A MAMA; tetratricopeptide 99.5 1.1E-12 3.7E-17 116.0 18.6 166 413-582 4-172 (184)
59 2h6f_A Protein farnesyltransfe 99.5 1.1E-12 3.7E-17 129.4 19.6 228 349-582 98-350 (382)
60 1xnf_A Lipoprotein NLPI; TPR, 99.5 9.7E-13 3.3E-17 124.7 17.2 218 359-582 16-246 (275)
61 4abn_A Tetratricopeptide repea 99.5 4.2E-13 1.4E-17 137.6 15.1 208 365-577 85-318 (474)
62 3sf4_A G-protein-signaling mod 99.5 5.4E-13 1.9E-17 134.4 15.4 260 315-577 12-333 (406)
63 4e6h_A MRNA 3'-END-processing 99.4 4.9E-10 1.7E-14 117.9 36.7 219 329-552 326-576 (679)
64 3ulq_A Response regulator aspa 99.4 3.7E-12 1.3E-16 127.3 16.9 223 356-579 111-367 (383)
65 3nf1_A KLC 1, kinesin light ch 99.4 6.7E-13 2.3E-17 128.3 11.1 236 313-579 28-306 (311)
66 4a1s_A PINS, partner of inscut 99.4 2.5E-12 8.6E-17 129.9 15.3 262 287-548 54-374 (411)
67 3vtx_A MAMA; tetratricopeptide 99.4 1.2E-11 3.9E-16 109.3 17.1 166 382-551 4-175 (184)
68 3ulq_A Response regulator aspa 99.4 1.6E-11 5.4E-16 122.7 19.9 230 318-547 109-369 (383)
69 4gyw_A UDP-N-acetylglucosamine 99.4 6E-12 2E-16 134.1 17.3 162 413-579 8-173 (723)
70 3ro2_A PINS homolog, G-protein 99.4 8.2E-12 2.8E-16 121.9 16.6 134 416-549 185-335 (338)
71 2ond_A Cleavage stimulation fa 99.4 2.8E-10 9.7E-15 109.6 26.8 220 329-553 33-277 (308)
72 1hz4_A MALT regulatory protein 99.3 5.9E-10 2E-14 110.7 27.7 261 319-580 21-322 (373)
73 3as5_A MAMA; tetratricopeptide 99.3 3.5E-11 1.2E-15 106.1 16.2 161 417-580 11-173 (186)
74 4e6h_A MRNA 3'-END-processing 99.3 5.1E-09 1.7E-13 110.2 34.8 215 365-581 326-571 (679)
75 4i17_A Hypothetical protein; T 99.3 1E-10 3.5E-15 107.3 19.5 205 346-562 5-225 (228)
76 2ond_A Cleavage stimulation fa 99.3 1.6E-10 5.4E-15 111.4 21.7 213 365-582 33-272 (308)
77 3q15_A PSP28, response regulat 99.3 1.1E-10 3.6E-15 116.3 20.4 222 357-579 110-364 (378)
78 3q15_A PSP28, response regulat 99.3 6.8E-10 2.3E-14 110.4 25.8 229 316-546 105-365 (378)
79 3nf1_A KLC 1, kinesin light ch 99.3 1.2E-11 4E-16 119.5 11.5 239 280-549 26-310 (311)
80 4i17_A Hypothetical protein; T 99.3 7E-11 2.4E-15 108.3 16.0 191 381-582 5-211 (228)
81 3as5_A MAMA; tetratricopeptide 99.3 2.6E-10 9.1E-15 100.4 17.8 168 384-554 9-181 (186)
82 4abn_A Tetratricopeptide repea 99.2 6.7E-11 2.3E-15 121.2 15.3 179 398-581 83-288 (474)
83 1hz4_A MALT regulatory protein 99.2 1.7E-09 5.8E-14 107.4 23.4 260 289-548 22-324 (373)
84 1qqe_A Vesicular transport pro 99.2 1.7E-10 5.8E-15 110.1 14.6 186 392-577 46-266 (292)
85 3edt_B KLC 2, kinesin light ch 99.2 3E-10 1E-14 107.7 14.5 222 359-580 12-281 (283)
86 4gyw_A UDP-N-acetylglucosamine 99.1 4.5E-10 1.5E-14 119.7 16.1 162 382-548 8-176 (723)
87 1qqe_A Vesicular transport pro 99.1 2.4E-09 8.1E-14 102.1 17.1 201 357-557 46-280 (292)
88 2yhc_A BAMD, UPF0169 lipoprote 99.1 3.4E-09 1.2E-13 96.7 16.9 181 383-583 4-216 (225)
89 3qky_A Outer membrane assembly 99.1 2E-09 6.8E-14 100.9 15.4 184 383-568 15-249 (261)
90 3rjv_A Putative SEL1 repeat pr 99.1 9.9E-09 3.4E-13 92.5 19.4 173 402-583 5-200 (212)
91 3mv2_B Coatomer subunit epsilo 99.1 2.1E-08 7.2E-13 93.5 21.2 238 292-552 24-288 (310)
92 4ga2_A E3 SUMO-protein ligase 99.1 2.1E-10 7.2E-15 97.1 7.0 141 422-566 5-149 (150)
93 3qky_A Outer membrane assembly 99.1 2.3E-09 7.7E-14 100.5 14.8 169 411-581 12-225 (261)
94 2fo7_A Synthetic consensus TPR 99.0 2.7E-09 9.1E-14 88.1 13.3 127 452-580 4-132 (136)
95 3edt_B KLC 2, kinesin light ch 99.0 1.7E-09 5.8E-14 102.4 13.6 225 323-547 12-282 (283)
96 3qou_A Protein YBBN; thioredox 99.0 6.9E-09 2.4E-13 98.5 16.0 175 399-578 102-282 (287)
97 3mv2_B Coatomer subunit epsilo 99.0 5.5E-08 1.9E-12 90.7 21.4 159 417-580 103-282 (310)
98 2pzi_A Probable serine/threoni 99.0 1.5E-09 5.3E-14 116.3 12.4 168 359-532 402-583 (681)
99 2fo7_A Synthetic consensus TPR 99.0 1.7E-08 5.9E-13 83.1 15.1 131 416-549 3-135 (136)
100 4ga2_A E3 SUMO-protein ligase 98.9 1E-09 3.5E-14 92.8 6.8 123 455-580 3-129 (150)
101 2r5s_A Uncharacterized protein 98.9 6.7E-09 2.3E-13 90.6 11.7 155 420-579 12-172 (176)
102 3gyz_A Chaperone protein IPGC; 98.9 6.3E-09 2.2E-13 87.4 9.7 100 482-581 32-134 (151)
103 3urz_A Uncharacterized protein 98.9 3.2E-08 1.1E-12 88.8 14.6 129 418-550 58-190 (208)
104 2ifu_A Gamma-SNAP; membrane fu 98.9 6.7E-08 2.3E-12 92.7 17.7 220 324-572 3-253 (307)
105 2vsy_A XCC0866; transferase, g 98.9 1.8E-08 6.2E-13 106.1 14.8 159 396-558 2-169 (568)
106 2pzi_A Probable serine/threoni 98.9 9.1E-08 3.1E-12 102.5 20.1 182 323-511 402-602 (681)
107 4gco_A Protein STI-1; structur 98.9 1.6E-08 5.6E-13 82.3 10.7 114 445-560 8-124 (126)
108 2qfc_A PLCR protein; TPR, HTH, 98.8 7.9E-08 2.7E-12 91.6 16.8 164 416-579 77-265 (293)
109 4gco_A Protein STI-1; structur 98.8 1.3E-08 4.4E-13 82.9 9.5 101 481-581 8-111 (126)
110 3u3w_A Transcriptional activat 98.8 3.5E-07 1.2E-11 87.1 20.9 161 419-579 80-265 (293)
111 1hh8_A P67PHOX, NCF-2, neutrop 98.8 6.4E-08 2.2E-12 87.3 14.9 127 416-548 8-152 (213)
112 2vsy_A XCC0866; transferase, g 98.8 5.9E-08 2E-12 102.2 16.4 146 361-511 2-154 (568)
113 2uy1_A Cleavage stimulation fa 98.8 6.1E-07 2.1E-11 91.7 23.0 366 131-545 6-412 (493)
114 2yhc_A BAMD, UPF0169 lipoprote 98.8 8.4E-08 2.9E-12 87.4 14.6 185 348-553 4-220 (225)
115 3rjv_A Putative SEL1 repeat pr 98.8 2.4E-07 8.1E-12 83.4 17.1 174 367-548 5-199 (212)
116 2vgx_A Chaperone SYCD; alterna 98.8 1.5E-08 5.1E-13 85.2 8.1 96 485-580 21-118 (148)
117 2r5s_A Uncharacterized protein 98.8 8.9E-08 3.1E-12 83.3 13.3 156 385-545 8-172 (176)
118 3urz_A Uncharacterized protein 98.8 3.3E-07 1.1E-11 82.2 17.0 185 314-525 6-198 (208)
119 3dra_A Protein farnesyltransfe 98.8 1.8E-06 6E-11 81.5 22.6 217 327-579 48-286 (306)
120 1a17_A Serine/threonine protei 98.7 1.1E-07 3.6E-12 81.8 12.2 127 451-579 15-145 (166)
121 3dra_A Protein farnesyltransfe 98.7 3.4E-06 1.2E-10 79.5 23.2 232 292-561 44-303 (306)
122 2ifu_A Gamma-SNAP; membrane fu 98.7 6E-08 2.1E-12 93.1 11.0 197 360-578 3-222 (307)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.7 7.6E-07 2.6E-11 80.1 17.4 131 386-517 9-154 (213)
124 1na0_A Designed protein CTPR3; 98.7 2E-07 6.7E-12 75.4 11.8 115 449-565 9-125 (125)
125 4f3v_A ESX-1 secretion system 98.7 2.8E-07 9.6E-12 84.8 13.9 183 395-582 18-239 (282)
126 2xcb_A PCRH, regulatory protei 98.7 8.6E-08 2.9E-12 80.0 9.8 96 485-580 18-115 (142)
127 3qou_A Protein YBBN; thioredox 98.7 1E-06 3.4E-11 83.5 18.4 82 461-544 197-282 (287)
128 2vyi_A SGTA protein; chaperone 98.7 1.6E-07 5.4E-12 76.8 11.1 118 449-568 12-131 (131)
129 2lni_A Stress-induced-phosphop 98.7 1.6E-07 5.4E-12 77.1 11.1 116 449-566 16-133 (133)
130 2c2l_A CHIP, carboxy terminus 98.7 8.2E-08 2.8E-12 90.7 10.1 191 382-580 3-199 (281)
131 3upv_A Heat shock protein STI1 98.6 1.2E-07 4.1E-12 77.2 9.6 96 486-581 5-102 (126)
132 1p5q_A FKBP52, FK506-binding p 98.6 1.8E-07 6E-12 90.9 12.4 94 485-578 196-292 (336)
133 2uy1_A Cleavage stimulation fa 98.6 1.4E-06 4.9E-11 88.9 19.1 349 198-579 7-412 (493)
134 2e2e_A Formate-dependent nitri 98.6 6.7E-08 2.3E-12 84.2 7.9 119 461-581 22-145 (177)
135 2kck_A TPR repeat; tetratricop 98.6 2.3E-07 7.8E-12 73.4 10.2 99 484-582 5-108 (112)
136 4f3v_A ESX-1 secretion system 98.6 9E-07 3.1E-11 81.4 14.9 138 417-559 105-249 (282)
137 3u3w_A Transcriptional activat 98.6 7.5E-06 2.6E-10 77.8 21.8 159 389-547 81-267 (293)
138 3gyz_A Chaperone protein IPGC; 98.6 2.4E-07 8.1E-12 77.7 9.2 105 445-551 31-138 (151)
139 1hxi_A PEX5, peroxisome target 98.6 1.6E-07 5.4E-12 75.7 7.8 95 487-581 19-115 (121)
140 3gw4_A Uncharacterized protein 98.5 1.1E-06 3.9E-11 78.1 14.1 152 427-579 5-175 (203)
141 3sz7_A HSC70 cochaperone (SGT) 98.5 2.8E-07 9.6E-12 79.0 9.6 110 449-560 11-122 (164)
142 3q49_B STIP1 homology and U bo 98.5 4.5E-07 1.6E-11 74.9 10.5 97 484-580 8-106 (137)
143 2qfc_A PLCR protein; TPR, HTH, 98.5 1.6E-06 5.6E-11 82.4 15.4 161 386-546 78-266 (293)
144 2vgx_A Chaperone SYCD; alterna 98.5 1.8E-07 6.1E-12 78.6 7.3 116 437-556 10-128 (148)
145 1elw_A TPR1-domain of HOP; HOP 98.5 1.2E-06 4.2E-11 69.8 11.8 110 450-561 5-116 (118)
146 2lni_A Stress-induced-phosphop 98.5 6.4E-07 2.2E-11 73.4 10.3 99 483-581 14-114 (133)
147 4gcn_A Protein STI-1; structur 98.5 3.7E-07 1.3E-11 74.3 8.6 96 485-580 8-112 (127)
148 3gw4_A Uncharacterized protein 98.5 8.8E-07 3E-11 78.9 11.5 153 395-547 4-177 (203)
149 1elw_A TPR1-domain of HOP; HOP 98.5 7.5E-07 2.5E-11 71.1 10.0 98 485-582 4-103 (118)
150 2fbn_A 70 kDa peptidylprolyl i 98.5 6.4E-07 2.2E-11 79.5 10.1 95 486-580 89-186 (198)
151 1na0_A Designed protein CTPR3; 98.5 7.8E-07 2.7E-11 71.8 9.8 97 485-581 9-107 (125)
152 2dba_A Smooth muscle cell asso 98.5 1E-06 3.6E-11 73.7 10.8 110 449-561 28-143 (148)
153 2hr2_A Hypothetical protein; a 98.4 4.2E-07 1.4E-11 75.3 7.6 63 518-580 58-131 (159)
154 2xcb_A PCRH, regulatory protei 98.4 6.2E-07 2.1E-11 74.7 8.7 109 450-560 19-129 (142)
155 2e2e_A Formate-dependent nitri 98.4 1.2E-06 4E-11 76.2 10.8 128 425-555 21-153 (177)
156 3upv_A Heat shock protein STI1 98.4 1.2E-06 4.2E-11 71.1 10.1 111 450-562 5-123 (126)
157 2dba_A Smooth muscle cell asso 98.4 2.9E-06 9.9E-11 70.9 12.5 97 484-580 27-128 (148)
158 3sz7_A HSC70 cochaperone (SGT) 98.4 1.8E-06 6.2E-11 73.9 11.2 92 416-511 13-105 (164)
159 2vyi_A SGTA protein; chaperone 98.4 1.1E-06 3.7E-11 71.6 9.3 99 483-581 10-110 (131)
160 3q7a_A Farnesyltransferase alp 98.4 0.00024 8.3E-09 67.6 25.2 174 320-500 62-257 (349)
161 2xev_A YBGF; tetratricopeptide 98.4 9.4E-07 3.2E-11 72.0 7.6 88 492-579 9-104 (129)
162 1a17_A Serine/threonine protei 98.3 7.7E-06 2.6E-10 69.8 13.8 127 416-545 15-145 (166)
163 3q7a_A Farnesyltransferase alp 98.3 7E-05 2.4E-09 71.3 21.2 216 359-579 65-330 (349)
164 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 3.9E-06 1.3E-10 85.1 13.0 94 485-578 317-413 (457)
165 3k9i_A BH0479 protein; putativ 98.3 3.6E-07 1.2E-11 73.2 4.1 60 519-578 29-88 (117)
166 3dss_A Geranylgeranyl transfer 98.3 0.00012 4.2E-09 69.3 21.6 232 323-561 40-319 (331)
167 4b4t_Q 26S proteasome regulato 98.3 8.7E-06 3E-10 82.3 14.7 162 417-578 58-243 (434)
168 3q49_B STIP1 homology and U bo 98.3 3.1E-06 1E-10 69.8 9.3 100 448-549 8-109 (137)
169 3rkv_A Putative peptidylprolyl 98.3 1.7E-06 5.8E-11 73.9 7.9 110 450-580 12-126 (162)
170 3ro3_A PINS homolog, G-protein 98.3 1.8E-06 6.2E-11 73.4 8.1 129 451-579 11-157 (164)
171 1elr_A TPR2A-domain of HOP; HO 98.3 1.9E-06 6.4E-11 70.2 7.5 108 452-562 7-123 (131)
172 1elr_A TPR2A-domain of HOP; HO 98.3 2.1E-06 7E-11 70.0 7.7 97 485-581 4-109 (131)
173 2if4_A ATFKBP42; FKBP-like, al 98.2 2.6E-06 8.8E-11 82.7 9.2 147 415-581 180-329 (338)
174 2xev_A YBGF; tetratricopeptide 98.2 9.1E-06 3.1E-10 66.0 11.3 104 454-560 7-119 (129)
175 2kck_A TPR repeat; tetratricop 98.2 7.2E-06 2.4E-10 64.5 10.3 100 450-551 7-111 (112)
176 2c2l_A CHIP, carboxy terminus 98.2 5E-06 1.7E-10 78.3 10.8 113 448-562 3-117 (281)
177 4gcn_A Protein STI-1; structur 98.2 2.9E-06 9.8E-11 68.9 8.0 95 452-548 11-114 (127)
178 1wao_1 Serine/threonine protei 98.2 1.8E-06 6.1E-11 88.1 8.0 116 458-575 15-134 (477)
179 1ihg_A Cyclophilin 40; ppiase 98.2 5.4E-06 1.8E-10 81.3 11.1 90 484-573 272-363 (370)
180 2fbn_A 70 kDa peptidylprolyl i 98.2 8E-07 2.7E-11 78.9 4.6 97 485-581 38-152 (198)
181 2hr2_A Hypothetical protein; a 98.2 4E-06 1.4E-10 69.4 8.2 109 452-560 14-145 (159)
182 1hxi_A PEX5, peroxisome target 98.2 6.2E-06 2.1E-10 66.2 8.8 98 452-551 20-119 (121)
183 1p5q_A FKBP52, FK506-binding p 98.2 1.6E-05 5.5E-10 77.0 12.9 128 414-545 147-293 (336)
184 3k9i_A BH0479 protein; putativ 98.2 1.6E-06 5.6E-11 69.2 4.8 93 462-555 3-99 (117)
185 4b4t_Q 26S proteasome regulato 98.1 6.4E-05 2.2E-09 75.8 17.4 95 416-510 137-241 (434)
186 3rkv_A Putative peptidylprolyl 98.1 5.1E-06 1.7E-10 70.9 7.4 123 414-561 11-142 (162)
187 3dss_A Geranylgeranyl transfer 98.1 0.00044 1.5E-08 65.5 21.3 219 360-582 41-306 (331)
188 2l6j_A TPR repeat-containing p 98.1 9.1E-07 3.1E-11 69.8 2.4 93 484-576 3-103 (111)
189 3ro3_A PINS homolog, G-protein 98.1 9.4E-06 3.2E-10 68.8 9.0 131 417-547 12-159 (164)
190 1wao_1 Serine/threonine protei 98.1 2.6E-05 9E-10 79.4 12.8 113 425-541 17-134 (477)
191 3n71_A Histone lysine methyltr 98.1 2.8E-05 9.6E-10 78.6 12.5 124 459-582 319-466 (490)
192 3ma5_A Tetratricopeptide repea 98.1 1.4E-05 4.6E-10 61.6 8.0 66 515-580 5-70 (100)
193 1dce_A Protein (RAB geranylger 98.0 0.00016 5.6E-09 74.9 18.2 167 399-569 45-244 (567)
194 2if4_A ATFKBP42; FKBP-like, al 98.0 1.7E-05 5.9E-10 76.8 8.8 153 383-552 179-334 (338)
195 1na3_A Designed protein CTPR2; 98.0 1.9E-05 6.5E-10 59.3 7.3 81 485-565 9-91 (91)
196 2kat_A Uncharacterized protein 97.9 3.4E-05 1.1E-09 61.2 8.1 77 504-580 4-82 (115)
197 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 2.2E-05 7.5E-10 79.6 8.1 66 517-582 317-382 (457)
198 1ihg_A Cyclophilin 40; ppiase 97.9 2.8E-05 9.6E-10 76.2 8.5 113 450-581 224-337 (370)
199 1zu2_A Mitochondrial import re 97.9 6.9E-06 2.4E-10 67.8 3.1 85 498-582 15-122 (158)
200 1klx_A Cysteine rich protein B 97.8 0.00017 5.9E-09 59.2 11.3 111 464-582 10-128 (138)
201 3bee_A Putative YFRE protein; 97.8 0.00011 3.8E-09 55.2 8.2 70 514-583 3-75 (93)
202 2l6j_A TPR repeat-containing p 97.7 8.8E-05 3E-09 58.0 7.6 68 515-582 2-69 (111)
203 3n71_A Histone lysine methyltr 97.7 6.7E-05 2.3E-09 75.9 8.1 109 493-619 317-443 (490)
204 3qww_A SET and MYND domain-con 97.7 5.6E-05 1.9E-09 75.1 7.3 105 497-619 310-432 (433)
205 1zu2_A Mitochondrial import re 97.6 4.5E-05 1.5E-09 63.0 4.4 88 463-552 16-126 (158)
206 1klx_A Cysteine rich protein B 97.6 0.00072 2.4E-08 55.4 11.6 112 428-548 9-128 (138)
207 1na3_A Designed protein CTPR2; 97.5 0.0002 6.9E-09 53.5 7.0 65 517-581 9-73 (91)
208 1dce_A Protein (RAB geranylger 97.5 0.00094 3.2E-08 69.3 14.1 153 426-582 40-223 (567)
209 3qwp_A SET and MYND domain-con 97.5 0.00027 9.1E-09 70.4 8.9 109 493-619 295-421 (429)
210 2kat_A Uncharacterized protein 97.4 0.00035 1.2E-08 55.1 6.8 80 468-549 4-85 (115)
211 3ly7_A Transcriptional activat 97.3 0.0061 2.1E-07 58.0 15.3 138 412-551 192-344 (372)
212 2kc7_A BFR218_protein; tetratr 97.1 0.0013 4.6E-08 49.9 7.5 65 491-555 6-73 (99)
213 2kc7_A BFR218_protein; tetratr 97.1 0.00065 2.2E-08 51.7 5.6 60 523-582 6-66 (99)
214 3lvg_A Clathrin heavy chain 1; 97.1 9.1E-05 3.1E-09 71.6 0.8 230 45-301 53-324 (624)
215 3qww_A SET and MYND domain-con 97.1 0.0018 6.3E-08 64.2 10.0 93 462-554 311-424 (433)
216 3ma5_A Tetratricopeptide repea 97.1 0.0023 7.7E-08 48.8 8.1 63 413-477 6-69 (100)
217 1wy6_A Hypothetical protein ST 97.0 0.012 4.2E-07 45.8 11.5 141 424-583 17-157 (172)
218 3qwp_A SET and MYND domain-con 97.0 0.0039 1.3E-07 62.0 11.4 98 458-555 296-414 (429)
219 3u64_A Protein TP_0956; tetrat 97.0 0.0021 7.3E-08 58.4 8.4 87 501-587 179-276 (301)
220 3mkq_A Coatomer beta'-subunit; 96.7 0.19 6.6E-06 54.8 22.7 127 254-406 633-759 (814)
221 3lvg_A Clathrin heavy chain 1; 96.6 0.00016 5.6E-09 69.9 -1.9 241 153-404 53-325 (624)
222 3ly7_A Transcriptional activat 96.6 0.0098 3.4E-07 56.6 10.0 133 446-582 191-341 (372)
223 1pc2_A Mitochondria fission pr 96.6 0.0038 1.3E-07 50.9 6.1 90 463-554 12-108 (152)
224 3bee_A Putative YFRE protein; 96.6 0.01 3.5E-07 44.3 8.0 70 482-551 3-77 (93)
225 3mkq_A Coatomer beta'-subunit; 96.5 0.084 2.9E-06 57.7 18.4 44 395-440 664-707 (814)
226 2v5f_A Prolyl 4-hydroxylase su 96.4 0.014 4.7E-07 44.8 8.4 71 488-558 8-87 (104)
227 1pc2_A Mitochondria fission pr 96.2 0.016 5.4E-07 47.3 7.8 77 432-511 16-97 (152)
228 2v5f_A Prolyl 4-hydroxylase su 96.2 0.013 4.5E-07 44.9 7.0 68 515-582 3-77 (104)
229 3mkq_B Coatomer subunit alpha; 95.8 0.37 1.3E-05 40.3 14.5 128 392-543 14-141 (177)
230 1qsa_A Protein (soluble lytic 95.8 2.2 7.6E-05 44.1 30.9 114 428-545 228-347 (618)
231 3mkq_B Coatomer subunit alpha; 95.6 0.87 3E-05 38.0 16.0 102 290-409 14-115 (177)
232 3u64_A Protein TP_0956; tetrat 95.0 0.033 1.1E-06 50.7 5.7 82 465-549 179-272 (301)
233 1nzn_A CGI-135 protein, fissio 94.9 0.22 7.5E-06 38.9 9.6 90 465-556 17-113 (126)
234 4gns_B Protein CSD3, chitin bi 94.3 0.13 4.5E-06 54.3 9.3 55 524-578 344-398 (754)
235 4h7y_A Dual specificity protei 94.1 0.21 7.1E-06 40.1 7.8 52 531-582 74-125 (161)
236 1nzn_A CGI-135 protein, fissio 93.9 0.11 3.7E-06 40.7 5.8 68 514-581 32-104 (126)
237 3ltm_A Alpha-REP4; protein eng 93.5 3.4 0.00012 35.8 21.1 18 279-296 124-141 (211)
238 1wy6_A Hypothetical protein ST 93.3 2.4 8.2E-05 33.3 14.8 137 393-548 17-156 (172)
239 1y8m_A FIS1; mitochondria, unk 93.1 0.63 2.2E-05 37.0 8.9 71 482-552 36-112 (144)
240 3ltj_A Alpharep-4; protein eng 93.0 4 0.00014 35.0 20.6 17 347-363 151-167 (201)
241 1qsa_A Protein (soluble lytic 92.0 13 0.00043 38.5 33.7 263 157-441 75-346 (618)
242 4ady_A RPN2, 26S proteasome re 91.9 16 0.00056 39.5 29.9 150 424-580 500-658 (963)
243 4b4t_P 26S proteasome regulato 91.6 11 0.00038 37.2 18.3 246 325-582 29-308 (445)
244 4h7y_A Dual specificity protei 91.3 4.6 0.00016 32.5 11.8 96 310-408 11-119 (161)
245 3ltj_A Alpharep-4; protein eng 91.2 6.5 0.00022 33.7 19.6 108 248-360 88-195 (201)
246 2wpv_A GET4, UPF0363 protein Y 91.0 9.7 0.00033 35.3 19.3 169 385-579 35-216 (312)
247 2wpv_A GET4, UPF0363 protein Y 91.0 9.7 0.00033 35.3 20.1 183 257-477 20-216 (312)
248 3lpz_A GET4 (YOR164C homolog); 91.0 10 0.00035 35.4 22.5 169 385-579 37-215 (336)
249 3ltm_A Alpha-REP4; protein eng 90.5 8 0.00027 33.4 18.7 80 216-296 93-172 (211)
250 3o48_A Mitochondria fission 1 90.4 0.39 1.3E-05 37.7 5.0 71 483-553 38-114 (134)
251 3txn_A 26S proteasome regulato 89.2 16 0.00056 35.1 16.8 162 349-510 20-206 (394)
252 4ady_A RPN2, 26S proteasome re 88.9 29 0.00099 37.6 32.6 249 290-544 383-656 (963)
253 2ff4_A Probable regulatory pro 88.6 0.82 2.8E-05 44.5 7.1 53 525-577 179-231 (388)
254 1v54_E Cytochrome C oxidase po 88.4 3.2 0.00011 30.6 8.0 63 429-493 25-87 (109)
255 3lpz_A GET4 (YOR164C homolog); 88.2 17 0.00057 34.0 22.1 183 257-477 19-215 (336)
256 3ffl_A Anaphase-promoting comp 87.9 8.7 0.0003 31.5 11.4 28 383-410 122-149 (167)
257 3ffl_A Anaphase-promoting comp 87.6 2.3 7.8E-05 34.9 7.8 54 388-441 25-90 (167)
258 4gns_B Protein CSD3, chitin bi 87.4 2.9 9.8E-05 44.2 10.5 30 553-582 615-644 (754)
259 4fhn_B Nucleoporin NUP120; pro 87.3 14 0.00049 41.7 17.0 163 286-467 817-989 (1139)
260 4fhn_B Nucleoporin NUP120; pro 85.1 3.9 0.00013 46.3 11.0 65 518-582 900-969 (1139)
261 2y69_E Cytochrome C oxidase su 84.7 3.8 0.00013 32.0 7.2 59 103-162 72-130 (152)
262 1y8m_A FIS1; mitochondria, unk 83.7 4.4 0.00015 32.2 7.5 69 44-112 37-105 (144)
263 1zbp_A Hypothetical protein VP 83.3 13 0.00044 33.4 11.1 121 423-555 6-138 (273)
264 2y69_E Cytochrome C oxidase su 82.9 7.2 0.00025 30.5 8.0 63 429-493 68-130 (152)
265 4b4t_P 26S proteasome regulato 82.8 39 0.0013 33.3 21.2 199 295-509 30-262 (445)
266 1zbp_A Hypothetical protein VP 82.7 2.1 7.1E-05 38.4 5.8 53 528-580 8-60 (273)
267 3o48_A Mitochondria fission 1 79.9 2.6 9.1E-05 33.0 4.9 65 81-147 37-106 (134)
268 2ff4_A Probable regulatory pro 79.1 13 0.00043 36.0 10.8 69 418-487 175-247 (388)
269 1v54_E Cytochrome C oxidase po 78.9 17 0.00059 26.8 8.7 49 511-559 39-87 (109)
270 3txn_A 26S proteasome regulato 76.9 55 0.0019 31.5 19.8 126 282-409 20-165 (394)
271 3esl_A Checkpoint serine/threo 73.8 21 0.00072 30.4 9.1 49 499-547 93-145 (202)
272 2qx5_A Nucleoporin NIC96; mRNA 73.4 91 0.0031 32.4 19.5 43 86-130 155-197 (661)
273 4b4t_R RPN7, 26S proteasome re 71.2 30 0.001 34.0 11.2 57 385-441 133-195 (429)
274 3mv2_A Coatomer subunit alpha; 70.5 46 0.0016 30.7 11.2 59 509-581 197-257 (325)
275 4b4t_R RPN7, 26S proteasome re 70.3 17 0.00057 35.8 9.2 95 451-545 133-236 (429)
276 4a1g_A Mitotic checkpoint seri 68.0 40 0.0014 27.2 9.1 48 536-583 84-133 (152)
277 2uwj_G Type III export protein 67.3 34 0.0012 25.1 9.4 86 363-453 21-106 (115)
278 2p58_C Putative type III secre 66.2 37 0.0013 25.0 10.2 86 363-453 22-107 (116)
279 1oyz_A Hypothetical protein YI 65.8 76 0.0026 28.5 23.6 82 247-328 139-222 (280)
280 1n11_A Ankyrin; clathrin, BAND 64.6 1E+02 0.0036 29.8 14.0 18 162-179 85-102 (437)
281 2uwj_G Type III export protein 63.9 41 0.0014 24.7 8.0 76 134-213 21-96 (115)
282 1oyz_A Hypothetical protein YI 63.1 85 0.0029 28.1 23.0 48 279-326 35-82 (280)
283 2p58_C Putative type III secre 62.6 43 0.0015 24.6 8.8 76 134-213 22-97 (116)
284 3esl_A Checkpoint serine/threo 60.6 78 0.0027 26.9 10.9 55 428-483 93-148 (202)
285 3kae_A CDC27, possible protein 60.1 71 0.0024 26.2 9.5 83 491-576 39-139 (242)
286 2wvi_A Mitotic checkpoint seri 59.3 55 0.0019 26.8 8.6 47 536-582 79-127 (164)
287 3bqo_A Telomeric repeat-bindin 56.3 61 0.0021 27.3 8.3 68 501-568 94-168 (211)
288 2qx5_A Nucleoporin NIC96; mRNA 53.4 1.4E+02 0.0047 31.1 12.5 20 318-337 300-319 (661)
289 3kea_A K1L; tropism, ANK repea 49.8 1.4E+02 0.0047 26.9 11.1 142 52-209 34-182 (285)
290 1wgl_A TOLL-interacting protei 46.8 36 0.0012 22.2 4.5 51 64-119 8-58 (59)
291 4b4t_S RPN3, 26S proteasome re 46.1 53 0.0018 32.8 7.7 62 450-511 232-296 (523)
292 4a1g_A Mitotic checkpoint seri 41.6 1.4E+02 0.0047 24.1 10.2 53 431-484 82-135 (152)
293 4aez_C MAD3, mitotic spindle c 41.5 77 0.0026 27.4 7.1 30 551-580 150-179 (223)
294 4gq2_M Nucleoporin NUP120; bet 39.0 1.1E+02 0.0037 33.7 9.7 28 519-546 899-926 (950)
295 1wdy_A 2-5A-dependent ribonucl 38.4 2.1E+02 0.0071 25.2 11.7 52 159-210 7-61 (285)
296 2d2s_A Exocyst complex compone 36.4 99 0.0034 27.1 7.3 88 89-179 23-116 (235)
297 3mkr_B Coatomer subunit alpha; 35.6 98 0.0034 28.5 7.2 60 508-581 187-248 (320)
298 2wvi_A Mitotic checkpoint seri 35.3 1.8E+02 0.0062 23.7 10.6 52 432-484 78-130 (164)
299 3aji_A 26S proteasome non-ATPa 35.3 2.1E+02 0.0071 24.3 10.1 16 164-179 113-128 (231)
300 1ya0_A SMG-7 transcript varian 35.3 79 0.0027 31.6 7.2 44 530-573 165-208 (497)
301 4fke_A Aminopeptidase N; zinc 35.2 4E+02 0.014 29.0 13.4 91 51-146 691-785 (909)
302 1k1a_A B-cell lymphoma 3-encod 34.8 2.1E+02 0.0073 24.4 11.0 182 89-275 11-205 (241)
303 2nsz_A Programmed cell death p 33.2 1.3E+02 0.0045 23.3 6.8 58 284-341 10-72 (129)
304 2nsz_A Programmed cell death p 33.1 1.7E+02 0.0058 22.7 7.8 62 387-448 11-77 (129)
305 4b4t_S RPN3, 26S proteasome re 32.7 81 0.0028 31.5 6.6 62 517-580 231-299 (523)
306 2fu4_A Ferric uptake regulatio 32.5 1.1E+02 0.0038 21.1 5.9 58 110-168 8-66 (83)
307 3i5p_A Nucleoporin NUP170; hel 31.6 4.1E+02 0.014 26.6 11.9 66 513-581 174-247 (525)
308 2d2s_A Exocyst complex compone 30.4 1.9E+02 0.0063 25.4 8.0 22 319-340 25-46 (235)
309 3rjo_A Endoplasmic reticulum a 30.3 3.8E+02 0.013 25.8 14.8 26 122-147 270-295 (419)
310 3hra_A Ankyrin repeat family p 29.9 1.9E+02 0.0064 23.9 8.1 7 96-102 81-87 (201)
311 4gq2_M Nucleoporin NUP120; bet 28.3 5.9E+02 0.02 27.9 13.3 127 287-428 816-950 (950)
312 2ion_A PDCD4, programmed cell 28.0 1.5E+02 0.0051 23.8 6.4 62 387-448 13-79 (152)
313 2ion_A PDCD4, programmed cell 26.6 1.2E+02 0.0041 24.4 5.6 58 284-341 12-74 (152)
314 3ygs_P Procaspase 9; apoptosis 26.3 66 0.0023 23.5 3.7 37 295-331 51-87 (97)
315 3aji_A 26S proteasome non-ATPa 26.0 2.7E+02 0.0093 23.5 8.7 15 292-306 180-194 (231)
316 2fe3_A Peroxide operon regulat 24.9 1.7E+02 0.0059 23.1 6.3 58 110-168 13-70 (145)
317 2ko4_A Mediator of RNA polymer 24.1 1.3E+02 0.0045 20.8 4.4 39 70-110 24-62 (81)
318 2ijq_A Hypothetical protein; s 24.0 1E+02 0.0036 25.0 4.7 63 46-112 33-103 (161)
319 1mzb_A Ferric uptake regulatio 23.7 1.8E+02 0.0061 22.7 6.2 60 108-168 7-67 (136)
320 3bqo_A Telomeric repeat-bindin 23.3 3.4E+02 0.012 22.9 10.0 45 399-443 94-146 (211)
321 1wdy_A 2-5A-dependent ribonucl 23.2 3.7E+02 0.013 23.4 12.2 52 125-180 8-62 (285)
322 3ygs_P Procaspase 9; apoptosis 22.8 1.1E+02 0.0039 22.2 4.4 38 397-434 51-88 (97)
323 2o03_A Probable zinc uptake re 22.6 1.4E+02 0.0047 23.2 5.2 45 89-133 15-59 (131)
324 2w57_A Ferric uptake regulatio 22.5 1.9E+02 0.0066 23.0 6.2 60 109-169 7-67 (150)
325 3twr_A Tankyrase-2; ankyrin re 22.4 2E+02 0.0069 22.7 6.6 15 105-119 56-70 (165)
326 4ets_A Ferric uptake regulatio 22.2 1.7E+02 0.0058 23.8 5.9 68 329-397 14-83 (162)
327 3mwm_A ZUR, putative metal upt 21.9 1.3E+02 0.0044 23.7 4.9 43 89-131 18-60 (139)
328 2b7e_A PRE-mRNA processing pro 21.8 79 0.0027 20.6 2.9 30 100-129 2-31 (59)
329 2xig_A Ferric uptake regulatio 21.6 2E+02 0.0069 22.9 6.2 67 101-168 9-75 (150)
330 3kea_A K1L; tropism, ANK repea 21.1 4.4E+02 0.015 23.4 10.0 14 165-178 70-83 (285)
331 2pm7_A Protein WEB1, protein t 20.8 5.6E+02 0.019 24.5 13.1 25 553-577 338-362 (399)
332 2fe3_A Peroxide operon regulat 20.4 2.3E+02 0.0079 22.3 6.2 13 465-477 37-49 (145)
333 3bu8_A Telomeric repeat-bindin 20.4 2.8E+02 0.0097 23.7 6.6 68 465-532 88-162 (235)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-41 Score=364.04 Aligned_cols=489 Identities=9% Similarity=-0.017 Sum_probs=308.4
Q ss_pred hhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCh
Q 047120 56 FSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLI 135 (634)
Q Consensus 56 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 135 (634)
+.+.|.. ..+...|+.++ .++...|+.++..|.+.|++++|+.+|++|.+ ..|+..++..++.+|.+.|++
T Consensus 63 ~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~ 133 (597)
T 2xpi_A 63 TSTDGSF---LKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDY 133 (597)
T ss_dssp --------------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCH
T ss_pred ccccCcc---CCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcH
Confidence 4556666 67777777664 56889999999999999999999999999996 568889999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-------------------ChhHHHHHHHHHH
Q 047120 136 EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-------------------DSVSYNSMIDGYV 196 (634)
Q Consensus 136 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~ 196 (634)
++|..+++.+... .+++.+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.
T Consensus 134 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (597)
T 2xpi_A 134 ARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYT 211 (597)
T ss_dssp HHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHH
Confidence 9999999988653 678899999999999999999999999965433 3779999999999
Q ss_pred hCCChHHHHHHHhhCccCCCChhH-HHHHHHHHHhcCCcHHHHHHHHhhC-----CC----CCchHHHHHHHHHHhcCCh
Q 047120 197 KSGNIESARELFDSMPIRERNLIS-WNSVLNGYAQLKSGLQFAWQIFEKM-----PE----RDLISWNSMLHGCVKCGKM 266 (634)
Q Consensus 197 ~~g~~~~A~~~~~~m~~~~p~~~~-~~~ll~~~~~~~~~~~~a~~~~~~~-----~~----~~~~~~~~l~~~~~~~g~~ 266 (634)
+.|++++|++.|++|....|+... +..+...+...+ .........+ .. ....+|+.++..|.+.|++
T Consensus 212 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 288 (597)
T 2xpi_A 212 NLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTA---DEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDEL 288 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCH---HHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccc---hhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchH
Confidence 999999999999999887666443 333333222221 1111111211 11 1223344445556666666
Q ss_pred HHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHHhhhCCC---CChhhHHHHHHHHHHcCCchHHHHHHHHHHhc
Q 047120 267 DDAQALFDKMPK--RDVVSWANMIDGYAKLGRVDIARRLFDEMPK---RDVVACNAMMGGYVRNGYSMKALEIFDNMQCE 341 (634)
Q Consensus 267 ~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 341 (634)
++|.++|+++.+ ++..+++.++.+|.+.|++++|..+|+++.+ .+..+|+.++.++.+.|++++|..+++++...
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 368 (597)
T 2xpi_A 289 RRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368 (597)
T ss_dssp HHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 666666666665 5666666666666666666666666666542 34556666666666666666666666666532
Q ss_pred CCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHH
Q 047120 342 LYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWN 418 (634)
Q Consensus 342 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~ 418 (634)
.+.+..++..++..+.+.|++++|..+|+.+.+.. +.+..++..++.+|.+.|++++|+++|+++. ..+..+|+
T Consensus 369 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 445 (597)
T 2xpi_A 369 --HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYL 445 (597)
T ss_dssp --CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHH
T ss_pred --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence 22345556666666666666666666666665532 2345566666666666666666666666543 23455566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CcccC--hhHHHHHHH
Q 047120 419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH---KLEPE--LQHYGCMVD 493 (634)
Q Consensus 419 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~ 493 (634)
.++.+|.+.|++++|.++|+++.+.. ..+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 524 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH
Confidence 66666666666666666666665532 2235566666666666666666666666655421 33444 455666666
Q ss_pred HHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120 494 ILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA 562 (634)
Q Consensus 494 ~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (634)
+|.+.|++++|.+.++++ .. +.+..+|..++.+|...|++++|.+.++++++.+|.++..+..++.+|.
T Consensus 525 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 525 AYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 666666666666666655 22 2245566666666666666666666666666666666666666655553
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-38 Score=337.86 Aligned_cols=475 Identities=10% Similarity=-0.014 Sum_probs=388.7
Q ss_pred HHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHH
Q 047120 94 YSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFA 173 (634)
Q Consensus 94 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 173 (634)
+...|....+...+..+.. ++...|+.++..+.+.|++++|..+++++.+. .|+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSL----SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccchH----HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence 3445666666666654432 57788999999999999999999999999864 46778899999999999999999
Q ss_pred HHHHhhCC--CCChhHHHHHHHHHHhCCChHHHHHHHhhCccCC-----------------CChhHHHHHHHHHHhcCCc
Q 047120 174 RQLFDKMG--IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRE-----------------RNLISWNSVLNGYAQLKSG 234 (634)
Q Consensus 174 ~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------------p~~~~~~~ll~~~~~~~~~ 234 (634)
..+|+.+. .++..+++.++.+|.+.|++++|+++|+++.... ++..+|+.++.+|.+.|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 215 (597)
T 2xpi_A 137 KCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN- 215 (597)
T ss_dssp HHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC-
Confidence 99999984 5788999999999999999999999999654321 246788889999999888
Q ss_pred HHHHHHHHhhCCC--C-CchHHHHHHHHHHhcCChHHHHH--H-HhhCCC----CChhHHHHHHHHHHHcCChHHHHHHh
Q 047120 235 LQFAWQIFEKMPE--R-DLISWNSMLHGCVKCGKMDDAQA--L-FDKMPK----RDVVSWANMIDGYAKLGRVDIARRLF 304 (634)
Q Consensus 235 ~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~--~-~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~ 304 (634)
.++|...|+++.+ | +...+..+...+...+..+.+.. + +..+.. ....+|+.++..|.+.|++++|.++|
T Consensus 216 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 216 FDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 9999999988876 3 23344444443332222221111 0 112211 22345666688899999999999999
Q ss_pred hhCCC--CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc
Q 047120 305 DEMPK--RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN 382 (634)
Q Consensus 305 ~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 382 (634)
+++.+ ++..+|+.++..|.+.|++++|+++|+++.... +.+..++..++.++.+.|++++|..+++.+.+.. +.+
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 99987 789999999999999999999999999998652 3366789999999999999999999999998654 567
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047120 383 GKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459 (634)
Q Consensus 383 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 459 (634)
..++..++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ ..+..+|..++.+|
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 8899999999999999999999999875 4567899999999999999999999999999863 34678999999999
Q ss_pred hccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhc
Q 047120 460 AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-------PMEPN--DVIWRTLLSACRNY 530 (634)
Q Consensus 460 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~ 530 (634)
.+.|++++|.++|+.+.+.. +.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 99999999999999998742 346788999999999999999999999988 44777 78999999999999
Q ss_pred CChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120 531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 531 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
|++++|++.++++++.+|+++.+|..++.+|.+.|++++|.++++++.+..
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999997754
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.3e-26 Score=233.31 Aligned_cols=365 Identities=13% Similarity=0.073 Sum_probs=280.3
Q ss_pred HHHHhCCChHHHHHHHhhCccCCCChhHH-HHHHHHHHhcCCcHHHHHHHHhhCCC---CCchHHHHHHHHHHhcCChHH
Q 047120 193 DGYVKSGNIESARELFDSMPIRERNLISW-NSVLNGYAQLKSGLQFAWQIFEKMPE---RDLISWNSMLHGCVKCGKMDD 268 (634)
Q Consensus 193 ~~~~~~g~~~~A~~~~~~m~~~~p~~~~~-~~ll~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~ 268 (634)
..+.+.|++++|++.++++....|+.... ..+...+...++ .+.|...++.... .+..+|..+...+.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR-LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 34445556666666555555444443332 223333344444 5666555555443 344566777777777777777
Q ss_pred HHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHHHhhhCCC--C-ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcC
Q 047120 269 AQALFDKMPK--R-DVVSWANMIDGYAKLGRVDIARRLFDEMPK--R-DVVACNAMMGGYVRNGYSMKALEIFDNMQCEL 342 (634)
Q Consensus 269 A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 342 (634)
|...|+++.+ | +..++..+...+.+.|++++|...|+++.+ | +...+..+...+...|++++|++.|+++...
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 164 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET- 164 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-
Confidence 7777777653 3 445678888888888888888888877653 3 4456777888888889999999999988854
Q ss_pred CCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHH
Q 047120 343 YLHP-DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWN 418 (634)
Q Consensus 343 ~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~ 418 (634)
.| +..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|++.. +.+..++.
T Consensus 165 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 165 --QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp --CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 45 45778888888889999999999999888864 4456788888899999999999999988765 34677889
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc
Q 047120 419 AMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR 497 (634)
Q Consensus 419 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 497 (634)
.+...|...|++++|+..|+++.+. .|+ ..+|..+..++.+.|++++|...++.+.+. .+.+..++..++..+.+
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHH
Confidence 9999999999999999999999885 454 668889999999999999999999999874 24567788999999999
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCC
Q 047120 498 AGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGM 566 (634)
Q Consensus 498 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 566 (634)
.|++++|.+.++++ ...|+ ..++..++..+.+.|++++|...++++++..|.++..|..++.++...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999987 44454 77889999999999999999999999999999999999999998887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=6.7e-25 Score=220.82 Aligned_cols=348 Identities=13% Similarity=0.067 Sum_probs=303.1
Q ss_pred HHHHHhcCCcHHHHHHHHhhCCC--C-CchHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChH
Q 047120 225 LNGYAQLKSGLQFAWQIFEKMPE--R-DLISWNSMLHGCVKCGKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVD 298 (634)
Q Consensus 225 l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 298 (634)
...+.+.|+ +++|...++++.+ | +...+..+...+...|++++|...++...+ .+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGD-FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345566788 9999999988765 4 445667777888999999999999988764 46789999999999999999
Q ss_pred HHHHHhhhCCC--C-ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCH-hHHHHHHHHHHccCChHHHHHHHHHH
Q 047120 299 IARRLFDEMPK--R-DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD-ASLVIVLSAIAQLGHIDKGVAIHRYL 374 (634)
Q Consensus 299 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~ 374 (634)
+|...|+++.+ | +..+|..+..++...|++++|++.|+++... .|+. ..+..+...+...|++++|...++.+
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999998863 3 4567999999999999999999999999854 5664 45677778888999999999999999
Q ss_pred HHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HH
Q 047120 375 EKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DI 450 (634)
Q Consensus 375 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~ 450 (634)
.+.. +.+...+..+..++...|++++|...|+++. +.+...|..+...+...|++++|+..+++.... .|+ ..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHH
Confidence 8864 4467889999999999999999999999886 345678999999999999999999999999875 565 67
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 047120 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM--PMEPNDVIWRTLLSACR 528 (634)
Q Consensus 451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~ 528 (634)
++..+..++...|++++|...++.+.+. .+.+...|..++..|.+.|++++|.+.++++ ..+++..++..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 8999999999999999999999999873 1334678999999999999999999999998 33456889999999999
Q ss_pred hcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120 529 NYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
..|++++|...++++++..|+++..+..++.+|.+.|++++|.+.++++.+..
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999997653
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=2.9e-26 Score=234.42 Aligned_cols=184 Identities=11% Similarity=0.159 Sum_probs=167.3
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCC---------hHHHHHHHHHHHHcCCCCch
Q 047120 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH---------IDKGVAIHRYLEKDQFSLNG 383 (634)
Q Consensus 313 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~ 383 (634)
..++.+|.+|++.|+.++|+++|++|... |+.||..||+.+|.+|++.+. ++.|.++|++|.+.|+.||.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 45788899999999999999999999988 899999999999999987654 67899999999999999999
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhcc----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047120 384 KHGVALIDMYSKCGSIENAIKVFEQIE----DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459 (634)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 459 (634)
.+|+++|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999886 5789999999999999999999999999999999999999999999999
Q ss_pred hccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhcc
Q 047120 460 AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA 498 (634)
Q Consensus 460 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 498 (634)
++.|++++|.+++++|++ .+..|+..||+.++..|...
T Consensus 186 ~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999988 78999999999999888753
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=3.5e-27 Score=241.11 Aligned_cols=198 Identities=8% Similarity=0.038 Sum_probs=172.4
Q ss_pred HHHHHHHHHHhCCCCchh-hhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCC---------
Q 047120 30 VNQIHARMITTGFIKNTH-LTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLD--------- 99 (634)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------- 99 (634)
.+.+...+.+.+..+++. +++.+|.+|++.|++ ++|.++|++|...|++||..+||+||.+|++.+.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~---~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDV---LEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCH---HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 456777788787776654 589999999999998 9999999999999999999999999999998765
Q ss_pred cchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 047120 100 PKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDK 179 (634)
Q Consensus 100 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 179 (634)
.+.|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC----CCChhHHHHHHHHHHhCCChHHHHHHHhhCccC--CCChhHHHHHHHHHHh
Q 047120 180 MG----IRDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQ 230 (634)
Q Consensus 180 ~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~p~~~~~~~ll~~~~~ 230 (634)
|. .||..+|++||.+|++.|++++|.++|++|.+. .|+..||+.++..+..
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 95 489999999999999999999999999999876 7999999999888875
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.3e-23 Score=216.03 Aligned_cols=422 Identities=10% Similarity=-0.058 Sum_probs=305.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCC-hhHHHHHHHHHHh
Q 047120 154 LFLQNCLISLYVRCGYLEFARQLFDKMG--IRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN-LISWNSVLNGYAQ 230 (634)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~-~~~~~~ll~~~~~ 230 (634)
...+..+...+.+.|++++|+..|+++. .|+...|..+..++.+.|++++|++.++++....|+ ...+..+..++..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 3456667777888888888888888775 367778888888888888888888888887766454 4567777777777
Q ss_pred cCCcHHHHHHHHhhCCC---CCchHHHHHHHHHHhcCChHHHHHHHhhCCC----CChhHHHHH---HHHHHHcCChHHH
Q 047120 231 LKSGLQFAWQIFEKMPE---RDLISWNSMLHGCVKCGKMDDAQALFDKMPK----RDVVSWANM---IDGYAKLGRVDIA 300 (634)
Q Consensus 231 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l---~~~~~~~g~~~~A 300 (634)
.|+ .++|...|+++.. ++......++..+........+.+.+..+.. ++....... ............+
T Consensus 86 ~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGK-FADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTC-HHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred Hhh-HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 777 8888888877654 2333344444444443333333333322211 100000000 0000011111112
Q ss_pred HHHhhhCCC---------C-ChhhHHHHHHHHHH---cCCchHHHHHHHHHHh-----cCCCCC--------CHhHHHHH
Q 047120 301 RRLFDEMPK---------R-DVVACNAMMGGYVR---NGYSMKALEIFDNMQC-----ELYLHP--------DDASLVIV 354 (634)
Q Consensus 301 ~~~~~~~~~---------~-~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~-----~~~~~p--------~~~~~~~l 354 (634)
...+..... + +...+......+.. .|++++|+..|+++.. . ...| +...+..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQL-DKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHT-TTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhh-ccCccccccChHHHHHHHHH
Confidence 222222211 1 24445555555554 8999999999999986 2 1122 24577788
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChH
Q 047120 355 LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGE 431 (634)
Q Consensus 355 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 431 (634)
...+...|++++|...++.+.+.... ...+..+..++...|++++|...++++.. .+...|..+...|...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999887533 88888999999999999999999998763 46678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC
Q 047120 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM 511 (634)
Q Consensus 432 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 511 (634)
+|...++++.+.. ..+...+..+...+...|++++|..+++.+.+.. +.+...+..++..|.+.|++++|...++++
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999998863 2246788899999999999999999999998742 335678889999999999999999999887
Q ss_pred ----CCCCC----HHHHHHHHHHHHh---cCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 512 ----PMEPN----DVIWRTLLSACRN---YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 512 ----~~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
+..++ ...+..+...+.. .|++++|...++++++..|.++..+..++.+|.+.|++++|.+.++++.+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22222 3488889999999 999999999999999999999999999999999999999999999999776
Q ss_pred CC
Q 047120 581 NL 582 (634)
Q Consensus 581 ~~ 582 (634)
..
T Consensus 479 ~~ 480 (514)
T 2gw1_A 479 AR 480 (514)
T ss_dssp CS
T ss_pred cc
Confidence 44
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.2e-22 Score=212.62 Aligned_cols=446 Identities=10% Similarity=-0.017 Sum_probs=300.6
Q ss_pred cccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 047120 84 PFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISL 163 (634)
Q Consensus 84 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 163 (634)
...|......+.+.|++++|+..|+++.+.+ |+..+|..+..++.+.|++++|...++.+++.. +.+...+..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3456667777778888888888888887743 677777777778888888888888888877765 2345567777777
Q ss_pred HHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCChHHHHHHHhhCccC--CCChhHHHHHHHHHHhcCCcHHHH
Q 047120 164 YVRCGYLEFARQLFDKMGI---RDSVSYNSMIDGYVKSGNIESARELFDSMPIR--ERNLISWNSVLNGYAQLKSGLQFA 238 (634)
Q Consensus 164 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~p~~~~~~~ll~~~~~~~~~~~~a 238 (634)
|...|++++|...|+++.. .+......++..+........+.+.+..+... .|+...+..-...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------- 151 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER----------- 151 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH-----------
Confidence 7777777777777766532 23333333333333322222222222222111 0111100000000
Q ss_pred HHHHhhCCC-CCchHHHHHHHHHHhcCChHHHHHHHhhCCCC-ChhHHHHHHHHHHH---cCChHHHHHHhhhCCC----
Q 047120 239 WQIFEKMPE-RDLISWNSMLHGCVKCGKMDDAQALFDKMPKR-DVVSWANMIDGYAK---LGRVDIARRLFDEMPK---- 309 (634)
Q Consensus 239 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~---- 309 (634)
...... |+.... ..+.......... ..+.+| +...+..+...+.. .|++++|...|+++.+
T Consensus 152 ---~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 221 (514)
T 2gw1_A 152 ---KDKQENLPSVTSM----ASFFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221 (514)
T ss_dssp --------CCCCHHHH----HHHHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred ---HhhccCCchhHHH----HHHHhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhh
Confidence 000000 111111 1111111000000 001111 23344444444443 6778888877776543
Q ss_pred -------------CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHH
Q 047120 310 -------------RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEK 376 (634)
Q Consensus 310 -------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 376 (634)
.+..++..+...+...|++++|+..|+++... .|+...+..+...+...|++++|...++.+.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 298 (514)
T 2gw1_A 222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL---FPRVNSYIYMALIMADRNDSTEYYNYFDKALK 298 (514)
T ss_dssp HTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHT
T ss_pred hhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhh
Confidence 13457778888899999999999999998855 45577788888889999999999999998887
Q ss_pred cCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 047120 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFT 453 (634)
Q Consensus 377 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 453 (634)
.. +.+...+..+..++...|++++|...|+++. ..+...+..+...+...|++++|...++++.+.. ..+...+.
T Consensus 299 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 376 (514)
T 2gw1_A 299 LD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPN 376 (514)
T ss_dssp TC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHH
T ss_pred cC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHH
Confidence 64 4467788889999999999999999998875 3466788999999999999999999999998752 22467888
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCcccC----hhHHHHHHHHHhc---cCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 047120 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPE----LQHYGCMVDILGR---AGHIEAARNLIEDM-PMEP-NDVIWRTLL 524 (634)
Q Consensus 454 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 524 (634)
.+...+...|++++|...++.+.+...-.++ ...+..++..+.+ .|++++|.+.++++ ...| +..++..+.
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 456 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLA 456 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 9999999999999999999998774222222 3388899999999 99999999999987 3334 577888999
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCCchHHHHH
Q 047120 525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558 (634)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 558 (634)
..+...|++++|...++++++.+|.++..+..+.
T Consensus 457 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 457 QMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 9999999999999999999999999888777663
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=2.9e-22 Score=210.93 Aligned_cols=425 Identities=10% Similarity=0.008 Sum_probs=266.7
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHH
Q 047120 119 KFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI---RDSVSYNSMIDGY 195 (634)
Q Consensus 119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 195 (634)
...+..+...+.+.|++++|...|+.+++.. +.++..+..+..+|.+.|++++|++.|+++.. .+...|..+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3567777788889999999999999999876 34678888999999999999999999988753 3667888899999
Q ss_pred HhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCC------CchHHHHHHHHHHhcCChHHH
Q 047120 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER------DLISWNSMLHGCVKCGKMDDA 269 (634)
Q Consensus 196 ~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A 269 (634)
...|++++|++.|+.+ ...|+... ..+..+...+. ...|...++.+... ........+..+....+.+.+
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~~~~~~--~~~~~~~~~~~-~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLNGDFDG--ASIEPMLERNL-NKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C-------------CHHHHHH-HHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHcCCHHHHHHHHHHH-hcCCCCCh--HHHHHHHHHHH-HHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 9999999999999643 33333221 11223333333 56677777766541 112233445566667777777
Q ss_pred HHHHhhCCCCChh---HHHHHHHHHHH--------cCChHHHHHHhhhCCCC--C--------hhhHHHHHHHHHHcCCc
Q 047120 270 QALFDKMPKRDVV---SWANMIDGYAK--------LGRVDIARRLFDEMPKR--D--------VVACNAMMGGYVRNGYS 328 (634)
Q Consensus 270 ~~~~~~~~~~~~~---~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~--~--------~~~~~~l~~~~~~~g~~ 328 (634)
...+......+.. ....+...+.. .|++++|..+|+++.+. + ..++..+...+...|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 7777666654433 33333333222 24667777777766542 2 12455556666777777
Q ss_pred hHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHh
Q 047120 329 MKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ 408 (634)
Q Consensus 329 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (634)
++|+..|+++... .|+...+..+...+...|+++.|...++.+.+.. +.+..++..+..++...|++++|...|++
T Consensus 260 ~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 260 LDAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 7777777777743 4556666666777777777777777777776653 33556666677777777777777777766
Q ss_pred cc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-
Q 047120 409 IE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE- 484 (634)
Q Consensus 409 ~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~- 484 (634)
+. ..+...|..+...|...|++++|...++++.+.. ..+...+..+...+...|++++|...++.+.+...-.++
T Consensus 336 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 336 AQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 54 2345566667777777777777777777766542 223456666666777777777777777766552211111
Q ss_pred ---hhHHHHHHHHHhcc----------CCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120 485 ---LQHYGCMVDILGRA----------GHIEAARNLIEDM-PME-PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549 (634)
Q Consensus 485 ---~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (634)
...+..+...+.+. |++++|...++++ ... .+..++..+...+...|++++|...+++++++.|.
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 11133334555555 6677777666665 222 33556666666666677777777777777766666
Q ss_pred CCch
Q 047120 550 NSSS 553 (634)
Q Consensus 550 ~~~~ 553 (634)
++..
T Consensus 495 ~~~~ 498 (537)
T 3fp2_A 495 MDEK 498 (537)
T ss_dssp CHHH
T ss_pred cHHH
Confidence 5544
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1e-21 Score=201.89 Aligned_cols=323 Identities=12% Similarity=0.092 Sum_probs=265.9
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHhhhCCC---CChhhHHHHHHHH
Q 047120 249 DLISWNSMLHGCVKCGKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVDIARRLFDEMPK---RDVVACNAMMGGY 322 (634)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 322 (634)
+...+..+...+.+.|++++|..+|+++.+ .+..++..+...|...|++++|...|+++.+ .+..++..++..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 345677777888888888888888887753 4677888888889999999999998888764 3567888899999
Q ss_pred HHcCCchHHHHHHHHHHhcCCCCCCH----hHHHHH------------HHHHHccCChHHHHHHHHHHHHcCCCCchhHH
Q 047120 323 VRNGYSMKALEIFDNMQCELYLHPDD----ASLVIV------------LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHG 386 (634)
Q Consensus 323 ~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 386 (634)
...|++++|+..|+++.. ..|+. ..+..+ ...+...|++++|...++.+.+.. +.+..++
T Consensus 105 ~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLK---SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 999999999999999984 45654 344443 444788999999999999998764 4577889
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHH-------
Q 047120 387 VALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD-ITFTGL------- 455 (634)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l------- 455 (634)
..++.+|.+.|++++|...|+++. +.+..+|..++..|...|++++|+..|+++... .|+. ..+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHH
Confidence 999999999999999999999886 457889999999999999999999999999874 5554 344444
Q ss_pred -----HHHHhccCCHHHHHHHHHHhHHhcCcccC-----hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 047120 456 -----LNACAHAGLVKEGLLCFELMRRIHKLEPE-----LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTL 523 (634)
Q Consensus 456 -----l~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 523 (634)
...+.+.|++++|..+++.+.+. .|+ ...|..++.++.+.|++++|++.++++ ...| +..+|..+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 78899999999999999999874 344 447889999999999999999999997 4344 68899999
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHH------------HHHhcCC-----CchHHHHHHHH-HHhC
Q 047120 524 LSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS------------NMFAGLG-----MWNDARRVRSM-MKER 580 (634)
Q Consensus 524 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~A~~~~~~-~~~~ 580 (634)
+.+|...|++++|...++++++.+|.++..+..++ ..|...| +.+++.+.+++ ..+.
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~ 410 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW 410 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998 4455566 56677877776 3444
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=7.4e-22 Score=207.84 Aligned_cols=426 Identities=9% Similarity=-0.041 Sum_probs=321.0
Q ss_pred CcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 047120 83 DPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLIS 162 (634)
Q Consensus 83 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 162 (634)
....|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++.+.|++++|.+.++++++..+ .+...+..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 34668888999999999999999999998843 33556788888899999999999999999998763 36778888999
Q ss_pred HHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCC----hhHHHHHHHHHHhcCCcHHHH
Q 047120 163 LYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN----LISWNSVLNGYAQLKSGLQFA 238 (634)
Q Consensus 163 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~----~~~~~~ll~~~~~~~~~~~~a 238 (634)
++...|++++|...|+.+.. +.......+..+...+...+|+..++++....|+ .......+..+..... .+.+
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 179 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD-SHLE 179 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC-HHHH
T ss_pred HHHHcCCHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC-hHHH
Confidence 99999999999999975532 2222233344555566678899999888765221 1122333444445555 6677
Q ss_pred HHHHhhCCCCCch---HHHHHHHHHH--------hcCChHHHHHHHhhCCC--CC--------hhHHHHHHHHHHHcCCh
Q 047120 239 WQIFEKMPERDLI---SWNSMLHGCV--------KCGKMDDAQALFDKMPK--RD--------VVSWANMIDGYAKLGRV 297 (634)
Q Consensus 239 ~~~~~~~~~~~~~---~~~~l~~~~~--------~~g~~~~A~~~~~~~~~--~~--------~~~~~~l~~~~~~~g~~ 297 (634)
...+......+.. ....+...+. ..|++++|..+++++.+ |+ ..++..+...+...|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 6666666554433 3333333322 22588999999999876 33 23577777889999999
Q ss_pred HHHHHHhhhCCC--CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHH
Q 047120 298 DIARRLFDEMPK--RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLE 375 (634)
Q Consensus 298 ~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 375 (634)
++|...|++..+ |+...|..+...+...|++++|+..++++.... +.+..++..+...+...|++++|...++.+.
T Consensus 260 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 260 LDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999998864 667788899999999999999999999998651 3356788899999999999999999999999
Q ss_pred HcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----C
Q 047120 376 KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE-----P 447 (634)
Q Consensus 376 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-----p 447 (634)
+.. +.+...+..+..++...|++++|...++++. ..+...+..+...+...|++++|...++++.+.... .
T Consensus 338 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 338 SLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 865 4456888899999999999999999999876 346778999999999999999999999998764211 1
Q ss_pred CHHHHHHHHHHHhcc----------CCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC
Q 047120 448 DDITFTGLLNACAHA----------GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN 516 (634)
Q Consensus 448 ~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 516 (634)
....+......+... |++++|...++.+.+.. +.+...+..+..+|.+.|++++|.+.|+++ ...|+
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 122345556677777 99999999999998742 345678999999999999999999999987 44454
Q ss_pred H
Q 047120 517 D 517 (634)
Q Consensus 517 ~ 517 (634)
.
T Consensus 495 ~ 495 (537)
T 3fp2_A 495 M 495 (537)
T ss_dssp C
T ss_pred c
Confidence 3
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=1.3e-20 Score=193.55 Aligned_cols=359 Identities=12% Similarity=0.025 Sum_probs=230.4
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHhhCccCCC-ChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC---CCchHHHHHHHH
Q 047120 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRER-NLISWNSVLNGYAQLKSGLQFAWQIFEKMPE---RDLISWNSMLHG 259 (634)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~ 259 (634)
+...|..++..+.+.|++++|+.+|+++....| +...+..+..++...|+ .+.|...|+++.+ .+...+..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK-SKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 456788888888888888888888888776533 45566666777777777 7777777776654 234556666666
Q ss_pred HHhcCChHHHHHHHhhCCC--CC-h---hHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHH
Q 047120 260 CVKCGKMDDAQALFDKMPK--RD-V---VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE 333 (634)
Q Consensus 260 ~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 333 (634)
|.+.|++++|.+.|+++.+ |+ . ..+..++..+... .+..+...+...|++++|+.
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666666654 22 1 3333333321110 11122334555666666666
Q ss_pred HHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---
Q 047120 334 IFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE--- 410 (634)
Q Consensus 334 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--- 410 (634)
.|+++... .+.+...+..+...+...|++++|...++.+.+.. +.+..++..++.+|...|++++|+..|+++.
T Consensus 165 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 165 FLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66666543 12244555666666666666666666666665542 3345666666666666666666666666654
Q ss_pred CCChhHHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHH
Q 047120 411 DGSVDHWNAM------------INGLAIHGLGELAFDLLMEMERLSIEPD-----DITFTGLLNACAHAGLVKEGLLCFE 473 (634)
Q Consensus 411 ~~~~~~~~~l------------i~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~ 473 (634)
..+...+..+ +..+...|++++|...|+++.+. .|+ ...+..+..++.+.|++++|...++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1233333333 77888889999999999988874 455 3467788888889999999999999
Q ss_pred HhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----Chh
Q 047120 474 LMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSA------------CRNYE-----NLN 534 (634)
Q Consensus 474 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~------------~~~~g-----~~~ 534 (634)
.+.+. .+.+...|..++.+|...|++++|.+.++++ ...|+ ...+..+..+ |...| +.+
T Consensus 320 ~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ 397 (450)
T 2y4t_A 320 EVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397 (450)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT
T ss_pred HHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHH
Confidence 88763 1335778888999999999999999999887 55565 4555555532 33334 667
Q ss_pred HHHHHHHH-HhccCCCCCc----------hHHHHHHHHhcCCCchH
Q 047120 535 VGEPVAKH-LIGMDSSNSS----------SYVLLSNMFAGLGMWND 569 (634)
Q Consensus 535 ~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 569 (634)
++.+.+++ +++..|++.. .+..+..+|...|+.++
T Consensus 398 ~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 398 EIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 78888886 6777775432 34455555555555443
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=1.5e-16 Score=171.95 Aligned_cols=482 Identities=12% Similarity=0.114 Sum_probs=335.6
Q ss_pred HHHHHHhCCCCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHH----
Q 047120 34 HARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCL---- 109 (634)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---- 109 (634)
.+.-+..| ..++.++|+|...|..++.- ..+++.+ |..-=..++.-||...|+..|.-.|++
T Consensus 862 LE~~~~~g-~~~~~~hnalakiyid~n~n-----pe~fL~~--------n~~yd~~~vgkyce~rDp~la~iay~~g~~d 927 (1630)
T 1xi4_A 862 LEARIHEG-CEEPATHNALAKIYIDSNNN-----PERFLRE--------NPYYDSRVVGKYCEKRDPHLACVAYERGQCD 927 (1630)
T ss_pred HHHHHhCC-CCCHHHHHHHHHHHhccCCC-----HHHHhhc--------cCcccHHHHHHHHHhcCcchHHHHhcccCCc
Confidence 44444445 66888999999999987744 3333322 222234677788888888887777664
Q ss_pred --HHHCCCCCCcchHHHHHHHHhccCChHHHH-----------HHHHHHHHhcC--CCChhHHHHHHHHHHhcCCHHHHH
Q 047120 110 --MLDNGVSVDKFSASLVLKACSRLGLIEEGL-----------QIHGLLRKVAF--GSDLFLQNCLISLYVRCGYLEFAR 174 (634)
Q Consensus 110 --m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~ 174 (634)
+++ +.-....|....+-+.+..+.+-=- ++.++.....+ ..++.--...+..|...|...+|+
T Consensus 928 ~eli~--vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~Eai 1005 (1630)
T 1xi4_A 928 LELIN--VCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELI 1005 (1630)
T ss_pred HHHHH--HHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHH
Confidence 010 1122223443333333333322111 22222222111 233444456677788888888888
Q ss_pred HHHhhCCC-C-----ChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCC
Q 047120 175 QLFDKMGI-R-----DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPER 248 (634)
Q Consensus 175 ~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 248 (634)
++++++.. + +...-+.++....+. +..+..++..+... .+ ...+...+...+. .++|..+|++....
T Consensus 1006 eLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~--~d---~~eIA~Iai~lgl-yEEAf~IYkKa~~~ 1078 (1630)
T 1xi4_A 1006 ELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN--YD---APDIANIAISNEL-FEEAFAIFRKFDVN 1078 (1630)
T ss_pred HHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--cc---HHHHHHHHHhCCC-HHHHHHHHHHcCCH
Confidence 88888752 2 234555666666666 55666666655542 12 3335556666777 89999999887421
Q ss_pred CchHHHHHHHHHH-hcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCC
Q 047120 249 DLISWNSMLHGCV-KCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGY 327 (634)
Q Consensus 249 ~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 327 (634)
...+..+. ..+++++|.++.++. .+..+|..+..++...|++++|...|.+. .|...|..++.++.+.|+
T Consensus 1079 -----~~A~~VLie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGk 1149 (1630)
T 1xi4_A 1079 -----TSAVQVLIEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGN 1149 (1630)
T ss_pred -----HHHHHHHHHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCC
Confidence 11122233 778899999988877 44778889999999999999999999665 667778889999999999
Q ss_pred chHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHH
Q 047120 328 SMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFE 407 (634)
Q Consensus 328 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 407 (634)
+++|++.|....+. .++....+.++.+|++.++++....+. + .++...+..+...|...|++++|..+|.
T Consensus 1150 yEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~ 1219 (1630)
T 1xi4_A 1150 WEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYN 1219 (1630)
T ss_pred HHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999887744 344444456888888888888655443 1 3455666778999999999999999998
Q ss_pred hccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhH
Q 047120 408 QIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487 (634)
Q Consensus 408 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 487 (634)
.+ ..|..++.+|.+.|++++|.+.+++. -+..+|..+..+|...|++..|......+ ..+...
T Consensus 1220 kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~de 1282 (1630)
T 1xi4_A 1220 NV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADE 1282 (1630)
T ss_pred hh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHH
Confidence 85 48899999999999999999999876 25688988889999999998888766543 235667
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHH--hcCChhHHHHHHHHHhccCC-----CCCchHHHHH
Q 047120 488 YGCMVDILGRAGHIEAARNLIEDM-PMEPND-VIWRTLLSACR--NYENLNVGEPVAKHLIGMDS-----SNSSSYVLLS 558 (634)
Q Consensus 488 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~ 558 (634)
+..++..|.+.|.+++|+.+++.. +.+|.. ..|.-|...+. +.++..++.+.|..-+...| .++..|..++
T Consensus 1283 Leeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv 1362 (1630)
T 1xi4_A 1283 LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 1362 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHH
Confidence 778999999999999999999876 655553 35655555554 56788888888887777666 6778899999
Q ss_pred HHHhcCCCchHHHHHH
Q 047120 559 NMFAGLGMWNDARRVR 574 (634)
Q Consensus 559 ~~~~~~g~~~~A~~~~ 574 (634)
.+|.+.|++++|...+
T Consensus 1363 ~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1363 FLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHhcccHHHHHHHH
Confidence 9999999999998654
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=6.4e-19 Score=174.79 Aligned_cols=307 Identities=11% Similarity=0.057 Sum_probs=179.5
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHhhhCCC---CChhhHHHHHHHHH
Q 047120 250 LISWNSMLHGCVKCGKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVDIARRLFDEMPK---RDVVACNAMMGGYV 323 (634)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 323 (634)
+..+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|...|+++.+ .+...|..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 34556666777777888888877777653 3466777777777778888888777777653 35567777777888
Q ss_pred HcCCchHHHHHHHHHHhcCCCCC---CH-hHHHHH------------HHHHHccCChHHHHHHHHHHHHcCCCCchhHHH
Q 047120 324 RNGYSMKALEIFDNMQCELYLHP---DD-ASLVIV------------LSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGV 387 (634)
Q Consensus 324 ~~g~~~~A~~~~~~m~~~~~~~p---~~-~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 387 (634)
..|++++|+..|+++. ...| +. ..+..+ ...+...|++++|...++.+.+.. +.+...+.
T Consensus 83 ~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVL---KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HcCChHHHHHHHHHHH---hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 8888888888888777 3455 32 222222 345556666666666666665543 33455566
Q ss_pred HHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHH----------
Q 047120 388 ALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFT---------- 453 (634)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~---------- 453 (634)
.+..++...|++++|...++++. +.+...+..+...+...|++++|...+++..+. .|+ ...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHH
Confidence 66666666666666666666554 234455666666666666666666666666553 233 22221
Q ss_pred --HHHHHHhccCCHHHHHHHHHHhHHhcCcccCh--hHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047120 454 --GLLNACAHAGLVKEGLLCFELMRRIHKLEPEL--QHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSAC 527 (634)
Q Consensus 454 --~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 527 (634)
.+...+.+.|++++|...++.+.+...-.+.. ..+..+...+.+.|++++|.+.++++ ...| +..++..+...+
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 12344555666666666666555421111100 12334555555666666666666555 2222 345555555556
Q ss_pred HhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120 528 RNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA 562 (634)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (634)
...|++++|...++++++.+|.++..+..+..++.
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 66666666666666666666665555555555443
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=1.2e-18 Score=172.87 Aligned_cols=296 Identities=14% Similarity=0.068 Sum_probs=248.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHhhhCCC---CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCC-CHhHHHHHH
Q 047120 280 DVVSWANMIDGYAKLGRVDIARRLFDEMPK---RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP-DDASLVIVL 355 (634)
Q Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll 355 (634)
++..+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|+..++++... .| +...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL---KMDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCcchHHHHHH
Confidence 456778889999999999999999998764 45778999999999999999999999999865 45 567888999
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCC--CchhHHHHH------------HHHhHhcCCHHHHHHHHHhcc---CCChhHHH
Q 047120 356 SAIAQLGHIDKGVAIHRYLEKDQFS--LNGKHGVAL------------IDMYSKCGSIENAIKVFEQIE---DGSVDHWN 418 (634)
Q Consensus 356 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~ 418 (634)
..+...|++++|...++.+.+.... .+...+..+ ...+...|++++|...++++. +.+...+.
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 158 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRE 158 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 9999999999999999999876420 244455444 578899999999999999876 45777899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHH--------
Q 047120 419 AMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYG-------- 489 (634)
Q Consensus 419 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~-------- 489 (634)
.+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+. .|+ ...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHH
Confidence 99999999999999999999999752 335678999999999999999999999999874 233 22222
Q ss_pred ----HHHHHHhccCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHH
Q 047120 490 ----CMVDILGRAGHIEAARNLIEDM-PMEPN-D----VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559 (634)
Q Consensus 490 ----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 559 (634)
.++..+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|...++++++.+|.++..+..++.
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3367799999999999999987 33344 3 235567788999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHHHHhCCC
Q 047120 560 MFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
+|...|++++|.+.++++.+...
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999987643
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=6.9e-16 Score=166.94 Aligned_cols=417 Identities=13% Similarity=0.128 Sum_probs=306.5
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 047120 118 DKFSASLVLKACSRLGLIEEGLQIHGLLRKVA--FGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGY 195 (634)
Q Consensus 118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 195 (634)
++.--....+++...|.+.+|.++++.+.-.+ +.-+....+.|+.+..+. +..+..++.++...-+ ...+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 33344667888889999999999999988432 223456667777776666 5566666666655333 44577888
Q ss_pred HhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhh
Q 047120 196 VKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDK 275 (634)
Q Consensus 196 ~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 275 (634)
...|.+++|..+|++... .....+.++. ..++ +++|.++.++. .+..+|..+..++...|++++|...|.+
T Consensus 1060 i~lglyEEAf~IYkKa~~---~~~A~~VLie---~i~n-ldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV---NTSAVQVLIE---HIGN-LDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC---HHHHHHHHHH---HHhh-HHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 899999999999999742 1222233333 4455 99999988877 4467788999999999999999999977
Q ss_pred CCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCC--CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHH
Q 047120 276 MPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK--RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVI 353 (634)
Q Consensus 276 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 353 (634)
. .|...|..++..+.+.|++++|.+.|....+ +++...+.++.+|++.+++++.... .. .|+...+..
T Consensus 1131 A--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~f----I~----~~n~ad~~~ 1200 (1630)
T 1xi4_A 1131 A--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF----IN----GPNNAHIQQ 1200 (1630)
T ss_pred c--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH----Hh----CCCHHHHHH
Confidence 6 6778888899999999999999999977653 4444455688999999888853333 21 345567778
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHH
Q 047120 354 VLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELA 433 (634)
Q Consensus 354 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 433 (634)
+...|...|++++|..+|..+ ..|..++.+|.+.|++++|.+.+++. .+..+|..+..+|...|++..|
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHH
Confidence 999999999999999999875 47889999999999999999999987 4568899999999999999988
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHh--ccCCHHHHHHHHHhC
Q 047120 434 FDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG--RAGHIEAARNLIEDM 511 (634)
Q Consensus 434 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~ 511 (634)
...... +..++..+..++..|.+.|.+++|+++++...... +-....|.-|..+|. +-++..++.++|..-
T Consensus 1270 ~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le--raH~gmftELaiLyaKy~peklmEhlk~f~~r 1342 (1630)
T 1xi4_A 1270 QMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWSR 1342 (1630)
T ss_pred HHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 887664 23356667788889999999999999998776521 223445655666655 455666777776543
Q ss_pred -CCCC------CHHHHHHHHHHHHhcCChhHHHHHHHHHhcc------------CCCCCchHHHHHHHHhcCC-------
Q 047120 512 -PMEP------NDVIWRTLLSACRNYENLNVGEPVAKHLIGM------------DSSNSSSYVLLSNMFAGLG------- 565 (634)
Q Consensus 512 -~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------~p~~~~~~~~l~~~~~~~g------- 565 (634)
.++| +...|..+...|.+.|+++.|....-+-... .+.++..|+..+..|...+
T Consensus 1343 ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndL 1422 (1630)
T 1xi4_A 1343 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDL 1422 (1630)
T ss_pred cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHH
Confidence 4443 4667888888899999999888433222111 3567777777777776665
Q ss_pred --------CchHHHHHHH
Q 047120 566 --------MWNDARRVRS 575 (634)
Q Consensus 566 --------~~~~A~~~~~ 575 (634)
+++++.+++.
T Consensus 1423 l~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1423 LMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHhhhcCChHHHHHHHH
Confidence 6666666665
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=9.4e-18 Score=164.27 Aligned_cols=285 Identities=9% Similarity=0.005 Sum_probs=214.8
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHhhhCCC---CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCC-CHhHHHHH
Q 047120 279 RDVVSWANMIDGYAKLGRVDIARRLFDEMPK---RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP-DDASLVIV 354 (634)
Q Consensus 279 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~l 354 (634)
.+...+..++..+...|++++|.++|+++.+ .+...+..++..+...|++++|+.+++++... .| +...+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL---YPSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHH
Confidence 3445555666666667777777777766643 34455666777777788888888888887754 33 45567777
Q ss_pred HHHHHccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCCh
Q 047120 355 LSAIAQLG-HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLG 430 (634)
Q Consensus 355 l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 430 (634)
...+...| ++++|...++.+.+.. +.+...+..+..++...|++++|...|+++. +.+...+..+...|...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 77777777 7888888888777654 3456677788888888888888888888765 33456777788888889999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-------cccChhHHHHHHHHHhccCCHHH
Q 047120 431 ELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK-------LEPELQHYGCMVDILGRAGHIEA 503 (634)
Q Consensus 431 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~ 503 (634)
++|...+++..+.. +.+...+..+...+...|++++|...++.+.+... .+.....+..++..|.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999888752 23466888888889999999999999988876321 12335678889999999999999
Q ss_pred HHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH-hcCCCch
Q 047120 504 ARNLIEDM-PM-EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF-AGLGMWN 568 (634)
Q Consensus 504 A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 568 (634)
|.+.++++ .. +.+...+..+...+...|++++|...++++++.+|.++..+..++.++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999887 32 335678888888999999999999999999999999999999999988 4556553
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=3.9e-18 Score=169.90 Aligned_cols=279 Identities=13% Similarity=0.029 Sum_probs=213.6
Q ss_pred HHcCChHHHHH-HhhhCCC-----C--ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCC
Q 047120 292 AKLGRVDIARR-LFDEMPK-----R--DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGH 363 (634)
Q Consensus 292 ~~~g~~~~A~~-~~~~~~~-----~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 363 (634)
...|++++|.. .|++..+ | +...+..+...+...|++++|+..|+++... .+.+...+..+...+...|+
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcC
Confidence 34467777777 6665442 1 3456777888888888888888888888754 13345677777888888888
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCC---ChhHHHH---------------HHHHHH
Q 047120 364 IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG---SVDHWNA---------------MINGLA 425 (634)
Q Consensus 364 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~---------------li~~~~ 425 (634)
+++|...++.+.+.. +.+..++..+..+|...|++++|...++++... +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 888888888887764 446777888888888888888888888876522 2222211 233344
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHH
Q 047120 426 IHGLGELAFDLLMEMERLSIEPD---DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIE 502 (634)
Q Consensus 426 ~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 502 (634)
..|++++|...++++.+. .|+ ..++..+...+...|++++|...++.+.+. .+.+...+..++..|.+.|+++
T Consensus 193 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHH
Confidence 889999999999999875 444 678999999999999999999999999874 1335678999999999999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-----------CchHHHHHHHHhcCCCchH
Q 047120 503 AARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN-----------SSSYVLLSNMFAGLGMWND 569 (634)
Q Consensus 503 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~ 569 (634)
+|.+.++++ ...| +..++..+...+...|++++|...++++++..|.+ +..|..++.+|...|++++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 999999987 3334 57789999999999999999999999999998877 7899999999999999999
Q ss_pred HHHHHHHH
Q 047120 570 ARRVRSMM 577 (634)
Q Consensus 570 A~~~~~~~ 577 (634)
|..++++.
T Consensus 349 A~~~~~~~ 356 (368)
T 1fch_A 349 YGAADARD 356 (368)
T ss_dssp HHHHHTTC
T ss_pred HHHhHHHH
Confidence 99988643
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=2e-17 Score=161.99 Aligned_cols=266 Identities=11% Similarity=0.040 Sum_probs=229.3
Q ss_pred CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 047120 310 RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVAL 389 (634)
Q Consensus 310 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 389 (634)
.+...+..++..+...|++++|+++|+++.... +.+...+..++..+...|++++|...++.+.+.. +.+...+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 466778888999999999999999999998652 2344566677788899999999999999998864 4567888999
Q ss_pred HHHhHhcC-CHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 047120 390 IDMYSKCG-SIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLV 465 (634)
Q Consensus 390 ~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 465 (634)
...+...| ++++|...|+++.. .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998763 356789999999999999999999999998853 22356777899999999999
Q ss_pred HHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCChh
Q 047120 466 KEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PM----------EPNDVIWRTLLSACRNYENLN 534 (634)
Q Consensus 466 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~g~~~ 534 (634)
++|...++.+.+. .+.+...+..++..+.+.|++++|...++++ .. +.+..++..+...+...|+++
T Consensus 176 ~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999873 2445678999999999999999999999877 11 334678999999999999999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 535 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
+|...++++++..|.++..+..++.+|.+.|++++|.+.++++.+..
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999886553
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=2.3e-16 Score=163.36 Aligned_cols=375 Identities=10% Similarity=-0.005 Sum_probs=270.1
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHh----CCChHHHHHHHh
Q 047120 139 LQIHGLLRKVAFGSDLFLQNCLISLYVR----CGYLEFARQLFDKMGI-RDSVSYNSMIDGYVK----SGNIESARELFD 209 (634)
Q Consensus 139 ~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 209 (634)
...+....+.| ++..+..+...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|++.|+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 34444444433 55666666666666 6777777777766543 355566666666666 667777777776
Q ss_pred hCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHh----cCChHHHHHHHhhCCC-CChhHH
Q 047120 210 SMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVK----CGKMDDAQALFDKMPK-RDVVSW 284 (634)
Q Consensus 210 ~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~ 284 (634)
+.... .+ +..+..+...|.. .+++++|...|++..+ .+...+
T Consensus 104 ~a~~~-~~--------------------------------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 150 (490)
T 2xm6_A 104 KAALK-GL--------------------------------PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQ 150 (490)
T ss_dssp HHHHT-TC--------------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHC-CC--------------------------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 65442 12 2233333444444 4556666666655443 345566
Q ss_pred HHHHHHHHH----cCChHHHHHHhhhCCC-CChhhHHHHHHHHHH----cCCchHHHHHHHHHHhcCCCCCCHhHHHHHH
Q 047120 285 ANMIDGYAK----LGRVDIARRLFDEMPK-RDVVACNAMMGGYVR----NGYSMKALEIFDNMQCELYLHPDDASLVIVL 355 (634)
Q Consensus 285 ~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll 355 (634)
..|...|.. .++.++|...|++..+ .+...+..+...|.. .++.++|+.+|++.... .+...+..+.
T Consensus 151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg 226 (490)
T 2xm6_A 151 QSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----GDELGQLHLA 226 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHH
Confidence 667777766 6778888887776553 466777788888887 78888999999888755 2455666666
Q ss_pred HHHHc----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh----cCCHHHHHHHHHhccC-CChhHHHHHHHHHHH
Q 047120 356 SAIAQ----LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK----CGSIENAIKVFEQIED-GSVDHWNAMINGLAI 426 (634)
Q Consensus 356 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~ 426 (634)
..+.. .++.++|..+++...+.+ ++..+..+..+|.. .+++++|+..|++..+ .++..+..+...|..
T Consensus 227 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~ 303 (490)
T 2xm6_A 227 DMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDK 303 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Confidence 66664 788899999998888764 45566677777777 8899999999988764 466778888888888
Q ss_pred c-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc-
Q 047120 427 H-----GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAG---LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR- 497 (634)
Q Consensus 427 ~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 497 (634)
. +++++|+..|++..+.| +...+..+...+...| ++++|.++|+++.+. .+...+..|...|..
T Consensus 304 ~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g 376 (490)
T 2xm6_A 304 GAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQG 376 (490)
T ss_dssp CBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHT
T ss_pred CCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcC
Confidence 7 89999999999998864 4566777777777656 889999999999872 356778888888888
Q ss_pred ---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCC---CCchHHHHHHHHhc
Q 047120 498 ---AGHIEAARNLIEDMPMEPNDVIWRTLLSACRN----YENLNVGEPVAKHLIGMDSS---NSSSYVLLSNMFAG 563 (634)
Q Consensus 498 ---~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 563 (634)
.+++++|.+.+++.-...+...+..|...|.. .+++++|...|+++.+.+|. ++.....++.++..
T Consensus 377 ~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 377 KGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 89999999999987323467788888888887 89999999999999999854 66777777776654
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1.8e-17 Score=161.17 Aligned_cols=237 Identities=14% Similarity=0.129 Sum_probs=89.2
Q ss_pred cCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHH
Q 047120 58 SSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEE 137 (634)
Q Consensus 58 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 137 (634)
+.|+. ++|.++++++. .| .+|..+..++.+.|++++|++.|.+ .+|..+|..++.++...|++++
T Consensus 15 ~~~~l---d~A~~fae~~~----~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 15 HIGNL---DRAYEFAERCN----EP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCH---HHHHHHHHhCC----Ch--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHH
Confidence 56667 99999999984 33 4899999999999999999999965 2678899999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCC
Q 047120 138 GLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERN 217 (634)
Q Consensus 138 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~ 217 (634)
|..+++..++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.++..|...|.+++|...|..+
T Consensus 80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp -------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT------
T ss_pred HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 99988877774 45678899999999999999999888863 67789999999999999999999999987
Q ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCCh
Q 047120 218 LISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRV 297 (634)
Q Consensus 218 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 297 (634)
..|..+..++.+.|+ ++.|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++
T Consensus 149 -~n~~~LA~~L~~Lg~-yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 149 -SNFGRLASTLVHLGE-YQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp -TCHHHHHHHHHTTTC-HHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred -hhHHHHHHHHHHhcc-HHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 357788888888888 88888887777 367777777777777777777766666544 3333344566667777777
Q ss_pred HHHHHHhhhCCC---CChhhHHHHHHHHHHc
Q 047120 298 DIARRLFDEMPK---RDVVACNAMMGGYVRN 325 (634)
Q Consensus 298 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 325 (634)
++|..+++.... .....|+.+.-.|++-
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 777777666553 2334555555555544
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=1.2e-15 Score=159.83 Aligned_cols=413 Identities=10% Similarity=0.042 Sum_probs=279.1
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCCh
Q 047120 142 HGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI--R-DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNL 218 (634)
Q Consensus 142 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~ 218 (634)
++..++.. +-+...|..++. +.+.|++++|..+|+++.. | +...|..++..+.+.|++++|.++|+++....|+.
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~ 79 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHI 79 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCH
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Confidence 34444443 336778888888 4778999999999998864 3 56689999999999999999999999999888887
Q ss_pred hHHHHHHHHHH-hcCCcHHHHH----HHHhhCCC------CCchHHHHHHHHHHh---------cCChHHHHHHHhhCCC
Q 047120 219 ISWNSVLNGYA-QLKSGLQFAW----QIFEKMPE------RDLISWNSMLHGCVK---------CGKMDDAQALFDKMPK 278 (634)
Q Consensus 219 ~~~~~ll~~~~-~~~~~~~~a~----~~~~~~~~------~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~ 278 (634)
..|...+.... ..++ .+.|. .+|++... ++...|...+....+ .|+++.|..+|++..+
T Consensus 80 ~lw~~~~~~~~~~~~~-~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGK-LPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHTTT-STTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccc-hhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 77776665332 2333 44443 35554421 234556555554443 5667777777766654
Q ss_pred -CCh---hHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHH------Hhc--CCCCC
Q 047120 279 -RDV---VSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM------QCE--LYLHP 346 (634)
Q Consensus 279 -~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m------~~~--~~~~p 346 (634)
|.. ..|..........|. ..+..++. ...+++..|..+++.. ... ..+.|
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred chhhhHHHHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 221 122221111100110 01111111 0223455666655542 111 01234
Q ss_pred CH--------hHHHHHHHHHHc----cCCh----HHHHHHHHHHHHcCCCCchhHHHHHHHHhHh-------cCCHH---
Q 047120 347 DD--------ASLVIVLSAIAQ----LGHI----DKGVAIHRYLEKDQFSLNGKHGVALIDMYSK-------CGSIE--- 400 (634)
Q Consensus 347 ~~--------~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~--- 400 (634)
+. ..|...+..... .++. +.+..+|++++... +.++..|..++..+.+ .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 31 234333332221 1233 36777888887753 5577888888888875 68876
Q ss_pred ----HHHHHHHhccC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHH
Q 047120 401 ----NAIKVFEQIED---G-SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD--ITFTGLLNACAHAGLVKEGLL 470 (634)
Q Consensus 401 ----~A~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~ 470 (634)
+|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|..
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 89999998763 3 5678999999999999999999999999984 5653 478888888889999999999
Q ss_pred HHHHhHHhcCccc-ChhHHHHHHHH-HhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047120 471 CFELMRRIHKLEP-ELQHYGCMVDI-LGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546 (634)
Q Consensus 471 ~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 546 (634)
+|+.+.+. .| +...|...+.. +...|++++|.++|++. ...| +...|..++..+.+.|+.++|..+|+++++.
T Consensus 378 ~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 378 IFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 99999873 23 23333332222 34689999999999987 3334 5788999999999999999999999999999
Q ss_pred CCCCCc----hHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120 547 DSSNSS----SYVLLSNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 547 ~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
.|.+|. .|..++......|+.+.+..+.+++.+.-
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 877766 78888888888999999999999986653
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=1.2e-15 Score=157.98 Aligned_cols=318 Identities=10% Similarity=-0.055 Sum_probs=262.9
Q ss_pred CchHHHHHHHHHHh----cCChHHHHHHHhhCCC-CChhHHHHHHHHHHH----cCChHHHHHHhhhCCC-CChhhHHHH
Q 047120 249 DLISWNSMLHGCVK----CGKMDDAQALFDKMPK-RDVVSWANMIDGYAK----LGRVDIARRLFDEMPK-RDVVACNAM 318 (634)
Q Consensus 249 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l 318 (634)
+...+..+...|.. .+++++|.+.|++..+ .+...+..|...|.. .+++++|...|++..+ .++..+..+
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~L 153 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSM 153 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 33444555556666 6778888888877654 467788889999988 8899999999998765 466788888
Q ss_pred HHHHHH----cCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047120 319 MGGYVR----NGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ----LGHIDKGVAIHRYLEKDQFSLNGKHGVALI 390 (634)
Q Consensus 319 ~~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 390 (634)
...|.. .++.++|++.|++..+. + +...+..+...+.. .++.++|...++...+.+ ++..+..+.
T Consensus 154 g~~y~~g~g~~~d~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 226 (490)
T 2xm6_A 154 GDAYFEGDGVTRDYVMAREWYSKAAEQ-G---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLA 226 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 888887 78999999999999865 2 56777788888877 899999999999999875 566777888
Q ss_pred HHhHh----cCCHHHHHHHHHhccC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 047120 391 DMYSK----CGSIENAIKVFEQIED-GSVDHWNAMINGLAI----HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461 (634)
Q Consensus 391 ~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 461 (634)
.+|.. .+++++|...|++..+ .++..+..+...|.. .++.++|+..|++..+.| +...+..+...+..
T Consensus 227 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 303 (490)
T 2xm6_A 227 DMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDK 303 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc
Confidence 88886 8899999999998764 467788888888888 899999999999998764 55677777777777
Q ss_pred c-----CCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 047120 462 A-----GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG---HIEAARNLIEDMPMEPNDVIWRTLLSACRN---- 529 (634)
Q Consensus 462 ~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~---- 529 (634)
. +++++|...++.+.+ . .+...+..+...|.+.| ++++|++.+++.-...+...+..|...|..
T Consensus 304 ~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~ 379 (490)
T 2xm6_A 304 GAEGVAKNREQAISWYTKSAE-Q---GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGV 379 (490)
T ss_dssp CBTTBCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred CCCCCcCCHHHHHHHHHHHHh-c---CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 6 899999999999987 2 34567778888888767 889999999988323578888899999988
Q ss_pred cCChhHHHHHHHHHhccCCCCCchHHHHHHHHhc----CCCchHHHHHHHHHHhCCC
Q 047120 530 YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG----LGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 582 (634)
.+++++|...++++.+.+ ++..+..|+.+|.. .+++++|...+++..+.+.
T Consensus 380 ~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 380 KKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 899999999999999875 57899999999998 8999999999999988773
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=8.9e-16 Score=160.69 Aligned_cols=415 Identities=11% Similarity=0.035 Sum_probs=287.1
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC
Q 047120 107 FCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI--RD 184 (634)
Q Consensus 107 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~ 184 (634)
|++.++.. +-+...|..++.. .+.|++++|..+|+++++.- +.+...|..++..+.+.|++++|.++|++... |+
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~ 78 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH 78 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence 44555422 2355578888884 77899999999999999863 44677899999999999999999999999864 67
Q ss_pred hhHHHHHHHHH-HhCCChHHHHH----HHhhCccC----CCChhHHHHHHHHHHh---------cCCcHHHHHHHHhhCC
Q 047120 185 SVSYNSMIDGY-VKSGNIESARE----LFDSMPIR----ERNLISWNSVLNGYAQ---------LKSGLQFAWQIFEKMP 246 (634)
Q Consensus 185 ~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~~----~p~~~~~~~ll~~~~~---------~~~~~~~a~~~~~~~~ 246 (634)
...|...+... ...|+.++|.+ +|++.... .++...|...+..... .++ ++.|..+|++..
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~a~~~y~~al 157 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQR-ITAVRRVYQRGC 157 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHH-HHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhH-HHHHHHHHHHHH
Confidence 77777777533 45677777665 66665432 2345667666665543 456 999999999988
Q ss_pred C-CCc---hHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhh-------CC------C
Q 047120 247 E-RDL---ISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDE-------MP------K 309 (634)
Q Consensus 247 ~-~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~------~ 309 (634)
. |+. ..|..........|. ..+..++.. +.++++.|..++.. +. .
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 219 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVP 219 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred hchhhhHHHHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 7 432 222222221111111 111111111 12334444433332 11 1
Q ss_pred CC--------hhhHHHHHHHHHHc----CCc----hHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHc-------cCChH-
Q 047120 310 RD--------VVACNAMMGGYVRN----GYS----MKALEIFDNMQCELYLHPDDASLVIVLSAIAQ-------LGHID- 365 (634)
Q Consensus 310 ~~--------~~~~~~l~~~~~~~----g~~----~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-------~~~~~- 365 (634)
|+ ...|...+...... ++. .+++.+|++.... .+-+...|......+.+ .|+++
T Consensus 220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~ 297 (530)
T 2ooe_A 220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNN 297 (530)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhh
Confidence 11 23555555433322 232 3778899988865 22345667766666654 68887
Q ss_pred ------HHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc--CC-Ch-hHHHHHHHHHHHcCChHHHHH
Q 047120 366 ------KGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE--DG-SV-DHWNAMINGLAIHGLGELAFD 435 (634)
Q Consensus 366 ------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~-~~~~~li~~~~~~~~~~~A~~ 435 (634)
+|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++. .| +. ..|..++..+.+.|+.++|.+
T Consensus 298 a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 298 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 889999988863345568889999999999999999999999876 23 33 479999999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC--
Q 047120 436 LLMEMERLSIEPD-DITFTGLLNA-CAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-- 511 (634)
Q Consensus 436 ~~~~m~~~g~~p~-~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 511 (634)
+|++..+. .|+ ...|...+.. +...|++++|..+|+.+.+.. +.+...|..++..+.+.|+.++|..+|+++
T Consensus 378 ~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 378 IFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 99999875 333 3333333222 335899999999999998742 335778999999999999999999999987
Q ss_pred --CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120 512 --PMEPN--DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549 (634)
Q Consensus 512 --~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (634)
+..|+ ...|...+......|+.+.+..+.+++.+..|.
T Consensus 454 ~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 454 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 22333 448888888888899999999999999998874
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=2e-17 Score=164.65 Aligned_cols=261 Identities=11% Similarity=0.001 Sum_probs=207.9
Q ss_pred ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047120 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI 390 (634)
Q Consensus 311 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 390 (634)
+...|..+...+.+.|++++|+.+|+++... .+.+...+..+...+...|++++|...++.+.+.. +.+...+..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 4456888888888889999999999888854 13356778888888888899999999988888764 44577888888
Q ss_pred HHhHhcCCHHHHHHHHHhccCCC-------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 047120 391 DMYSKCGSIENAIKVFEQIEDGS-------------VDHWNAMINGLAIHGLGELAFDLLMEMERLSIE-PDDITFTGLL 456 (634)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll 456 (634)
.+|...|++++|+..|+++.+.+ ...+..+...+...|++++|...++++.+.... ++..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 89999999999999988876322 123344578889999999999999999986322 1577899999
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChh
Q 047120 457 NACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLN 534 (634)
Q Consensus 457 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 534 (634)
..+...|++++|...++.+.+.. +.+..+|..++.+|.+.|++++|++.++++ ...|+ ..++..+...|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999998742 345778999999999999999999999987 43454 788999999999999999
Q ss_pred HHHHHHHHHhccCCC------------CCchHHHHHHHHhcCCCchHHHHHHHH
Q 047120 535 VGEPVAKHLIGMDSS------------NSSSYVLLSNMFAGLGMWNDARRVRSM 576 (634)
Q Consensus 535 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 576 (634)
+|...+++++++.|. +...|..++.++...|+.+.+..+.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999998866 367899999999999999988887754
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=4.6e-17 Score=162.14 Aligned_cols=277 Identities=14% Similarity=0.044 Sum_probs=205.1
Q ss_pred CChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHH-HHHHHHhcCCCCC--CHhHHHHHHHHHHccCChHHHHHHH
Q 047120 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE-IFDNMQCELYLHP--DDASLVIVLSAIAQLGHIDKGVAIH 371 (634)
Q Consensus 295 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~ 371 (634)
+.++.+...|+.+...+.. ++...|++++|++ .|++......-.| +...+..+...+...|++++|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444455555555443322 3445688999998 8887763311222 2456778889999999999999999
Q ss_pred HHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 047120 372 RYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD 448 (634)
Q Consensus 372 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 448 (634)
+.+.+.. +.+...+..+..++...|++++|...|+++. +.+..++..+...|...|++++|...++++... .|+
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 164 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPA 164 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcC
Confidence 9999874 5577889999999999999999999999876 457789999999999999999999999999986 343
Q ss_pred HH-HHHH---------------HHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-
Q 047120 449 DI-TFTG---------------LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM- 511 (634)
Q Consensus 449 ~~-~~~~---------------ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 511 (634)
.. .+.. .+..+...|++++|...++.+.+.....++..++..++..|.+.|++++|++.++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 2211 233344899999999999999884322225778999999999999999999999987
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120 512 PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 512 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
...| +..+|..++..+...|++++|+..++++++..|.++..+..++.+|.+.|++++|...++++.+..
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3334 578999999999999999999999999999999999999999999999999999999999997653
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=1.2e-16 Score=155.33 Aligned_cols=349 Identities=12% Similarity=0.047 Sum_probs=122.4
Q ss_pred hcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhC
Q 047120 166 RCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKM 245 (634)
Q Consensus 166 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 245 (634)
+.|++++|.++++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|+ +++|...++..
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~-~EeAi~yl~~a 87 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGN-WEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 567788888888888554 48888888888888888888888653 455566666666555555 55555544444
Q ss_pred CC--CCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHH
Q 047120 246 PE--RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYV 323 (634)
Q Consensus 246 ~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 323 (634)
.+ +++.+. +.++.+|.+.|+++++.++++ .|+..+|+.++..|.
T Consensus 88 rk~~~~~~i~-------------------------------~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~ 133 (449)
T 1b89_A 88 RKKARESYVE-------------------------------TELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCY 133 (449)
T ss_dssp ----------------------------------------------------CHHHHTTTTT---CC-------------
T ss_pred HHhCccchhH-------------------------------HHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHH
Confidence 33 233444 444444444454444444443 234445555555555
Q ss_pred HcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 047120 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAI 403 (634)
Q Consensus 324 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 403 (634)
..|.+++|..+|..+ ..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|.
T Consensus 134 ~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 134 DEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp ---CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHH
Confidence 555555555555543 13445555555555555555555444 14455555555555555555554
Q ss_pred HHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh--ccCCHHHHHHHHHHhHHhcC
Q 047120 404 KVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACA--HAGLVKEGLLCFELMRRIHK 480 (634)
Q Consensus 404 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~ 480 (634)
.....+. ..+.....++..|.+.|++++|+.+++..... .+- ...|+-+.-+++ +.+++.+.++.|..- -+
T Consensus 198 ~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---in 271 (449)
T 1b89_A 198 MCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VN 271 (449)
T ss_dssp HTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SC
T ss_pred HHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hc
Confidence 4444333 23333445666667777777777777766633 332 334444444443 344555555554422 23
Q ss_pred ccc------ChhHHHHHHHHHhccCCHHHHHHHHHhC-CC-------------CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 047120 481 LEP------ELQHYGCMVDILGRAGHIEAARNLIEDM-PM-------------EPNDVIWRTLLSACRNYENLNVGEPVA 540 (634)
Q Consensus 481 ~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------------~p~~~~~~~l~~~~~~~g~~~~a~~~~ 540 (634)
++| +...|..++-.|...++++.|....-+- +. ..+...|...+..|. +....+..-+
T Consensus 272 i~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~l 349 (449)
T 1b89_A 272 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDL 349 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHH
Confidence 344 4667888888888888888887765554 22 122333433444433 2222223323
Q ss_pred HHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCc
Q 047120 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583 (634)
Q Consensus 541 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (634)
..++.- .--....+..+.+.|.+.-+..+++.+.+.+.+
T Consensus 350 l~~l~~----~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n~~ 388 (449)
T 1b89_A 350 LMVLSP----RLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNK 388 (449)
T ss_dssp HHHHGG----GCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCH
T ss_pred HHHHHh----ccCcHHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 232200 011244555566666666666666666655543
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=5.9e-16 Score=147.69 Aligned_cols=267 Identities=12% Similarity=0.037 Sum_probs=193.9
Q ss_pred HHHcCChHHHHHHhhhCCCCCh----hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHH
Q 047120 291 YAKLGRVDIARRLFDEMPKRDV----VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366 (634)
Q Consensus 291 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 366 (634)
....|++..|+..++.....++ .....+.++|...|+++.|+..++.. -.|+..++..+...+...++.++
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCCcHHH
Confidence 3445666666666666554322 23344566777777777777655431 24555666777777777777788
Q ss_pred HHHHHHHHHHcCC-CCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 047120 367 GVAIHRYLEKDQF-SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445 (634)
Q Consensus 367 a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 445 (634)
|++.++.+...+. +.++..+..+..++...|++++|++.+++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 8887777776654 33556667777888899999999999988 567778888999999999999999999999876
Q ss_pred CCCHHHH---HHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHH
Q 047120 446 EPDDITF---TGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIW 520 (634)
Q Consensus 446 ~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 520 (634)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++ ...| +..++
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4664311 12334445668999999999999874 3456778899999999999999999999987 4344 57788
Q ss_pred HHHHHHHHhcCChhH-HHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHH
Q 047120 521 RTLLSACRNYENLNV-GEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARR 572 (634)
Q Consensus 521 ~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 572 (634)
..++..+...|+.++ +.++++++++.+|.++.+.. ...+.+.++++..
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHH
Confidence 889988888998875 57899999999999886543 4444455555444
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=2.3e-16 Score=150.55 Aligned_cols=248 Identities=9% Similarity=0.026 Sum_probs=205.8
Q ss_pred HHHHHHcCCchHHHHHHHHHHhcCCCCCCH--hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047120 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDD--ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC 396 (634)
Q Consensus 319 ~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 396 (634)
++.....|++..|+..++... ...|+. .....+..++...|+++.|...++. .-+|+...+..+...+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~---~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVK---PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSC---CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcc---cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence 456678899999999998876 445654 3556678899999999999986644 2456778888899999999
Q ss_pred CCHHHHHHHHHhcc----CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 047120 397 GSIENAIKVFEQIE----DG-SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC 471 (634)
Q Consensus 397 ~~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 471 (634)
++.++|++.++++. .| +...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999864 13 566788888999999999999999987 34677899999999999999999999
Q ss_pred HHHhHHhcCcccChhH---HHHHHHHHhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047120 472 FELMRRIHKLEPELQH---YGCMVDILGRAGHIEAARNLIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546 (634)
Q Consensus 472 ~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 546 (634)
++.+.+. .|+... ...++..+...|++++|..+|+++ ..+.+...++.+..++.+.|++++|+..++++++.
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999874 355321 123445555679999999999998 34566889999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhcCCCchH-HHHHHHHHHhCCC
Q 047120 547 DSSNSSSYVLLSNMFAGLGMWND-ARRVRSMMKERNL 582 (634)
Q Consensus 547 ~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~ 582 (634)
+|.++.++..++.++...|+.++ +.++++++.+...
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999986 5789998876544
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=5.8e-16 Score=159.88 Aligned_cols=369 Identities=13% Similarity=0.012 Sum_probs=209.5
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC-CCchHHHHHHHHHHh
Q 047120 184 DSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE-RDLISWNSMLHGCVK 262 (634)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~ 262 (634)
....||.|...+...|++++|++.|++..+. .......-.. ....+|+.+..+|..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~-----------------------~~~~~~~~~~~~~~~~~~nla~~y~~ 106 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEEL-----------------------IQQEHADQAEIRSLVTWGNYAWVYYH 106 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------HHHHSGGGCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------------------HHhcCccccchHHHHHHHHHHHHHHH
Confidence 3457888889999999999999888766431 0000000000 122344445555555
Q ss_pred cCChHHHHHHHhhCCC-----------CChhHHHHHHHHHHHc--CChHHHHHHhhhCCC--C-ChhhHHHHHHH---HH
Q 047120 263 CGKMDDAQALFDKMPK-----------RDVVSWANMIDGYAKL--GRVDIARRLFDEMPK--R-DVVACNAMMGG---YV 323 (634)
Q Consensus 263 ~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~~ 323 (634)
.|++++|...+++..+ ....++..+..++.+. +++++|...|++..+ | ++..+..+..+ +.
T Consensus 107 ~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~ 186 (472)
T 4g1t_A 107 MGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD 186 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 5555555555444321 1234455454444443 346777777766543 2 33344444333 33
Q ss_pred HcCCchHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHH----ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCC
Q 047120 324 RNGYSMKALEIFDNMQCELYLHPD-DASLVIVLSAIA----QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS 398 (634)
Q Consensus 324 ~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 398 (634)
..++.++|++.+++.... .|+ ...+..+...+. ..++.++|...++...+.. +.+..++..+...|...|+
T Consensus 187 ~~~~~~~al~~~~~al~l---~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 262 (472)
T 4g1t_A 187 NWPPSQNAIDPLRQAIRL---NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDE 262 (472)
T ss_dssp HSCCCCCTHHHHHHHHHH---CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHHhhc---CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCc
Confidence 456667777777777643 343 334444433333 3356667777777766653 4455667777777777777
Q ss_pred HHHHHHHHHhcc---CCChhHHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 047120 399 IENAIKVFEQIE---DGSVDHWNAMINGLAI-------------------HGLGELAFDLLMEMERLSIEPD-DITFTGL 455 (634)
Q Consensus 399 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~-------------------~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l 455 (634)
+++|...++++. +.+..++..+..+|.. .+..+.|...+++..+. .|+ ..++..+
T Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l 340 (472)
T 4g1t_A 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSIL 340 (472)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHH
T ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhH
Confidence 777777777665 2344455555555432 22356788888887764 344 4577788
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCcccCh--hHHHHHHH-HHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcC
Q 047120 456 LNACAHAGLVKEGLLCFELMRRIHKLEPEL--QHYGCMVD-ILGRAGHIEAARNLIEDM-PMEPNDVIWRTLLSACRNYE 531 (634)
Q Consensus 456 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g 531 (634)
...+...|++++|...|+++... ...+.. ..+..+.. .+...|++++|+..+++. .+.|+.......
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~-------- 411 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM-------- 411 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH--------
T ss_pred HHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH--------
Confidence 88899999999999999988763 222211 12333333 245788999999999887 566765433322
Q ss_pred ChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCccCCceeEE
Q 047120 532 NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWI 591 (634)
Q Consensus 532 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 591 (634)
...+.+++++.++.+|.++.+|..++.+|...|++++|++.+++..+.+.......+|+
T Consensus 412 -~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 412 -KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp -HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 34456778888899999999999999999999999999999999988765432233443
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=1.1e-16 Score=156.41 Aligned_cols=259 Identities=7% Similarity=-0.087 Sum_probs=197.5
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047120 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDM 392 (634)
Q Consensus 313 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 392 (634)
..+..+...+...|++++|+.+|+++... .+.+...+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 44566666777777777777777777644 12244566666677777777777777777776653 3456667777777
Q ss_pred hHhcCCHHHHHHHHHhccCC---ChhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 047120 393 YSKCGSIENAIKVFEQIEDG---SVDHWNAM--------------IN-GLAIHGLGELAFDLLMEMERLSIEPDDITFTG 454 (634)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 454 (634)
+...|++++|...++++... +...+..+ .. .+...|++++|...++++.+.. +.+...+..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 77777777777777766521 22223222 22 3677888999999999998753 235778899
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCC
Q 047120 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PME-PNDVIWRTLLSACRNYEN 532 (634)
Q Consensus 455 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~ 532 (634)
+...+...|++++|...++.+.+.. +.+...+..++..+...|++++|.+.++++ ... .+..++..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998732 345678899999999999999999999987 333 457789999999999999
Q ss_pred hhHHHHHHHHHhccCCC------------CCchHHHHHHHHhcCCCchHHHHHHHHH
Q 047120 533 LNVGEPVAKHLIGMDSS------------NSSSYVLLSNMFAGLGMWNDARRVRSMM 577 (634)
Q Consensus 533 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 577 (634)
+++|...++++++..|. ++..+..++.++.+.|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999998 7889999999999999999999998754
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=2.6e-16 Score=156.55 Aligned_cols=232 Identities=8% Similarity=-0.040 Sum_probs=195.9
Q ss_pred CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHH
Q 047120 347 DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMING 423 (634)
Q Consensus 347 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~ 423 (634)
+...+..+...+.+.|++++|..+++.+.+.. +.+...+..+..+|...|++++|+..|+++. +.+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34458888899999999999999999999875 5578899999999999999999999999886 3467899999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHH
Q 047120 424 LAIHGLGELAFDLLMEMERLSIEPDD-----------ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMV 492 (634)
Q Consensus 424 ~~~~~~~~~A~~~~~~m~~~g~~p~~-----------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 492 (634)
|...|++++|+..++++.+. .|+. ..+..+...+...|++++|..+++.+.+.....++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999874 3442 2233457889999999999999999988533222578899999
Q ss_pred HHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHH
Q 047120 493 DILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDA 570 (634)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 570 (634)
..|.+.|++++|++.++++ .. +.+..+|..++.+|...|++++|+..++++++..|.++..+..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999997 33 345789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 047120 571 RRVRSMMKERN 581 (634)
Q Consensus 571 ~~~~~~~~~~~ 581 (634)
...++++.+..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999997654
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=9.7e-15 Score=150.67 Aligned_cols=342 Identities=10% Similarity=-0.060 Sum_probs=172.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHhhCccC--------CCC-hhHHHHHHHHHHhcC-CcHHHHHHHHhhCCC--CC-chH
Q 047120 186 VSYNSMIDGYVKSGNIESARELFDSMPIR--------ERN-LISWNSVLNGYAQLK-SGLQFAWQIFEKMPE--RD-LIS 252 (634)
Q Consensus 186 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~p~-~~~~~~ll~~~~~~~-~~~~~a~~~~~~~~~--~~-~~~ 252 (634)
.+|+.+..+|...|++++|...+++.... .++ ..++.....++...+ +..++|...|++..+ |+ +..
T Consensus 95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~ 174 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF 174 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHH
Confidence 35555555555566666655555544321 122 234444444443332 227788888877655 33 333
Q ss_pred HHHHHHH---HHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHH----cCChHHHHHHhhhCCC---CChhhHHHHH
Q 047120 253 WNSMLHG---CVKCGKMDDAQALFDKMPK---RDVVSWANMIDGYAK----LGRVDIARRLFDEMPK---RDVVACNAMM 319 (634)
Q Consensus 253 ~~~l~~~---~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~l~ 319 (634)
+..+..+ +...++.++|++.+++..+ .+..++..+...+.. .|+.++|.+.+++... .+..++..+.
T Consensus 175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg 254 (472)
T 4g1t_A 175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAA 254 (472)
T ss_dssp HHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 3333333 3344666666666665542 334444444444333 3455666666665432 3445666666
Q ss_pred HHHHHcCCchHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCC
Q 047120 320 GGYVRNGYSMKALEIFDNMQCELYLHPD-DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS 398 (634)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 398 (634)
..|...|++++|+..+++..+. .|+ ...+..+...+...+... .... . ..........+.
T Consensus 255 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~y~~~~~~~---------~~~~-~------~~~~~~~~~~~~ 315 (472)
T 4g1t_A 255 KFYRRKDEPDKAIELLKKALEY---IPNNAYLHCQIGCCYRAKVFQV---------MNLR-E------NGMYGKRKLLEL 315 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHH
T ss_pred HHHHHcCchHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHHh---------hhHH-H------HHHHHHHHHHhh
Confidence 6777777777777777766643 343 233433333332111000 0000 0 000001111233
Q ss_pred HHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCCHHHHHHHH
Q 047120 399 IENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDI--TFTGLLN-ACAHAGLVKEGLLCF 472 (634)
Q Consensus 399 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~ 472 (634)
++.|...+++.. ..+...+..+...|...|++++|+..|++..+....|... .+..+.. .....|++++|+..|
T Consensus 316 ~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y 395 (472)
T 4g1t_A 316 IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHF 395 (472)
T ss_dssp HHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 567777777665 3456688999999999999999999999998864333221 2333332 345789999999999
Q ss_pred HHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047120 473 ELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-P-MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550 (634)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (634)
+++.+. .|+....... ...+.+++++. . .+.+..+|..+...+...|++++|++.|+++++.+|.+
T Consensus 396 ~kal~i---~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 396 IEGVKI---NQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp HHHHHS---CCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHhc---CcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 998773 4543322222 22333444443 2 23457789999999999999999999999999999999
Q ss_pred CchHHHHH
Q 047120 551 SSSYVLLS 558 (634)
Q Consensus 551 ~~~~~~l~ 558 (634)
|.++..+|
T Consensus 464 p~a~~~~G 471 (472)
T 4g1t_A 464 PSASSWNG 471 (472)
T ss_dssp --------
T ss_pred CcHhhcCC
Confidence 88777665
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=2.1e-17 Score=173.23 Aligned_cols=154 Identities=14% Similarity=0.110 Sum_probs=127.5
Q ss_pred CCchhhhhHHHHHhhcCCCCCCHHHHHHHHHhcc---ccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCc
Q 047120 43 IKNTHLTTKLVASFSSSPCTPLTEFARYIFFKYH---AFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDK 119 (634)
Q Consensus 43 ~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 119 (634)
.--..+||+||.+|++.|++ ++|..+|++|. ..|..||++|||+||.+||+.|+.++|.++|++|.+.|+.||.
T Consensus 124 ~~~~~TynaLIdglcK~G~l---eeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv 200 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQL---PLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HhHHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH
Confidence 33446899999999999998 99999998875 3478999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhccCCh-HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----ChhHHHHHHH
Q 047120 120 FSASLVLKACSRLGLI-EEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIR-----DSVSYNSMID 193 (634)
Q Consensus 120 ~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~ 193 (634)
.||+++|.++++.|.. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++...+..+ ...+...|.+
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHH
Confidence 9999999999999985 789999999999999999999999998877765555555554444321 1233344555
Q ss_pred HHHhCC
Q 047120 194 GYVKSG 199 (634)
Q Consensus 194 ~~~~~g 199 (634)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555544
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=6.5e-15 Score=143.76 Aligned_cols=267 Identities=10% Similarity=0.017 Sum_probs=142.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHhhhCCC---CChhhHHHHHHHHHHcC
Q 047120 253 WNSMLHGCVKCGKMDDAQALFDKMPK---RDVVSWANMIDGYAKLGRVDIARRLFDEMPK---RDVVACNAMMGGYVRNG 326 (634)
Q Consensus 253 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g 326 (634)
+..+...+...|++++|..+|+++.+ .+...+..+...+...|++++|...|+++.+ .+..++..+...+...|
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 34445555556666666666555432 2344455555555555555555555554432 23444555555555555
Q ss_pred CchHHHHHHHHHHhcCCCCCCHh-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHH-HH-HhHhcCCHHHHH
Q 047120 327 YSMKALEIFDNMQCELYLHPDDA-SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVAL-ID-MYSKCGSIENAI 403 (634)
Q Consensus 327 ~~~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~A~ 403 (634)
++++|+..++++... .|+.. .+..+...+ ++......+ .. .+...|++++|.
T Consensus 104 ~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 104 NANAALASLRAWLLS---QPQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp CHHHHHHHHHHHHHT---STTTTTC------------------------------------------CCTTSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh---CCccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHHH
Confidence 555555555555532 22211 111110000 000000001 11 245556666666
Q ss_pred HHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 047120 404 KVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHK 480 (634)
Q Consensus 404 ~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 480 (634)
..++++. ..+...+..+...|...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 236 (327)
T 3cv0_A 159 TLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN- 236 (327)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 6666554 2345566666666666777777777776666541 2234566666667777777777777777666521
Q ss_pred cccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047120 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-------------NDVIWRTLLSACRNYENLNVGEPVAKHLIGM 546 (634)
Q Consensus 481 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 546 (634)
+.+...+..++..|.+.|++++|.+.++++ ...| +...|..+..++...|++++|..+++++++.
T Consensus 237 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 237 -PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred -CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 223556666777777777777777777665 2222 2556667777777777777777777666554
Q ss_pred C
Q 047120 547 D 547 (634)
Q Consensus 547 ~ 547 (634)
.
T Consensus 316 ~ 316 (327)
T 3cv0_A 316 F 316 (327)
T ss_dssp H
T ss_pred c
Confidence 3
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1e-14 Score=136.87 Aligned_cols=218 Identities=7% Similarity=-0.057 Sum_probs=156.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC--C-C-------hhHHHHH
Q 047120 351 LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED--G-S-------VDHWNAM 420 (634)
Q Consensus 351 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~-------~~~~~~l 420 (634)
+..+...+...|++++|..+++.+.+.. .+...+..+..++...|++++|...++++.+ | + ...|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3344444444555555555555544443 4444555555555555555555555555431 1 1 4567777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC
Q 047120 421 INGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500 (634)
Q Consensus 421 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 500 (634)
...|...|++++|...+++..+. .|+. ..+...|++++|...++.+... .+.+...+..++..+...|+
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888774 4553 3355667888888888888762 23345678888888999999
Q ss_pred HHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120 501 IEAARNLIEDM-P-MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578 (634)
Q Consensus 501 ~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 578 (634)
+++|.+.++++ . .+.+..+|..+...+...|++++|...++++++.+|.++..+..++.+|...|++++|.+.++++.
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999887 2 234577888889899999999999999999999999999999999999999999999999999886
Q ss_pred hCC
Q 047120 579 ERN 581 (634)
Q Consensus 579 ~~~ 581 (634)
+..
T Consensus 235 ~~~ 237 (258)
T 3uq3_A 235 TKD 237 (258)
T ss_dssp HHH
T ss_pred HhC
Confidence 654
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=4.7e-15 Score=135.06 Aligned_cols=194 Identities=13% Similarity=0.066 Sum_probs=153.6
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 047120 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGL 455 (634)
Q Consensus 380 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l 455 (634)
++++..+..+...+.+.|++++|+..|++..+ .++..|..+...+.+.|++++|+..+++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45666777788888888888888888887653 36678888889999999999999999998875 555 5688888
Q ss_pred HHHHhcc-----------CCHHHHHHHHHHhHHhcCccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHH
Q 047120 456 LNACAHA-----------GLVKEGLLCFELMRRIHKLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRT 522 (634)
Q Consensus 456 l~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 522 (634)
..++... |++++|+..++++.+. .| +...+..+..+|...|++++|++.|+++ ....+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8888888 9999999999999874 34 4677889999999999999999999987 22277889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578 (634)
Q Consensus 523 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 578 (634)
+..++...|++++|+..++++++.+|.++..+..++.++...|++++|++.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998653
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.9e-14 Score=135.01 Aligned_cols=236 Identities=11% Similarity=-0.014 Sum_probs=186.7
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCc----hhHH
Q 047120 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQF--SLN----GKHG 386 (634)
Q Consensus 313 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 386 (634)
..|..+...+...|++++|+..|+++... . .+...+..+...+...|++++|...++.+.+... .++ ...+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWEL-H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 45677778888888888888888888866 3 6677788888888888888888888888776421 111 5777
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCH
Q 047120 387 VALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLV 465 (634)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~ 465 (634)
..+..++...|++++|...|+++...++. ...+...|++++|...++++... .|+ ...+..+...+...|++
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCH
Confidence 88888888999999999988887632211 24566778899999999998875 454 45788888899999999
Q ss_pred HHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047120 466 KEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHL 543 (634)
Q Consensus 466 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 543 (634)
++|...++.+.+.. +.+...+..++..|.+.|++++|.+.++++ ...| +...|..+...+...|++++|...++++
T Consensus 156 ~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999998742 345778889999999999999999999987 3334 4778899999999999999999999999
Q ss_pred hccC------CCCCchHHHHHHH
Q 047120 544 IGMD------SSNSSSYVLLSNM 560 (634)
Q Consensus 544 ~~~~------p~~~~~~~~l~~~ 560 (634)
++.. |.+...+..+..+
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHhChhhcCCCchHHHHHHHHHh
Confidence 9998 7777666666543
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=3.1e-14 Score=135.10 Aligned_cols=242 Identities=11% Similarity=-0.067 Sum_probs=187.9
Q ss_pred HcCCchHHHHHHHHHHhcCCCCC--CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHH
Q 047120 324 RNGYSMKALEIFDNMQCELYLHP--DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIEN 401 (634)
Q Consensus 324 ~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 401 (634)
..|++++|+..|+++.......+ +...+..+...+...|++++|...++.+.+.. +.+...+..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34678888888888885421112 34577778888888899999999988888764 4467888889999999999999
Q ss_pred HHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 047120 402 AIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRI 478 (634)
Q Consensus 402 A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 478 (634)
|...|+++. +.+...+..+...|...|++++|...++++.+. .|+.......+..+...|++++|...++.+...
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999998876 346778999999999999999999999999874 566555555555667789999999999888763
Q ss_pred cCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 047120 479 HKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552 (634)
Q Consensus 479 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 552 (634)
.+++...+ .++..+...++.++|.+.++++ ...|+ ..++..+...+...|++++|...++++++.+|.+..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23344444 4777888889999999999887 43332 468888999999999999999999999999987644
Q ss_pred hHHHHHHHHhcCCCchHHHHHH
Q 047120 553 SYVLLSNMFAGLGMWNDARRVR 574 (634)
Q Consensus 553 ~~~~l~~~~~~~g~~~~A~~~~ 574 (634)
..+.++...|++++|++.+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 4467788889999988776
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=4.2e-14 Score=134.04 Aligned_cols=245 Identities=11% Similarity=-0.026 Sum_probs=151.3
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc--hhHHHHHH
Q 047120 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD-DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN--GKHGVALI 390 (634)
Q Consensus 314 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 390 (634)
.+......+...|++++|+..|++.... .|+ ...+..+...+...|++++|...++.+.+....++ ...+..+.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAK---KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHT---TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3444555666666666666666666643 332 23555566666666666666666666665321111 22356666
Q ss_pred HHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHH
Q 047120 391 DMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVK 466 (634)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~ 466 (634)
.++...|++++|+..|+++. +.+...|..+...|...|++++|+..+++..+. .|+ ...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 66777777777777776654 234556777777777777777777777776654 343 445555552333445777
Q ss_pred HHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHHhcCCh
Q 047120 467 EGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH---IEAARNLIEDM----PMEPN------DVIWRTLLSACRNYENL 533 (634)
Q Consensus 467 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~~~g~~ 533 (634)
+|...++.+.+.. +.+...+..+..++...|+ +++|...++++ ...|+ ..+|..+...|...|++
T Consensus 160 ~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 160 KADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 7777777776631 2234556666667766666 66666666555 11233 24677788888889999
Q ss_pred hHHHHHHHHHhccCCCCCchHHHHHHHHhcCC
Q 047120 534 NVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565 (634)
Q Consensus 534 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 565 (634)
++|...++++++.+|.++.++..+..+....+
T Consensus 238 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 238 VKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 99999999999999999888888777765443
No 41
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=3.7e-15 Score=156.57 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHH
Q 047120 415 DHWNAMINGLAIHGLGELAFDLLMEMER---LSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491 (634)
Q Consensus 415 ~~~~~li~~~~~~~~~~~A~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 491 (634)
.+||+||.+|++.|+.++|.++|.+|.+ .|+.||..||++||.+|++.|++++|.++|++|.+ .|+.||..+|+++
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcHHHHHHH
Confidence 4688888888888888888888877653 46788888888888888888888888888888877 6888888888888
Q ss_pred HHHHhccCCH-HHHHHHHHhC---CCCCCHHHHHHHHHHHHh
Q 047120 492 VDILGRAGHI-EAARNLIEDM---PMEPNDVIWRTLLSACRN 529 (634)
Q Consensus 492 ~~~~~~~g~~-~~A~~~~~~~---~~~p~~~~~~~l~~~~~~ 529 (634)
|+++++.|+. ++|.++|++| ++.||.++|++++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 8888888874 6777888888 778888888877765444
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=6.5e-13 Score=125.84 Aligned_cols=218 Identities=7% Similarity=-0.098 Sum_probs=126.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh----cCCHHHHHHHHHhccC-CChhHHHHHHHHHHH-
Q 047120 353 IVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSK----CGSIENAIKVFEQIED-GSVDHWNAMINGLAI- 426 (634)
Q Consensus 353 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~- 426 (634)
.+...+...|++++|...++...+. .+...+..+...|.. .+++++|...|++..+ .++..+..+...|..
T Consensus 11 ~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g 87 (273)
T 1ouv_A 11 GLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSG 87 (273)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 3333344444444444444444431 123334444444444 5555555555544432 244455555555655
Q ss_pred ---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc--
Q 047120 427 ---HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH----AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR-- 497 (634)
Q Consensus 427 ---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 497 (634)
.+++++|+..|++..+.+ +...+..+...|.. .+++++|...++++.+ .+ +...+..+...|..
T Consensus 88 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~ 160 (273)
T 1ouv_A 88 QGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGR 160 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTS
T ss_pred CCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCC
Confidence 666666666666666543 45566666666666 6667777777666665 22 34455556666665
Q ss_pred --cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCCchHHHHHHHHhc----CCCc
Q 047120 498 --AGHIEAARNLIEDMPMEPNDVIWRTLLSACRN----YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG----LGMW 567 (634)
Q Consensus 498 --~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~ 567 (634)
.+++++|++.+++.-...+...+..+...+.. .+++++|...++++++.+| +..+..++.+|.. .+++
T Consensus 161 ~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~ 238 (273)
T 1ouv_A 161 GTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNE 238 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCS
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCH
Confidence 66777777777665112345566666666666 7777777777777777655 5667777777777 7777
Q ss_pred hHHHHHHHHHHhCCC
Q 047120 568 NDARRVRSMMKERNL 582 (634)
Q Consensus 568 ~~A~~~~~~~~~~~~ 582 (634)
++|.+.+++..+.|.
T Consensus 239 ~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 239 KQAIENFKKGCKLGA 253 (273)
T ss_dssp TTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCC
Confidence 777777777766554
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=1.5e-12 Score=123.41 Aligned_cols=226 Identities=10% Similarity=-0.033 Sum_probs=182.5
Q ss_pred ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCchhHH
Q 047120 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ----LGHIDKGVAIHRYLEKDQFSLNGKHG 386 (634)
Q Consensus 311 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 386 (634)
++.++..+...+...|++++|+..|++..+. -+...+..+...+.. .+++++|...++...+.+ ++..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 4556777777788888888888888887752 234566667777777 888888888888888765 66777
Q ss_pred HHHHHHhHh----cCCHHHHHHHHHhccC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047120 387 VALIDMYSK----CGSIENAIKVFEQIED-GSVDHWNAMINGLAI----HGLGELAFDLLMEMERLSIEPDDITFTGLLN 457 (634)
Q Consensus 387 ~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 457 (634)
..+..+|.. .+++++|+..|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 788888888 8888888888887763 466788888888988 899999999999998865 5667777888
Q ss_pred HHhc----cCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 047120 458 ACAH----AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR----AGHIEAARNLIEDM-PMEPNDVIWRTLLSACR 528 (634)
Q Consensus 458 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~ 528 (634)
.+.. .+++++|...++.+.+. .+...+..+...|.. .+++++|++.+++. ... +...+..+...|.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 8877 89999999999998873 245677888899998 99999999999987 333 3777888888888
Q ss_pred h----cCChhHHHHHHHHHhccCCCCC
Q 047120 529 N----YENLNVGEPVAKHLIGMDSSNS 551 (634)
Q Consensus 529 ~----~g~~~~a~~~~~~~~~~~p~~~ 551 (634)
. .+++++|...++++++.+|+++
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 8 9999999999999999988644
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=3.7e-13 Score=125.82 Aligned_cols=195 Identities=10% Similarity=-0.031 Sum_probs=127.2
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047120 384 KHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460 (634)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 460 (634)
..+..+...+...|++++|...|+++. ..+...+..+...|...|++++|.+.++++.+.. ..+...+..+...+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 444555555666666666666666554 2345566666666777777777777777666542 224556666666777
Q ss_pred ccCCHHHHHHHHHHhHHhcCccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHH
Q 047120 461 HAGLVKEGLLCFELMRRIHKLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM-PME-PNDVIWRTLLSACRNYENLNVGE 537 (634)
Q Consensus 461 ~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~ 537 (634)
..|++++|..+++.+.. .+..| +...+..++..|.+.|++++|.+.++++ ... .+...+..+...+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777655 22233 3455666677777777777777777665 222 34566677777777777777777
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 538 PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 538 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
..++++++..|.++..+..++.++...|++++|.++++++.+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777554
No 45
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.55 E-value=4.7e-13 Score=136.27 Aligned_cols=345 Identities=10% Similarity=-0.017 Sum_probs=150.5
Q ss_pred HHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcH---HHHHHHHhhCCCCCchHHHHHHHHHHhcC---
Q 047120 191 MIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLKSGL---QFAWQIFEKMPERDLISWNSMLHGCVKCG--- 264 (634)
Q Consensus 191 li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~g--- 264 (634)
+...+.+.|++++|++.|++..+. .+...+..+...+...|. . ++|...|++..+.++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~-g~~~A~~~Lg~~y~~~g~-~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL-GYSEAQVGLADIQVGTRD-PAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TCCTGGGTCC-----------------------------CHHHHHHHHHTC--CC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHccCC-CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Confidence 456667778888888888776543 122222333333333333 4 66666666665555555555555444433
Q ss_pred --ChHHHHHHHhhCCCC-ChhHHHHHHHHHHHcCChHHH---HHHhhhCC-CCChhhHHHHHHHHHHcCCchHHHHHHHH
Q 047120 265 --KMDDAQALFDKMPKR-DVVSWANMIDGYAKLGRVDIA---RRLFDEMP-KRDVVACNAMMGGYVRNGYSMKALEIFDN 337 (634)
Q Consensus 265 --~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 337 (634)
++++|...|++..++ +...+..|...|...+..+++ .+.+.... ..+...+..+...|...+.++++......
T Consensus 87 ~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~ 166 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVER 166 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 555666666655432 333455555555554433322 22222221 12344555555555555544433333222
Q ss_pred HHhcCCCCCCHhHHHHHHHHHHccC---ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc----CCHHHHHHHHHhcc
Q 047120 338 MQCELYLHPDDASLVIVLSAIAQLG---HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC----GSIENAIKVFEQIE 410 (634)
Q Consensus 338 m~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~ 410 (634)
+... -...+...+..+...+...| +.++|...++...+.| +++...+..+..+|... +++++|+..|++..
T Consensus 167 ~~~~-a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 167 ICKA-ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHH-HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHH-HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 2111 11112224455555555555 5556666666555554 23333334444444333 45555655555554
Q ss_pred CCChhHHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----CHHHHHHHHHHhHHhcCcc
Q 047120 411 DGSVDHWNAMING-L--AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAG-----LVKEGLLCFELMRRIHKLE 482 (634)
Q Consensus 411 ~~~~~~~~~li~~-~--~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~ 482 (634)
..++..+..+... | ...+++++|+..|++..+.| +...+..+...|. .| ++++|..+|+++. .
T Consensus 245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~ 315 (452)
T 3e4b_A 245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----G 315 (452)
T ss_dssp GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----T
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----C
Confidence 2244445555544 2 23455555555555555543 3444444444444 33 5555555555543 1
Q ss_pred cChhHHHHHHHHHhc----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCC
Q 047120 483 PELQHYGCMVDILGR----AGHIEAARNLIEDMPMEPNDVIWRTLLSACRN----YENLNVGEPVAKHLIGMDS 548 (634)
Q Consensus 483 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 548 (634)
-+...+..|...|.. ..++++|.+.|++.....+......|...|.. ..+.++|..+++++.+.++
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 233344444444443 22555555555554112223333334444332 2355555555555555443
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=1.2e-12 Score=122.24 Aligned_cols=206 Identities=14% Similarity=0.050 Sum_probs=143.8
Q ss_pred hhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047120 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALID 391 (634)
Q Consensus 312 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 391 (634)
...|..+...+...|++++|+..|+++... .| .+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~----------------------------------~~~~~~~~la~ 79 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI---DP----------------------------------SSADAHAALAV 79 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH---CT----------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CC----------------------------------ChHHHHHHHHH
Confidence 344555556666666666666666665533 12 23334444445
Q ss_pred HhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHH
Q 047120 392 MYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKE 467 (634)
Q Consensus 392 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~ 467 (634)
++...|++++|.+.++++. ..+...+..+...|...|++++|.++++++.+.+..|+ ...+..+...+...|++++
T Consensus 80 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 80 VFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555443 23455667777777788888888888888776334554 4577778888888899999
Q ss_pred HHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047120 468 GLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PME-PNDVIWRTLLSACRNYENLNVGEPVAKHLIG 545 (634)
Q Consensus 468 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 545 (634)
|...++.+.+.. +.+...+..++..|.+.|++++|.+.++++ ... .+...+..+...+...|++++|.+.++++++
T Consensus 160 A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 160 AKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999998887732 334677888889999999999999999887 333 4566788888888999999999999999999
Q ss_pred cCCCCCchHHH
Q 047120 546 MDSSNSSSYVL 556 (634)
Q Consensus 546 ~~p~~~~~~~~ 556 (634)
..|.++.....
T Consensus 238 ~~p~~~~~~~~ 248 (252)
T 2ho1_A 238 LYPGSLEYQEF 248 (252)
T ss_dssp HCTTSHHHHHH
T ss_pred HCCCCHHHHHH
Confidence 99988765543
No 47
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=2e-13 Score=138.99 Aligned_cols=343 Identities=12% Similarity=-0.008 Sum_probs=233.6
Q ss_pred HHHHHHhcCCcHHHHHHHHhhCCC-CCchHHHHHHHHHHhcCCh---HHHHHHHhhCCCCChhHHHHHHHHHHHcC----
Q 047120 224 VLNGYAQLKSGLQFAWQIFEKMPE-RDLISWNSMLHGCVKCGKM---DDAQALFDKMPKRDVVSWANMIDGYAKLG---- 295 (634)
Q Consensus 224 ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~g---- 295 (634)
+...+.+.|+ +++|...|++..+ .+...+..+...|...|+. ++|...|++..+.+...+..|...+...+
T Consensus 9 la~~~~~~g~-~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 9 LANEALKRGD-TVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 4445566677 9999999988766 4566666677777778888 89999999988777777788887666655
Q ss_pred -ChHHHHHHhhhCCCC-ChhhHHHHHHHHHHcCCch---HHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHH
Q 047120 296 -RVDIARRLFDEMPKR-DVVACNAMMGGYVRNGYSM---KALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370 (634)
Q Consensus 296 -~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~---~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 370 (634)
+.++|...|++..++ +...+..|...|...+..+ ++.+.+...... | +......+...+...+.++++...
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-g---~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-G---YPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-T---CTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCcccCHHH
Confidence 778999999887653 5567888888888876544 445555555433 2 244566666777777755555444
Q ss_pred HHHHHHcCCCCchhHHHHHHHHhHhcC---CHHHHHHHHHhccC---CChhHHHHHHHHHHHc----CChHHHHHHHHHH
Q 047120 371 HRYLEKDQFSLNGKHGVALIDMYSKCG---SIENAIKVFEQIED---GSVDHWNAMINGLAIH----GLGELAFDLLMEM 440 (634)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----~~~~~A~~~~~~m 440 (634)
.....+.-...++..+..+..+|...| +.++|++.|++..+ ++...+..+...|... +++++|+..|++.
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 333333223334458888999999999 89999999998763 2334446777777654 6899999999998
Q ss_pred HHCCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccC-----CHHHHHHHHHhCC
Q 047120 441 ERLSIEPDDITFTGLLNA-C--AHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG-----HIEAARNLIEDMP 512 (634)
Q Consensus 441 ~~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~ 512 (634)
. .| +...+..+... + ...+++++|..+|++..+ .| +...+..|...|. .| ++++|.+.|++..
T Consensus 244 a-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 244 A-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp G-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred c-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 7 32 45566666665 4 568999999999999987 33 5667777888877 55 9999999999988
Q ss_pred CCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCCchHHHHHHHHhc----CCCchHHHHHHHHHHhCCCc
Q 047120 513 MEPNDVIWRTLLSACRN----YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG----LGMWNDARRVRSMMKERNLK 583 (634)
Q Consensus 513 ~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 583 (634)
..+...+..|...|.. ..++++|..+++++.+.+ ++.....|+.+|.. ..+.++|..++++..+.|..
T Consensus 315 -~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 315 -GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp -TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred -CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 6678888888877766 349999999999998754 57789999999985 45899999999999988874
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=1.4e-13 Score=127.77 Aligned_cols=174 Identities=10% Similarity=0.039 Sum_probs=85.6
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 047120 385 HGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH 461 (634)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 461 (634)
.+..+...+...|++++|...++++. ..+...+..+...+...|++++|...++++.+.. ..+...+..+...+..
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 137 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVK 137 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 33334444444444444444444332 1233444445555555555555555555555431 1234455555555555
Q ss_pred cCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHH
Q 047120 462 AGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSACRNYENLNVGEPV 539 (634)
Q Consensus 462 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~ 539 (634)
.|++++|...++.+.+.. +.+...+..++..+.+.|++++|.+.++++ .. +.+..++..+...+...|++++|...
T Consensus 138 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 215 (243)
T 2q7f_A 138 LEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215 (243)
T ss_dssp TSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred hccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence 555555555555554421 223444555555555555555555555554 11 22344555555555556666666666
Q ss_pred HHHHhccCCCCCchHHHHHHHH
Q 047120 540 AKHLIGMDSSNSSSYVLLSNMF 561 (634)
Q Consensus 540 ~~~~~~~~p~~~~~~~~l~~~~ 561 (634)
++++++.+|.++..+..++.+.
T Consensus 216 ~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 216 LDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHccCcchHHHHHHHHHHH
Confidence 6666666665555555544433
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=4.8e-13 Score=131.89 Aligned_cols=243 Identities=9% Similarity=0.043 Sum_probs=195.8
Q ss_pred hhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHHccCC-hHHHHHHHHHHHHcCCCCchhHHHHH
Q 047120 312 VVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD-DASLVIVLSAIAQLGH-IDKGVAIHRYLEKDQFSLNGKHGVAL 389 (634)
Q Consensus 312 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 389 (634)
...|..+...+...|++++|+..++++... .|+ ...|..+..++...|+ +++|+..++.+++.. +-+...|..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l---~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~ 172 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL---NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh---CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 356777888888889999999999988844 564 5677788888888886 999999998888865 4467888888
Q ss_pred HHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc-cCC
Q 047120 390 IDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAH-AGL 464 (634)
Q Consensus 390 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~-~g~ 464 (634)
..++...|++++|+..|+++. ..+...|..+..++...|++++|+..++++++. .|+ ...|+.+..++.. .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCc
Confidence 888999999999999998876 346778999999999999999999999999985 554 6688888888888 566
Q ss_pred HHHH-----HHHHHHhHHhcCccc-ChhHHHHHHHHHhccC--CHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC----
Q 047120 465 VKEG-----LLCFELMRRIHKLEP-ELQHYGCMVDILGRAG--HIEAARNLIEDMPMEPN-DVIWRTLLSACRNYE---- 531 (634)
Q Consensus 465 ~~~a-----~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g---- 531 (634)
.++| +..++.+... .| +...|..+..++.+.| ++++|++.+.++...|+ ...+..++..|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc
Confidence 5676 4778887763 34 4667888888899888 68999998888744444 678888888887764
Q ss_pred -----ChhHHHHHHHHH-hccCCCCCchHHHHHHHHhc
Q 047120 532 -----NLNVGEPVAKHL-IGMDSSNSSSYVLLSNMFAG 563 (634)
Q Consensus 532 -----~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 563 (634)
.+++|+.+++++ ++.+|.....|..++..+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 358999999999 99999999999988887764
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=5.6e-13 Score=122.04 Aligned_cols=196 Identities=10% Similarity=-0.009 Sum_probs=124.0
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047120 383 GKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNAC 459 (634)
Q Consensus 383 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 459 (634)
...+..+...+...|++++|...|+++. +.+...|..+...|...|++++|.+.++++.+.. ..+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 3444555555556666666666655543 2344556666666666677777777766666542 22345666666667
Q ss_pred hcc-CCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 047120 460 AHA-GLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNV 535 (634)
Q Consensus 460 ~~~-g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 535 (634)
... |++++|...++.+.+ .+..|+ ...+..++..+...|++++|.+.++++ ...| +...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 777 777777777776665 222232 455666667777777777777777665 2223 35666667777777777777
Q ss_pred HHHHHHHHhccCC-CCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 536 GEPVAKHLIGMDS-SNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 536 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
|...++++++..| .++..+..++.++...|+.++|..+++.+.+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 7777777777777 67777777777777777777777777776543
No 51
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=6.9e-14 Score=141.38 Aligned_cols=264 Identities=13% Similarity=0.003 Sum_probs=185.0
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCH-----hHHHHHHHHHHccCChHHHHHHHHHHHHc----CC-CCchh
Q 047120 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD-----ASLVIVLSAIAQLGHIDKGVAIHRYLEKD----QF-SLNGK 384 (634)
Q Consensus 315 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 384 (634)
+..+...+...|++++|+..|+++... .|+. ..+..+...+...|++++|...++++.+. +. +....
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQA---GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHh---cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 334555666677777777777776644 2331 34556666666777777777776665542 11 12335
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhccCC---------ChhHHHHHHHHHHHcCC-----------------hHHHHHHHH
Q 047120 385 HGVALIDMYSKCGSIENAIKVFEQIEDG---------SVDHWNAMINGLAIHGL-----------------GELAFDLLM 438 (634)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~-----------------~~~A~~~~~ 438 (634)
.+..+...|...|++++|...++++... ...++..+...|...|+ +++|++.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 5666777777778877777777765421 23367777888888888 888888877
Q ss_pred HHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC----hhHHHHHHHHHhccCCHHHHHHHHH
Q 047120 439 EMERL----SIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE----LQHYGCMVDILGRAGHIEAARNLIE 509 (634)
Q Consensus 439 ~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 509 (634)
+..+. +..|. ..++..+...+...|++++|...++++.+...-.++ ...+..+...|...|++++|.+.++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 76542 11122 247778888899999999999999888763211112 2367888999999999999999988
Q ss_pred hC-CC---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------CchHHHHHHHHhcCCCchHHHHHHH
Q 047120 510 DM-PM---EPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN------SSSYVLLSNMFAGLGMWNDARRVRS 575 (634)
Q Consensus 510 ~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~ 575 (634)
++ .. ..+ ..++..+...+...|++++|...++++++..+.. ...+..++.+|...|++++|.++++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 76 11 111 4577888888999999999999999998875433 3488899999999999999999999
Q ss_pred HHHhCC
Q 047120 576 MMKERN 581 (634)
Q Consensus 576 ~~~~~~ 581 (634)
+..+..
T Consensus 368 ~al~~~ 373 (411)
T 4a1s_A 368 QHLQLA 373 (411)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 986643
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=1.8e-13 Score=127.20 Aligned_cols=199 Identities=13% Similarity=0.042 Sum_probs=156.2
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047120 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLN 457 (634)
Q Consensus 381 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 457 (634)
.....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. ..+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3455666777788888999999888888753 366788999999999999999999999998752 235678889999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhH
Q 047120 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSACRNYENLNV 535 (634)
Q Consensus 458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~ 535 (634)
.+...|++++|...++.+.+.. +.+...+..++..+.+.|++++|.+.++++ .. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998742 345678889999999999999999999987 33 3457788999999999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 536 GEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 536 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
|+..++++++..|.++..+..++.+|...|++++|.+.++++.+...
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 99999999999999999999999999999999999999999977543
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=1.2e-13 Score=139.29 Aligned_cols=269 Identities=13% Similarity=0.034 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHhhhCCC--C-C----hhhHHHHHHHHHHcCCchHHHHHHHHHHhcC---CCCCC-HhH
Q 047120 282 VSWANMIDGYAKLGRVDIARRLFDEMPK--R-D----VVACNAMMGGYVRNGYSMKALEIFDNMQCEL---YLHPD-DAS 350 (634)
Q Consensus 282 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~~p~-~~~ 350 (634)
..+......+...|++++|...|++..+ | + ..+|..+...+...|++++|+..+++..... +-.|. ...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3444555555666666666666555432 1 1 1345555555666666666666665543210 10111 224
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-chhHHHHHHHHhHhcCC--------------------HHHHHHH
Q 047120 351 LVIVLSAIAQLGHIDKGVAIHRYLEKD----QFSL-NGKHGVALIDMYSKCGS--------------------IENAIKV 405 (634)
Q Consensus 351 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~--------------------~~~A~~~ 405 (634)
+..+...+...|++++|...++.+.+. +..+ ...++..+...|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 444455555555555555555554432 1000 12244444555555555 5555544
Q ss_pred HHhccC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHH
Q 047120 406 FEQIED-----G----SVDHWNAMINGLAIHGLGELAFDLLMEMERLSI-EPD----DITFTGLLNACAHAGLVKEGLLC 471 (634)
Q Consensus 406 ~~~~~~-----~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~ 471 (634)
+++... . ...++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 443321 0 112344444455555555555555544432100 011 11444444444555555555555
Q ss_pred HHHhHHhcCcccC----hhHHHHHHHHHhccCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHH
Q 047120 472 FELMRRIHKLEPE----LQHYGCMVDILGRAGHIEAARNLIEDM----PMEPN----DVIWRTLLSACRNYENLNVGEPV 539 (634)
Q Consensus 472 ~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~ 539 (634)
++.+.....-.++ ..++..+...|...|++++|.+.++++ +..++ ..++..+...+...|++++|...
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5444331100000 223444444455555555555444443 00111 22344444444445555555555
Q ss_pred HHHHhccCCCC
Q 047120 540 AKHLIGMDSSN 550 (634)
Q Consensus 540 ~~~~~~~~p~~ 550 (634)
++++++..+..
T Consensus 330 ~~~al~~~~~~ 340 (406)
T 3sf4_A 330 AEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 55554444443
No 54
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.52 E-value=1.2e-12 Score=118.95 Aligned_cols=192 Identities=16% Similarity=0.055 Sum_probs=97.1
Q ss_pred ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 047120 311 DVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHP-DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVAL 389 (634)
Q Consensus 311 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 389 (634)
+...+..+...+.+.|++++|+..|++... ..| +...+..+...+.+.|++++|+..++.+.+.. +.+...+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALK---ENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 344555666666666666666666666663 234 33455555556666666666666666665543 3344555555
Q ss_pred HHHhHhc-----------CCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047120 390 IDMYSKC-----------GSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGL 455 (634)
Q Consensus 390 ~~~~~~~-----------~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 455 (634)
..++... |++++|+..|++.. +.+...|..+...+...|++++|+..|++..+.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 5555555 55555555555543 1234455555555555555555555555555543 344555555
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHh
Q 047120 456 LNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIED 510 (634)
Q Consensus 456 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 510 (634)
..++...|++++|+..++.+.+.. +.+...+..+..++.+.|++++|.+.+++
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555555555555555554421 12234455555555555555555555544
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.52 E-value=9.9e-13 Score=124.46 Aligned_cols=228 Identities=9% Similarity=-0.027 Sum_probs=187.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC--CCh----hHHHHHHHH
Q 047120 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED--GSV----DHWNAMING 423 (634)
Q Consensus 350 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~li~~ 423 (634)
.+......+...|++++|+..++.+.+.. +.+...+..+..+|...|++++|+..++++.+ ++. ..|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 44556677889999999999999999864 34566888899999999999999999998764 222 248899999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHH
Q 047120 424 LAIHGLGELAFDLLMEMERLSIEP-DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIE 502 (634)
Q Consensus 424 ~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 502 (634)
+...|++++|+..|++..+. .| +...+..+...+...|++++|...++++.+. .+.+...+..+...+...++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999985 44 4578999999999999999999999998763 2334667777773444556999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHhccC---CCC-----CchHHHHHHHHhcCCCchH
Q 047120 503 AARNLIEDM-PMEPN-DVIWRTLLSACRNYEN---LNVGEPVAKHLIGMD---SSN-----SSSYVLLSNMFAGLGMWND 569 (634)
Q Consensus 503 ~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~ 569 (634)
+|.+.++++ ...|+ ...+..+...+...|+ +++|...++++++.. |.. ...|..++.+|...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999988 44454 6778888888888888 899999999999876 332 2578889999999999999
Q ss_pred HHHHHHHHHhCCC
Q 047120 570 ARRVRSMMKERNL 582 (634)
Q Consensus 570 A~~~~~~~~~~~~ 582 (634)
|.+.++++.+...
T Consensus 240 A~~~~~~al~~~p 252 (272)
T 3u4t_A 240 ADAAWKNILALDP 252 (272)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCc
Confidence 9999999977654
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=1.4e-13 Score=134.74 Aligned_cols=264 Identities=15% Similarity=0.064 Sum_probs=184.7
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCC-----HhHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-chh
Q 047120 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD-----DASLVIVLSAIAQLGHIDKGVAIHRYLEKD----QFSL-NGK 384 (634)
Q Consensus 315 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 384 (634)
+......+...|++++|+..|+++... .|+ ...+..+...+...|++++|...++.+.+. +..+ ...
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 334455666677777777777777644 232 245556666667777777777777665432 2111 245
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHH
Q 047120 385 HGVALIDMYSKCGSIENAIKVFEQIED-----GS----VDHWNAMINGLAIHGL--------------------GELAFD 435 (634)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~A~~ 435 (634)
++..+...+...|++++|...+++..+ .+ ..++..+...|...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 566677777788888888877776542 12 2367777788888888 888888
Q ss_pred HHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC----hhHHHHHHHHHhccCCHHHHHH
Q 047120 436 LLMEMERL----SIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE----LQHYGCMVDILGRAGHIEAARN 506 (634)
Q Consensus 436 ~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 506 (634)
.+++.... +..|. ..++..+...+...|++++|...++.+.+...-.++ ...+..++..+...|++++|.+
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88776432 11121 346777888889999999999999887753211112 3367888899999999999999
Q ss_pred HHHhC-C---CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------CchHHHHHHHHhcCCCchHHHH
Q 047120 507 LIEDM-P---MEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN------SSSYVLLSNMFAGLGMWNDARR 572 (634)
Q Consensus 507 ~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 572 (634)
.+++. . ..++ ..++..+...+...|++++|...++++++..+.. ...+..++.+|.+.|++++|.+
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 98876 1 1122 4577788888999999999999999998876433 3378889999999999999999
Q ss_pred HHHHHHhCC
Q 047120 573 VRSMMKERN 581 (634)
Q Consensus 573 ~~~~~~~~~ 581 (634)
+++++.+..
T Consensus 325 ~~~~a~~~~ 333 (338)
T 3ro2_A 325 FAEKHLEIS 333 (338)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 999987653
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=2.8e-12 Score=117.31 Aligned_cols=205 Identities=10% Similarity=-0.088 Sum_probs=143.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHH
Q 047120 350 SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAI 426 (634)
Q Consensus 350 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 426 (634)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++. ..+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34444444445555555555555444432 2234455555666666666666666666554 2355567777788888
Q ss_pred c-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHH
Q 047120 427 H-GLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAA 504 (634)
Q Consensus 427 ~-~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 504 (634)
. |++++|...++++.+.+..|+ ...+..+...+...|++++|...++.+.+.. +.+...+..++..+.+.|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHH
Confidence 8 888888888888877333454 4577788888888999999999988887631 23466788888889999999999
Q ss_pred HHHHHhC-CCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHH
Q 047120 505 RNLIEDM-PME--PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557 (634)
Q Consensus 505 ~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 557 (634)
.+.++++ ... .+...+..+...+...|+.+.+..+++.+.+..|.++.....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9998887 323 4566777777778889999999999999988899888766544
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.50 E-value=1.1e-12 Score=115.99 Aligned_cols=166 Identities=10% Similarity=0.076 Sum_probs=138.3
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHH
Q 047120 413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCM 491 (634)
Q Consensus 413 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 491 (634)
+...|..+...|...|++++|++.|++..+. .|+ ..++..+..++.+.|++++|...+..+.... +.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHH
Confidence 4567888888888888899999888888875 554 5688888888999999999999988887632 3345667778
Q ss_pred HHHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchH
Q 047120 492 VDILGRAGHIEAARNLIEDM-PME-PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWND 569 (634)
Q Consensus 492 ~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 569 (634)
...+...++++.|.+.+++. ... .+...+..+...+...|++++|+..++++++.+|.++.+|..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88888999999999988887 333 4477888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 047120 570 ARRVRSMMKERNL 582 (634)
Q Consensus 570 A~~~~~~~~~~~~ 582 (634)
|++.+++..+...
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9999999877643
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=1.1e-12 Score=129.37 Aligned_cols=228 Identities=8% Similarity=0.049 Sum_probs=194.1
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCC-HHHHHHHHHhcc---CCChhHHHHHHHHH
Q 047120 349 ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS-IENAIKVFEQIE---DGSVDHWNAMINGL 424 (634)
Q Consensus 349 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~---~~~~~~~~~li~~~ 424 (634)
..|..+...+...|++++|+..++.+++.. +.+...|..+..++...|+ +++|+..|+++. ..+...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 467777888889999999999999999875 4567889999999999997 999999999887 34777999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc-cCCHH
Q 047120 425 AIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR-AGHIE 502 (634)
Q Consensus 425 ~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 502 (634)
...|++++|+..|+++++. .|+ ...|..+..++...|++++|+..++++.+.. +.+...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999985 564 6699999999999999999999999998841 3357789999999999 66657
Q ss_pred HH-----HHHHHhC-CCCCC-HHHHHHHHHHHHhcC--ChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCC--------
Q 047120 503 AA-----RNLIEDM-PMEPN-DVIWRTLLSACRNYE--NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG-------- 565 (634)
Q Consensus 503 ~A-----~~~~~~~-~~~p~-~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 565 (634)
+| ++.++++ .+.|+ ...|..+...+...| ++++|...++++ +.+|+++..+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777776 44554 678999999998888 699999999998 888999999999999999875
Q ss_pred -CchHHHHHHHHH-HhCCC
Q 047120 566 -MWNDARRVRSMM-KERNL 582 (634)
Q Consensus 566 -~~~~A~~~~~~~-~~~~~ 582 (634)
.+++|+++++++ .+.+.
T Consensus 332 ~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDT 350 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhCc
Confidence 358999999998 55543
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.48 E-value=9.7e-13 Score=124.69 Aligned_cols=218 Identities=12% Similarity=0.009 Sum_probs=180.1
Q ss_pred HccCChHHHHHHHHHHHHcCC---CCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHH
Q 047120 359 AQLGHIDKGVAIHRYLEKDQF---SLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGEL 432 (634)
Q Consensus 359 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~ 432 (634)
...|++++|+..++.+.+... +.+..++..+...+...|++++|...|+++. +.+...|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 345789999999999988642 1246788889999999999999999999876 3467899999999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC
Q 047120 433 AFDLLMEMERLSIEP-DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM 511 (634)
Q Consensus 433 A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 511 (634)
|...|+++.+. .| +...+..+...+...|++++|...++.+.+. .|+..........+...|++++|...+++.
T Consensus 96 A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 96 AYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999985 44 4678999999999999999999999999874 455444445555667789999999999776
Q ss_pred --CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 512 --PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS----NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 512 --~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
..+++...+. ++..+...++.++|...++++++..|. ++..+..++.+|.+.|++++|...++++.+...
T Consensus 171 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 171 FEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 2334444443 667778888999999999999988764 367899999999999999999999999987653
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=4.2e-13 Score=137.60 Aligned_cols=208 Identities=7% Similarity=-0.038 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCH-HHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 047120 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSI-ENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEM 440 (634)
Q Consensus 365 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 440 (634)
+.+...++...+. .+.+...+..+...+...|++ ++|++.|++.. ..+...|..+...|...|++++|...|++.
T Consensus 85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444443332 234556666777777777777 77777777664 335678888899999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhcc--------CCHHH
Q 047120 441 ERLSIEPDDITFTGLLNACAHA---------GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA--------GHIEA 503 (634)
Q Consensus 441 ~~~g~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 503 (634)
.+. .|+...+..+...+... |++++|+..++++.+.. +.+...|..+..+|... |++++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 875 67778888999999999 99999999999998742 33477788999999988 99999
Q ss_pred HHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHH
Q 047120 504 ARNLIEDM-PMEP----NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577 (634)
Q Consensus 504 A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 577 (634)
|++.|+++ ...| +...|..+..+|...|++++|...++++++++|.++..+..++.++...|++++|++.+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999988 4456 68899999999999999999999999999999999999999999999999999999765443
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.46 E-value=5.4e-13 Score=134.39 Aligned_cols=260 Identities=14% Similarity=0.062 Sum_probs=112.0
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCC-----HhHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-chh
Q 047120 315 CNAMMGGYVRNGYSMKALEIFDNMQCELYLHPD-----DASLVIVLSAIAQLGHIDKGVAIHRYLEKD----QFSL-NGK 384 (634)
Q Consensus 315 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 384 (634)
+......+...|++++|+..|+++... .|+ ...+..+...+...|++++|...++.+.+. +..+ ...
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 334444455555555555555555433 121 123444444455555555555554443321 1111 123
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHH
Q 047120 385 HGVALIDMYSKCGSIENAIKVFEQIED-----GS----VDHWNAMINGLAIHGL--------------------GELAFD 435 (634)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~A~~ 435 (634)
++..+...|...|++++|...+++..+ .+ ..++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 344444555555555555555444331 11 1244444445555555 555555
Q ss_pred HHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC----hhHHHHHHHHHhccCCHHHHHH
Q 047120 436 LLMEMERL----SIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE----LQHYGCMVDILGRAGHIEAARN 506 (634)
Q Consensus 436 ~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 506 (634)
.+++..+. +..|. ..++..+...+...|++++|...++++.+...-.++ ...+..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 44443221 10111 124444444555555555555555544431111111 1234445555555555555555
Q ss_pred HHHhC-C---CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------CchHHHHHHHHhcCCCchHHHH
Q 047120 507 LIEDM-P---MEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN------SSSYVLLSNMFAGLGMWNDARR 572 (634)
Q Consensus 507 ~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 572 (634)
.+++. . ..++ ..++..+...+...|++++|...++++++..+.. +..+..++.+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 54443 0 0011 2234444444555555555555555554443221 2244445555555555555555
Q ss_pred HHHHH
Q 047120 573 VRSMM 577 (634)
Q Consensus 573 ~~~~~ 577 (634)
.+++.
T Consensus 329 ~~~~a 333 (406)
T 3sf4_A 329 FAEKH 333 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.45 E-value=4.9e-10 Score=117.91 Aligned_cols=219 Identities=9% Similarity=-0.019 Sum_probs=165.0
Q ss_pred hHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHH-HHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHH
Q 047120 329 MKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGV-AIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFE 407 (634)
Q Consensus 329 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 407 (634)
+.+..+|++.... +.-+...|.....-+...|+.+.|. .+++.+... .+.+...+...+....+.|+++.|.++|+
T Consensus 326 ~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iye 402 (679)
T 4e6h_A 326 ARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTIL 402 (679)
T ss_dssp HHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3456778888765 2335566777777777888888896 999998864 35567778888889999999999999998
Q ss_pred hccC-------------CC------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 047120 408 QIED-------------GS------------VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462 (634)
Q Consensus 408 ~~~~-------------~~------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 462 (634)
++.. |+ ...|...+....+.|+.+.|..+|.+..+....+....|...+..-.+.
T Consensus 403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Confidence 8753 21 2368888888888899999999999998751112334444333333333
Q ss_pred -CCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHH
Q 047120 463 -GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP----NDVIWRTLLSACRNYENLNVG 536 (634)
Q Consensus 463 -g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a 536 (634)
++.+.|..+|+...+. ++.+...+...++.....|+.+.|..+|+++ ...| ....|...+..-.+.|+.+.+
T Consensus 483 ~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp TSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred CCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 4589999999999885 3345666778888888999999999999987 3334 245788888888899999999
Q ss_pred HHHHHHHhccCCCCCc
Q 047120 537 EPVAKHLIGMDSSNSS 552 (634)
Q Consensus 537 ~~~~~~~~~~~p~~~~ 552 (634)
..+.+++.+..|+++.
T Consensus 561 ~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 561 RTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHhCCCCcH
Confidence 9999999999998753
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=3.7e-12 Score=127.27 Aligned_cols=223 Identities=8% Similarity=-0.034 Sum_probs=129.9
Q ss_pred HHHHccCChHHHHHHHHHHHHc----CCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhccC-----C-----ChhHHHHH
Q 047120 356 SAIAQLGHIDKGVAIHRYLEKD----QFSL-NGKHGVALIDMYSKCGSIENAIKVFEQIED-----G-----SVDHWNAM 420 (634)
Q Consensus 356 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~-----~~~~~~~l 420 (634)
..+...|++++|...++.+.+. +.++ ...++..+..+|...|+++.|...+++..+ + ...+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3344555555555555555442 1111 224455555666666666666665555431 1 12356666
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---Cc-ccChhHHHHH
Q 047120 421 INGLAIHGLGELAFDLLMEMERLSI-EPD----DITFTGLLNACAHAGLVKEGLLCFELMRRIH---KL-EPELQHYGCM 491 (634)
Q Consensus 421 i~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~~~~~l 491 (634)
...|...|++++|+..+++..+... .++ ..++..+...|...|++++|...++++.+.. +. +....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 6777777777777777766553210 011 1366667777777777777777777765511 22 2224456777
Q ss_pred HHHHhccCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 047120 492 VDILGRAGHIEAARNLIEDM-PM-----EPN-DVIWRTLLSACRNYEN---LNVGEPVAKHLIGMDSSNSSSYVLLSNMF 561 (634)
Q Consensus 492 ~~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (634)
...|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ +++|..++++. ...|.....+..++.+|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 77777777777777777665 11 121 2234556666677777 66666666665 22234445677778888
Q ss_pred hcCCCchHHHHHHHHHHh
Q 047120 562 AGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 562 ~~~g~~~~A~~~~~~~~~ 579 (634)
...|++++|.+++++..+
T Consensus 350 ~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 888888888888877754
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=6.7e-13 Score=128.30 Aligned_cols=236 Identities=11% Similarity=0.065 Sum_probs=124.2
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHhcCC-----CCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHc------CC-
Q 047120 313 VACNAMMGGYVRNGYSMKALEIFDNMQCELY-----LHP-DDASLVIVLSAIAQLGHIDKGVAIHRYLEKD------QF- 379 (634)
Q Consensus 313 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-----~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~- 379 (634)
.++..+...+...|++++|+.+++++..... -.| ....+..+...+...|++++|...++.+.+. +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4566667777777777777777777664200 011 2234555555566666666666666555432 11
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHH
Q 047120 380 SLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERL------SIEPD-DITF 452 (634)
Q Consensus 380 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~~ 452 (634)
+.... .+..+...|...|++++|...++++.+. +-.|+ ...+
T Consensus 108 ~~~~~-------------------------------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 108 PAVAA-------------------------------TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp HHHHH-------------------------------HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHH-------------------------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 11223 3444444555555555555555554432 11122 2345
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhc-----Cccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-C---------CCCC
Q 047120 453 TGLLNACAHAGLVKEGLLCFELMRRIH-----KLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM-P---------MEPN 516 (634)
Q Consensus 453 ~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~ 516 (634)
..+...+...|++++|..+++.+.+.. +..| ....+..+...|.+.|++++|.+.++++ . ..+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 556666666666666666666655420 1111 2334566666666666666666666554 1 0111
Q ss_pred -------HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 517 -------DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 517 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
...+..+...+...+.+.++...++++....|..+..+..++.+|.+.|++++|.+++++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112223333345567777788888888877788888888899999999999999998888754
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=2.5e-12 Score=129.85 Aligned_cols=262 Identities=12% Similarity=0.036 Sum_probs=168.2
Q ss_pred HHHHHHHcCChHHHHHHhhhCCC--C-Ch----hhHHHHHHHHHHcCCchHHHHHHHHHHhcC---CCCC-CHhHHHHHH
Q 047120 287 MIDGYAKLGRVDIARRLFDEMPK--R-DV----VACNAMMGGYVRNGYSMKALEIFDNMQCEL---YLHP-DDASLVIVL 355 (634)
Q Consensus 287 l~~~~~~~g~~~~A~~~~~~~~~--~-~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~~p-~~~~~~~ll 355 (634)
+...+...|++++|...|++..+ + +. .+|..+...+...|++++|+..+++..... +-.| ....+..+.
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 34444555555555555544432 1 11 245555556666666666666665554320 0011 223455555
Q ss_pred HHHHccCChHHHHHHHHHHHHc----CC-CCchhHHHHHHHHhHhcCC-----------------HHHHHHHHHhccC--
Q 047120 356 SAIAQLGHIDKGVAIHRYLEKD----QF-SLNGKHGVALIDMYSKCGS-----------------IENAIKVFEQIED-- 411 (634)
Q Consensus 356 ~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~~~~-- 411 (634)
..+...|++++|...++.+.+. +. +.....+..+...|...|+ +++|+..+++..+
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 6666666666666666655442 11 1123456666777777777 7777777665431
Q ss_pred ---C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 047120 412 ---G----SVDHWNAMINGLAIHGLGELAFDLLMEMERLSI-EPD----DITFTGLLNACAHAGLVKEGLLCFELMRRIH 479 (634)
Q Consensus 412 ---~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 479 (634)
. ....+..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...++.+....
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 1 223677788888889999999988888765311 012 2377888889999999999999998877632
Q ss_pred Cccc----ChhHHHHHHHHHhccCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047120 480 KLEP----ELQHYGCMVDILGRAGHIEAARNLIEDM-PM---EPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547 (634)
Q Consensus 480 ~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 547 (634)
.-.. ....+..+...|...|++++|.+.++++ .. .++ ..++..+...+...|++++|...+++++++.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 1111 1456888899999999999999999876 11 112 3477788888999999999999999998776
Q ss_pred C
Q 047120 548 S 548 (634)
Q Consensus 548 p 548 (634)
+
T Consensus 374 ~ 374 (411)
T 4a1s_A 374 X 374 (411)
T ss_dssp C
T ss_pred h
Confidence 4
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.39 E-value=1.2e-11 Score=109.32 Aligned_cols=166 Identities=11% Similarity=0.061 Sum_probs=137.0
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 047120 382 NGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP-DDITFTGLLN 457 (634)
Q Consensus 382 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~ 457 (634)
++.+|..+...|...|++++|++.|++.. +.++.+|..+..+|...|++++|+..+.+.... .| +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 45677778888888888888888888765 346678888889999999999999999988875 34 4567777888
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 047120 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNV 535 (634)
Q Consensus 458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 535 (634)
.+...++++.+...+..+.... +.+...+..+...|.+.|++++|++.|+++ ...| +..+|..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 8889999999999999987732 345677888999999999999999999987 4344 47789999999999999999
Q ss_pred HHHHHHHHhccCCCCC
Q 047120 536 GEPVAKHLIGMDSSNS 551 (634)
Q Consensus 536 a~~~~~~~~~~~p~~~ 551 (634)
|+..++++++.+|.++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999998754
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.39 E-value=1.6e-11 Score=122.66 Aligned_cols=230 Identities=8% Similarity=-0.029 Sum_probs=178.5
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhcCCCCCC----HhHHHHHHHHHHccCChHHHHHHHHHHHHcC--CC----CchhHHH
Q 047120 318 MMGGYVRNGYSMKALEIFDNMQCELYLHPD----DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ--FS----LNGKHGV 387 (634)
Q Consensus 318 l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~ 387 (634)
....+...|++++|+..|++......-.++ ..++..+...+...|+++.|...+.++.+.. .. ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566778889999999999998753222233 2467788888899999999999998887531 11 1235777
Q ss_pred HHHHHhHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHH
Q 047120 388 ALIDMYSKCGSIENAIKVFEQIED-----GS----VDHWNAMINGLAIHGLGELAFDLLMEMERL----SIEPD-DITFT 453 (634)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~ 453 (634)
.+..+|...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888999999999999999987752 12 237888999999999999999999998762 22244 55889
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcC---cccChhHHHHHHHHHhccCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 047120 454 GLLNACAHAGLVKEGLLCFELMRRIHK---LEPELQHYGCMVDILGRAGH---IEAARNLIEDMPMEPN-DVIWRTLLSA 526 (634)
Q Consensus 454 ~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~ 526 (634)
.+...+...|++++|...++++.+... .+.....+..+...|...|+ +++|+.++++.+..|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999998876321 11123336778889999999 8999999999865554 3467788889
Q ss_pred HHhcCChhHHHHHHHHHhccC
Q 047120 527 CRNYENLNVGEPVAKHLIGMD 547 (634)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~ 547 (634)
|...|++++|...++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998764
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.38 E-value=6e-12 Score=134.09 Aligned_cols=162 Identities=17% Similarity=0.208 Sum_probs=126.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHH
Q 047120 413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGC 490 (634)
Q Consensus 413 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~ 490 (634)
+..+|+.|...|.+.|++++|++.|++..+. .|+ ...|..+..++.+.|++++|+..|+++.+. .|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 3456777777777888888888888877764 555 557777888888888888888888887763 343 667788
Q ss_pred HHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCch
Q 047120 491 MVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWN 568 (634)
Q Consensus 491 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 568 (634)
+..+|.+.|++++|++.|+++ .+.|+ ...|..+..++...|++++|+..|+++++++|.++..+..++.+|...|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 888888888888888888876 44454 6678888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHh
Q 047120 569 DARRVRSMMKE 579 (634)
Q Consensus 569 ~A~~~~~~~~~ 579 (634)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=8.2e-12 Score=121.95 Aligned_cols=134 Identities=11% Similarity=-0.015 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC----hh
Q 047120 416 HWNAMINGLAIHGLGELAFDLLMEMERLSI-EPD----DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE----LQ 486 (634)
Q Consensus 416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~ 486 (634)
.+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...++.+.....-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 566677777777888888877777654210 011 236777778888888888888888877652211111 45
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120 487 HYGCMVDILGRAGHIEAARNLIEDM-PM---EPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549 (634)
Q Consensus 487 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (634)
++..+...|...|++++|.+.++++ .. .++ ..++..+...+...|++++|...++++++..+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 6778888889999999998888876 11 111 346777888899999999999999999887654
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.37 E-value=2.8e-10 Score=109.56 Aligned_cols=220 Identities=11% Similarity=0.018 Sum_probs=146.2
Q ss_pred hHHHHHHHHHHhcCCCCCCHhHHHHHHHHHH-------ccCCh-------HHHHHHHHHHHHcCCCCchhHHHHHHHHhH
Q 047120 329 MKALEIFDNMQCELYLHPDDASLVIVLSAIA-------QLGHI-------DKGVAIHRYLEKDQFSLNGKHGVALIDMYS 394 (634)
Q Consensus 329 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 394 (634)
++|+.+|++..... +-+...|..++..+. ..|++ ++|..+++++++.-.+.+...+..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 56677777776431 223345555554443 34665 777777777776322345567777777777
Q ss_pred hcCCHHHHHHHHHhccC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCCHHHHH
Q 047120 395 KCGSIENAIKVFEQIED--G-SVD-HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA-HAGLVKEGL 469 (634)
Q Consensus 395 ~~~~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~ 469 (634)
+.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. .++...|........ ..|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 77888888887777653 2 333 67777777888888888888888887642 223334443333322 368888888
Q ss_pred HHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-C---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047120 470 LCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-P---MEPN--DVIWRTLLSACRNYENLNVGEPVAKHL 543 (634)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 543 (634)
.+|+.+.+.. +.+...|..++..+.+.|++++|..+|+++ . .+|+ ...|..++....+.|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888877632 234667777888888888888888888876 2 3443 557777777777788888888888888
Q ss_pred hccCCCCCch
Q 047120 544 IGMDSSNSSS 553 (634)
Q Consensus 544 ~~~~p~~~~~ 553 (634)
++..|.++..
T Consensus 268 ~~~~p~~~~~ 277 (308)
T 2ond_A 268 FTAFREEYEG 277 (308)
T ss_dssp HHHTTTTTSS
T ss_pred HHHccccccc
Confidence 8888876543
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=5.9e-10 Score=110.71 Aligned_cols=261 Identities=13% Similarity=-0.009 Sum_probs=152.9
Q ss_pred HHHHHHcCCchHHHHHHHHHHhcCCCCCCHh----HHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCc----hhHHHHH
Q 047120 319 MGGYVRNGYSMKALEIFDNMQCELYLHPDDA----SLVIVLSAIAQLGHIDKGVAIHRYLEKDQF-SLN----GKHGVAL 389 (634)
Q Consensus 319 ~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l 389 (634)
...+...|++++|...+++...... ..+.. .+..+...+...|+++.|...+++..+..- ..+ ...+..+
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445556666666666666654311 11111 334444555666777777666666554210 011 1234455
Q ss_pred HHHhHhcCCHHHHHHHHHhccC----------C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHHH
Q 047120 390 IDMYSKCGSIENAIKVFEQIED----------G-SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIE--P--DDITFTG 454 (634)
Q Consensus 390 ~~~~~~~~~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p--~~~~~~~ 454 (634)
...+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 6666777777777777665531 1 1224555667777778888888777776653211 1 1245666
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHH-----HHHHHHhccCCHHHHHHHHHhC-CCCCC-----HHHHHHH
Q 047120 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYG-----CMVDILGRAGHIEAARNLIEDM-PMEPN-----DVIWRTL 523 (634)
Q Consensus 455 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l 523 (634)
+...+...|++++|...++.......-......+. ..+..+...|++++|...+++. ...|. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 77777778888888888877765211111111111 2334466788888888888776 22221 2345566
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCC------CchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 524 LSACRNYENLNVGEPVAKHLIGMDSSN------SSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 524 ~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
...+...|++++|...++++++..+.. ...+..++.++...|+.++|...+++....
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 677777888888888888777654321 125666777788888888888888777543
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=3.5e-11 Score=106.09 Aligned_cols=161 Identities=14% Similarity=-0.012 Sum_probs=105.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHh
Q 047120 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496 (634)
Q Consensus 417 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 496 (634)
|..+...+...|++++|...++++.+.. ..+...+..+...+...|++++|...++.+.+. .+.+...+..++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 4444455555555555555555554431 123445555666666666666666666666552 1223455666666666
Q ss_pred ccCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHH
Q 047120 497 RAGHIEAARNLIEDM-P-MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVR 574 (634)
Q Consensus 497 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 574 (634)
..|++++|.+.++++ . .+.+...+..+...+...|++++|...++++++..|.++..+..++.++...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777766665 2 23446677777777788888888888888888888888888888888888888888888888
Q ss_pred HHHHhC
Q 047120 575 SMMKER 580 (634)
Q Consensus 575 ~~~~~~ 580 (634)
+++.+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 877654
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.32 E-value=5.1e-09 Score=110.23 Aligned_cols=215 Identities=9% Similarity=-0.031 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH-HHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 047120 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAI-KVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEM 440 (634)
Q Consensus 365 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 440 (634)
+.+..+|++++.. ++....+|...+..+...|+.++|. .+|++.. ..+...|-..+....+.|++++|.++|+++
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455678777765 3567888989999999999999996 9998876 345667888888999999999999999998
Q ss_pred HHCC---------CCCC------------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhcc-
Q 047120 441 ERLS---------IEPD------------DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA- 498 (634)
Q Consensus 441 ~~~g---------~~p~------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 498 (634)
.... -.|+ ...|...+....+.|..+.|..+|..+.+..+ ......|...+..-.+.
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence 8641 0142 23677778888888999999999999987311 12234454444444444
Q ss_pred CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC---CCchHHHHHHHHhcCCCchHHHHH
Q 047120 499 GHIEAARNLIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS---NSSSYVLLSNMFAGLGMWNDARRV 573 (634)
Q Consensus 499 g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~ 573 (634)
++.+.|.++|+.. ..+.+...|...+......|+.+.|..+|+++++..|+ ....|..++..-.+.|+.+.+.++
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4589999999987 33345667778888888899999999999999998874 445788888888899999999999
Q ss_pred HHHHHhCC
Q 047120 574 RSMMKERN 581 (634)
Q Consensus 574 ~~~~~~~~ 581 (634)
.+++.+.-
T Consensus 564 ~~R~~~~~ 571 (679)
T 4e6h_A 564 EKRFFEKF 571 (679)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 99997653
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.32 E-value=1e-10 Score=107.26 Aligned_cols=205 Identities=7% Similarity=-0.023 Sum_probs=146.2
Q ss_pred CCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHH
Q 047120 346 PDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMIN 422 (634)
Q Consensus 346 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~ 422 (634)
.|...+......+...|++++|...++.+.+...+++...+..+..++...|++++|+..|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 455677777888888889999998888888876436666777788888888888888888887752 34557888888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC---hhHHHHH
Q 047120 423 GLAIHGLGELAFDLLMEMERLSIEPD-D-------ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE---LQHYGCM 491 (634)
Q Consensus 423 ~~~~~~~~~~A~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 491 (634)
.|...|++++|+..+++..+. .|+ . ..|..+...+...|++++|+..++.+.+. .|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHH
Confidence 888888888888888888774 444 3 34667777778888888888888888762 343 4567777
Q ss_pred HHHHhccCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120 492 VDILGRAGHIEAARNLIEDM-P-MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA 562 (634)
Q Consensus 492 ~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (634)
..+|...|+. .++++ . ...+...|.... ....+.+++|...++++++++|.++.....+..+..
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 7777665543 22222 1 122333443333 234566899999999999999999888877776653
No 76
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=1.6e-10 Score=111.36 Aligned_cols=213 Identities=8% Similarity=-0.032 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHhH-------hcCCH-------HHHHHHHHhccC---C-ChhHHHHHHHHHHH
Q 047120 365 DKGVAIHRYLEKDQFSLNGKHGVALIDMYS-------KCGSI-------ENAIKVFEQIED---G-SVDHWNAMINGLAI 426 (634)
Q Consensus 365 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 426 (634)
+.|...|+++++.. +.++..|..++..+. +.|++ ++|..+|++... | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67778888888753 557778888887775 35875 899999998764 2 55689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHh-ccCCHHH
Q 047120 427 HGLGELAFDLLMEMERLSIEPD-DI-TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG-RAGHIEA 503 (634)
Q Consensus 427 ~~~~~~A~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 503 (634)
.|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|..+|+++.+.. +++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999974 565 33 79999999999999999999999998731 334455554444322 3799999
Q ss_pred HHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC---CC-CCchHHHHHHHHhcCCCchHHHHHHHHH
Q 047120 504 ARNLIEDM-PME-PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD---SS-NSSSYVLLSNMFAGLGMWNDARRVRSMM 577 (634)
Q Consensus 504 A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 577 (634)
|.++|+++ ... .+...|..++..+.+.|++++|..+|+++++.. |. ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 323 357789999999999999999999999999963 32 5668999999999999999999999999
Q ss_pred HhCCC
Q 047120 578 KERNL 582 (634)
Q Consensus 578 ~~~~~ 582 (634)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 77644
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.31 E-value=1.1e-10 Score=116.32 Aligned_cols=222 Identities=10% Similarity=0.024 Sum_probs=137.8
Q ss_pred HHHccCChHHHHHHHHHHHHcC--CC---CchhHHHHHHHHhHhcCCHHHHHHHHHhccC-----CC-----hhHHHHHH
Q 047120 357 AIAQLGHIDKGVAIHRYLEKDQ--FS---LNGKHGVALIDMYSKCGSIENAIKVFEQIED-----GS-----VDHWNAMI 421 (634)
Q Consensus 357 ~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-----~~~~~~li 421 (634)
.+...|++++|...++.+.+.. .. ....++..+..+|...|+++.|...+++..+ ++ ..+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 3445566666666666655421 01 1234555566666666776666666655431 11 23566777
Q ss_pred HHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CcccChhHHHHHHH
Q 047120 422 NGLAIHGLGELAFDLLMEMERL----SIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIH---KLEPELQHYGCMVD 493 (634)
Q Consensus 422 ~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~ 493 (634)
..|...|++++|.+.+++..+. +-.+. ..++..+..++...|++++|...++++.... +.+....++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 7777777777777777776542 11111 2366777777888888888888887776511 22223556777788
Q ss_pred HHhccCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCCchHHHHHHHHhc
Q 047120 494 ILGRAGHIEAARNLIEDM----PM--EPN-DVIWRTLLSACRNYEN---LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563 (634)
Q Consensus 494 ~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 563 (634)
.|.+.|++++|...+++. .. .|. ...+..+...+...|+ +.+|...+++. ...|.....+..++.+|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 888888888888888765 11 222 3345555555667777 77777776662 2223444567778888888
Q ss_pred CCCchHHHHHHHHHHh
Q 047120 564 LGMWNDARRVRSMMKE 579 (634)
Q Consensus 564 ~g~~~~A~~~~~~~~~ 579 (634)
.|++++|.+++++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8888888888887754
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=6.8e-10 Score=110.44 Aligned_cols=229 Identities=9% Similarity=0.007 Sum_probs=176.3
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCCCC----HhHHHHHHHHHHccCChHHHHHHHHHHHHcC--C---CC-chhH
Q 047120 316 NAMMGGYVRNGYSMKALEIFDNMQCELYLHPD----DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ--F---SL-NGKH 385 (634)
Q Consensus 316 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~~-~~~~ 385 (634)
......+...|++++|+..|++......-.++ ...+..+...+...|+++.|...+..+.+.. . .+ ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 34455677889999999999988754222233 2467778888899999999999998877531 1 11 2456
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCC-HH
Q 047120 386 GVALIDMYSKCGSIENAIKVFEQIED-----GS----VDHWNAMINGLAIHGLGELAFDLLMEMER-----LSIEPD-DI 450 (634)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~-~~ 450 (634)
+..+..+|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..+++..+ . .|. ..
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~ 262 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV--PDLLPK 262 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC--GGGHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC--ChhHHH
Confidence 77888999999999999999987652 12 24688899999999999999999999876 4 233 56
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC---hhHHHHHHHHHhccCC---HHHHHHHHHhCCCCCCH-HHHHHH
Q 047120 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE---LQHYGCMVDILGRAGH---IEAARNLIEDMPMEPND-VIWRTL 523 (634)
Q Consensus 451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l 523 (634)
++..+...+.+.|++++|...++++.+...-..+ ...+..+...|...|+ +++|+..+++.+..|+. ..+..+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~l 342 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 8888999999999999999999998874322122 3346777778888898 99999999997544443 466778
Q ss_pred HHHHHhcCChhHHHHHHHHHhcc
Q 047120 524 LSACRNYENLNVGEPVAKHLIGM 546 (634)
Q Consensus 524 ~~~~~~~g~~~~a~~~~~~~~~~ 546 (634)
...|...|++++|...++++++.
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 88899999999999999998754
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.29 E-value=1.2e-11 Score=119.50 Aligned_cols=239 Identities=12% Similarity=0.063 Sum_probs=147.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHhhhCCC--------C---ChhhHHHHHHHHHHcCCchHHHHHHHHHHhcC-----C
Q 047120 280 DVVSWANMIDGYAKLGRVDIARRLFDEMPK--------R---DVVACNAMMGGYVRNGYSMKALEIFDNMQCEL-----Y 343 (634)
Q Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-----~ 343 (634)
+..++..+...|...|++++|...|+++.+ . ...++..+...+...|++++|+..+++..... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 356788899999999999999999988764 2 23568888999999999999999999997541 1
Q ss_pred CCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHc------CCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhccCCChh
Q 047120 344 LHP-DDASLVIVLSAIAQLGHIDKGVAIHRYLEKD------QFSL-NGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVD 415 (634)
Q Consensus 344 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 415 (634)
-.| ....+..+...+...|++++|...++.+.+. +..+ ....+..+...+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~--------------------- 164 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ--------------------- 164 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---------------------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH---------------------
Confidence 122 3457788888889999999999999887753 1111 2233444444444
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc------Ccc
Q 047120 416 HWNAMINGLAIHGLGELAFDLLMEMERL------SIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIH------KLE 482 (634)
Q Consensus 416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~ 482 (634)
..|++++|+.+++++.+. +..|. ..++..+...+...|++++|...++.+.... ...
T Consensus 165 ----------~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 165 ----------NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp ----------TTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ----------HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 445555555554444332 11222 2355566666666677777766666665410 011
Q ss_pred cC-------hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120 483 PE-------LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549 (634)
Q Consensus 483 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (634)
+. ...+..+...+...+.+.+|...++.. ...|+ ..++..+...|...|++++|...+++++++.|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 112222333344455555566666665 23333 557888999999999999999999999987664
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=7e-11 Score=108.34 Aligned_cols=191 Identities=11% Similarity=-0.072 Sum_probs=123.1
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHHhcc---C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 047120 381 LNGKHGVALIDMYSKCGSIENAIKVFEQIE---D-GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGL 455 (634)
Q Consensus 381 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l 455 (634)
.++..+......+...|++++|+..|++.. + ++...+..+..++...|++++|+..+++..+. .|+ ...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 345666677777777777777777777664 2 45566666777777777777777777777764 454 3466777
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCcccCh-------hHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC---HHHHHHHH
Q 047120 456 LNACAHAGLVKEGLLCFELMRRIHKLEPEL-------QHYGCMVDILGRAGHIEAARNLIEDM-PMEPN---DVIWRTLL 524 (634)
Q Consensus 456 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~ 524 (634)
..++...|++++|...++.+.+... .+. ..|..+...+...|++++|++.++++ ...|+ ...|..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVP--GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 7777777777777777777766321 122 34666666777777777777777765 45555 34555555
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
..+.. .+...++++..+.+.++..|... .....+.+++|...+++..+...
T Consensus 161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 161 VLFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCC
Confidence 55543 33445566666665554444332 23344567999999999876543
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=2.6e-10 Score=100.35 Aligned_cols=168 Identities=13% Similarity=-0.038 Sum_probs=141.6
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047120 384 KHGVALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACA 460 (634)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 460 (634)
..+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. ..+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4566778888899999999999998873 366788899999999999999999999998752 335678888999999
Q ss_pred ccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHH
Q 047120 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-P-MEPNDVIWRTLLSACRNYENLNVGEP 538 (634)
Q Consensus 461 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~ 538 (634)
..|++++|...++.+.+. .+.+...+..++..+...|++++|.+.++++ . .+.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998874 2345677888999999999999999999987 2 23457788999999999999999999
Q ss_pred HHHHHhccCCCCCchH
Q 047120 539 VAKHLIGMDSSNSSSY 554 (634)
Q Consensus 539 ~~~~~~~~~p~~~~~~ 554 (634)
.++++++..|.++...
T Consensus 166 ~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 166 HFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHCCCGGG
T ss_pred HHHHHHHcCCCchhhH
Confidence 9999999988776543
No 82
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.25 E-value=6.7e-11 Score=121.16 Aligned_cols=179 Identities=14% Similarity=0.058 Sum_probs=157.2
Q ss_pred CHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHH
Q 047120 398 SIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLG-ELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCF 472 (634)
Q Consensus 398 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 472 (634)
++++++..++... ..+...|..+...|...|++ ++|++.|++..+. .|+ ...|..+..+|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566666666554 34677899999999999999 9999999999885 555 679999999999999999999999
Q ss_pred HHhHHhcCcccChhHHHHHHHHHhcc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CCh
Q 047120 473 ELMRRIHKLEPELQHYGCMVDILGRA---------GHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNY--------ENL 533 (634)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------g~~ 533 (634)
+.+.+. .|+...+..+...|... |++++|++.++++ ...| +...|..+..+|... |++
T Consensus 161 ~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 999873 57778899999999999 9999999999998 3344 477899999999888 999
Q ss_pred hHHHHHHHHHhccCC---CCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120 534 NVGEPVAKHLIGMDS---SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 534 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
++|+..++++++++| .++..|..++.+|...|++++|.+.++++.+..
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999 999999999999999999999999999997654
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.22 E-value=1.7e-09 Score=107.42 Aligned_cols=260 Identities=10% Similarity=-0.044 Sum_probs=160.4
Q ss_pred HHHHHcCChHHHHHHhhhCC----CCCh----hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCH----hHHHHHHH
Q 047120 289 DGYAKLGRVDIARRLFDEMP----KRDV----VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDD----ASLVIVLS 356 (634)
Q Consensus 289 ~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~ll~ 356 (634)
..+...|++++|...+++.. ..+. .+++.+...+...|++++|...+++......-.++. .++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445556655555554432 1111 134555566666777777777777665321111121 23445556
Q ss_pred HHHccCChHHHHHHHHHHHHc----CCC--C-chhHHHHHHHHhHhcCCHHHHHHHHHhccC--C------ChhHHHHHH
Q 047120 357 AIAQLGHIDKGVAIHRYLEKD----QFS--L-NGKHGVALIDMYSKCGSIENAIKVFEQIED--G------SVDHWNAMI 421 (634)
Q Consensus 357 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~------~~~~~~~li 421 (634)
.+...|++++|...++...+. +.. | ....+..+...+...|++++|...+++... + ....+..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 667777777777777766542 221 2 234555677777788888888888776541 1 123577778
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHhccCCHHHHHHHHHHhHHhcCccc--ChhHHHHHHH
Q 047120 422 NGLAIHGLGELAFDLLMEMERLSIEPD--DITFT----GLLNACAHAGLVKEGLLCFELMRRIHKLEP--ELQHYGCMVD 493 (634)
Q Consensus 422 ~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~ 493 (634)
..+...|++++|...+++.....-.++ ..... ..+..+...|++++|...++.......-.+ ....+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 888888999999998888765321221 11111 233446788999999999888765211111 1224567788
Q ss_pred HHhccCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047120 494 ILGRAGHIEAARNLIEDM-------PMEPND-VIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548 (634)
Q Consensus 494 ~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 548 (634)
.+...|++++|.+.+++. +..++. ..+..+..++...|+.++|...++++++..+
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 888999999999888876 111222 2556667778889999999999999987754
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.20 E-value=1.7e-10 Score=110.13 Aligned_cols=186 Identities=10% Similarity=0.009 Sum_probs=118.3
Q ss_pred HhHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHH
Q 047120 392 MYSKCGSIENAIKVFEQIED-----GS----VDHWNAMINGLAIHGLGELAFDLLMEMERLSI---EPD--DITFTGLLN 457 (634)
Q Consensus 392 ~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll~ 457 (634)
.|...|++++|...|++... .+ ..+|+.+..+|...|++++|+..+++..+... .+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555666666666554431 11 33566777777777777777777776654210 111 246777888
Q ss_pred HHhcc-CCHHHHHHHHHHhHHhcCcccC----hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCH--------HHHHHH
Q 047120 458 ACAHA-GLVKEGLLCFELMRRIHKLEPE----LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPND--------VIWRTL 523 (634)
Q Consensus 458 ~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--------~~~~~l 523 (634)
.|... |++++|+..|+++.+...-..+ ..++..++..|.+.|++++|+..++++ ...|+. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 8888888888887763211111 345778888889999999999988876 222221 156677
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCCch-----HHHHHHHHh--cCCCchHHHHHHHHH
Q 047120 524 LSACRNYENLNVGEPVAKHLIGMDSSNSSS-----YVLLSNMFA--GLGMWNDARRVRSMM 577 (634)
Q Consensus 524 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~ 577 (634)
..++...|++++|+..++++++++|..+.. +..++..+. ..+++++|+..++++
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 777888899999999999999988876553 344555554 456777888777554
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=3e-10 Score=107.68 Aligned_cols=222 Identities=12% Similarity=0.098 Sum_probs=155.4
Q ss_pred HccCChHHHHHHHHHHHHc-------CCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC-------C----ChhHHHHH
Q 047120 359 AQLGHIDKGVAIHRYLEKD-------QFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED-------G----SVDHWNAM 420 (634)
Q Consensus 359 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l 420 (634)
...|++++|+.++++..+. ..+....++..+...|...|++++|+..++++.+ + ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888777652 2233467788899999999999999999987652 1 24478889
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-----Cccc-ChhH
Q 047120 421 INGLAIHGLGELAFDLLMEMERL------SIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIH-----KLEP-ELQH 487 (634)
Q Consensus 421 i~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~-~~~~ 487 (634)
...|...|++++|...+++..+. .-.|+ ..++..+...+...|++++|..+++++.+.. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 11233 4578888899999999999999999987731 1122 3566
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhC-C---------CCCC-HHHHHHHHHHHHhcCC------hhHHHHHHHHHhccCCCC
Q 047120 488 YGCMVDILGRAGHIEAARNLIEDM-P---------MEPN-DVIWRTLLSACRNYEN------LNVGEPVAKHLIGMDSSN 550 (634)
Q Consensus 488 ~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~-~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~p~~ 550 (634)
+..+...|.+.|++++|.+.++++ . ..+. ...|..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999998876 1 1222 2234444433333333 333333333333333555
Q ss_pred CchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 551 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
+..+..++.+|...|++++|..++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 668999999999999999999999988653
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.15 E-value=4.5e-10 Score=119.69 Aligned_cols=162 Identities=15% Similarity=0.184 Sum_probs=133.0
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 047120 382 NGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLN 457 (634)
Q Consensus 382 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 457 (634)
+...++.+..+|.+.|++++|++.|++.. ..+..+|+.+..+|.+.|++++|++.|++..+. .|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 45667777778888888888888887765 335678888888899999999999999988874 565 568888999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChh
Q 047120 458 ACAHAGLVKEGLLCFELMRRIHKLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLN 534 (634)
Q Consensus 458 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 534 (634)
++...|++++|++.|+++.+. .| +...|..+..+|.+.|++++|++.|+++ .+.|+ ...+..++..+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999988873 34 4677889999999999999999999987 55565 678889999999999999
Q ss_pred HHHHHHHHHhccCC
Q 047120 535 VGEPVAKHLIGMDS 548 (634)
Q Consensus 535 ~a~~~~~~~~~~~p 548 (634)
+|.+.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999887653
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=2.4e-09 Score=102.11 Aligned_cols=201 Identities=12% Similarity=-0.008 Sum_probs=136.0
Q ss_pred HHHccCChHHHHHHHHHHHHc----CCCCc-hhHHHHHHHHhHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHH
Q 047120 357 AIAQLGHIDKGVAIHRYLEKD----QFSLN-GKHGVALIDMYSKCGSIENAIKVFEQIED-----GS----VDHWNAMIN 422 (634)
Q Consensus 357 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~ 422 (634)
.+...|++++|...+..+.+. |.++. ..++..+..+|.+.|++++|+..|++..+ .+ ..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455667777777777666542 22222 35677777777788888888777776642 11 346788888
Q ss_pred HHHHc-CChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccCh-----hHHHHH
Q 047120 423 GLAIH-GLGELAFDLLMEMERLSIE-PD----DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL-----QHYGCM 491 (634)
Q Consensus 423 ~~~~~-~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l 491 (634)
.|... |++++|+..|++..+.... .+ ..++..+...+...|++++|+..|+.+.+...-.+.. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88886 9999999999987753110 01 3468888899999999999999999988732211221 156778
Q ss_pred HHHHhccCCHHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--hcCChhHHHHHHHHHhccCCCCCchHHHH
Q 047120 492 VDILGRAGHIEAARNLIEDM-PMEPNDV------IWRTLLSACR--NYENLNVGEPVAKHLIGMDSSNSSSYVLL 557 (634)
Q Consensus 492 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 557 (634)
+.++...|++++|...+++. .+.|+.. .+..++.++. ..+++++|+..|+++++++|.....+..+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 88899999999999999987 5555522 3444555554 46778899999988888777554444333
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.09 E-value=3.4e-09 Score=96.70 Aligned_cols=181 Identities=10% Similarity=0.015 Sum_probs=113.4
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhccC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHH
Q 047120 383 GKHGVALIDMYSKCGSIENAIKVFEQIED--GS----VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD----ITF 452 (634)
Q Consensus 383 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~ 452 (634)
+..+..+...+...|++++|+..|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+. .|+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34455566667777777777777777652 22 235666777777777777777777777764 3332 134
Q ss_pred HHHHHHHhc------------------cCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhCCC
Q 047120 453 TGLLNACAH------------------AGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDMPM 513 (634)
Q Consensus 453 ~~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 513 (634)
..+..++.. .|++++|...|+.+.+. .|+ ...+...... +......
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH--------
Confidence 444444433 34455555555554432 122 1111111000 0000000
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC---chHHHHHHHHhcCCCchHHHHHHHHHHhCCCc
Q 047120 514 EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS---SSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583 (634)
Q Consensus 514 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (634)
......+...+.+.|++++|+..++++++..|.++ ..+..++.+|.+.|++++|.+.++++...+..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00113456678899999999999999999999886 57999999999999999999999999887654
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.08 E-value=2e-09 Score=100.87 Aligned_cols=184 Identities=13% Similarity=0.016 Sum_probs=112.1
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhccC--C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHHH
Q 047120 383 GKHGVALIDMYSKCGSIENAIKVFEQIED--G-S---VDHWNAMINGLAIHGLGELAFDLLMEMERLSI-EPD-DITFTG 454 (634)
Q Consensus 383 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~-~~~~~~ 454 (634)
...+..+...+.+.|++++|+..|+++.+ | + ...+..+..+|...|++++|+..|++..+... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34444455555566666666666665542 1 2 34555566666666666666666666665311 112 234555
Q ss_pred HHHHHhc--------cCCHHHHHHHHHHhHHhcCcccChhHH-----------------HHHHHHHhccCCHHHHHHHHH
Q 047120 455 LLNACAH--------AGLVKEGLLCFELMRRIHKLEPELQHY-----------------GCMVDILGRAGHIEAARNLIE 509 (634)
Q Consensus 455 ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~ 509 (634)
+..++.. .|++++|+..|+.+.+...- +.... ..+...|.+.|++++|+..|+
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 5555555 66666666666666653211 11222 456788889999999999988
Q ss_pred hC-CCCCC----HHHHHHHHHHHHhc----------CChhHHHHHHHHHhccCCCCCc---hHHHHHHHHhcCCCch
Q 047120 510 DM-PMEPN----DVIWRTLLSACRNY----------ENLNVGEPVAKHLIGMDSSNSS---SYVLLSNMFAGLGMWN 568 (634)
Q Consensus 510 ~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~ 568 (634)
++ ...|+ ...+..+..++... |++++|+..++++++..|+++. ....+..++.+.|+++
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 87 32333 44677777777755 8889999999999999998865 3444555554444443
No 90
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.08 E-value=9.9e-09 Score=92.49 Aligned_cols=173 Identities=11% Similarity=-0.089 Sum_probs=138.1
Q ss_pred HHHHHHhcc-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHhH
Q 047120 402 AIKVFEQIE-DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAG----LVKEGLLCFELMR 476 (634)
Q Consensus 402 A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~ 476 (634)
|++.|++.. ..++..+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344444443 3466777778888888889999999999888765 56677777777877 6 8999999999987
Q ss_pred HhcCcccChhHHHHHHHHHhc----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCChhHHHHHHHHHh
Q 047120 477 RIHKLEPELQHYGCMVDILGR----AGHIEAARNLIEDM-PMEPN---DVIWRTLLSACRN----YENLNVGEPVAKHLI 544 (634)
Q Consensus 477 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 544 (634)
+ .-+...+..|...|.. .+++++|++.|++. ...|. +..+..|...|.. .+++++|..+++++.
T Consensus 81 ~----~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 E----AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp H----TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred H----CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 6 2356677788888887 88999999999987 44453 7788888888887 789999999999999
Q ss_pred ccCCCCCchHHHHHHHHhcC-C-----CchHHHHHHHHHHhCCCc
Q 047120 545 GMDSSNSSSYVLLSNMFAGL-G-----MWNDARRVRSMMKERNLK 583 (634)
Q Consensus 545 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~~ 583 (634)
+. |.++..+..|+.+|... | ++++|..++++..+.|..
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 88 66778999999998754 3 899999999999887653
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.06 E-value=2.1e-08 Score=93.50 Aligned_cols=238 Identities=9% Similarity=0.009 Sum_probs=118.1
Q ss_pred HHcCChHHHHHHhhhCCCCCh-hhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHH
Q 047120 292 AKLGRVDIARRLFDEMPKRDV-VACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAI 370 (634)
Q Consensus 292 ~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 370 (634)
.-.|++..++.-...+...+. ..-.-+.+++...|++.... .-.|....+..+... ...+ ++..
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~----------~~~~~~~a~~~la~~-~~~~----a~~~ 88 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD----------PTSKLGKVLDLYVQF-LDTK----NIEE 88 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC----------SSSTTHHHHHHHHHH-HTTT----CCHH
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC----------CCCHHHHHHHHHHHH-hccc----HHHH
Confidence 345777776665555443222 22223446666666665310 112332233222222 2222 4455
Q ss_pred HHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 047120 371 HRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDG-----SVDHWNAMINGLAIHGLGELAFDLLMEMERLSI 445 (634)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 445 (634)
+++..+.+ .++......+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-- 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-- 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 55554443 333444445566666666666666666665322 3345555666666666666666666666553
Q ss_pred CC-----CHHHHHHHHHH--HhccC--CHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CC--
Q 047120 446 EP-----DDITFTGLLNA--CAHAG--LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PM-- 513 (634)
Q Consensus 446 ~p-----~~~~~~~ll~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-- 513 (634)
.| +..+...+..+ ....| ++.+|..+|+++... .|+...-..+..++.+.|++++|.+.++.+ ..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 44 23444444444 22223 666666666666542 233112222333566666666666666543 11
Q ss_pred ---------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 047120 514 ---------EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552 (634)
Q Consensus 514 ---------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 552 (634)
+.|+.++..++......|+ +|.++++++.+..|++|.
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 2234444444444444454 566666666666666554
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.06 E-value=2.1e-10 Score=97.07 Aligned_cols=141 Identities=6% Similarity=-0.076 Sum_probs=103.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC
Q 047120 422 NGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500 (634)
Q Consensus 422 ~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 500 (634)
..+...|++++|+..++..... .|+ ...+..+...|.+.|++++|++.|+++.+.. +.+...|..+..+|.+.|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCc
Confidence 3444556677777777766542 333 2355667777888888888888888877631 2346678888888888888
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHH-HHHHhccCCCCCchHHHHHHHHhcCCC
Q 047120 501 IEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPV-AKHLIGMDSSNSSSYVLLSNMFAGLGM 566 (634)
Q Consensus 501 ~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 566 (634)
+++|+..|+++ .+.|+ ..+|..+...+.+.|++++|.+. ++++++++|.++.+|...+.++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888876 44554 67888888888888988776654 589999999999999998888888775
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.06 E-value=2.3e-09 Score=100.49 Aligned_cols=169 Identities=9% Similarity=-0.048 Sum_probs=138.5
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-h
Q 047120 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD----DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-L 485 (634)
Q Consensus 411 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~ 485 (634)
..+...+..+...+.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|+..|+.+.+...-.|. .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 446677888889999999999999999999985 444 468888999999999999999999999885322222 4
Q ss_pred hHHHHHHHHHhc--------cCCHHHHHHHHHhC-CCCCC-HHHH-----------------HHHHHHHHhcCChhHHHH
Q 047120 486 QHYGCMVDILGR--------AGHIEAARNLIEDM-PMEPN-DVIW-----------------RTLLSACRNYENLNVGEP 538 (634)
Q Consensus 486 ~~~~~l~~~~~~--------~g~~~~A~~~~~~~-~~~p~-~~~~-----------------~~l~~~~~~~g~~~~a~~ 538 (634)
..+..+..++.. .|++++|+..|+++ ...|+ .... ..+...+...|++++|+.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 557778888888 99999999999987 33343 2222 556778999999999999
Q ss_pred HHHHHhccCCCCC---chHHHHHHHHhcC----------CCchHHHHHHHHHHhCC
Q 047120 539 VAKHLIGMDSSNS---SSYVLLSNMFAGL----------GMWNDARRVRSMMKERN 581 (634)
Q Consensus 539 ~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 581 (634)
.++++++..|.++ ..+..++.+|... |++++|...++++.+..
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 9999999999854 4888999999877 89999999999997653
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.05 E-value=2.7e-09 Score=88.12 Aligned_cols=127 Identities=13% Similarity=0.144 Sum_probs=76.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh
Q 047120 452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-P-MEPNDVIWRTLLSACRN 529 (634)
Q Consensus 452 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~ 529 (634)
+..+...+...|++++|..+++.+.+.. +.+...+..++..+...|++++|.+.++++ . .+.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 3344444445555555555555544321 123344445555555555555555555554 1 12335566666666777
Q ss_pred cCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 530 YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
.|++++|...++++++..|.++..+..++.++...|++++|.+.++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777777777777777777777777777777777777777776543
No 95
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.04 E-value=1.7e-09 Score=102.43 Aligned_cols=225 Identities=10% Similarity=0.007 Sum_probs=158.3
Q ss_pred HHcCCchHHHHHHHHHHhcC----C-CCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHc------CCC-CchhHHHHH
Q 047120 323 VRNGYSMKALEIFDNMQCEL----Y-LHP-DDASLVIVLSAIAQLGHIDKGVAIHRYLEKD------QFS-LNGKHGVAL 389 (634)
Q Consensus 323 ~~~g~~~~A~~~~~~m~~~~----~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~-~~~~~~~~l 389 (634)
...|++++|+.+|++..... + -.| ...++..+...+...|++++|...++.+.+. +.. ....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 45678888888887776421 1 112 3467888889999999999999999988764 222 345778889
Q ss_pred HHHhHhcCCHHHHHHHHHhccC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHH
Q 047120 390 IDMYSKCGSIENAIKVFEQIED-------G----SVDHWNAMINGLAIHGLGELAFDLLMEMERL------SIEPD-DIT 451 (634)
Q Consensus 390 ~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~ 451 (634)
..+|...|++++|...|+++.. + ....+..+...|...|++++|...+++..+. +-.|+ ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999999988752 1 2447888999999999999999999998864 11333 457
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhc------CcccC-hhHHHHHHHHHhcc------CCHHHHHHHHHhCC-CCCC-
Q 047120 452 FTGLLNACAHAGLVKEGLLCFELMRRIH------KLEPE-LQHYGCMVDILGRA------GHIEAARNLIEDMP-MEPN- 516 (634)
Q Consensus 452 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~-~~~~~~l~~~~~~~------g~~~~A~~~~~~~~-~~p~- 516 (634)
+..+...+...|++++|..+++.+.+.. ...+. ...+..+...+... ..+..+...++... ..|+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8889999999999999999999987631 11222 23344444444332 33455555555553 2233
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047120 517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547 (634)
Q Consensus 517 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 547 (634)
..++..+...|...|++++|...++++++..
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 4578888999999999999999999998753
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.00 E-value=6.9e-09 Score=98.48 Aligned_cols=175 Identities=8% Similarity=-0.054 Sum_probs=138.6
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047120 399 IENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRR 477 (634)
Q Consensus 399 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 477 (634)
.+.....+......+...+..+...+.+.|++++|...|++..+. .|+ ...+..+...+...|++++|...++.+..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 334445555555555667777888888999999999999998875 564 56888888999999999999999998876
Q ss_pred hcCcccChhHH-HHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--Cc
Q 047120 478 IHKLEPELQHY-GCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN--SS 552 (634)
Q Consensus 478 ~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~ 552 (634)
. .|+.... ......+.+.++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|.+ +.
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 3 4554332 23333466778888888888877 3344 57788999999999999999999999999999988 78
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120 553 SYVLLSNMFAGLGMWNDARRVRSMMK 578 (634)
Q Consensus 553 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 578 (634)
.+..++.+|...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999999999988764
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.00 E-value=5.5e-08 Score=90.68 Aligned_cols=159 Identities=9% Similarity=-0.028 Sum_probs=66.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCccc-----ChhHHHH
Q 047120 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP-----ELQHYGC 490 (634)
Q Consensus 417 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~ 490 (634)
+..+..++...|++++|++++.+.+..|-.++ ...+..++..+.+.|+.+.|.+.++.|.+. .| +..+...
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHHHHH
Confidence 33444444555555555555554443321112 234444444555555555555555554431 22 1222222
Q ss_pred HHHH--HhccC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc----------CCCCCchHH
Q 047120 491 MVDI--LGRAG--HIEAARNLIEDM-PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGM----------DSSNSSSYV 555 (634)
Q Consensus 491 l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~p~~~~~~~ 555 (634)
|+.+ ....| ++.+|..+|+++ ...|+..+-..++.++.+.|++++|++.++.+.+. +|.++.++.
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La 259 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA 259 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence 3222 11112 455555555554 22233122222222444455555555555544443 244444444
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 556 LLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 556 ~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
.++.+....|+ +|.++++++.+.
T Consensus 260 N~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 260 NQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHhCh--HHHHHHHHHHHh
Confidence 44444444443 444555544443
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.00 E-value=1.5e-09 Score=116.26 Aligned_cols=168 Identities=11% Similarity=0.019 Sum_probs=100.8
Q ss_pred HccCChHHHHHHHHHHH--------HcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHc
Q 047120 359 AQLGHIDKGVAIHRYLE--------KDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIH 427 (634)
Q Consensus 359 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 427 (634)
...|++++|+..++.+. +. .+.+...+..+..++...|++++|++.|+++. ..+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 56677777777777666 22 23345566666666677777777777766655 23555666666666677
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHH
Q 047120 428 GLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARN 506 (634)
Q Consensus 428 ~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 506 (634)
|++++|++.|++..+. .|+ ...+..+..++.+.|++++ +..|+++.+.. +.+...|..+..+|.+.|++++|++
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777766653 343 4566666666666677666 66666665521 2234556666666667777777777
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 047120 507 LIEDM-PMEPN-DVIWRTLLSACRNYEN 532 (634)
Q Consensus 507 ~~~~~-~~~p~-~~~~~~l~~~~~~~g~ 532 (634)
.|+++ ...|+ ...+..+..++...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 66666 44555 3455555555544443
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.96 E-value=1.7e-08 Score=83.12 Aligned_cols=131 Identities=12% Similarity=0.128 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHH
Q 047120 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495 (634)
Q Consensus 416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 495 (634)
.|..++..+...|++++|..+++++.+.. ..+...+..+...+...|++++|..+++.+.... +.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 46667778888888888888888887652 2346677778888888888999998888887631 33456777888888
Q ss_pred hccCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047120 496 GRAGHIEAARNLIEDM-P-MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS 549 (634)
Q Consensus 496 ~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (634)
.+.|++++|.+.++++ . .+.+...+..++..+...|++++|...++++++.+|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8999999999888887 2 2345677888888899999999999999999888775
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.95 E-value=1e-09 Score=92.81 Aligned_cols=123 Identities=7% Similarity=-0.021 Sum_probs=102.7
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 047120 455 LLNACAHAGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYE 531 (634)
Q Consensus 455 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 531 (634)
|...+...|++++|+..++.... ..|+ ...+..+...|.+.|++++|++.|+++ .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 45566778999999999998765 2343 455678999999999999999999998 4455 4779999999999999
Q ss_pred ChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHH-HHHHHhC
Q 047120 532 NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV-RSMMKER 580 (634)
Q Consensus 532 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~ 580 (634)
++++|+..++++++++|.++.++..++.+|.+.|++++|.+. ++++.+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887665 5777654
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.93 E-value=6.7e-09 Score=90.59 Aligned_cols=155 Identities=7% Similarity=-0.018 Sum_probs=94.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHH-Hhc
Q 047120 420 MINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI-LGR 497 (634)
Q Consensus 420 li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 497 (634)
+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|+..++.+... .|+...+..+... +.+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHh
Confidence 344444555555555555554432 232 334555555555555555555555555432 2222222111111 111
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--CchHHHHHHHHhcCCCchHHHHH
Q 047120 498 AGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN--SSSYVLLSNMFAGLGMWNDARRV 573 (634)
Q Consensus 498 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~ 573 (634)
.+...+|+..+++. ...| +...+..+...+...|++++|+..++++++.+|.. +..+..++.++...|+.++|...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 12223356666655 3345 47788888888999999999999999999999865 55889999999999999999999
Q ss_pred HHHHHh
Q 047120 574 RSMMKE 579 (634)
Q Consensus 574 ~~~~~~ 579 (634)
+++...
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
No 102
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.89 E-value=6.3e-09 Score=87.41 Aligned_cols=100 Identities=9% Similarity=0.003 Sum_probs=86.9
Q ss_pred ccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHH
Q 047120 482 EPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558 (634)
Q Consensus 482 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 558 (634)
.|+ ...+..+...+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..|+++++++|.++..|..++
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg 111 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTG 111 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 443 556778888899999999999999887 4444 5778899999999999999999999999999999999999999
Q ss_pred HHHhcCCCchHHHHHHHHHHhCC
Q 047120 559 NMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
.+|.+.|++++|+..|++..+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999987754
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.88 E-value=3.2e-08 Score=88.83 Aligned_cols=129 Identities=8% Similarity=-0.053 Sum_probs=97.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHh
Q 047120 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILG 496 (634)
Q Consensus 418 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 496 (634)
+.+..+|...|++++|+..|++..+. .|+ ...+..+..++...|++++|...|+++.+.. +.+...+..+..+|.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence 33888899999999999999999875 554 6688899999999999999999999998741 334677888888887
Q ss_pred ccCC--HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047120 497 RAGH--IEAARNLIEDMP-MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN 550 (634)
Q Consensus 497 ~~g~--~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (634)
..|+ .+.+...++... ..|....+.....++...|++++|+..|+++++++|.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6654 445666666663 22333345555666777899999999999999999863
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.88 E-value=6.7e-08 Score=92.73 Aligned_cols=220 Identities=10% Similarity=-0.007 Sum_probs=154.8
Q ss_pred HcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 047120 324 RNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAI 403 (634)
Q Consensus 324 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 403 (634)
..|++++|.+++++..+.. +.. + +...++++.|...|..+ ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~--~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL--KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc--ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3577888999998887541 111 0 11146777777776654 45677788888888
Q ss_pred HHHHhccC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCCHHHHH
Q 047120 404 KVFEQIED-----GS----VDHWNAMINGLAIHGLGELAFDLLMEMERLS---IEPD--DITFTGLLNACAHAGLVKEGL 469 (634)
Q Consensus 404 ~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~g~~~~a~ 469 (634)
..|.+... .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 88876642 11 3478888899999999999999998866431 1222 3478888889988 9999999
Q ss_pred HHHHHhHHhcCccc----ChhHHHHHHHHHhccCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCChhHHH
Q 047120 470 LCFELMRRIHKLEP----ELQHYGCMVDILGRAGHIEAARNLIEDM-PM---EPN----DVIWRTLLSACRNYENLNVGE 537 (634)
Q Consensus 470 ~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~ 537 (634)
..|+++.....-.. ...++..+...|.+.|++++|++.++++ .+ .++ ...+..++..+...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999876321111 1456888999999999999999999887 21 122 225666677778889999999
Q ss_pred HHHHHHhccCCCCCch-----HHHHHHHHhcCCCchHHHH
Q 047120 538 PVAKHLIGMDSSNSSS-----YVLLSNMFAGLGMWNDARR 572 (634)
Q Consensus 538 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 572 (634)
..+++++ ..|..+.. ...++..+ ..|+.+.+.+
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999999 88876543 33445545 5677666655
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.87 E-value=1.8e-08 Score=106.09 Aligned_cols=159 Identities=13% Similarity=0.041 Sum_probs=125.4
Q ss_pred cCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHH
Q 047120 396 CGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLC 471 (634)
Q Consensus 396 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 471 (634)
.|++++|++.|++..+ .+...|..+...|...|++++|.+.+++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998863 35678999999999999999999999999975 554 67899999999999999999999
Q ss_pred HHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHHhcc
Q 047120 472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNY---ENLNVGEPVAKHLIGM 546 (634)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 546 (634)
++++.+.. +.+...+..+..+|.+.|++++|.+.++++ ...| +...+..+...+... |++++|...++++++.
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998742 334678899999999999999999999987 3344 477888899999999 9999999999999999
Q ss_pred CCCCCchHHHHH
Q 047120 547 DSSNSSSYVLLS 558 (634)
Q Consensus 547 ~p~~~~~~~~l~ 558 (634)
+|.+...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999998888777
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.86 E-value=9.1e-08 Score=102.52 Aligned_cols=182 Identities=12% Similarity=0.020 Sum_probs=114.9
Q ss_pred HHcCCchHHHHHHHHHHh-----cCCCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047120 323 VRNGYSMKALEIFDNMQC-----ELYLHP-DDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC 396 (634)
Q Consensus 323 ~~~g~~~~A~~~~~~m~~-----~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 396 (634)
...|++++|++.+++... .....| +...+..+..++...|++++|+..++.+.+.. +.+...+..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 566777777777777761 001223 33556666667777777777777777776653 33556666777777777
Q ss_pred CCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHH
Q 047120 397 GSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCF 472 (634)
Q Consensus 397 ~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 472 (634)
|++++|++.|+++. ..+...|..+..+|.+.|++++ ++.|++..+. .|+ ...|..+..++.+.|++++|+..|
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777777665 2355567777777777777777 7777777664 443 456777777777777777777777
Q ss_pred HHhHHhcCcccC-hhHHHHHHHHHhccCC--------HHHHHHHHHhC
Q 047120 473 ELMRRIHKLEPE-LQHYGCMVDILGRAGH--------IEAARNLIEDM 511 (634)
Q Consensus 473 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~--------~~~A~~~~~~~ 511 (634)
+++.+ +.|+ ...+..+..++...|+ +++|.+.+..+
T Consensus 558 ~~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 558 DEVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HTSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred Hhhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 77654 2343 4456666666655443 55555555555
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.85 E-value=1.6e-08 Score=82.25 Aligned_cols=114 Identities=10% Similarity=0.010 Sum_probs=78.5
Q ss_pred CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHH
Q 047120 445 IEPDD-ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWR 521 (634)
Q Consensus 445 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 521 (634)
+.|+. ..+......+.+.|++++|+..|+++.+.. +.+...|..+..+|.+.|++++|++.++++ .+.| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 44543 356666777777777777777777776531 234566777777777777777777777766 3333 356777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 047120 522 TLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560 (634)
Q Consensus 522 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 560 (634)
.+..++...|++++|+..|+++++++|.++.++..|+.+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 777777777788888888888877777777777766654
No 108
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.84 E-value=7.9e-08 Score=91.61 Aligned_cols=164 Identities=7% Similarity=-0.065 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC----hh
Q 047120 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDD-----ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE----LQ 486 (634)
Q Consensus 416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~ 486 (634)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...++.+.....-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455677788889999999998887765322111 12344556677888999999999888752211112 34
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC------CC
Q 047120 487 HYGCMVDILGRAGHIEAARNLIEDM----PMEPN-----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS------NS 551 (634)
Q Consensus 487 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 551 (634)
+|+.++..|...|++++|+..++++ ...|+ ..++..+...|...|++++|...++++++..+. .+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999998876 11222 257888899999999999999999999877532 14
Q ss_pred chHHHHHHHHhcCCCchHH-HHHHHHHHh
Q 047120 552 SSYVLLSNMFAGLGMWNDA-RRVRSMMKE 579 (634)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 579 (634)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5788999999999999999 777887754
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.84 E-value=1.3e-08 Score=82.91 Aligned_cols=101 Identities=14% Similarity=0.196 Sum_probs=90.4
Q ss_pred cccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHH
Q 047120 481 LEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLL 557 (634)
Q Consensus 481 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 557 (634)
+.|+ ...+...+..|.+.|++++|++.|+++ ...| +...|..+..++.+.|++++|+..++++++++|.++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 456788899999999999999999987 4444 578999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCchHHHHHHHHHHhCC
Q 047120 558 SNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 558 ~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
+.+|...|++++|++.+++..+..
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999997653
No 110
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.83 E-value=3.5e-07 Score=87.06 Aligned_cols=161 Identities=8% Similarity=-0.039 Sum_probs=121.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC----hhHHH
Q 047120 419 AMINGLAIHGLGELAFDLLMEMERLSI-EPDDI----TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE----LQHYG 489 (634)
Q Consensus 419 ~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ 489 (634)
..+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|+..++.+.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999998876421 22211 2334666777888999999999998873222223 23688
Q ss_pred HHHHHHhccCCHHHHHHHHHhC-----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------CchH
Q 047120 490 CMVDILGRAGHIEAARNLIEDM-----PMEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN------SSSY 554 (634)
Q Consensus 490 ~l~~~~~~~g~~~~A~~~~~~~-----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 554 (634)
.++..|...|++++|+..++++ ..+.+ ..++..+...|.+.|++++|...++++++..+.. +.+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8999999999999999988876 11112 2377888899999999999999999999876332 5589
Q ss_pred HHHHHHHhcCCC-chHHHHHHHHHHh
Q 047120 555 VLLSNMFAGLGM-WNDARRVRSMMKE 579 (634)
Q Consensus 555 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 579 (634)
..++.+|.+.|+ +++|.+.++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 5999999988854
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.83 E-value=6.4e-08 Score=87.26 Aligned_cols=127 Identities=10% Similarity=-0.102 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHH
Q 047120 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495 (634)
Q Consensus 416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 495 (634)
.+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|...++.+.... +.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHH
Confidence 34455556666666666666666552 4455666666666666666666666666665521 22344555666666
Q ss_pred hccCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047120 496 GRAGHIEAARNLIEDM-PMEP-N----------------DVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548 (634)
Q Consensus 496 ~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 548 (634)
...|++++|++.++++ ...| + ...+..+..++...|++++|...++++++..|
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 6666666666666555 1111 1 14555555566666666666666666665554
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.82 E-value=5.9e-08 Score=102.15 Aligned_cols=146 Identities=10% Similarity=-0.025 Sum_probs=109.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHH
Q 047120 361 LGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLL 437 (634)
Q Consensus 361 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~ 437 (634)
.|++++|...++++.+.. +.+...+..+...+...|++++|.+.|++..+ .+...|..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999887753 44678888999999999999999999998763 35678999999999999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhcc---CCHHHHHHHHHhC
Q 047120 438 MEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA---GHIEAARNLIEDM 511 (634)
Q Consensus 438 ~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 511 (634)
++..+. .|+ ...+..+..++...|++++|.+.++++.+.. +.+...+..+..++... |++++|.+.++++
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 999875 454 6788999999999999999999999998742 23467788899999999 9999999999887
No 113
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.81 E-value=6.1e-07 Score=91.67 Aligned_cols=366 Identities=10% Similarity=-0.024 Sum_probs=207.2
Q ss_pred ccC-ChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhCCC-hHHHHH
Q 047120 131 RLG-LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI--RDSVSYNSMIDGYVKSGN-IESARE 206 (634)
Q Consensus 131 ~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~ 206 (634)
+.| +++.|+.+|+.+.+.- |. |+++.+..+|++... |++..|...+.-..+.+. .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 345 4777888888776642 22 889999999998764 788888888877776653 344556
Q ss_pred HHhhCccC----CCChhHHHHHHHHHHh----cCCcHHHHHHHHhhCCC-CCchHHHHHHHHHH---hcCChHHHHHHHh
Q 047120 207 LFDSMPIR----ERNLISWNSVLNGYAQ----LKSGLQFAWQIFEKMPE-RDLISWNSMLHGCV---KCGKMDDAQALFD 274 (634)
Q Consensus 207 ~~~~m~~~----~p~~~~~~~ll~~~~~----~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~---~~g~~~~A~~~~~ 274 (634)
+|+..... ..+...|...+.-+.. .++ ++.+..+|++... |.. .+..+-..|. ...+...+..++.
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~-~~~vR~iy~rAL~~P~~-~~~~lw~~Y~~fE~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR-IEKIRNGYMRALQTPMG-SLSELWKDFENFELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH-HHHHHHHHHHHHTSCCT-THHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH-HHHHHHHHHHHHhChhh-hHHHHHHHHHHHHHHhccccHHHHHH
Confidence 66655542 3455666666655432 234 7778888888766 321 1122222221 1111222222222
Q ss_pred hCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCC----CChhhHHHHHHHHHHcC--C-----chHHHHHHHHHHhcCC
Q 047120 275 KMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPK----RDVVACNAMMGGYVRNG--Y-----SMKALEIFDNMQCELY 343 (634)
Q Consensus 275 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g--~-----~~~A~~~~~~m~~~~~ 343 (634)
+ . .+.+..|..+++.+.. .+...|...+.--...+ - .+.+..+|+++...
T Consensus 148 ~---------------~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-- 208 (493)
T 2uy1_A 148 D---------------T--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-- 208 (493)
T ss_dssp H---------------H--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--
T ss_pred H---------------H--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc--
Confidence 1 1 0122223322222211 13345555444322221 1 23467788888754
Q ss_pred CCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHH-HHHHHhcc------------
Q 047120 344 LHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENA-IKVFEQIE------------ 410 (634)
Q Consensus 344 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~------------ 410 (634)
.+.+...|...+.-+.+.|+.+.|..+++.+... +.+...+... ....+.++. ..+.+...
T Consensus 209 ~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y----~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 209 FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYY----GLVMDEEAVYGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHH----HHHTTCTHHHHHHHHHTC----------CH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHH----HhhcchhHHHHHHHHHHHhhccchhhhhcc
Confidence 2334566777777777888999999999988887 4444333322 221111111 11221110
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhHHhcCcccChhHHH
Q 047120 411 DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAH-AGLVKEGLLCFELMRRIHKLEPELQHYG 489 (634)
Q Consensus 411 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 489 (634)
......|...+..+.+.++.+.|..+|++. .. ...+...|......-.. .++.+.|..+|+...+..+ .+...+.
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~ 358 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHH
Confidence 011235666777777778889999999888 32 12233444432222222 2368889999998887432 2344566
Q ss_pred HHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047120 490 CMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIG 545 (634)
Q Consensus 490 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 545 (634)
..++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.+
T Consensus 359 ~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 359 EFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67777788899999999999873 3567788777777778898888888888774
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.80 E-value=8.4e-08 Score=87.36 Aligned_cols=185 Identities=14% Similarity=0.038 Sum_probs=132.6
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-C-chhHHHHHHHHhHhcCCHHHHHHHHHhccC--C-Chh---HHHH
Q 047120 348 DASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFS-L-NGKHGVALIDMYSKCGSIENAIKVFEQIED--G-SVD---HWNA 419 (634)
Q Consensus 348 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~---~~~~ 419 (634)
...+..+...+...|++++|+..|+.+.+.... + ....+..+..+|.+.|++++|+..|+++.+ | +.. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 345556677788999999999999999986422 1 245778889999999999999999999862 3 222 4556
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 047120 420 MINGLAI------------------HGLGELAFDLLMEMERLSIEPDDI-TFTGLLNACAHAGLVKEGLLCFELMRRIHK 480 (634)
Q Consensus 420 li~~~~~------------------~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 480 (634)
+..++.. .|++++|+..|+++.+. .|+.. .+.... .+..+...
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~--------------~l~~~~~~-- 145 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK--------------RLVFLKDR-- 145 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH--------------HHHHHHHH--
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH--------------HHHHHHHH--
Confidence 6666654 56899999999999975 56543 222111 11111110
Q ss_pred cccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCch
Q 047120 481 LEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS 553 (634)
Q Consensus 481 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 553 (634)
.......+...|.+.|++++|+..|+++ ...|+ ...+..+..++.+.|+.++|+..++++....|.+...
T Consensus 146 ---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 146 ---LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ---HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 0112235678889999999999999987 33344 2467888889999999999999999999888876553
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.79 E-value=2.4e-07 Score=83.35 Aligned_cols=174 Identities=9% Similarity=-0.108 Sum_probs=120.8
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccC-CChhHHHHHHHHHHHcC----ChHHHHHHHHHHH
Q 047120 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIED-GSVDHWNAMINGLAIHG----LGELAFDLLMEME 441 (634)
Q Consensus 367 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~----~~~~A~~~~~~m~ 441 (634)
|...|+...+.| ++..+..+...|...+++++|+..|++..+ .++..+..|...|.. + ++++|+..|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444555555443 455566666666667777777777766553 355666667777666 5 7888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCcc-cChhHHHHHHHHHhc----cCCHHHHHHHHHhC-
Q 047120 442 RLSIEPDDITFTGLLNACAH----AGLVKEGLLCFELMRRIHKLE-PELQHYGCMVDILGR----AGHIEAARNLIEDM- 511 (634)
Q Consensus 442 ~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~- 511 (634)
+.| +...+..+...|.. .+++++|+.+|+++.+ .+.. .....+..|...|.. .+++++|++.|++.
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 654 56677777777776 7888889888888876 2211 115677778888877 78899999998887
Q ss_pred CCCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHhccCC
Q 047120 512 PMEPNDVIWRTLLSACRNY-E-----NLNVGEPVAKHLIGMDS 548 (634)
Q Consensus 512 ~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~p 548 (634)
...++...+..|...|... | ++++|..+++++.+.+.
T Consensus 157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 3335566777777777543 3 89999999999888764
No 116
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.77 E-value=1.5e-08 Score=85.25 Aligned_cols=96 Identities=10% Similarity=0.041 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120 485 LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA 562 (634)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (634)
...+..+...+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..++++++++|.++..+..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 445666777777788888888777776 2233 56677777777888888888888888888888888888888888888
Q ss_pred cCCCchHHHHHHHHHHhC
Q 047120 563 GLGMWNDARRVRSMMKER 580 (634)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~ 580 (634)
..|++++|.+.+++..+.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888888888777654
No 117
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.77 E-value=8.9e-08 Score=83.32 Aligned_cols=156 Identities=14% Similarity=0.056 Sum_probs=113.2
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hh
Q 047120 385 HGVALIDMYSKCGSIENAIKVFEQIED---GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNA-CA 460 (634)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~ 460 (634)
....+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..+++.... .|+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 344566677888888888888888763 46667888888888889999999888887654 3444333222211 11
Q ss_pred ccCCHHHHHHHHHHhHHhcCccc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChhH
Q 047120 461 HAGLVKEGLLCFELMRRIHKLEP-ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN---DVIWRTLLSACRNYENLNV 535 (634)
Q Consensus 461 ~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~ 535 (634)
..+...+|...++.+.+. .| +...+..+...+...|++++|...++++ ...|+ ...+..+...+...|+.++
T Consensus 86 ~~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 222223467788887763 34 4677888999999999999999999887 55554 5578888889999999999
Q ss_pred HHHHHHHHhc
Q 047120 536 GEPVAKHLIG 545 (634)
Q Consensus 536 a~~~~~~~~~ 545 (634)
|...|++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988763
No 118
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.76 E-value=3.3e-07 Score=82.16 Aligned_cols=185 Identities=15% Similarity=0.016 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047120 314 ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS-LVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDM 392 (634)
Q Consensus 314 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 392 (634)
.+......+...|++++|+..|++.... .|+... +.. . ..... ..........+..+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~-~---~~~~~---------------~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYW-T---NVDKN---------------SEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHH-H---HSCTT---------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHH-h---hhcch---------------hhhhHHHHHHHHHH
Confidence 3444556677888888888888888743 554322 211 0 00000 01112233447778
Q ss_pred hHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC--HH
Q 047120 393 YSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGL--VK 466 (634)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~--~~ 466 (634)
|.+.|++++|+..|++.. +.++..|..+...|...|++++|+..|++..+. .|+ ...+..+..++...|+ ..
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHH
Confidence 888888888888888775 346678888888899999999999999988874 565 5677777777765543 34
Q ss_pred HHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 047120 467 EGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRTLLS 525 (634)
Q Consensus 467 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 525 (634)
.+...++.+.. ..|....+.....++...|++++|+..|+++ ...|+......+..
T Consensus 142 ~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 142 KLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44555554432 1222333444566677788999999999887 77788665554443
No 119
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.76 E-value=1.8e-06 Score=81.49 Aligned_cols=217 Identities=14% Similarity=0.130 Sum_probs=106.2
Q ss_pred CchHHHHHHHHHHhcCCCCCCH-hHHHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCchhHHHHHHHHh----HhcCCH
Q 047120 327 YSMKALEIFDNMQCELYLHPDD-ASLVIVLSAIAQLG--HIDKGVAIHRYLEKDQFSLNGKHGVALIDMY----SKCGSI 399 (634)
Q Consensus 327 ~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~ 399 (634)
..++|++++..+.. +.|+. ..|+.--..+...+ ++++++.+++.++... +-+..+++.-...+ ...+
T Consensus 48 ~s~~aL~~t~~~L~---~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~-- 121 (306)
T 3dra_A 48 YSERALHITELGIN---ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN-- 121 (306)
T ss_dssp CSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT--
T ss_pred CCHHHHHHHHHHHH---HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc--
Confidence 33567777777763 35543 34455555555555 6666666666665543 12223333222222 2220
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHH--HHHHHHHHhH
Q 047120 400 ENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEP-DDITFTGLLNACAHAGLVK--EGLLCFELMR 476 (634)
Q Consensus 400 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~ 476 (634)
..+++++++++++++.+. .| +..+|..-...+.+.|.++ +++..++.+.
T Consensus 122 --------------------------~~~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i 173 (306)
T 3dra_A 122 --------------------------NDFDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVI 173 (306)
T ss_dssp --------------------------TCCCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred --------------------------ccCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence 003455555555555543 22 2334444444444444444 5555555555
Q ss_pred HhcCcccChhHHHHHHHHHhccCC------HHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHhccC
Q 047120 477 RIHKLEPELQHYGCMVDILGRAGH------IEAARNLIEDM-P-MEPNDVIWRTLLSACRNYEN-LNVGEPVAKHLIGMD 547 (634)
Q Consensus 477 ~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~ 547 (634)
+.. +-+...|+.-..++.+.|+ ++++++.++++ . .+-|...|+.+...+.+.|+ .+....+.+++++.+
T Consensus 174 ~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 251 (306)
T 3dra_A 174 DTD--LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE 251 (306)
T ss_dssp HHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG
T ss_pred HhC--CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 421 1233334444444444443 55555555554 1 22345555555555555554 233444555555544
Q ss_pred ---CCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 548 ---SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 548 ---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
|.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 252 ~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 252 KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 55555666666666666666666666666653
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.72 E-value=1.1e-07 Score=81.77 Aligned_cols=127 Identities=6% Similarity=-0.041 Sum_probs=99.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 047120 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PME-PNDVIWRTLLSACR 528 (634)
Q Consensus 451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~ 528 (634)
.+..+...+...|++++|...++.+.+.. +.+...+..++.++...|++++|.+.+++. ... .+...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 55666667777888888888888776631 234667777888888888888888888876 323 35678888888999
Q ss_pred hcCChhHHHHHHHHHhccCCCCCchHHHHHHH--HhcCCCchHHHHHHHHHHh
Q 047120 529 NYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM--FAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 579 (634)
..|++++|...++++++.+|.++..+..+..+ +.+.|++++|++.+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999998888555544 7888999999999987754
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.72 E-value=3.4e-06 Score=79.49 Aligned_cols=232 Identities=7% Similarity=-0.043 Sum_probs=158.5
Q ss_pred HHcCChHHHHHHhhhCCC--C-ChhhHHHHHHHHHHcC--CchHHHHHHHHHHhcCCCCCCH-hHHHHHHHHH----Hcc
Q 047120 292 AKLGRVDIARRLFDEMPK--R-DVVACNAMMGGYVRNG--YSMKALEIFDNMQCELYLHPDD-ASLVIVLSAI----AQL 361 (634)
Q Consensus 292 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~----~~~ 361 (634)
.+....++|+..++.+.. | +..+|+.-...+...| +++++++.++.+... .|.. ..|+.-...+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~---nPk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 44 KAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD---NEKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH---CTTCCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH---CcccHHHHHHHHHHHHHHHHhc
Confidence 334445789999998875 3 4567888888888888 999999999999965 4543 3444433333 333
Q ss_pred ---CChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChH--HHHHH
Q 047120 362 ---GHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGE--LAFDL 436 (634)
Q Consensus 362 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~A~~~ 436 (634)
++++++..+++.+.+.. ..+..+|+.-.-.+.+.|.++ ++++.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~--------------------------------pkny~aW~~R~~vl~~l~~~~~~~EL~~ 168 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD--------------------------------PKNHHVWSYRKWLVDTFDLHNDAKELSF 168 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhC--------------------------------CCCHHHHHHHHHHHHHhcccChHHHHHH
Confidence 45666666666555532 223444444444555556655 77777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCC------HHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHH-HHHHHH
Q 047120 437 LMEMERLSIEPDDITFTGLLNACAHAGL------VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA-ARNLIE 509 (634)
Q Consensus 437 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~ 509 (634)
++++.+.. .-|...|+.....+...+. ++++++.++.+... .+-|...|+.+...+.+.|+..+ +.++..
T Consensus 169 ~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~ 245 (306)
T 3dra_A 169 VDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSL 245 (306)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHH
Confidence 77777653 2245566666656666665 88888888888763 23456678888888888887544 455666
Q ss_pred hC-CC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc-cCCCCCchHHHHHHHH
Q 047120 510 DM-PM----EPNDVIWRTLLSACRNYENLNVGEPVAKHLIG-MDSSNSSSYVLLSNMF 561 (634)
Q Consensus 510 ~~-~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~ 561 (634)
+. .. ..+...+..++..+.+.|+.++|.++++++.+ .+|.....|...+..+
T Consensus 246 ~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~l 303 (306)
T 3dra_A 246 QFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISKL 303 (306)
T ss_dssp TTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHTC
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhhc
Confidence 65 22 34678888999999999999999999999996 7999888887766543
No 122
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.70 E-value=6e-08 Score=93.07 Aligned_cols=197 Identities=7% Similarity=-0.077 Sum_probs=149.5
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 047120 360 QLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLME 439 (634)
Q Consensus 360 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 439 (634)
..|++++|..++++..+..-. . .+...+++++|...|.+ ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 357788899988887764211 1 11115788888888765 35678899999999999988
Q ss_pred HHHCCC---CCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---Cccc-ChhHHHHHHHHHhccCCHHHHHHHHHh
Q 047120 440 MERLSI---EPD--DITFTGLLNACAHAGLVKEGLLCFELMRRIH---KLEP-ELQHYGCMVDILGRAGHIEAARNLIED 510 (634)
Q Consensus 440 m~~~g~---~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 510 (634)
..+... .+. ..+|..+...|...|++++|+..++++.... +-.. ...++..+...|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 765311 111 3478889999999999999999999887632 1111 14568889999998 999999999988
Q ss_pred C-CCC---CC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc------hHHHHHHHHhcCCCchHHHHHHHH
Q 047120 511 M-PME---PN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS------SYVLLSNMFAGLGMWNDARRVRSM 576 (634)
Q Consensus 511 ~-~~~---p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~ 576 (634)
. .+. .+ ..++..+...+...|++++|+..++++++..|.+.. .+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 111 11 457888899999999999999999999998765432 667778888899999999999999
Q ss_pred HH
Q 047120 577 MK 578 (634)
Q Consensus 577 ~~ 578 (634)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 97
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.69 E-value=7.6e-07 Score=80.09 Aligned_cols=131 Identities=5% Similarity=-0.138 Sum_probs=108.7
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 047120 386 GVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLV 465 (634)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 465 (634)
+..+...+...|++++|+..|++..+++...|..+...|...|++++|+..+++..+.. ..+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44567778889999999999999988888899999999999999999999999988752 23467888999999999999
Q ss_pred HHHHHHHHHhHHhcCc-------------cc-ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCH
Q 047120 466 KEGLLCFELMRRIHKL-------------EP-ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPND 517 (634)
Q Consensus 466 ~~a~~~~~~~~~~~~~-------------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 517 (634)
++|...++.+.+...- .| ....+..+..+|.+.|++++|.+.++++ ...|+.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999998873211 11 1267888999999999999999999987 666654
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.67 E-value=2e-07 Score=75.42 Aligned_cols=115 Identities=14% Similarity=0.133 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 047120 449 DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-P-MEPNDVIWRTLLSA 526 (634)
Q Consensus 449 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 526 (634)
...+..+...+...|++++|..+++.+.+.. +.+...+..++..+.+.|++++|...++++ . .+.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 3466667777777888888888887776631 234566777788888888888888888776 2 23456778888888
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCC
Q 047120 527 CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565 (634)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 565 (634)
+...|++++|...++++++..|.++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 899999999999999999999998888888888876544
No 125
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.67 E-value=2.8e-07 Score=84.76 Aligned_cols=183 Identities=13% Similarity=0.014 Sum_probs=120.3
Q ss_pred hcCCHHHHHHHHHhccC---CChhHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCC----------------
Q 047120 395 KCGSIENAIKVFEQIED---GSVDHWNAM-------INGLAIHGLGELAFDLLMEMERLSIEPD---------------- 448 (634)
Q Consensus 395 ~~~~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~~~~~~A~~~~~~m~~~g~~p~---------------- 448 (634)
..++...|.+.|.++.. .....|..+ ...+.+.++..+++..+.+-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 45677777777776652 234466666 4555555555555555555443 2222
Q ss_pred ------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCH----H
Q 047120 449 ------DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPND----V 518 (634)
Q Consensus 449 ------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 518 (634)
......+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|++....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123334556677788888888888777642 343335556666788888888888888876333332 3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccC--CC-CCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 519 IWRTLLSACRNYENLNVGEPVAKHLIGMD--SS-NSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
.+..+..++...|++++|+..|+++.... |. .+......+.++.+.|+.++|...|+++.....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 56777778888888888888888887543 33 345777888888888888888888888876544
No 126
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.67 E-value=8.6e-08 Score=79.99 Aligned_cols=96 Identities=10% Similarity=-0.010 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120 485 LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA 562 (634)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (634)
...+..+...+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..++++++++|.++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344555666677777777777777765 2233 45666777777777777777777777777777777777777777777
Q ss_pred cCCCchHHHHHHHHHHhC
Q 047120 563 GLGMWNDARRVRSMMKER 580 (634)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~ 580 (634)
..|++++|.+.+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777776554
No 127
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.67 E-value=1e-06 Score=83.48 Aligned_cols=82 Identities=7% Similarity=-0.077 Sum_probs=37.3
Q ss_pred ccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChhHH
Q 047120 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN---DVIWRTLLSACRNYENLNVG 536 (634)
Q Consensus 461 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~a 536 (634)
..++.++|...++.+... -+.+...+..+...|...|++++|++.++++ ...|+ ...+..++..+...|+.++|
T Consensus 197 ~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred hhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 334444444444444432 1122344444455555555555555555444 22222 33455555555555555555
Q ss_pred HHHHHHHh
Q 047120 537 EPVAKHLI 544 (634)
Q Consensus 537 ~~~~~~~~ 544 (634)
...+++.+
T Consensus 275 ~~~~r~al 282 (287)
T 3qou_A 275 ASXYRRQL 282 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.67 E-value=1.6e-07 Score=76.76 Aligned_cols=118 Identities=8% Similarity=-0.032 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 047120 449 DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PME-PNDVIWRTLLSA 526 (634)
Q Consensus 449 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~ 526 (634)
...+..+...+...|++++|...++.+.... +.+...+..++..+...|++++|.+.+++. ... .+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 3456666777777888888888888776631 234666777888888888888888888776 223 346788888888
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCch
Q 047120 527 CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWN 568 (634)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 568 (634)
+...|++++|...++++++..|.++..+..++.++.+.|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999998888763
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.67 E-value=1.6e-07 Score=77.10 Aligned_cols=116 Identities=9% Similarity=0.011 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 047120 449 DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSA 526 (634)
Q Consensus 449 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 526 (634)
...+..+...+...|++++|...++.+.+. .+.+...+..+...|...|++++|++.++++ .. +.+...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 345666666666677777777777666542 1224556666777777777777777777765 22 2346677788888
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCC
Q 047120 527 CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGM 566 (634)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 566 (634)
+...|++++|...++++++.+|.++..+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888899999999999988888888888888888876653
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.65 E-value=8.2e-08 Score=90.69 Aligned_cols=191 Identities=8% Similarity=-0.084 Sum_probs=126.2
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 047120 382 NGKHGVALIDMYSKCGSIENAIKVFEQIE---DGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLN 457 (634)
Q Consensus 382 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 457 (634)
+...+..+...+.+.|++++|+..|++.. ..+...|..+..+|...|++++|+..+++..+. .|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34555666777777777777777777665 336667888888888888888888888888764 454 567888888
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCcccCh-hHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 047120 458 ACAHAGLVKEGLLCFELMRRIHKLEPEL-QHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVG 536 (634)
Q Consensus 458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 536 (634)
++...|++++|...|+.+.+. .|+. ..+...+....+..+...... .......++......+.. + ..|++++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 888889999999888887763 2221 111112222222111111111 222233334443333332 2 26899999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHhcC-CCchHHHHHHHHHHhC
Q 047120 537 EPVAKHLIGMDSSNSSSYVLLSNMFAGL-GMWNDARRVRSMMKER 580 (634)
Q Consensus 537 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 580 (634)
.+.++++++.+|.+......+...+.+. +++++|.++|.++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998887777887777766 7788999999888653
No 131
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.64 E-value=1.2e-07 Score=77.17 Aligned_cols=96 Identities=8% Similarity=0.015 Sum_probs=68.9
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhc
Q 047120 486 QHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563 (634)
Q Consensus 486 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 563 (634)
..+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++.+|.++..|..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34556666677777777777777765 2233 466777777777777778888888888777777777777777878777
Q ss_pred CCCchHHHHHHHHHHhCC
Q 047120 564 LGMWNDARRVRSMMKERN 581 (634)
Q Consensus 564 ~g~~~~A~~~~~~~~~~~ 581 (634)
.|++++|.+.+++..+..
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 888888877777775543
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.64 E-value=1.8e-07 Score=90.89 Aligned_cols=94 Identities=9% Similarity=-0.014 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120 485 LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA 562 (634)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (634)
...|..+..+|.+.|++++|++.++++ .+.| +...|..+..++...|++++|+..|+++++++|.++..+..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467888999999999999999999887 3344 57789999999999999999999999999999999999999999999
Q ss_pred cCCCchHH-HHHHHHHH
Q 047120 563 GLGMWNDA-RRVRSMMK 578 (634)
Q Consensus 563 ~~g~~~~A-~~~~~~~~ 578 (634)
+.|++++| ...+++|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 45666663
No 133
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.63 E-value=1.4e-06 Score=88.92 Aligned_cols=349 Identities=10% Similarity=-0.034 Sum_probs=195.7
Q ss_pred CC-ChHHHHHHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC--CCchHHHHHHHHHHhcCC-hHHHHHHH
Q 047120 198 SG-NIESARELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE--RDLISWNSMLHGCVKCGK-MDDAQALF 273 (634)
Q Consensus 198 ~g-~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~-~~~A~~~~ 273 (634)
.| +++.|..+|+.+...-|. ++ .+.+..+|++... |++..|...+.-..+.+. .+....+|
T Consensus 7 ~~~~i~~aR~vyer~l~~~P~--------------~~-~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLYMS--------------KD-YRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp -----CCHHHHHHHHHHHHHT--------------TC-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred cCcchHHHHHHHHHHHHHCCC--------------CC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 45 366777777776554333 66 9999999999887 888888888887776663 34455555
Q ss_pred hhCC------CCChhHHHHHHHHHH----HcCChHHHHHHhhhCCCCCh----hhHHHHHHHHHHcCC------------
Q 047120 274 DKMP------KRDVVSWANMIDGYA----KLGRVDIARRLFDEMPKRDV----VACNAMMGGYVRNGY------------ 327 (634)
Q Consensus 274 ~~~~------~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~g~------------ 327 (634)
+... ..+...|...+..+. ..++.+.+.++|++...-.. ..|...... .....
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~ 150 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL 150 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh
Confidence 5543 235577777776554 34667888888888765211 123222221 11111
Q ss_pred --chHHHHHHHHHHhcCCCC-CCHhHHHHHHHHHHcc--CC-----hHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC
Q 047120 328 --SMKALEIFDNMQCELYLH-PDDASLVIVLSAIAQL--GH-----IDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG 397 (634)
Q Consensus 328 --~~~A~~~~~~m~~~~~~~-p~~~~~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 397 (634)
+..|..+++.+... .. .+...|...+.--... +- .+.+..+|++++... +.++.+|...+..+.+.|
T Consensus 151 ~~y~~ar~~y~~~~~~--~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~ 227 (493)
T 2uy1_A 151 PIFQSSFQRYQQIQPL--IRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIG 227 (493)
T ss_dssp HHHHHHHHHHHHHHHH--HHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH--HhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 22233333333321 00 1222343333322211 11 234566777777643 555777777788888888
Q ss_pred CHHHHHHHHHhccCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCCC---HHHHHHHHHHHhccC
Q 047120 398 SIENAIKVFEQIEDG--SVDHWNAMINGLAIHGLGELAFDLLMEMERLS---------IEPD---DITFTGLLNACAHAG 463 (634)
Q Consensus 398 ~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g---------~~p~---~~~~~~ll~~~~~~g 463 (634)
+++.|..+|++.... +...|. .|....+.++. ++.+.+.- ..+. ...|...+....+.+
T Consensus 228 ~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~ 300 (493)
T 2uy1_A 228 QKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKR 300 (493)
T ss_dssp CHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcC
Confidence 888888888765532 222222 22222222222 22222110 0111 234566666666677
Q ss_pred CHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 047120 464 LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG-HIEAARNLIEDM--PMEPNDVIWRTLLSACRNYENLNVGEPVA 540 (634)
Q Consensus 464 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 540 (634)
..+.|..+|+.+ +..+ .+...|...+..-.+.| +.+.|.++|+.. ..+.++..|...+....+.|+.+.|..++
T Consensus 301 ~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~ 377 (493)
T 2uy1_A 301 GLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALF 377 (493)
T ss_dssp CHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 788888888888 3111 23344443333333333 688888888876 22223445566666667788888888888
Q ss_pred HHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 541 KHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 541 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
+++. .....|..++..-...|+.+.+.++++++.+
T Consensus 378 er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 378 KRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8872 3455677777777777888888888877754
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.62 E-value=6.7e-08 Score=84.21 Aligned_cols=119 Identities=8% Similarity=0.062 Sum_probs=65.2
Q ss_pred ccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCh--hH
Q 047120 461 HAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSA-CRNYENL--NV 535 (634)
Q Consensus 461 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~~--~~ 535 (634)
..|++++|...++.+.+.. +.+...|..+...|...|++++|...++++ ...| +...+..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455555555555554421 223445555566666666666666666554 2222 34455555555 5556665 66
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120 536 GEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 536 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
|...++++++.+|.++..+..++.+|...|++++|...++++.+..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 6666666666666666666666666666666666666666665543
No 135
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.61 E-value=2.3e-07 Score=73.40 Aligned_cols=99 Identities=14% Similarity=0.100 Sum_probs=82.2
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CCchHHHHHH
Q 047120 484 ELQHYGCMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSS--NSSSYVLLSN 559 (634)
Q Consensus 484 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 559 (634)
+...+..+...+.+.|++++|...++++ .. +.+...+..+...+...|++++|...++++++..|. ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3556677788888888888888888876 22 345677888888889999999999999999999998 8889999999
Q ss_pred HHhcC-CCchHHHHHHHHHHhCCC
Q 047120 560 MFAGL-GMWNDARRVRSMMKERNL 582 (634)
Q Consensus 560 ~~~~~-g~~~~A~~~~~~~~~~~~ 582 (634)
++... |++++|.+.+++..+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999998876544
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.60 E-value=9e-07 Score=81.40 Aligned_cols=138 Identities=9% Similarity=-0.094 Sum_probs=100.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC--hhHHHHHHHH
Q 047120 417 WNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE--LQHYGCMVDI 494 (634)
Q Consensus 417 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~ 494 (634)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+.... .. .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHH
Confidence 344566777888888888888877764 45544555555678888999999998886544 11 111 2357778888
Q ss_pred HhccCCHHHHHHHHHhC--C-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHH
Q 047120 495 LGRAGHIEAARNLIEDM--P-MEPN--DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559 (634)
Q Consensus 495 ~~~~g~~~~A~~~~~~~--~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 559 (634)
+.+.|++++|++.|++. + ..|. .........++.+.|+.++|...|+++.+.+|. +..+..|.+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 99999999999999887 2 2143 346667777889999999999999999999987 666655543
No 137
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.59 E-value=7.5e-06 Score=77.76 Aligned_cols=159 Identities=12% Similarity=-0.062 Sum_probs=120.5
Q ss_pred HHHHhHhcCCHHHHHHHHHhccCC---Chh------HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 047120 389 LIDMYSKCGSIENAIKVFEQIEDG---SVD------HWNAMINGLAIHGLGELAFDLLMEMERLSIE-PD----DITFTG 454 (634)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~---~~~------~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ 454 (634)
.+..+...|++++|...+++..+. +.. .+..+...+...+++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466788889999999999886532 111 3344666777778999999999999874322 22 236889
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhc----CcccC-hhHHHHHHHHHhccCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 047120 455 LLNACAHAGLVKEGLLCFELMRRIH----KLEPE-LQHYGCMVDILGRAGHIEAARNLIEDM-------PMEPN-DVIWR 521 (634)
Q Consensus 455 ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 521 (634)
+...|...|++++|..+++++.+.. +..+. ..++..++..|.+.|++++|++.+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999987421 11222 346888999999999999999998876 12222 56888
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHhccC
Q 047120 522 TLLSACRNYEN-LNVGEPVAKHLIGMD 547 (634)
Q Consensus 522 ~l~~~~~~~g~-~~~a~~~~~~~~~~~ 547 (634)
.+..++...|+ +++|...+++++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 89999999995 699999999998653
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.56 E-value=2.4e-07 Score=77.72 Aligned_cols=105 Identities=10% Similarity=-0.016 Sum_probs=86.3
Q ss_pred CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHH
Q 047120 445 IEPDD-ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWR 521 (634)
Q Consensus 445 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~ 521 (634)
+.|+. ..+..+...+.+.|++++|+..|+.+.... +.+...|..+..+|.+.|++++|++.|+++ .+.|+ +..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 45553 477788888899999999999999988741 335777888999999999999999999987 44444 67888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 047120 522 TLLSACRNYENLNVGEPVAKHLIGMDSSNS 551 (634)
Q Consensus 522 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (634)
.+..++...|++++|+..|++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 899999999999999999999999998754
No 139
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.55 E-value=1.6e-07 Score=75.72 Aligned_cols=95 Identities=14% Similarity=0.006 Sum_probs=82.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcC
Q 047120 487 HYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL 564 (634)
Q Consensus 487 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 564 (634)
.+..+...+.+.|++++|+..++++ ...| +...|..+..++...|++++|+..++++++++|.++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4566778888999999999999987 4445 5778888999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 047120 565 GMWNDARRVRSMMKERN 581 (634)
Q Consensus 565 g~~~~A~~~~~~~~~~~ 581 (634)
|++++|+..++++.+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987653
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.55 E-value=1.1e-06 Score=78.15 Aligned_cols=152 Identities=11% Similarity=-0.008 Sum_probs=82.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---Cccc-ChhHHHHHHHHHhccCCHH
Q 047120 427 HGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIH---KLEP-ELQHYGCMVDILGRAGHIE 502 (634)
Q Consensus 427 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~ 502 (634)
.|++++|.+.++.+... .......+..+...+...|++++|...++++.... +..+ ....+..+...|...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 45555555533333221 11123355555555556666666666555554311 1111 2334556666666666666
Q ss_pred HHHHHHHhC-CC---CC-C----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC--CCC----chHHHHHHHHhcCCCc
Q 047120 503 AARNLIEDM-PM---EP-N----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDS--SNS----SSYVLLSNMFAGLGMW 567 (634)
Q Consensus 503 ~A~~~~~~~-~~---~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~g~~ 567 (634)
+|.+.+++. .. .+ + ...+..+...+...|++++|...++++++..+ .++ ..+..++.++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666554 10 11 2 23456666667777777777777777765532 111 1346777777777888
Q ss_pred hHHHHHHHHHHh
Q 047120 568 NDARRVRSMMKE 579 (634)
Q Consensus 568 ~~A~~~~~~~~~ 579 (634)
++|.+.+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887777776654
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.54 E-value=2.8e-07 Score=79.04 Aligned_cols=110 Identities=12% Similarity=0.023 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 047120 449 DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSA 526 (634)
Q Consensus 449 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~ 526 (634)
...+..+...+...|++++|+..|+.+.+.. +.+...|..+..+|.+.|++++|+..++++ .+.|+ ...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4578888889999999999999999988742 335777888999999999999999999887 44444 7788889999
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 047120 527 CRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560 (634)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 560 (634)
+...|++++|+..++++++++|.++..+...+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 9999999999999999999999998866655543
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.54 E-value=4.5e-07 Score=74.89 Aligned_cols=97 Identities=8% Similarity=-0.007 Sum_probs=65.6
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 047120 484 ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF 561 (634)
Q Consensus 484 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (634)
+...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++.+|.++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3455666666666666666666666665 2223 3556666677777777777777777777777777777777777777
Q ss_pred hcCCCchHHHHHHHHHHhC
Q 047120 562 AGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 562 ~~~g~~~~A~~~~~~~~~~ 580 (634)
...|++++|+..++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 7777777777777776544
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.53 E-value=1.6e-06 Score=82.38 Aligned_cols=161 Identities=11% Similarity=-0.053 Sum_probs=115.2
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhccC---CCh------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHH
Q 047120 386 GVALIDMYSKCGSIENAIKVFEQIED---GSV------DHWNAMINGLAIHGLGELAFDLLMEMERLSI---EPD--DIT 451 (634)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~~ 451 (634)
+...+..+...|++++|.+.+.+..+ ... ..+..+...+...|++++|+..+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 33455667777888888777765431 111 2244456667778899999999988875321 122 347
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-----hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-------HH
Q 047120 452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-----LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-------DV 518 (634)
Q Consensus 452 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------~~ 518 (634)
++.+...|...|++++|..+++++.+.....|+ ..++..++..|.+.|++++|++.+++. .+.++ ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 888888999999999999999988742111222 257888999999999999999998876 11111 56
Q ss_pred HHHHHHHHHHhcCChhHH-HHHHHHHhcc
Q 047120 519 IWRTLLSACRNYENLNVG-EPVAKHLIGM 546 (634)
Q Consensus 519 ~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 546 (634)
+|..+...+...|++++| ...+++++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 788889999999999999 8888888754
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.51 E-value=1.8e-07 Score=78.56 Aligned_cols=116 Identities=9% Similarity=-0.010 Sum_probs=89.4
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCC
Q 047120 437 LMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PME 514 (634)
Q Consensus 437 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 514 (634)
++++.. +.|+ ...+..+...+...|++++|...|+.+.... +.+...|..+..+|.+.|++++|++.|+++ ...
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 444443 3454 3466777778888899999999998887631 335677888888999999999999999887 333
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHH
Q 047120 515 P-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVL 556 (634)
Q Consensus 515 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 556 (634)
| +...+..+..++...|++++|+..+++++++.|.+|.....
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 4 46788888889999999999999999999999988776443
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.50 E-value=1.2e-06 Score=69.80 Aligned_cols=110 Identities=12% Similarity=0.085 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047120 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSAC 527 (634)
Q Consensus 450 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 527 (634)
..+..+...+...|++++|...++.+.... +.+...+..++..+.+.|++++|...++++ ...| +...+..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345555556666666666666666665521 224455666666666677777777666665 2223 355666777777
Q ss_pred HhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 047120 528 RNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF 561 (634)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (634)
...|++++|...++++++.+|.++..+..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 7777777777777777777777777666666553
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.50 E-value=6.4e-07 Score=73.36 Aligned_cols=99 Identities=7% Similarity=0.036 Sum_probs=89.4
Q ss_pred cChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 047120 483 PELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560 (634)
Q Consensus 483 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 560 (634)
.+...+..++..+.+.|++++|.+.++++ ...| +...+..+...+...|++++|...++++++.+|.++..+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34667888999999999999999999987 4445 577889999999999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHhCC
Q 047120 561 FAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 561 ~~~~g~~~~A~~~~~~~~~~~ 581 (634)
|.+.|++++|.+.+++..+..
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999987653
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.50 E-value=3.7e-07 Score=74.31 Aligned_cols=96 Identities=6% Similarity=-0.022 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc-------hHH
Q 047120 485 LQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS-------SYV 555 (634)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~ 555 (634)
...+..++..+.+.|++++|++.|+++ .+.|+ ...|..+..+|...|++++|+..++++++++|.++. +|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345667888888889999999888887 44444 678888888999999999999999999998876654 567
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 556 LLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 556 ~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
.++.++...|++++|++.+++..+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7888888999999999999887653
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.48 E-value=8.8e-07 Score=78.89 Aligned_cols=153 Identities=11% Similarity=-0.025 Sum_probs=91.7
Q ss_pred hcCCHHHHHH---HHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHhccCCHH
Q 047120 395 KCGSIENAIK---VFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMER----LSIEPD-DITFTGLLNACAHAGLVK 466 (634)
Q Consensus 395 ~~~~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g~~~ 466 (634)
..|++++|.+ .+..........+..+...+...|++++|...+++..+ .+..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455566655 33332222344566666666677777777776666554 111222 336666777777778888
Q ss_pred HHHHHHHHhHHhcCccc-----ChhHHHHHHHHHhccCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCh
Q 047120 467 EGLLCFELMRRIHKLEP-----ELQHYGCMVDILGRAGHIEAARNLIEDM----PMEPN----DVIWRTLLSACRNYENL 533 (634)
Q Consensus 467 ~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~ 533 (634)
+|...+++......-.+ ....+..+...+...|++++|.+.+++. ...++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88777777665311111 1334667777778888888887777665 11122 22456677778888888
Q ss_pred hHHHHHHHHHhccC
Q 047120 534 NVGEPVAKHLIGMD 547 (634)
Q Consensus 534 ~~a~~~~~~~~~~~ 547 (634)
++|...++++++..
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877554
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.48 E-value=7.5e-07 Score=71.07 Aligned_cols=98 Identities=10% Similarity=0.094 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120 485 LQHYGCMVDILGRAGHIEAARNLIEDM-PME-PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA 562 (634)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (634)
...+..++..+...|++++|...+++. ... .+...+..+...+...|++++|...++++++..|.++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456778889999999999999999987 333 467788889999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHhCCC
Q 047120 563 GLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~~ 582 (634)
..|++++|.+.+++..+.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HHhhHHHHHHHHHHHHHcCC
Confidence 99999999999999976643
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.47 E-value=6.4e-07 Score=79.55 Aligned_cols=95 Identities=8% Similarity=-0.064 Sum_probs=72.9
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhc
Q 047120 486 QHYGCMVDILGRAGHIEAARNLIEDM-PME-PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAG 563 (634)
Q Consensus 486 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 563 (634)
..|..+..+|.+.|++++|+..++++ ... .+...+..+..++...|++++|+..++++++.+|.++..+..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56777888888999999999888887 333 4577888899999999999999999999999999999999999999998
Q ss_pred CCCchHHH-HHHHHHHhC
Q 047120 564 LGMWNDAR-RVRSMMKER 580 (634)
Q Consensus 564 ~g~~~~A~-~~~~~~~~~ 580 (634)
.|+.+++. ..+++|-..
T Consensus 169 ~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 88877776 555555443
No 151
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.46 E-value=7.8e-07 Score=71.77 Aligned_cols=97 Identities=13% Similarity=0.185 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120 485 LQHYGCMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA 562 (634)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (634)
...+..++..+.+.|++++|.+.++++ .. +.+..++..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999987 22 3457788899999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHhCC
Q 047120 563 GLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~ 581 (634)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999987653
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=1e-06 Score=73.68 Aligned_cols=110 Identities=8% Similarity=-0.053 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC----hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 047120 449 DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE----LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRT 522 (634)
Q Consensus 449 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 522 (634)
...+..+...+...|++++|...|+.+.+. .|+ ...+..+...|...|++++|++.+++. ...| +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 345555555555666666666666655441 233 344555555555555555555555554 2222 3445555
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 047120 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF 561 (634)
Q Consensus 523 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (634)
+..++...|++++|...++++++.+|.++..+..+..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 555555555555555555555555555555555444443
No 153
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.45 E-value=4.2e-07 Score=75.30 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcc-------CCCCCchH----HHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 518 VIWRTLLSACRNYENLNVGEPVAKHLIGM-------DSSNSSSY----VLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
..|..+..++.+.|++++|+..+++++++ +|+++..| +..+.++...|++++|+..|++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 37788888888888888888888888888 88888888 88899999999999999998888654
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.44 E-value=6.2e-07 Score=74.68 Aligned_cols=109 Identities=10% Similarity=-0.037 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047120 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSAC 527 (634)
Q Consensus 450 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 527 (634)
..+..+...+...|++++|...|+.+.... +.+...|..+..+|.+.|++++|+..++++ ...| +...+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 355666677788888888888888887631 335667788888888889999998888887 3334 456778888889
Q ss_pred HhcCChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 047120 528 RNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560 (634)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 560 (634)
...|++++|+..++++++..|.++........+
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999999999999999888765554433
No 155
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.43 E-value=1.2e-06 Score=76.21 Aligned_cols=128 Identities=12% Similarity=0.113 Sum_probs=98.3
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHH-HhccCCH--
Q 047120 425 AIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI-LGRAGHI-- 501 (634)
Q Consensus 425 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 501 (634)
...|++++|+..+++..+.. ..+...+..+...+...|++++|...++.+.+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34577888888888877642 2346788888889999999999999999887742 2356677788888 7788998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHH
Q 047120 502 EAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555 (634)
Q Consensus 502 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (634)
++|...++++ ...| +...+..+...+...|++++|...++++++..|.++....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 9999999887 3344 4678888888999999999999999999999998876443
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.43 E-value=1.2e-06 Score=71.08 Aligned_cols=111 Identities=9% Similarity=-0.090 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047120 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSAC 527 (634)
Q Consensus 450 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 527 (634)
..+..+...+.+.|++++|+..|+.+.+.. +.+...|..+..+|.+.|++++|++.++++ ...| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 355666677777888888888888777631 234667777888888888888888888776 3344 466788888888
Q ss_pred HhcCChhHHHHHHHHHhccC------CCCCchHHHHHHHHh
Q 047120 528 RNYENLNVGEPVAKHLIGMD------SSNSSSYVLLSNMFA 562 (634)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 562 (634)
...|++++|...++++++.+ |.++..+..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 88999999999999999888 777777776666543
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=2.9e-06 Score=70.91 Aligned_cols=97 Identities=14% Similarity=0.098 Sum_probs=66.3
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHH
Q 047120 484 ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558 (634)
Q Consensus 484 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 558 (634)
+...+..+...+...|++++|.+.+++. ...|+ ...|..+...+...|++++|+..++++++..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4555666666777777777777777665 44555 456666666677777777777777777777777777777777
Q ss_pred HHHhcCCCchHHHHHHHHHHhC
Q 047120 559 NMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
.+|...|++++|.+.+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 7777777777777777766554
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.41 E-value=1.8e-06 Score=73.88 Aligned_cols=92 Identities=13% Similarity=0.036 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHH
Q 047120 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEP-DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494 (634)
Q Consensus 416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 494 (634)
.|..+...+...|++++|+..|++..+. .| +...|..+..++...|++++|+..++.+.+.. +.+...|..+..+
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 4445555555555555555555555543 23 23445555555555555555555555554421 1224445555555
Q ss_pred HhccCCHHHHHHHHHhC
Q 047120 495 LGRAGHIEAARNLIEDM 511 (634)
Q Consensus 495 ~~~~g~~~~A~~~~~~~ 511 (634)
|.+.|++++|.+.|+++
T Consensus 89 ~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHH
Confidence 55555555555555544
No 159
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.40 E-value=1.1e-06 Score=71.61 Aligned_cols=99 Identities=15% Similarity=0.097 Sum_probs=88.6
Q ss_pred cChhHHHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 047120 483 PELQHYGCMVDILGRAGHIEAARNLIEDM-PM-EPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560 (634)
Q Consensus 483 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 560 (634)
.+...+..++..+...|++++|.+.++++ .. +.+...+..+...+...|++++|...++++++..|.++..+..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34567888899999999999999999987 33 34677888999999999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHhCC
Q 047120 561 FAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 561 ~~~~g~~~~A~~~~~~~~~~~ 581 (634)
+...|++++|.+.+++..+..
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999987654
No 160
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.35 E-value=0.00024 Score=67.63 Aligned_cols=174 Identities=9% Similarity=0.038 Sum_probs=103.4
Q ss_pred HHHHHcCCchHHHHHHHHHHhcCCCCCCH-hHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc-
Q 047120 320 GGYVRNGYSMKALEIFDNMQCELYLHPDD-ASLVIVLSAIAQLG-HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKC- 396 (634)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 396 (634)
....+.+..++|++++..+.. +.|+. ..|+.--..+...| .+++++.+++.++... +-+..+++.-..++...
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~---~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVR---MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhc
Confidence 333445556788888888884 35654 44555555566666 4788888888777654 33556666655555555
Q ss_pred C-CHHHHHHHHHhccCC---ChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 047120 397 G-SIENAIKVFEQIEDG---SVDHWNAMINGLAIHGLGE--------LAFDLLMEMERLSIEPDDITFTGLLNACAHAGL 464 (634)
Q Consensus 397 ~-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 464 (634)
+ ++++++++++++.+. +..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 138 ~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp CSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTT
T ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccc
Confidence 5 677777777777644 3445554444444444444 7777777777642 2245566666666666554
Q ss_pred -------HHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC
Q 047120 465 -------VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500 (634)
Q Consensus 465 -------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 500 (634)
++++++.++.+... .+-|...|+.+-..+.+.|+
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 56666666666552 12334456555555555444
No 161
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.35 E-value=9.4e-07 Score=72.04 Aligned_cols=88 Identities=15% Similarity=0.107 Sum_probs=41.7
Q ss_pred HHHHhccCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---CchHHHHHHHHhc
Q 047120 492 VDILGRAGHIEAARNLIEDM-PMEPN-D---VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN---SSSYVLLSNMFAG 563 (634)
Q Consensus 492 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~ 563 (634)
...+.+.|++++|.+.++++ ...|+ . ..+..+..++...|++++|...++++++..|.+ +..+..++.+|..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 33444444455544444443 11122 1 244444444555555555555555555555554 3445555555555
Q ss_pred CCCchHHHHHHHHHHh
Q 047120 564 LGMWNDARRVRSMMKE 579 (634)
Q Consensus 564 ~g~~~~A~~~~~~~~~ 579 (634)
.|++++|...++++.+
T Consensus 89 ~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 89 EGKNTEAQQTLQQVAT 104 (129)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555443
No 162
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.35 E-value=7.7e-06 Score=69.83 Aligned_cols=127 Identities=11% Similarity=-0.040 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHH
Q 047120 416 HWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDIL 495 (634)
Q Consensus 416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 495 (634)
.|..+...+...|++++|...|++..+.. ..+...+..+..++...|++++|...++.+.+.. +.+...+..++.++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 34445555555666666666666655431 1234455556666666666666666666665521 22344556666666
Q ss_pred hccCCHHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHhcCChhHHHHHHHHHhc
Q 047120 496 GRAGHIEAARNLIEDM-PMEP-NDVIWR--TLLSACRNYENLNVGEPVAKHLIG 545 (634)
Q Consensus 496 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~ 545 (634)
.+.|++++|.+.++++ ...| +...+. ..+..+...|++++|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 6666666666666655 2222 233332 223335556666676666666543
No 163
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.34 E-value=7e-05 Score=71.33 Aligned_cols=216 Identities=11% Similarity=0.066 Sum_probs=155.4
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC-CHHHHHHHHHhccC---CChhHHHHHHHHHHHc-C-ChHH
Q 047120 359 AQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCG-SIENAIKVFEQIED---GSVDHWNAMINGLAIH-G-LGEL 432 (634)
Q Consensus 359 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-~-~~~~ 432 (634)
...+..++|+.+++.++... +-+..+++.--.++...| .+++++++++.+.. ++..+|+.-...+... + ++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 34455678899999888865 345566777777777788 59999999998873 4666787777777776 7 8999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHH--------HHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC---
Q 047120 433 AFDLLMEMERLSIEP-DDITFTGLLNACAHAGLVK--------EGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH--- 500 (634)
Q Consensus 433 A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 500 (634)
++++++++.+. .| +...|+.-...+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 144 EIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcccccc
Confidence 99999999975 44 4557776666665555555 8999999888732 3456778888888888876
Q ss_pred ----HHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCh--------------------hHHHHHHHHHhccC------C
Q 047120 501 ----IEAARNLIEDM-P-MEPNDVIWRTLLSACRNYENL--------------------NVGEPVAKHLIGMD------S 548 (634)
Q Consensus 501 ----~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------p 548 (634)
++++++.++++ . .+-|...|+.+-..+.+.|.. .........+.... +
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 78899998877 3 344577888877777766654 23333333333322 3
Q ss_pred CCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 549 SNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 549 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
.++.++..|+++|...|+.++|.++++.+.+
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 5666888999999999999999999999863
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.32 E-value=3.9e-06 Score=85.15 Aligned_cols=94 Identities=10% Similarity=0.019 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120 485 LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA 562 (634)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (634)
...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++++|+..|+++++++|.++.++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467888899999999999999999887 3334 57789999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHH-HHHHHH
Q 047120 563 GLGMWNDARR-VRSMMK 578 (634)
Q Consensus 563 ~~g~~~~A~~-~~~~~~ 578 (634)
+.|+++++.+ .+++|-
T Consensus 397 ~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999988764 455553
No 165
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.31 E-value=3.6e-07 Score=73.18 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578 (634)
Q Consensus 519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 578 (634)
.+..+...+...|++++|+..++++++.+|.++..+..++.+|...|++++|++.+++..
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444445555555555555555555555555555555555555555555555555443
No 166
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.29 E-value=0.00012 Score=69.29 Aligned_cols=232 Identities=9% Similarity=-0.005 Sum_probs=130.9
Q ss_pred HHcCCch-HHHHHHHHHHhcCCCCCCHhH-HHHHHHHHHccCC----------hHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047120 323 VRNGYSM-KALEIFDNMQCELYLHPDDAS-LVIVLSAIAQLGH----------IDKGVAIHRYLEKDQFSLNGKHGVALI 390 (634)
Q Consensus 323 ~~~g~~~-~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~ 390 (634)
.+.|.++ +|++++..+. .+.|+..| |+.--..+...+. ++++..+++.+.... +-+..+|+.-.
T Consensus 40 ~~~~e~s~eaL~~t~~~L---~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~ 115 (331)
T 3dss_A 40 RQAGELDESVLELTSQIL---GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC 115 (331)
T ss_dssp HHTTCCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHH---HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3455554 7788888887 45665533 3332222222221 456666777666643 34556666666
Q ss_pred HHhHhcC--CHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--
Q 047120 391 DMYSKCG--SIENAIKVFEQIE---DGSVDHWNAMINGLAIHGL-GELAFDLLMEMERLSIEPDDITFTGLLNACAHA-- 462 (634)
Q Consensus 391 ~~~~~~~--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-- 462 (634)
.++.+.+ .+++++.+++++. ..+..+|+.-.-.+...|. ++++++.++++.+.. .-|...|+.....+...
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence 6666666 3777777777766 3355566666666666676 477888887777652 22344555544444333
Q ss_pred ------------CCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhcc-----------CCHHHHHHHHHhC-CCCCCH-
Q 047120 463 ------------GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA-----------GHIEAARNLIEDM-PMEPND- 517 (634)
Q Consensus 463 ------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~~p~~- 517 (634)
+.++++++.+..+... .+-|...|+.+-..+.+. +.++++++.++++ ...||.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~ 272 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENK 272 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccc
Confidence 3466777777776652 123445555554444444 3456666666666 344543
Q ss_pred HHHHHHHH---HHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 047120 518 VIWRTLLS---ACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF 561 (634)
Q Consensus 518 ~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (634)
..+.+++. +....|..++....++++++++|....-|..+..-+
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 22222221 112355666777777777777776666666655443
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=8.7e-06 Score=82.25 Aligned_cols=162 Identities=7% Similarity=-0.085 Sum_probs=99.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhc---Cccc-ChhH
Q 047120 417 WNAMINGLAIHGLGELAFDLLMEMERLS-IEPDD----ITFTGLLNACAHAGLVKEGLLCFELMRRIH---KLEP-ELQH 487 (634)
Q Consensus 417 ~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~ 487 (634)
+..++..|...|++++|.+.+..+...- ..++. ...+.+...+...|+++.|..+++...... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666677777777776666654321 01111 123333344555677777777777655411 1111 1345
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC---CC----Cc
Q 047120 488 YGCMVDILGRAGHIEAARNLIEDM-----P--MEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDS---SN----SS 552 (634)
Q Consensus 488 ~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p---~~----~~ 552 (634)
+..++..|...|++++|..+++++ + .++. ..++..++..|...|++++|..++++++...+ .+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667778888888888888877765 1 1222 33667777778888888888888888776542 21 12
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120 553 SYVLLSNMFAGLGMWNDARRVRSMMK 578 (634)
Q Consensus 553 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 578 (634)
.+..++.++...|++++|...+.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45566777778888888887776664
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.28 E-value=3.1e-06 Score=69.77 Aligned_cols=100 Identities=8% Similarity=-0.094 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 047120 448 DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLS 525 (634)
Q Consensus 448 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 525 (634)
+...+..+...+...|++++|...|+.+.... +.+...|..+..+|...|++++|...++++ ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 45677777778888888888888888777631 234667778888888888888888888876 3334 4668888888
Q ss_pred HHHhcCChhHHHHHHHHHhccCCC
Q 047120 526 ACRNYENLNVGEPVAKHLIGMDSS 549 (634)
Q Consensus 526 ~~~~~g~~~~a~~~~~~~~~~~p~ 549 (634)
++...|++++|+..++++++..|.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888899999999999999888876
No 169
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.28 E-value=1.7e-06 Score=73.89 Aligned_cols=110 Identities=9% Similarity=0.048 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCc-----ccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 047120 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKL-----EPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLL 524 (634)
Q Consensus 450 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 524 (634)
..+......+.+.|++++|+..|..+...... .|+...+ ..+ .+.+...|..+.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~-~~~~~~~~~nla 70 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VEL-DRKNIPLYANMS 70 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHH-HHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHH-HHHHHHHHHHHH
Confidence 35666667777777777777777776652000 0000000 000 001123444445
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
.++.+.|++++|+..++++++++|.++..|..++.+|...|++++|...+++..+.
T Consensus 71 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 71 QCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555555555555555555555555433
No 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.28 E-value=1.8e-06 Score=73.37 Aligned_cols=129 Identities=14% Similarity=0.096 Sum_probs=77.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC----hhHHHHHHHHHhccCCHHHHHHHHHhC----CCCCC----HH
Q 047120 451 TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE----LQHYGCMVDILGRAGHIEAARNLIEDM----PMEPN----DV 518 (634)
Q Consensus 451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~ 518 (634)
++..+...+...|++++|...++++.....-.++ ...+..+...+...|++++|.+.+++. +..++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444555555555555555554432110111 124555666666666666666666654 10111 33
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCC------CCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 519 IWRTLLSACRNYENLNVGEPVAKHLIGMDSS------NSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
.+..+...+...|++++|...++++++..+. .+..+..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666667777788888888888887765321 134677788888888888888888887754
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.26 E-value=1.9e-06 Score=70.19 Aligned_cols=108 Identities=7% Similarity=0.019 Sum_probs=58.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CC----CCC----HHHHHH
Q 047120 452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PM----EPN----DVIWRT 522 (634)
Q Consensus 452 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ 522 (634)
+..+...+...|++++|...++.+.... +.+...+..++..|...|++++|...++++ .. .++ ..++..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3444444445555555555555544421 223344445555555555555555555544 11 112 445666
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA 562 (634)
Q Consensus 523 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (634)
+...+...|++++|...++++++..| ++.....+..+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 66677777777777777777777766 4555555555543
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.26 E-value=2.1e-06 Score=69.95 Aligned_cols=97 Identities=9% Similarity=0.030 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------CchHH
Q 047120 485 LQHYGCMVDILGRAGHIEAARNLIEDM-P-MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN-------SSSYV 555 (634)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 555 (634)
...+..++..+...|++++|...++++ . .+.+...+..+...+...|++++|...++++++..|.+ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 356778889999999999999999987 3 23467788889999999999999999999999998766 77899
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120 556 LLSNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 556 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
.++.+|...|++++|.+.++++.+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999997753
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.24 E-value=2.6e-06 Score=82.68 Aligned_cols=147 Identities=10% Similarity=-0.043 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHH
Q 047120 415 DHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDI 494 (634)
Q Consensus 415 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 494 (634)
..+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ ....|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l-----------~~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV-----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH-----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH-----------HHHHHHHHHHH
Confidence 35666667777777788888877777653 444331 22333333333221 11367788889
Q ss_pred HhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh-cCCCchHHH
Q 047120 495 LGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA-GLGMWNDAR 571 (634)
Q Consensus 495 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~ 571 (634)
|.+.|++++|+..++++ ...| +...|..+..+|...|++++|+..|+++++++|.++..+..+..+.. ..+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 3344 57788889999999999999999999999999999999988888844 556777888
Q ss_pred HHHHHHHhCC
Q 047120 572 RVRSMMKERN 581 (634)
Q Consensus 572 ~~~~~~~~~~ 581 (634)
.++++|.+..
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8888886543
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.24 E-value=9.1e-06 Score=66.02 Aligned_cols=104 Identities=8% Similarity=0.006 Sum_probs=70.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCcccC-h---hHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 047120 454 GLLNACAHAGLVKEGLLCFELMRRIHKLEPE-L---QHYGCMVDILGRAGHIEAARNLIEDM-PMEPN----DVIWRTLL 524 (634)
Q Consensus 454 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 524 (634)
.+...+...|++++|...++.+.+. .|+ . ..+..+..++.+.|++++|...++++ ...|+ ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 3445566677777777777776653 222 2 35666777777778888877777766 22333 45677777
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 047120 525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560 (634)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 560 (634)
.++...|++++|...++++++..|.++........+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 788888888889888888888888776655544443
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.24 E-value=7.2e-06 Score=64.47 Aligned_cols=100 Identities=14% Similarity=-0.010 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 047120 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP---NDVIWRTLLS 525 (634)
Q Consensus 450 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~ 525 (634)
..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++ ...| +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 355666677777788888888887776631 234566777888888888888888888776 3334 4677888888
Q ss_pred HHHhc-CChhHHHHHHHHHhccCCCCC
Q 047120 526 ACRNY-ENLNVGEPVAKHLIGMDSSNS 551 (634)
Q Consensus 526 ~~~~~-g~~~~a~~~~~~~~~~~p~~~ 551 (634)
.+... |++++|.+.++++++..|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888 999999999999988888764
No 176
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.24 E-value=5e-06 Score=78.34 Aligned_cols=113 Identities=7% Similarity=-0.127 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 047120 448 DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLS 525 (634)
Q Consensus 448 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~ 525 (634)
+...+..+...+...|++++|...|+.+.+.. +.+...|..+..+|.+.|++++|++.++++ ...|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45678888889999999999999999988741 235777888999999999999999999887 55554 678888888
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120 526 ACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA 562 (634)
Q Consensus 526 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (634)
++...|++++|+..++++++++|.++..+...+....
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 9999999999999999999999877666554444443
No 177
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.24 E-value=2.9e-06 Score=68.92 Aligned_cols=95 Identities=7% Similarity=0.034 Sum_probs=47.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCC----CC----HHHHHH
Q 047120 452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PME----PN----DVIWRT 522 (634)
Q Consensus 452 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~----p~----~~~~~~ 522 (634)
+..+...+.+.|++++|+..|+++.+.. +.+...|..+..+|.+.|++++|++.+++. .+. ++ ..+|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3344444444455555555554444321 112334444455555555555555544443 111 11 124555
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCC
Q 047120 523 LLSACRNYENLNVGEPVAKHLIGMDS 548 (634)
Q Consensus 523 l~~~~~~~g~~~~a~~~~~~~~~~~p 548 (634)
+..++...|++++|++.|+++++..|
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 66666777777777777777776655
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.23 E-value=1.8e-06 Score=88.07 Aligned_cols=116 Identities=5% Similarity=-0.052 Sum_probs=68.5
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 047120 458 ACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNV 535 (634)
Q Consensus 458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 535 (634)
.+.+.|++++|.+.++++.+.. +.+...|..+..+|.+.|++++|++.++++ ...| +...|..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3445566666666666665521 223555666666666666666666666665 3333 35566666666666677777
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHH--HhcCCCchHHHHHHH
Q 047120 536 GEPVAKHLIGMDSSNSSSYVLLSNM--FAGLGMWNDARRVRS 575 (634)
Q Consensus 536 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 575 (634)
|++.++++++.+|.++..+..++.+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777776666666666666666 666666666666665
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.23 E-value=5.4e-06 Score=81.33 Aligned_cols=90 Identities=7% Similarity=-0.006 Sum_probs=79.3
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 047120 484 ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMF 561 (634)
Q Consensus 484 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (634)
+...|..+..+|.+.|++++|++.++++ ...|+ ...|..+..+|...|++++|+..++++++++|.++..+..++.++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3567888999999999999999999987 55554 778889999999999999999999999999999999999999999
Q ss_pred hcCCCchHHHHH
Q 047120 562 AGLGMWNDARRV 573 (634)
Q Consensus 562 ~~~g~~~~A~~~ 573 (634)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 988888776543
No 180
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.22 E-value=8e-07 Score=78.95 Aligned_cols=97 Identities=10% Similarity=-0.020 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047120 485 LQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-N----------------DVIWRTLLSACRNYENLNVGEPVAKHLIGM 546 (634)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 546 (634)
...+..+...+.+.|++++|++.|+++ ...| + ...|..+..++...|++++|+..++++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344566677777777777777777765 2112 1 267888888999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120 547 DSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 547 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
+|.++..+..++.+|...|++++|.+.+++..+..
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999987653
No 181
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.21 E-value=4e-06 Score=69.40 Aligned_cols=109 Identities=12% Similarity=0.038 Sum_probs=76.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCccc----------ChhHHHHHHHHHhccCCHHHHHHHHHhC-CC-------
Q 047120 452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEP----------ELQHYGCMVDILGRAGHIEAARNLIEDM-PM------- 513 (634)
Q Consensus 452 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------- 513 (634)
+......+.+.|++++|+..|+++.+...-.| +...|..+..++.+.|++++|+..+++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 33444455556666666666666555211100 1226777788888888888888777766 44
Q ss_pred CCC-HHHH----HHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 047120 514 EPN-DVIW----RTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM 560 (634)
Q Consensus 514 ~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 560 (634)
.|+ ...| .....++...|++++|+..|++++++.|.+...+..+..+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 777 4578 8899999999999999999999999999988776665544
No 182
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.18 E-value=6.2e-06 Score=66.22 Aligned_cols=98 Identities=10% Similarity=0.006 Sum_probs=66.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047120 452 FTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRN 529 (634)
Q Consensus 452 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 529 (634)
+..+...+.+.|++++|+..++.+.+.. +.+...|..+..++.+.|++++|+..++++ ...| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3445556677777888887777776631 234666777777788888888888888776 3344 45677778888888
Q ss_pred cCChhHHHHHHHHHhccCCCCC
Q 047120 530 YENLNVGEPVAKHLIGMDSSNS 551 (634)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~p~~~ 551 (634)
.|++++|+..++++++.+|.++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8888888888888888887654
No 183
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.16 E-value=1.6e-05 Score=76.97 Aligned_cols=128 Identities=7% Similarity=-0.074 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047120 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD----------------DITFTGLLNACAHAGLVKEGLLCFELMRR 477 (634)
Q Consensus 414 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 477 (634)
...|..+...|.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|+..++.+.+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445666777777778888888888777764 333 36788888888888999999998888877
Q ss_pred hcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH-HHHHHHHhc
Q 047120 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVG-EPVAKHLIG 545 (634)
Q Consensus 478 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 545 (634)
.. +.+...|..+..+|...|++++|+..|+++ .+.| +...+..+...+...|+.++| ...+++++.
T Consensus 225 ~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 LD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 31 335677888888899999999999888887 3444 466778888888888888888 446666653
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.16 E-value=1.6e-06 Score=69.24 Aligned_cols=93 Identities=12% Similarity=0.082 Sum_probs=66.1
Q ss_pred cCCHHHHHHHHHHhHHhcC--cccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 047120 462 AGLVKEGLLCFELMRRIHK--LEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGE 537 (634)
Q Consensus 462 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 537 (634)
.|++++|+..|+++.+. + -+.+...+..+..+|.+.|++++|++.++++ ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46777777777777652 1 1223556777888888888888888888877 3334 4667778888888889999999
Q ss_pred HHHHHHhccCCCCCchHH
Q 047120 538 PVAKHLIGMDSSNSSSYV 555 (634)
Q Consensus 538 ~~~~~~~~~~p~~~~~~~ 555 (634)
..++++++..|.++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999888888776544
No 185
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=6.4e-05 Score=75.80 Aligned_cols=95 Identities=5% Similarity=-0.171 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC--CC--CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC-----h
Q 047120 416 HWNAMINGLAIHGLGELAFDLLMEMERL--SI--EPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE-----L 485 (634)
Q Consensus 416 ~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~ 485 (634)
++..+...|...|++++|..++++.... +. .|. ...+..++..|...|++++|..+++.+.....-.++ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 4455555566666666666665554432 11 111 235555666666666666666666655432111111 2
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHh
Q 047120 486 QHYGCMVDILGRAGHIEAARNLIED 510 (634)
Q Consensus 486 ~~~~~l~~~~~~~g~~~~A~~~~~~ 510 (634)
..+..++..+...|++++|...+.+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3345555556666666666555443
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.12 E-value=5.1e-06 Score=70.87 Aligned_cols=123 Identities=14% Similarity=0.049 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhH
Q 047120 414 VDHWNAMINGLAIHGLGELAFDLLMEMERLS------IEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQH 487 (634)
Q Consensus 414 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 487 (634)
...+......+.+.|++++|+..|.+....- -.|+... +..+. +.+...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~--------------------~~~~~-----~~~~~~ 65 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPE--------------------WVELD-----RKNIPL 65 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHH--------------------HHHHH-----HTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHH--------------------HHHHH-----HHHHHH
Confidence 4567888899999999999999999987630 0111110 01111 223556
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC-chHHHHHHHH
Q 047120 488 YGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS-SSYVLLSNMF 561 (634)
Q Consensus 488 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 561 (634)
|..+..+|.+.|++++|+..++++ .+.| +...|..+..++...|++++|...++++++++|.++ .....+..+.
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 778888888888888888888877 3344 467888899999999999999999999999999887 4455555444
No 187
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.12 E-value=0.00044 Score=65.51 Aligned_cols=219 Identities=10% Similarity=0.018 Sum_probs=152.5
Q ss_pred ccCCh-HHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCC----------HHHHHHHHHhcc---CCChhHHHHHHHHHH
Q 047120 360 QLGHI-DKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGS----------IENAIKVFEQIE---DGSVDHWNAMINGLA 425 (634)
Q Consensus 360 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~li~~~~ 425 (634)
+.|.+ ++|+.....++..+ +-+..+++.--.++...+. +++++.+++.+. ..+..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 44444 47888888888754 2233445443333333332 678888888776 456778888777777
Q ss_pred HcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhHHhcCcccChhHHHHHHHHHhcc----
Q 047120 426 IHGL--GELAFDLLMEMERLSIEPDDITFTGLLNACAHAGL-VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRA---- 498 (634)
Q Consensus 426 ~~~~--~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 498 (634)
..++ +++++++++++.+.. .-|...|+.-...+...|. +++++..++.+.+.. +-|...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhhcc
Confidence 8774 899999999999863 2256678777777777787 689999999998742 34555666666555544
Q ss_pred ----------CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc-----------CChhHHHHHHHHHhccCCCCCchHH
Q 047120 499 ----------GHIEAARNLIEDM--PMEPNDVIWRTLLSACRNY-----------ENLNVGEPVAKHLIGMDSSNSSSYV 555 (634)
Q Consensus 499 ----------g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (634)
+.++++++.++++ ..+-|...|+.+-..+.+. +.++++++.++++++..|++...+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 4578899998887 3344577887776666554 4578999999999999999855544
Q ss_pred HHHHH---HhcCCCchHHHHHHHHHHhCCC
Q 047120 556 LLSNM---FAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 556 ~l~~~---~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
.++.. ....|..++....+.++.+.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 44433 2246778889999999876543
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.11 E-value=9.1e-07 Score=69.82 Aligned_cols=93 Identities=12% Similarity=0.024 Sum_probs=75.0
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------CchHH
Q 047120 484 ELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN------SSSYV 555 (634)
Q Consensus 484 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 555 (634)
+...+..+...+.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++.+|.+ +..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4456777888888889999999888887 3333 57788888889999999999999999999999988 67788
Q ss_pred HHHHHHhcCCCchHHHHHHHH
Q 047120 556 LLSNMFAGLGMWNDARRVRSM 576 (634)
Q Consensus 556 ~l~~~~~~~g~~~~A~~~~~~ 576 (634)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888887776655543
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.11 E-value=9.4e-06 Score=68.80 Aligned_cols=131 Identities=13% Similarity=0.009 Sum_probs=77.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC----hhH
Q 047120 417 WNAMINGLAIHGLGELAFDLLMEMERLSIE-PD----DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE----LQH 487 (634)
Q Consensus 417 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~ 487 (634)
+..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++.+.....-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444555555555555555555554432100 11 135556666666777777777777665542111111 344
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047120 488 YGCMVDILGRAGHIEAARNLIEDM----PMEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547 (634)
Q Consensus 488 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 547 (634)
+..+...+...|++++|.+.+++. ....+ ..++..+...+...|++++|...++++++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 666777777777777777777665 10111 3456677777888888888888888887654
No 190
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.07 E-value=2.6e-05 Score=79.41 Aligned_cols=113 Identities=12% Similarity=-0.050 Sum_probs=50.4
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHH
Q 047120 425 AIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503 (634)
Q Consensus 425 ~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 503 (634)
.+.|++++|++.+++..+. .|+ ...|..+..++.+.|++++|+..++++.+. .+.+...|..+..+|.+.|++++
T Consensus 17 ~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 3444555555555554443 232 345555555555555555555555555442 11223445555555555555555
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHH--HHhcCChhHHHHHHH
Q 047120 504 ARNLIEDM-PMEPN-DVIWRTLLSA--CRNYENLNVGEPVAK 541 (634)
Q Consensus 504 A~~~~~~~-~~~p~-~~~~~~l~~~--~~~~g~~~~a~~~~~ 541 (634)
|++.++++ ...|+ ...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555554 11221 2223333322 455556666666655
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.06 E-value=2.8e-05 Score=78.65 Aligned_cols=124 Identities=13% Similarity=0.081 Sum_probs=95.4
Q ss_pred HhccCCHHHHHHHHHHhHHhcC--c---ccC-hhHHHHHHHHHhccCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 047120 459 CAHAGLVKEGLLCFELMRRIHK--L---EPE-LQHYGCMVDILGRAGHIEAARNLIEDM---------PMEPN-DVIWRT 522 (634)
Q Consensus 459 ~~~~g~~~~a~~~~~~~~~~~~--~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 522 (634)
+...|++++|+.+++++.+... + .|+ ..+++.|+.+|...|++++|+.+++++ +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4567888888888877665221 1 222 456888999999999999998888775 22344 347889
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcc-----CCCCCch---HHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 523 LLSACRNYENLNVGEPVAKHLIGM-----DSSNSSS---YVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 523 l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
|...|...|++++|+.++++++++ +|+.|.+ ...+..++..+|++++|..++.++++.-.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999864 5777664 45777888899999999999999987543
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.05 E-value=1.4e-05 Score=61.63 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 515 PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 515 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
.+...+..+...+...|++++|+..++++++.+|.++..|..++.+|...|++++|++.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 356788888999999999999999999999999999999999999999999999999999988654
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.03 E-value=0.00016 Score=74.94 Aligned_cols=167 Identities=11% Similarity=0.029 Sum_probs=130.3
Q ss_pred HHHHHHHHHhcc---CCChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC-
Q 047120 399 IENAIKVFEQIE---DGSVDHWNAMINGLAIHGL----------GELAFDLLMEMERLSIEPD-DITFTGLLNACAHAG- 463 (634)
Q Consensus 399 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g- 463 (634)
.++|++.++++. ..+..+|+.-...+...|+ ++++++.++++.+. .|. ..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccc
Confidence 356677777665 2344566666666666666 89999999999875 454 568888888888888
Q ss_pred -CHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---------
Q 047120 464 -LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG-HIEAARNLIEDM-PMEP-NDVIWRTLLSACRNY--------- 530 (634)
Q Consensus 464 -~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------- 530 (634)
++++++..++++.+.. +-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 7799999999998842 345677887778888888 899999999988 4444 467888777776552
Q ss_pred -----CChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchH
Q 047120 531 -----ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWND 569 (634)
Q Consensus 531 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 569 (634)
+.++++.+.++++++.+|.+..+|..+..++.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988655
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.97 E-value=1.7e-05 Score=76.81 Aligned_cols=153 Identities=11% Similarity=0.032 Sum_probs=82.2
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 047120 383 GKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHA 462 (634)
Q Consensus 383 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 462 (634)
...+..+...+.+.|++++|...|++....++... .+...++.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45567788889999999999999998763222211 1122233333332221 13778888899999
Q ss_pred CCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHhcCChhHHHHH
Q 047120 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPND-VIWRTLLSA-CRNYENLNVGEPV 539 (634)
Q Consensus 463 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~-~~~~g~~~~a~~~ 539 (634)
|++++|+..++.+.+.. +.+...|..+..+|...|++++|...|+++ .+.|+. ..+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988731 335678889999999999999999999998 566654 345555544 3456778888999
Q ss_pred HHHHhccCCCCCc
Q 047120 540 AKHLIGMDSSNSS 552 (634)
Q Consensus 540 ~~~~~~~~p~~~~ 552 (634)
|+++++..|.++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999998887653
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.97 E-value=1.9e-05 Score=59.34 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 047120 485 LQHYGCMVDILGRAGHIEAARNLIEDM-PME-PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFA 562 (634)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (634)
...+..+...+.+.|++++|++.+++. ... .+...+..+...+...|++++|...++++++.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 455667777788888888888888776 223 346677888888888999999999999999999988888888888876
Q ss_pred cCC
Q 047120 563 GLG 565 (634)
Q Consensus 563 ~~g 565 (634)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 554
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.90 E-value=3.4e-05 Score=61.17 Aligned_cols=77 Identities=18% Similarity=0.200 Sum_probs=55.3
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 504 ARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 504 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
|++.++++ ...| +...+..+...+...|++++|+..++++++.+|.++..|..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44455544 3333 45677777777777888888888888888888877777888888888888888888888777554
No 197
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.88 E-value=2.2e-05 Score=79.61 Aligned_cols=66 Identities=12% Similarity=0.068 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 517 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
...|..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|+..|+++.+...
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 468888999999999999999999999999999999999999999999999999999999987654
No 198
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.87 E-value=2.8e-05 Score=76.19 Aligned_cols=113 Identities=10% Similarity=0.024 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 047120 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEP-NDVIWRTLLSACR 528 (634)
Q Consensus 450 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 528 (634)
..+..+...+.+.|++++|+..|+++.+.. +... .....+++. ...| +..+|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 345556666666677777777666665411 1000 000111111 1223 3568888999999
Q ss_pred hcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120 529 NYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
+.|++++|+..++++++.+|.++.+|..++.+|...|++++|++.++++.+..
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999997654
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.85 E-value=6.9e-06 Score=67.84 Aligned_cols=85 Identities=8% Similarity=0.042 Sum_probs=62.2
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHhccCCCCCchHHHHHHHHhcCC
Q 047120 498 AGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYEN----------LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLG 565 (634)
Q Consensus 498 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 565 (634)
.+.+++|.+.+++. ...| +...|..+..++...|+ +++|+..|+++++++|.++.+|+.++.+|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 34455555555544 2222 34455555555554444 569999999999999999999999999999875
Q ss_pred -----------CchHHHHHHHHHHhCCC
Q 047120 566 -----------MWNDARRVRSMMKERNL 582 (634)
Q Consensus 566 -----------~~~~A~~~~~~~~~~~~ 582 (634)
++++|++.|+++.+.+.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 89999999999987654
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.83 E-value=0.00017 Score=59.17 Aligned_cols=111 Identities=8% Similarity=-0.056 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHH
Q 047120 464 LVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRN----YENLNVGEPV 539 (634)
Q Consensus 464 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~ 539 (634)
++++|.++|++..+ .+ .|+ .. |...|...+..++|.+.|++.-...+...+..|...|.. .+++++|..+
T Consensus 10 d~~~A~~~~~~aa~-~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACE-LN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHH-TT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 45556666665555 22 122 22 555555555666666666655222455566666666655 5677777777
Q ss_pred HHHHhccCCCCCchHHHHHHHHhc----CCCchHHHHHHHHHHhCCC
Q 047120 540 AKHLIGMDSSNSSSYVLLSNMFAG----LGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 540 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 582 (634)
++++.+. .++..+..|+.+|.. .+++++|.+++++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7777665 355667777777776 6777777777777766654
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.75 E-value=0.00011 Score=55.17 Aligned_cols=70 Identities=7% Similarity=0.001 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCc
Q 047120 514 EPNDVIWRTLLSACRNYEN---LNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583 (634)
Q Consensus 514 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (634)
++|+..+..+..++...++ .++|..+++++++.+|.++.....++..+.+.|++++|+.+|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4567778888887754444 799999999999999999999999999999999999999999999887665
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.71 E-value=8.8e-05 Score=58.04 Aligned_cols=68 Identities=10% Similarity=-0.039 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 515 PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 515 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
++...+..+...+...|++++|+..++++++.+|.++..+..++.+|.+.|++++|++.+++..+...
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 35667888899999999999999999999999999999999999999999999999999999987644
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.70 E-value=6.7e-05 Score=75.88 Aligned_cols=109 Identities=9% Similarity=-0.028 Sum_probs=84.9
Q ss_pred HHHhccCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc-----CCCCCc---hH
Q 047120 493 DILGRAGHIEAARNLIEDM---------PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGM-----DSSNSS---SY 554 (634)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~---~~ 554 (634)
..+..+|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++. +|+.|. .+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3466889999999888765 12233 348899999999999999999999999865 466665 68
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHhCCCccCCceeEEEEcCEEEEEEeCCCCCcchhHHHHHHHh
Q 047120 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDN 619 (634)
Q Consensus 555 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (634)
+.|+.+|..+|++++|..++++..+.-.. .-|..||.+.+...|+..
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~ 443 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQ 443 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHH
Confidence 89999999999999999999998664321 124668888887776654
No 204
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.69 E-value=5.6e-05 Score=75.10 Aligned_cols=105 Identities=8% Similarity=0.026 Sum_probs=76.9
Q ss_pred ccCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc-----CCCCCc---hHHHHH
Q 047120 497 RAGHIEAARNLIEDM---------PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGM-----DSSNSS---SYVLLS 558 (634)
Q Consensus 497 ~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~---~~~~l~ 558 (634)
..|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++. +|+.|. .++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346667776666554 12233 347888888899999999999999988764 455555 688899
Q ss_pred HHHhcCCCchHHHHHHHHHHhCCCccCCceeEEEEcCEEEEEEeCCCCCcchhHHHHHHHh
Q 047120 559 NMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDN 619 (634)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (634)
.+|..+|++++|..+++++.+.-.. .-|..||.+.++...|++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEIES 432 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHHHC
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHHhc
Confidence 9999999999999999998665331 124678888888776654
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.61 E-value=4.5e-05 Score=62.98 Aligned_cols=88 Identities=13% Similarity=0.116 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC----------HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 047120 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH----------IEAARNLIEDM-PMEPN-DVIWRTLLSACRNY 530 (634)
Q Consensus 463 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 530 (634)
+.+++|.+.++...+.. +.+...|..+..++...|+ +++|+..|+++ .+.|+ ..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 34445555555544421 2234444444444444443 34666666665 44444 45666666666655
Q ss_pred -----------CChhHHHHHHHHHhccCCCCCc
Q 047120 531 -----------ENLNVGEPVAKHLIGMDSSNSS 552 (634)
Q Consensus 531 -----------g~~~~a~~~~~~~~~~~p~~~~ 552 (634)
|++++|+..|+++++++|.++.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 5899999999999999998753
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.59 E-value=0.00072 Score=55.41 Aligned_cols=112 Identities=8% Similarity=-0.142 Sum_probs=91.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhc----cCCHHH
Q 047120 428 GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGR----AGHIEA 503 (634)
Q Consensus 428 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 503 (634)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+ . -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999998887 44444 77778888889999999999887 2 356677788888887 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCC
Q 047120 504 ARNLIEDMPMEPNDVIWRTLLSACRN----YENLNVGEPVAKHLIGMDS 548 (634)
Q Consensus 504 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 548 (634)
|.+.|++.-..-++..+..|...|.. .+++++|..+++++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988333577888888888888 8999999999999998864
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.54 E-value=0.0002 Score=53.49 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120 517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 517 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
...+..+...+...|++++|+..++++++..|.++..+..++.++...|++++|.+.+++..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45778888889999999999999999999999999999999999999999999999999987653
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.53 E-value=0.00094 Score=69.25 Aligned_cols=153 Identities=16% Similarity=0.076 Sum_probs=123.7
Q ss_pred HcCC-hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCC----------HHHHHHHHHHhHHhcCcccChhHHHHHHH
Q 047120 426 IHGL-GELAFDLLMEMERLSIEPDD-ITFTGLLNACAHAGL----------VKEGLLCFELMRRIHKLEPELQHYGCMVD 493 (634)
Q Consensus 426 ~~~~-~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 493 (634)
+.|+ .++|++.++++... .|+. ..|+.-..++...|+ +++++..++.+.+.. +-+...|..-..
T Consensus 40 ~~~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w 115 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCW 115 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 3444 67889999999985 6764 467766666666666 999999999998742 345677888788
Q ss_pred HHhccC--CHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhccCCCCCchHHHHHHHHhcC----
Q 047120 494 ILGRAG--HIEAARNLIEDM-PM-EPNDVIWRTLLSACRNYE-NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGL---- 564 (634)
Q Consensus 494 ~~~~~g--~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---- 564 (634)
++.+.| +++++++.++++ .. +-+..+|+.-..++.+.| .++++.+.++++++.+|.+..+|...+.++.+.
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 888999 779999999998 33 446788998888888888 899999999999999999999999999998774
Q ss_pred ----------CCchHHHHHHHHHHhCCC
Q 047120 565 ----------GMWNDARRVRSMMKERNL 582 (634)
Q Consensus 565 ----------g~~~~A~~~~~~~~~~~~ 582 (634)
+.+++++++++++.....
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCC
Confidence 557899999988876543
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.48 E-value=0.00027 Score=70.38 Aligned_cols=109 Identities=11% Similarity=0.103 Sum_probs=78.8
Q ss_pred HHHhccCCHHHHHHHHHhC------CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcc-----CCCCCc---hH
Q 047120 493 DILGRAGHIEAARNLIEDM------PMEPN----DVIWRTLLSACRNYENLNVGEPVAKHLIGM-----DSSNSS---SY 554 (634)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~------~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~---~~ 554 (634)
..+.+.|++++|++++++. ...|+ ..+++.|+.+|...|++++|+.+++++++. +|..|. .+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3455667777777777654 12232 347788888898899999999999988754 455555 68
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHhCCCccCCceeEEEEcCEEEEEEeCCCCCcchhHHHHHHHh
Q 047120 555 VLLSNMFAGLGMWNDARRVRSMMKERNLKKLPGCSWIELEGVVHEFFVRDKSRLQVRDIYYMLDN 619 (634)
Q Consensus 555 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (634)
+.|+.+|..+|++++|..+++++.+.-.. .-|..||.+.+...++++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~ 421 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEE 421 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHH
Confidence 88999999999999999999988664221 124678888887776654
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.38 E-value=0.00035 Score=55.13 Aligned_cols=80 Identities=11% Similarity=0.026 Sum_probs=50.8
Q ss_pred HHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047120 468 GLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEP-NDVIWRTLLSACRNYENLNVGEPVAKHLIG 545 (634)
Q Consensus 468 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 545 (634)
|+..++.+.+. .+.+...+..+...|.+.|++++|++.++++ ...| +...|..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555441 1233555666667777777777777777665 2233 355677777777777888888888887777
Q ss_pred cCCC
Q 047120 546 MDSS 549 (634)
Q Consensus 546 ~~p~ 549 (634)
..|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7653
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.31 E-value=0.0061 Score=57.97 Aligned_cols=138 Identities=9% Similarity=-0.052 Sum_probs=77.9
Q ss_pred CChhHHHHHHHHHH--HcC---ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc----c----CCHHHHHHHHHHhHH
Q 047120 412 GSVDHWNAMINGLA--IHG---LGELAFDLLMEMERLSIEPD-DITFTGLLNACAH----A----GLVKEGLLCFELMRR 477 (634)
Q Consensus 412 ~~~~~~~~li~~~~--~~~---~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~----~----g~~~~a~~~~~~~~~ 477 (634)
.+...|...+.+.. ..+ ...+|..+|++..+. .|+ ...|..+..++.. . .........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 35555665554432 222 246788888888774 666 3344444333321 0 011111111221111
Q ss_pred hcCcccChhHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 047120 478 IHKLEPELQHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551 (634)
Q Consensus 478 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (634)
....+.+..+|..+...+...|++++|...++++ ...|+...|..+...+.-.|+.++|.+.+++++.++|..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 1122345566666666666667788877777776 4456766666667777777888888888888877777554
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.13 E-value=0.0013 Score=49.89 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=51.1
Q ss_pred HHHHHhccCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHH
Q 047120 491 MVDILGRAGHIEAARNLIEDM-PMEP-NDV-IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYV 555 (634)
Q Consensus 491 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (634)
.+..+.+.|++++|++.++++ ...| +.. .+..+..++...|++++|+..++++++.+|.++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 456677888888888888876 3334 456 7888888888899999999999999999988887763
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.13 E-value=0.00065 Score=51.71 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=55.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCCc-hHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 523 LLSACRNYENLNVGEPVAKHLIGMDSSNSS-SYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 523 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
....+...|++++|+..++++++.+|.++. .+..++.+|...|++++|.+.+++..+...
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 455678899999999999999999999999 999999999999999999999999977654
No 214
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.12 E-value=9.1e-05 Score=71.59 Aligned_cols=230 Identities=10% Similarity=0.068 Sum_probs=137.1
Q ss_pred chhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHH
Q 047120 45 NTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASL 124 (634)
Q Consensus 45 ~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 124 (634)
.+.+|+.|-.++...+.+ .+|.+.|=+. .|...|..+|....+.|.+++-+..+...++..-.| ..=+.
T Consensus 53 ~p~VWs~LgkAqL~~~~v---~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDte 121 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMV---KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETE 121 (624)
T ss_dssp CCCCSSSHHHHTTTSSSC---TTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHH
T ss_pred CccHHHHHHHHHHccCch---HHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHH
Confidence 456788888888888777 6665544322 366668888888888888888888887766643333 33456
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----------------------
Q 047120 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGI---------------------- 182 (634)
Q Consensus 125 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------------- 182 (634)
|+-+|++.++..+..+++ -.||..-...+..-|...|.++.|.-+|..+..
T Consensus 122 Li~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaAr 194 (624)
T 3lvg_A 122 LIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR 194 (624)
T ss_dssp HHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTT
T ss_pred HHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888887766554443 235555556666667777777777777665531
Q ss_pred --CChhHHHHHHHHHHhCCChHHHH----HHHhhCccCCCChhHHHHHHHHHHhcCCcHHHHHHHHhhCCC---CCchHH
Q 047120 183 --RDSVSYNSMIDGYVKSGNIESAR----ELFDSMPIRERNLISWNSVLNGYAQLKSGLQFAWQIFEKMPE---RDLISW 253 (634)
Q Consensus 183 --~~~~~~~~li~~~~~~g~~~~A~----~~~~~m~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~~~~~~ 253 (634)
.++.+|..+-.+|...+.+.-|. .+.-..... ..++..|-..|- +++.+.+++.... .....|
T Consensus 195 KAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL-------~elv~~YE~~G~-f~ELIsLlEaglglErAHmGmF 266 (624)
T 3lvg_A 195 KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADEL-------EELINYYQDRGY-FEELITMLEAALGLERAHMGMF 266 (624)
T ss_dssp TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCC-------SGGGSSSSTTCC-CTTSTTTHHHHTTSTTCCHHHH
T ss_pred hcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHH-------HHHHHHHHhCCC-HHHHHHHHHHHhCCCchhHHHH
Confidence 25667887777887777765543 222211111 112223333444 5555555555443 344445
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCC-----------CChhHHHHHHHHHHHcCChHHHH
Q 047120 254 NSMLHGCVKCGKMDDAQALFDKMPK-----------RDVVSWANMIDGYAKLGRVDIAR 301 (634)
Q Consensus 254 ~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~ 301 (634)
+-|.-.|++ -++++..+.++..-. .....|.-++-.|.+-.++|.|.
T Consensus 267 TELaILYsK-Y~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 267 TELAILYSK-FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHS-SCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHh-cCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 554444443 345555555544321 34556777777777777777664
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.10 E-value=0.0018 Score=64.21 Aligned_cols=93 Identities=18% Similarity=0.076 Sum_probs=61.9
Q ss_pred cCCHHHHHHHHHHhHHhc--Ccc---cC-hhHHHHHHHHHhccCCHHHHHHHHHhC---------CCCCC-HHHHHHHHH
Q 047120 462 AGLVKEGLLCFELMRRIH--KLE---PE-LQHYGCMVDILGRAGHIEAARNLIEDM---------PMEPN-DVIWRTLLS 525 (634)
Q Consensus 462 ~g~~~~a~~~~~~~~~~~--~~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~ 525 (634)
.|++++|+.++++..+.. -+. |+ ..+++.|..+|...|++++|+.+++++ +..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456677776666655421 111 22 345777778888888888887777665 12344 347888888
Q ss_pred HHHhcCChhHHHHHHHHHhcc-----CCCCCchH
Q 047120 526 ACRNYENLNVGEPVAKHLIGM-----DSSNSSSY 554 (634)
Q Consensus 526 ~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~ 554 (634)
.|...|++++|+.++++++++ +|+.|.+-
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 889999999999999888764 46655443
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.06 E-value=0.0023 Score=48.84 Aligned_cols=63 Identities=14% Similarity=0.062 Sum_probs=35.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047120 413 SVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRR 477 (634)
Q Consensus 413 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 477 (634)
++..|..+...|...|++++|+..|++..+. .|+ ...|..+..++...|++++|...++++.+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555666666666666666665553 232 34555566666666666666666665554
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.03 E-value=0.012 Score=45.79 Aligned_cols=141 Identities=9% Similarity=0.059 Sum_probs=106.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHH
Q 047120 424 LAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503 (634)
Q Consensus 424 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 503 (634)
+.-.|..++..++..+.... .+..-|+.++--....-+-+-..++++.+-+.+.+ ..+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34568888888888887752 35567777777666667777777777776553222 34566666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCc
Q 047120 504 ARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583 (634)
Q Consensus 504 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (634)
....+-.++ .+...+...+......|.-+.-.+++..++...+++|+....++.+|.+.|+..+|.++++++=+.|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666654 344556667778889999999999999988888999999999999999999999999999999999985
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.01 E-value=0.0039 Score=61.98 Aligned_cols=98 Identities=11% Similarity=-0.052 Sum_probs=66.7
Q ss_pred HHhccCCHHHHHHHHHHhHHhcC--cccC----hhHHHHHHHHHhccCCHHHHHHHHHhC---------CCCCC-HHHHH
Q 047120 458 ACAHAGLVKEGLLCFELMRRIHK--LEPE----LQHYGCMVDILGRAGHIEAARNLIEDM---------PMEPN-DVIWR 521 (634)
Q Consensus 458 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 521 (634)
.+...|++++|+.+++++.+... +.|+ ..+++.|+.+|...|++++|+.+++++ +..|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 34456777777777777654211 1222 445777788888888888888777765 12344 34788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcc-----CCCCCchHH
Q 047120 522 TLLSACRNYENLNVGEPVAKHLIGM-----DSSNSSSYV 555 (634)
Q Consensus 522 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~~ 555 (634)
.|...|...|++++|+.++++++++ +|+.|.+-.
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 8888899999999999999988764 566665443
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.00 E-value=0.0021 Score=58.39 Aligned_cols=87 Identities=11% Similarity=0.140 Sum_probs=72.3
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHhccCCCC-CchHHHHHHHHhcC-CCchH
Q 047120 501 IEAARNLIEDM-PMEPN---DVIWRTLLSACRN-----YENLNVGEPVAKHLIGMDSSN-SSSYVLLSNMFAGL-GMWND 569 (634)
Q Consensus 501 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 569 (634)
...|...++++ .+.|+ ...|..+...|.. -|+.++|++.|+++++++|.. ...++.++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45666666665 56676 5578888888887 499999999999999999974 99999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 047120 570 ARRVRSMMKERNLKKLPG 587 (634)
Q Consensus 570 A~~~~~~~~~~~~~~~~~ 587 (634)
|.+++++....+....|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999988875564
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.65 E-value=0.19 Score=54.83 Aligned_cols=127 Identities=14% Similarity=0.106 Sum_probs=78.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHH
Q 047120 254 NSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE 333 (634)
Q Consensus 254 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 333 (634)
..++..+.+.|.+++|+++.+. . ..-.......|++++|.++.+.+. +...|..+...+.+.|+++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 4555666677777777766542 1 112344566788888888877663 45678888888888888888888
Q ss_pred HHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHH
Q 047120 334 IFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVF 406 (634)
Q Consensus 334 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 406 (634)
.|.++.. |..+...+...|+.+....+-+.....|. ++....+|.+.|++++|++++
T Consensus 703 ~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 703 AFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 8887751 33444444556666665555544444331 223334455566666666654
No 221
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.61 E-value=0.00016 Score=69.87 Aligned_cols=241 Identities=12% Similarity=0.126 Sum_probs=160.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccCCCChhHHHHHHHHHHhcC
Q 047120 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIRERNLISWNSVLNGYAQLK 232 (634)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~ll~~~~~~~ 232 (634)
.+.+|..|..+..+.+.+.+|++-| ++..|...|..+|.+..+.|.+++-+..+...++...+...-+.++-+|++.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhC
Confidence 5567888888888888888777654 34467888899999999999999999999888877666666678999999988
Q ss_pred CcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCC------------------------CChhHHHHHH
Q 047120 233 SGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPK------------------------RDVVSWANMI 288 (634)
Q Consensus 233 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~~~~l~ 288 (634)
+ +.+..+++ ..||......+.+-|...|.++.|.-+|..+.. .++.||..+-
T Consensus 131 r-L~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~ 206 (624)
T 3lvg_A 131 R-LAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC 206 (624)
T ss_dssp S-SSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHT
T ss_pred c-HHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 7 44322211 127777777888899999999999988887752 4667777777
Q ss_pred HHHHHcCChHHHHHH-hhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHH
Q 047120 289 DGYAKLGRVDIARRL-FDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKG 367 (634)
Q Consensus 289 ~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 367 (634)
.+|...+.+.-|... +.-+..+|. ...++..|-..|.+++-+.+++.-... -+.....|+-|.-.|++- ++++.
T Consensus 207 ~ACvd~~EfrLAqicGLniIvhade--L~elv~~YE~~G~f~ELIsLlEaglgl--ErAHmGmFTELaILYsKY-~PeKl 281 (624)
T 3lvg_A 207 FACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKF-KPQKM 281 (624)
T ss_dssp HHHHHSCTTTTTTHHHHHHHCCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTS--TTCCHHHHHHHHHHHHSS-CTTHH
T ss_pred HHHhCchHHHHHHHhcchhcccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHhc-CHHHH
Confidence 777777776655322 111222211 123445567778888888888877621 234556777777666654 34444
Q ss_pred HHHHHHHHH-cCCC------CchhHHHHHHHHhHhcCCHHHHHH
Q 047120 368 VAIHRYLEK-DQFS------LNGKHGVALIDMYSKCGSIENAIK 404 (634)
Q Consensus 368 ~~~~~~~~~-~~~~------~~~~~~~~l~~~~~~~~~~~~A~~ 404 (634)
.+.++..-. .+++ -....|.-++-.|.+-.+++.|..
T Consensus 282 mEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 282 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 443332111 1211 134567777888888888887653
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.59 E-value=0.0098 Score=56.56 Aligned_cols=133 Identities=11% Similarity=0.031 Sum_probs=91.2
Q ss_pred CCCHHHHHHHHHHHh--c---cCCHHHHHHHHHHhHHhcCcccC-hhHHHHHHHHHh----ccCC-------HHHHHHHH
Q 047120 446 EPDDITFTGLLNACA--H---AGLVKEGLLCFELMRRIHKLEPE-LQHYGCMVDILG----RAGH-------IEAARNLI 508 (634)
Q Consensus 446 ~p~~~~~~~ll~~~~--~---~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~----~~g~-------~~~A~~~~ 508 (634)
..+...|...+++.. . .....+|..+|+++.+. .|+ ...|..+..+|. ..+. ...+.+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 445556666665433 2 34468899999999874 565 344444444442 1111 11222222
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 509 EDM-PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 509 ~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
..+ ..+.++.+|..+...+...|++++|...++++++++| +...|..++.++.-.|++++|.+.++++...+.
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 233 2355678888888777778999999999999999996 466788999999999999999999999876644
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.58 E-value=0.0038 Score=50.89 Aligned_cols=90 Identities=11% Similarity=-0.021 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChhH
Q 047120 463 GLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAG---HIEAARNLIEDM-PME-P--NDVIWRTLLSACRNYENLNV 535 (634)
Q Consensus 463 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~ 535 (634)
+....+.+.|.+... .+ .++..+...+..++.+.+ +.++++.++++. ... | ....+..|.-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~-~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 345566666666654 23 356677667777888877 556788888776 223 4 24455666667788888888
Q ss_pred HHHHHHHHhccCCCCCchH
Q 047120 536 GEPVAKHLIGMDSSNSSSY 554 (634)
Q Consensus 536 a~~~~~~~~~~~p~~~~~~ 554 (634)
|.+.++.+++.+|.+..+.
T Consensus 90 A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhcCCCCHHHH
Confidence 8888888888888765443
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.56 E-value=0.01 Score=44.27 Aligned_cols=70 Identities=10% Similarity=0.029 Sum_probs=53.4
Q ss_pred ccChhHHHHHHHHHhccCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 047120 482 EPELQHYGCMVDILGRAGH---IEAARNLIEDM-PMEPN-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNS 551 (634)
Q Consensus 482 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (634)
+.+...+..+..++...++ .++|..++++. ...|+ ......+...+.+.|++++|+..|+++++.+|+++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 3456677777777764444 68888888887 44555 66777777888999999999999999999998843
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.49 E-value=0.084 Score=57.71 Aligned_cols=44 Identities=16% Similarity=0.159 Sum_probs=21.0
Q ss_pred hcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 047120 395 KCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEM 440 (634)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 440 (634)
..|++++|.++.+.+. +...|..+...+.+.++++.|.+.|.++
T Consensus 664 ~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 664 KVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3444555544444332 3344555555555555555555555544
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.44 E-value=0.014 Score=44.76 Aligned_cols=71 Identities=11% Similarity=0.011 Sum_probs=48.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHH
Q 047120 488 YGCMVDILGRAGHIEAARNLIEDM-----P----MEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLS 558 (634)
Q Consensus 488 ~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 558 (634)
+..|+..+.+.|+++.|..-++++ . -.+....+..|..++.+.|+++.|...++++++..|.++.+...+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 334555555555555555555443 0 1234567788888889999999999999999999998877765554
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.24 E-value=0.016 Score=47.25 Aligned_cols=77 Identities=8% Similarity=-0.081 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHHhcCccc--ChhHHHHHHHHHhccCCHHHHHH
Q 047120 432 LAFDLLMEMERLSIEPDDITFTGLLNACAHAG---LVKEGLLCFELMRRIHKLEP--ELQHYGCMVDILGRAGHIEAARN 506 (634)
Q Consensus 432 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 506 (634)
.+.+.|.+..+.|. ++..+...+..++++.+ +.++++.+++.+.+. . .| ..+.+-.|.-+|.+.|++++|.+
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 33444444444332 34444444444555544 344555555555442 1 12 12333344444555555555555
Q ss_pred HHHhC
Q 047120 507 LIEDM 511 (634)
Q Consensus 507 ~~~~~ 511 (634)
.++.+
T Consensus 93 y~~~l 97 (152)
T 1pc2_A 93 YVRGL 97 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.19 E-value=0.013 Score=44.89 Aligned_cols=68 Identities=12% Similarity=-0.095 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC-------CCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 515 PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD-------SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 515 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
.+..-...++..+.+.|+++.|...++++++.. +..+..+..|+.+|.+.|++++|..+++++.+...
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 345556678888999999999999999999863 23456899999999999999999999999976533
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.37 Score=40.29 Aligned_cols=128 Identities=11% Similarity=0.114 Sum_probs=73.6
Q ss_pred HhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 047120 392 MYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC 471 (634)
Q Consensus 392 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 471 (634)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+.-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345567777777776655 3566777777777777777777777776542 22333334445666555544
Q ss_pred HHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047120 472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHL 543 (634)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 543 (634)
-+.... .| -++.-...+.-.|+++++.+++.+.+.-|....+ ....|-.+.|.++.+.+
T Consensus 83 a~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~------A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAV------AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHH------HHHTTCHHHHHHHHHHT
T ss_pred HHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHH------HHHcCcHHHHHHHHHHh
Confidence 444333 11 2444555566777888888777776533322211 12245566666665544
No 230
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.77 E-value=2.2 Score=44.14 Aligned_cols=114 Identities=9% Similarity=-0.057 Sum_probs=64.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHH
Q 047120 428 GLGELAFDLLMEMERLSIEPDDI----TFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA 503 (634)
Q Consensus 428 ~~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 503 (634)
.+.+.|...+....+.+ ..+.. ....+.......+...++...+...... .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 36788888887776432 22322 2333333444455344555555554331 2333333334444456788888
Q ss_pred HHHHHHhCCCCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047120 504 ARNLIEDMPMEP-N-DVIWRTLLSACRNYENLNVGEPVAKHLIG 545 (634)
Q Consensus 504 A~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 545 (634)
|...|+.|+..+ + ..-..-+..++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888884332 2 33333455566777888888888888764
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.87 Score=38.04 Aligned_cols=102 Identities=11% Similarity=0.076 Sum_probs=61.1
Q ss_pred HHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHH
Q 047120 290 GYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVA 369 (634)
Q Consensus 290 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 369 (634)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.++...
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHHHH
Confidence 345667777777776655 3456777777777777777777777776651 3344444555666666665
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhc
Q 047120 370 IHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQI 409 (634)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 409 (634)
+-+.....| -++.....+...|+++++.++|.+.
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 555444443 1233334455566666666665543
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.96 E-value=0.033 Score=50.73 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhHHhcCcccC---hhHHHHHHHHHhcc-----CCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh-cCC
Q 047120 465 VKEGLLCFELMRRIHKLEPE---LQHYGCMVDILGRA-----GHIEAARNLIEDM-PMEPN--DVIWRTLLSACRN-YEN 532 (634)
Q Consensus 465 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~-~g~ 532 (634)
...|...++++.+. .|+ -..|..++..|.+. |+.++|.+.|++. .+.|+ ..++......++. .|+
T Consensus 179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 44555555555542 444 33566677667663 7777777777776 45553 4555566666655 477
Q ss_pred hhHHHHHHHHHhccCCC
Q 047120 533 LNVGEPVAKHLIGMDSS 549 (634)
Q Consensus 533 ~~~a~~~~~~~~~~~p~ 549 (634)
.+++.+.+++++...|.
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 78888888888777665
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.93 E-value=0.22 Score=38.91 Aligned_cols=90 Identities=11% Similarity=-0.023 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChhHHH
Q 047120 465 VKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEA---ARNLIEDM-PME-P--NDVIWRTLLSACRNYENLNVGE 537 (634)
Q Consensus 465 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a~ 537 (634)
...+.+-|..... .+ .++..+--.+..++.+..+..+ ++.++++. ... | .......|.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~-~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHH-HS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444445554443 12 2555665566777777776665 77777766 322 3 1234455666788899999999
Q ss_pred HHHHHHhccCCCCCchHHH
Q 047120 538 PVAKHLIGMDSSNSSSYVL 556 (634)
Q Consensus 538 ~~~~~~~~~~p~~~~~~~~ 556 (634)
+.++.+++..|.+..+...
T Consensus 95 ~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHH
Confidence 9999999999988765543
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.33 E-value=0.13 Score=54.26 Aligned_cols=55 Identities=11% Similarity=0.001 Sum_probs=50.9
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHH
Q 047120 524 LSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMK 578 (634)
Q Consensus 524 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 578 (634)
...|.+.|+++.|.++.++++...|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3446789999999999999999999999999999999999999999999999884
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.12 E-value=0.21 Score=40.11 Aligned_cols=52 Identities=6% Similarity=-0.047 Sum_probs=28.6
Q ss_pred CChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 531 ENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 531 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
+|.++|.++|+.+++....-+..|...+..-.++|+...|.+++.+....+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 5556666666666554333344555555555566666666666655555443
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.91 E-value=0.11 Score=40.65 Aligned_cols=68 Identities=7% Similarity=-0.077 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhH---HHHHHHHHhccC-C-CCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120 514 EPNDVIWRTLLSACRNYENLNV---GEPVAKHLIGMD-S-SNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 514 ~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
.|+..+-..+.+++.+..+... ++.+++.+++.+ | ......+.|+-++.+.|++++|.++++.+.+..
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 4778888889999988776655 999999999887 4 466789999999999999999999999997653
No 237
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=93.53 E-value=3.4 Score=35.84 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=7.2
Q ss_pred CChhHHHHHHHHHHHcCC
Q 047120 279 RDVVSWANMIDGYAKLGR 296 (634)
Q Consensus 279 ~~~~~~~~l~~~~~~~g~ 296 (634)
++..+-...+.++.+.|.
T Consensus 124 ~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 344333344444444433
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.28 E-value=2.4 Score=33.30 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=99.2
Q ss_pred hHhcCCHHHHHHHHHhccC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 047120 393 YSKCGSIENAIKVFEQIED-GSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLC 471 (634)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 471 (634)
+.-.|..++..++..+..+ .+..-||=+|.-....-+-+-..++++.+-+- .| ....|++......
T Consensus 17 ~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi~C 83 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVEC 83 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHHHH
Confidence 4456888888898888764 35555666666666666666666666655431 12 2345666666666
Q ss_pred HHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHHHHh-C-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047120 472 FELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNLIED-M-PMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDS 548 (634)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 548 (634)
+-.+-. +......-++.+..+|+.++-.+++.+ . ..+|++.....+..+|.+.|+..+|.+++.++.+.+-
T Consensus 84 ~~~~n~------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINNT------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTTC------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhcc------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 555432 455667778889999999999999998 4 4568889999999999999999999999999987763
No 239
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.06 E-value=0.63 Score=37.03 Aligned_cols=71 Identities=10% Similarity=0.090 Sum_probs=35.0
Q ss_pred ccChhHHHHHHHHHhccCCHH---HHHHHHHhC-CCCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 047120 482 EPELQHYGCMVDILGRAGHIE---AARNLIEDM-PMEP-N-DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS 552 (634)
Q Consensus 482 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 552 (634)
.|+..+--.+..++.+..+.+ +++.++++. ...| + ......|.-++.+.|++++|.++.+.+++..|.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 344444444455555554433 344555544 1123 1 223333444566666666666666666666665543
No 240
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=92.97 E-value=4 Score=35.04 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=7.1
Q ss_pred CHhHHHHHHHHHHccCC
Q 047120 347 DDASLVIVLSAIAQLGH 363 (634)
Q Consensus 347 ~~~~~~~ll~~~~~~~~ 363 (634)
+...-...+.++...|+
T Consensus 151 ~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGG 167 (201)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33333444444444443
No 241
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.03 E-value=13 Score=38.54 Aligned_cols=263 Identities=9% Similarity=-0.032 Sum_probs=123.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccC-CCChhHHHHHHHHHHhcCCcH
Q 047120 157 QNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR-ERNLISWNSVLNGYAQLKSGL 235 (634)
Q Consensus 157 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~p~~~~~~~ll~~~~~~~~~~ 235 (634)
-+.-+..+.+.+++......+.. ...+...-.....+....|+..+|......+-.. ......+..++..+.+.|. +
T Consensus 75 r~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~-l 152 (618)
T 1qsa_A 75 QSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGK-Q 152 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTC-S
T ss_pred HHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCC-C
Confidence 34455667777888888876666 3334555555667777778876666655554433 2334456667776665444 1
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChh--
Q 047120 236 QFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVV-- 313 (634)
Q Consensus 236 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-- 313 (634)
... ..-.-+......|+...|..+...+..........++..+.+ ...+........ ++..
T Consensus 153 t~~-------------~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~~-~~~~~~ 215 (618)
T 1qsa_A 153 DPL-------------AYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTTG-ATDFTR 215 (618)
T ss_dssp CHH-------------HHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHSC-CCHHHH
T ss_pred CHH-------------HHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhccC-CChhhH
Confidence 111 011113445556666666666665522111122222222222 222222222221 1111
Q ss_pred -hHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHh--HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047120 314 -ACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDA--SLVIVLSAIAQLGHIDKGVAIHRYLEKDQFSLNGKHGVALI 390 (634)
Q Consensus 314 -~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 390 (634)
.+...+.-+.+ .+.+.|...+........+.+... ....+.......+...++...+....... .+.....-.+
T Consensus 216 ~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~ 292 (618)
T 1qsa_A 216 QMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRV 292 (618)
T ss_dssp HHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHH
Confidence 11111222222 256677777766654422222211 11112222223332344444444433322 2222233333
Q ss_pred HHhHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047120 391 DMYSKCGSIENAIKVFEQIEDG---SVDHWNAMINGLAIHGLGELAFDLLMEME 441 (634)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 441 (634)
....+.|+++.|...|+.+... ......=+..++...|+.++|..+|..+.
T Consensus 293 r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 293 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3344567777777777776532 22223334455566677777777776665
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.88 E-value=16 Score=39.51 Aligned_cols=150 Identities=13% Similarity=-0.029 Sum_probs=67.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHH--HHHHHHHhccC
Q 047120 424 LAIHGLGELAFDLLMEMERLSIEPDDITFT--GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHY--GCMVDILGRAG 499 (634)
Q Consensus 424 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g 499 (634)
+...|+.+....++..+.+. .+..... .+.-++...|+.+.+..+.+.+... ..|....- .++.-+|+..|
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSC
T ss_pred hcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCC
Confidence 33445555556666655543 1222222 2222333556666666666666541 11222111 13344566777
Q ss_pred CHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHH--HhcCCC-chHHHHHH
Q 047120 500 HIEAARNLIEDMPMEPNDV--IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNM--FAGLGM-WNDARRVR 574 (634)
Q Consensus 500 ~~~~A~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~-~~~A~~~~ 574 (634)
+.....+++..+.-.++.. ....+.-++...|+.+.+.++++.+.+-. ++..-...+.+ ....|. ..+++.++
T Consensus 575 n~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 7666666666652222222 22222223444566555555554443322 23322222222 222222 25677777
Q ss_pred HHHHhC
Q 047120 575 SMMKER 580 (634)
Q Consensus 575 ~~~~~~ 580 (634)
..+...
T Consensus 653 ~~L~~D 658 (963)
T 4ady_A 653 DPLTKD 658 (963)
T ss_dssp HHHHTC
T ss_pred HHHccC
Confidence 777543
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.63 E-value=11 Score=37.22 Aligned_cols=246 Identities=12% Similarity=0.054 Sum_probs=139.2
Q ss_pred cCCchHHHHHHHHHHhcC----CCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCch--hHHHHHHHHhHhcC
Q 047120 325 NGYSMKALEIFDNMQCEL----YLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD-QFSLNG--KHGVALIDMYSKCG 397 (634)
Q Consensus 325 ~g~~~~A~~~~~~m~~~~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~~~l~~~~~~~~ 397 (634)
.|++++|++.+..+.+.. ...........++..|...++++...+.+..+.+. |..... .....++.......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 377888988887776432 23344567788888999999999988877766543 322211 11222333333333
Q ss_pred CHH--HHHHHHHhccC---C-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHh
Q 047120 398 SIE--NAIKVFEQIED---G-------SVDHWNAMINGLAIHGLGELAFDLLMEMERL--SIEPD---DITFTGLLNACA 460 (634)
Q Consensus 398 ~~~--~A~~~~~~~~~---~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~---~~~~~~ll~~~~ 460 (634)
..+ .-..+.+.+.. . .......|...|...|++.+|..++..+... |..+. ...+..-++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 322 23333333321 1 1123466788888899999999999887643 22222 235666777888
Q ss_pred ccCCHHHHHHHHHHhHHhc-Cc--ccC--hhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 047120 461 HAGLVKEGLLCFELMRRIH-KL--EPE--LQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNV 535 (634)
Q Consensus 461 ~~g~~~~a~~~~~~~~~~~-~~--~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 535 (634)
..+++..|..++.++.... .. .|+ ...+...+..+...+++.+|.+.|.++ ...+...++...
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~------------~~~~~~~~d~~~ 256 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI------------YQTDAIKSDEAK 256 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH------------HHHHHHHSCHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------------HhcccccCCHHH
Confidence 8899999998888875311 11 222 234667777788888888887776654 233333444443
Q ss_pred HHHHHHHHhc---cCCCCCchHHHHHHHHhcC--CCchHHHHHHHHHHhCCC
Q 047120 536 GEPVAKHLIG---MDSSNSSSYVLLSNMFAGL--GMWNDARRVRSMMKERNL 582 (634)
Q Consensus 536 a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~ 582 (634)
...++..++- +.|.++.--..+...+... ...+.-..+.+......+
T Consensus 257 ~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L 308 (445)
T 4b4t_P 257 WKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNEL 308 (445)
T ss_dssp HHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchH
Confidence 3333333321 2455555445555554432 223333344444455544
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.34 E-value=4.6 Score=32.50 Aligned_cols=96 Identities=8% Similarity=0.119 Sum_probs=52.0
Q ss_pred CChhhHHHHHHHHHHcCCc------hHHHHHHHHHHhcCCCCCCHh----HHHHHHH---HHHccCChHHHHHHHHHHHH
Q 047120 310 RDVVACNAMMGGYVRNGYS------MKALEIFDNMQCELYLHPDDA----SLVIVLS---AIAQLGHIDKGVAIHRYLEK 376 (634)
Q Consensus 310 ~~~~~~~~l~~~~~~~g~~------~~A~~~~~~m~~~~~~~p~~~----~~~~ll~---~~~~~~~~~~a~~~~~~~~~ 376 (634)
.|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|..+-- .+...++.+.|.++|+.+++
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4667777777777777887 7777888877754 556431 1111111 11223566666777666655
Q ss_pred cCCCCchhHHHHHHHHhHhcCCHHHHHHHHHh
Q 047120 377 DQFSLNGKHGVALIDMYSKCGSIENAIKVFEQ 408 (634)
Q Consensus 377 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (634)
..-.. ..++....+.-.+.|++..|.+++.+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 42222 44444444444444444444444443
No 245
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=91.25 E-value=6.5 Score=33.67 Aligned_cols=108 Identities=8% Similarity=0.040 Sum_probs=48.2
Q ss_pred CCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCC
Q 047120 248 RDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGY 327 (634)
Q Consensus 248 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 327 (634)
++...-...+.++.+.++.+....+...+..++..+-...+.++.+.++.+....+.+.+.+++..+-...+.++...|.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 33333333344444444433333333333345555555555555555554333333344444555555555555555544
Q ss_pred chHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHc
Q 047120 328 SMKALEIFDNMQCELYLHPDDASLVIVLSAIAQ 360 (634)
Q Consensus 328 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 360 (634)
.++...+..+... ++...-...+.++.+
T Consensus 168 -~~~~~~L~~~l~d----~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 168 -ERVRAAMEKLAET----GTGFARKVAVNYLET 195 (201)
T ss_dssp -HHHHHHHHHHHHH----CCHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHhC----CCHHHHHHHHHHHHH
Confidence 3455555555433 344333444444433
No 246
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.04 E-value=9.7 Score=35.29 Aligned_cols=169 Identities=14% Similarity=0.014 Sum_probs=99.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHHh
Q 047120 385 HGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFD----LLMEMERLSIEPDDITFTGLLNACA 460 (634)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~----~~~~m~~~g~~p~~~~~~~ll~~~~ 460 (634)
.|.++..=|.+.+++++|++++.. -...+.+.|+...|.+ +++-..+.++.++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 445666668888888888888643 2344556677655544 3555666788888877777777665
Q ss_pred ccCCHH-HHHHHHHHhHH---hcC--cccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---C
Q 047120 461 HAGLVK-EGLLCFELMRR---IHK--LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNY---E 531 (634)
Q Consensus 461 ~~g~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---g 531 (634)
.-..-+ .=.++.+.+.+ ..| -.-++.....+...|.+.|++.+|..-|-- +...|...+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccHHHHHHHHHHHHHhcCCC
Confidence 422111 11222222222 011 123567788889999999999999987752 2122455555555444333 4
Q ss_pred ChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 532 NLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 532 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
...++--++-+ .+--|.-.|+...|..+++...+
T Consensus 183 ~~~e~dlf~~R--------------aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAEFFSR--------------LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHHHHH--------------HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHHHHHH--------------HHHHHHHhcCHHHHHHHHHHHHH
Confidence 43333222222 22346678899999999887643
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.03 E-value=9.7 Score=35.29 Aligned_cols=183 Identities=10% Similarity=0.048 Sum_probs=108.1
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHH--
Q 047120 257 LHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEI-- 334 (634)
Q Consensus 257 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-- 334 (634)
+......|++=+|.+.+ .++..-|.+.+++++|.+++..- ...+.+.|+...|.++
T Consensus 20 l~~~I~~G~yYEAhQ~~-----------Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTL-----------RTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHH
T ss_pred HHHHhhccChHHHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHH
Confidence 44556677777777544 46777788888888888776432 3445566766655554
Q ss_pred --HHHHHhcCCCCCCHhHHHHHHHHHHccC--Ch---HHHHHHHHHHHHcCC--CCchhHHHHHHHHhHhcCCHHHHHHH
Q 047120 335 --FDNMQCELYLHPDDASLVIVLSAIAQLG--HI---DKGVAIHRYLEKDQF--SLNGKHGVALIDMYSKCGSIENAIKV 405 (634)
Q Consensus 335 --~~~m~~~~~~~p~~~~~~~ll~~~~~~~--~~---~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 405 (634)
.+-..+. +++++......++..+.... .. +-.....++..+.|- .-++.....+...|.+.|++.+|+..
T Consensus 78 llvev~~~~-~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H 156 (312)
T 2wpv_A 78 YLLEVYDLA-EVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERY 156 (312)
T ss_dssp HHHHHHHHT-TCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 3333333 67777777777776665432 11 122233333334332 24778888899999999999999988
Q ss_pred HHhccCCChhHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047120 406 FEQIEDGSVDHWNAMINGLAIH---GLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477 (634)
Q Consensus 406 ~~~~~~~~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 477 (634)
|-.....++..+..++.-+... |...++--++- ..+--|.-.++...|..+++...+
T Consensus 157 ~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~---------------RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 157 FMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS---------------RLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH---------------HHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHH---------------HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 7643333455555554444433 33333221111 112234457888888888887654
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.97 E-value=10 Score=35.43 Aligned_cols=169 Identities=11% Similarity=0.030 Sum_probs=100.0
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHh
Q 047120 385 HGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDL----LMEMERLSIEPDDITFTGLLNACA 460 (634)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~ 460 (634)
+|.++..=|.+.+++++|++++-. -...+.+.|+...|.++ ++-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 445666668888999999887643 23345556665554443 355556677888777777777666
Q ss_pred ccCCHH-HHHHHHHHhHH---hcC--cccChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 047120 461 HAGLVK-EGLLCFELMRR---IHK--LEPELQHYGCMVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLN 534 (634)
Q Consensus 461 ~~g~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 534 (634)
....-+ .=..+.+.+.+ +.| -.-|......+...|.+.|++.+|..-|= .+..+....+..++.-+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCc
Confidence 544211 11222222222 122 22356677788999999999999998884 343444466655554444433322
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHh
Q 047120 535 VGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKE 579 (634)
Q Consensus 535 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (634)
++--++- ..+--|.-.|+...|..+++...+
T Consensus 185 e~dlfia--------------RaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 TAPLYCA--------------RAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GHHHHHH--------------HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHH--------------HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2222222 223447778899999888776654
No 249
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=90.48 E-value=8 Score=33.40 Aligned_cols=80 Identities=10% Similarity=0.091 Sum_probs=36.0
Q ss_pred CChhHHHHHHHHHHhcCCcHHHHHHHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcC
Q 047120 216 RNLISWNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG 295 (634)
Q Consensus 216 p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 295 (634)
++...-...+.++.+.+. .+....+.+.+..++...-...+.++.+.+..+....+...+..++..+-...+.++.+.+
T Consensus 93 ~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGD-ERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCc-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 333333344444444443 2222333333333555555555555555555443333333344455555555555555554
Q ss_pred C
Q 047120 296 R 296 (634)
Q Consensus 296 ~ 296 (634)
.
T Consensus 172 ~ 172 (211)
T 3ltm_A 172 G 172 (211)
T ss_dssp S
T ss_pred c
Confidence 4
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.44 E-value=0.39 Score=37.70 Aligned_cols=71 Identities=10% Similarity=0.086 Sum_probs=36.0
Q ss_pred cChhHHHHHHHHHhccCCH---HHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCch
Q 047120 483 PELQHYGCMVDILGRAGHI---EAARNLIEDM-PMEPN--DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSS 553 (634)
Q Consensus 483 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 553 (634)
|+..+--.+..++.+..+. .+++.++++. ...|. ...+..|.-++.+.|++++|.+..+.+++..|.+..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4444444444555554443 2355555544 22231 2244445555666666666666666666666665443
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.19 E-value=16 Score=35.13 Aligned_cols=162 Identities=9% Similarity=-0.055 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHcC-CCC---chhHHHHHHHHhHhc-CCHHHHHHHHHhccC---CChhHH---
Q 047120 349 ASLVIVLSAIAQLGHIDKGVAIHRYLEKDQ-FSL---NGKHGVALIDMYSKC-GSIENAIKVFEQIED---GSVDHW--- 417 (634)
Q Consensus 349 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~---~~~~~~--- 417 (634)
.....+...+.+.|+.++...++......- .-+ .......+++.+... +..+.-.++..+..+ ..-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777766554321 011 223445566665543 223333333333221 111122
Q ss_pred ---HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-cccChhH-
Q 047120 418 ---NAMINGLAIHGLGELAFDLLMEMERLSIEPDD-----ITFTGLLNACAHAGLVKEGLLCFELMRRIHK-LEPELQH- 487 (634)
Q Consensus 418 ---~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~- 487 (634)
..++..|...|++.+|.+++.++.+.--..|. ..+..-+..|...+++.++...+..+....+ +.+++.+
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 24667777777777777777776653212121 2344455566677777777777766654221 1122222
Q ss_pred ---HHHHHHHHh-ccCCHHHHHHHHHh
Q 047120 488 ---YGCMVDILG-RAGHIEAARNLIED 510 (634)
Q Consensus 488 ---~~~l~~~~~-~~g~~~~A~~~~~~ 510 (634)
...-+..+. ..++|.+|...|-+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 112223344 56777777766655
No 252
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.95 E-value=29 Score=37.64 Aligned_cols=249 Identities=10% Similarity=-0.011 Sum_probs=126.6
Q ss_pred HHHHcCChHHHHHHhhhCCC----CCh--hhHHHHHHHHHHcCCchHHHHHHHHHHhcCC-CC-----CCHhHHHHHHHH
Q 047120 290 GYAKLGRVDIARRLFDEMPK----RDV--VACNAMMGGYVRNGYSMKALEIFDNMQCELY-LH-----PDDASLVIVLSA 357 (634)
Q Consensus 290 ~~~~~g~~~~A~~~~~~~~~----~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~-----p~~~~~~~ll~~ 357 (634)
+....|+.++++.+++.... .+. ..-..+.-+....|..+++++++........ +. +....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45567777788887777654 121 1222334455666666677777776654311 00 111111222222
Q ss_pred HHccCC-hHHHHHHHHHHHHcCCCCch--hHHHHHHHHhHhcCCHHHHHHHHHhccC-CChhH--HHHHHHHHHHcCChH
Q 047120 358 IAQLGH-IDKGVAIHRYLEKDQFSLNG--KHGVALIDMYSKCGSIENAIKVFEQIED-GSVDH--WNAMINGLAIHGLGE 431 (634)
Q Consensus 358 ~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~--~~~li~~~~~~~~~~ 431 (634)
....|. -+++...+..+....- ... ..-.++...+...|+-+....++..+.+ .+... .-.+.-++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 232332 2344555554444221 111 1122333445566777666666665432 22222 233334445678888
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHH---HHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCCHHHHHHH
Q 047120 432 LAFDLLMEMERLSIEPDDI-TFT---GLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGHIEAARNL 507 (634)
Q Consensus 432 ~A~~~~~~m~~~g~~p~~~-~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 507 (634)
.+..+++.+... .++. -|. .+.-+|+..|+.....+++..+..+ ...++.....+.-++...|+.+.+.++
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 888888877763 2332 232 3445677888888777788888762 222333344444455556666666677
Q ss_pred HHhCC--CCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHh
Q 047120 508 IEDMP--MEPNDVIWRTLLSACRNYENL-NVGEPVAKHLI 544 (634)
Q Consensus 508 ~~~~~--~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 544 (634)
++.+. ..|....-..+.-+....|.. .++...+..+.
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 66552 233333223333333444443 56777777775
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.61 E-value=0.82 Score=44.54 Aligned_cols=53 Identities=9% Similarity=-0.119 Sum_probs=24.7
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHH
Q 047120 525 SACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMM 577 (634)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 577 (634)
.++...|+++++...++.++..+|-+...|..++.+|.+.|+..+|.+.|++.
T Consensus 179 ~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 179 EAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444443
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.40 E-value=3.2 Score=30.59 Aligned_cols=63 Identities=10% Similarity=0.090 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHH
Q 047120 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493 (634)
Q Consensus 429 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 493 (634)
+.-+..+-++.+....+.|++......+++|-+.+++.-|.++++.++.+.+. ...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 45567777788888889999999999999999999999999999999875543 3556777664
No 255
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.23 E-value=17 Score=34.00 Aligned_cols=183 Identities=13% Similarity=0.031 Sum_probs=105.4
Q ss_pred HHHHHhcCCh---HHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHH
Q 047120 257 LHGCVKCGKM---DDAQALFDKMPKRDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALE 333 (634)
Q Consensus 257 ~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 333 (634)
+...+..|++ =+|.+. |.++..-|.+.+++++|.+++.. -...+.+.|+...+.+
T Consensus 19 l~~~I~~G~y~~~YEAHQ~-----------~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~D 76 (336)
T 3lpz_A 19 LQRRIAEGQPEEQYEAAQE-----------TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGD 76 (336)
T ss_dssp HHHHHHHCCHHHHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHH
T ss_pred HHHHHhCCCCccccHHHHH-----------HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHH
Confidence 3455667887 666654 44667778888999998887642 2344555666655544
Q ss_pred HH----HHHHhcCCCCCCHhHHHHHHHHHHccCChH-HHHHHHHHH----HHcC--CCCchhHHHHHHHHhHhcCCHHHH
Q 047120 334 IF----DNMQCELYLHPDDASLVIVLSAIAQLGHID-KGVAIHRYL----EKDQ--FSLNGKHGVALIDMYSKCGSIENA 402 (634)
Q Consensus 334 ~~----~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 402 (634)
+- +-..+. ++++|......++..+.....-+ .=..+.+.+ .+.| -.-++.....+...|.+.+++.+|
T Consensus 77 L~~llvevy~~~-~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~A 155 (336)
T 3lpz_A 77 LAVLLVDTFRQA-GQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAA 155 (336)
T ss_dssp HHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 43 333333 67777777777776665544311 112233333 3333 334678888899999999999999
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047120 403 IKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR 477 (634)
Q Consensus 403 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 477 (634)
...|-.-.++++..|..++.-+...+...++ +...- ..+--|.-.++...|..+++...+
T Consensus 156 e~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfia-RaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 156 EKHLVLGTKESPEVLARMEYEWYKQDESHTA--------------PLYCA-RAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHH-HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHH-HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9888532333335555544444333321111 11111 222235557788888887766554
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.85 E-value=8.7 Score=31.50 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=18.1
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhcc
Q 047120 383 GKHGVALIDMYSKCGSIENAIKVFEQIE 410 (634)
Q Consensus 383 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (634)
...-.-+..+|.+.+++++|+.+++.++
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 3444456667777777777777777665
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.62 E-value=2.3 Score=34.91 Aligned_cols=54 Identities=7% Similarity=-0.125 Sum_probs=29.3
Q ss_pred HHHHHhHhcCCHHHHHHHHHhcc-----CCCh-------hHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047120 388 ALIDMYSKCGSIENAIKVFEQIE-----DGSV-------DHWNAMINGLAIHGLGELAFDLLMEME 441 (634)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~m~ 441 (634)
.-+..+...+.++.|+-+.+.+. ++++ .++..+..++...+++.+|...|++..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34555666666776666655543 1221 134445555666666666666666543
No 258
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.37 E-value=2.9 Score=44.24 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=22.4
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 553 SYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 553 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
-|-.||.+..+.+++++|.+.|+.......
T Consensus 615 EWEiLGlla~RL~h~~EA~~a~~~~l~~RF 644 (754)
T 4gns_B 615 EWELLGLIMLRTWHWEDAVACLRTSIVARF 644 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 477788888888888888888877765543
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.27 E-value=14 Score=41.71 Aligned_cols=163 Identities=10% Similarity=0.100 Sum_probs=97.4
Q ss_pred HHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChH
Q 047120 286 NMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHID 365 (634)
Q Consensus 286 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 365 (634)
.++..+.+.+..+.+.++...... +...-..+..++...|++++|.+.|++... |+..+..... ...
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~~----------~~~ 883 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFA----------VLR 883 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSCS----------SHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhhh----------hhc
Confidence 455566677777777766655544 333345567778888888888888877642 2322211000 000
Q ss_pred HHHHHHHHHHHcC--CCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc----CCCh----hHHHHHHHHHHHcCChHHHHH
Q 047120 366 KGVAIHRYLEKDQ--FSLNGKHGVALIDMYSKCGSIENAIKVFEQIE----DGSV----DHWNAMINGLAIHGLGELAFD 435 (634)
Q Consensus 366 ~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~~~~~~A~~ 435 (634)
. +..+.... ...-...|..++..+.+.+.++.+.++-.... ..+. ..|..+...+...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 01111110 11223456677778888888887776665433 2222 258888899999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 047120 436 LLMEMERLSIEPDDITFTGLLNACAHAGLVKE 467 (634)
Q Consensus 436 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 467 (634)
.+-.+-.... -...+..++..++..|..+.
T Consensus 960 aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 960 ALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 9888776432 34567777777776666443
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.15 E-value=3.9 Score=46.34 Aligned_cols=65 Identities=6% Similarity=-0.074 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc-----hHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 518 VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSS-----SYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 518 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
.-|..++..+.+.|.++.+.++.+.+++..+.+.. .|..+...+...|++++|...+-.+.+...
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 34566666777778888888887777766533322 456666777777888888887777765544
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.68 E-value=3.8 Score=31.99 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=43.0
Q ss_pred HHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 047120 103 ALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLIS 162 (634)
Q Consensus 103 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 162 (634)
...-++.+....+.|++......+++|.+.+|+..|..+++-++..- .+...+|..+++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 44556666677788888888888888888888888888888776543 333556666554
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.74 E-value=4.4 Score=32.24 Aligned_cols=69 Identities=6% Similarity=-0.159 Sum_probs=28.8
Q ss_pred CchhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHH
Q 047120 44 KNTHLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLD 112 (634)
Q Consensus 44 ~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 112 (634)
|++.+--.+.-++.++.......++..+++.+-+..+.......-.+.-++.+.|++++|++..+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344443334444444444333344444444444322211122222333344455555555555555554
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.30 E-value=13 Score=33.39 Aligned_cols=121 Identities=14% Similarity=0.135 Sum_probs=65.1
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChh----HHHHHHHHHhc
Q 047120 423 GLAIHGLGELAFDLLMEMERLSIEP-DDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQ----HYGCMVDILGR 497 (634)
Q Consensus 423 ~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~ 497 (634)
...+.|+.++|++....-++. .| |...-..++..+|-.|+|+.|.+-++...+. .|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH---
Confidence 344567777777777766665 34 3455566777777777777777777776652 34422 23333322
Q ss_pred cCCHHHHH-HHHHhC--C--CCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHhccCCCCCchHH
Q 047120 498 AGHIEAAR-NLIEDM--P--MEPNDVIWRTLLSAC--RNYENLNVGEPVAKHLIGMDSSNSSSYV 555 (634)
Q Consensus 498 ~g~~~~A~-~~~~~~--~--~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (634)
+... ++|.-- + ......-...++.+. ...|+.++|.++-..+.+.-|..+...+
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~ 138 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 138 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence 1111 122111 0 111122223344443 3467777777777777777766655443
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.87 E-value=7.2 Score=30.51 Aligned_cols=63 Identities=11% Similarity=0.142 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHH
Q 047120 429 LGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVD 493 (634)
Q Consensus 429 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 493 (634)
+.-+..+-++.+....+.|++......+++|-+.+++.-|.++++.++.+.+ +...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 3445667777788888999999999999999999999999999999987544 44566777764
No 265
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.76 E-value=39 Score=33.31 Aligned_cols=199 Identities=8% Similarity=-0.021 Sum_probs=120.7
Q ss_pred CChHHHHHHhhhCCC---------CChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhH--HHHHHHHHHccCC
Q 047120 295 GRVDIARRLFDEMPK---------RDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDAS--LVIVLSAIAQLGH 363 (634)
Q Consensus 295 g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~~~~ 363 (634)
|+++.|.+.+-.+.+ ........++..|...|+++...+.+..+....|..+...+ ...++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 678888877655442 23445777889999999999998888877755454443322 1222233333343
Q ss_pred hHHHHH--HHHHHHH--cC-CCC---chhHHHHHHHHhHhcCCHHHHHHHHHhccC----C-----ChhHHHHHHHHHHH
Q 047120 364 IDKGVA--IHRYLEK--DQ-FSL---NGKHGVALIDMYSKCGSIENAIKVFEQIED----G-----SVDHWNAMINGLAI 426 (634)
Q Consensus 364 ~~~a~~--~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~-----~~~~~~~li~~~~~ 426 (634)
.+.... ....... .| +-. .......|...|...|++.+|..++..+.. . -+..+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 332222 1111110 11 111 233456788999999999999999998751 1 13367777889999
Q ss_pred cCChHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccChhHHHHHHHHHhccCC
Q 047120 427 HGLGELAFDLLMEMER----LSIEPDD--ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPELQHYGCMVDILGRAGH 500 (634)
Q Consensus 427 ~~~~~~A~~~~~~m~~----~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 500 (634)
.+++.+|..++.++.. ....|+. ..+...+..+...+++.+|.+. |..+...+...++
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~----------------y~e~~~~~~~~~d 253 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY----------------LQEIYQTDAIKSD 253 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH----------------HHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH----------------HHHHHhcccccCC
Confidence 9999999999998642 2222222 2455566666777777776554 3334555666666
Q ss_pred HHHHHHHHH
Q 047120 501 IEAARNLIE 509 (634)
Q Consensus 501 ~~~A~~~~~ 509 (634)
.......+.
T Consensus 254 ~~~~~~~L~ 262 (445)
T 4b4t_P 254 EAKWKPVLS 262 (445)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655444443
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.67 E-value=2.1 Score=38.40 Aligned_cols=53 Identities=9% Similarity=-0.039 Sum_probs=27.3
Q ss_pred HhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 528 RNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
.+.|++++++..++..++.+|.|...-..|..+|+-.|+|+.|.+.++...+.
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34455555555555555555555555555555555555555555555544443
No 267
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=79.86 E-value=2.6 Score=33.02 Aligned_cols=65 Identities=8% Similarity=-0.018 Sum_probs=29.3
Q ss_pred CCCcccHHHHHHHHHcCCCc---chHHHHHHHHHHCCCCCC--cchHHHHHHHHhccCChHHHHHHHHHHHH
Q 047120 81 KKDPFLWNAIIKTYSHGLDP---KEALVMFCLMLDNGVSVD--KFSASLVLKACSRLGLIEEGLQIHGLLRK 147 (634)
Q Consensus 81 ~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 147 (634)
.|+..+--....++.++.+. .+++.+++++.+.+ |. ...+-.+.-++.+.|+++.|++..+.+++
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444444444444444332 24555555555433 21 12233333445555555555555555554
No 268
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=79.13 E-value=13 Score=36.04 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCcccChhH
Q 047120 418 NAMINGLAIHGLGELAFDLLMEMERLSIEPDDITFTGLLNACAHAGLVKEGLLCFELMRR----IHKLEPELQH 487 (634)
Q Consensus 418 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 487 (634)
..++..+...|++++|+..+..+.... .-+...+..++.++.+.|+..+|++.|+.+.+ ..|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345566667777777777777766541 22455777777777777777777777776544 2466666554
No 269
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=78.88 E-value=17 Score=26.80 Aligned_cols=49 Identities=14% Similarity=0.260 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHH
Q 047120 511 MPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSN 559 (634)
Q Consensus 511 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 559 (634)
+.+-|++....+.+.+|++.+++..|+++++-+...-.+....|-.+..
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 3567999999999999999999999999998876555444455655543
No 270
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=76.85 E-value=55 Score=31.50 Aligned_cols=126 Identities=6% Similarity=0.044 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHhhhCCC--------CChhhHHHHHHHHHHc-CCchHHHHHHHHHHhcCCCCCCHhHH-
Q 047120 282 VSWANMIDGYAKLGRVDIARRLFDEMPK--------RDVVACNAMMGGYVRN-GYSMKALEIFDNMQCELYLHPDDASL- 351 (634)
Q Consensus 282 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~~p~~~~~- 351 (634)
.....|...|.+.|+.++...++..... +....-..++..+... +..+.-+++..+..+-. .-+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a--~~~~r~fl 97 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA--KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH--HHTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 3556778888888888888888877654 1223445555555553 33333444444443220 1111222
Q ss_pred -----HHHHHHHHccCChHHHHHHHHHHHHcCCCCc-----hhHHHHHHHHhHhcCCHHHHHHHHHhc
Q 047120 352 -----VIVLSAIAQLGHIDKGVAIHRYLEKDQFSLN-----GKHGVALIDMYSKCGSIENAIKVFEQI 409 (634)
Q Consensus 352 -----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~ 409 (634)
..++..+...|++.+|..++..+.+.--..| ..++..-+.+|...+++..+...+...
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1455566667777777666666654211111 233444455666666666666666544
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.80 E-value=21 Score=30.36 Aligned_cols=49 Identities=6% Similarity=0.028 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHhC---CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047120 499 GHIEAARNLIEDM---PME-PNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD 547 (634)
Q Consensus 499 g~~~~A~~~~~~~---~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 547 (634)
+...++.++|.-| ++- --...|......+...|++++|..+|+..++..
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3344555555554 222 234455555555666666666666666666544
No 272
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=73.36 E-value=91 Score=32.39 Aligned_cols=43 Identities=26% Similarity=0.169 Sum_probs=22.9
Q ss_pred cHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHh
Q 047120 86 LWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACS 130 (634)
Q Consensus 86 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 130 (634)
.| .+|-.+.|+|+.++|.++.++.... +.--...|...+..++
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~ 197 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYA 197 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC-
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHH
Confidence 45 5566667777777777777654431 1111235556666665
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.18 E-value=30 Score=33.98 Aligned_cols=57 Identities=14% Similarity=0.058 Sum_probs=31.7
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhccC------CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047120 385 HGVALIDMYSKCGSIENAIKVFEQIED------GSVDHWNAMINGLAIHGLGELAFDLLMEME 441 (634)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 441 (634)
+...+.+.|.+.|+++.|.+.|.++.. .-...+-..+..+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 444566666666666666666665542 122345555555555666666665555543
No 274
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=70.53 E-value=46 Score=30.72 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=43.0
Q ss_pred HhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120 509 EDMPMEPND--VIWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 509 ~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
-..++.|.. .+....+..+.+.+++..|..+.+++++++|... ..++|.+++....+.+
T Consensus 197 T~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 197 TKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 333666664 3667778889999999999999999999998521 3355777777665543
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.28 E-value=17 Score=35.76 Aligned_cols=95 Identities=6% Similarity=-0.074 Sum_probs=50.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhc-CcccChhHHHHHHHHHhccCCHHHHHHHHHhC----CC--CCCHHHH--H
Q 047120 451 TFTGLLNACAHAGLVKEGLLCFELMRRIH-KLEPELQHYGCMVDILGRAGHIEAARNLIEDM----PM--EPNDVIW--R 521 (634)
Q Consensus 451 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~p~~~~~--~ 521 (634)
+...+...+.+.|+++.|.+.+.++.... +...-...+-.++..+...+++..+...+.++ .. .|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 55566666677777777777777666521 11122445566666666677777766666655 11 1222111 1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhc
Q 047120 522 TLLSACRNYENLNVGEPVAKHLIG 545 (634)
Q Consensus 522 ~l~~~~~~~g~~~~a~~~~~~~~~ 545 (634)
.-+..+...+++..|-..|-.+..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111123445666666666655543
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=68.01 E-value=40 Score=27.20 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=28.6
Q ss_pred HHHHHHHHhccC--CCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCCc
Q 047120 536 GEPVAKHLIGMD--SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNLK 583 (634)
Q Consensus 536 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (634)
+..+|+.+...+ -..+..|...+..+...|++++|.++++.-.+.+.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 555666655443 344455666666666666666666666666555443
No 277
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=67.34 E-value=34 Score=25.09 Aligned_cols=86 Identities=17% Similarity=0.202 Sum_probs=52.9
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047120 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMER 442 (634)
Q Consensus 363 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 442 (634)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|.. .+.|-.+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666655443 22222222345667788888888888887788877766543 466777777777767766
Q ss_pred CCCCCCHHHHH
Q 047120 443 LSIEPDDITFT 453 (634)
Q Consensus 443 ~g~~p~~~~~~ 453 (634)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 54 44444443
No 278
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=66.17 E-value=37 Score=24.99 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=53.2
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047120 363 HIDKGVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAFDLLMEMER 442 (634)
Q Consensus 363 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 442 (634)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|.. .+.|-.+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666655543 22222223345667788888888888888888887776643 356777777777767766
Q ss_pred CCCCCCHHHHH
Q 047120 443 LSIEPDDITFT 453 (634)
Q Consensus 443 ~g~~p~~~~~~ 453 (634)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 54 44444443
No 279
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=65.77 E-value=76 Score=28.49 Aligned_cols=82 Identities=5% Similarity=-0.080 Sum_probs=36.0
Q ss_pred CCCchHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcC--ChHHHHHHhhhCCCCChhhHHHHHHHHHH
Q 047120 247 ERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRDVVSWANMIDGYAKLG--RVDIARRLFDEMPKRDVVACNAMMGGYVR 324 (634)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 324 (634)
.++..+-...+.++...|+.+..-.+...+..++..+-...+.++.+.| ..+-...+.+.+.+++..+-...+.++.+
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3555544455555555554332223333333455555445555555444 22222233333344555555555555555
Q ss_pred cCCc
Q 047120 325 NGYS 328 (634)
Q Consensus 325 ~g~~ 328 (634)
.|+.
T Consensus 219 ~~~~ 222 (280)
T 1oyz_A 219 RKDK 222 (280)
T ss_dssp TTCG
T ss_pred hCCH
Confidence 5543
No 280
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=64.55 E-value=1e+02 Score=29.82 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=8.8
Q ss_pred HHHHhcCCHHHHHHHHhh
Q 047120 162 SLYVRCGYLEFARQLFDK 179 (634)
Q Consensus 162 ~~~~~~g~~~~A~~~~~~ 179 (634)
...+..|+.+-+.-+++.
T Consensus 85 ~~A~~~g~~~~v~~Ll~~ 102 (437)
T 1n11_A 85 HCAARIGHTNMVKLLLEN 102 (437)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhC
Confidence 333445555555555544
No 281
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=63.88 E-value=41 Score=24.71 Aligned_cols=76 Identities=14% Similarity=-0.001 Sum_probs=52.9
Q ss_pred ChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCcc
Q 047120 134 LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPI 213 (634)
Q Consensus 134 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 213 (634)
..++|..+-+.+...|. ...+--.-+..+...|++++|..+.+....||...|.+|.. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 56777777777766543 22233333466778899999999999999999999887755 356777777766655544
No 282
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=63.07 E-value=85 Score=28.14 Aligned_cols=48 Identities=6% Similarity=-0.087 Sum_probs=19.0
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcC
Q 047120 279 RDVVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNG 326 (634)
Q Consensus 279 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 326 (634)
++..+-...+..+.+.|..+....+.+.+..++...-...+.++.+.|
T Consensus 35 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 333333334444444443322222333333344444444444444444
No 283
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=62.65 E-value=43 Score=24.61 Aligned_cols=76 Identities=16% Similarity=0.039 Sum_probs=51.8
Q ss_pred ChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCcc
Q 047120 134 LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMPI 213 (634)
Q Consensus 134 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 213 (634)
..++|..+-+.+...|. ...+--.-+..+...|++++|..+.+...-||...|.+|... +.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 56777777777666543 222223334567788999999999999998999988877654 55666666666655544
No 284
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.65 E-value=78 Score=26.90 Aligned_cols=55 Identities=13% Similarity=0.070 Sum_probs=36.3
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCccc
Q 047120 428 GLGELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEP 483 (634)
Q Consensus 428 ~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 483 (634)
+...++.++|..|..+|+--. ..-|......+...|++.+|.++|+.-.+ .+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~-~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE-NNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCcc
Confidence 335577777777777776555 33566666667777777777777777666 34445
No 285
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=60.08 E-value=71 Score=26.25 Aligned_cols=83 Identities=10% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC-CCCCc-----------------
Q 047120 491 MVDILGRAGHIEAARNLIEDMPMEPNDVIWRTLLSACRNYENLNVGEPVAKHLIGMD-SSNSS----------------- 552 (634)
Q Consensus 491 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~~~----------------- 552 (634)
+.-.+.-.|.+..++-++.... .....-|..|. |.+..++..|...++.+++-. ..+|+
T Consensus 39 ~~I~LyyngEY~R~Lf~L~~lN-T~Ts~YYk~LC--y~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEf 115 (242)
T 3kae_A 39 MSIVLYLNGEYTRALFHLHKLN-TCTSKYYESLC--YKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEF 115 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCC-BHHHHHHHHHH--HHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHH
T ss_pred hhhhhhhcchHhHHHHHHHhcc-hHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHH
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHH
Q 047120 553 SYVLLSNMFAGLGMWNDARRVRSM 576 (634)
Q Consensus 553 ~~~~l~~~~~~~g~~~~A~~~~~~ 576 (634)
.|..++.++...|+.+||+..+..
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhh
No 286
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.30 E-value=55 Score=26.79 Aligned_cols=47 Identities=9% Similarity=0.002 Sum_probs=23.0
Q ss_pred HHHHHHHHhccC--CCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCCC
Q 047120 536 GEPVAKHLIGMD--SSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERNL 582 (634)
Q Consensus 536 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (634)
...+|+.+...+ -..+..|...+..+...|++.+|.++++.-.+.+.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 334444444332 33344555555555555555555555555555443
No 287
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=56.32 E-value=61 Score=27.28 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCCCCCHH--H-----HHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCch
Q 047120 501 IEAARNLIEDMPMEPNDV--I-----WRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWN 568 (634)
Q Consensus 501 ~~~A~~~~~~~~~~p~~~--~-----~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 568 (634)
++.|+.+|+.++-.-|.. . -...+..|.+.|.+++|.+++++.+..++.+...-.-|..+-.+...+.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H 168 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFH 168 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCc
Confidence 456666666663222211 1 1223445888999999999999988877666665555555554444433
No 288
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=53.38 E-value=1.4e+02 Score=31.09 Aligned_cols=20 Identities=10% Similarity=0.049 Sum_probs=13.1
Q ss_pred HHHHHHHcCCchHHHHHHHH
Q 047120 318 MMGGYVRNGYSMKALEIFDN 337 (634)
Q Consensus 318 l~~~~~~~g~~~~A~~~~~~ 337 (634)
....+.-.|+++.|++.+-.
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~ 319 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYT 319 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHh
Confidence 34555667777777776653
No 289
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=49.80 E-value=1.4e+02 Score=26.92 Aligned_cols=142 Identities=12% Similarity=0.062 Sum_probs=61.5
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcc---hHHHHHHH
Q 047120 52 LVASFSSSPCTPLTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKF---SASLVLKA 128 (634)
Q Consensus 52 li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~ 128 (634)
.+...+..|+. +-+..+++. +..++...-.+.+...+..|+.+ +++.+.+.|..++.. ..+.+. .
T Consensus 34 ~L~~A~~~g~~---~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~~~~d~~g~t~L~-~ 101 (285)
T 3kea_A 34 ASYYAIADNNV---RLVCTLLNA----GALKNLLENEFPLHQAATLEDTK----IVKILLFSGLDDSQFDDKGNTALY-Y 101 (285)
T ss_dssp HHHHHHHTTCH---HHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCH----HHHHHHHTTCCTTCCCTTSCCHHH-H
T ss_pred HHHHHHHcCCH---HHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCcHHH-H
Confidence 34444556664 444444443 22222221123344444556544 334444555554432 222232 2
Q ss_pred HhccCChHHHHHHHHHHHHhcCCCChhH---HHHHHHHHHhcCCHHHHHHHHhhCCCC-ChhHHHHHHHHHHhCCChHHH
Q 047120 129 CSRLGLIEEGLQIHGLLRKVAFGSDLFL---QNCLISLYVRCGYLEFARQLFDKMGIR-DSVSYNSMIDGYVKSGNIESA 204 (634)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A 204 (634)
.+..|+.+ +.+.+++.|..++... +.+.+...+..|+.+-+..+++.-... +...-.+.+...+..|+.+-+
T Consensus 102 A~~~g~~~----~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 102 AVDSGNMQ----TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp HHHTTCHH----HHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHH----HHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHH
Confidence 33445544 3333444454433221 123444555667776666666554332 221222333344455665554
Q ss_pred HHHHh
Q 047120 205 RELFD 209 (634)
Q Consensus 205 ~~~~~ 209 (634)
.-+++
T Consensus 178 ~~Ll~ 182 (285)
T 3kea_A 178 ILLLD 182 (285)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 290
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=46.84 E-value=36 Score=22.20 Aligned_cols=51 Identities=6% Similarity=-0.224 Sum_probs=30.7
Q ss_pred CHHHHHHHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCc
Q 047120 64 LTEFARYIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDK 119 (634)
Q Consensus 64 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 119 (634)
..++....+..| -|+......--..-...|+.+.|+..+-.|...+..|+.
T Consensus 8 ~~ee~l~~L~em-----FP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 8 CSEEDLKAIQDM-----FPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp SCHHHHHHHHHH-----CSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred CCHHHHHHHHHH-----CCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 346677777776 345544322222223457888888888888776666653
No 291
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.05 E-value=53 Score=32.76 Aligned_cols=62 Identities=11% Similarity=0.019 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccCh--hH-HHHHHHHHhccCCHHHHHHHHHhC
Q 047120 450 ITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPEL--QH-YGCMVDILGRAGHIEAARNLIEDM 511 (634)
Q Consensus 450 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~-~~~l~~~~~~~g~~~~A~~~~~~~ 511 (634)
..++.+++.|...+.+++|..+..+..--....++. .. +-.++..+.-.+++.+|.+.+..+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 466777777777777777777777663200001111 11 224455666777777777776654
No 292
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=41.64 E-value=1.4e+02 Score=24.08 Aligned_cols=53 Identities=8% Similarity=0.026 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC
Q 047120 431 ELAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484 (634)
Q Consensus 431 ~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 484 (634)
+++.++|..|..+|+--. ..-|......+...|++.+|.++|+.-.+ .+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~-~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ-NQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCccH
Confidence 347788888888877665 34666777777888888888888888776 455553
No 293
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.53 E-value=77 Score=27.45 Aligned_cols=30 Identities=27% Similarity=0.291 Sum_probs=14.1
Q ss_pred CchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 551 SSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 551 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
+..|...+..+...|++++|.++|+.-.+.
T Consensus 150 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 150 SIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 334444444444445555555444444443
No 294
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=39.02 E-value=1.1e+02 Score=33.69 Aligned_cols=28 Identities=4% Similarity=-0.250 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047120 519 IWRTLLSACRNYENLNVGEPVAKHLIGM 546 (634)
Q Consensus 519 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 546 (634)
.|..++..+.+.+.++-+.++.+.+++.
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 4556666666777777777777777754
No 295
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=38.42 E-value=2.1e+02 Score=25.22 Aligned_cols=52 Identities=12% Similarity=0.043 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCChh---HHHHHHHHHHhCCChHHHHHHHhh
Q 047120 159 CLISLYVRCGYLEFARQLFDKMGIRDSV---SYNSMIDGYVKSGNIESARELFDS 210 (634)
Q Consensus 159 ~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~ 210 (634)
..+...++.|+++....+++.-...+.. .-.+.+...+..|+.+-+.-+++.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 4455556777777777777654332111 111233444455665555444443
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.39 E-value=99 Score=27.13 Aligned_cols=88 Identities=10% Similarity=-0.001 Sum_probs=45.0
Q ss_pred HHHHHHHcCCCcchHHHHHHHHHHC--CCCC----CcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 047120 89 AIIKTYSHGLDPKEALVMFCLMLDN--GVSV----DKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLIS 162 (634)
Q Consensus 89 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 162 (634)
--+..+....++++|++++++..+. ++++ +.......++.-.....-.-+..+.+.+ .. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 3466777788999999988876542 2222 1122222333222222222233333333 22 334445555566
Q ss_pred HHHhcCCHHHHHHHHhh
Q 047120 163 LYVRCGYLEFARQLFDK 179 (634)
Q Consensus 163 ~~~~~g~~~~A~~~~~~ 179 (634)
.+.+.|+-++|.++|-+
T Consensus 100 ~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHH
Confidence 66677777777766643
No 297
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=35.64 E-value=98 Score=28.53 Aligned_cols=60 Identities=15% Similarity=0.298 Sum_probs=42.2
Q ss_pred HHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120 508 IEDMPMEPNDV--IWRTLLSACRNYENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 508 ~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
|-..++.|... +....+....+.+++..|-.+.+++++++|... ..++|.+++....+.+
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 33335666543 667778888999999999999999999987521 2345777776665543
No 298
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=35.34 E-value=1.8e+02 Score=23.70 Aligned_cols=52 Identities=12% Similarity=0.081 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCcccC
Q 047120 432 LAFDLLMEMERLSIEPD-DITFTGLLNACAHAGLVKEGLLCFELMRRIHKLEPE 484 (634)
Q Consensus 432 ~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 484 (634)
.+.++|..|..+|+--. ..-|......+...|++.+|.++|+.-.. .+-.|-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~-~~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ-QKAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCcH
Confidence 36667788877777655 33566666677777888888888877776 455554
No 299
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=35.34 E-value=2.1e+02 Score=24.32 Aligned_cols=16 Identities=19% Similarity=0.069 Sum_probs=7.9
Q ss_pred HHhcCCHHHHHHHHhh
Q 047120 164 YVRCGYLEFARQLFDK 179 (634)
Q Consensus 164 ~~~~g~~~~A~~~~~~ 179 (634)
.+..|+.+-+..+++.
T Consensus 113 A~~~~~~~~~~~Ll~~ 128 (231)
T 3aji_A 113 AASKNRHEIAVMLLEG 128 (231)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHc
Confidence 3445555555555443
No 300
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=35.30 E-value=79 Score=31.57 Aligned_cols=44 Identities=16% Similarity=0.093 Sum_probs=22.4
Q ss_pred cCChhHHHHHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHH
Q 047120 530 YENLNVGEPVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRV 573 (634)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 573 (634)
...++.|...|.++....|.+...|+.|+.+....|+.-+|.-+
T Consensus 165 ~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~ 208 (497)
T 1ya0_A 165 RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFY 208 (497)
T ss_dssp TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHH
Confidence 33445555555555555555555555555555554444444333
No 301
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=35.24 E-value=4e+02 Score=29.00 Aligned_cols=91 Identities=8% Similarity=-0.097 Sum_probs=41.3
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHhcccc----CCCCCcccHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHH
Q 047120 51 KLVASFSSSPCTPLTEFARYIFFKYHAF----REKKDPFLWNAIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVL 126 (634)
Q Consensus 51 ~li~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 126 (634)
.++...|+.|..+-+++|.+.|+..... .++||. -+.+...-.+.|+.+.-..+++..... .+..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHH
Confidence 3455556666544445566666654321 123332 222223333445444444444444442 1222334455
Q ss_pred HHHhccCChHHHHHHHHHHH
Q 047120 127 KACSRLGLIEEGLQIHGLLR 146 (634)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~ 146 (634)
.+++...+.....++++..+
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTT
T ss_pred HHhCCCCCHHHHHHHHHHHh
Confidence 55555555555555554443
No 302
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=34.84 E-value=2.1e+02 Score=24.37 Aligned_cols=182 Identities=13% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHH--HHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHH--HHHHHH
Q 047120 89 AIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSAS--LVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQN--CLISLY 164 (634)
Q Consensus 89 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~ 164 (634)
+.+...++.|+.+....+++.+.+.|..++..... +.+...+..|+.+ +.+.+.+.|..++..... +.+...
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHH
Q ss_pred HhcCCHHHHHHHHhh------CCCCChhHHHHHHHHHHhCCChHHHHHHHhhCccC-CCChhHHHHHHHHHHhcCCcHHH
Q 047120 165 VRCGYLEFARQLFDK------MGIRDSVSYNSMIDGYVKSGNIESARELFDSMPIR-ERNLISWNSVLNGYAQLKSGLQF 237 (634)
Q Consensus 165 ~~~g~~~~A~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~p~~~~~~~ll~~~~~~~~~~~~ 237 (634)
+..|+.+-+..+++. -.......-.+.+...+..|+.+-...+++.-... ..+...-...+...+..+. .+.
T Consensus 87 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~-~~~ 165 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS-LSM 165 (241)
T ss_dssp HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC-HHH
T ss_pred HHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC-HHH
Q ss_pred HHHHHhhCCCCCchHHH--HHHHHHHhcCChHHHHHHHhh
Q 047120 238 AWQIFEKMPERDLISWN--SMLHGCVKCGKMDDAQALFDK 275 (634)
Q Consensus 238 a~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~ 275 (634)
+..+++....++..... +.++..+..|+.+-+..+++.
T Consensus 166 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 205 (241)
T 1k1a_A 166 VQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS 205 (241)
T ss_dssp HHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc
No 303
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.16 E-value=1.3e+02 Score=23.30 Aligned_cols=58 Identities=12% Similarity=0.158 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCChHHHHHHhhhCCCCCh---hhHHHHHHHHHHcCC--chHHHHHHHHHHhc
Q 047120 284 WANMIDGYAKLGRVDIARRLFDEMPKRDV---VACNAMMGGYVRNGY--SMKALEIFDNMQCE 341 (634)
Q Consensus 284 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~ 341 (634)
...++.-|...|+.++|.+.++++..|.- .+...+..++-+.++ .+.+..++..+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~ 72 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKS 72 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC
Confidence 34566677777777777777777765421 223333334443322 34566666666655
No 304
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.10 E-value=1.7e+02 Score=22.66 Aligned_cols=62 Identities=21% Similarity=0.204 Sum_probs=36.7
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhccCCCh---hHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 047120 387 VALIDMYSKCGSIENAIKVFEQIEDGSV---DHWNAMINGLAIHGL--GELAFDLLMEMERLSIEPD 448 (634)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~ 448 (634)
..++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4566667777888888888887765422 233334444444332 3556677777776665443
No 305
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.65 E-value=81 Score=31.48 Aligned_cols=62 Identities=11% Similarity=0.063 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------CchHHHHHHHHhcCCCchHHHHHHHHHHhC
Q 047120 517 DVIWRTLLSACRNYENLNVGEPVAKHLIGMDSSN-------SSSYVLLSNMFAGLGMWNDARRVRSMMKER 580 (634)
Q Consensus 517 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (634)
...++.++..|...+.++.|..+..+.. .|.+ ...++.+|.++.-.++|.+|.+.+..+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3466777777777778888887777764 3322 114556678888888888888888776443
No 306
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.50 E-value=1.1e+02 Score=21.11 Aligned_cols=58 Identities=10% Similarity=0.025 Sum_probs=27.7
Q ss_pred HHHCCCCCCcchHHHHHHHHhccC-ChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 047120 110 MLDNGVSVDKFSASLVLKACSRLG-LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCG 168 (634)
Q Consensus 110 m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 168 (634)
|.+.|+.++..- ..++..+...+ ..-.+.++++.+.+.+...+..+....+..+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 445555554432 33444444433 34455566666655544444444444444444444
No 307
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=31.56 E-value=4.1e+02 Score=26.61 Aligned_cols=66 Identities=6% Similarity=-0.042 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHH--------HHHHHHhccCCCCCchHHHHHHHHhcCCCchHHHHHHHHHHhCC
Q 047120 513 MEPNDVIWRTLLSACRNYENLNVGE--------PVAKHLIGMDSSNSSSYVLLSNMFAGLGMWNDARRVRSMMKERN 581 (634)
Q Consensus 513 ~~p~~~~~~~l~~~~~~~g~~~~a~--------~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (634)
..+|......|-.-+...|-.++-. .++++ ..|.+......|-..|.+.|++-+|-+++..+...+
T Consensus 174 ~s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r---~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 174 KYNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLME---KAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp SSCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHH---TCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred cCChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHh---cCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 3566666666777777776554432 22222 335556667777788889999999999998887764
No 308
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.36 E-value=1.9e+02 Score=25.38 Aligned_cols=22 Identities=9% Similarity=-0.032 Sum_probs=15.3
Q ss_pred HHHHHHcCCchHHHHHHHHHHh
Q 047120 319 MGGYVRNGYSMKALEIFDNMQC 340 (634)
Q Consensus 319 ~~~~~~~g~~~~A~~~~~~m~~ 340 (634)
+..+....++++|++++++...
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 5666777777777777776653
No 309
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=30.30 E-value=3.8e+02 Score=25.82 Aligned_cols=26 Identities=19% Similarity=-0.155 Sum_probs=13.2
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHH
Q 047120 122 ASLVLKACSRLGLIEEGLQIHGLLRK 147 (634)
Q Consensus 122 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 147 (634)
-..++.+++...+.....++++....
T Consensus 270 k~~ll~aL~~s~d~~ll~~~L~~~l~ 295 (419)
T 3rjo_A 270 KSQIEFALCRTQNKEKLQWLLDESFK 295 (419)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhC
Confidence 34455555555555555555555444
No 310
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=29.93 E-value=1.9e+02 Score=23.90 Aligned_cols=7 Identities=0% Similarity=-0.372 Sum_probs=3.0
Q ss_pred cCCCcch
Q 047120 96 HGLDPKE 102 (634)
Q Consensus 96 ~~g~~~~ 102 (634)
..|+.+-
T Consensus 81 ~~~~~~~ 87 (201)
T 3hra_A 81 AQGRTEI 87 (201)
T ss_dssp HTTCHHH
T ss_pred HcCCHHH
Confidence 3444433
No 311
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.34 E-value=5.9e+02 Score=27.86 Aligned_cols=127 Identities=11% Similarity=0.085 Sum_probs=73.3
Q ss_pred HHHHHHHcCChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHH
Q 047120 287 MIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDK 366 (634)
Q Consensus 287 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 366 (634)
++..+...|..+-|.++...+.. ++..-..+..+|...|++++|...|++.. .|+..+....... +.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA--~gl~~~~~~~~~~----------~~ 882 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQFAVL----------RE 882 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CTTCSSCCSCGGG----------HH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh--hhcccCcccccch----------hh
Confidence 56667778888888777766665 44444567788899999999999998775 2443321110000 00
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhcc----CCCh----hHHHHHHHHHHHcC
Q 047120 367 GVAIHRYLEKDQFSLNGKHGVALIDMYSKCGSIENAIKVFEQIE----DGSV----DHWNAMINGLAIHG 428 (634)
Q Consensus 367 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~~ 428 (634)
...++... + ........|..++..+.+.+.++.+.++-+... ..|. ..|..+..+.+..|
T Consensus 883 ~~~ll~~~-e-~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 883 FQEIAEKY-H-HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHT-T-TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccCcc-c-ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00011000 0 001122367778888888888888877766543 2233 25667776665544
No 312
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=27.97 E-value=1.5e+02 Score=23.84 Aligned_cols=62 Identities=21% Similarity=0.204 Sum_probs=35.7
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhccCCCh---hHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 047120 387 VALIDMYSKCGSIENAIKVFEQIEDGSV---DHWNAMINGLAIHGL--GELAFDLLMEMERLSIEPD 448 (634)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~ 448 (634)
..++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+...|+-+.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4566667777788888888877765422 233334444443222 3456667777766665443
No 313
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.61 E-value=1.2e+02 Score=24.42 Aligned_cols=58 Identities=12% Similarity=0.158 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCChHHHHHHhhhCCCCCh---hhHHHHHHHHHHcCC--chHHHHHHHHHHhc
Q 047120 284 WANMIDGYAKLGRVDIARRLFDEMPKRDV---VACNAMMGGYVRNGY--SMKALEIFDNMQCE 341 (634)
Q Consensus 284 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~ 341 (634)
...++.-|...|+.++|.+.++++..|.- .+...+..++-+.++ .+.+..++..+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~ 74 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKS 74 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC
Confidence 44566667777777777777777765421 223333334443222 34456666666655
No 314
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.26 E-value=66 Score=23.51 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=25.6
Q ss_pred CChHHHHHHhhhCCCCChhhHHHHHHHHHHcCCchHH
Q 047120 295 GRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKA 331 (634)
Q Consensus 295 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 331 (634)
.+.+.|.++++.++.++..+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 3567777777777777777777777777665655444
No 315
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=26.04 E-value=2.7e+02 Score=23.51 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=6.9
Q ss_pred HHcCChHHHHHHhhh
Q 047120 292 AKLGRVDIARRLFDE 306 (634)
Q Consensus 292 ~~~g~~~~A~~~~~~ 306 (634)
+..|+.+-+.-+++.
T Consensus 180 ~~~~~~~~v~~Ll~~ 194 (231)
T 3aji_A 180 CDEERVEEAKFLVTQ 194 (231)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHC
Confidence 344555444444443
No 316
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.86 E-value=1.7e+02 Score=23.10 Aligned_cols=58 Identities=10% Similarity=0.019 Sum_probs=27.9
Q ss_pred HHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 047120 110 MLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCG 168 (634)
Q Consensus 110 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 168 (634)
|.+.|++++.. =..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 44555554443 22334444444445556666666665554444444333444444444
No 317
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=24.13 E-value=1.3e+02 Score=20.80 Aligned_cols=39 Identities=5% Similarity=0.014 Sum_probs=25.5
Q ss_pred HHHHhccccCCCCCcccHHHHHHHHHcCCCcchHHHHHHHH
Q 047120 70 YIFFKYHAFREKKDPFLWNAIIKTYSHGLDPKEALVMFCLM 110 (634)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 110 (634)
.+|.+++ +.+|++.||+-+....-+..-...+..+.+++
T Consensus 24 ~LL~kIP--nLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 24 QLLQRIP--NIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHTTSS--SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHhhCC--CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4566666 45788888888777665555555666655554
No 318
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.98 E-value=1e+02 Score=25.04 Aligned_cols=63 Identities=10% Similarity=-0.037 Sum_probs=0.0
Q ss_pred hhhhhHHHHHhhcCCCCCCHHHHHHHHHhccccCCCC--CcccHHHHHH------HHHcCCCcchHHHHHHHHHH
Q 047120 46 THLTTKLVASFSSSPCTPLTEFARYIFFKYHAFREKK--DPFLWNAIIK------TYSHGLDPKEALVMFCLMLD 112 (634)
Q Consensus 46 ~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~li~------~~~~~g~~~~A~~~~~~m~~ 112 (634)
...+..-+..|-. |++ .+|-++|+........+ ....|..||+ .+.+.|+...|..++.+...
T Consensus 33 ~~~~~~~i~lFn~-g~y---feaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 33 RRAVVHGVRLYNS-GEF---HESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHHT-TCH---HHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhC-CCc---hHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
No 319
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.72 E-value=1.8e+02 Score=22.68 Aligned_cols=60 Identities=10% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHCCCCCCcchHHHHHHHHhccC-ChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 047120 108 CLMLDNGVSVDKFSASLVLKACSRLG-LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCG 168 (634)
Q Consensus 108 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 168 (634)
+.|.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 7 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 7 SELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 320
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=23.28 E-value=3.4e+02 Score=22.91 Aligned_cols=45 Identities=16% Similarity=0.006 Sum_probs=27.3
Q ss_pred HHHHHHHHHhccCC-Chh-------HHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 047120 399 IENAIKVFEQIEDG-SVD-------HWNAMINGLAIHGLGELAFDLLMEMERL 443 (634)
Q Consensus 399 ~~~A~~~~~~~~~~-~~~-------~~~~li~~~~~~~~~~~A~~~~~~m~~~ 443 (634)
++.|+.+|+.+.+. +.. .-...+..|.+.|.+++|.++|++....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 56777788777632 211 1233445677778888888888776543
No 321
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=23.18 E-value=3.7e+02 Score=23.40 Aligned_cols=52 Identities=8% Similarity=-0.104 Sum_probs=29.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCCCChh---HHHHHHHHHHhcCCHHHHHHHHhhC
Q 047120 125 VLKACSRLGLIEEGLQIHGLLRKVAFGSDLF---LQNCLISLYVRCGYLEFARQLFDKM 180 (634)
Q Consensus 125 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~ 180 (634)
.+...++.|+.+.. +.+++.|..++.. .-.+.+...+..|+.+-+..+++.-
T Consensus 8 ~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 62 (285)
T 1wdy_A 8 LLIKAVQNEDVDLV----QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62 (285)
T ss_dssp HHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHH----HHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 34445566776544 4445556544422 1124455566778888777777653
No 322
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.82 E-value=1.1e+02 Score=22.21 Aligned_cols=38 Identities=18% Similarity=0.150 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHH
Q 047120 397 GSIENAIKVFEQIEDGSVDHWNAMINGLAIHGLGELAF 434 (634)
Q Consensus 397 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 434 (634)
.+.+.|.++++.+...++.+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887666655443
No 323
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.58 E-value=1.4e+02 Score=23.17 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=24.1
Q ss_pred HHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhccC
Q 047120 89 AIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSRLG 133 (634)
Q Consensus 89 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 133 (634)
.++..+...+.+-.|.++++.+.+.+...+..|.-..|+.+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344455455556666666666666554444445444444444444
No 324
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.54 E-value=1.9e+02 Score=23.00 Aligned_cols=60 Identities=12% Similarity=0.041 Sum_probs=31.1
Q ss_pred HHHHCCCCCCcchHHHHHHHHhccC-ChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 047120 109 LMLDNGVSVDKFSASLVLKACSRLG-LIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCGY 169 (634)
Q Consensus 109 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 169 (634)
.|.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 3455565554432 23444444444 455666777766666555555444444455555543
No 325
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=22.44 E-value=2e+02 Score=22.75 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=7.5
Q ss_pred HHHHHHHHCCCCCCc
Q 047120 105 VMFCLMLDNGVSVDK 119 (634)
Q Consensus 105 ~~~~~m~~~g~~p~~ 119 (634)
++++.+.+.|..++.
T Consensus 56 ~~v~~Ll~~g~~~~~ 70 (165)
T 3twr_A 56 SVVEYLLQHGADVHA 70 (165)
T ss_dssp HHHHHHHHTTCCTTC
T ss_pred HHHHHHHhcCCCCCc
Confidence 444555555555443
No 326
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.18 E-value=1.7e+02 Score=23.77 Aligned_cols=68 Identities=7% Similarity=0.031 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCchhHHHHHHHHhHhcC
Q 047120 329 MKALEIFDNMQCELYLHPDDASLVIVLSAIAQLGHIDKGVAIHRYLEKD--QFSLNGKHGVALIDMYSKCG 397 (634)
Q Consensus 329 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 397 (634)
+.+++-+.+..+..|++++..- ..++..+...+..-.|.++++.+.+. +...+..|...-++.+...|
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 4455555555544477775533 34455556666667777888877776 55555555555555555544
No 327
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.87 E-value=1.3e+02 Score=23.69 Aligned_cols=43 Identities=12% Similarity=0.085 Sum_probs=20.4
Q ss_pred HHHHHHHcCCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 047120 89 AIIKTYSHGLDPKEALVMFCLMLDNGVSVDKFSASLVLKACSR 131 (634)
Q Consensus 89 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 131 (634)
.++..+...+++-.|.++++.+.+.+...+..|--..|+.+..
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e 60 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLAD 60 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 3444444444555555555555554433444443333443333
No 328
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=21.80 E-value=79 Score=20.58 Aligned_cols=30 Identities=23% Similarity=0.183 Sum_probs=19.4
Q ss_pred cchHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 047120 100 PKEALVMFCLMLDNGVSVDKFSASLVLKAC 129 (634)
Q Consensus 100 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 129 (634)
.++|...|.+|++..-.++..||...++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 356777777776654445556777777766
No 329
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.57 E-value=2e+02 Score=22.88 Aligned_cols=67 Identities=12% Similarity=0.028 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 047120 101 KEALVMFCLMLDNGVSVDKFSASLVLKACSRLGLIEEGLQIHGLLRKVAFGSDLFLQNCLISLYVRCG 168 (634)
Q Consensus 101 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 168 (634)
.....+-+.|.+.|++++.. =..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 9 ~~~~~~~~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 9 SILERLRMSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
No 330
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=21.08 E-value=4.4e+02 Score=23.40 Aligned_cols=14 Identities=7% Similarity=-0.043 Sum_probs=5.6
Q ss_pred HhcCCHHHHHHHHh
Q 047120 165 VRCGYLEFARQLFD 178 (634)
Q Consensus 165 ~~~g~~~~A~~~~~ 178 (634)
+..|+.+-+..+++
T Consensus 70 ~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 70 ATLEDTKIVKILLF 83 (285)
T ss_dssp TTSSSCHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 33444444433333
No 331
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=20.79 E-value=5.6e+02 Score=24.51 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=21.3
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHH
Q 047120 553 SYVLLSNMFAGLGMWNDARRVRSMM 577 (634)
Q Consensus 553 ~~~~l~~~~~~~g~~~~A~~~~~~~ 577 (634)
.+..++.+++..|+.+.|.++++.+
T Consensus 338 ~~~eYA~lLA~qG~l~~A~~yL~~l 362 (399)
T 2pm7_A 338 KFLEFINLTTSTGNFELATEFLNSL 362 (399)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 4557788999999999999999865
No 332
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.40 E-value=2.3e+02 Score=22.34 Aligned_cols=13 Identities=0% Similarity=-0.100 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhHH
Q 047120 465 VKEGLLCFELMRR 477 (634)
Q Consensus 465 ~~~a~~~~~~~~~ 477 (634)
.-.|.++++.+.+
T Consensus 37 ~~sa~ei~~~l~~ 49 (145)
T 2fe3_A 37 HPTADDIYKALEG 49 (145)
T ss_dssp CCCHHHHHHHHGG
T ss_pred CCCHHHHHHHHHH
Confidence 3344555555544
No 333
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.38 E-value=2.8e+02 Score=23.73 Aligned_cols=68 Identities=15% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHhcCcccCh------hHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC
Q 047120 465 VKEGLLCFELMRRIHKLEPEL------QHYGCMVDILGRAGHIEAARNLIEDM-PMEPNDVIWRTLLSACRNYEN 532 (634)
Q Consensus 465 ~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~ 532 (634)
++.|+.+|+.+.+...+.... ..-...+-.|.+.|.+++|.+++++. +-.|+..-...-+....+..|
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Done!