BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047123
(579 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 5/187 (2%)
Query: 204 GNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPL 263
G V L+ LL S ++++A AL+ I S DE+ K + + GG+ L+++L + +
Sbjct: 44 GGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEV 102
Query: 264 KEKAAIGVEAITTDPENAW-AISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVED-- 320
+++AA + I + P+ A AI GGV VL++ S + Q A A+ NIA+ D
Sbjct: 103 QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162
Query: 321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLI 380
IK A+ + G V VLV+ LTS+ + Q+ AA +A +A+ I+ G++ L L+
Sbjct: 163 IK-AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLL 221
Query: 381 QDSTSSI 387
+ S +
Sbjct: 222 TSTDSEV 228
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
Query: 252 LLRILETGSMPLKEKAAIGVEAITTDPENAW-AISAYGGVSVLIEAFRSGTALTQSHAVG 310
L+++L + +++AA + I + P +A AI GGV VL++ S + Q A
Sbjct: 7 LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 311 AIRNIAAVED--IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLII 368
A+ NIA+ D IK A+ + G V VLV+ LTS+ + Q+ AA +A +A+ + I+
Sbjct: 67 ALANIASGPDEAIK-AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 125
Query: 369 QERGLQRLMHLIQDSTSSI 387
G++ L+ L+ + S +
Sbjct: 126 DAGGVEVLVKLLTSTDSEV 144
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 89/179 (49%), Gaps = 5/179 (2%)
Query: 204 GNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPL 263
G + L+ LL ++ ++E A+ ALS I S +E + V + G L L+++L + + +
Sbjct: 54 GALPALVQLLSSPNEQILQE-ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 112
Query: 264 KEKAAIGVEAITTD-PENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA--VED 320
++A + I + E A+ G + L++ S A+ A+ NIA+ E
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172
Query: 321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHL 379
I+A + + GA+P LVQ L+S + + A ++ +A+ G + + + L++L L
Sbjct: 173 IQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 230
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 4/163 (2%)
Query: 229 LSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PENAWAISAY 287
S I+S +E + V + G L L+++L + + + ++A + I + E A+
Sbjct: 36 FSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 95
Query: 288 GGVSVLIEAFRSGTALTQSHAVGAIRNIAA--VEDIKAALAEEGAVPVLVQSLTSSSNLA 345
G + L++ S A+ A+ NIA+ E I+A + + GA+P LVQ L+S +
Sbjct: 96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQLLSSPNEQI 154
Query: 346 QENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIV 388
+ A ++ +A+ G +I L L+ L+ I+
Sbjct: 155 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 197
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 209 LISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAA 268
L+SLL + + SI+++A +S I + N + + V G +GPL+ +L+T +K++AA
Sbjct: 333 LLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAA 392
Query: 269 IGVEAITT 276
+ T+
Sbjct: 393 WAISNATS 400
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 305 QSHAVGAIRNIAA--VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEY 362
Q A A+ NIA+ E+ K + + GAVP+ V+ L SSS+ +E A + +A
Sbjct: 135 QFEAAWALTNIASGTSENTKVVI-DHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK 193
Query: 363 FRLLIIQERGLQRLMHLIQDST 384
R L++ L L+ + + T
Sbjct: 194 CRDLVLANGALLPLLAQLNEHT 215
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 199 VVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLL 253
VV G V + LL +REQAV AL + + + R +V G L PLL
Sbjct: 155 VVIDHGAVPIFVKLLG-SSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLL 208
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 209 LISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAA 268
L+SLL + + SI+++A +S I + N + + V G +GPL+ +L+T +K++AA
Sbjct: 295 LLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAA 354
Query: 269 IGVEAITT 276
+ T+
Sbjct: 355 WAISNATS 362
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 305 QSHAVGAIRNIAA--VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEY 362
Q A A+ NIA+ E+ K + + GAVP+ V+ L SSS+ +E A + +A
Sbjct: 97 QFEAAWALTNIASGTSENTKVVI-DHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK 155
Query: 363 FRLLIIQERGLQRLMHLIQDST 384
R L++ L L+ + + T
Sbjct: 156 CRDLVLANGALLPLLAQLNEHT 177
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 199 VVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLL 253
VV G V + LL +REQAV AL + + + R +V G L PLL
Sbjct: 117 VVIDHGAVPIFVKLLG-SSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLL 170
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 3/154 (1%)
Query: 228 ALSIIVSANDESRKIVFEEGGLGPLLRILETGSM-PLKEKAAIGVEAITTDPENAWAISA 286
L ++ N ES+ I+ GG L++I+ S L + ++ ++ P N AI
Sbjct: 168 CLQLLAYGNQESKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSVCPSNKPAIVE 227
Query: 287 YGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQ 346
GG+ L + S + + + +RN++ V + L E + +LV L+
Sbjct: 228 AGGMQALGKHLTSNSPRLVQNCLWTLRNLSDVATKQEGL--ESVLKILVNQLSVDDVNVL 285
Query: 347 ENAADCIATLAASGEYFRLLIIQERGLQRLMHLI 380
A ++ L + + L+ Q G++ L+H I
Sbjct: 286 TCATGTLSNLTCNNSKNKTLVTQNSGVEALIHAI 319
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Query: 229 LSIIVSANDESRKIVFEEGGLGPLLR-ILETGSMP-LKEKAAIGVEAITT-DPENAWA-- 283
LS + N +++ +V + G+ L+ IL G + E A + +T+ PE A
Sbjct: 292 LSNLTCNNSKNKTLVTQNSGVEALIHAILRAGDKDDITEPAVCALRHLTSRHPEAEMAQN 351
Query: 284 -ISAYGGVSVLIEAFRSGTALTQSHA-VGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSS 341
+ G+ +++ A +G IRN+A A L E +P LVQ L +
Sbjct: 352 SVRLNYGIPAIVKLLNQPNQWPLVKATIGLIRNLALCPANHAPLQEAAVIPRLVQLLVKA 411
Query: 342 SNLAQENAA 350
AQ + A
Sbjct: 412 HQDAQRHVA 420
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 8/143 (5%)
Query: 203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLR-ILETGSM 261
EG +G L+ LL + + A + LS + N +++ +V + GG+ L+R +L G
Sbjct: 250 EGLLGTLVQLLGSDDINVVTCAAGI-LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 308
Query: 262 P-LKEKAAIGVEAITTDPENAW----AISAYGGVSVLIEAFRSGTALTQSHA-VGAIRNI 315
+ E A + +T+ + A A+ + G+ V+++ + A VG IRN+
Sbjct: 309 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 368
Query: 316 AAVEDIKAALAEEGAVPVLVQSL 338
A A L E+GA+P LVQ L
Sbjct: 369 ALCPANHAPLREQGAIPRLVQLL 391
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 8/143 (5%)
Query: 203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLR-ILETGSM 261
EG +G L+ LL + + A + LS + N +++ +V + GG+ L+R +L G
Sbjct: 263 EGLLGTLVQLLGSDDINVVTCAAGI-LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 321
Query: 262 P-LKEKAAIGVEAITTDPENAW----AISAYGGVSVLIEAFRSGTALTQSHA-VGAIRNI 315
+ E A + +T+ + A A+ + G+ V+++ + A VG IRN+
Sbjct: 322 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 381
Query: 316 AAVEDIKAALAEEGAVPVLVQSL 338
A A L E+GA+P LVQ L
Sbjct: 382 ALCPANHAPLREQGAIPRLVQLL 404
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 8/143 (5%)
Query: 203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLR-ILETGSM 261
EG +G L+ LL + + A + LS + N +++ +V + GG+ L+R +L G
Sbjct: 250 EGLLGTLVQLLGSDDINVVTCAAGI-LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 308
Query: 262 P-LKEKAAIGVEAITTDPENAW----AISAYGGVSVLIEAFRSGTALTQSHA-VGAIRNI 315
+ E A + +T+ + A A+ + G+ V+++ + A VG IRN+
Sbjct: 309 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 368
Query: 316 AAVEDIKAALAEEGAVPVLVQSL 338
A A L E+GA+P LVQ L
Sbjct: 369 ALCPANHAPLREQGAIPRLVQLL 391
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 8/143 (5%)
Query: 203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLR-ILETGSM 261
EG +G L+ LL + + A + LS + N +++ +V + GG+ L+R +L G
Sbjct: 263 EGLLGTLVQLLGSDDINVVTCAAGI-LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 321
Query: 262 P-LKEKAAIGVEAITTDPENAW----AISAYGGVSVLIEAFRSGTALTQSHA-VGAIRNI 315
+ E A + +T+ + A A+ + G+ V+++ + A VG IRN+
Sbjct: 322 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 381
Query: 316 AAVEDIKAALAEEGAVPVLVQSL 338
A A L E+GA+P LVQ L
Sbjct: 382 ALCPANHAPLREQGAIPRLVQLL 404
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 8/143 (5%)
Query: 203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLR-ILETGSM 261
EG +G L+ LL + + A + LS + N +++ +V + GG+ L+R +L G
Sbjct: 252 EGLLGTLVQLLGSDDINVVTCAAGI-LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 310
Query: 262 P-LKEKAAIGVEAITTDPENAW----AISAYGGVSVLIEAFRSGTALTQSHA-VGAIRNI 315
+ E A + +T+ + A A+ + G+ V+++ + A VG IRN+
Sbjct: 311 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 370
Query: 316 AAVEDIKAALAEEGAVPVLVQSL 338
A A L E+GA+P LVQ L
Sbjct: 371 ALCPANHAPLREQGAIPRLVQLL 393
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 8/143 (5%)
Query: 203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLR-ILETGSM 261
EG +G L+ LL + + A + LS + N +++ +V + GG+ L+R +L G
Sbjct: 398 EGLLGTLVQLLGSDDINVVTCAAGI-LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 456
Query: 262 -PLKEKAAIGVEAITTDPENAW----AISAYGGVSVLIEAFRSGTALTQSHA-VGAIRNI 315
+ E A + +T+ ++A A+ + G+ V+++ + A VG IRN+
Sbjct: 457 EDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 516
Query: 316 AAVEDIKAALAEEGAVPVLVQSL 338
A A L E+GA+P LVQ L
Sbjct: 517 ALCPANHAPLREQGAIPRLVQLL 539
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 8/143 (5%)
Query: 203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLR-ILETGSM 261
EG +G L+ LL + + A + LS + N +++ +V + GG+ L+R +L G
Sbjct: 267 EGLLGTLVQLLGSDDINVVTCAAGI-LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 325
Query: 262 P-LKEKAAIGVEAITTDPENAW----AISAYGGVSVLIEAFRSGTALTQSHA-VGAIRNI 315
+ E A + +T+ + A A+ + G+ V+++ + A VG IRN+
Sbjct: 326 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 385
Query: 316 AAVEDIKAALAEEGAVPVLVQSL 338
A A L E+GA+P LVQ L
Sbjct: 386 ALCPANHAPLREQGAIPRLVQLL 408
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 8/143 (5%)
Query: 203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLR-ILETGSM 261
EG +G L+ LL + + A + LS + N +++ +V + GG+ L+R +L G
Sbjct: 254 EGLLGTLVQLLGSDDINVVTCAAGI-LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 312
Query: 262 P-LKEKAAIGVEAITTDPENAW----AISAYGGVSVLIEAFRSGTALTQSHA-VGAIRNI 315
+ E A + +T+ + A A+ + G+ V+++ + A VG IRN+
Sbjct: 313 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 372
Query: 316 AAVEDIKAALAEEGAVPVLVQSL 338
A A L E+GA+P LVQ L
Sbjct: 373 ALCPANHAPLREQGAIPRLVQLL 395
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 8/143 (5%)
Query: 203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLR-ILETGSM 261
EG +G L+ LL + + A + LS + N +++ +V + GG+ L+R +L G
Sbjct: 266 EGLLGTLVQLLGSDDINVVTCAAGI-LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 324
Query: 262 -PLKEKAAIGVEAITTDPENAW----AISAYGGVSVLIEAFRSGTALTQSHA-VGAIRNI 315
+ E A + +T+ + A A+ + G+ V+++ + A VG IRN+
Sbjct: 325 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 384
Query: 316 AAVEDIKAALAEEGAVPVLVQSL 338
A A L E+GA+P LVQ L
Sbjct: 385 ALCPANHAPLREQGAIPRLVQLL 407
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 8/143 (5%)
Query: 203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLR-ILETGSM 261
EG +G L+ LL + + A + LS + N +++ +V + GG+ L+R +L G
Sbjct: 268 EGLLGTLVQLLGSDDINVVTCAAGI-LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 326
Query: 262 -PLKEKAAIGVEAITTDPENAW----AISAYGGVSVLIEAFRSGTALTQSHA-VGAIRNI 315
+ E A + +T+ + A A+ + G+ V+++ + A VG IRN+
Sbjct: 327 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 386
Query: 316 AAVEDIKAALAEEGAVPVLVQSL 338
A A L E+GA+P LVQ L
Sbjct: 387 ALCPANHAPLREQGAIPRLVQLL 409
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 8/143 (5%)
Query: 203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLR-ILETGSM 261
EG +G L+ LL + + A + LS + N +++ +V + GG+ L+R +L G
Sbjct: 265 EGLLGTLVQLLGSDDINVVTCAAGI-LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 323
Query: 262 P-LKEKAAIGVEAITTDPENAW----AISAYGGVSVLIEAFRSGTALTQSHA-VGAIRNI 315
+ E A + +T+ + A A+ + G+ V+++ + A VG IRN+
Sbjct: 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 383
Query: 316 AAVEDIKAALAEEGAVPVLVQSL 338
A A L E+GA+P LVQ L
Sbjct: 384 ALCPANHAPLREQGAIPRLVQLL 406
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 8/143 (5%)
Query: 203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLR-ILETGSM 261
EG +G L+ LL + + A + LS + N +++ +V + GG+ L+R +L G
Sbjct: 267 EGLLGTLVQLLGSDDINVVTCAAGI-LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 325
Query: 262 P-LKEKAAIGVEAITTDPENAW----AISAYGGVSVLIEAFRSGTALTQSHA-VGAIRNI 315
+ E A + +T+ + A A+ + G+ V+++ + A VG IRN+
Sbjct: 326 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 385
Query: 316 AAVEDIKAALAEEGAVPVLVQSL 338
A A L E+GA+P LVQ L
Sbjct: 386 ALCPANHAPLREQGAIPRLVQLL 408
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 8/143 (5%)
Query: 203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLR-ILETGSM 261
EG +G L+ LL + + A + LS + N +++ +V + GG+ L+R +L G
Sbjct: 269 EGLLGTLVQLLGSDDINVVTCAAGI-LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 327
Query: 262 -PLKEKAAIGVEAITTDPENAW----AISAYGGVSVLIEAFRSGTALTQSHA-VGAIRNI 315
+ E A + +T+ + A A+ + G+ V+++ + A VG IRN+
Sbjct: 328 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 387
Query: 316 AAVEDIKAALAEEGAVPVLVQSL 338
A A L E+GA+P LVQ L
Sbjct: 388 ALCPANHAPLREQGAIPRLVQLL 410
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 8/151 (5%)
Query: 203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLR-ILETGSM 261
EG +G L+ LL + + A + LS + N +++ +V + GG+ L+R +L G
Sbjct: 262 EGLLGTLVQLLGSDDINVVTCAAGI-LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 320
Query: 262 -PLKEKAAIGVEAITTDPENAW----AISAYGGVSVLIEAFRSGTALTQSHA-VGAIRNI 315
+ E A + +T+ + A A+ + G+ V+++ + A VG IRN+
Sbjct: 321 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 380
Query: 316 AAVEDIKAALAEEGAVPVLVQSLTSSSNLAQ 346
A A L E+GA+P LVQ L + Q
Sbjct: 381 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQ 411
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 65/154 (42%), Gaps = 3/154 (1%)
Query: 228 ALSIIVSANDESRKIVFEEGGLGPLLRILETGSM-PLKEKAAIGVEAITTDPENAWAISA 286
L I+ N ES+ I+ GG L+ I+ T + L + ++ ++ N AI
Sbjct: 163 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE 222
Query: 287 YGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQ 346
GG+ L + + + +RN++ + + EG + LVQ L S
Sbjct: 223 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EGLLGTLVQLLGSDDINVV 280
Query: 347 ENAADCIATLAASGEYFRLLIIQERGLQRLMHLI 380
AA ++ L + ++++ Q G++ L+ +
Sbjct: 281 TCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 314
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 9/165 (5%)
Query: 218 QSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD 277
QS++R+ LS I S +E + V + G L L+++L + + + ++A + I +
Sbjct: 30 QSALRK-----LSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84
Query: 278 -PENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA--VEDIKAALAEEGAVPVL 334
E A+ G + L++ S A+ A+ NIA+ E I+A + + GA+P L
Sbjct: 85 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-DAGALPAL 143
Query: 335 VQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHL 379
VQ L+S + + A ++ +A+ G + + + L++L L
Sbjct: 144 VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 8/143 (5%)
Query: 203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLR-ILETGSM 261
EG +G L+ LL + + A + LS + N +++ V + GG+ L+R +L G
Sbjct: 207 EGLLGTLVQLLGSDDINVVTCAAGI-LSNLTCNNYKNKXXVCQVGGIEALVRTVLRAGDR 265
Query: 262 P-LKEKAAIGVEAITTDPENAW----AISAYGGVSVLIEAFRSGTALTQSHA-VGAIRNI 315
+ E A + +T+ + A A+ + G+ V+++ + A VG IRN+
Sbjct: 266 EDITEPAICALRHLTSRHQEAEXAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 325
Query: 316 AAVEDIKAALAEEGAVPVLVQSL 338
A A L E+GA+P LVQ L
Sbjct: 326 ALCPANHAPLREQGAIPRLVQLL 348
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 86/177 (48%), Gaps = 10/177 (5%)
Query: 218 QSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD 277
QS++R+ LS I S +E + V + G L L+++L + + + ++A + I +
Sbjct: 30 QSALRK-----LSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84
Query: 278 -PENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA--VEDIKAALAEEGAVPVL 334
E A+ G + L++ S A+ A+ NIA+ E I+A + + GA+P L
Sbjct: 85 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-DAGALPAL 143
Query: 335 VQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVE 391
VQ L+S + + A ++ +A+ G + ++E G + + +Q S + + E
Sbjct: 144 VQLLSSPNEQILQEALWALSNIASGGNEQK-QAVKEAGAEPALEQLQSSPNEKIQKE 199
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 200 VAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRIL 256
V G + ISLL H + I EQAV AL I A R +V + G + PLL +L
Sbjct: 158 VVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALL 213
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 305 QSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF 363
Q + A+ NIA+ + A+ + GA+P + L S E A + +A +G F
Sbjct: 137 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF 196
Query: 364 RLLIIQERGLQRLMHLI 380
R L+I+ + L+ L+
Sbjct: 197 RDLVIKHGAIDPLLALL 213
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 4/154 (2%)
Query: 229 LSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PENAWAISAY 287
S I+S +E + V + G L L+++L + + + ++A + I + E A+
Sbjct: 36 FSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 95
Query: 288 GGVSVLIEAFRSGTALTQSHAVGAIRNIAA--VEDIKAALAEEGAVPVLVQSLTSSSNLA 345
G + L++ S A+ A+ NIA+ E I+A + + GA+P LVQ L+S +
Sbjct: 96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQLLSSPNEQI 154
Query: 346 QENAADCIATLAASGEYFRLLIIQERGLQRLMHL 379
+ A ++ +A+ G + + + L++L L
Sbjct: 155 LQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 298 RSGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATL 356
R+ + Q + A+ NIA+ + A+ + GA+P + L S E A + +
Sbjct: 62 RTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 121
Query: 357 AASGEYFRLLIIQERGLQRLMHLI 380
A G FR L+I+ + L+ L+
Sbjct: 122 AGDGSVFRDLVIKYGAVDPLLALL 145
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 200 VAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETG 259
V G + ISLL H + I EQAV AL I R +V + G + PLL +L
Sbjct: 90 VVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVP 148
Query: 260 SM 261
M
Sbjct: 149 DM 150
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 305 QSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF 363
Q + A+ NIA+ + A+ + GA+P + L S E A + +A G F
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 364 RLLIIQERGLQRLMHLI 380
R L+I+ + L+ L+
Sbjct: 178 RDLVIKHGAIDPLLALL 194
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 200 VAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRIL 256
V G + ISLL H + I EQAV AL I R +V + G + PLL +L
Sbjct: 139 VVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 194
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 305 QSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF 363
Q + A+ NIA+ + A+ + GA+P + L S E A + +A G F
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 364 RLLIIQERGLQRLMHLI 380
R L+I+ + L+ L+
Sbjct: 178 RDLVIKHGAIDPLLALL 194
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 200 VAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRIL 256
V G + ISLL H + I EQAV AL I R +V + G + PLL +L
Sbjct: 139 VVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 194
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 305 QSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF 363
Q + A+ NIA+ + A+ + GA+P + L S E A + +A G F
Sbjct: 104 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 163
Query: 364 RLLIIQERGLQRLMHLI 380
R L+I+ + L+ L+
Sbjct: 164 RDLVIKHGAIDPLLALL 180
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 200 VAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRIL 256
V G + ISLL H + I EQAV AL I R +V + G + PLL +L
Sbjct: 125 VVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 180
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 200 VAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRIL 256
V G + ISLL H + I EQAV AL I R +V + G + PLL +L
Sbjct: 123 VVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 178
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 305 QSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF 363
Q + A+ NIA+ + A+ + GA+P + L S E A + +A G F
Sbjct: 102 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 161
Query: 364 RLLIIQERGLQRLMHLI 380
R L+I+ + L+ L+
Sbjct: 162 RDLVIKHGAIDPLLALL 178
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 305 QSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF 363
Q + A+ NIA+ + A+ + GA+P + L S E A + +A G F
Sbjct: 74 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 364 RLLIIQERGLQRLMHLI 380
R L+I+ + L+ L+
Sbjct: 134 RDLVIKHGAIDPLLALL 150
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 200 VAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRIL 256
V G + ISLL H + I EQAV AL I R +V + G + PLL +L
Sbjct: 95 VVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 150
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 200 VAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRIL 256
V G + ISLL H + I EQAV AL I R +V + G + PLL +L
Sbjct: 88 VVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 143
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 305 QSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF 363
Q + A+ NIA+ + A+ + GA+P + L S E A + +A G F
Sbjct: 67 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 364 RLLIIQERGLQRLMHLI 380
R L+I+ + L+ L+
Sbjct: 127 RDLVIKHGAIDPLLALL 143
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 305 QSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF 363
Q + A+ NIA+ + A+ + GA+P + L S E A + +A G F
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 364 RLLIIQERGLQRLMHLI 380
R L+I+ + L+ L+
Sbjct: 178 RDLVIKHGAIDPLLALL 194
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 200 VAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRIL 256
V G + ISLL H + I EQAV AL I R +V + G + PLL +L
Sbjct: 139 VVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 194
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 200 VAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRIL 256
V G + ISLL H + I EQAV AL I R +V + G + PLL +L
Sbjct: 88 VVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 143
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 305 QSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF 363
Q + A+ NIA+ + A+ + GA+P + L S E A + +A G F
Sbjct: 67 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 364 RLLIIQERGLQRLMHLI 380
R L+I+ + L+ L+
Sbjct: 127 RDLVIKHGAIDPLLALL 143
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 200 VAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRIL 256
V G + ISLL H + I EQAV AL I R +V + G + PLL +L
Sbjct: 89 VVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 144
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 305 QSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF 363
Q + A+ NIA+ + A+ + GA+P + L S E A + +A G F
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 364 RLLIIQERGLQRLMHLI 380
R L+I+ + L+ L+
Sbjct: 128 RDLVIKHGAIDPLLALL 144
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 200 VAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRIL 256
V G + ISLL H + I EQAV AL I R +V + G + PLL +L
Sbjct: 89 VVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 144
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 305 QSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF 363
Q + A+ NIA+ + A+ + GA+P + L S E A + +A G F
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 364 RLLIIQERGLQRLMHLI 380
R L+I+ + L+ L+
Sbjct: 128 RDLVIKHGAIDPLLALL 144
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 298 RSGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATL 356
++ + Q + A+ NIA+ + A+ + GA+P + L S E A + +
Sbjct: 61 KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 120
Query: 357 AASGEYFRLLIIQERGLQRLMHLI 380
A G FR L+I+ + L+ L+
Sbjct: 121 AGDGSAFRDLVIKHGAIDPLLALL 144
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 200 VAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRIL 256
V G + ISLL H + I EQAV AL I R +V + G + PLL +L
Sbjct: 89 VVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 144
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 200 VAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRIL 256
V G + ISLL H + I EQAV AL I R +V + G + PLL +L
Sbjct: 115 VVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 170
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 298 RSGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATL 356
++ + Q + A+ NIA+ + A+ + GA+P + L S E A + +
Sbjct: 87 KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 146
Query: 357 AASGEYFRLLIIQERGLQRLMHLI 380
A G FR L+I+ + L+ L+
Sbjct: 147 AGDGSAFRDLVIKHGAIDPLLALL 170
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 200 VAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRIL 256
V G + ISLL H + I EQAV AL I R +V + G + PLL +L
Sbjct: 84 VVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 139
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 305 QSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF 363
Q + A+ NIA+ + A+ + GA+P + L S E A + +A G F
Sbjct: 63 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 364 RLLIIQERGLQRLMHLI 380
R L+I+ + L+ L+
Sbjct: 123 RDLVIKHGAIDPLLALL 139
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 200 VAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRIL 256
V G + ISLL H + I EQAV AL I R +V + G + PLL +L
Sbjct: 84 VVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 139
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 298 RSGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATL 356
++ + Q + A+ NIA+ + A+ + GA+P + L S E A + +
Sbjct: 56 KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 115
Query: 357 AASGEYFRLLIIQERGLQRLMHLI 380
A G FR L+I+ + L+ L+
Sbjct: 116 AGDGSAFRDLVIKHGAIDPLLALL 139
>pdb|2YL2|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
pdb|2YL2|B Chain B, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
Length = 540
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 517 FPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKVLQRLA 565
+PVM+ A+ GGG G RK + A + +L + + EVPG+ + RLA
Sbjct: 229 YPVMIKASE-GGGGKGIRK-VNNADDFPNLFRQVQAEVPGSPIFVMRLA 275
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%)
Query: 199 VVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILET 258
VV + G V L+ + + ++ +A AL+ I S K+V + + +++L T
Sbjct: 39 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT 98
Query: 259 GSMPLKEKA 267
GS+ +KE+A
Sbjct: 99 GSVEVKEQA 107
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%)
Query: 199 VVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILET 258
VV + G V L+ + + ++ +A AL+ I S K+V + + +++L T
Sbjct: 37 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT 96
Query: 259 GSMPLKEKA 267
GS+ +KE+A
Sbjct: 97 GSVEVKEQA 105
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 205 NVGYL--ISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMP 262
N G L + LL + +I+++A +S I + N E + V + + PL+++LE
Sbjct: 251 NAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYK 310
Query: 263 LKEKAAIGV 271
K++A +
Sbjct: 311 TKKEACWAI 319
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%)
Query: 199 VVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILET 258
VV + G V L+ + + ++ +A AL+ I S K+V + + +++L T
Sbjct: 37 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT 96
Query: 259 GSMPLKEKA 267
GS+ +KE+A
Sbjct: 97 GSVEVKEQA 105
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 205 NVGYL--ISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMP 262
N G L + LL + +I+++A +S I + N E + V + + PL+++LE
Sbjct: 251 NAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYK 310
Query: 263 LKEKAAIGV 271
K++A +
Sbjct: 311 TKKEACWAI 319
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%)
Query: 199 VVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILET 258
VV + G V L+ + + ++ +A AL+ I S K+V + + +++L T
Sbjct: 39 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT 98
Query: 259 GSMPLKEKA 267
GS+ +KE+A
Sbjct: 99 GSVEVKEQA 107
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%)
Query: 199 VVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILET 258
VV + G V L+ + + ++ +A AL+ I S K+V + + +++L T
Sbjct: 38 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT 97
Query: 259 GSMPLKEKA 267
GS+ +KE+A
Sbjct: 98 GSVEVKEQA 106
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%)
Query: 199 VVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILET 258
VV + G V L+ + + ++ +A AL+ I S K+V + + +++L T
Sbjct: 38 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT 97
Query: 259 GSMPLKEKA 267
GS+ +KE+A
Sbjct: 98 GSVEVKEQA 106
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%)
Query: 199 VVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILET 258
VV + G V L+ + + ++ +A AL+ I S K+V + + +++L T
Sbjct: 125 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT 184
Query: 259 GSMPLKEKA 267
GS+ +KE+A
Sbjct: 185 GSVEVKEQA 193
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 205 NVGYL--ISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMP 262
N G L + LL + +I+++A +S I + N E + V + + PL+++LE
Sbjct: 339 NAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYK 398
Query: 263 LKEKAAIGV 271
K++A +
Sbjct: 399 TKKEACWAI 407
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,224,237
Number of Sequences: 62578
Number of extensions: 341661
Number of successful extensions: 868
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 130
length of query: 579
length of database: 14,973,337
effective HSP length: 104
effective length of query: 475
effective length of database: 8,465,225
effective search space: 4020981875
effective search space used: 4020981875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)