Query 047123
Match_columns 579
No_of_seqs 415 out of 2432
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 07:51:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047123.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047123hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 1.8E-34 3.9E-39 335.1 45.6 400 158-565 9-513 (2102)
2 PLN03200 cellulose synthase-in 100.0 5.5E-33 1.2E-37 322.8 44.3 382 163-559 405-798 (2102)
3 KOG4224 Armadillo repeat prote 100.0 1.1E-31 2.4E-36 256.9 21.6 357 163-530 86-449 (550)
4 KOG0166 Karyopherin (importin) 100.0 1E-29 2.3E-34 260.5 36.4 388 164-557 68-473 (514)
5 KOG0166 Karyopherin (importin) 100.0 4E-30 8.7E-35 263.5 32.5 362 162-529 109-488 (514)
6 KOG4224 Armadillo repeat prote 100.0 8.5E-31 1.8E-35 250.9 24.3 358 164-530 128-496 (550)
7 COG5064 SRP1 Karyopherin (impo 100.0 2.5E-28 5.4E-33 232.2 29.0 400 158-565 67-495 (526)
8 COG5064 SRP1 Karyopherin (impo 100.0 9.8E-28 2.1E-32 228.1 23.0 360 163-530 115-499 (526)
9 PF05804 KAP: Kinesin-associat 99.9 9.3E-22 2E-26 213.1 40.6 380 165-562 253-641 (708)
10 PF05804 KAP: Kinesin-associat 99.9 8.4E-22 1.8E-26 213.4 40.0 322 224-557 268-592 (708)
11 KOG1048 Neural adherens juncti 99.8 4.3E-19 9.3E-24 188.0 27.3 375 162-544 233-699 (717)
12 KOG1048 Neural adherens juncti 99.8 1E-18 2.2E-23 185.2 28.0 362 206-573 235-692 (717)
13 KOG2122 Beta-catenin-binding p 99.8 7.4E-18 1.6E-22 184.9 24.8 355 165-529 200-603 (2195)
14 KOG4199 Uncharacterized conser 99.8 1.1E-16 2.4E-21 153.1 29.4 315 171-493 116-453 (461)
15 KOG4199 Uncharacterized conser 99.8 1.8E-16 3.9E-21 151.6 26.0 282 166-451 149-451 (461)
16 PF10508 Proteasom_PSMB: Prote 99.7 5.6E-14 1.2E-18 151.1 39.1 372 167-548 43-440 (503)
17 KOG2122 Beta-catenin-binding p 99.7 1E-15 2.2E-20 168.4 24.2 319 163-486 236-603 (2195)
18 PF10508 Proteasom_PSMB: Prote 99.7 1.2E-13 2.6E-18 148.5 38.3 339 160-505 75-441 (503)
19 KOG4500 Rho/Rac GTPase guanine 99.6 1.8E-13 3.8E-18 135.2 25.6 345 175-525 55-429 (604)
20 KOG4500 Rho/Rac GTPase guanine 99.6 3.6E-13 7.7E-18 133.1 25.1 384 163-553 88-502 (604)
21 KOG1222 Kinesin associated pro 99.6 5.7E-13 1.2E-17 133.1 26.0 322 222-556 280-605 (791)
22 PF04826 Arm_2: Armadillo-like 99.6 4E-13 8.7E-18 130.1 22.9 196 201-403 9-206 (254)
23 KOG0168 Putative ubiquitin fus 99.6 1.2E-12 2.6E-17 138.7 27.9 421 113-555 176-657 (1051)
24 PRK09687 putative lyase; Provi 99.5 1.9E-12 4.1E-17 128.3 24.7 254 163-480 24-278 (280)
25 PRK09687 putative lyase; Provi 99.5 2.1E-12 4.6E-17 127.9 23.2 253 205-523 24-278 (280)
26 PF04826 Arm_2: Armadillo-like 99.5 3.3E-12 7.1E-17 123.8 22.9 217 285-507 9-229 (254)
27 PRK13800 putative oxidoreducta 99.5 2.2E-11 4.7E-16 140.3 30.6 274 163-523 622-895 (897)
28 KOG1222 Kinesin associated pro 99.4 1.5E-10 3.2E-15 116.1 29.0 366 178-562 279-655 (791)
29 PRK13800 putative oxidoreducta 99.4 7E-11 1.5E-15 136.1 28.5 269 203-559 620-888 (897)
30 cd00256 VATPase_H VATPase_H, r 99.4 6.2E-10 1.3E-14 114.8 29.8 347 162-526 53-424 (429)
31 cd00020 ARM Armadillo/beta-cat 99.3 8E-11 1.7E-15 101.5 14.6 116 200-316 3-119 (120)
32 cd00020 ARM Armadillo/beta-cat 99.3 1.2E-10 2.6E-15 100.4 14.4 118 283-402 2-120 (120)
33 KOG1293 Proteins containing ar 99.3 5.7E-09 1.2E-13 109.1 28.8 386 165-557 12-520 (678)
34 KOG0168 Putative ubiquitin fus 99.2 2.2E-09 4.8E-14 114.5 22.5 404 163-575 168-637 (1051)
35 PF01602 Adaptin_N: Adaptin N 99.2 9.7E-09 2.1E-13 112.5 27.4 331 158-527 75-406 (526)
36 PF01602 Adaptin_N: Adaptin N 99.2 8.1E-09 1.8E-13 113.2 26.6 335 156-527 108-444 (526)
37 KOG2171 Karyopherin (importin) 99.2 6.4E-08 1.4E-12 107.5 32.2 378 166-559 83-493 (1075)
38 KOG2171 Karyopherin (importin) 99.1 1.1E-07 2.4E-12 105.6 30.6 315 159-483 199-548 (1075)
39 KOG2023 Nuclear transport rece 99.1 9.4E-08 2E-12 99.9 27.6 422 113-565 84-587 (885)
40 PF03224 V-ATPase_H_N: V-ATPas 99.1 9.1E-09 2E-13 104.5 20.2 218 173-392 68-304 (312)
41 KOG1293 Proteins containing ar 99.1 7.9E-08 1.7E-12 100.7 27.0 363 162-529 51-535 (678)
42 PF03224 V-ATPase_H_N: V-ATPas 99.1 2.1E-08 4.6E-13 101.8 21.7 226 204-433 55-303 (312)
43 PTZ00429 beta-adaptin; Provisi 99.1 1.5E-06 3.3E-11 96.7 37.3 330 163-530 33-365 (746)
44 KOG2023 Nuclear transport rece 99.0 1.2E-08 2.7E-13 106.2 19.1 318 203-530 127-508 (885)
45 cd00256 VATPase_H VATPase_H, r 99.0 1.1E-07 2.3E-12 98.5 24.8 274 165-443 104-424 (429)
46 KOG0946 ER-Golgi vesicle-tethe 99.0 1.8E-06 3.8E-11 92.2 33.7 318 162-486 22-401 (970)
47 KOG2759 Vacuolar H+-ATPase V1 99.0 5.2E-07 1.1E-11 90.3 26.6 343 162-527 65-438 (442)
48 PTZ00429 beta-adaptin; Provisi 98.9 4E-06 8.7E-11 93.3 35.3 256 161-443 67-325 (746)
49 KOG2160 Armadillo/beta-catenin 98.9 1.1E-07 2.4E-12 93.8 20.2 185 172-358 93-282 (342)
50 KOG0946 ER-Golgi vesicle-tethe 98.9 3.7E-06 8.1E-11 89.8 29.3 278 205-488 23-350 (970)
51 KOG2160 Armadillo/beta-catenin 98.9 5.4E-07 1.2E-11 89.0 21.7 183 259-443 95-281 (342)
52 KOG2973 Uncharacterized conser 98.8 2.8E-06 6.1E-11 81.7 22.3 292 249-565 5-310 (353)
53 PF05536 Neurochondrin: Neuroc 98.8 1.1E-05 2.3E-10 87.6 29.7 378 163-548 6-458 (543)
54 KOG2759 Vacuolar H+-ATPase V1 98.7 2.7E-06 6E-11 85.2 21.5 275 164-443 116-437 (442)
55 KOG1789 Endocytosis protein RM 98.7 2.5E-05 5.4E-10 85.6 29.0 324 178-510 1741-2143(2235)
56 KOG4413 26S proteasome regulat 98.7 4E-05 8.6E-10 74.4 27.1 336 163-504 83-459 (524)
57 KOG3678 SARM protein (with ste 98.6 4.8E-06 1E-10 84.0 20.3 263 198-482 174-450 (832)
58 TIGR02270 conserved hypothetic 98.6 1.9E-05 4.1E-10 82.3 25.6 244 163-488 55-300 (410)
59 KOG1062 Vesicle coat complex A 98.6 6.6E-05 1.4E-09 80.9 29.6 350 155-529 135-546 (866)
60 KOG2973 Uncharacterized conser 98.6 1.5E-05 3.2E-10 76.9 22.2 295 163-486 4-317 (353)
61 TIGR02270 conserved hypothetic 98.5 3.5E-05 7.7E-10 80.3 25.4 246 203-529 53-298 (410)
62 KOG3678 SARM protein (with ste 98.5 5.7E-06 1.2E-10 83.4 18.0 252 281-556 173-438 (832)
63 KOG4413 26S proteasome regulat 98.4 0.00024 5.2E-09 69.1 26.0 338 205-548 83-459 (524)
64 KOG4646 Uncharacterized conser 98.4 2.4E-06 5.1E-11 72.2 10.7 135 248-382 17-152 (173)
65 COG1413 FOG: HEAT repeat [Ener 98.4 0.00018 4E-09 74.0 25.1 248 163-484 44-304 (335)
66 KOG1059 Vesicle coat complex A 98.4 0.00021 4.6E-09 76.1 25.2 308 157-486 139-492 (877)
67 KOG1789 Endocytosis protein RM 98.3 0.00042 9.1E-09 76.4 27.0 325 221-553 1741-2142(2235)
68 KOG1241 Karyopherin (importin) 98.3 0.00044 9.5E-09 74.3 26.4 349 167-526 222-625 (859)
69 KOG0212 Uncharacterized conser 98.3 4.3E-05 9.4E-10 79.1 18.4 357 157-530 37-409 (675)
70 KOG1241 Karyopherin (importin) 98.2 0.00051 1.1E-08 73.8 24.6 329 158-525 359-709 (859)
71 KOG4646 Uncharacterized conser 98.2 2E-05 4.2E-10 66.8 9.9 123 204-327 16-139 (173)
72 KOG1242 Protein containing ada 98.1 0.0027 5.9E-08 67.3 26.7 322 161-509 133-465 (569)
73 KOG1824 TATA-binding protein-i 98.1 0.0013 2.7E-08 72.4 24.0 387 164-570 613-1073(1233)
74 KOG0212 Uncharacterized conser 98.1 0.0017 3.8E-08 67.6 23.7 310 158-486 163-482 (675)
75 KOG1062 Vesicle coat complex A 98.0 0.0039 8.4E-08 67.7 26.8 282 162-485 107-415 (866)
76 KOG1077 Vesicle coat complex A 98.0 0.002 4.4E-08 68.7 23.6 109 156-275 105-215 (938)
77 COG5369 Uncharacterized conser 98.0 0.0001 2.2E-09 75.9 13.4 189 180-369 407-605 (743)
78 COG5215 KAP95 Karyopherin (imp 97.9 0.006 1.3E-07 63.8 25.1 371 167-553 226-692 (858)
79 KOG0213 Splicing factor 3b, su 97.9 0.005 1.1E-07 66.2 24.9 368 175-553 525-937 (1172)
80 COG1413 FOG: HEAT repeat [Ener 97.9 0.0058 1.3E-07 62.8 25.2 218 162-443 74-303 (335)
81 PF14664 RICTOR_N: Rapamycin-i 97.9 0.0031 6.6E-08 65.2 22.7 254 184-443 5-268 (371)
82 PF00514 Arm: Armadillo/beta-c 97.9 3.2E-05 7E-10 52.6 5.3 41 193-234 1-41 (41)
83 KOG1060 Vesicle coat complex A 97.9 0.0045 9.7E-08 67.1 23.6 320 164-530 110-461 (968)
84 PF00514 Arm: Armadillo/beta-c 97.9 2E-05 4.3E-10 53.6 4.2 40 236-275 1-40 (41)
85 KOG1059 Vesicle coat complex A 97.9 0.015 3.2E-07 62.6 27.2 218 170-409 117-372 (877)
86 PF14664 RICTOR_N: Rapamycin-i 97.8 0.0023 5.1E-08 66.0 20.8 242 277-526 14-268 (371)
87 KOG0213 Splicing factor 3b, su 97.8 0.0061 1.3E-07 65.5 23.7 296 207-520 639-947 (1172)
88 KOG1517 Guanine nucleotide bin 97.8 0.001 2.2E-08 73.7 17.1 222 178-403 486-733 (1387)
89 KOG1824 TATA-binding protein-i 97.8 0.0066 1.4E-07 67.0 22.9 342 166-523 9-398 (1233)
90 KOG2734 Uncharacterized conser 97.7 0.011 2.3E-07 60.2 22.7 263 270-537 107-410 (536)
91 KOG1242 Protein containing ada 97.7 0.0093 2E-07 63.3 23.3 302 205-525 97-442 (569)
92 KOG1061 Vesicle coat complex A 97.7 0.0022 4.7E-08 69.5 18.9 305 161-486 120-455 (734)
93 KOG1060 Vesicle coat complex A 97.7 0.024 5.1E-07 61.7 26.1 284 165-484 38-350 (968)
94 PF13646 HEAT_2: HEAT repeats; 97.7 0.00017 3.8E-09 58.1 8.1 86 164-272 1-88 (88)
95 PF10165 Ric8: Guanine nucleot 97.7 0.0034 7.4E-08 66.8 20.0 260 183-443 2-336 (446)
96 KOG2734 Uncharacterized conser 97.7 0.013 2.9E-07 59.5 22.3 240 163-403 126-401 (536)
97 KOG1077 Vesicle coat complex A 97.7 0.031 6.7E-07 60.1 25.6 279 209-512 116-419 (938)
98 PF05536 Neurochondrin: Neuroc 97.7 0.01 2.2E-07 64.7 23.0 233 248-484 6-261 (543)
99 KOG1061 Vesicle coat complex A 97.7 0.0064 1.4E-07 66.0 20.8 252 160-436 47-300 (734)
100 PF10165 Ric8: Guanine nucleot 97.6 0.0065 1.4E-07 64.7 20.9 263 226-494 2-345 (446)
101 PF13646 HEAT_2: HEAT repeats; 97.6 0.00024 5.2E-09 57.3 7.9 88 373-480 1-88 (88)
102 COG5215 KAP95 Karyopherin (imp 97.6 0.018 3.9E-07 60.4 22.6 300 169-485 101-438 (858)
103 KOG2259 Uncharacterized conser 97.6 0.0021 4.6E-08 68.2 16.0 296 162-487 197-514 (823)
104 KOG0915 Uncharacterized conser 97.6 0.024 5.1E-07 65.9 25.1 358 156-554 988-1368(1702)
105 PF12348 CLASP_N: CLASP N term 97.6 0.0021 4.7E-08 62.0 15.2 182 171-358 16-206 (228)
106 COG5181 HSH155 U2 snRNP splice 97.6 0.012 2.7E-07 62.0 21.1 296 162-484 604-912 (975)
107 COG5369 Uncharacterized conser 97.5 0.00041 8.9E-09 71.7 9.7 186 305-495 406-605 (743)
108 KOG1517 Guanine nucleotide bin 97.5 0.0028 6.1E-08 70.4 16.2 178 305-485 484-672 (1387)
109 COG5231 VMA13 Vacuolar H+-ATPa 97.5 0.023 5.1E-07 55.5 20.1 260 178-443 124-427 (432)
110 KOG2259 Uncharacterized conser 97.4 0.024 5.2E-07 60.5 20.5 242 252-520 203-468 (823)
111 COG5181 HSH155 U2 snRNP splice 97.4 0.0048 1E-07 65.0 15.1 259 205-486 605-872 (975)
112 KOG1058 Vesicle coat complex C 97.3 0.034 7.4E-07 60.2 20.6 322 165-530 23-349 (948)
113 KOG0567 HEAT repeat-containing 97.2 0.082 1.8E-06 50.6 20.1 242 176-483 19-279 (289)
114 PF12460 MMS19_C: RNAPII trans 97.2 0.43 9.2E-06 50.6 29.6 345 165-530 2-397 (415)
115 PF12348 CLASP_N: CLASP N term 97.2 0.0047 1E-07 59.7 11.9 182 216-403 18-207 (228)
116 KOG0211 Protein phosphatase 2A 97.2 0.059 1.3E-06 60.2 21.5 344 158-520 232-618 (759)
117 KOG0567 HEAT repeat-containing 97.1 0.058 1.3E-06 51.6 18.1 216 174-443 48-279 (289)
118 COG5240 SEC21 Vesicle coat com 97.1 0.12 2.5E-06 54.6 21.4 257 207-484 267-555 (898)
119 smart00185 ARM Armadillo/beta- 97.1 0.0013 2.8E-08 44.4 5.0 40 278-317 2-41 (41)
120 KOG1240 Protein kinase contain 97.1 0.043 9.2E-07 62.5 19.1 299 164-487 424-728 (1431)
121 KOG4535 HEAT and armadillo rep 97.0 0.037 8.1E-07 57.0 16.9 176 344-523 406-599 (728)
122 smart00185 ARM Armadillo/beta- 97.0 0.0017 3.8E-08 43.7 5.4 40 237-276 2-41 (41)
123 KOG0211 Protein phosphatase 2A 96.9 0.22 4.7E-06 55.8 23.2 142 163-312 198-340 (759)
124 PF13513 HEAT_EZ: HEAT-like re 96.9 0.0037 8E-08 45.4 6.5 53 429-482 1-55 (55)
125 PF08569 Mo25: Mo25-like; Int 96.9 0.28 6.1E-06 49.9 21.9 222 324-553 71-313 (335)
126 COG5231 VMA13 Vacuolar H+-ATPa 96.9 0.086 1.9E-06 51.7 17.0 223 261-484 163-428 (432)
127 KOG4535 HEAT and armadillo rep 96.9 0.0077 1.7E-07 61.8 10.4 298 176-484 269-603 (728)
128 PF05918 API5: Apoptosis inhib 96.8 0.21 4.5E-06 53.9 21.1 297 166-492 27-353 (556)
129 PF11841 DUF3361: Domain of un 96.7 0.048 1E-06 48.6 13.3 138 406-546 4-150 (160)
130 KOG0915 Uncharacterized conser 96.7 0.43 9.3E-06 56.0 23.7 322 202-538 954-1317(1702)
131 PF05004 IFRD: Interferon-rela 96.7 0.2 4.3E-06 50.7 19.2 196 157-357 38-256 (309)
132 KOG1943 Beta-tubulin folding c 96.7 1.8 3.9E-05 49.4 29.0 312 159-485 338-706 (1133)
133 PF09759 Atx10homo_assoc: Spin 96.7 0.011 2.4E-07 48.6 8.0 68 179-246 3-71 (102)
134 PF13513 HEAT_EZ: HEAT-like re 96.6 0.0031 6.7E-08 45.8 4.3 55 219-274 1-55 (55)
135 PF04078 Rcd1: Cell differenti 96.6 0.31 6.7E-06 47.0 18.4 204 218-457 8-231 (262)
136 KOG1058 Vesicle coat complex C 96.6 0.3 6.5E-06 53.2 20.0 291 158-487 130-466 (948)
137 PRK14707 hypothetical protein; 96.5 2.4 5.3E-05 51.7 28.6 377 175-562 345-732 (2710)
138 KOG4151 Myosin assembly protei 96.5 0.12 2.6E-06 56.8 17.3 237 236-481 493-738 (748)
139 PF13764 E3_UbLigase_R4: E3 ub 96.5 0.75 1.6E-05 52.1 24.1 240 200-447 113-409 (802)
140 COG5240 SEC21 Vesicle coat com 96.5 0.47 1E-05 50.2 20.6 181 249-450 266-449 (898)
141 PRK14707 hypothetical protein; 96.5 3.2 6.9E-05 50.9 29.1 380 174-564 302-692 (2710)
142 PF09759 Atx10homo_assoc: Spin 96.5 0.014 3.1E-07 47.9 7.8 59 345-403 2-60 (102)
143 KOG1832 HIV-1 Vpr-binding prot 96.4 0.44 9.5E-06 52.8 20.4 314 218-538 366-782 (1516)
144 KOG3036 Protein involved in ce 96.4 0.5 1.1E-05 44.9 18.2 148 305-455 96-258 (293)
145 PF11841 DUF3361: Domain of un 96.3 0.17 3.7E-06 45.1 14.1 119 240-358 4-131 (160)
146 PF05004 IFRD: Interferon-rela 96.3 0.6 1.3E-05 47.2 20.0 187 291-483 46-256 (309)
147 KOG2274 Predicted importin 9 [ 96.3 0.6 1.3E-05 52.1 20.7 245 260-512 463-723 (1005)
148 KOG1943 Beta-tubulin folding c 96.2 1.2 2.6E-05 50.8 23.1 254 203-484 340-611 (1133)
149 PF06025 DUF913: Domain of Unk 96.1 0.27 5.8E-06 51.1 16.6 221 224-463 3-256 (379)
150 KOG4151 Myosin assembly protei 96.1 0.29 6.2E-06 53.9 17.0 209 195-412 495-711 (748)
151 COG5096 Vesicle coat complex, 96.0 0.15 3.3E-06 56.7 14.9 142 160-316 53-194 (757)
152 KOG1240 Protein kinase contain 96.0 0.85 1.8E-05 52.5 20.5 294 206-527 424-725 (1431)
153 COG5096 Vesicle coat complex, 96.0 0.46 9.9E-06 53.0 18.4 169 171-359 28-196 (757)
154 KOG2274 Predicted importin 9 [ 95.9 3 6.5E-05 46.8 23.8 178 259-443 503-688 (1005)
155 PF08045 CDC14: Cell division 95.9 0.35 7.7E-06 46.9 15.2 96 263-358 107-207 (257)
156 PF12755 Vac14_Fab1_bd: Vacuol 95.9 0.12 2.7E-06 42.3 10.4 89 390-483 3-95 (97)
157 KOG1078 Vesicle coat complex C 95.8 0.71 1.5E-05 50.8 18.3 124 344-483 407-531 (865)
158 PF07814 WAPL: Wings apart-lik 95.7 0.94 2E-05 46.9 18.7 269 206-486 23-357 (361)
159 PF11698 V-ATPase_H_C: V-ATPas 95.7 0.04 8.6E-07 46.6 6.7 72 162-234 43-115 (119)
160 PF04063 DUF383: Domain of unk 95.6 0.096 2.1E-06 48.8 10.0 120 261-381 9-157 (192)
161 PF12717 Cnd1: non-SMC mitotic 95.6 0.79 1.7E-05 42.3 15.9 92 175-277 1-93 (178)
162 KOG1248 Uncharacterized conser 95.4 7 0.00015 45.4 32.9 221 259-485 666-899 (1176)
163 KOG2062 26S proteasome regulat 95.3 2.1 4.6E-05 46.9 19.5 205 330-570 520-727 (929)
164 KOG3036 Protein involved in ce 95.3 2.9 6.2E-05 39.9 21.3 179 263-443 95-290 (293)
165 PF08045 CDC14: Cell division 95.3 0.31 6.8E-06 47.3 12.3 100 303-402 106-207 (257)
166 PF12719 Cnd3: Nuclear condens 95.2 0.7 1.5E-05 46.5 15.3 169 162-339 26-207 (298)
167 PF04063 DUF383: Domain of unk 95.1 0.22 4.8E-06 46.4 10.6 121 388-509 10-159 (192)
168 KOG3665 ZYG-1-like serine/thre 95.0 5.5 0.00012 45.0 23.0 156 352-510 494-680 (699)
169 PF12719 Cnd3: Nuclear condens 95.0 1 2.2E-05 45.3 16.0 170 205-384 27-210 (298)
170 KOG2956 CLIP-associating prote 94.9 2.2 4.7E-05 44.5 17.6 187 162-358 286-477 (516)
171 PF11701 UNC45-central: Myosin 94.9 0.46 1E-05 42.8 11.8 144 331-482 5-157 (157)
172 PF04078 Rcd1: Cell differenti 94.8 0.49 1.1E-05 45.7 12.1 146 180-327 68-228 (262)
173 KOG0414 Chromosome condensatio 94.8 0.26 5.7E-06 56.3 11.6 131 416-562 920-1056(1251)
174 PF13764 E3_UbLigase_R4: E3 ub 94.7 6 0.00013 45.1 22.2 181 245-431 115-335 (802)
175 PF05918 API5: Apoptosis inhib 94.7 7.1 0.00015 42.4 21.7 175 259-455 34-223 (556)
176 PF12755 Vac14_Fab1_bd: Vacuol 94.7 0.3 6.6E-06 40.0 9.0 90 179-274 3-94 (97)
177 PF11698 V-ATPase_H_C: V-ATPas 94.6 0.077 1.7E-06 44.9 5.3 70 456-526 45-114 (119)
178 PF07814 WAPL: Wings apart-lik 94.3 3.3 7.1E-05 42.9 18.0 242 160-403 19-356 (361)
179 KOG2999 Regulator of Rac1, req 94.3 1.2 2.5E-05 47.2 14.2 153 249-403 85-243 (713)
180 KOG4653 Uncharacterized conser 94.1 2.6 5.7E-05 47.0 17.0 215 255-482 735-962 (982)
181 KOG1967 DNA repair/transcripti 94.0 1.1 2.3E-05 50.4 13.9 147 370-520 866-1017(1030)
182 KOG2999 Regulator of Rac1, req 93.9 2.2 4.7E-05 45.3 15.2 151 206-358 85-242 (713)
183 KOG1820 Microtubule-associated 93.8 1.6 3.4E-05 49.6 15.3 187 163-357 254-442 (815)
184 KOG4653 Uncharacterized conser 93.8 3.9 8.4E-05 45.8 17.5 179 296-485 735-919 (982)
185 KOG1991 Nuclear transport rece 93.7 16 0.00034 41.8 23.2 234 246-486 409-673 (1010)
186 KOG1020 Sister chromatid cohes 93.6 21 0.00045 42.9 30.2 142 161-317 815-960 (1692)
187 PF12717 Cnd1: non-SMC mitotic 93.6 5.9 0.00013 36.4 17.7 91 301-403 1-93 (178)
188 PF08569 Mo25: Mo25-like; Int 93.6 9.7 0.00021 38.9 26.4 217 243-463 72-306 (335)
189 PF02985 HEAT: HEAT repeat; I 93.5 0.13 2.8E-06 32.3 3.6 28 206-234 2-29 (31)
190 KOG1248 Uncharacterized conser 93.5 19 0.00042 42.0 24.2 226 216-455 665-911 (1176)
191 PF06025 DUF913: Domain of Unk 93.4 7.9 0.00017 40.3 18.6 95 164-259 108-208 (379)
192 KOG2032 Uncharacterized conser 92.9 14 0.00031 39.0 19.1 157 158-317 254-415 (533)
193 KOG1991 Nuclear transport rece 92.7 22 0.00048 40.7 22.2 277 204-486 410-713 (1010)
194 PF06371 Drf_GBD: Diaphanous G 92.2 2.1 4.7E-05 39.5 11.7 110 163-275 67-186 (187)
195 PF06371 Drf_GBD: Diaphanous G 91.9 1.5 3.3E-05 40.5 10.3 77 281-357 100-186 (187)
196 PF11701 UNC45-central: Myosin 91.8 1 2.2E-05 40.6 8.7 146 291-441 6-156 (157)
197 PF02985 HEAT: HEAT repeat; I 91.4 0.32 7E-06 30.4 3.5 27 456-483 2-28 (31)
198 KOG1967 DNA repair/transcripti 91.3 1.9 4.1E-05 48.5 11.3 185 207-398 818-1020(1030)
199 PF05659 RPW8: Arabidopsis bro 91.3 0.37 8E-06 42.8 5.0 75 29-104 14-88 (147)
200 PF12031 DUF3518: Domain of un 91.2 0.32 7E-06 46.1 4.7 122 388-512 81-231 (257)
201 KOG1832 HIV-1 Vpr-binding prot 90.8 1.1 2.4E-05 49.8 8.9 206 237-455 536-784 (1516)
202 KOG2956 CLIP-associating prote 90.4 14 0.0003 38.7 15.8 167 264-443 304-476 (516)
203 PF12460 MMS19_C: RNAPII trans 90.3 14 0.0003 39.1 16.9 203 248-461 190-413 (415)
204 KOG2611 Neurochondrin/leucine- 90.1 23 0.0005 37.3 17.1 128 209-338 16-161 (698)
205 KOG0414 Chromosome condensatio 89.9 7.2 0.00016 45.3 14.6 140 205-358 920-1064(1251)
206 KOG2062 26S proteasome regulat 89.8 6.6 0.00014 43.3 13.5 157 295-478 526-690 (929)
207 KOG2611 Neurochondrin/leucine- 89.6 30 0.00066 36.4 19.3 183 252-442 16-223 (698)
208 PF14668 RICTOR_V: Rapamycin-i 89.5 2.4 5.2E-05 32.6 7.4 67 179-247 4-70 (73)
209 PF14668 RICTOR_V: Rapamycin-i 89.2 2.1 4.5E-05 33.0 6.9 66 264-329 4-70 (73)
210 PF12031 DUF3518: Domain of un 89.2 0.87 1.9E-05 43.3 5.7 94 469-562 138-237 (257)
211 PF08324 PUL: PUL domain; Int 88.5 6.4 0.00014 38.8 12.0 154 222-376 80-249 (268)
212 PF12530 DUF3730: Protein of u 88.2 26 0.00056 33.9 19.1 137 206-358 2-151 (234)
213 KOG1078 Vesicle coat complex C 87.9 51 0.0011 37.0 24.6 67 247-317 241-311 (865)
214 PF08167 RIX1: rRNA processing 87.7 6 0.00013 36.0 10.2 115 157-275 20-142 (165)
215 cd03569 VHS_Hrs_Vps27p VHS dom 87.4 4.1 8.9E-05 36.0 8.7 73 162-234 41-114 (142)
216 KOG1820 Microtubule-associated 87.1 22 0.00048 40.7 16.1 177 296-486 261-445 (815)
217 PF14225 MOR2-PAG1_C: Cell mor 86.7 34 0.00073 33.7 17.9 173 291-484 67-254 (262)
218 KOG0301 Phospholipase A2-activ 86.3 30 0.00065 38.0 15.6 166 340-509 555-728 (745)
219 KOG2933 Uncharacterized conser 86.2 10 0.00022 37.7 11.2 141 162-315 88-232 (334)
220 KOG2137 Protein kinase [Signal 85.8 33 0.00071 38.1 15.9 133 327-468 387-521 (700)
221 PF11865 DUF3385: Domain of un 85.3 7.2 0.00016 35.2 9.4 144 205-356 11-155 (160)
222 COG5209 RCD1 Uncharacterized p 85.3 15 0.00032 34.7 11.2 146 264-411 117-277 (315)
223 PF08167 RIX1: rRNA processing 85.3 11 0.00023 34.3 10.6 111 372-487 26-146 (165)
224 COG5656 SXM1 Importin, protein 85.3 69 0.0015 35.9 21.6 314 163-486 372-713 (970)
225 PF01347 Vitellogenin_N: Lipop 85.0 64 0.0014 36.1 18.9 196 248-476 396-614 (618)
226 KOG2025 Chromosome condensatio 84.6 72 0.0016 35.5 21.9 130 261-398 60-189 (892)
227 cd03568 VHS_STAM VHS domain fa 84.6 6.8 0.00015 34.7 8.7 73 161-234 36-110 (144)
228 COG5218 YCG1 Chromosome conden 84.6 21 0.00046 38.5 13.3 107 371-489 91-201 (885)
229 KOG1243 Protein kinase [Genera 84.5 14 0.0003 40.7 12.3 252 167-440 259-511 (690)
230 COG5116 RPN2 26S proteasome re 84.1 6 0.00013 42.3 9.2 117 329-463 551-671 (926)
231 PF08324 PUL: PUL domain; Int 82.9 6.3 0.00014 38.9 8.7 150 344-494 78-241 (268)
232 KOG3665 ZYG-1-like serine/thre 82.5 26 0.00057 39.7 14.2 194 185-398 494-693 (699)
233 smart00638 LPD_N Lipoprotein N 82.5 85 0.0018 34.8 22.0 159 289-474 394-568 (574)
234 KOG2032 Uncharacterized conser 82.5 72 0.0016 33.9 19.9 140 216-358 269-415 (533)
235 cd03561 VHS VHS domain family; 81.9 11 0.00025 32.7 8.9 72 162-234 37-112 (133)
236 KOG1020 Sister chromatid cohes 81.8 19 0.00042 43.1 12.8 139 330-482 817-958 (1692)
237 cd03567 VHS_GGA VHS domain fam 81.8 11 0.00024 33.1 8.8 73 162-234 38-116 (139)
238 smart00288 VHS Domain present 81.8 10 0.00022 33.0 8.6 73 161-234 36-111 (133)
239 COG5209 RCD1 Uncharacterized p 81.6 16 0.00034 34.6 9.8 108 345-455 116-229 (315)
240 KOG1243 Protein kinase [Genera 81.4 26 0.00056 38.7 12.9 234 259-512 266-501 (690)
241 PF10363 DUF2435: Protein of u 81.1 8.5 0.00018 31.1 7.2 71 164-237 5-75 (92)
242 KOG2025 Chromosome condensatio 80.4 53 0.0011 36.5 14.6 106 373-490 87-196 (892)
243 PF14500 MMS19_N: Dos2-interac 80.2 25 0.00054 34.6 11.6 148 334-487 4-156 (262)
244 KOG0301 Phospholipase A2-activ 79.7 93 0.002 34.4 16.2 166 167-339 549-726 (745)
245 PF11707 Npa1: Ribosome 60S bi 78.6 82 0.0018 32.2 17.7 154 206-360 58-239 (330)
246 PF14225 MOR2-PAG1_C: Cell mor 76.7 80 0.0017 31.1 17.8 216 163-400 8-252 (262)
247 KOG2137 Protein kinase [Signal 76.5 43 0.00094 37.2 12.9 132 415-554 389-521 (700)
248 COG5116 RPN2 26S proteasome re 75.3 29 0.00064 37.3 10.8 99 203-317 550-650 (926)
249 PF10363 DUF2435: Protein of u 75.2 11 0.00024 30.5 6.2 81 291-380 6-86 (92)
250 PF14726 RTTN_N: Rotatin, an a 75.2 31 0.00068 28.2 8.9 94 177-272 2-96 (98)
251 PF11707 Npa1: Ribosome 60S bi 75.2 1E+02 0.0022 31.5 23.2 156 331-488 58-241 (330)
252 cd03561 VHS VHS domain family; 74.8 28 0.0006 30.3 9.2 74 415-488 37-116 (133)
253 KOG1566 Conserved protein Mo25 74.3 1E+02 0.0022 31.0 18.7 218 242-463 74-309 (342)
254 KOG1566 Conserved protein Mo25 73.7 1E+02 0.0022 30.9 18.4 200 323-529 73-288 (342)
255 COG5098 Chromosome condensatio 73.5 43 0.00094 37.0 11.7 174 341-540 908-1087(1128)
256 PF00790 VHS: VHS domain; Int 73.1 22 0.00049 31.2 8.3 74 161-234 41-118 (140)
257 COG5098 Chromosome condensatio 72.4 53 0.0011 36.4 12.0 108 417-528 301-416 (1128)
258 PF12530 DUF3730: Protein of u 72.3 96 0.0021 29.9 20.5 170 291-479 3-184 (234)
259 KOG1788 Uncharacterized conser 70.3 80 0.0017 36.8 13.1 80 322-403 901-983 (2799)
260 PF01347 Vitellogenin_N: Lipop 70.2 1.9E+02 0.004 32.4 20.2 172 203-400 394-587 (618)
261 cd03568 VHS_STAM VHS domain fa 69.6 35 0.00077 30.1 8.7 73 415-487 37-113 (144)
262 PF14726 RTTN_N: Rotatin, an a 68.1 41 0.0009 27.5 8.1 67 245-311 28-94 (98)
263 cd03569 VHS_Hrs_Vps27p VHS dom 67.1 43 0.00092 29.5 8.7 72 415-486 41-116 (142)
264 KOG1949 Uncharacterized conser 66.9 1.3E+02 0.0028 33.7 13.4 142 167-315 179-329 (1005)
265 PF11865 DUF3385: Domain of un 66.7 98 0.0021 27.8 11.6 143 330-484 11-157 (160)
266 COG5218 YCG1 Chromosome conden 66.1 2.1E+02 0.0045 31.4 14.6 101 203-309 90-191 (885)
267 cd03572 ENTH_epsin_related ENT 65.4 45 0.00098 28.5 8.1 70 416-485 39-120 (122)
268 PF13251 DUF4042: Domain of un 65.3 98 0.0021 28.6 11.0 110 330-443 40-173 (182)
269 PF12830 Nipped-B_C: Sister ch 65.3 31 0.00068 31.9 7.9 82 160-247 6-87 (187)
270 PF08506 Cse1: Cse1; InterPro 65.2 1.8E+02 0.0039 30.3 14.5 129 343-479 225-370 (370)
271 PF04821 TIMELESS: Timeless pr 64.9 1.1E+02 0.0025 30.0 12.2 165 162-358 13-208 (266)
272 KOG0891 DNA-dependent protein 64.7 1.8E+02 0.0038 37.8 16.0 264 254-527 488-763 (2341)
273 smart00638 LPD_N Lipoprotein N 64.6 2.3E+02 0.005 31.3 20.1 133 372-523 394-541 (574)
274 KOG2933 Uncharacterized conser 64.0 47 0.001 33.1 8.9 143 206-356 90-232 (334)
275 PF14631 FancD2: Fanconi anaem 63.8 3.7E+02 0.008 33.5 19.3 332 163-520 193-577 (1426)
276 smart00288 VHS Domain present 63.1 54 0.0012 28.5 8.5 72 415-486 37-113 (133)
277 PF13251 DUF4042: Domain of un 60.8 1.4E+02 0.003 27.6 11.6 154 178-360 2-176 (182)
278 PF10521 DUF2454: Protein of u 60.8 75 0.0016 31.6 10.2 70 248-317 120-203 (282)
279 KOG1410 Nuclear transport rece 60.0 2.9E+02 0.0062 30.9 19.5 249 206-466 7-313 (1082)
280 PF14500 MMS19_N: Dos2-interac 57.4 2E+02 0.0043 28.3 18.3 214 166-403 3-238 (262)
281 cd00197 VHS_ENTH_ANTH VHS, ENT 57.2 96 0.0021 25.9 8.9 72 161-232 36-113 (115)
282 PF12231 Rif1_N: Rap1-interact 56.2 2.5E+02 0.0055 29.1 26.2 255 218-484 59-352 (372)
283 PF11791 Aconitase_B_N: Aconit 56.2 1.3E+02 0.0028 26.7 9.4 71 472-566 80-150 (154)
284 PF10521 DUF2454: Protein of u 56.1 1.2E+02 0.0025 30.2 10.7 70 205-275 120-202 (282)
285 PLN03076 ARF guanine nucleotid 56.1 5.4E+02 0.012 32.9 19.8 295 222-528 1109-1490(1780)
286 PF07923 N1221: N1221-like pro 55.6 36 0.00078 34.1 7.0 60 155-214 53-126 (293)
287 cd03567 VHS_GGA VHS domain fam 54.1 1E+02 0.0022 27.0 8.7 72 415-486 38-118 (139)
288 PF06685 DUF1186: Protein of u 53.8 2.2E+02 0.0048 27.7 13.8 91 325-430 69-169 (249)
289 PF12054 DUF3535: Domain of un 53.7 3E+02 0.0064 29.4 13.8 80 426-509 287-366 (441)
290 cd08050 TAF6 TATA Binding Prot 52.8 1.3E+02 0.0029 30.8 10.7 142 162-315 178-338 (343)
291 PF03130 HEAT_PBS: PBS lyase H 52.8 7.4 0.00016 23.4 0.9 26 221-257 1-26 (27)
292 PF00790 VHS: VHS domain; Int 51.2 48 0.001 29.1 6.3 72 415-486 42-120 (140)
293 KOG4464 Signaling protein RIC- 51.1 3.1E+02 0.0068 28.7 17.3 260 250-510 48-369 (532)
294 PF04064 DUF384: Domain of unk 50.6 23 0.00049 25.9 3.3 42 522-565 2-44 (58)
295 PLN03076 ARF guanine nucleotid 49.9 6.6E+02 0.014 32.1 23.8 261 173-443 1148-1488(1780)
296 PF08506 Cse1: Cse1; InterPro 49.4 2E+02 0.0043 29.9 11.4 131 177-312 226-370 (370)
297 cd03565 VHS_Tom1 VHS domain fa 49.0 1.7E+02 0.0036 25.8 9.3 73 162-234 38-115 (141)
298 PF13001 Ecm29: Proteasome sta 48.0 4E+02 0.0086 29.0 14.0 174 299-487 248-446 (501)
299 PF10474 DUF2451: Protein of u 47.5 17 0.00036 35.2 2.9 77 41-125 91-167 (234)
300 cd03572 ENTH_epsin_related ENT 47.4 1.3E+02 0.0029 25.7 8.0 75 159-234 35-119 (122)
301 KOG1087 Cytosolic sorting prot 45.8 67 0.0015 34.4 7.3 71 162-232 38-110 (470)
302 PF01603 B56: Protein phosphat 45.7 3.9E+02 0.0084 28.2 15.1 231 243-487 129-373 (409)
303 KOG1848 Uncharacterized conser 45.2 3.5E+02 0.0075 33.0 13.1 108 247-358 840-958 (1610)
304 PF08216 CTNNBL: Catenin-beta- 43.5 29 0.00062 28.9 3.3 42 305-346 63-104 (108)
305 smart00567 EZ_HEAT E-Z type HE 42.9 29 0.00063 21.1 2.6 28 220-258 2-29 (30)
306 KOG1949 Uncharacterized conser 42.8 5.4E+02 0.012 29.0 18.4 143 207-356 177-329 (1005)
307 PF10274 ParcG: Parkin co-regu 42.4 2.8E+02 0.0061 25.6 10.9 73 161-234 37-109 (183)
308 COG5656 SXM1 Importin, protein 40.6 6E+02 0.013 28.9 25.4 122 161-286 407-538 (970)
309 KOG4231 Intracellular membrane 38.6 84 0.0018 33.5 6.4 60 456-515 329-388 (763)
310 PF14663 RasGEF_N_2: Rapamycin 38.3 85 0.0018 26.5 5.6 40 205-246 9-48 (115)
311 KOG1410 Nuclear transport rece 37.7 6.4E+02 0.014 28.4 24.0 265 163-443 6-333 (1082)
312 PF06685 DUF1186: Protein of u 36.9 4.1E+02 0.0089 25.9 16.2 79 246-337 72-161 (249)
313 PF12830 Nipped-B_C: Sister ch 36.8 3.4E+02 0.0074 25.0 14.5 69 289-362 9-78 (187)
314 cd08050 TAF6 TATA Binding Prot 36.7 3.6E+02 0.0077 27.7 10.9 124 270-400 198-338 (343)
315 PF08389 Xpo1: Exportin 1-like 36.5 2.7E+02 0.006 23.8 10.2 102 415-522 26-148 (148)
316 PF08216 CTNNBL: Catenin-beta- 35.9 50 0.0011 27.5 3.6 41 223-264 64-104 (108)
317 PF08389 Xpo1: Exportin 1-like 35.6 2.1E+02 0.0046 24.6 8.1 104 204-312 26-148 (148)
318 KOG4231 Intracellular membrane 34.8 41 0.0009 35.7 3.6 58 387-445 342-400 (763)
319 PF11791 Aconitase_B_N: Aconit 34.6 1.6E+02 0.0036 26.1 6.7 47 432-487 80-126 (154)
320 KOG1788 Uncharacterized conser 33.8 9E+02 0.019 28.9 16.0 128 204-339 466-599 (2799)
321 PF06012 DUF908: Domain of Unk 33.5 2.2E+02 0.0048 29.0 8.7 58 220-278 237-299 (329)
322 KOG4464 Signaling protein RIC- 33.2 6E+02 0.013 26.7 22.4 132 207-340 48-198 (532)
323 PF04499 SAPS: SIT4 phosphatas 33.1 4E+02 0.0087 28.8 10.9 114 196-315 12-146 (475)
324 PF04499 SAPS: SIT4 phosphatas 33.0 1.5E+02 0.0033 31.9 7.7 112 410-526 16-147 (475)
325 KOG2073 SAP family cell cycle 32.6 4.5E+02 0.0097 30.5 11.5 60 240-299 183-250 (838)
326 PLN03205 ATR interacting prote 32.5 2.3E+02 0.0049 29.5 8.2 113 289-403 324-447 (652)
327 PF12726 SEN1_N: SEN1 N termin 31.4 6.7E+02 0.014 28.8 13.1 166 291-471 444-613 (727)
328 PRK09169 hypothetical protein; 30.7 1.3E+03 0.029 30.1 29.5 52 178-230 180-231 (2316)
329 KOG4524 Uncharacterized conser 30.0 3.2E+02 0.0069 31.9 9.6 96 162-258 803-900 (1014)
330 KOG0413 Uncharacterized conser 30.0 3.5E+02 0.0075 31.7 9.7 127 343-483 945-1072(1529)
331 PF13001 Ecm29: Proteasome sta 29.5 7.6E+02 0.017 26.8 16.6 172 257-443 247-442 (501)
332 PF09324 DUF1981: Domain of un 29.4 2.6E+02 0.0056 22.1 6.7 66 201-271 14-83 (86)
333 KOG0413 Uncharacterized conser 29.3 3E+02 0.0066 32.1 9.2 126 175-315 944-1071(1529)
334 PF10274 ParcG: Parkin co-regu 29.1 4.7E+02 0.01 24.2 10.4 70 389-461 54-127 (183)
335 KOG2676 Uncharacterized conser 28.9 58 0.0013 33.1 3.4 62 182-244 376-439 (478)
336 PF12331 DUF3636: Protein of u 28.4 4.3E+02 0.0092 23.5 8.3 39 176-214 108-146 (149)
337 KOG2676 Uncharacterized conser 27.9 82 0.0018 32.1 4.2 63 307-369 375-440 (478)
338 KOG1848 Uncharacterized conser 27.5 1.1E+03 0.024 29.1 13.5 187 299-507 853-1050(1610)
339 cd00197 VHS_ENTH_ANTH VHS, ENT 26.8 3.7E+02 0.008 22.3 9.1 68 415-482 37-113 (115)
340 PF01365 RYDR_ITPR: RIH domain 26.6 3.5E+02 0.0076 25.3 8.3 113 409-528 39-170 (207)
341 PF06012 DUF908: Domain of Unk 25.3 3.2E+02 0.0069 27.8 8.3 57 263-319 238-299 (329)
342 PF04388 Hamartin: Hamartin pr 25.3 6.9E+02 0.015 28.3 11.5 59 468-526 81-139 (668)
343 PF07304 SRA1: Steroid recepto 25.2 1.8E+02 0.0039 26.1 5.6 61 22-93 43-103 (157)
344 KOG0392 SNF2 family DNA-depend 24.9 2.4E+02 0.0052 33.9 7.6 119 151-274 805-923 (1549)
345 PF04821 TIMELESS: Timeless pr 24.9 6.7E+02 0.014 24.6 11.4 37 240-276 33-72 (266)
346 PF14663 RasGEF_N_2: Rapamycin 24.2 2.6E+02 0.0056 23.5 6.2 41 160-201 6-46 (115)
347 PF04388 Hamartin: Hamartin pr 24.0 1E+03 0.022 27.0 12.6 58 218-275 81-139 (668)
348 PF07571 DUF1546: Protein of u 23.3 2.7E+02 0.0059 22.3 5.8 57 427-483 18-77 (92)
349 KOG0889 Histone acetyltransfer 22.9 2.1E+03 0.046 29.8 17.8 311 249-566 986-1343(3550)
350 PF07923 N1221: N1221-like pro 21.7 1.4E+02 0.003 29.9 4.7 57 201-258 57-127 (293)
351 PF12397 U3snoRNP10: U3 small 21.0 5E+02 0.011 21.7 10.5 68 416-486 7-76 (121)
352 KOG4524 Uncharacterized conser 20.6 3.9E+02 0.0086 31.1 8.2 94 289-382 804-900 (1014)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.8e-34 Score=335.08 Aligned_cols=400 Identities=22% Similarity=0.247 Sum_probs=336.7
Q ss_pred hHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHhccChhhHHHHHh-hCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc
Q 047123 158 QDLVLFIRDIFTRLQIG--GVEFKKKALESLLQLLKDDDKSAAVVAK-EGNVGYLISLLDFHHQSSIREQAVLALSIIVS 234 (579)
Q Consensus 158 ~~~~~~v~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~ 234 (579)
+.....+..+++.|+++ +++.+..|+..|+.+++++++++..+.+ .|+||.|+.+|. +++..+|+.|+.+|.+++.
T Consensus 9 ~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~-sg~~~vk~nAaaaL~nLS~ 87 (2102)
T PLN03200 9 DGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR-SGTLGAKVNAAAVLGVLCK 87 (2102)
T ss_pred cchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhc
Confidence 34456789999999987 8899999999999999999999999985 999999999999 9999999999999999999
Q ss_pred cChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC---ccH-HHHHhcCcHHHHHHHhcCCC---HHHHHH
Q 047123 235 ANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDP---ENA-WAISAYGGVSVLIEAFRSGT---ALTQSH 307 (579)
Q Consensus 235 ~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~---~~~-~~i~~~g~i~~Lv~ll~~~~---~~~~~~ 307 (579)
+++++..++..|++++|+.+|++++++.++.|+++|.+|+.+. +++ ..++..|+|+.|+.++++++ ..++..
T Consensus 88 -~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~ 166 (2102)
T PLN03200 88 -EEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGL 166 (2102)
T ss_pred -CHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHH
Confidence 8999999999999999999999999999999999999999764 334 34567999999999999874 346788
Q ss_pred HHHHHHHhhcChhhHH-HHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCC
Q 047123 308 AVGAIRNIAAVEDIKA-ALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSS 386 (579)
Q Consensus 308 a~~aL~nLs~~~~~~~-~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~ 386 (579)
++.+|.||+.+.+++. .+++.|+||.++.+++++++.++..++.+|.+++.+.+..+..+++.|+++.|++++.++++
T Consensus 167 Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~- 245 (2102)
T PLN03200 167 LTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNE- 245 (2102)
T ss_pred HHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCC-
Confidence 8999999999888764 56799999999999999999999999999999998877789999999999999999987653
Q ss_pred hHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCC---------HHHHHHHHHHHHHhcCC-hh-------
Q 047123 387 IVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGN---------VLLQQVSSSLLGNLSIS-DG------- 447 (579)
Q Consensus 387 ~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~---------~~v~~~A~~aL~~L~~~-~~------- 447 (579)
..+++.|+++|+||+.+ +.+..+++. |+++.|++++.+.+ ...+++|.++|.||+.. +.
T Consensus 246 ~~VRE~AA~AL~nLAs~s~e~r~~Iv~a--GgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ 323 (2102)
T PLN03200 246 VSVRAEAAGALEALSSQSKEAKQAIADA--GGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGE 323 (2102)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHC--CCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHH
Confidence 47999999999999997 778889999 99999999997544 34689999999998842 11
Q ss_pred ----hH--H------------------------HHH-------------------------H-----------------H
Q 047123 448 ----NK--R------------------------AVA-------------------------S-----------------C 455 (579)
Q Consensus 448 ----~~--~------------------------~i~-------------------------~-----------------~ 455 (579)
.+ . .+. + .
T Consensus 324 ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~ 403 (2102)
T PLN03200 324 LSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHA 403 (2102)
T ss_pred hhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Confidence 00 0 000 0 0
Q ss_pred --HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhH
Q 047123 456 --MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGC 533 (579)
Q Consensus 456 --v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~ 533 (579)
++.|+.|+ ...+.+++..++.+|++|+..+....+.+.+.++++.|+++|.+++.. .++.++..+.+++...+ +.
T Consensus 404 daik~LV~LL-~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~-iQ~~A~~~L~nLa~~nd-en 480 (2102)
T PLN03200 404 EAKKVLVGLI-TMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQ-QQEYAVALLAILTDEVD-ES 480 (2102)
T ss_pred cchhhhhhhh-ccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHH-HHHHHHHHHHHHHcCCH-HH
Confidence 22344444 344577889999999999988777666776799999999999988766 88999999999986542 37
Q ss_pred HHHHHHcCchHHHHhhhccCCchHH-HHHHHHh
Q 047123 534 RKRLVAAGAYQHLQKLAETEVPGAK-KVLQRLA 565 (579)
Q Consensus 534 r~~i~~~g~~~~L~~L~~~~~~~ak-~~~~~l~ 565 (579)
+..|+++|++++|++|+.++++..+ .++..|+
T Consensus 481 r~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~ 513 (2102)
T PLN03200 481 KWAITAAGGIPPLVQLLETGSQKAKEDSATVLW 513 (2102)
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8899999999999999998876553 4455554
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=5.5e-33 Score=322.80 Aligned_cols=382 Identities=20% Similarity=0.234 Sum_probs=336.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
.++.|+.+|..++.+.+.+++.+|..++.++++.++.+.+.|++|.|+++|. +++...|+.|+++|++|+..+++++..
T Consensus 405 aik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~-s~s~~iQ~~A~~~L~nLa~~ndenr~a 483 (2102)
T PLN03200 405 AKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLG-LSSEQQQEYAVALLAILTDEVDESKWA 483 (2102)
T ss_pred chhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3667899999999999999999999999999999999999999999999999 999999999999999999868889999
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHH-HHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhh
Q 047123 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWA-ISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDI 321 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~-i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~ 321 (579)
+++.|++|+|+++|.+++..+++.|+|+|.||+.++++... +.+.|++++|+++|++++...++.++++|.|++.+.+.
T Consensus 484 IieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~ 563 (2102)
T PLN03200 484 ITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA 563 (2102)
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999987655555 55789999999999999999999999999999875443
Q ss_pred HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh---hHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123 322 KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEY---FRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAIS 398 (579)
Q Consensus 322 ~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~---~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~ 398 (579)
. .++.++.++.+.++.++..++.+|.++....+. ........|+++.|++++++++. ..++.|+++|.
T Consensus 564 ~-------~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~--~ikk~Aa~iLs 634 (2102)
T PLN03200 564 A-------TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKE--ETQEKAASVLA 634 (2102)
T ss_pred h-------HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCH--HHHHHHHHHHH
Confidence 2 447888999999999999999999888542211 22233458999999999999876 89999999999
Q ss_pred Hcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccCCCCHhHH
Q 047123 399 SLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMECPKPVGLQ 472 (579)
Q Consensus 399 ~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~ 472 (579)
+++.+ +.+..++.. |++++++.+|++++.+++..++++|.+++ .+++++..+.+. +++|+++| ++++.++.
T Consensus 635 nL~a~~~d~~~avv~a--gaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL-~~~d~~v~ 711 (2102)
T PLN03200 635 DIFSSRQDLCESLATD--EIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLA-KSSSIEVA 711 (2102)
T ss_pred HHhcCChHHHHHHHHc--CCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHH-hCCChHHH
Confidence 99988 667889999 99999999999999999999999999999 555666676666 99999999 78899999
Q ss_pred HHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChh--HHHHHHHcCchHHHHhhh
Q 047123 473 EAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNG--CRKRLVAAGAYQHLQKLA 550 (579)
Q Consensus 473 ~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~--~r~~i~~~g~~~~L~~L~ 550 (579)
+.|+.+|.|++...+++..+.. .++|++|+++|++++++ .|+.|+++|..|+...+.+ ....+...|.+.+|+.++
T Consensus 712 e~Al~ALanLl~~~e~~~ei~~-~~~I~~Lv~lLr~G~~~-~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L 789 (2102)
T PLN03200 712 EQAVCALANLLSDPEVAAEALA-EDIILPLTRVLREGTLE-GKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLL 789 (2102)
T ss_pred HHHHHHHHHHHcCchHHHHHHh-cCcHHHHHHHHHhCChH-HHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHH
Confidence 9999999999999999888885 78899999999999988 8999999999999877532 346667899999999999
Q ss_pred ccCCchHHH
Q 047123 551 ETEVPGAKK 559 (579)
Q Consensus 551 ~~~~~~ak~ 559 (579)
+..+.+...
T Consensus 790 ~~~~~~~~~ 798 (2102)
T PLN03200 790 NSTDLDSSA 798 (2102)
T ss_pred hcCCcchhh
Confidence 887655443
No 3
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-31 Score=256.91 Aligned_cols=357 Identities=20% Similarity=0.247 Sum_probs=321.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
..++...++++.+...+..|...+++++-.. ++...|++.+++.+|+.-+. .+..++|..++.+|.+|+. .++++..
T Consensus 86 s~epvl~llqs~d~~Iq~aa~~alGnlAVn~-enk~liv~l~Gl~~Li~qmm-td~vevqcnaVgCitnLaT-~d~nk~k 162 (550)
T KOG4224|consen 86 SNEPVLALLQSCDKCIQCAAGEALGNLAVNM-ENKGLIVSLLGLDLLILQMM-TDGVEVQCNAVGCITNLAT-FDSNKVK 162 (550)
T ss_pred hhhHHHHHHhCcchhhhhhhhhhhccceecc-CCceEEEeccChHHHHHHhc-CCCcEEEeeehhhhhhhhc-cccchhh
Confidence 3567788899999999999999999998644 66677788888888887776 7788999999999999999 8999999
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhH
Q 047123 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIK 322 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~ 322 (579)
+...|++.++.++-++.+..+|.++..+|.+++...+++..++..|+++.|+.++++++..+|+.++.++.|++-...+|
T Consensus 163 iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~R 242 (550)
T KOG4224|consen 163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRAR 242 (550)
T ss_pred hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHH
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcC--CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHc
Q 047123 323 AALAEEG--AVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSL 400 (579)
Q Consensus 323 ~~l~~~g--~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L 400 (579)
+.+++.+ .||.|+.++.++++.++-.|..+|.|++.+. .+...+++.|.+|.+++++++... ......+.+++|+
T Consensus 243 k~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~--plilasVaCIrni 319 (550)
T KOG4224|consen 243 KILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMG--PLILASVACIRNI 319 (550)
T ss_pred HHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcch--hHHHHHHHHHhhc
Confidence 9999888 9999999999999999999999999999865 568889999999999999988776 6777888999999
Q ss_pred ccc-hhHHHHHhhcCcHHHHHHHHHhcCCHH-HHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccCCCCHhHHHHH
Q 047123 401 SLS-DSAARILSSTTSFIIQLGEFIKRGNVL-LQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAA 475 (579)
Q Consensus 401 ~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~-v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a 475 (579)
+.. -+...+.+. ||+.+|+.+|+.++.+ +|-.|...|+||+ .++.+++.|.+. ++.++.++ -+.+..+|...
T Consensus 320 sihplNe~lI~da--gfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~-lD~pvsvqsei 396 (550)
T KOG4224|consen 320 SIHPLNEVLIADA--GFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELL-LDGPVSVQSEI 396 (550)
T ss_pred ccccCcccceecc--cchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHH-hcCChhHHHHH
Confidence 998 566678888 9999999999987654 9999999999999 688899999988 99999999 66688999999
Q ss_pred HHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123 476 TDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS 530 (579)
Q Consensus 476 ~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~ 530 (579)
..++.-|+..+..+..+. +.|.++.|+.++.+.+.+ .+..+..+|.+|+++..
T Consensus 397 sac~a~Lal~d~~k~~ll-d~gi~~iLIp~t~s~s~E-v~gNaAaAL~Nlss~v~ 449 (550)
T KOG4224|consen 397 SACIAQLALNDNDKEALL-DSGIIPILIPWTGSESEE-VRGNAAAALINLSSDVE 449 (550)
T ss_pred HHHHHHHHhccccHHHHh-hcCCcceeecccCccchh-hcccHHHHHHhhhhhhH
Confidence 999999988766666665 689999999999998888 78888889999987654
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-29 Score=260.49 Aligned_cols=388 Identities=16% Similarity=0.217 Sum_probs=327.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhccCh-hhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDD-KSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 164 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
....+..+.+++++.+..+..+++.+.+... .....++..|.||.+|.+|....++.+|..|+++|.|++....+..+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 7788899999999999999999999865332 445666777999999999973455999999999999999978888899
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCH-HHHHHHHHHHHHhhcChh
Q 047123 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTA-LTQSHAVGAIRNIAAVED 320 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~nLs~~~~ 320 (579)
+++.|++|.|++++.+++..+++.|.|+|+|++. ++.++..+..+|++.+|+.++...+. ....++.|+|.|+|.+..
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999996 56788888899999999999998776 788999999999998543
Q ss_pred h-HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHH
Q 047123 321 I-KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISS 399 (579)
Q Consensus 321 ~-~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~ 399 (579)
- ...-.-..++|.|..++.+.++.+...++|+|.+|+.+..+.-+.+++.|+++.|+.+|...+. .++..|++++.|
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~--~v~~PaLRaiGN 305 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP--KVVTPALRAIGN 305 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc--ccccHHHhhccc
Confidence 2 1112234588999999999999999999999999998777778899999999999999999887 789999999999
Q ss_pred cccc--hhHHHHHhhcCcHHHHHHHHHh-cCCHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccCCCCHhHHH
Q 047123 400 LSLS--DSAARILSSTTSFIIQLGEFIK-RGNVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMECPKPVGLQE 473 (579)
Q Consensus 400 L~~~--~~~~~l~~~~~g~i~~L~~lL~-~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~ 473 (579)
++.+ ...+.++.. |+++.|..++. +....++.+|++++.|++ .+.+..+++.++ +|.|++++ ...+.++|.
T Consensus 306 IvtG~d~QTq~vi~~--~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l-~~~ef~~rK 382 (514)
T KOG0166|consen 306 IVTGSDEQTQVVINS--GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLL-QTAEFDIRK 382 (514)
T ss_pred eeeccHHHHHHHHhc--ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHH-hccchHHHH
Confidence 9998 556778888 99999999998 555569999999999999 888889998888 99999999 666699999
Q ss_pred HHHHHHHHhhcCCc-chhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHh---CCCC----hhHHHHHHHcCchHH
Q 047123 474 AATDAVLSLLTVRS-NRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVL---GGGS----NGCRKRLVAAGAYQH 545 (579)
Q Consensus 474 ~a~~aL~~L~~~~~-~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~---~~~~----~~~r~~i~~~g~~~~ 545 (579)
.|++|++|++.... +...++-+.|.|+++.++|.-.+..+ ...++-++.++- .... ......|-+.|+...
T Consensus 383 EAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~i-i~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldk 461 (514)
T KOG0166|consen 383 EAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKI-ILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDK 461 (514)
T ss_pred HHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHH-HHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhH
Confidence 99999999986543 44455567899999999997777663 444444444433 2111 336778889999999
Q ss_pred HHhhhccCCchH
Q 047123 546 LQKLAETEVPGA 557 (579)
Q Consensus 546 L~~L~~~~~~~a 557 (579)
+..|-.+++.+.
T Consensus 462 iE~LQ~hen~~I 473 (514)
T KOG0166|consen 462 IENLQSHENEEI 473 (514)
T ss_pred HHHhhccccHHH
Confidence 999999988653
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-30 Score=263.53 Aligned_cols=362 Identities=18% Similarity=0.222 Sum_probs=316.3
Q ss_pred HHHHHHHHHhcc-CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH
Q 047123 162 LFIRDIFTRLQI-GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR 240 (579)
Q Consensus 162 ~~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~ 240 (579)
..|+.+|..|.. .++..+.+|+++|.++++++.+.-+.+++.|+||.++.++. +++..++++|+++|+|++.+.+.+|
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~-s~~~~v~eQavWALgNIagds~~~R 187 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS-SPSADVREQAVWALGNIAGDSPDCR 187 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc-CCcHHHHHHHHHHHhccccCChHHH
Confidence 468999999974 56999999999999999999999999999999999999999 9999999999999999999899999
Q ss_pred HHHHhcCCHHHHHHHHccCCH-HHHHHHHHHHHHhcCCCccHHHHH-hcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 047123 241 KIVFEEGGLGPLLRILETGSM-PLKEKAAIGVEAITTDPENAWAIS-AYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV 318 (579)
Q Consensus 241 ~~i~~~g~l~~Lv~lL~~~~~-~v~~~aa~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~ 318 (579)
..+++.|++++|+.++..... ...+.++|+|.||+........+. -..+++.|..++.+.|+++...|+|+|+.|+..
T Consensus 188 d~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg 267 (514)
T KOG0166|consen 188 DYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG 267 (514)
T ss_pred HHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999998765 788999999999997553222222 256889999999999999999999999999974
Q ss_pred -hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHH
Q 047123 319 -EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAI 397 (579)
Q Consensus 319 -~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL 397 (579)
++.-..+++.|+++.|+.+|...+..++..|+++++|++.+++...+.+++.|+++.|..++..... ..+++.|+++|
T Consensus 268 ~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~-~~ikkEAcW~i 346 (514)
T KOG0166|consen 268 SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPK-ESIKKEACWTI 346 (514)
T ss_pred ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcc-hhHHHHHHHHH
Confidence 4555667799999999999999999999999999999999998888999999999999999985543 36999999999
Q ss_pred HHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccCCCCHhH
Q 047123 398 SSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMECPKPVGL 471 (579)
Q Consensus 398 ~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v 471 (579)
.|++.+ +.++.+++. |+++.|+.+|++++.++|.+|++++.|++ .+++.-.++.+. +++|+.+| .-.+..+
T Consensus 347 SNItAG~~~qiqaVida--~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL-~~~D~~i 423 (514)
T KOG0166|consen 347 SNITAGNQEQIQAVIDA--NLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLL-TCPDVKI 423 (514)
T ss_pred HHhhcCCHHHHHHHHHc--ccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcc-cCCChHH
Confidence 999998 778899999 99999999999999999999999999999 667777788888 99999999 8888888
Q ss_pred HHHHHHHHHHhhcCC--------cchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCC
Q 047123 472 QEAATDAVLSLLTVR--------SNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGG 529 (579)
Q Consensus 472 ~~~a~~aL~~L~~~~--------~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~ 529 (579)
...+..+|.++.... ......+.+.+|+.++-.+=.+.+.+ +.+.|..++-+....+
T Consensus 424 i~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~-Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 424 ILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEE-IYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHH-HHHHHHHHHHHhcCCC
Confidence 999999999996542 23456777889999887766666656 6667777777666544
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=8.5e-31 Score=250.90 Aligned_cols=358 Identities=20% Similarity=0.278 Sum_probs=321.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHH
Q 047123 164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIV 243 (579)
Q Consensus 164 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i 243 (579)
+..|+..+.+++.+++..++.||.+++.- +.++..+...|++.++.+|-+ +.+..+|.++..+|.++.. ..++|+.+
T Consensus 128 l~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLak-skdirvqrnatgaLlnmTh-s~EnRr~L 204 (550)
T KOG4224|consen 128 LDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAK-SKDIRVQRNATGALLNMTH-SRENRRVL 204 (550)
T ss_pred hHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcc-cchhhHHHHHHHHHHHhhh-hhhhhhhh
Confidence 56778888888899999999999999876 678888899999999999888 9999999999999999999 99999999
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcC--cHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhh
Q 047123 244 FEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYG--GVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDI 321 (579)
Q Consensus 244 ~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~ 321 (579)
+.+|++|.|+.++++++.++|++++.++.+++.+..++..+++.+ .++.|+.++.+++++++..|..+|+|++...+.
T Consensus 205 V~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y 284 (550)
T KOG4224|consen 205 VHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY 284 (550)
T ss_pred hccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh
Confidence 999999999999999999999999999999999999999999988 999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcc
Q 047123 322 KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLS 401 (579)
Q Consensus 322 ~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~ 401 (579)
...+++.|.+|.+++++++..-......+.|+.|++..+ .....+++.|.+.+|++++..++. ++.+-+|..+||||+
T Consensus 285 q~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp-lNe~lI~dagfl~pLVrlL~~~dn-EeiqchAvstLrnLA 362 (550)
T KOG4224|consen 285 QREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP-LNEVLIADAGFLRPLVRLLRAGDN-EEIQCHAVSTLRNLA 362 (550)
T ss_pred hhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc-CcccceecccchhHHHHHHhcCCc-hhhhhhHHHHHHHHh
Confidence 999999999999999998887777778889999998865 335677889999999999998876 579999999999999
Q ss_pred cc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHH
Q 047123 402 LS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATD 477 (579)
Q Consensus 402 ~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~ 477 (579)
.. .++..+.++ |+++.+..++..+..++|.....++.-|+.++..+.++.+. ++.|+.++ .+.+.+++.+++.
T Consensus 363 asse~n~~~i~es--gAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t-~s~s~Ev~gNaAa 439 (550)
T KOG4224|consen 363 ASSEHNVSVIRES--GAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWT-GSESEEVRGNAAA 439 (550)
T ss_pred hhhhhhhHHHhhc--CchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeeccc-CccchhhcccHHH
Confidence 85 788899999 99999999999999999999999999999999999999998 99999999 8899999999999
Q ss_pred HHHHhhcCCcchhHHHhh----ccc-HHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123 478 AVLSLLTVRSNRKELVRD----EKS-VMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS 530 (579)
Q Consensus 478 aL~~L~~~~~~~~~~~~~----~~~-i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~ 530 (579)
||.|++...+++.+++.- .+| -..|++.+.+.+.. .+..+.+.+..|..+..
T Consensus 440 AL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~t-f~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 440 ALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELT-FRHIARWTIQQLLEDHD 496 (550)
T ss_pred HHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHhCC
Confidence 999999988887776621 123 35688888776655 66677777777776554
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.97 E-value=2.5e-28 Score=232.17 Aligned_cols=400 Identities=15% Similarity=0.181 Sum_probs=328.2
Q ss_pred hHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc-cChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccC
Q 047123 158 QDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLK-DDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAN 236 (579)
Q Consensus 158 ~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~-~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~ 236 (579)
..+...++.+...|.++|.+.+.+|...++.+.+ ++......+++.|+||.++++++.....-.+-.|+++|.|++...
T Consensus 67 qq~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt 146 (526)
T COG5064 67 QQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT 146 (526)
T ss_pred HHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc
Confidence 3445578999999999999999999999999865 444567888999999999999962555667779999999999966
Q ss_pred hhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCH--HHHHHHHHHHH
Q 047123 237 DESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTA--LTQSHAVGAIR 313 (579)
Q Consensus 237 ~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~--~~~~~a~~aL~ 313 (579)
....+.+++.|++|.++++|.+++.++++.+.|+|.|++. ++.++..+.+.|++.+++.++.+... .+..++.|.|.
T Consensus 147 t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLS 226 (526)
T COG5064 147 TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLS 226 (526)
T ss_pred ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHH
Confidence 6667778899999999999999999999999999999996 45678888899999999999987644 88999999999
Q ss_pred Hhhc--Chh-hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHH
Q 047123 314 NIAA--VED-IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTV 390 (579)
Q Consensus 314 nLs~--~~~-~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~ 390 (579)
||+. +|. .-..+.. ++|.|.+++.+.++++...|+|++..++.+..+.-..+.+.|..+.|+++|.+.+. .++
T Consensus 227 NlcRGknP~P~w~~isq--alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa--~iq 302 (526)
T COG5064 227 NLCRGKNPPPDWSNISQ--ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESA--KIQ 302 (526)
T ss_pred HhhCCCCCCCchHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccc--ccc
Confidence 9998 332 2223333 78999999999999999999999999998877777888999999999999998776 889
Q ss_pred HHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccC
Q 047123 391 ENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMEC 465 (579)
Q Consensus 391 ~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~ 465 (579)
..|.+.+.|+..+ ...+.++.. |+++.+..+|++....++.+|++.+.|++ .+.+..+++.++ +|+|+++| .
T Consensus 303 tPalR~vGNIVTG~D~QTqviI~~--G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~ll-s 379 (526)
T COG5064 303 TPALRSVGNIVTGSDDQTQVIINC--GALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLL-S 379 (526)
T ss_pred CHHHHhhcCeeecCccceehheec--ccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHH-H
Confidence 9999999999998 455678888 99999999999999999999999999999 888888888888 99999999 6
Q ss_pred CCCHhHHHHHHHHHHHhhcCCcchh---HHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhC---------CCCh-h
Q 047123 466 PKPVGLQEAATDAVLSLLTVRSNRK---ELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG---------GGSN-G 532 (579)
Q Consensus 466 ~~~~~v~~~a~~aL~~L~~~~~~~~---~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~---------~~~~-~ 532 (579)
.-...++..||+|+.|.....-++. ++.-+.|.|.+|.++|+-.+.. +-+.++.++-+.-. .+.. .
T Consensus 380 ~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNk-iiev~LD~~eniLk~Ge~d~~~~~~nin~ 458 (526)
T COG5064 380 SAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNK-IIEVALDAIENILKVGEQDRLRYGKNINI 458 (526)
T ss_pred HHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCcc-chhhhHHHHHHHHhhhhHHHHhccCCccH
Confidence 6678889999999999987644432 3334689999999999877665 33444555544332 2221 2
Q ss_pred HHHHHHHcCchHHHHhhhccCCc----hHHHHHHHHh
Q 047123 533 CRKRLVAAGAYQHLQKLAETEVP----GAKKVLQRLA 565 (579)
Q Consensus 533 ~r~~i~~~g~~~~L~~L~~~~~~----~ak~~~~~l~ 565 (579)
....+-++|++..+-.+-.+.+. .|.+++++..
T Consensus 459 ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fF 495 (526)
T COG5064 459 YAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFF 495 (526)
T ss_pred HHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHc
Confidence 33444459999999999888765 3556666554
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.96 E-value=9.8e-28 Score=228.10 Aligned_cols=360 Identities=18% Similarity=0.218 Sum_probs=304.4
Q ss_pred HHHHHHHHhcc-CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123 163 FIRDIFTRLQI-GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK 241 (579)
Q Consensus 163 ~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~ 241 (579)
.|+.++..+.. ...-.+.+|+++|.+++++.....+.+++.|+||.+++||. +++.+++++++++|+|++.+++.+|.
T Consensus 115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~-s~~~~V~eQavWALGNiAGDS~~~RD 193 (526)
T COG5064 115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLS-STEDDVREQAVWALGNIAGDSEGCRD 193 (526)
T ss_pred ccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHc-CchHHHHHHHHHHhccccCCchhHHH
Confidence 58889999954 44445789999999999988888888899999999999999 99999999999999999998999999
Q ss_pred HHHhcCCHHHHHHHHccCC--HHHHHHHHHHHHHhcC--CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 047123 242 IVFEEGGLGPLLRILETGS--MPLKEKAAIGVEAITT--DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA 317 (579)
Q Consensus 242 ~i~~~g~l~~Lv~lL~~~~--~~v~~~aa~~L~~Ls~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~ 317 (579)
.+.+.|++.|++.++.+.. ..+.+++.|+|.||+. +|..-|... ...++.|.+++.+.|+++...|+|++..|+.
T Consensus 194 ~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i-sqalpiL~KLiys~D~evlvDA~WAiSYlsD 272 (526)
T COG5064 194 YVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI-SQALPILAKLIYSRDPEVLVDACWAISYLSD 272 (526)
T ss_pred HHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence 9999999999999999874 4778999999999994 444333332 3467999999999999999999999999998
Q ss_pred Chh-hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHH
Q 047123 318 VED-IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLA 396 (579)
Q Consensus 318 ~~~-~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~a 396 (579)
.+. .-..+.+.|..+.|+.+|.+++..++.-+++.++|+..+++.....+++.|+++.+..+|.+... .++..||+.
T Consensus 273 g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke--~irKEaCWT 350 (526)
T COG5064 273 GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKE--NIRKEACWT 350 (526)
T ss_pred CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhh--hhhhhhhee
Confidence 654 45567799999999999999999999999999999998887777888899999999999887766 899999999
Q ss_pred HHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc----CChhhHHHHHHH--HHHHHHhccCCCC
Q 047123 397 ISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS----ISDGNKRAVASC--MGSLIKLMECPKP 468 (579)
Q Consensus 397 L~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~----~~~~~~~~i~~~--v~~Lv~lL~~~~~ 468 (579)
|.|+..+ +..+.+++. +.++.|+++|...+..++.+|++|+.|.+ .-|+.-+++.+. +.+|..+| +..+
T Consensus 351 iSNITAGnteqiqavid~--nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L-~~~d 427 (526)
T COG5064 351 ISNITAGNTEQIQAVIDA--NLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLL-DVVD 427 (526)
T ss_pred ecccccCCHHHHHHHHhc--ccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHH-hccC
Confidence 9999988 778899999 99999999999999999999999999998 456777777777 99999999 6666
Q ss_pred HhHHHHHHHHHHHhhcCCc-----------chhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123 469 VGLQEAATDAVLSLLTVRS-----------NRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS 530 (579)
Q Consensus 469 ~~v~~~a~~aL~~L~~~~~-----------~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~ 530 (579)
..+.+.+..++.|+....+ ....++.+.||+..+-.+-++.+.+ +-..|-+++-.+...++
T Consensus 428 Nkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~-iy~KAYsIIe~fFgeeD 499 (526)
T COG5064 428 NKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRT-IYDKAYSIIEKFFGEED 499 (526)
T ss_pred ccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccH-HHHHHHHHHHHHcccch
Confidence 7778888888888864322 1345666678888888777777666 45555566666655443
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.92 E-value=9.3e-22 Score=213.12 Aligned_cols=380 Identities=19% Similarity=0.194 Sum_probs=308.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHH
Q 047123 165 RDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVF 244 (579)
Q Consensus 165 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~ 244 (579)
+.+-.+++..+ .....|+..|.+++. ++.....+...|+|+.|+++|+ +++.++...++.+|.+|+. ..+++..|.
T Consensus 253 kk~~~l~~kQe-qLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ld-r~n~ellil~v~fLkkLSi-~~ENK~~m~ 328 (708)
T PF05804_consen 253 KKLQTLIRKQE-QLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLD-RENEELLILAVTFLKKLSI-FKENKDEMA 328 (708)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 33334443333 334467778888885 6688888899999999999999 9999999999999999999 999999999
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHH
Q 047123 245 EEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAA 324 (579)
Q Consensus 245 ~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~ 324 (579)
+.|++++|++++++++.+++..+.++|.||+.+++.+..+++.|.+|.|+.+|.+++ .+..+..+|.++|..++.|..
T Consensus 329 ~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~ 406 (708)
T PF05804_consen 329 ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSM 406 (708)
T ss_pred HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHH
Confidence 999999999999999999999999999999999999999999999999999998654 467799999999999999999
Q ss_pred HHHcCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc
Q 047123 325 LAEEGAVPVLVQSLT-SSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS 403 (579)
Q Consensus 325 l~~~g~v~~Lv~lL~-~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~ 403 (579)
+...+++|.+++++- .+++.+...++..+.|++....+ .+.+.+.|+++.|+.......+ ......++|++.+
T Consensus 407 f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn-aqlm~~g~gL~~L~~ra~~~~D-----~lLlKlIRNiS~h 480 (708)
T PF05804_consen 407 FAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN-AQLMCEGNGLQSLMKRALKTRD-----PLLLKLIRNISQH 480 (708)
T ss_pred HhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH-HHHHHhcCcHHHHHHHHHhccc-----HHHHHHHHHHHhc
Confidence 999999999999874 45566777889999999986644 5778888899999987654433 2244689999998
Q ss_pred h-hHHHHHhhcCcHHHHHHHHHhcC-CHHHHHHHHHHHHHhcC-ChhhHHHHHHH--HHHHHHhccCC-CCHhHHHHHHH
Q 047123 404 D-SAARILSSTTSFIIQLGEFIKRG-NVLLQQVSSSLLGNLSI-SDGNKRAVASC--MGSLIKLMECP-KPVGLQEAATD 477 (579)
Q Consensus 404 ~-~~~~l~~~~~g~i~~L~~lL~~~-~~~v~~~A~~aL~~L~~-~~~~~~~i~~~--v~~Lv~lL~~~-~~~~v~~~a~~ 477 (579)
+ ..+.... +++..|+.++..+ +.+...++.++|.||+. +.+..+.+.+. +|.|.++|..+ ..+++...++.
T Consensus 481 ~~~~k~~f~---~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi 557 (708)
T PF05804_consen 481 DGPLKELFV---DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI 557 (708)
T ss_pred CchHHHHHH---HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence 3 4444433 5888888888664 67888999999999994 44444455444 99999988433 34678888999
Q ss_pred HHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchh-hhhHHHHHHHHHHhCCCChhHHHHHH-HcCchHHHHhhhccCCc
Q 047123 478 AVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEA-LNKKFPVMVTAAVLGGGSNGCRKRLV-AAGAYQHLQKLAETEVP 555 (579)
Q Consensus 478 aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~-~~k~~av~~L~~L~~~~~~~~r~~i~-~~g~~~~L~~L~~~~~~ 555 (579)
.++.++.++.....+. +.|.++.|+++|....++ ...-+.+-++..|..++. .|..|+ +.+++.+|+.|+.+.++
T Consensus 558 ~~gtla~d~~~A~lL~-~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~--tr~~ll~~~~~~~ylidL~~d~N~ 634 (708)
T PF05804_consen 558 LLGTLASDPECAPLLA-KSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEE--TREVLLKETEIPAYLIDLMHDKNA 634 (708)
T ss_pred HHHHHHCCHHHHHHHH-hCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChH--HHHHHHhccchHHHHHHHhcCCCH
Confidence 9999997666666555 588999999999876533 266677788888888877 998887 48999999999999998
Q ss_pred hHHHHHH
Q 047123 556 GAKKVLQ 562 (579)
Q Consensus 556 ~ak~~~~ 562 (579)
..++..+
T Consensus 635 ~ir~~~d 641 (708)
T PF05804_consen 635 EIRKVCD 641 (708)
T ss_pred HHHHHHH
Confidence 8877765
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.92 E-value=8.4e-22 Score=213.44 Aligned_cols=322 Identities=15% Similarity=0.149 Sum_probs=277.8
Q ss_pred HHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHH
Q 047123 224 QAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTAL 303 (579)
Q Consensus 224 ~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 303 (579)
.+...|.|++. ++.....+...|+++.|++.|++++.++...+..+|.+|+...+|+..+.+.|+++.|+.++.+++..
T Consensus 268 v~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~ 346 (708)
T PF05804_consen 268 VAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENED 346 (708)
T ss_pred HHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHH
Confidence 35667999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccC
Q 047123 304 TQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDS 383 (579)
Q Consensus 304 ~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~ 383 (579)
++..++++|.|||.++++|..|++.|++|.|+.++.++ ..+..++.+|.+++..+ ..|..+...++++.+++++..+
T Consensus 347 l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~ 423 (708)
T PF05804_consen 347 LVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLEN 423 (708)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHhC
Confidence 99999999999999999999999999999999999764 45677999999999965 5688999899999999987776
Q ss_pred CCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHH
Q 047123 384 TSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISD-GNKRAVASCMGSLIK 461 (579)
Q Consensus 384 ~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~-~~~~~i~~~v~~Lv~ 461 (579)
+. ..+...++..+.||+.. .+.+.+.+. |+++.|+...-..... ...+.++|++.++ ..+..|.+.+..|++
T Consensus 424 ~~-~~v~~eliaL~iNLa~~~rnaqlm~~g--~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k~~f~~~i~~L~~ 497 (708)
T PF05804_consen 424 SE-EEVQLELIALLINLALNKRNAQLMCEG--NGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLKELFVDFIGDLAK 497 (708)
T ss_pred CC-ccccHHHHHHHHHHhcCHHHHHHHHhc--CcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 54 35677789999999998 777778877 8889888876444332 2346899999555 677777777999999
Q ss_pred hccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchh-hhhHHHHHHHHHHhCCCChhHHHHHHHc
Q 047123 462 LMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEA-LNKKFPVMVTAAVLGGGSNGCRKRLVAA 540 (579)
Q Consensus 462 lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~-~~k~~av~~L~~L~~~~~~~~r~~i~~~ 540 (579)
++...++.+....+.++|.||...+.+...++++.+.++.|.++|.++..+ .....++.++..++.++. |...+.+.
T Consensus 498 ~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~--~A~lL~~s 575 (708)
T PF05804_consen 498 IVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPE--CAPLLAKS 575 (708)
T ss_pred HhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHH--HHHHHHhC
Confidence 886777889999999999999988778888888788999999999877433 255667777888888877 99999999
Q ss_pred CchHHHHhhhccCCchH
Q 047123 541 GAYQHLQKLAETEVPGA 557 (579)
Q Consensus 541 g~~~~L~~L~~~~~~~a 557 (579)
|.++.|+.|+....++-
T Consensus 576 gli~~Li~LL~~kqeDd 592 (708)
T PF05804_consen 576 GLIPTLIELLNAKQEDD 592 (708)
T ss_pred ChHHHHHHHHHhhCchH
Confidence 99999999998876553
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.85 E-value=4.3e-19 Score=187.96 Aligned_cols=375 Identities=17% Similarity=0.204 Sum_probs=292.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccCh--hh
Q 047123 162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAND--ES 239 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~--~~ 239 (579)
..+++-+.+|.+.++..+..|...|..+|..+.+.+..+.+.|+|+.||.+|+ +...++|.+|+.+|.||..... ++
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~-~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLD-HRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhc-CCcHHHHHHHHHHHHhhhcccCCccc
Confidence 36789999999999999999999999999999999999999999999999999 9999999999999999997544 48
Q ss_pred HHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcC--------------CCHHH
Q 047123 240 RKIVFEEGGLGPLLRILET-GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRS--------------GTALT 304 (579)
Q Consensus 240 ~~~i~~~g~l~~Lv~lL~~-~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~--------------~~~~~ 304 (579)
+-.|.+.++++.++++|+. .+.++++.++.+|+||++++..+..++.. .+..|..-+-. .+..+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCccccccccee
Confidence 8999999999999999997 79999999999999999997776666554 44555553321 12467
Q ss_pred HHHHHHHHHHhhc-ChhhHHHHHH-cCCHHHHHHHhc------CCCHHHHHHHHHHHHHHhcCCh-----hhHHHH----
Q 047123 305 QSHAVGAIRNIAA-VEDIKAALAE-EGAVPVLVQSLT------SSSNLAQENAADCIATLAASGE-----YFRLLI---- 367 (579)
Q Consensus 305 ~~~a~~aL~nLs~-~~~~~~~l~~-~g~v~~Lv~lL~------~~~~~v~~~a~~~L~~La~~~~-----~~r~~l---- 367 (579)
..++.+||+|++. ..+.|++|.+ .|.|..|+..++ ..+....++++..|.|+...-+ ..+..+
T Consensus 391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~ 470 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIA 470 (717)
T ss_pred eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccc
Confidence 8899999999988 7888999984 689999988875 2355788999999999863211 111110
Q ss_pred --------------------------------------------HhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc
Q 047123 368 --------------------------------------------IQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS 403 (579)
Q Consensus 368 --------------------------------------------~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~ 403 (579)
...-++..-+.++. .+.+..+.+.++++|-||+.+
T Consensus 471 ~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~-~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 471 RLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLA-LSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred ccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHH-HhcchHHHHHhhhhHhhhhcc
Confidence 00112233333444 222358999999999999987
Q ss_pred ------hhHHHH-HhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCCCC-----Hh
Q 047123 404 ------DSAARI-LSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECPKP-----VG 470 (579)
Q Consensus 404 ------~~~~~l-~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~-----~~ 470 (579)
..+..+ ... .+++.++++|+.++..+...++.+|.||+.+..++..|+.. ++.|++.|..+.+ .+
T Consensus 550 ~~~~~~~~~~~v~~ke--kgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sed 627 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKE--KGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSED 627 (717)
T ss_pred CCcchhHHHhhhhhhc--cCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHH
Confidence 223333 444 78999999999999999999999999999999999999977 9999999954444 78
Q ss_pred HHHHHHHHHHHhhcCC-cchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchH
Q 047123 471 LQEAATDAVLSLLTVR-SNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQ 544 (579)
Q Consensus 471 v~~~a~~aL~~L~~~~-~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~ 544 (579)
+...++..|+++...+ .+.+.+. +.+|+++|+-+..+...+-.-++|-.+|..|=..+. .|..+...|+-+
T Consensus 628 tv~~vc~tl~niv~~~~~nAkdl~-~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e--Lh~~~kk~g~~q 699 (717)
T KOG1048|consen 628 TVRAVCHTLNNIVRKNVLNAKDLL-EIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE--LHFKLKKKGFKQ 699 (717)
T ss_pred HHHHHHHhHHHHHHHhHHHHHHHH-hccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH--HhhhHhhhhhHH
Confidence 8889999999999654 4555555 699999999999875543356677777777765554 555555555443
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.84 E-value=1e-18 Score=185.16 Aligned_cols=362 Identities=18% Similarity=0.208 Sum_probs=281.5
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC---CCccHH
Q 047123 206 VGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT---DPENAW 282 (579)
Q Consensus 206 v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~---~~~~~~ 282 (579)
+|..+.+|. +.++.+|-+|+..+..+|..+.+.+..+.+.|+|+.|+.+|++.+.+++..||++|.||.. +.+|+.
T Consensus 235 lpe~i~mL~-~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 235 LPEVISMLM-SQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred cHHHHHHHh-ccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 677888898 9999999999999999999888899999999999999999999999999999999999994 336999
Q ss_pred HHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhc---C-------C----CHHHHH
Q 047123 283 AISAYGGVSVLIEAFRS-GTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLT---S-------S----SNLAQE 347 (579)
Q Consensus 283 ~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~---~-------~----~~~v~~ 347 (579)
+|.+.++|+.++.+++. .|.++++.+.++|+||++++..+..++.. ++..|..-+- + . +..+-.
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~ 392 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR 392 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeee
Confidence 99999999999999996 78899999999999999998888887753 4555444431 1 1 246888
Q ss_pred HHHHHHHHHhcCChhhHHHHHh-cCcHHHHHHhhcc----CCCChHHHHHHHHHHHHcccc-h----hH-----------
Q 047123 348 NAADCIATLAASGEYFRLLIIQ-ERGLQRLMHLIQD----STSSIVTVENALLAISSLSLS-D----SA----------- 406 (579)
Q Consensus 348 ~a~~~L~~La~~~~~~r~~l~~-~g~i~~Lv~ll~~----~~~~~~~~~~A~~aL~~L~~~-~----~~----------- 406 (579)
++.+||.|++......|+.+.+ .|.|+.|+.+++. +..+.+..++++..++||+.. + ..
T Consensus 393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~ 472 (717)
T KOG1048|consen 393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL 472 (717)
T ss_pred hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence 9999999999977788999998 8889999988762 223358899999999999875 1 00
Q ss_pred -----------------HHHHh------------h--------cCcHHHHHHHHH-hcCCHHHHHHHHHHHHHhc-C---
Q 047123 407 -----------------ARILS------------S--------TTSFIIQLGEFI-KRGNVLLQQVSSSLLGNLS-I--- 444 (579)
Q Consensus 407 -----------------~~l~~------------~--------~~g~i~~L~~lL-~~~~~~v~~~A~~aL~~L~-~--- 444 (579)
+.... . ++.++...+.+| .+.++.+.+.++.+|.||+ .
T Consensus 473 ~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~ 552 (717)
T KOG1048|consen 473 PGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT 552 (717)
T ss_pred ccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc
Confidence 00000 0 123444444444 4557789999999999999 2
Q ss_pred -ChhhHHHHHHH---HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCch-----hhhh
Q 047123 445 -SDGNKRAVASC---MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNE-----ALNK 515 (579)
Q Consensus 445 -~~~~~~~i~~~---v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~-----~~~k 515 (579)
....+..+... .+.|+++| ..++..+...++.+|.||+.+..|+..+. ..+++.|++.|....+ +...
T Consensus 553 ~~~~~~~~v~~kekgl~~l~~ll-~~~~~~vv~s~a~~LrNls~d~rnk~lig--k~a~~~lv~~Lp~~~~~~~~sedtv 629 (717)
T KOG1048|consen 553 WSEYMRGAVFRKEKGLPPLVELL-RNDDSDVVRSAAGALRNLSRDIRNKELIG--KYAIPDLVRCLPGSGPSTSLSEDTV 629 (717)
T ss_pred chhHHHhhhhhhccCccHHHHHH-hcCCchHHHHHHHHHhhhccCchhhhhhh--cchHHHHHHhCcCCCCCcCchHHHH
Confidence 23455555333 99999999 77789999999999999999988888776 7899999999987765 2133
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhccCCc-----hHHHHHHHHh-cCcchhhh
Q 047123 516 KFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVP-----GAKKVLQRLA-GNRLKNIF 573 (579)
Q Consensus 516 ~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~~-----~ak~~~~~l~-~~~~~~~~ 573 (579)
..++..|.++.... ..+.+.+.+.++++.|+-+..+... -+..++.-|+ ..+|+..|
T Consensus 630 ~~vc~tl~niv~~~-~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh~~~ 692 (717)
T KOG1048|consen 630 RAVCHTLNNIVRKN-VLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELHFKL 692 (717)
T ss_pred HHHHHhHHHHHHHh-HHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 44455566665433 3478999999999999999877422 1334455565 66666666
No 13
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.80 E-value=7.4e-18 Score=184.86 Aligned_cols=355 Identities=17% Similarity=0.206 Sum_probs=276.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCC---CHHHHHHHHHHHHHhhccChhhHH
Q 047123 165 RDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHH---QSSIREQAVLALSIIVSANDESRK 241 (579)
Q Consensus 165 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~---~~~~~~~A~~aL~~La~~~~~~~~ 241 (579)
-.++.+|.+.|.+.. .+.+..+. .+++....+...|+++.|+++|. .+ +.+.+..|-.+|.||..++++.+.
T Consensus 200 ~sllsml~t~D~ee~---ar~fLemS-ss~esCaamR~SgCLpLLvQilH-~~d~~~kear~~A~aALHNIVhSqPD~kr 274 (2195)
T KOG2122|consen 200 NSLLSMLGTDDEEEM---ARTFLEMS-SSPESCAAMRRSGCLPLLVQILH-GPDDEDKEARKRASAALHNIVHSQPDEKR 274 (2195)
T ss_pred hHHhhhcccCCHHHH---HHHHHHhc-cCchhhHHHHhccchHHHHHHhh-CCchhhHHHHHHHHHHHHHHhhcCcchhh
Confidence 356677777776644 44444444 46778888899999999999997 44 367888999999999986665543
Q ss_pred HHHhcCCHHHHH----------HHHccC-------CHHHH-HHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcC----
Q 047123 242 IVFEEGGLGPLL----------RILETG-------SMPLK-EKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRS---- 299 (579)
Q Consensus 242 ~i~~~g~l~~Lv----------~lL~~~-------~~~v~-~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~---- 299 (579)
.=.+..++..|= .++..+ +.+-+ ..|..+|.++++++|.+..+.+.|++.++-+++.-
T Consensus 275 ~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~m 354 (2195)
T KOG2122|consen 275 GRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEM 354 (2195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 333333333322 222222 12223 36777899999999999999999999999998762
Q ss_pred -C-------CHHHHHHHHHHHHHhhc-ChhhHHHHH-HcCCHHHHHHHhcCCCHHHHHHHHHHHHHHh-cCChhhHHHHH
Q 047123 300 -G-------TALTQSHAVGAIRNIAA-VEDIKAALA-EEGAVPVLVQSLTSSSNLAQENAADCIATLA-ASGEYFRLLII 368 (579)
Q Consensus 300 -~-------~~~~~~~a~~aL~nLs~-~~~~~~~l~-~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La-~~~~~~r~~l~ 368 (579)
+ ...++.++..+|.||+. +..|+..++ ..|+|+.+|..|.+..+++....+.+|.||+ ..|.+.+..+.
T Consensus 355 hgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLr 434 (2195)
T KOG2122|consen 355 HGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLR 434 (2195)
T ss_pred cCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHH
Confidence 1 12689999999999998 455677777 7899999999999999899999999999998 45556788888
Q ss_pred hcCcHHHHHHh-hccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcC----CHHHHHHHHHHHHH
Q 047123 369 QERGLQRLMHL-IQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRG----NVLLQQVSSSLLGN 441 (579)
Q Consensus 369 ~~g~i~~Lv~l-l~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~----~~~v~~~A~~aL~~ 441 (579)
+.|.+-.|... +..... ......+.|||||+.+ ++...|..- .|++..|+.+|.-. ...+.+.+-.+|+|
T Consensus 435 E~GsVtaLa~~al~~~kE--sTLKavLSALWNLSAHcteNKA~iCaV-DGALaFLVg~LSY~~qs~tLaIIEsaGGILRN 511 (2195)
T KOG2122|consen 435 ETGSVTALAACALRNKKE--STLKAVLSALWNLSAHCTENKAEICAV-DGALAFLVGTLSYEGQSNTLAIIESAGGILRN 511 (2195)
T ss_pred hhhhHHHHHHHHHHhccc--chHHHHHHHHhhhhhcccccchhhhcc-cchHHHHHhhccccCCcchhhhhhcCccHHHH
Confidence 89999988885 555554 5778899999999988 555544332 38999999999543 45778999999999
Q ss_pred hc----CChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhh
Q 047123 442 LS----ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNK 515 (579)
Q Consensus 442 L~----~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k 515 (579)
.+ ..++.|+.+.+. +..|+..| ++.+..+.-++|++||||+..++.-++++++.+.++.|..++++.+.. +.
T Consensus 512 VSS~IAt~E~yRQILR~~NCLq~LLQ~L-KS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkM-Ia 589 (2195)
T KOG2122|consen 512 VSSLIATCEDYRQILRRHNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKM-IA 589 (2195)
T ss_pred HHhHhhccchHHHHHHHhhHHHHHHHHh-hhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhh-hh
Confidence 88 567788888887 99999999 899999999999999999988888889999999999999999988876 66
Q ss_pred HHHHHHHHHHhCCC
Q 047123 516 KFPVMVTAAVLGGG 529 (579)
Q Consensus 516 ~~av~~L~~L~~~~ 529 (579)
+-++++|.+|....
T Consensus 590 ~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 590 MGSAAALRNLLNFR 603 (2195)
T ss_pred hhHHHHHHHHhcCC
Confidence 67777788887665
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=1.1e-16 Score=153.06 Aligned_cols=315 Identities=18% Similarity=0.210 Sum_probs=266.0
Q ss_pred hccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhc-cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCH
Q 047123 171 LQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLD-FHHQSSIREQAVLALSIIVSANDESRKIVFEEGGL 249 (579)
Q Consensus 171 L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~-~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l 249 (579)
-.+++.....+++.+|..+....|+. .+..+...++.+|. ...+.++-....+.+..-|..++.+|+.+++.+++
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qpdl----~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQPDL----FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCcch----hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 45677788889999999988766654 45677889999886 23457777788888888887689999999999999
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHHHhcCCCcc----------HHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhc
Q 047123 250 GPLLRILETG-SMPLKEKAAIGVEAITTDPEN----------AWAISAYGGVSVLIEAFRSG-TALTQSHAVGAIRNIAA 317 (579)
Q Consensus 250 ~~Lv~lL~~~-~~~v~~~aa~~L~~Ls~~~~~----------~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLs~ 317 (579)
+.+.+.|... ...+.+..+++++.|..+++. ...|++.|++..|++.++.+ ++.+....+.+|..|+.
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 9999777654 445778899999999876653 45678888999999999864 78889999999999999
Q ss_pred ChhhHHHHHHcCCHHHHHHHhcCC-CHH---HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHH
Q 047123 318 VEDIKAALAEEGAVPVLVQSLTSS-SNL---AQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENA 393 (579)
Q Consensus 318 ~~~~~~~l~~~g~v~~Lv~lL~~~-~~~---v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A 393 (579)
.++.+..+.+.|++..+++++.+. ... ....++..|..++..| +.+..+++.|+.+.++.++..+.+++.+.+.+
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~D-svKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~ 350 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSD-SVKSTIVEKGGLDKIITLALRHSDDPLVIQEV 350 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCC-chHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence 999999999999999999999764 333 5567888888898876 56999999999999999998887778999999
Q ss_pred HHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCC--HHHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCC
Q 047123 394 LLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGN--VLLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPK 467 (579)
Q Consensus 394 ~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~--~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~ 467 (579)
+.++.-||-. +....+++. |+-...++.++... ..+|.+|+++++|+. .+.++++.+... ++.|++.- .+.
T Consensus 351 ~a~i~~l~LR~pdhsa~~ie~--G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A-~~~ 427 (461)
T KOG4199|consen 351 MAIISILCLRSPDHSAKAIEA--GAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTA-KAN 427 (461)
T ss_pred HHHHHHHHhcCcchHHHHHhc--chHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHH-Hhc
Confidence 9999999987 778889999 99999999997654 478999999999999 888999988888 99999999 788
Q ss_pred CHhHHHHHHHHHHHhhcCCcchhHHH
Q 047123 468 PVGLQEAATDAVLSLLTVRSNRKELV 493 (579)
Q Consensus 468 ~~~v~~~a~~aL~~L~~~~~~~~~~~ 493 (579)
+..++..+..||..|..+..++....
T Consensus 428 h~tce~~akaALRDLGc~v~lre~wt 453 (461)
T KOG4199|consen 428 HETCEAAAKAALRDLGCDVYLREEWT 453 (461)
T ss_pred CccHHHHHHHHHHhcCcchhhHHHhc
Confidence 89999999999999998877766543
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=1.8e-16 Score=151.59 Aligned_cols=282 Identities=13% Similarity=0.170 Sum_probs=241.3
Q ss_pred HHHHHh--ccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChh-----
Q 047123 166 DIFTRL--QIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDE----- 238 (579)
Q Consensus 166 ~Lv~~L--~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~----- 238 (579)
-++.+| +.++.+.-...+.++..-|-.++.+++.+++.+..+.+.+.|...+..++.....++++.|.. +++
T Consensus 149 vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~-dDDiRV~f 227 (461)
T KOG4199|consen 149 VVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLT-DDDIRVVF 227 (461)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcC-CCceeeec
Confidence 344444 355677778889999999999999999999999999999866635666677778888998887 443
Q ss_pred -----hHHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCC-CHH---HHHHH
Q 047123 239 -----SRKIVFEEGGLGPLLRILETG-SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSG-TAL---TQSHA 308 (579)
Q Consensus 239 -----~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~---~~~~a 308 (579)
+...|+.+|++..|++.++.+ ++++....+.+|..|+..++.+..|.+.||+..|+.++.+. +.. ....+
T Consensus 228 g~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~ 307 (461)
T KOG4199|consen 228 GQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTC 307 (461)
T ss_pred chhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHH
Confidence 346788999999999999986 78889999999999999999999999999999999999873 333 45677
Q ss_pred HHHHHHhhcChhhHHHHHHcCCHHHHHHHh--cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCC
Q 047123 309 VGAIRNIAAVEDIKAALAEEGAVPVLVQSL--TSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSS 386 (579)
Q Consensus 309 ~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL--~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~ 386 (579)
+..|+.|+.++.++..+++.|+.+.++.++ .+.+|.+...++.++.-+|-..++....+++.|+-...++.++.+...
T Consensus 308 lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~ 387 (461)
T KOG4199|consen 308 LSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVA 387 (461)
T ss_pred HHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHH
Confidence 788899999999999999999999999997 567899999999999999988888888999999999999999998866
Q ss_pred hHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHH
Q 047123 387 IVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRA 451 (579)
Q Consensus 387 ~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~ 451 (579)
..++.+|+.+|+|+... +++..++.. +++.|+..-+..++.+...|..+|+.|..+.++|+.
T Consensus 388 a~vQrnac~~IRNiv~rs~~~~~~~l~~---GiE~Li~~A~~~h~tce~~akaALRDLGc~v~lre~ 451 (461)
T KOG4199|consen 388 AQVQRNACNMIRNIVVRSAENRTILLAN---GIEKLIRTAKANHETCEAAAKAALRDLGCDVYLREE 451 (461)
T ss_pred HHHHHHHHHHHHHHHHhhhhccchHHhc---cHHHHHHHHHhcCccHHHHHHHHHHhcCcchhhHHH
Confidence 79999999999999987 666666664 888999999999999999999999999977776653
No 16
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.72 E-value=5.6e-14 Score=151.13 Aligned_cols=372 Identities=16% Similarity=0.189 Sum_probs=287.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhc
Q 047123 167 IFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEE 246 (579)
Q Consensus 167 Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~ 246 (579)
++..|++.+.+....++..|..+....+ ...+ ..+..+.|...|. ++++.+|..++..|.++...++.....+.+.
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~--~~~l-~~~~~~~L~~gL~-h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALS--PDSL-LPQYQPFLQRGLT-HPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccC--HHHH-HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 7888888888888888888888875332 1121 5677899999999 9999999999999999998455557777888
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChhhHHHH
Q 047123 247 GGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VEDIKAAL 325 (579)
Q Consensus 247 g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~~~~~l 325 (579)
+.++.++..+.+++..+...|+.+|.+|+.++.....+...+.+..|..++...+..++..+..++.+++. +++....+
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999999988888888888889999999988788889999999999987 66777778
Q ss_pred HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCCh---HHH-HHHHHHHHHcc
Q 047123 326 AEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSI---VTV-ENALLAISSLS 401 (579)
Q Consensus 326 ~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~---~~~-~~A~~aL~~L~ 401 (579)
.+.|.++.++..+.++|.-++..++.+|..|+. .+.....+.+.|+++.|..++.....++ .+. -.......+++
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la 277 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA 277 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH
Confidence 889999999999999888999999999999999 4466888999999999999997765422 111 12234555555
Q ss_pred cchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHH-HHH---HHHH----HHhccCCCCHhHHH
Q 047123 402 LSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAV-ASC---MGSL----IKLMECPKPVGLQE 473 (579)
Q Consensus 402 ~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i-~~~---v~~L----v~lL~~~~~~~v~~ 473 (579)
.. ....+...-+.++..+..++.+.++..+..|..+++.++.+.+.+..+ ... ++.. -... .....++|.
T Consensus 278 ~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~-~~~~~~lk~ 355 (503)
T PF10508_consen 278 RV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAI-KSGSTELKL 355 (503)
T ss_pred hc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHh-cCCchHHHH
Confidence 53 111222222257778888899999999999999999999888888877 222 3333 3344 445678999
Q ss_pred HHHHHHHHhhcCCcc---------hhHHHh--hcccHH-HHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHH-c
Q 047123 474 AATDAVLSLLTVRSN---------RKELVR--DEKSVM-RLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVA-A 540 (579)
Q Consensus 474 ~a~~aL~~L~~~~~~---------~~~~~~--~~~~i~-~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~-~ 540 (579)
.+..+|.++...... .+.... ..+... .++.++..+-++ .+..+..++..++..+- +.+.|.+ .
T Consensus 356 r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~e-lr~a~~~~l~~l~~~~W--g~~~i~~~~ 432 (503)
T PF10508_consen 356 RALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPE-LRCAAYRLLQALAAQPW--GQREICSSP 432 (503)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchH-HHHHHHHHHHHHhcCHH--HHHHHHhCc
Confidence 999999999544332 111111 123334 678888877777 89999999999999875 6666664 6
Q ss_pred CchHHHHh
Q 047123 541 GAYQHLQK 548 (579)
Q Consensus 541 g~~~~L~~ 548 (579)
|.+.+|.+
T Consensus 433 gfie~lld 440 (503)
T PF10508_consen 433 GFIEYLLD 440 (503)
T ss_pred cHHhhhcC
Confidence 66666653
No 17
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.72 E-value=1e-15 Score=168.41 Aligned_cols=319 Identities=17% Similarity=0.174 Sum_probs=255.3
Q ss_pred HHHHHHHHhccC---CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHH----------HhhccCC-------CHHHH
Q 047123 163 FIRDIFTRLQIG---GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLI----------SLLDFHH-------QSSIR 222 (579)
Q Consensus 163 ~v~~Lv~~L~~~---~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv----------~LL~~~~-------~~~~~ 222 (579)
-++.|+.+|+.. +.+.|..|-.+|-++.-..++....=.+..+++.|= ..+. .. ..+=+
T Consensus 236 CLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lq-ar~~~~apa~~~H~ 314 (2195)
T KOG2122|consen 236 CLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQ-ARGPAIAPASDEHQ 314 (2195)
T ss_pred chHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCcccchh
Confidence 367888888754 457788899999999765554322222222222222 1222 11 12233
Q ss_pred H-HHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccC------------CHHHHHHHHHHHHHhcCC-CccHHHHHh-c
Q 047123 223 E-QAVLALSIIVSANDESRKIVFEEGGLGPLLRILETG------------SMPLKEKAAIGVEAITTD-PENAWAISA-Y 287 (579)
Q Consensus 223 ~-~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~------------~~~v~~~aa~~L~~Ls~~-~~~~~~i~~-~ 287 (579)
. .|+.+|..+++ ++++|+.|-+-|++..+-.++.-. ...++.++..+|.||++. ..|+..++. .
T Consensus 315 lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~r 393 (2195)
T KOG2122|consen 315 LCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQR 393 (2195)
T ss_pred hHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhh
Confidence 3 57777889999 999999999999999988877431 346899999999999974 457777765 7
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--hhhHHHHHHcCCHHHHHHH-hcCCCHHHHHHHHHHHHHHhcCChhhH
Q 047123 288 GGVSVLIEAFRSGTALTQSHAVGAIRNIAAV--EDIKAALAEEGAVPVLVQS-LTSSSNLAQENAADCIATLAASGEYFR 364 (579)
Q Consensus 288 g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~--~~~~~~l~~~g~v~~Lv~l-L~~~~~~v~~~a~~~L~~La~~~~~~r 364 (579)
|.++.+|..|.+...++....+.+|+||++. ...+..+.+.|-|-.|+.+ +....+.....++.+||||+.+...++
T Consensus 394 gfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNK 473 (2195)
T KOG2122|consen 394 GFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENK 473 (2195)
T ss_pred hHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccc
Confidence 8999999999998889999999999999984 3456677789999998887 566677788999999999998777778
Q ss_pred HHHHh-cCcHHHHHHhhccCC--CChHHHHHHHHHHHHcccc-----hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHH
Q 047123 365 LLIIQ-ERGLQRLMHLIQDST--SSIVTVENALLAISSLSLS-----DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSS 436 (579)
Q Consensus 365 ~~l~~-~g~i~~Lv~ll~~~~--~~~~~~~~A~~aL~~L~~~-----~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~ 436 (579)
..|.. .|++..|+.+|.... ..-.+.+.|-++|+|.+.. +.++.+... ..+..|++.|++.+-.+..+++
T Consensus 474 A~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~--NCLq~LLQ~LKS~SLTiVSNaC 551 (2195)
T KOG2122|consen 474 AEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRH--NCLQTLLQHLKSHSLTIVSNAC 551 (2195)
T ss_pred hhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHh--hHHHHHHHHhhhcceEEeecch
Confidence 88877 899999999997652 2237889999999999886 556677788 9999999999999999999999
Q ss_pred HHHHHhc-CChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCC
Q 047123 437 SLLGNLS-ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVR 486 (579)
Q Consensus 437 ~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~ 486 (579)
.+||||+ .+++.++++++. |+.|..++ ++++..+-+.++.+|.||....
T Consensus 552 GTLWNLSAR~p~DQq~LwD~gAv~mLrnLI-hSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 552 GTLWNLSARSPEDQQMLWDDGAVPMLRNLI-HSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhhcCCHHHHHHHHhcccHHHHHHHH-hhhhhhhhhhHHHHHHHHhcCC
Confidence 9999999 999999999998 99999999 9999999999999999998765
No 18
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.70 E-value=1.2e-13 Score=148.55 Aligned_cols=339 Identities=17% Similarity=0.188 Sum_probs=266.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh
Q 047123 160 LVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDES 239 (579)
Q Consensus 160 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~ 239 (579)
...+.+.+...|++.++.+|..++..|..+..+++.....+.+.+.++.++..+. +++..+...|+.+|..++. ++..
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~-~~d~~Va~~A~~~L~~l~~-~~~~ 152 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLR-DPDLSVAKAAIKALKKLAS-HPEG 152 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHc-CCcHHHHHHHHHHHHHHhC-Cchh
Confidence 3456788899999999999999999999999888887888889999999999999 9999999999999999999 8888
Q ss_pred HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 047123 240 RKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV 318 (579)
Q Consensus 240 ~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~ 318 (579)
.+.++..+.+..|..++...+..+|..+..++.+++. +++....+...|.++.++..+.++|.-+|.+++.+|..|+..
T Consensus 153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~ 232 (503)
T PF10508_consen 153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET 232 (503)
T ss_pred HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC
Confidence 8889899999999999999888999999999999984 667788888899999999999999999999999999999999
Q ss_pred hhhHHHHHHcCCHHHHHHHhcCC--CH---H-HHHHHHHHHHHHhcCChhhHHHHHh-cCcHHHHHHhhccCCCChHHHH
Q 047123 319 EDIKAALAEEGAVPVLVQSLTSS--SN---L-AQENAADCIATLAASGEYFRLLIIQ-ERGLQRLMHLIQDSTSSIVTVE 391 (579)
Q Consensus 319 ~~~~~~l~~~g~v~~Lv~lL~~~--~~---~-v~~~a~~~L~~La~~~~~~r~~l~~-~g~i~~Lv~ll~~~~~~~~~~~ 391 (579)
+.+...+.+.|+++.|..++.+. ++ . .....+...++++..++. ..+.. ...+..+.+++.+.+. ..+.
T Consensus 233 ~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~--~v~~~~p~~~~~l~~~~~s~d~--~~~~ 308 (503)
T PF10508_consen 233 PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ--EVLELYPAFLERLFSMLESQDP--TIRE 308 (503)
T ss_pred hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHhCCCCh--hHHH
Confidence 99999999999999999999543 22 1 333444667777764322 11111 3345556666666665 7899
Q ss_pred HHHHHHHHcccc-hhHHHHHhhcCcH----HHHHHHHHhcCCHHHHHHHHHHHHHhc--CCh---h----hHHHHHHH--
Q 047123 392 NALLAISSLSLS-DSAARILSSTTSF----IIQLGEFIKRGNVLLQQVSSSLLGNLS--ISD---G----NKRAVASC-- 455 (579)
Q Consensus 392 ~A~~aL~~L~~~-~~~~~l~~~~~g~----i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~---~----~~~~i~~~-- 455 (579)
.|..++..++.. +....+.....+. +..+.....++..++|..+..++.++- ..+ + ..+...+.
T Consensus 309 ~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~ 388 (503)
T PF10508_consen 309 VAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLS 388 (503)
T ss_pred HHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhc
Confidence 999999999988 4444441322233 444555567788899999999999994 222 1 12222222
Q ss_pred ---HH-HHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhh
Q 047123 456 ---MG-SLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQM 505 (579)
Q Consensus 456 ---v~-~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~l 505 (579)
.. .++.++ +.+-+++|.++...|..|+..+...+.+....|.+..|++-
T Consensus 389 ~~~~~~~l~~~~-~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr 441 (503)
T PF10508_consen 389 GSPLSNLLMSLL-KQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDR 441 (503)
T ss_pred CCchHHHHHHHh-cCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCC
Confidence 44 778888 66679999999999999999988888887655555555443
No 19
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.63 E-value=1.8e-13 Score=135.17 Aligned_cols=345 Identities=15% Similarity=0.116 Sum_probs=256.0
Q ss_pred CHHHHHHHHHHHHHHhccChhh----HHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHH
Q 047123 175 GVEFKKKALESLLQLLKDDDKS----AAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLG 250 (579)
Q Consensus 175 ~~~~~~~Al~~L~~l~~~~~~~----~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~ 250 (579)
+..++..+..|+...++ ++.. ++.-+..+++..|.+... +++.++.++..++|+|+|.++.++|..+.+.||-.
T Consensus 55 ~~tv~~~qssC~A~~sk-~ev~r~~F~~~~I~a~~le~Lrq~ps-S~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq 132 (604)
T KOG4500|consen 55 SDTVYLFQSSCLADRSK-NEVERSLFRNYCIDAEALELLRQTPS-SPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQ 132 (604)
T ss_pred cchhhhhhHHHHHHHhh-hHHHHHHHHHHhhHHHHHHHHHhCCC-CCcccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence 44455666667777764 3322 333356788999999999 99999999999999999999999999999999988
Q ss_pred HHHHHHccC-------CHHHHHHHHHHHHHhc-CCCccHHHHHhcCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcC-h
Q 047123 251 PLLRILETG-------SMPLKEKAAIGVEAIT-TDPENAWAISAYGGVSVLIEAFRSG--TALTQSHAVGAIRNIAAV-E 319 (579)
Q Consensus 251 ~Lv~lL~~~-------~~~v~~~aa~~L~~Ls-~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~a~~aL~nLs~~-~ 319 (579)
.++++|+.- +.+....++..|.|-. .+.+.+..+.+.|+++.|...+.-+ +...-+.......|+... .
T Consensus 133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~ 212 (604)
T KOG4500|consen 133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC 212 (604)
T ss_pred ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence 888888752 3455666777788876 4667888999999999999987643 444445555555666542 2
Q ss_pred h-hHHHHHHcCCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCC---Ch---HHHH
Q 047123 320 D-IKAALAEEGAVPVLVQSLTS-SSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTS---SI---VTVE 391 (579)
Q Consensus 320 ~-~~~~l~~~g~v~~Lv~lL~~-~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~---~~---~~~~ 391 (579)
+ ......+...+..+++++.+ -.++..+.+...|+..+..+ ..+-.+.+.|.++.++.+++.... +. ..-.
T Consensus 213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend-~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k 291 (604)
T KOG4500|consen 213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAEND-LVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFK 291 (604)
T ss_pred HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCc-ceeeehhhcchHHHHHHHHHhcccccchHHHHHHHH
Confidence 2 24445566777788888854 46788899999999998866 568889999999999988876321 00 1122
Q ss_pred HHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH--HHHHHHhccC---
Q 047123 392 NALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASC--MGSLIKLMEC--- 465 (579)
Q Consensus 392 ~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~--v~~Lv~lL~~--- 465 (579)
.++....-|..+ +....+... +.++..+..++.+.+...+..+.-+++|++.++.+...+.+. +..|+..+..
T Consensus 292 ~~~el~vllltGDeSMq~L~~~-p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~ 370 (604)
T KOG4500|consen 292 RIAELDVLLLTGDESMQKLHAD-PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKD 370 (604)
T ss_pred hhhhHhhhhhcCchHHHHHhcC-cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 233333333334 555556555 238999999999999999999999999999999999888888 8888887722
Q ss_pred -CCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHH
Q 047123 466 -PKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAV 525 (579)
Q Consensus 466 -~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L 525 (579)
..+.+++.+++.||.||+...+|+..++. .|..+.++.++....+++ .....+.+..+
T Consensus 371 vdgnV~~qhA~lsALRnl~IPv~nka~~~~-aGvteaIL~~lk~~~ppv-~fkllgTlrM~ 429 (604)
T KOG4500|consen 371 VDGNVERQHACLSALRNLMIPVSNKAHFAP-AGVTEAILLQLKLASPPV-TFKLLGTLRMI 429 (604)
T ss_pred CCccchhHHHHHHHHHhccccCCchhhccc-cchHHHHHHHHHhcCCcc-hHHHHHHHHHH
Confidence 34778899999999999999999999985 888899999998888773 33344434443
No 20
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.60 E-value=3.6e-13 Score=133.05 Aligned_cols=384 Identities=15% Similarity=0.090 Sum_probs=277.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCC----C---HHHHHHHHHHHHHhhcc
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHH----Q---SSIREQAVLALSIIVSA 235 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~----~---~~~~~~A~~aL~~La~~ 235 (579)
++..|.....+.+.++-.+..++|+++|.++.++|..+.+.||-..++.+|+ .- + .+.-.-+...|.|-..+
T Consensus 88 ~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~-~~cs~d~~ane~~~~v~~g~l~Ny~l~ 166 (604)
T KOG4500|consen 88 ALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLK-PYCSKDNPANEEYSAVAFGVLHNYILD 166 (604)
T ss_pred HHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhc-cccccCCccHHHHHHHHHHHHHHhhCC
Confidence 4555666666778899999999999999999999999999999777777775 31 2 23444566778887777
Q ss_pred ChhhHHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhcC-CCc-cHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHH
Q 047123 236 NDESRKIVFEEGGLGPLLRILETG--SMPLKEKAAIGVEAITT-DPE-NAWAISAYGGVSVLIEAFRSG-TALTQSHAVG 310 (579)
Q Consensus 236 ~~~~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~aa~~L~~Ls~-~~~-~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~ 310 (579)
+++.+.++++.|+++.|...+.-+ +....+.......+|.+ ..+ ......+......+++++.+. .++..+-...
T Consensus 167 ~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~fe 246 (604)
T KOG4500|consen 167 SRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFE 246 (604)
T ss_pred cHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHH
Confidence 899999999999999999998765 45555555555555442 112 233344466777788877753 5567788888
Q ss_pred HHHHhhcChhhHHHHHHcCCHHHHHHHhcC-C-----CH--HHHHHHHHHHHHHhcCChhhHHHHHhcC-cHHHHHHhhc
Q 047123 311 AIRNIAAVEDIKAALAEEGAVPVLVQSLTS-S-----SN--LAQENAADCIATLAASGEYFRLLIIQER-GLQRLMHLIQ 381 (579)
Q Consensus 311 aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~-~-----~~--~v~~~a~~~L~~La~~~~~~r~~l~~~g-~i~~Lv~ll~ 381 (579)
.|...+.++..+-.+++.|.+..++.+++. . ++ ..-..++....-+..+|+..+ .+...+ .++.++.++.
T Consensus 247 ila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq-~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 247 ILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQ-KLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHH-HHhcCcHHHHHHHHHhc
Confidence 899999999999999999999999988854 1 11 244456666666666776643 344444 8899999999
Q ss_pred cCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhc-----CCHHHHHHHHHHHHHhcCChhhHHHHHHH
Q 047123 382 DSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKR-----GNVLLQQVSSSLLGNLSISDGNKRAVASC 455 (579)
Q Consensus 382 ~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~-----~~~~v~~~A~~aL~~L~~~~~~~~~i~~~ 455 (579)
+.+. .....+.-+|.|+++. +.+..+++. |++..|+.++.. ++.++|..++.||+|+.....++..|.++
T Consensus 326 S~d~--~l~t~g~LaigNfaR~D~~ci~~v~~--~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~a 401 (604)
T KOG4500|consen 326 SDDS--NLITMGSLAIGNFARRDDICIQLVQK--DFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPA 401 (604)
T ss_pred CCch--hHHHHHHHHHHhhhccchHHHHHHHH--HHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhcccc
Confidence 8887 8999999999999999 788899999 999999999843 57789999999999999888889999998
Q ss_pred --HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCc-chhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCC-Ch
Q 047123 456 --MGSLIKLMECPKPVGLQEAATDAVLSLLTVRS-NRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGG-SN 531 (579)
Q Consensus 456 --v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~-~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~-~~ 531 (579)
.+.++.++ +...+.+...-...|..+....+ -..++.+...-+..|++.-.+++...+.......+..|-.+. ..
T Consensus 402 GvteaIL~~l-k~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~k 480 (604)
T KOG4500|consen 402 GVTEAILLQL-KLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYK 480 (604)
T ss_pred chHHHHHHHH-HhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhh
Confidence 78888888 66677788777777776654433 233444444456778877776664422222222333332221 11
Q ss_pred hHHHHHHHcCchHHHHhhhccC
Q 047123 532 GCRKRLVAAGAYQHLQKLAETE 553 (579)
Q Consensus 532 ~~r~~i~~~g~~~~L~~L~~~~ 553 (579)
+.-..+...|++++.+.++..+
T Consensus 481 dv~~tvpksg~ik~~Vsm~t~~ 502 (604)
T KOG4500|consen 481 DVILTVPKSGGIKEKVSMFTKN 502 (604)
T ss_pred hhHhhccccccHHHHHHHHHHh
Confidence 1455666788888877765443
No 21
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=5.7e-13 Score=133.10 Aligned_cols=322 Identities=15% Similarity=0.132 Sum_probs=262.5
Q ss_pred HHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCC
Q 047123 222 REQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGT 301 (579)
Q Consensus 222 ~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~ 301 (579)
...|+..|.|++. +-.....+.....+..|++.|+..+.++-......|-+|+-..+|+..+.+.|.+..|+.+....+
T Consensus 280 Lrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h 358 (791)
T KOG1222|consen 280 LRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQH 358 (791)
T ss_pred HHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCC
Confidence 3457778899999 888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhc
Q 047123 302 ALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQ 381 (579)
Q Consensus 302 ~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~ 381 (579)
++++...+..|.|++.+...+..|+..|.+|.++.++.+.+. ..-|+..|..++.++ ..+.++....+++.+...+-
T Consensus 359 ~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v~ 435 (791)
T KOG1222|consen 359 PDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDVL 435 (791)
T ss_pred HHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999976542 344667788888765 67889999999999999776
Q ss_pred cCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHH-HhcCCHHHHHHHHHHHHHhcCChh-hHHHHHHHHHH
Q 047123 382 DSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEF-IKRGNVLLQQVSSSLLGNLSISDG-NKRAVASCMGS 458 (579)
Q Consensus 382 ~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~l-L~~~~~~v~~~A~~aL~~L~~~~~-~~~~i~~~v~~ 458 (579)
.+.. .++-........|||.. .+.+.+.+. .++..|.+. ++..++- -...++|+++++. .+..|.+.|..
T Consensus 436 ~~~~-~~vdl~lia~ciNl~lnkRNaQlvceG--qgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fidyvgd 508 (791)
T KOG1222|consen 436 SGTG-SEVDLALIALCINLCLNKRNAQLVCEG--QGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMFIDYVGD 508 (791)
T ss_pred hcCC-ceecHHHHHHHHHHHhccccceEEecC--cchHHHHHHHhcccchH----HHHHHHHhhhccchHHHHHHHHHHH
Confidence 6654 24555555555678776 555556665 566666654 4555543 2456899996665 67788888999
Q ss_pred HHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhh-hhHHHHHHHHHHhCCCChhHHHHH
Q 047123 459 LIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEAL-NKKFPVMVTAAVLGGGSNGCRKRL 537 (579)
Q Consensus 459 Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~-~k~~av~~L~~L~~~~~~~~r~~i 537 (579)
|...+...++...-..|.+.|+||...+-....++++..-||.+-+.|.++..+. .....+..+...+.... |...+
T Consensus 509 La~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~--cA~Ll 586 (791)
T KOG1222|consen 509 LAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLD--CARLL 586 (791)
T ss_pred HHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhH--HHHHh
Confidence 9999966667777788889999998888888889999999999999998875432 44555666777777777 99999
Q ss_pred HHcCchHHHHhhhccCCch
Q 047123 538 VAAGAYQHLQKLAETEVPG 556 (579)
Q Consensus 538 ~~~g~~~~L~~L~~~~~~~ 556 (579)
..+|.++.|++|++...++
T Consensus 587 a~a~~i~tlieLL~a~QeD 605 (791)
T KOG1222|consen 587 APAKLIDTLIELLQACQED 605 (791)
T ss_pred CccccHHHHHHHHHhhccc
Confidence 9999999999999886554
No 22
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.58 E-value=4e-13 Score=130.15 Aligned_cols=196 Identities=18% Similarity=0.228 Sum_probs=168.9
Q ss_pred HhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc
Q 047123 201 AKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPEN 280 (579)
Q Consensus 201 ~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~ 280 (579)
.+.+.+..|+.+|+.+.+|.+++.+..++++.+. ++.++..+.+.|+++.+..+|.++++.+++.|.++|.|++.+.++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 4566788999999845689999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHHhcC--CCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123 281 AWAISAYGGVSVLIEAFRS--GTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA 358 (579)
Q Consensus 281 ~~~i~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~ 358 (579)
+..+-. .++.+++.+.+ -+..+|..+.++|.||+..++.+..+.. .++.++.++.+++..++.+++.+|.||+.
T Consensus 88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 998854 36666664444 3678999999999999988777776654 79999999999999999999999999998
Q ss_pred CChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc
Q 047123 359 SGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS 403 (579)
Q Consensus 359 ~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~ 403 (579)
.+ .....+...+++..++.+++.... .+....++..+.|+..+
T Consensus 164 np-~~~~~Ll~~q~~~~~~~Lf~~~~~-~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 164 NP-DMTRELLSAQVLSSFLSLFNSSES-KENLLRVLTFFENINEN 206 (254)
T ss_pred CH-HHHHHHHhccchhHHHHHHccCCc-cHHHHHHHHHHHHHHHh
Confidence 55 456677777899999999988754 36788888999999765
No 23
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.2e-12 Score=138.69 Aligned_cols=421 Identities=15% Similarity=0.133 Sum_probs=286.6
Q ss_pred cccchhHhhhhhhhhhhhhHHHHHhccCCcCcccccccCCCCCchhHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhc
Q 047123 113 MQSDLDIANTSLSNHLHDLDLLLRSGVLHQSNAIVLSQPGPGSHKQDLVLFIRDIFTRLQIG-GVEFKKKALESLLQLLK 191 (579)
Q Consensus 113 ~~s~~d~~~~~l~~~l~d~~~l~~~gi~~~~~~~~~~~p~~~a~~~~~~~~v~~Lv~~L~~~-~~~~~~~Al~~L~~l~~ 191 (579)
+++.-|. +.....+.+++.++. +-.+. .+ +..++..+|+.|+.+|++. +.+.+..|+++|..++.
T Consensus 176 L~~~~De--s~Qleal~Elce~L~--mgnEe---sL-------s~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~e 241 (1051)
T KOG0168|consen 176 LQAESDE--SQQLEALTELCEMLS--MGNEE---SL-------SGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCE 241 (1051)
T ss_pred ccccCCh--HHHHHHHHHHHHHHh--hcchh---hh-------ccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 4444443 333345556666666 33332 22 2346677999999999875 78999999999999999
Q ss_pred cChhhHHHHHhhCcHHHHHH-hhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHH
Q 047123 192 DDDKSAAVVAKEGNVGYLIS-LLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIG 270 (579)
Q Consensus 192 ~~~~~~~~i~~~g~v~~Lv~-LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~ 270 (579)
--|.....++++++||.|++ |+. -...++.|+++.+|..|++ .....+.++|++...+.+|+..+..+|+.|..+
T Consensus 242 vlP~S~a~vV~~~aIPvl~~kL~~-IeyiDvAEQ~LqALE~iSR---~H~~AiL~AG~l~a~LsylDFFSi~aQR~Alai 317 (1051)
T KOG0168|consen 242 VLPRSSAIVVDEHAIPVLLEKLLT-IEYIDVAEQSLQALEKISR---RHPKAILQAGALSAVLSYLDFFSIHAQRVALAI 317 (1051)
T ss_pred hccchhheeecccchHHHHHhhhh-hhhhHHHHHHHHHHHHHHh---hccHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 555 7789999999999999999 666788999999999999999999999999999
Q ss_pred HHHhcC--CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc----ChhhHHHHHHcCCHHHHHHHhcCC---
Q 047123 271 VEAITT--DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA----VEDIKAALAEEGAVPVLVQSLTSS--- 341 (579)
Q Consensus 271 L~~Ls~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~----~~~~~~~l~~~g~v~~Lv~lL~~~--- 341 (579)
..|.|. .++.-..+ ...+|.|..+|+..|.+..+.++.++..++. .++.-+++...|.|....+++.-.
T Consensus 318 aaN~Cksi~sd~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~ 395 (1051)
T KOG0168|consen 318 AANCCKSIRSDEFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTI 395 (1051)
T ss_pred HHHHHhcCCCccchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccc
Confidence 999994 33333333 3578999999999999999999999988865 345566788999999999998543
Q ss_pred -CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCC-------------hHHHHHHHHHHHHcccc---h
Q 047123 342 -SNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSS-------------IVTVENALLAISSLSLS---D 404 (579)
Q Consensus 342 -~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~-------------~~~~~~A~~aL~~L~~~---~ 404 (579)
+..+....+..|..++++.+...+.+.+.++...|..++...+.+ .++-+..... ..|-.. +
T Consensus 396 Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~-~eLlp~~p~e 474 (1051)
T KOG0168|consen 396 LSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLI-IELLPCLPVE 474 (1051)
T ss_pred ccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHH-heeecCCccc
Confidence 335777888999999998888889999999998888887654320 1111111111 111111 1
Q ss_pred ---hH-----HHHHhh-----------------cCcHHHHHHHHHhcCCH---HHHHHHH-HH-HHHhcCChhhHHHHHH
Q 047123 405 ---SA-----ARILSS-----------------TTSFIIQLGEFIKRGNV---LLQQVSS-SL-LGNLSISDGNKRAVAS 454 (579)
Q Consensus 405 ---~~-----~~l~~~-----------------~~g~i~~L~~lL~~~~~---~v~~~A~-~a-L~~L~~~~~~~~~i~~ 454 (579)
.. ..++.. -+.+..+++.-++.... .++..-. .+ -.-|...|+.-+.|..
T Consensus 475 ~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~ 554 (1051)
T KOG0168|consen 475 GIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK 554 (1051)
T ss_pred ceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH
Confidence 00 000000 00112222222222111 1111100 11 1123356688888888
Q ss_pred H-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCC--cchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCCh
Q 047123 455 C-MGSLIKLMECPKPVGLQEAATDAVLSLLTVR--SNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSN 531 (579)
Q Consensus 455 ~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~--~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~ 531 (579)
. +|.|+++...+-++.||..|..||..|.... +-.+.++++...-..+-.+|...+..+ -.-|+.+.-.|...=++
T Consensus 555 ~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~v-lVgALQvAEiLmeKlpd 633 (1051)
T KOG0168|consen 555 DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTV-LVGALQVAEILMEKLPD 633 (1051)
T ss_pred HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCee-EeehHHHHHHHHHHhHH
Confidence 8 9999999977789999999999999997643 335556655555566777787777663 22222222222211111
Q ss_pred hHHHHHHHcCchHHHHhhhccCCc
Q 047123 532 GCRKRLVAAGAYQHLQKLAETEVP 555 (579)
Q Consensus 532 ~~r~~i~~~g~~~~L~~L~~~~~~ 555 (579)
---+-++.+|++..+.+|....++
T Consensus 634 ~F~~~F~REGV~~~v~~L~~~~~~ 657 (1051)
T KOG0168|consen 634 TFSPSFRREGVFHAVKQLSVDSNP 657 (1051)
T ss_pred HhhhhHhhhhHHHHHHHHhccCCc
Confidence 145778889999999999884433
No 24
>PRK09687 putative lyase; Provisional
Probab=99.55 E-value=1.9e-12 Score=128.31 Aligned_cols=254 Identities=14% Similarity=0.044 Sum_probs=201.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
.+..|+..|.+.+..+|..|+..|..+-. ...++.+..+++ ++++.+|..|+.+|+.|.. .+..
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~-~~d~~vR~~A~~aLg~lg~-~~~~--- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCS-SKNPIERDIGADILSQLGM-AKRC--- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHh-CCCHHHHHHHHHHHHhcCC-Cccc---
Confidence 37889999999999999999999987742 345778888998 9999999999999999986 3222
Q ss_pred HHhcCCHHHHHHH-HccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhh
Q 047123 243 VFEEGGLGPLLRI-LETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDI 321 (579)
Q Consensus 243 i~~~g~l~~Lv~l-L~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~ 321 (579)
....++.|..+ +++.++.|+..++.+|.++....... ....+..+...+.++++.++..++.+|..+..
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~---- 157 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND---- 157 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----
Confidence 12356777766 67789999999999999996432111 12245667778888899999999999976532
Q ss_pred HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcc
Q 047123 322 KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLS 401 (579)
Q Consensus 322 ~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~ 401 (579)
..+++.|+.++.+.++.++..|+.+|+.+...++ ..++.|+..+.+.+. .++..|+.+|..+-
T Consensus 158 ------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~--~VR~~A~~aLg~~~ 220 (280)
T PRK09687 158 ------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNE--EIRIEAIIGLALRK 220 (280)
T ss_pred ------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCCh--HHHHHHHHHHHccC
Confidence 2378999999999999999999999999844332 357888999987776 89999999999875
Q ss_pred cchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHH
Q 047123 402 LSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVL 480 (579)
Q Consensus 402 ~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~ 480 (579)
.. .+++.|+..+++++ ++..++.+|.++..... ++.|.++++...+..++..+.++|.
T Consensus 221 ~~-----------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~~a--------~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 221 DK-----------RVLSVLIKELKKGT--VGDLIIEAAGELGDKTL--------LPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred Ch-----------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCHhH--------HHHHHHHHhhCCChhHHHHHHHHHh
Confidence 44 78999999999876 67789999999975322 8999999954678999998888775
No 25
>PRK09687 putative lyase; Provisional
Probab=99.53 E-value=2.1e-12 Score=127.92 Aligned_cols=253 Identities=13% Similarity=0.058 Sum_probs=199.1
Q ss_pred cHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHH
Q 047123 205 NVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAI 284 (579)
Q Consensus 205 ~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i 284 (579)
.++.|..+|. +.+..+|..|+.+|..+.. ..+++.+.+++++.++.+|..++++|..|...+..
T Consensus 24 ~~~~L~~~L~-d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 24 NDDELFRLLD-DHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred cHHHHHHHHh-CCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 5888999999 9999999999999999887 56788899999999999999999999999753322
Q ss_pred HhcCcHHHHHHH-hcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh
Q 047123 285 SAYGGVSVLIEA-FRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF 363 (579)
Q Consensus 285 ~~~g~i~~Lv~l-l~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~ 363 (579)
....++.|..+ +++.++.++..++.+|.++....... ...+++.+...+.+.+..++..++.+|..+..
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----- 157 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND----- 157 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-----
Confidence 22355777776 67789999999999999986532211 11245567777888899999999999976542
Q ss_pred HHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123 364 RLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS 443 (579)
Q Consensus 364 r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~ 443 (579)
...++.|+.++.+.++ .++..|+.+|..+.... +.+++.|+.++.+.+..|+..|+.+|.++.
T Consensus 158 ------~~ai~~L~~~L~d~~~--~VR~~A~~aLg~~~~~~---------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 158 ------EAAIPLLINLLKDPNG--DVRNWAAFALNSNKYDN---------PDIREAFVAMLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred ------HHHHHHHHHHhcCCCH--HHHHHHHHHHhcCCCCC---------HHHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence 3368999999998776 89999999999984331 157788999999999999999999999875
Q ss_pred CChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcC-CCchhhhhHHHHHHH
Q 047123 444 ISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLD-PKNEALNKKFPVMVT 522 (579)
Q Consensus 444 ~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~~~k~~av~~L 522 (579)
... .++.|++.| ...+ ++..++.+|+++.. ...++.|.++++ ..++. ++..++.+|
T Consensus 221 ~~~--------av~~Li~~L-~~~~--~~~~a~~ALg~ig~-----------~~a~p~L~~l~~~~~d~~-v~~~a~~a~ 277 (280)
T PRK09687 221 DKR--------VLSVLIKEL-KKGT--VGDLIIEAAGELGD-----------KTLLPVLDTLLYKFDDNE-IITKAIDKL 277 (280)
T ss_pred Chh--------HHHHHHHHH-cCCc--hHHHHHHHHHhcCC-----------HhHHHHHHHHHhhCCChh-HHHHHHHHH
Confidence 332 299999999 4433 78889999999874 467899999997 44444 677777655
Q ss_pred H
Q 047123 523 A 523 (579)
Q Consensus 523 ~ 523 (579)
.
T Consensus 278 ~ 278 (280)
T PRK09687 278 K 278 (280)
T ss_pred h
Confidence 3
No 26
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.51 E-value=3.3e-12 Score=123.83 Aligned_cols=217 Identities=16% Similarity=0.151 Sum_probs=174.4
Q ss_pred HhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh
Q 047123 285 SAYGGVSVLIEAFRS-GTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF 363 (579)
Q Consensus 285 ~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~ 363 (579)
.+.+-++.|+.+|+. .|+.+++.+..++.|.+.++.++..+.+.|+++.+..++.++++.+++.|+.+|.|++...++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en- 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN- 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh-
Confidence 445677999999995 689999999999999999999999999999999999999999999999999999999986644
Q ss_pred HHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123 364 RLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS 443 (579)
Q Consensus 364 r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~ 443 (579)
+..+- ..++.+.+.+.+...+..++..+.++|.||+..+....++. +.++.++.+|..|+..+|..+.++|.||+
T Consensus 88 ~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 88 QEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 44442 25777777655554334899999999999998755555554 58999999999999999999999999999
Q ss_pred CChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcch-hHHHhhcccHHHHHhhcC
Q 047123 444 ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNR-KELVRDEKSVMRLMQMLD 507 (579)
Q Consensus 444 ~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~-~~~~~~~~~i~~Lv~lL~ 507 (579)
.++.+.+.+..+ +..|+.++....+.++...+...+.|+....... ..+.++...-..|..++.
T Consensus 163 ~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~ 229 (254)
T PF04826_consen 163 ENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFG 229 (254)
T ss_pred cCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHc
Confidence 999988877777 8899999955567888999999999997654332 222323344445554444
No 27
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.48 E-value=2.2e-11 Score=140.29 Aligned_cols=274 Identities=15% Similarity=0.130 Sum_probs=217.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
.++.|+..|++.++.+|..|+..|..+. ..+.++.|+.+|+ ++++.+|..|+.+|..+.. ..
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~-D~d~~VR~~Aa~aL~~l~~-~~----- 683 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALG-DGAAAVRRAAAEGLRELVE-VL----- 683 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHc-CCCHHHHHHHHHHHHHHHh-cc-----
Confidence 3678899999999999999999998874 2446899999999 9999999999999988864 21
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhH
Q 047123 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIK 322 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~ 322 (579)
...+.|...|++.++.+|..++.+|..+... ....|+..|.+.++.++..|+.+|..+.
T Consensus 684 ----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-----------~~~~l~~~L~D~d~~VR~~Av~aL~~~~------ 742 (897)
T PRK13800 684 ----PPAPALRDHLGSPDPVVRAAALDVLRALRAG-----------DAALFAAALGDPDHRVRIEAVRALVSVD------ 742 (897)
T ss_pred ----CchHHHHHHhcCCCHHHHHHHHHHHHhhccC-----------CHHHHHHHhcCCCHHHHHHHHHHHhccc------
Confidence 1235788889999999999999999887532 2356788899999999999999988752
Q ss_pred HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHccc
Q 047123 323 AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSL 402 (579)
Q Consensus 323 ~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~ 402 (579)
..+.|..++.+.++.++..++.+|..+.... ...++.|..++.+.++ .++..|+.+|.++..
T Consensus 743 -------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~--~VR~aA~~aLg~~g~ 804 (897)
T PRK13800 743 -------DVESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDP--LVRAAALAALAELGC 804 (897)
T ss_pred -------CcHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCH--HHHHHHHHHHHhcCC
Confidence 2345677889999999999999999886532 2236788888887765 899999999998864
Q ss_pred chhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHh
Q 047123 403 SDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSL 482 (579)
Q Consensus 403 ~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L 482 (579)
.. ..+..+...|.+.+..||..|+.+|..+...+. ++.|+.+| ++++..||..|+.+|..+
T Consensus 805 ~~----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a--------~~~L~~~L-~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 805 PP----------DDVAAATAALRASAWQVRQGAARALAGAAADVA--------VPALVEAL-TDPHLDVRKAAVLALTRW 865 (897)
T ss_pred cc----------hhHHHHHHHhcCCChHHHHHHHHHHHhccccch--------HHHHHHHh-cCCCHHHHHHHHHHHhcc
Confidence 31 234567888999999999999999998864333 78999999 788999999999999997
Q ss_pred hcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHH
Q 047123 483 LTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTA 523 (579)
Q Consensus 483 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~ 523 (579)
.. +....+.|.+.|++.+.. ++..++.+|.
T Consensus 866 ~~----------~~~a~~~L~~al~D~d~~-Vr~~A~~aL~ 895 (897)
T PRK13800 866 PG----------DPAARDALTTALTDSDAD-VRAYARRALA 895 (897)
T ss_pred CC----------CHHHHHHHHHHHhCCCHH-HHHHHHHHHh
Confidence 22 133467788888888777 7777776654
No 28
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=1.5e-10 Score=116.08 Aligned_cols=366 Identities=16% Similarity=0.146 Sum_probs=269.6
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc
Q 047123 178 FKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILE 257 (579)
Q Consensus 178 ~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~ 257 (579)
..+.|+..|.+++. +-..-..+.....|..||+.|+ ..+.+........|..|+- ..+++..+.+.|.+..|+++..
T Consensus 279 LLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLd-r~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp 355 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALD-RSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFP 355 (791)
T ss_pred HHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHc-ccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcC
Confidence 34567888888874 3344455677888999999999 7788888888899999999 9999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHH
Q 047123 258 TGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQS 337 (579)
Q Consensus 258 ~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~l 337 (579)
...++++......|.||+.+...+..+++.|.+|.|..++.+++. ...|...|..++.++..+..+....+|+.++..
T Consensus 356 ~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~ 433 (791)
T KOG1222|consen 356 IQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKD 433 (791)
T ss_pred CCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988765 446778889999999999988888899999887
Q ss_pred hcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHh-hccCCCChHHHHHHHHHHHHcccch--hHHHHHhhc
Q 047123 338 LTS-SSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHL-IQDSTSSIVTVENALLAISSLSLSD--SAARILSST 413 (579)
Q Consensus 338 L~~-~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~l-l~~~~~~~~~~~~A~~aL~~L~~~~--~~~~l~~~~ 413 (579)
+-+ .+..+-...+....|+|.... ..+.+.+..++..|+.. ++..+. .-...++|++.++ ....++
T Consensus 434 v~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~------lLmK~vRniSqHeg~tqn~Fi--- 503 (791)
T KOG1222|consen 434 VLSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDL------LLMKVVRNISQHEGATQNMFI--- 503 (791)
T ss_pred HHhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhcccch------HHHHHHHHhhhccchHHHHHH---
Confidence 643 344455555555567776332 23455666678777764 333332 2345688888873 333343
Q ss_pred CcHHHHHHHHHhcCC-HHHHHHHHHHHHHhcCC-hhhHHHHHHH--HHHHHHhccC-CCCHhHHHHHHHHHHHhhcCCcc
Q 047123 414 TSFIIQLGEFIKRGN-VLLQQVSSSLLGNLSIS-DGNKRAVASC--MGSLIKLMEC-PKPVGLQEAATDAVLSLLTVRSN 488 (579)
Q Consensus 414 ~g~i~~L~~lL~~~~-~~v~~~A~~aL~~L~~~-~~~~~~i~~~--v~~Lv~lL~~-~~~~~v~~~a~~aL~~L~~~~~~ 488 (579)
..+..|...+...+ ...-.++...+.||... -+-.+.+.+. ||-+-..|.. ....++.....-+++.+++...+
T Consensus 504 -dyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~c 582 (791)
T KOG1222|consen 504 -DYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDC 582 (791)
T ss_pred -HHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHH
Confidence 35777777776654 45667889999999944 4444444444 7777766622 23456677777778888877666
Q ss_pred hhHHHhhcccHHHHHhhcCCCchh-hhhHHHHHHHHHHhCCCChhHHHHHH-HcCchHHHHhhhccCCchHHHHHH
Q 047123 489 RKELVRDEKSVMRLMQMLDPKNEA-LNKKFPVMVTAAVLGGGSNGCRKRLV-AAGAYQHLQKLAETEVPGAKKVLQ 562 (579)
Q Consensus 489 ~~~~~~~~~~i~~Lv~lL~~~~~~-~~k~~av~~L~~L~~~~~~~~r~~i~-~~g~~~~L~~L~~~~~~~ak~~~~ 562 (579)
...+. ..+.|+.++++|.....+ ....+.+-+...+...+. .|..|+ +...-.+|+.|....+...+|+++
T Consensus 583 A~Lla-~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~--tr~~miket~~~AylIDLMHDkN~eiRkVCD 655 (791)
T KOG1222|consen 583 ARLLA-PAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHEL--TRRLMIKETALGAYLIDLMHDKNAEIRKVCD 655 (791)
T ss_pred HHHhC-ccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH--HHHHHHhhccchHHHHHHHhcccHHHHHHHH
Confidence 66555 488999999999865432 134444555555555554 666665 677788999999998887776654
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.42 E-value=7e-11 Score=136.09 Aligned_cols=269 Identities=14% Similarity=0.168 Sum_probs=212.6
Q ss_pred hCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHH
Q 047123 203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAW 282 (579)
Q Consensus 203 ~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~ 282 (579)
...++.|+..|+ ++++.+|..|+..|..+.. .+.++.|++.|++.+..++..|+.+|..+.....
T Consensus 620 ~~~~~~L~~~L~-D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~--- 684 (897)
T PRK13800 620 APSVAELAPYLA-DPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP--- 684 (897)
T ss_pred chhHHHHHHHhc-CCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---
Confidence 346889999999 9999999999999998876 5678999999999999999999999998853211
Q ss_pred HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh
Q 047123 283 AISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEY 362 (579)
Q Consensus 283 ~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~ 362 (579)
..+.|...|.+.++.++..++.+|..+.. +-...++..|.+.++.++..++.+|..+-.
T Consensus 685 ------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~---- 743 (897)
T PRK13800 685 ------PAPALRDHLGSPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVDD---- 743 (897)
T ss_pred ------chHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhcccC----
Confidence 23578888999999999999999987642 223467788999999999999999887521
Q ss_pred hHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 047123 363 FRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNL 442 (579)
Q Consensus 363 ~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L 442 (579)
.+.|..++.+.+. .++..++.+|..+.... . ..++.|..++++.++.+|..|+.+|.++
T Consensus 744 ----------~~~l~~~l~D~~~--~VR~~aa~aL~~~~~~~-------~--~~~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 744 ----------VESVAGAATDENR--EVRIAVAKGLATLGAGG-------A--PAGDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred ----------cHHHHHHhcCCCH--HHHHHHHHHHHHhcccc-------c--hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 2345667777665 89999999999887541 1 3467888999999999999999999999
Q ss_pred cCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHH
Q 047123 443 SISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVT 522 (579)
Q Consensus 443 ~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L 522 (579)
...+.. ++.++..| .+++..||..|+.+|..+.. ...++.|+.+|.+++.. ++..++.+|
T Consensus 803 g~~~~~-------~~~l~~aL-~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~-VR~~A~~aL 862 (897)
T PRK13800 803 GCPPDD-------VAAATAAL-RASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDPHLD-VRKAAVLAL 862 (897)
T ss_pred CCcchh-------HHHHHHHh-cCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHH-HHHHHHHHH
Confidence 744321 35678888 66789999999999998653 45678999999988877 888998888
Q ss_pred HHHhCCCChhHHHHHHHcCchHHHHhhhccCCchHHH
Q 047123 523 AAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKK 559 (579)
Q Consensus 523 ~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~~~ak~ 559 (579)
..+..++ ...+.|.++++.++++.++
T Consensus 863 ~~~~~~~-----------~a~~~L~~al~D~d~~Vr~ 888 (897)
T PRK13800 863 TRWPGDP-----------AARDALTTALTDSDADVRA 888 (897)
T ss_pred hccCCCH-----------HHHHHHHHHHhCCCHHHHH
Confidence 8873222 2466777888877776544
No 30
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.38 E-value=6.2e-10 Score=114.83 Aligned_cols=347 Identities=14% Similarity=0.097 Sum_probs=243.0
Q ss_pred HHHHHHHHHhcc-CCHHHHHHHHHHHHHHhccChhhHHHHHhh-----CcHHHHHHhhccCCCHHHHHHHHHHHHHhhcc
Q 047123 162 LFIRDIFTRLQI-GGVEFKKKALESLLQLLKDDDKSAAVVAKE-----GNVGYLISLLDFHHQSSIREQAVLALSIIVSA 235 (579)
Q Consensus 162 ~~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~-----g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~ 235 (579)
.++..++.+|+. ...+.....+.-+.++..+++.....+.+. +...+++.+|. .++.-++..|+..|..+...
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~-~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLN-RQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHc-CCchhHHHHHHHHHHHHHhc
Confidence 467888888864 567778888999999999888877777654 56788888998 88999999999999988752
Q ss_pred ChhhHHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCC--CHHHHHHHHHHH
Q 047123 236 NDESRKIVFEEGGLGPLLRILETG-SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSG--TALTQSHAVGAI 312 (579)
Q Consensus 236 ~~~~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~a~~aL 312 (579)
.+.........-.++-+...|+++ +...+..++.+|..|...++.|..+.+.++++.|+.+++.. +.+++..++-++
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 222211111111334556666654 46778888899999999999999999999999999999863 458999999999
Q ss_pred HHhhcChhhHHHHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCC------hhhHHHHHhcCcHHHHHHhhccCCC
Q 047123 313 RNIAAVEDIKAALAEEGAVPVLVQSLTSS-SNLAQENAADCIATLAASG------EYFRLLIIQERGLQRLMHLIQDSTS 385 (579)
Q Consensus 313 ~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~~La~~~------~~~r~~l~~~g~i~~Lv~ll~~~~~ 385 (579)
+-|+.+++....+...+.|+.++++++.. -+.+...++.+|.|+...+ ......+++.|.++.+-.+....-.
T Consensus 212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~ 291 (429)
T cd00256 212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYD 291 (429)
T ss_pred HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCC
Confidence 99999988877888889999999999654 5679999999999998743 1234566666766555444444433
Q ss_pred ChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-C----hhhHHHHHHH----H
Q 047123 386 SIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI-S----DGNKRAVASC----M 456 (579)
Q Consensus 386 ~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~-~----~~~~~~i~~~----v 456 (579)
++++.+..-..-..|-.. .+.+ .-......=+.+|.- =|.-.+ + .++...|.+. +
T Consensus 292 DedL~edl~~L~e~L~~~--~k~l-----tsfD~Y~~El~sg~L---------~WSp~H~se~FW~EN~~kf~~~~~~ll 355 (429)
T cd00256 292 DEDLTDDLKFLTEELKNS--VQDL-----SSFDEYKSELRSGRL---------HWSPVHKSEKFWRENADRLNEKNYELL 355 (429)
T ss_pred cHHHHHHHHHHHHHHHHH--HHHc-----CCHHHHHHHHhcCCc---------cCCCCCCCchHHHHHHHHHHhcchHHH
Confidence 334433221111111100 0000 001111111111110 011111 1 2455555555 7
Q ss_pred HHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHh
Q 047123 457 GSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVL 526 (579)
Q Consensus 457 ~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~ 526 (579)
..|+++|+.++++.+..-||.=++.+++..+..+.++.+-|+=..++++|.+++++ ++..|+-++..|.
T Consensus 356 k~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~-Vr~eAL~avQklm 424 (429)
T cd00256 356 KILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPN-VRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHH-HHHHHHHHHHHHH
Confidence 89999996677888889999999999999999999998888989999999999888 8888888777664
No 31
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.29 E-value=8e-11 Score=101.48 Aligned_cols=116 Identities=28% Similarity=0.456 Sum_probs=107.8
Q ss_pred HHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-
Q 047123 200 VAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDP- 278 (579)
Q Consensus 200 i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~- 278 (579)
+.+.|+++.|+++++ ++++.+++.++.+|.+++..++++...+++.|+++.++++|.++++.++..++++|.+|+.++
T Consensus 3 ~~~~~~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLS-SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHH-cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 568899999999999 999999999999999999955999999999999999999999999999999999999999766
Q ss_pred ccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 047123 279 ENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIA 316 (579)
Q Consensus 279 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs 316 (579)
+....+.+.|+++.|++++.+++..+++.++++|.|++
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 56677788999999999999999999999999999986
No 32
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.27 E-value=1.2e-10 Score=100.38 Aligned_cols=118 Identities=30% Similarity=0.376 Sum_probs=109.1
Q ss_pred HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh
Q 047123 283 AISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV-EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGE 361 (579)
Q Consensus 283 ~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~-~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~ 361 (579)
.+.+.|+++.|++++.++++.++..++.+|.+++.. ++....+.+.|+++.++.++.++++.++..++++|.+++...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467889999999999999999999999999999996 8888899999999999999999999999999999999999887
Q ss_pred hhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHccc
Q 047123 362 YFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSL 402 (579)
Q Consensus 362 ~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~ 402 (579)
..+..+.+.|+++.+++++...+. .+++.++.+|++|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~--~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNE--DIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCH--HHHHHHHHHHHHhhC
Confidence 778888899999999999998865 899999999999873
No 33
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.27 E-value=5.7e-09 Score=109.12 Aligned_cols=386 Identities=13% Similarity=0.082 Sum_probs=258.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCC--CHHHHHHHHHHHHHhhccChhhHHH
Q 047123 165 RDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHH--QSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 165 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~--~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
.+++..+.+.+++....|..-..++..+.++....+++.|.++.|+.++. .. .++.+.....++..+..........
T Consensus 12 ~~~l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s-~e~~s~~~k~~~~~llns~f~~eqd~v~s 90 (678)
T KOG1293|consen 12 LDLLYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLS-LEDGSTELKNGFAVLLNSLFLGEQDKVDS 90 (678)
T ss_pred HHHHHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhcc-ccCCchhhhhhHHHHHHhHHhhccchHHH
Confidence 46677788889999899999999998888888888999999999999987 44 4666656666777777657778889
Q ss_pred HHhcCCHHHHHHHHccCC-HHHHHHHHHHHHHhcCCCccHH---HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 047123 243 VFEEGGLGPLLRILETGS-MPLKEKAAIGVEAITTDPENAW---AISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV 318 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~-~~v~~~aa~~L~~Ls~~~~~~~---~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~ 318 (579)
+.+.+.++.|+++|.+.+ ..+.+...+++.++......+. .......+..+..+...+.......-+....+++..
T Consensus 91 vL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~ 170 (678)
T KOG1293|consen 91 VLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSST 170 (678)
T ss_pred HHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccc
Confidence 999999999999999988 8899999999999985443322 222334555555555535555666667777788888
Q ss_pred hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHH---HHhcCChhhHHHH----HhcCcHH--HHHHhhccCCCChHH
Q 047123 319 EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIA---TLAASGEYFRLLI----IQERGLQ--RLMHLIQDSTSSIVT 389 (579)
Q Consensus 319 ~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~---~La~~~~~~r~~l----~~~g~i~--~Lv~ll~~~~~~~~~ 389 (579)
++.+..+.+.|+.+.+.-++..-+...+..+..++. ++...++.....+ .+.|..+ .+.+++++... ..
T Consensus 171 ~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~--s~ 248 (678)
T KOG1293|consen 171 KDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDF--SE 248 (678)
T ss_pred chhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCc--cH
Confidence 888888889999998877777777789999999999 6666555543322 2344443 33344444443 33
Q ss_pred HHHHHHHHHHcccc--------------hh---------------------------------------HHHHHhhcCcH
Q 047123 390 VENALLAISSLSLS--------------DS---------------------------------------AARILSSTTSF 416 (579)
Q Consensus 390 ~~~A~~aL~~L~~~--------------~~---------------------------------------~~~l~~~~~g~ 416 (579)
+-.++.+|.++... +. .....+. ..
T Consensus 249 ~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~--~~ 326 (678)
T KOG1293|consen 249 RLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEE--AT 326 (678)
T ss_pred HHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhh--hh
Confidence 34444444433321 00 0000000 11
Q ss_pred HHHHHHHH----------------------------------------------------hcCCHHHHHHHHHHHHHhcC
Q 047123 417 IIQLGEFI----------------------------------------------------KRGNVLLQQVSSSLLGNLSI 444 (579)
Q Consensus 417 i~~L~~lL----------------------------------------------------~~~~~~v~~~A~~aL~~L~~ 444 (579)
++...+++ ...+.+....|+..+.+++.
T Consensus 327 ~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~sr 406 (678)
T KOG1293|consen 327 LKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSR 406 (678)
T ss_pred hhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHH
Confidence 11111111 01222333344444444442
Q ss_pred C-hhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHH
Q 047123 445 S-DGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMV 521 (579)
Q Consensus 445 ~-~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~ 521 (579)
+ ...+..+... +.+|++++ ..++..++..+.++|+|+.....+.+...-..|||..+..++.+.++. .+..++++
T Consensus 407 sV~aL~tg~~~~dv~~plvqll-~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n-~r~~~~~~ 484 (678)
T KOG1293|consen 407 SVSALRTGLKRNDVAQPLVQLL-MDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFN-SRANSLWV 484 (678)
T ss_pred HHHHHHcCCccchhHHHHHHHh-hCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCch-HHHHHHHH
Confidence 2 2233333333 88999999 777888999999999999999888776666799999999999998888 88999999
Q ss_pred HHHHhCCCChhHHHHHHHcCchHHHHhhhccCCchH
Q 047123 522 TAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGA 557 (579)
Q Consensus 522 L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~~~a 557 (579)
|.++.-+.++.-.......=....|..+.+.++.+.
T Consensus 485 Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~V 520 (678)
T KOG1293|consen 485 LRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAV 520 (678)
T ss_pred HHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHH
Confidence 999997776334444433334444445555555443
No 34
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.2e-09 Score=114.46 Aligned_cols=404 Identities=17% Similarity=0.119 Sum_probs=274.1
Q ss_pred HHHHHHHHhccC-CHHHHHHHHHHHHHHh-ccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH
Q 047123 163 FIRDIFTRLQIG-GVEFKKKALESLLQLL-KDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR 240 (579)
Q Consensus 163 ~v~~Lv~~L~~~-~~~~~~~Al~~L~~l~-~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~ 240 (579)
-+..|+.-|+.. ++..+.+|+.-|.++. ..+++....+--..+||.|+.||+...+.+++..|+++|.+|+..-|...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 467788888766 8888889988888764 46777777666788999999999944569999999999999999889999
Q ss_pred HHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc--
Q 047123 241 KIVFEEGGLGPLLRILET-GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-- 317 (579)
Q Consensus 241 ~~i~~~g~l~~Lv~lL~~-~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-- 317 (579)
..++++++||.|+.-|-. ..+++.+++..+|..|+.. .-.++.+.|++...+.++..-+..+|..|+.+..|+|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999987766 5789999999999999963 34678899999999999999999999999999999987
Q ss_pred ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc---CChhhHHHHHhcCcHHHHHHhhccCC--CChHHHHH
Q 047123 318 VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA---SGEYFRLLIIQERGLQRLMHLIQDST--SSIVTVEN 392 (579)
Q Consensus 318 ~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~---~~~~~r~~l~~~g~i~~Lv~ll~~~~--~~~~~~~~ 392 (579)
.++.-..+++ ++|.|..+|+..+....+.++-|+..++. .+++.-+++...|.+....+++.... -+..+...
T Consensus 326 ~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~ 403 (1051)
T KOG0168|consen 326 RSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG 403 (1051)
T ss_pred CCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence 3444445555 79999999999999999999999999875 34444577888999988888876543 12356777
Q ss_pred HHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhc-CCh-h-------
Q 047123 393 ALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGN--------------VLLQQVSSSLLGNLS-ISD-G------- 447 (579)
Q Consensus 393 A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~--------------~~v~~~A~~aL~~L~-~~~-~------- 447 (579)
.++.|..+|.+ .....+... ++...|..+|...+ +.-+......+..|- ..+ +
T Consensus 404 vIrmls~msS~~pl~~~tl~k~--~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~ 481 (1051)
T KOG0168|consen 404 VIRMLSLMSSGSPLLFRTLLKL--DIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDC 481 (1051)
T ss_pred HHHHHHHHccCChHHHHHHHHh--hHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhh
Confidence 78888888887 345556666 78888888775322 122222223333332 111 1
Q ss_pred -hHHHHHHH------------------HHHHHHhcc--CCC---CHhHHH-HHHHHHHHhhc-CCcchhHHHhhcccHHH
Q 047123 448 -NKRAVASC------------------MGSLIKLME--CPK---PVGLQE-AATDAVLSLLT-VRSNRKELVRDEKSVMR 501 (579)
Q Consensus 448 -~~~~i~~~------------------v~~Lv~lL~--~~~---~~~v~~-~a~~aL~~L~~-~~~~~~~~~~~~~~i~~ 501 (579)
....+... -....++++ +.+ .-.++. ....+=..+.. .++-.+.|++ ..++.
T Consensus 482 ~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~--~llpV 559 (1051)
T KOG0168|consen 482 SLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK--DLLPV 559 (1051)
T ss_pred hhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH--HHHHH
Confidence 00000000 011112221 000 000000 00000011111 1122334442 46788
Q ss_pred HHhhcCCCchhhhhHHHHHHHHHHhCCCC-hhHHHHHHHcCchHHHHhhhccCCc----hHHHHHHHHhcCcchhhhcc
Q 047123 502 LMQMLDPKNEALNKKFPVMVTAAVLGGGS-NGCRKRLVAAGAYQHLQKLAETEVP----GAKKVLQRLAGNRLKNIFSR 575 (579)
Q Consensus 502 Lv~lL~~~~~~~~k~~av~~L~~L~~~~~-~~~r~~i~~~g~~~~L~~L~~~~~~----~ak~~~~~l~~~~~~~~~~~ 575 (579)
|++...+.-...++.+.+.+|.++....+ +..+..+.+..+-.++-.++..++. +|-.+.+-| --||..+|+.
T Consensus 560 LveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiL-meKlpd~F~~ 637 (1051)
T KOG0168|consen 560 LVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEIL-MEKLPDTFSP 637 (1051)
T ss_pred HHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHH-HHHhHHHhhh
Confidence 89999877655588888888888876553 2345666678888888888777654 333333322 3566677654
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.18 E-value=9.7e-09 Score=112.54 Aligned_cols=331 Identities=18% Similarity=0.172 Sum_probs=220.8
Q ss_pred hHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccCh
Q 047123 158 QDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAND 237 (579)
Q Consensus 158 ~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~ 237 (579)
+.....+..+..-|++.++..|..|+.+|.++. +++... ..++.+.+++. ++++.+|..|+.++..+...++
T Consensus 75 ~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~-----~l~~~v~~ll~-~~~~~VRk~A~~~l~~i~~~~p 146 (526)
T PF01602_consen 75 ELLILIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAE-----PLIPDVIKLLS-DPSPYVRKKAALALLKIYRKDP 146 (526)
T ss_dssp HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHH-----HHHHHHHHHHH-SSSHHHHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhh-----HHHHHHHHHhc-CCchHHHHHHHHHHHHHhccCH
Confidence 334556788888899999999999999999987 444432 34788889999 9999999999999999987444
Q ss_pred hhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 047123 238 ESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA 317 (579)
Q Consensus 238 ~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~ 317 (579)
+.. ... .++.+.++|.+.++.++..|+.++..+..+++... -.-...++.|..++...++..+...+..|..++.
T Consensus 147 ~~~---~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 147 DLV---EDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP 221 (526)
T ss_dssp CCH---HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred HHH---HHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence 432 222 58999999999999999999999999911111100 1113344555666678899999999999988877
Q ss_pred ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHH
Q 047123 318 VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAI 397 (579)
Q Consensus 318 ~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL 397 (579)
.......- ...++.+..++++.++.+...++.++..+....+ .-..+++.|..++.+.+. .++..++..|
T Consensus 222 ~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~--nvr~~~L~~L 291 (526)
T PF01602_consen 222 MEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDP--NVRYIALDSL 291 (526)
T ss_dssp SSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSH--HHHHHHHHHH
T ss_pred CChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccc--hhehhHHHHH
Confidence 43322210 3456777788887778888888888888776433 235567888888885544 7888888888
Q ss_pred HHcccchhHHHHHhhcCcHHHHHHHHHh-cCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHH
Q 047123 398 SSLSLSDSAARILSSTTSFIIQLGEFIK-RGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAAT 476 (579)
Q Consensus 398 ~~L~~~~~~~~l~~~~~g~i~~L~~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~ 476 (579)
..++... ...+. . ....+..+. +.+..++..+..+|..++. +++...+ ++.|.+.+.+..+.+++..++
T Consensus 292 ~~l~~~~-~~~v~-~----~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~-~~n~~~I---l~eL~~~l~~~~d~~~~~~~i 361 (526)
T PF01602_consen 292 SQLAQSN-PPAVF-N----QSLILFFLLYDDDPSIRKKALDLLYKLAN-ESNVKEI---LDELLKYLSELSDPDFRRELI 361 (526)
T ss_dssp HHHCCHC-HHHHG-T----HHHHHHHHHCSSSHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHHC--HHHHHHHH
T ss_pred HHhhccc-chhhh-h----hhhhhheecCCCChhHHHHHHHHHhhccc-ccchhhH---HHHHHHHHHhccchhhhhhHH
Confidence 8888763 11111 1 111223444 7788888888888888873 3333333 344445452333567888888
Q ss_pred HHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhC
Q 047123 477 DAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG 527 (579)
Q Consensus 477 ~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~ 527 (579)
..++.++...+... ...+..+++++....+. .....+..+..+..
T Consensus 362 ~~I~~la~~~~~~~-----~~~v~~l~~ll~~~~~~-~~~~~~~~i~~ll~ 406 (526)
T PF01602_consen 362 KAIGDLAEKFPPDA-----EWYVDTLLKLLEISGDY-VSNEIINVIRDLLS 406 (526)
T ss_dssp HHHHHHHHHHGSSH-----HHHHHHHHHHHHCTGGG-CHCHHHHHHHHHHH
T ss_pred HHHHHHHhccCchH-----HHHHHHHHHhhhhcccc-ccchHHHHHHHHhh
Confidence 88888876432211 23456777777765555 34445555555543
No 36
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.18 E-value=8.1e-09 Score=113.16 Aligned_cols=335 Identities=17% Similarity=0.146 Sum_probs=234.1
Q ss_pred chhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhcc
Q 047123 156 HKQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSA 235 (579)
Q Consensus 156 ~~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~ 235 (579)
..+-....++.+...+.++++.+|..|+.++..+...+|+... .. .++.+.++|. ++++.++..|+.++..+ ..
T Consensus 108 ~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~---~~-~~~~l~~lL~-d~~~~V~~~a~~~l~~i-~~ 181 (526)
T PF01602_consen 108 TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE---DE-LIPKLKQLLS-DKDPSVVSAALSLLSEI-KC 181 (526)
T ss_dssp SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH---GG-HHHHHHHHTT-HSSHHHHHHHHHHHHHH-HC
T ss_pred ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH---HH-HHHHHhhhcc-CCcchhHHHHHHHHHHH-cc
Confidence 3444556788889999999999999999999999887666432 22 6899999998 99999999999999999 21
Q ss_pred ChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 047123 236 NDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNI 315 (579)
Q Consensus 236 ~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL 315 (579)
++.....+ -...+..|.+++...++-.+..+.+.|..++........ ....++.+..++++.++.+...++.++..+
T Consensus 182 ~~~~~~~~-~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~--~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 182 NDDSYKSL-IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDAD--KNRIIEPLLNLLQSSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp THHHHTTH-HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Ccchhhhh-HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhh--HHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 22221111 123355566666778999999999999998854322220 045678888999888889999999999988
Q ss_pred hcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHH
Q 047123 316 AAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALL 395 (579)
Q Consensus 316 s~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~ 395 (579)
...+. .-..+++.|+.++.+.++.++..++.+|..++...+ ..+ . .....+..+...++ ..++..++.
T Consensus 259 ~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~---~~v-~--~~~~~~~~l~~~~d-~~Ir~~~l~ 326 (526)
T PF01602_consen 259 SPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP---PAV-F--NQSLILFFLLYDDD-PSIRKKALD 326 (526)
T ss_dssp SSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH---HHH-G--THHHHHHHHHCSSS-HHHHHHHHH
T ss_pred hcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc---hhh-h--hhhhhhheecCCCC-hhHHHHHHH
Confidence 87665 333468899999999999999999999999988551 222 2 23333344453332 489999999
Q ss_pred HHHHcccchhHHHHHhhcCcHHHHHHHHH-hcCCHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHhccCCCCHhHHH
Q 047123 396 AISSLSLSDSAARILSSTTSFIIQLGEFI-KRGNVLLQQVSSSLLGNLS-ISDGNKRAVASCMGSLIKLMECPKPVGLQE 473 (579)
Q Consensus 396 aL~~L~~~~~~~~l~~~~~g~i~~L~~lL-~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~ 473 (579)
.|..++...+...+ +..|...+ +..+++++..+...+..++ ..+.....+ ++.+++++ ...+..+..
T Consensus 327 lL~~l~~~~n~~~I-------l~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~---v~~l~~ll-~~~~~~~~~ 395 (526)
T PF01602_consen 327 LLYKLANESNVKEI-------LDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWY---VDTLLKLL-EISGDYVSN 395 (526)
T ss_dssp HHHHH--HHHHHHH-------HHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHH---HHHHHHHH-HCTGGGCHC
T ss_pred HHhhcccccchhhH-------HHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHH---HHHHHHhh-hhccccccc
Confidence 99999988666554 44467777 4558889999999999998 333222211 67788888 444566677
Q ss_pred HHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhC
Q 047123 474 AATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG 527 (579)
Q Consensus 474 ~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~ 527 (579)
.+...+.++....+..+. ..+..|++.+..-.....+..+++++...+.
T Consensus 396 ~~~~~i~~ll~~~~~~~~-----~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~ 444 (526)
T PF01602_consen 396 EIINVIRDLLSNNPELRE-----KILKKLIELLEDISSPEALAAAIWILGEYGE 444 (526)
T ss_dssp HHHHHHHHHHHHSTTTHH-----HHHHHHHHHHTSSSSHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHhhcChhhhH-----HHHHHHHHHHHHhhHHHHHHHHHhhhcccCC
Confidence 777888888765444322 2367777777764433367777777776654
No 37
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=6.4e-08 Score=107.46 Aligned_cols=378 Identities=12% Similarity=0.130 Sum_probs=238.9
Q ss_pred HHHHHhccC-CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHH
Q 047123 166 DIFTRLQIG-GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVF 244 (579)
Q Consensus 166 ~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~ 244 (579)
.++..+++. .+.+|.+-++.+..+++..-.. + =.+.++.|.+-.+ ++++..|+.|+.+|..+.....+.-...+
T Consensus 83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~---WPell~~L~q~~~-S~~~~~rE~al~il~s~~~~~~~~~~~~~ 157 (1075)
T KOG2171|consen 83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-K---WPELLQFLFQSTK-SPNPSLRESALLILSSLPETFGNTLQPHL 157 (1075)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-c---hHHHHHHHHHHhc-CCCcchhHHHHHHHHhhhhhhccccchhH
Confidence 455555544 4567777788888887643221 1 1345666666667 89999999999999998872222111110
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-ccHHHHHh-cCcHHHHHH----HhcCCCHHHHHHHHHHHHHhhcC
Q 047123 245 EEGGLGPLLRILETGSMPLKEKAAIGVEAITTDP-ENAWAISA-YGGVSVLIE----AFRSGTALTQSHAVGAIRNIAAV 318 (579)
Q Consensus 245 ~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~-~~~~~i~~-~g~i~~Lv~----ll~~~~~~~~~~a~~aL~nLs~~ 318 (579)
....+.|.+-+.+++..++..+++++...+... .++...-. ...+|.++. .+..++.+.-..+..+|..+...
T Consensus 158 -~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~ 236 (1075)
T KOG2171|consen 158 -DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLES 236 (1075)
T ss_pred -HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhh
Confidence 122344445555556569999999999988433 33333332 234455554 44567777777888888877763
Q ss_pred hh--hHHHHHHcCCHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHh--cCcHHHHHHhhccCCC-------
Q 047123 319 ED--IKAALAEEGAVPVLVQSLTSS--SNLAQENAADCIATLAASGEYFRLLIIQ--ERGLQRLMHLIQDSTS------- 385 (579)
Q Consensus 319 ~~--~~~~l~~~g~v~~Lv~lL~~~--~~~v~~~a~~~L~~La~~~~~~r~~l~~--~g~i~~Lv~ll~~~~~------- 385 (579)
.. .+..+.+ ++...+....+. ++.+|..|+.+|..++..-+..++.... ...++.++.++.....
T Consensus 237 ~pk~l~~~l~~--ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~ 314 (1075)
T KOG2171|consen 237 EPKLLRPHLSQ--IIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNE 314 (1075)
T ss_pred chHHHHHHHHH--HHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccc
Confidence 32 2333333 555555555444 6789999999999998764332222222 3345666665532211
Q ss_pred -------ChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH-H
Q 047123 386 -------SIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC-M 456 (579)
Q Consensus 386 -------~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v 456 (579)
.......|.++|-.++.+=.-+.+.- -+++.+-.++.+.+..-|..+.++|..++ ...+......+. +
T Consensus 315 d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p---~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il 391 (1075)
T KOG2171|consen 315 DDLDEDDEETPYRAAEQALDRLALHLGGKQVLP---PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKIL 391 (1075)
T ss_pred cccccccccCcHHHHHHHHHHHHhcCChhhehH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 12356678888888887611111222 24566777789999999999999999999 555544444444 8
Q ss_pred HHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHH
Q 047123 457 GSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKR 536 (579)
Q Consensus 457 ~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~ 536 (579)
+..+..| .+.++.||.+|+.|++.++.+..---...-.+..++.|+..+++.....++..|++++.+++..-. +.
T Consensus 392 ~~Vl~~l-~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~----~~ 466 (1075)
T KOG2171|consen 392 PIVLNGL-NDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD----KS 466 (1075)
T ss_pred HHHHhhc-CCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc----HH
Confidence 9999999 888999999999999999987543222222467778899999887665588888888998876543 44
Q ss_pred HHH---cCchH-HHHhhhccCCchHHH
Q 047123 537 LVA---AGAYQ-HLQKLAETEVPGAKK 559 (579)
Q Consensus 537 i~~---~g~~~-~L~~L~~~~~~~ak~ 559 (579)
+++ .+.+. .+.-|..++.+..++
T Consensus 467 ~l~pYLd~lm~~~l~~L~~~~~~~v~e 493 (1075)
T KOG2171|consen 467 ILEPYLDGLMEKKLLLLLQSSKPYVQE 493 (1075)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence 443 22333 333355566665543
No 38
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.1e-07 Score=105.63 Aligned_cols=315 Identities=14% Similarity=0.115 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCC--CHHHHHHHHHHHHHh
Q 047123 159 DLVLFIRDIFTRL----QIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHH--QSSIREQAVLALSII 232 (579)
Q Consensus 159 ~~~~~v~~Lv~~L----~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~--~~~~~~~A~~aL~~L 232 (579)
..+..+|.++..+ +.|+.+.-..++.+|.+++...++..+-.. ...+..-++... +. +..+|..|+.+|..+
T Consensus 199 ~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l-~~ii~~~l~Ia~-n~~l~~~~R~~ALe~ivs~ 276 (1075)
T KOG2171|consen 199 KFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHL-SQIIQFSLEIAK-NKELENSIRHLALEFLVSL 276 (1075)
T ss_pred HHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHhh-cccccHHHHHHHHHHHHHH
Confidence 3455666666555 467877788999999999987776654433 223444455554 33 488999999999999
Q ss_pred hccChhhHHHHHhc--CCHHHHHHHHccCC----------------HHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHH
Q 047123 233 VSANDESRKIVFEE--GGLGPLLRILETGS----------------MPLKEKAAIGVEAITTDPENAWAISAYGGVSVLI 294 (579)
Q Consensus 233 a~~~~~~~~~i~~~--g~l~~Lv~lL~~~~----------------~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv 294 (579)
+..-+...+..... ..++.++..+.... ......|.++|-.++.+-..+.. -.-..+.+-
T Consensus 277 ~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v--~p~~~~~l~ 354 (1075)
T KOG2171|consen 277 SEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV--LPPLFEALE 354 (1075)
T ss_pred HHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhe--hHHHHHHHH
Confidence 88323332222222 24555555553321 11345566677777643211111 122345566
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhcCh--hhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc
Q 047123 295 EAFRSGTALTQSHAVGAIRNIAAVE--DIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERG 372 (579)
Q Consensus 295 ~ll~~~~~~~~~~a~~aL~nLs~~~--~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~ 372 (579)
.++++.+..-+.+++.+|..++... ..+..+ ..+++.++..+.+.++.||..|+.+++.++.+-...-+.-..+..
T Consensus 355 ~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l--~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l 432 (1075)
T KOG2171|consen 355 AMLQSTEWKERHAALLALSVIAEGCSDVMIGNL--PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERL 432 (1075)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH--HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhc
Confidence 6788999999999999998887632 222222 247788888899999999999999999999854332233334566
Q ss_pred HHHHHHhhccCCCChHHHHHHHHHHHHcccc---hhHHHHHhhcCcHHH-HHHHHHhcCCHHHHHHHHHHHHHhc--CCh
Q 047123 373 LQRLMHLIQDSTSSIVTVENALLAISSLSLS---DSAARILSSTTSFII-QLGEFIKRGNVLLQQVSSSLLGNLS--ISD 446 (579)
Q Consensus 373 i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~---~~~~~l~~~~~g~i~-~L~~lL~~~~~~v~~~A~~aL~~L~--~~~ 446 (579)
++.|+..+++... +.++.+|+.++.|+... +.....+. +.+. .|..+++++.+.+|+.++.+|...+ ...
T Consensus 433 ~~aL~~~ld~~~~-~rV~ahAa~al~nf~E~~~~~~l~pYLd---~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 433 PPALIALLDSTQN-VRVQAHAAAALVNFSEECDKSILEPYLD---GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred cHHHHHHhcccCc-hHHHHHHHHHHHHHHHhCcHHHHHHHHH---HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 7788888776654 58999999999999876 44455555 4666 5555678899999999999999998 344
Q ss_pred hhHHHHHHHHHHHHHhccCCCCHhHHH---HHHHHHHHhh
Q 047123 447 GNKRAVASCMGSLIKLMECPKPVGLQE---AATDAVLSLL 483 (579)
Q Consensus 447 ~~~~~i~~~v~~Lv~lL~~~~~~~v~~---~a~~aL~~L~ 483 (579)
....++..-+|.|.+.|.+.++.+.|. ...+++.-++
T Consensus 509 ~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 509 KFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA 548 (1075)
T ss_pred hhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence 455555555999999886655455444 4444444443
No 39
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=9.4e-08 Score=99.86 Aligned_cols=422 Identities=15% Similarity=0.137 Sum_probs=263.2
Q ss_pred cccchhHhhhhhhhhhhhhHHHHHh--ccCCcCcccccccCCCCCchhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 047123 113 MQSDLDIANTSLSNHLHDLDLLLRS--GVLHQSNAIVLSQPGPGSHKQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLL 190 (579)
Q Consensus 113 ~~s~~d~~~~~l~~~l~d~~~l~~~--gi~~~~~~~~~~~p~~~a~~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~ 190 (579)
.+...+-+-+.+-..++|.+-++|. |++-.. +++.-+. +.= ...++.|.++|.+.+.....-|..+|..+|
T Consensus 84 ~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITT---I~s~~~~--~~w--pelLp~L~~~L~s~d~n~~EgA~~AL~KIc 156 (885)
T KOG2023|consen 84 PSEVLDYIKSECLHGLGDASPLIRATVGIVITT---IASTGGL--QHW--PELLPQLCELLDSPDYNTCEGAFGALQKIC 156 (885)
T ss_pred ChHHHHHHHHHHHhhccCchHHHHhhhhheeee---eeccccc--ccc--hhHHHHHHHHhcCCcccccchhHHHHHHHH
Confidence 4445566777888999999999992 433221 0010000 111 236889999999999889999999999999
Q ss_pred ccChhhHHHHH----hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHh-cCCHHHHHHHHccCCHHHHH
Q 047123 191 KDDDKSAAVVA----KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFE-EGGLGPLLRILETGSMPLKE 265 (579)
Q Consensus 191 ~~~~~~~~~i~----~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~-~g~l~~Lv~lL~~~~~~v~~ 265 (579)
.++.+....-. -.-.+|.++++.+ ++++.+|..|+.++...-- .. ....+.. ...+..+..+-.+.+++||.
T Consensus 157 EDsa~~lds~~~~rpl~~mipkfl~f~~-h~spkiRs~A~~cvNq~i~-~~-~qal~~~iD~Fle~lFalanD~~~eVRk 233 (885)
T KOG2023|consen 157 EDSAQFLDSDVLTRPLNIMIPKFLQFFK-HPSPKIRSHAVGCVNQFII-IQ-TQALYVHIDKFLEILFALANDEDPEVRK 233 (885)
T ss_pred hhhHHHHhhhcccCchHHhHHHHHHHHh-CCChhHHHHHHhhhhheee-cC-cHHHHHHHHHHHHHHHHHccCCCHHHHH
Confidence 87765543311 1236889999999 9999999999999887655 21 1222222 23566777777778999999
Q ss_pred HHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHH--cCCHHHHHHHhcCCCH
Q 047123 266 KAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAE--EGAVPVLVQSLTSSSN 343 (579)
Q Consensus 266 ~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~--~g~v~~Lv~lL~~~~~ 343 (579)
+.|+++..|...-..+..-.-.++++.++...++.|..+--.||.....++..+-.+..+.. ...||.|++-+...+.
T Consensus 234 ~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~ 313 (885)
T KOG2023|consen 234 NVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDD 313 (885)
T ss_pred HHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccc
Confidence 99999999985433333223357888888888888888888999988888887754444432 3466666654421110
Q ss_pred --------------------------------------------------------HHHHHHHHHHHHHhcCChhhHHHH
Q 047123 344 --------------------------------------------------------LAQENAADCIATLAASGEYFRLLI 367 (579)
Q Consensus 344 --------------------------------------------------------~v~~~a~~~L~~La~~~~~~r~~l 367 (579)
.+|...+.+|--|+. +
T Consensus 314 D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan--------v 385 (885)
T KOG2023|consen 314 DIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN--------V 385 (885)
T ss_pred cHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH--------h
Confidence 123333333333322 1
Q ss_pred HhcCcHHHHHH----hhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123 368 IQERGLQRLMH----LIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS 443 (579)
Q Consensus 368 ~~~g~i~~Lv~----ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~ 443 (579)
.....++.++- .|.+... .+++.++-+++.++.+ ..+-++..-+..++.|+.+|.+..+-||...++.|.+.+
T Consensus 386 f~~elL~~l~PlLk~~L~~~~W--~vrEagvLAlGAIAEG-cM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys 462 (885)
T KOG2023|consen 386 FGDELLPILLPLLKEHLSSEEW--KVREAGVLALGAIAEG-CMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYS 462 (885)
T ss_pred hHHHHHHHHHHHHHHHcCcchh--hhhhhhHHHHHHHHHH-HhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhh
Confidence 22333444444 4445555 7899999999999886 111122221136788899999999999999999999998
Q ss_pred ---CChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCc---hhhhhHH
Q 047123 444 ---ISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKN---EALNKKF 517 (579)
Q Consensus 444 ---~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~---~~~~k~~ 517 (579)
.+++..+.+..-+..|++.+ -+++..||++||.|+.-+-... .+.-|+.|-.+|+.-. ...-++.
T Consensus 463 ~wv~~~~~~~~f~pvL~~ll~~l-lD~NK~VQEAAcsAfAtleE~A--------~~eLVp~l~~IL~~l~~af~kYQ~KN 533 (885)
T KOG2023|consen 463 KWVVQDSRDEYFKPVLEGLLRRL-LDSNKKVQEAACSAFATLEEEA--------GEELVPYLEYILDQLVFAFGKYQKKN 533 (885)
T ss_pred hhHhcCChHhhhHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHhc--------cchhHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444456666666666655 4667899999999998875321 1122333333333211 0101111
Q ss_pred ---HHHHHHHHhCCCC-hhHHHHHHHcCchHHHH-h--hhccCCchHHHHHHHHh
Q 047123 518 ---PVMVTAAVLGGGS-NGCRKRLVAAGAYQHLQ-K--LAETEVPGAKKVLQRLA 565 (579)
Q Consensus 518 ---av~~L~~L~~~~~-~~~r~~i~~~g~~~~L~-~--L~~~~~~~ak~~~~~l~ 565 (579)
.--++.+|+.+-. .-+.+..++- .+++|+ + ++..++.+.=-++||++
T Consensus 534 LlILYDAIgtlAdsvg~~Ln~~~Yiqi-LmPPLi~KW~~lsd~DKdLfPLLEClS 587 (885)
T KOG2023|consen 534 LLILYDAIGTLADSVGHALNKPAYIQI-LMPPLIEKWELLSDSDKDLFPLLECLS 587 (885)
T ss_pred eehHHHHHHHHHHHHHHhcCcHHHHHH-hccHHHHHHHhcCcccchHHHHHHHHH
Confidence 1223444543321 0023444443 455555 3 56777778888899887
No 40
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.09 E-value=9.1e-09 Score=104.48 Aligned_cols=218 Identities=18% Similarity=0.163 Sum_probs=165.7
Q ss_pred cCCHHHHHHHHHHHHHHhccChhhHHHHHh------hCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhc
Q 047123 173 IGGVEFKKKALESLLQLLKDDDKSAAVVAK------EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEE 246 (579)
Q Consensus 173 ~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~------~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~ 246 (579)
+.+.+.....+..+.++..+++.....+.. .....+++++++ .+|..++..|+..|..+.. ....+..-...
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~-~~D~~i~~~a~~iLt~Ll~-~~~~~~~~~~~ 145 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLD-RNDSFIQLKAAFILTSLLS-QGPKRSEKLVK 145 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHHHHHHHHHHHHT-STTT--HHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhc-CCCHHHHHHHHHHHHHHHH-cCCccccchHH
Confidence 578889999999999999999877777664 236888999999 8999999999999999987 44443333336
Q ss_pred CCHHHHHHHHccC----CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHh------c-CCCHHHHHHHHHHHHHh
Q 047123 247 GGLGPLLRILETG----SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAF------R-SGTALTQSHAVGAIRNI 315 (579)
Q Consensus 247 g~l~~Lv~lL~~~----~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll------~-~~~~~~~~~a~~aL~nL 315 (579)
+.++.++..+.+. +.+++..++.+|.+|...++.+..+.+.++++.++.++ . ..+.+++.+++.+++-|
T Consensus 146 ~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL 225 (312)
T PF03224_consen 146 EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL 225 (312)
T ss_dssp HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Confidence 6788888888863 45677999999999999999999999999999999999 2 23458999999999999
Q ss_pred hcChhhHHHHHHcCCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCChh-hHHHHHhcCcHHHHHHhhccCCCChHHHHH
Q 047123 316 AAVEDIKAALAEEGAVPVLVQSLTS-SSNLAQENAADCIATLAASGEY-FRLLIIQERGLQRLMHLIQDSTSSIVTVEN 392 (579)
Q Consensus 316 s~~~~~~~~l~~~g~v~~Lv~lL~~-~~~~v~~~a~~~L~~La~~~~~-~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~ 392 (579)
+.+++....+...+.|+.|+.+++. ..+.+...++.++.|+...++. ....++..|+++.+-.+....-.++++.+.
T Consensus 226 SF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 226 SFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp TTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred hcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 9999999999999999999999954 4678999999999999976653 677778888777777666655444555543
No 41
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.09 E-value=7.9e-08 Score=100.71 Aligned_cols=363 Identities=11% Similarity=0.074 Sum_probs=245.9
Q ss_pred HHHHHHHHHhcc--CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCC-HHHHHHHHHHHHHhhccChh
Q 047123 162 LFIRDIFTRLQI--GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQ-SSIREQAVLALSIIVSANDE 238 (579)
Q Consensus 162 ~~v~~Lv~~L~~--~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~-~~~~~~A~~aL~~La~~~~~ 238 (579)
..++.+..+++. +..+.+.+....+..+..+.......+.+.+..+.|+++|. .++ ..+.+..++++.++...++.
T Consensus 51 GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs-~sD~~~~le~~l~~lR~Ifet~~~ 129 (678)
T KOG1293|consen 51 GAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLS-ESDSLNVLEKTLRCLRTIFETSKY 129 (678)
T ss_pred cchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhc-CcchHhHHHHHHHHHHHHHhcccc
Confidence 457788888875 45677778888888888888899999999999999999999 887 88999999999999873322
Q ss_pred h--HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHH---
Q 047123 239 S--RKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIR--- 313 (579)
Q Consensus 239 ~--~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~--- 313 (579)
. .........+..+.-++..........-+....+++..++.+.....+|+.+.+.-++...+...|..+..+++
T Consensus 130 q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~ 209 (678)
T KOG1293|consen 130 QDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGD 209 (678)
T ss_pred cccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccc
Confidence 2 22233344555555555535555666666677778877788888888998888887777777888999999988
Q ss_pred HhhcCh-hhHHH----HHHcCCHH--HHHHHhcCCCHHHHHHHHHHHHHHhcCC-------------hhh----------
Q 047123 314 NIAAVE-DIKAA----LAEEGAVP--VLVQSLTSSSNLAQENAADCIATLAASG-------------EYF---------- 363 (579)
Q Consensus 314 nLs~~~-~~~~~----l~~~g~v~--~Lv~lL~~~~~~v~~~a~~~L~~La~~~-------------~~~---------- 363 (579)
++..++ ..... ..+.|+.+ .+.+++++++...+..++.|+.++...+ +..
T Consensus 210 ~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i 289 (678)
T KOG1293|consen 210 RILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCI 289 (678)
T ss_pred eeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhh
Confidence 666543 33222 33455555 3445556665555566666655553221 000
Q ss_pred ----------------------------HHHHHhcCcHHHHHHhhccC--------------------------------
Q 047123 364 ----------------------------RLLIIQERGLQRLMHLIQDS-------------------------------- 383 (579)
Q Consensus 364 ----------------------------r~~l~~~g~i~~Lv~ll~~~-------------------------------- 383 (579)
.....+...++..++++..+
T Consensus 290 ~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~ 369 (678)
T KOG1293|consen 290 VLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISL 369 (678)
T ss_pred eeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhH
Confidence 00000111112222221110
Q ss_pred ------------------CCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123 384 ------------------TSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS 443 (579)
Q Consensus 384 ------------------~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~ 443 (579)
..+......|+-++.+++.. .-+..+- +..+..+|++++..++..++..+..+|+|+.
T Consensus 370 ~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~--~~dv~~plvqll~dp~~~i~~~~lgai~NlV 447 (678)
T KOG1293|consen 370 KKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLK--RNDVAQPLVQLLMDPEIMIMGITLGAICNLV 447 (678)
T ss_pred HHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCc--cchhHHHHHHHhhCcchhHHHHHHHHHHHHH
Confidence 01223344445555555444 1111122 2378889999999999999999999999999
Q ss_pred -CChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcc-cHHHHHhhcCCCchhhhhHHHH
Q 047123 444 -ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEK-SVMRLMQMLDPKNEALNKKFPV 519 (579)
Q Consensus 444 -~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~-~i~~Lv~lL~~~~~~~~k~~av 519 (579)
.....+..|.+. |+.+..++ .+.+..+|..+.++|++++-...+...+....+ +-..++.+..+++.+ +++.+.
T Consensus 448 mefs~~kskfl~~ngId~l~s~~-~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~-Vqeq~f 525 (678)
T KOG1293|consen 448 MEFSNLKSKFLRNNGIDILESML-TDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWA-VQEQCF 525 (678)
T ss_pred hhcccHHHHHHHcCcHHHHHHHh-cCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHH-HHHHHH
Confidence 666778888777 99999999 888899999999999999977666544443333 344566777777777 899999
Q ss_pred HHHHHHhCCC
Q 047123 520 MVTAAVLGGG 529 (579)
Q Consensus 520 ~~L~~L~~~~ 529 (579)
..+.+|+++.
T Consensus 526 qllRNl~c~~ 535 (678)
T KOG1293|consen 526 QLLRNLTCNS 535 (678)
T ss_pred HHHHHhhcCc
Confidence 9999999874
No 42
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.07 E-value=2.1e-08 Score=101.80 Aligned_cols=226 Identities=15% Similarity=0.166 Sum_probs=162.2
Q ss_pred CcHHHHHHhhccC-CCHHHHHHHHHHHHHhhccChhhHHHHHh------cCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 047123 204 GNVGYLISLLDFH-HQSSIREQAVLALSIIVSANDESRKIVFE------EGGLGPLLRILETGSMPLKEKAAIGVEAITT 276 (579)
Q Consensus 204 g~v~~Lv~LL~~~-~~~~~~~~A~~aL~~La~~~~~~~~~i~~------~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~ 276 (579)
+.+..++.+|+.. ++.++....+..+..+..+++...+.+.. .....+++++++.++..++..++..|..|..
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3577777888744 67899999999999988856666666654 2378999999999999999999999999986
Q ss_pred CCccHHHHHhcCcHHHHHHHhcC----CCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHh-----cC--CCHHH
Q 047123 277 DPENAWAISAYGGVSVLIEAFRS----GTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSL-----TS--SSNLA 345 (579)
Q Consensus 277 ~~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL-----~~--~~~~v 345 (579)
.......-...+.++.++..+.+ .+...+..++.+|.+|...++.|..+.+.|+++.++.++ .+ .+..+
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 54443333335666888877765 345678999999999999999999999999999999999 22 24579
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-h--hHHHHHhhcCcHHHHHHH
Q 047123 346 QENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-D--SAARILSSTTSFIIQLGE 422 (579)
Q Consensus 346 ~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~--~~~~l~~~~~g~i~~L~~ 422 (579)
+.+++.|++.|+..+ .....+.+.+.++.|+++++.... +++...++.+|.||... . ....++.. |+++.+-.
T Consensus 215 ~Y~~ll~lWlLSF~~-~~~~~~~~~~~i~~L~~i~~~~~K-EKvvRv~la~l~Nl~~~~~~~~~~~mv~~--~~l~~l~~ 290 (312)
T PF03224_consen 215 QYQALLCLWLLSFEP-EIAEELNKKYLIPLLADILKDSIK-EKVVRVSLAILRNLLSKAPKSNIELMVLC--GLLKTLQN 290 (312)
T ss_dssp HHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHH--S-HHHHHHHHHHHHHTTSSSSTTHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHhcCH-HHHHHHhccchHHHHHHHHHhccc-chHHHHHHHHHHHHHhccHHHHHHHHHHc--cHHHHHHH
Confidence 999999999999854 557778888899999999988774 79999999999999988 3 67788887 66666655
Q ss_pred HHhc--CCHHHHH
Q 047123 423 FIKR--GNVLLQQ 433 (579)
Q Consensus 423 lL~~--~~~~v~~ 433 (579)
+... .|+++.+
T Consensus 291 L~~rk~~Dedl~e 303 (312)
T PF03224_consen 291 LSERKWSDEDLTE 303 (312)
T ss_dssp HHSS--SSHHHHH
T ss_pred HhcCCCCCHHHHH
Confidence 5533 3555544
No 43
>PTZ00429 beta-adaptin; Provisional
Probab=99.05 E-value=1.5e-06 Score=96.65 Aligned_cols=330 Identities=12% Similarity=0.062 Sum_probs=223.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
.+.++-+.|++++...+..|+..+...+..+.+. ..+.+..++++. +.+.+++.-..-.+.+.+..+++.. .
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~-S~d~elKKLvYLYL~~ya~~~pela-l 104 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAP-STDLELKKLVYLYVLSTARLQPEKA-L 104 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcccChHHH-H
Confidence 4677778888888888999988887776444322 123556677888 8899999988888888887343322 1
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhH
Q 047123 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIK 322 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~ 322 (579)
+ ++..|.+=+.+.++.+|..|.++++++-... ... -.+..+.+.+.+.++.++..|+.++.++-....
T Consensus 105 L----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-i~e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-- 172 (746)
T PTZ00429 105 L----AVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-VLE-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-- 172 (746)
T ss_pred H----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-HHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--
Confidence 2 3778888888899999999999999876521 111 134667778888999999999999999865322
Q ss_pred HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHccc
Q 047123 323 AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSL 402 (579)
Q Consensus 323 ~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~ 402 (579)
..+.+.|.++.|..++.+.++.+..+|+.+|..+...++.. .-...+.+..|+..+...++ ..+.....+|....-
T Consensus 173 elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~L~e~~E--W~Qi~IL~lL~~y~P 248 (746)
T PTZ00429 173 QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYHLPECNE--WGQLYILELLAAQRP 248 (746)
T ss_pred ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHHhhcCCh--HHHHHHHHHHHhcCC
Confidence 23345678889999999999999999999999998654331 11234445666666655554 666666666644221
Q ss_pred chhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--ChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHH
Q 047123 403 SDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI--SDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAV 479 (579)
Q Consensus 403 ~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~--~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL 479 (579)
.+... . . ..+..+...|++.++.|...|++++.++.. +++..+.+... ..+|+.++ +.+++++..+...+
T Consensus 249 ~~~~e--~-~--~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~--ss~~eiqyvaLr~I 321 (746)
T PTZ00429 249 SDKES--A-E--TLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLS--RRDAETQYIVCKNI 321 (746)
T ss_pred CCcHH--H-H--HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh--CCCccHHHHHHHHH
Confidence 11111 1 2 467778888889999999999999999983 34544444433 46777776 34678999988888
Q ss_pred HHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123 480 LSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS 530 (579)
Q Consensus 480 ~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~ 530 (579)
.-+....+ .++.. -+..+.-..+ ++..+|...+.+|..|+...+
T Consensus 322 ~~i~~~~P---~lf~~--~~~~Ff~~~~--Dp~yIK~~KLeIL~~Lane~N 365 (746)
T PTZ00429 322 HALLVIFP---NLLRT--NLDSFYVRYS--DPPFVKLEKLRLLLKLVTPSV 365 (746)
T ss_pred HHHHHHCH---HHHHH--HHHhhhcccC--CcHHHHHHHHHHHHHHcCccc
Confidence 77776442 22221 1222222222 223368888888888876554
No 44
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.2e-08 Score=106.23 Aligned_cols=318 Identities=14% Similarity=0.071 Sum_probs=210.3
Q ss_pred hCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHh----cCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC
Q 047123 203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFE----EGGLGPLLRILETGSMPLKEKAAIGVEAITTDP 278 (579)
Q Consensus 203 ~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~----~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~ 278 (579)
..++|.|+++|+ +++...+|-|..+|..++.++.+.-+.=+. .-.+|.++++.+++++.+|..|..++....-..
T Consensus 127 pelLp~L~~~L~-s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 127 PELLPQLCELLD-SPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hhHHHHHHHHhc-CCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC
Confidence 457899999999 999999999999999999954443222111 136899999999999999999999988766432
Q ss_pred ccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123 279 ENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA 358 (579)
Q Consensus 279 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~ 358 (579)
.....+.=...++.|+.+-.+.++.+|++.|.++..|......+..---.++|+-++...++.++++.-.|++....+|.
T Consensus 206 ~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 206 TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 22222222446788888888899999999999998886643222211123466666666678888999999999999998
Q ss_pred CChhhHHHHHh--cCcHHHHHHhhccCCCCh-------------------------------------------------
Q 047123 359 SGEYFRLLIIQ--ERGLQRLMHLIQDSTSSI------------------------------------------------- 387 (579)
Q Consensus 359 ~~~~~r~~l~~--~g~i~~Lv~ll~~~~~~~------------------------------------------------- 387 (579)
.. -.+..+.. ...+|.|++-+.....+.
T Consensus 286 qp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 286 QP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred Cc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 65 44444433 456666665332211100
Q ss_pred -----HHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHH
Q 047123 388 -----VTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASCMGSLI 460 (579)
Q Consensus 388 -----~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~v~~Lv 460 (579)
.+|...+.+|--|+.- -...++.. .++.|-+.|.+.+-.+|+.+.-|++.++ ........+.+-+|.|+
T Consensus 365 ~~~dWNLRkCSAAaLDVLanv-f~~elL~~---l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~ 440 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLANV-FGDELLPI---LLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLL 440 (885)
T ss_pred ccccccHhhccHHHHHHHHHh-hHHHHHHH---HHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHH
Confidence 1222222222222211 11112221 3444444556667789999999999998 33344444444499999
Q ss_pred HhccCCCCHhHHHHHHHHHHHhhcC--CcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123 461 KLMECPKPVGLQEAATDAVLSLLTV--RSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS 530 (579)
Q Consensus 461 ~lL~~~~~~~v~~~a~~aL~~L~~~--~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~ 530 (579)
.+| +++.+-||.-.|+.|+..+.- ...+.++. ...+..|++.+-+++.. ++++|+++++.|-....
T Consensus 441 ~~L-~DKkplVRsITCWTLsRys~wv~~~~~~~~f--~pvL~~ll~~llD~NK~-VQEAAcsAfAtleE~A~ 508 (885)
T KOG2023|consen 441 SLL-DDKKPLVRSITCWTLSRYSKWVVQDSRDEYF--KPVLEGLLRRLLDSNKK-VQEAACSAFATLEEEAG 508 (885)
T ss_pred HHh-ccCccceeeeeeeeHhhhhhhHhcCChHhhh--HHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHhcc
Confidence 999 888999999999999888642 12233333 23456666666667777 89999999988865543
No 45
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.02 E-value=1.1e-07 Score=98.49 Aligned_cols=274 Identities=12% Similarity=0.110 Sum_probs=197.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCC-CHHHHHHHHHHHHHhhccChhhHHHH
Q 047123 165 RDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHH-QSSIREQAVLALSIIVSANDESRKIV 243 (579)
Q Consensus 165 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~-~~~~~~~A~~aL~~La~~~~~~~~~i 243 (579)
..++.+|+.++.-....|+..|..+...++.........-....|...++ ++ +...+..++.+|..|.. .+++|..+
T Consensus 104 ~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~-~~~~~~~~~~~v~~L~~LL~-~~~~R~~f 181 (429)
T cd00256 104 EPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLN-NITNNDYVQTAARCLQMLLR-VDEYRFAF 181 (429)
T ss_pred HHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhh-ccCCcchHHHHHHHHHHHhC-CchHHHHH
Confidence 45566788888889999999999997654433222222224556777776 54 47888899999999999 99999999
Q ss_pred HhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCh-
Q 047123 244 FEEGGLGPLLRILETG--SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSG-TALTQSHAVGAIRNIAAVE- 319 (579)
Q Consensus 244 ~~~g~l~~Lv~lL~~~--~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLs~~~- 319 (579)
.+.+++++|+.+|+.. +...+..++-+++-|+.+++........+.|+.|+++++.. -.++.+-++.+|+|+...+
T Consensus 182 ~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~ 261 (429)
T cd00256 182 VLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRV 261 (429)
T ss_pred HHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Confidence 9999999999999874 56789999999999999888777787899999999999875 4578889999999998732
Q ss_pred ------hhHHHHHHcCCHHHHHHHhcC--CCHHHHHHHH-------HHHHHHhcCChhhH--------------------
Q 047123 320 ------DIKAALAEEGAVPVLVQSLTS--SSNLAQENAA-------DCIATLAASGEYFR-------------------- 364 (579)
Q Consensus 320 ------~~~~~l~~~g~v~~Lv~lL~~--~~~~v~~~a~-------~~L~~La~~~~~~r-------------------- 364 (579)
.....|++.|..+.+-.+-.. .++++.+..- ..+..+++.++...
T Consensus 262 ~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~ 341 (429)
T cd00256 262 DREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWR 341 (429)
T ss_pred ccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHH
Confidence 234567777776655444432 3454433322 22233333222111
Q ss_pred ---HHHHhc--CcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHH-HHhhcCcHHHHHHHHHhcCCHHHHHHHHH
Q 047123 365 ---LLIIQE--RGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAAR-ILSSTTSFIIQLGEFIKRGNVLLQQVSSS 437 (579)
Q Consensus 365 ---~~l~~~--g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~-l~~~~~g~i~~L~~lL~~~~~~v~~~A~~ 437 (579)
..+-++ ..+..|+++++.+++ +.....||.=|+.++.. +..+. +-.. |+-..+.+++.+.+++|+.+|..
T Consensus 342 EN~~kf~~~~~~llk~L~~iL~~s~d-~~~laVAc~Dige~vr~~P~gr~i~~~l--g~K~~vM~Lm~h~d~~Vr~eAL~ 418 (429)
T cd00256 342 ENADRLNEKNYELLKILIHLLETSVD-PIILAVACHDIGEYVRHYPRGKDVVEQL--GGKQRVMRLLNHEDPNVRYEALL 418 (429)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCC-cceeehhhhhHHHHHHHCccHHHHHHHc--CcHHHHHHHhcCCCHHHHHHHHH
Confidence 122222 245888888865443 46778888889998887 44444 4445 88889999999999999999999
Q ss_pred HHHHhc
Q 047123 438 LLGNLS 443 (579)
Q Consensus 438 aL~~L~ 443 (579)
++..|-
T Consensus 419 avQklm 424 (429)
T cd00256 419 AVQKLM 424 (429)
T ss_pred HHHHHH
Confidence 988774
No 46
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.8e-06 Score=92.20 Aligned_cols=318 Identities=19% Similarity=0.170 Sum_probs=240.1
Q ss_pred HHHHHHHHHhccCC-HHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccC-CCHHHHHHHHHHHHHhhccChh-
Q 047123 162 LFIRDIFTRLQIGG-VEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFH-HQSSIREQAVLALSIIVSANDE- 238 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~-~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~-~~~~~~~~A~~aL~~La~~~~~- 238 (579)
..|+.|+.++.+.. .+.|+.|+..|..+++ +|+..+...| +++|++.|+.+ .|+++...++..+.++.. +++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~-~dd~ 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTS-HDDS 96 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHh-cCcc
Confidence 37999999998764 6889999999999974 6777776665 78888888623 369999999999999887 442
Q ss_pred ------hH----------HHH-HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC--CCccHHHHHh-cCcHHHHHHHhc
Q 047123 239 ------SR----------KIV-FEEGGLGPLLRILETGSMPLKEKAAIGVEAITT--DPENAWAISA-YGGVSVLIEAFR 298 (579)
Q Consensus 239 ------~~----------~~i-~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~--~~~~~~~i~~-~g~i~~Lv~ll~ 298 (579)
.+ +.+ ...+-|..++..++..+..||..+...|.+|-. ..+.+..+.. .-+|..|+.+|.
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 11 223 245789999999999999999999999999874 3467777766 459999999999
Q ss_pred CCCHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhcCC--C--HHHHHHHHHHHHHHhcCChhhHHHHHhcCcH
Q 047123 299 SGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSS--S--NLAQENAADCIATLAASGEYFRLLIIQERGL 373 (579)
Q Consensus 299 ~~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~~~--~--~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i 373 (579)
+....+|-.++..|..+.. ++.+++-++-++++..|+.++... . --|.+.|+..|.||-..+...+..+.+.+.+
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i 256 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI 256 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence 9999999999999999998 455566666789999999999532 2 2488999999999998888888888899999
Q ss_pred HHHHHhhccCC--------CCh---HHHHHHHHHHHHcccc--------hhHHHHHhhcCcHHHHHHHHHhcC--CHHHH
Q 047123 374 QRLMHLIQDST--------SSI---VTVENALLAISSLSLS--------DSAARILSSTTSFIIQLGEFIKRG--NVLLQ 432 (579)
Q Consensus 374 ~~Lv~ll~~~~--------~~~---~~~~~A~~aL~~L~~~--------~~~~~l~~~~~g~i~~L~~lL~~~--~~~v~ 432 (579)
+.|.++|.... .+. .....++.+++.+... .+...+... +.+..|..++-+. ..+++
T Consensus 257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss--~ll~~Lc~il~~~~vp~dIl 334 (970)
T KOG0946|consen 257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSS--HLLDVLCTILMHPGVPADIL 334 (970)
T ss_pred HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc--chHHHHHHHHcCCCCcHhHH
Confidence 99997764321 111 1223345555665553 223455666 7788777777554 55888
Q ss_pred HHHHHHHHHhc-CChhhHHHHHHH------------HHHHHHhccCCCCHhHHHHHHHHHHHhhcCC
Q 047123 433 QVSSSLLGNLS-ISDGNKRAVASC------------MGSLIKLMECPKPVGLQEAATDAVLSLLTVR 486 (579)
Q Consensus 433 ~~A~~aL~~L~-~~~~~~~~i~~~------------v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~ 486 (579)
..+.-++.+.. .+..++..|... +-.++.+.....+...|.++..++.++....
T Consensus 335 tesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN 401 (970)
T KOG0946|consen 335 TESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN 401 (970)
T ss_pred HHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence 89999999998 777888888876 2234445534557888999999988887654
No 47
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.98 E-value=5.2e-07 Score=90.28 Aligned_cols=343 Identities=15% Similarity=0.111 Sum_probs=237.9
Q ss_pred HHHHHHHHHhccC-CHHHHHHHHHHHHHHhccChhhHHHHH------hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc
Q 047123 162 LFIRDIFTRLQIG-GVEFKKKALESLLQLLKDDDKSAAVVA------KEGNVGYLISLLDFHHQSSIREQAVLALSIIVS 234 (579)
Q Consensus 162 ~~v~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~------~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~ 234 (579)
.++-.++.++..- .++...-.+..+.++.+++......+. ..-.-...+.+|. ..+.-+.+.+.+++..++.
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~-r~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLN-RQDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHh-cCChHHHHHHHHHHHHHHH
Confidence 3677888888654 466677778888888877765544443 2234677889998 8888999989999998887
Q ss_pred cChhhHHHHHhcC-CHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcC--CCHHHHHHHHH
Q 047123 235 ANDESRKIVFEEG-GLGPLLRILET-GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRS--GTALTQSHAVG 310 (579)
Q Consensus 235 ~~~~~~~~i~~~g-~l~~Lv~lL~~-~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~--~~~~~~~~a~~ 310 (579)
...++-...+-. ...-|-.++.+ .+++-...++++|..+...++.|..+...+|+..++..+.+ .+..+|.+.+-
T Consensus 144 -~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsif 222 (442)
T KOG2759|consen 144 -FGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIF 222 (442)
T ss_pred -hccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHH
Confidence 433332211111 12234444444 46777888999999999999999999999999999998843 46689999999
Q ss_pred HHHHhhcChhhHHHHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCh------hhHHHHHhcCcHHHHHHhhccC
Q 047123 311 AIRNIAAVEDIKAALAEEGAVPVLVQSLTSS-SNLAQENAADCIATLAASGE------YFRLLIIQERGLQRLMHLIQDS 383 (579)
Q Consensus 311 aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~~La~~~~------~~r~~l~~~g~i~~Lv~ll~~~ 383 (579)
|++-|+.++...+.+..-+.|+.|..+++.. -+.|..-++.++.|+....+ .....++..++.+.+-.+-+..
T Consensus 223 ciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rk 302 (442)
T KOG2759|consen 223 CIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERK 302 (442)
T ss_pred HHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcC
Confidence 9999999999888888889999999999654 46788999999999987664 2335566667666665555444
Q ss_pred CCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc---------CChhhHHHHHH
Q 047123 384 TSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS---------ISDGNKRAVAS 454 (579)
Q Consensus 384 ~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~---------~~~~~~~~i~~ 454 (579)
-+++++... +..|... +..-++-|.+.+.-..+ --.+.|. ...++...+.+
T Consensus 303 ysDEDL~~d----i~~L~e~-------------L~~svq~LsSFDeY~sE---l~sG~L~WSP~Hk~e~FW~eNa~rlne 362 (442)
T KOG2759|consen 303 YSDEDLVDD----IEFLTEK-------------LKNSVQDLSSFDEYKSE---LRSGRLEWSPVHKSEKFWRENADRLNE 362 (442)
T ss_pred CCcHHHHHH----HHHHHHH-------------HHHHHHhhccHHHHHHH---HHhCCcCCCccccccchHHHhHHHHhh
Confidence 443333322 2222211 00001111111110000 0011122 11245555555
Q ss_pred H----HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhC
Q 047123 455 C----MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG 527 (579)
Q Consensus 455 ~----v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~ 527 (579)
. +..|+++|+.+.++.+...||-=++...+..+.-+.++.+-||-..++++|..++++ ++..|+.++..|-.
T Consensus 363 nnyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~-Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 363 NNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPE-VRYHALLAVQKLMV 438 (442)
T ss_pred ccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCch-HHHHHHHHHHHHHh
Confidence 5 889999997777788889999999999999888888888899999999999999999 88888887776654
No 48
>PTZ00429 beta-adaptin; Provisional
Probab=98.95 E-value=4e-06 Score=93.33 Aligned_cols=256 Identities=16% Similarity=0.134 Sum_probs=180.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH
Q 047123 161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR 240 (579)
Q Consensus 161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~ 240 (579)
.+...+.+..+++.+.+.|.-.--.+..++..+++.... .++.|.+=+. ++++.+|-.|++.++.+.. ++..
T Consensus 67 S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~-d~Np~IRaLALRtLs~Ir~--~~i~ 138 (746)
T PTZ00429 67 SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTT-NSSPVVRALAVRTMMCIRV--SSVL 138 (746)
T ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcC-CCCHHHHHHHHHHHHcCCc--HHHH
Confidence 346778888999999999999988888888766654322 3677888888 8999999999999998866 1222
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChh
Q 047123 241 KIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVED 320 (579)
Q Consensus 241 ~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~ 320 (579)
+ -.+.++.+.+.+.++.||..|+.++.++-...+ ..+...|.++.|.+++.+.++.++.+|+.+|..+.....
T Consensus 139 e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 139 E-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGS 211 (746)
T ss_pred H-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCc
Confidence 2 236677888888999999999999999874222 234456788899999999999999999999999976432
Q ss_pred hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHc
Q 047123 321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSL 400 (579)
Q Consensus 321 ~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L 400 (579)
..- -...+.+..++..+..-++-.|...+.+|......++. . ....+..+...+++.++ .+.-.|++++.++
T Consensus 212 ~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~---e--~~~il~~l~~~Lq~~N~--AVVl~Aik~il~l 283 (746)
T PTZ00429 212 EKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKE---S--AETLLTRVLPRMSHQNP--AVVMGAIKVVANL 283 (746)
T ss_pred hhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcH---H--HHHHHHHHHHHhcCCCH--HHHHHHHHHHHHh
Confidence 221 12344566677777777788888888887654322211 1 13456667777777665 7888999999988
Q ss_pred ccc---hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123 401 SLS---DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS 443 (579)
Q Consensus 401 ~~~---~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~ 443 (579)
... +....+.. .....++.+ .+.++++|..+...|..+.
T Consensus 284 ~~~~~~~~~~~~~~---rl~~pLv~L-~ss~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 284 ASRCSQELIERCTV---RVNTALLTL-SRRDAETQYIVCKNIHALL 325 (746)
T ss_pred cCcCCHHHHHHHHH---HHHHHHHHh-hCCCccHHHHHHHHHHHHH
Confidence 764 11122221 133445555 4567788888777776665
No 49
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.1e-07 Score=93.84 Aligned_cols=185 Identities=21% Similarity=0.247 Sum_probs=157.2
Q ss_pred ccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHH
Q 047123 172 QIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGP 251 (579)
Q Consensus 172 ~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~ 251 (579)
++.+.+.+..|+.-|..++. +-++...++..|+..+++.+++ +++..+|+.|+++|+..+.++|.++..+++.|+++.
T Consensus 93 ~s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~-~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLE-NSDAELRELAARVIGTAVQNNPKSQEQVIELGALSK 170 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhc-CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence 45688999999999999984 5678888899999999999999 999999999999999999989999999999999999
Q ss_pred HHHHHccC-CHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcC--CCHHHHHHHHHHHHHhhc-ChhhHHHHH
Q 047123 252 LLRILETG-SMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRS--GTALTQSHAVGAIRNIAA-VEDIKAALA 326 (579)
Q Consensus 252 Lv~lL~~~-~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLs~-~~~~~~~l~ 326 (579)
|+..|.+. +..++..|..+++.|-. ++.....|...+|...|...+++ .+..++..++..+..+.. ....+..+.
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~ 250 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS 250 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 99999875 67788999999999995 66788888888999999999998 566788889888888876 344444555
Q ss_pred HcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123 327 EEGAVPVLVQSLTSSSNLAQENAADCIATLAA 358 (579)
Q Consensus 327 ~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~ 358 (579)
..+....++.+....+..+.+.++.++..+..
T Consensus 251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 251 SLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 66777777777777788888888887776654
No 50
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=3.7e-06 Score=89.82 Aligned_cols=278 Identities=16% Similarity=0.227 Sum_probs=213.1
Q ss_pred cHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhcCCCc---
Q 047123 205 NVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETG--SMPLKEKAAIGVEAITTDPE--- 279 (579)
Q Consensus 205 ~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~aa~~L~~Ls~~~~--- 279 (579)
.|+.|+.-+..+.-.+-|..|++.|-.+++ .+|..+...| +++|++.|+.. ++++...+..++.++..+++
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 366677666524447889999999999998 8888887665 99999999875 78899999999999885442
Q ss_pred ----c----------HHHHH-hcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc--ChhhHHHHH-HcCCHHHHHHHhcCC
Q 047123 280 ----N----------AWAIS-AYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA--VEDIKAALA-EEGAVPVLVQSLTSS 341 (579)
Q Consensus 280 ----~----------~~~i~-~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~--~~~~~~~l~-~~g~v~~Lv~lL~~~ 341 (579)
. ...+. ..+-|..|+..+...|-.+|..++..+.++-. ..+.+..+. .--+|..++.+|.+.
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds 178 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS 178 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh
Confidence 1 12233 36788999999999999999999999999865 455666655 456899999999999
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCC--CChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHH
Q 047123 342 SNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDST--SSIVTVENALLAISSLSLS--DSAARILSSTTSFI 417 (579)
Q Consensus 342 ~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~--~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i 417 (579)
.+.+|..++-.|..+..+++..+..++=+++...|..++.... +..-+.+.|...|.||-.+ .+..-+.+. +.+
T Consensus 179 rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~--~~i 256 (970)
T KOG0946|consen 179 REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREG--SYI 256 (970)
T ss_pred hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcc--ccH
Confidence 9999999999999999999888888888999999999997653 2225788999999999987 778889999 999
Q ss_pred HHHHHHHhc---CCH--------HHH--HHHHHHHHHhc--CCh-----hhHHHHHHH--HHHHHHhccCC-CCHhHHHH
Q 047123 418 IQLGEFIKR---GNV--------LLQ--QVSSSLLGNLS--ISD-----GNKRAVASC--MGSLIKLMECP-KPVGLQEA 474 (579)
Q Consensus 418 ~~L~~lL~~---~~~--------~v~--~~A~~aL~~L~--~~~-----~~~~~i~~~--v~~Lv~lL~~~-~~~~v~~~ 474 (579)
++|.++|.. ++. .++ ..++.+++.+. .++ .+++.+... +..|+.++-+. -+.+++-.
T Consensus 257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlte 336 (970)
T KOG0946|consen 257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTE 336 (970)
T ss_pred HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHH
Confidence 999988742 231 122 35566666665 222 233455555 88899877222 47888988
Q ss_pred HHHHHHHhhcCCcc
Q 047123 475 ATDAVLSLLTVRSN 488 (579)
Q Consensus 475 a~~aL~~L~~~~~~ 488 (579)
+.-++.+..+....
T Consensus 337 siitvAevVRgn~~ 350 (970)
T KOG0946|consen 337 SIITVAEVVRGNAR 350 (970)
T ss_pred HHHHHHHHHHhchH
Confidence 88888888876543
No 51
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=5.4e-07 Score=89.05 Aligned_cols=183 Identities=21% Similarity=0.196 Sum_probs=159.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHH
Q 047123 259 GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQS 337 (579)
Q Consensus 259 ~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~l 337 (579)
.+.+-++.|..-|..+..+-+|...+...||+.+++..+++.+..+++.|+++|...+. +|..+..+.+.|+.+.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 36778889999999999999999999999999999999999999999999999999987 78889999999999999999
Q ss_pred hcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcC
Q 047123 338 LTSS-SNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTT 414 (579)
Q Consensus 338 L~~~-~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~ 414 (579)
+.+. +..++.+|+.++..+...++.....+...++...|...+.+.+.+...+..++..+..|... .....+-..
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~-- 252 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL-- 252 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh--
Confidence 9654 45788999999999999888888899998889999999999765568999999999999887 334444445
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123 415 SFIIQLGEFIKRGNVLLQQVSSSLLGNLS 443 (579)
Q Consensus 415 g~i~~L~~lL~~~~~~v~~~A~~aL~~L~ 443 (579)
++...+..+....+.++.+.+..++..+.
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 77778888888889999999988877766
No 52
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=2.8e-06 Score=81.74 Aligned_cols=292 Identities=16% Similarity=0.149 Sum_probs=191.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHc
Q 047123 249 LGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEE 328 (579)
Q Consensus 249 l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~ 328 (579)
+..++.++.+.++.++..|...+..++..+-..+.-.+.-.++.+.+++...++ -+.|+.+|.|++..+..+..+.+.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 446788999999999999999999999762222222234577889999887766 678999999999999999998876
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-c----CcHHHHHH-hhccCCCChHHHHHHHHHHHHccc
Q 047123 329 GAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQ-E----RGLQRLMH-LIQDSTSSIVTVENALLAISSLSL 402 (579)
Q Consensus 329 g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~-~----g~i~~Lv~-ll~~~~~~~~~~~~A~~aL~~L~~ 402 (579)
.+..++..+.+.........+..|.|++..+......+.. . .++..++. +.+.+.....--.+.+-.+.||+.
T Consensus 83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~ 161 (353)
T KOG2973|consen 83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ 161 (353)
T ss_pred -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence 7777788777665677888999999999987665544433 1 34444444 444333222344566778888888
Q ss_pred c-hhHHHHHhhcCcHHHHHHHHHhcCCHHHH-HHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHH
Q 047123 403 S-DSAARILSSTTSFIIQLGEFIKRGNVLLQ-QVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAV 479 (579)
Q Consensus 403 ~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~-~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL 479 (579)
. ..+.-+.+.+ .+...-+.-+.+.+..+| ...+..|.|.|....+...+... +..|..+|
T Consensus 162 ~~~gR~l~~~~k-~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iL---------------- 224 (353)
T KOG2973|consen 162 FEAGRKLLLEPK-RFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAIL---------------- 224 (353)
T ss_pred hhhhhhHhcchh-hhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHH----------------
Confidence 7 4455555552 122222222334555666 46678999999666655543333 33333322
Q ss_pred HHhhcCCcchhHHHhhcccHHHHHhhcCCC---ch-hhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhcc-CC
Q 047123 480 LSLLTVRSNRKELVRDEKSVMRLMQMLDPK---NE-ALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAET-EV 554 (579)
Q Consensus 480 ~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~---~~-~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~-~~ 554 (579)
.-|+...+--.+ |...++.=+|+|... ++ ..+++..+-+|.-|+.+.. +|+.+.+.|+.+.+..|=+. ++
T Consensus 225 lPlagpee~sEE---dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~--GRe~lR~kgvYpilRElhk~e~d 299 (353)
T KOG2973|consen 225 LPLAGPEELSEE---DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA--GREVLRSKGVYPILRELHKWEED 299 (353)
T ss_pred hhcCCccccCHH---HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH--hHHHHHhcCchHHHHHHhcCCCc
Confidence 222221110011 112333334777532 11 1288899999999999999 99999999999999988655 46
Q ss_pred chHHHHHHHHh
Q 047123 555 PGAKKVLQRLA 565 (579)
Q Consensus 555 ~~ak~~~~~l~ 565 (579)
+++.++.+++.
T Consensus 300 ed~~~ace~vv 310 (353)
T KOG2973|consen 300 EDIREACEQVV 310 (353)
T ss_pred HHHHHHHHHHH
Confidence 78888888765
No 53
>PF05536 Neurochondrin: Neurochondrin
Probab=98.75 E-value=1.1e-05 Score=87.56 Aligned_cols=378 Identities=15% Similarity=0.106 Sum_probs=237.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhh---HHHHHhhCcHHHHHHhhccC-------CCHHHHHHHHHHHHHh
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKS---AAVVAKEGNVGYLISLLDFH-------HQSSIREQAVLALSII 232 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~---~~~i~~~g~v~~Lv~LL~~~-------~~~~~~~~A~~aL~~L 232 (579)
.+...+.+|+..+.+.|..++.-+..++..++.. ++.|.+.=+.+.|-+||. + +....+.-|+.+|..+
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~-t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLR-TGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhc-CCCCCCCCCHHHHHHHHHHHHHHH
Confidence 5788999999999888889999999999877743 334666666788888998 6 2356777899999999
Q ss_pred hccChhhHHHHHhcCCHHHHHHHHccCCH-HHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHH
Q 047123 233 VSANDESRKIVFEEGGLGPLLRILETGSM-PLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGA 311 (579)
Q Consensus 233 a~~~~~~~~~i~~~g~l~~Lv~lL~~~~~-~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~a 311 (579)
+. .|+....---.+-||.|++++.+.+. .+...+..+|..++.+++.+..+.+.|+++.|++.+.+ .+...+.+..+
T Consensus 85 ~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 85 CR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred cC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 99 87775333334679999999988877 89999999999999999999999999999999999887 55668889999
Q ss_pred HHHhhcChhhHH---H-HHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh-HHHHHhcC----cHHHHHHhhcc
Q 047123 312 IRNIAAVEDIKA---A-LAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF-RLLIIQER----GLQRLMHLIQD 382 (579)
Q Consensus 312 L~nLs~~~~~~~---~-l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~-r~~l~~~g----~i~~Lv~ll~~ 382 (579)
+.++........ . -.-...++.+-..+.......+...+..|..+-...+.. ........ ....+..++.+
T Consensus 163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 988866322110 0 001123445555555444556667788888776543210 11111122 22344445555
Q ss_pred CCCChHHHHHHHHHHHHcccchhHHHHHhhc----CcHHHHHHHHH--------hc----CC-H-------------HHH
Q 047123 383 STSSIVTVENALLAISSLSLSDSAARILSST----TSFIIQLGEFI--------KR----GN-V-------------LLQ 432 (579)
Q Consensus 383 ~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~----~g~i~~L~~lL--------~~----~~-~-------------~v~ 432 (579)
... +..|..+......|...-..+-+.... ..+...++++. .. .+ + .+-
T Consensus 243 r~~-~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~il 321 (543)
T PF05536_consen 243 RLT-PSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSIL 321 (543)
T ss_pred CCC-HHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHHH
Confidence 543 355666655555554431111111110 02333333331 11 11 1 111
Q ss_pred HHHHHHHHHhcC------Chh----hHHHHHHHHHHHHHhccCCC-----CHhHHHHHHHHHHHhhcCCcch-hHHHhhc
Q 047123 433 QVSSSLLGNLSI------SDG----NKRAVASCMGSLIKLMECPK-----PVGLQEAATDAVLSLLTVRSNR-KELVRDE 496 (579)
Q Consensus 433 ~~A~~aL~~L~~------~~~----~~~~i~~~v~~Lv~lL~~~~-----~~~v~~~a~~aL~~L~~~~~~~-~~~~~~~ 496 (579)
+.....+.+-.. +++ .++.+.+++...+.+|++.. +.....++.++|+.-....++. +.-+ .
T Consensus 322 E~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v--~ 399 (543)
T PF05536_consen 322 EHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV--Y 399 (543)
T ss_pred HHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH--H
Confidence 122222222111 122 33444444666666664322 2335667888888877666553 3333 4
Q ss_pred ccHHHHHhhcCCCchh---------hhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHh
Q 047123 497 KSVMRLMQMLDPKNEA---------LNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQK 548 (579)
Q Consensus 497 ~~i~~Lv~lL~~~~~~---------~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~ 548 (579)
+-++.++++......+ ....+.+-+|+.++..+. +|+.+.++|+.+.|.+
T Consensus 400 ~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~--gr~~l~~~~g~~~l~~ 458 (543)
T PF05536_consen 400 GLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEE--GRKILLSNGGWKLLCD 458 (543)
T ss_pred HHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHH--HHHHHHhCCcHHHHHH
Confidence 6778888888765444 156677788999988877 9999999999877775
No 54
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.71 E-value=2.7e-06 Score=85.21 Aligned_cols=275 Identities=15% Similarity=0.131 Sum_probs=192.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHH
Q 047123 164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIV 243 (579)
Q Consensus 164 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i 243 (579)
-...+.+|..++.-....+.+.+..++.............=....|-.+++.+.+++....|+++|..+.. .+++|..+
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~ 194 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAF 194 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchhhee
Confidence 34567778888877776666666666543322211100011123334455523668888899999999999 99999999
Q ss_pred HhcCCHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCC-HHHHHHHHHHHHHhhcCh-
Q 047123 244 FEEGGLGPLLRILET--GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGT-ALTQSHAVGAIRNIAAVE- 319 (579)
Q Consensus 244 ~~~g~l~~Lv~lL~~--~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~a~~aL~nLs~~~- 319 (579)
+.+.++..++..+-+ .+..+|...+.+++-|+.++..++.+...+.|+.|..+++... ..+..-++.+++|+....
T Consensus 195 v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~ 274 (442)
T KOG2759|consen 195 VIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGP 274 (442)
T ss_pred eecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 999999999999943 3788999999999999999999988888899999999998754 467888889999998744
Q ss_pred ------hhHHHHHHcCCHHHHHHHhcC---CCHHHHH-------HHHHHHHHHhcCChhhH-------------------
Q 047123 320 ------DIKAALAEEGAVPVLVQSLTS---SSNLAQE-------NAADCIATLAASGEYFR------------------- 364 (579)
Q Consensus 320 ------~~~~~l~~~g~v~~Lv~lL~~---~~~~v~~-------~a~~~L~~La~~~~~~r------------------- 364 (579)
+....|+..++.+. ++.|.. .++++.. .--.-...|++.|+...
T Consensus 275 ~~~~~k~~~~~mv~~~v~k~-l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW 353 (442)
T KOG2759|consen 275 DRETKKDIASQMVLCKVLKT-LQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFW 353 (442)
T ss_pred hhhHHHHHHHHHHhcCchHH-HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchH
Confidence 33455666665555 445522 2444333 33333344444432211
Q ss_pred ----HHHHh--cCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHH
Q 047123 365 ----LLIIQ--ERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSS 436 (579)
Q Consensus 365 ----~~l~~--~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~ 436 (579)
..+-+ ...+..|+++++..++ +.....|+.=|...... .....+-.. |+-..+.+++.+.+++|+.+|.
T Consensus 354 ~eNa~rlnennyellkiL~~lLe~s~D-p~iL~VAc~DIge~Vr~yP~gk~vv~k~--ggKe~vM~Llnh~d~~Vry~AL 430 (442)
T KOG2759|consen 354 RENADRLNENNYELLKILIKLLETSND-PIILCVACHDIGEYVRHYPEGKAVVEKY--GGKERVMNLLNHEDPEVRYHAL 430 (442)
T ss_pred HHhHHHHhhccHHHHHHHHHHHhcCCC-CceeehhhhhHHHHHHhCchHhHHHHHh--chHHHHHHHhcCCCchHHHHHH
Confidence 11111 1356888999988874 46777888888888877 344445555 9999999999999999999999
Q ss_pred HHHHHhc
Q 047123 437 SLLGNLS 443 (579)
Q Consensus 437 ~aL~~L~ 443 (579)
.|+..|-
T Consensus 431 lavQ~lm 437 (442)
T KOG2759|consen 431 LAVQKLM 437 (442)
T ss_pred HHHHHHH
Confidence 9988775
No 55
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=2.5e-05 Score=85.64 Aligned_cols=324 Identities=18% Similarity=0.201 Sum_probs=222.7
Q ss_pred HHHHHHHHHHHHhccChhhHHHHH----hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHH
Q 047123 178 FKKKALESLLQLLKDDDKSAAVVA----KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLL 253 (579)
Q Consensus 178 ~~~~Al~~L~~l~~~~~~~~~~i~----~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv 253 (579)
-..-++.+|.++.+.+|+-...+. --|..+.+..++.-.+++.++.-|+.++..+.. +.+|...++..|++..|+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHH
Confidence 445789999999988886555443 246667777777635678999999999999999 999999999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHH-HhcCCCHHHHHHHHHHHHHhhcCh----hhH------
Q 047123 254 RILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIE-AFRSGTALTQSHAVGAIRNIAAVE----DIK------ 322 (579)
Q Consensus 254 ~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-ll~~~~~~~~~~a~~aL~nLs~~~----~~~------ 322 (579)
.+|.+ -+..++.+..+|..|+++++..+.-.++|++..+.. +|.+.+++.+..++..+..+...+ ..+
T Consensus 1820 ~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kF 1898 (2235)
T KOG1789|consen 1820 TLLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKF 1898 (2235)
T ss_pred HHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHh
Confidence 99977 566799999999999999999999999998777776 567778889999999998886532 111
Q ss_pred -----HHHHHcCCHHHHHHHhcCC--------CHHHHHHHHHHHHHHhcC------------------------------
Q 047123 323 -----AALAEEGAVPVLVQSLTSS--------SNLAQENAADCIATLAAS------------------------------ 359 (579)
Q Consensus 323 -----~~l~~~g~v~~Lv~lL~~~--------~~~v~~~a~~~L~~La~~------------------------------ 359 (579)
...+. ..-+..++.+... ++..+......+..++..
T Consensus 1899 LP~~f~d~~R-D~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~a 1977 (2235)
T KOG1789|consen 1899 LPEIFADSLR-DSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECA 1977 (2235)
T ss_pred chHHHHHHHh-cCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcc
Confidence 11111 1225566666432 334555555555554321
Q ss_pred --ChhhHHHHHhc------------CcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHH
Q 047123 360 --GEYFRLLIIQE------------RGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEF 423 (579)
Q Consensus 360 --~~~~r~~l~~~------------g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~l 423 (579)
....|..+.+. |.++.+++++...++....-..-..++..|... .-.+.+-.. |.++.++..
T Consensus 1978 VGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~L--GylPK~~~A 2055 (2235)
T KOG1789|consen 1978 VGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSL--GYLPKFCTA 2055 (2235)
T ss_pred cchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCc--cchHHHHHH
Confidence 00112222222 223445555554443223333334444444443 334455556 899999999
Q ss_pred HhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHH---hhccc
Q 047123 424 IKRGNVLLQQVSSSLLGNLSISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELV---RDEKS 498 (579)
Q Consensus 424 L~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~---~~~~~ 498 (579)
+...+..+-..|.+.|..|+.+.-..+++... +..+++.+.+ ......-|+++|-.+... ++..++ -..|-
T Consensus 2056 m~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK--~~~~~GLA~EalkR~~~r--~~~eLVAQ~LK~gL 2131 (2235)
T KOG1789|consen 2056 MCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKK--QPSLMGLAAEALKRLMKR--NTGELVAQMLKCGL 2131 (2235)
T ss_pred HHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHh--cchHHHHHHHHHHHHHHH--hHHHHHHHHhccCc
Confidence 88777777788999999999998888888887 8888888733 344556889999888752 222222 23688
Q ss_pred HHHHHhhcCCCc
Q 047123 499 VMRLMQMLDPKN 510 (579)
Q Consensus 499 i~~Lv~lL~~~~ 510 (579)
|+.|+++|+...
T Consensus 2132 vpyLL~LLd~~t 2143 (2235)
T KOG1789|consen 2132 VPYLLQLLDSST 2143 (2235)
T ss_pred HHHHHHHhcccc
Confidence 999999998653
No 56
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=4e-05 Score=74.39 Aligned_cols=336 Identities=13% Similarity=0.127 Sum_probs=230.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhh----HHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChh
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKS----AAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDE 238 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~----~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~ 238 (579)
+.++|..-|..++..++.-++..+..+..+.+.+ ...++..+..+.++..+. ..+.++...|...|..++. .+.
T Consensus 83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg-geddeVAkAAiesikrial-fpa 160 (524)
T KOG4413|consen 83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG-GEDDEVAKAAIESIKRIAL-FPA 160 (524)
T ss_pred hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc-CCcHHHHHHHHHHHHHHHh-cHH
Confidence 5566667777778889999999998888766633 334558899999999998 8899999999999999999 999
Q ss_pred hHHHHHhcCCHHHHHHH--HccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 047123 239 SRKIVFEEGGLGPLLRI--LETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRS-GTALTQSHAVGAIRN 314 (579)
Q Consensus 239 ~~~~i~~~g~l~~Lv~l--L~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~n 314 (579)
.-+.++....++++-.. --..+.-++......+..+.+ +++.....-..|.+..|..-++. +|.-++.+++.....
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 99999888776654322 222345567777777777764 66777777778888888877765 677788888888999
Q ss_pred hhcChhhHHHHHHcCCHHHHHHHhcCC--CHHHHHHHH----HHHHHHhcCChhhHHHHHh--cCcHHHHHHhhccCCCC
Q 047123 315 IAAVEDIKAALAEEGAVPVLVQSLTSS--SNLAQENAA----DCIATLAASGEYFRLLIIQ--ERGLQRLMHLIQDSTSS 386 (579)
Q Consensus 315 Ls~~~~~~~~l~~~g~v~~Lv~lL~~~--~~~v~~~a~----~~L~~La~~~~~~r~~l~~--~g~i~~Lv~ll~~~~~~ 386 (579)
|+..+..++.+.++|.|+.+.+.+... +|--.-.++ ..+.+.+..+- .-+.+.+ --.++....+++..++
T Consensus 241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdv-seeaicealiiaidgsfEmiEmnDp- 318 (524)
T KOG4413|consen 241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDV-SEEAICEALIIAIDGSFEMIEMNDP- 318 (524)
T ss_pred HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhc-CHHHHHHHHHHHHHhhHHhhhcCCc-
Confidence 999999999999999999999988533 332222222 33333333221 0112222 1123344455566655
Q ss_pred hHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHH-HHhcCCHHHHHHHHHHHHHhcC---C-h----------hhHH
Q 047123 387 IVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGE-FIKRGNVLLQQVSSSLLGNLSI---S-D----------GNKR 450 (579)
Q Consensus 387 ~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~-lL~~~~~~v~~~A~~aL~~L~~---~-~----------~~~~ 450 (579)
..++.|..++..+.+. +..+.+...++-...+++. ........-|+.+..+|.+++. - + ..+.
T Consensus 319 -daieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrc 397 (524)
T KOG4413|consen 319 -DAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRC 397 (524)
T ss_pred -hHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHH
Confidence 8899999999999988 5566666653333444443 3333334556777788888871 1 1 1222
Q ss_pred HHHHH---------HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHh
Q 047123 451 AVASC---------MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQ 504 (579)
Q Consensus 451 ~i~~~---------v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~ 504 (579)
.+.++ .+.+..++ .-..++++.++...+..++..+...+.+...++.|...++
T Consensus 398 lifdaaaqstkldPleLFlgil-qQpfpEihcAalktfTAiaaqPWalkeifakeefieiVtD 459 (524)
T KOG4413|consen 398 LIFDAAAQSTKLDPLELFLGIL-QQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTD 459 (524)
T ss_pred HHHHHHhhccCCChHHHHHHHH-cCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecc
Confidence 23332 45566677 5568999999999999999988888887765555544433
No 57
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.62 E-value=4.8e-06 Score=83.98 Aligned_cols=263 Identities=18% Similarity=0.172 Sum_probs=177.2
Q ss_pred HHHHhhCcHHHHHHhhccCCCH--HHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHh
Q 047123 198 AVVAKEGNVGYLISLLDFHHQS--SIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILET-GSMPLKEKAAIGVEAI 274 (579)
Q Consensus 198 ~~i~~~g~v~~Lv~LL~~~~~~--~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~aa~~L~~L 274 (579)
..+...|++..|++++. +++. .+|.+|.+.|..+.. .++++.++..| +..++.+-+. ..++.+...+.+|.++
T Consensus 174 D~iR~~~~lD~Llrmf~-aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQ-APNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hHhhccchHHHHHHHHh-CCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 34556789999999999 8874 458899999987754 47788888777 5555555554 4788899999999999
Q ss_pred cC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHH
Q 047123 275 TT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV--EDIKAALAEEGAVPVLVQSLTSSSNLAQENAAD 351 (579)
Q Consensus 275 s~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~--~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~ 351 (579)
-. +.+.+..+++.|++..++-.|+..++.+..+++.+|.|++.+ -+.+..|++..+-+-|..+-.+.++-.+.+||-
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 84 668899999999999999999999999999999999999874 467888999888888888877888889999999
Q ss_pred HHHHHhcCChhhHHHHHhcCcH---HHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCC
Q 047123 352 CIATLAASGEYFRLLIIQERGL---QRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGN 428 (579)
Q Consensus 352 ~L~~La~~~~~~r~~l~~~g~i---~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~ 428 (579)
+++-++... ++-..+.+.|.+ ++++..++.+.- .+ +..+-.....+..+++|+.+|.+.-
T Consensus 330 AV~vlat~K-E~E~~VrkS~TlaLVEPlva~~DP~~F---AR-------------D~hd~aQG~~~d~LqRLvPlLdS~R 392 (832)
T KOG3678|consen 330 AVAVLATNK-EVEREVRKSGTLALVEPLVASLDPGRF---AR-------------DAHDYAQGRGPDDLQRLVPLLDSNR 392 (832)
T ss_pred HHhhhhhhh-hhhHHHhhccchhhhhhhhhccCcchh---hh-------------hhhhhhccCChHHHHHhhhhhhcch
Confidence 999998754 345555566644 555555544321 00 0000111112245677777777655
Q ss_pred HHHHHHHHHHHHHhc--CChhhHHHHHHH---HHHHHHhccCCCCHhHHHHHHHHHHHh
Q 047123 429 VLLQQVSSSLLGNLS--ISDGNKRAVASC---MGSLIKLMECPKPVGLQEAATDAVLSL 482 (579)
Q Consensus 429 ~~v~~~A~~aL~~L~--~~~~~~~~i~~~---v~~Lv~lL~~~~~~~v~~~a~~aL~~L 482 (579)
.+.|--++.-++.=+ .+..++..+.+. |..|-++. .+.+...-..|.+||.-+
T Consensus 393 ~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKeva-SS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 393 LEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVA-SSPDEVAAKFASEALTVI 450 (832)
T ss_pred hhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHh
Confidence 555543333222222 233333333332 56666665 343333334455555544
No 58
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.62 E-value=1.9e-05 Score=82.34 Aligned_cols=244 Identities=12% Similarity=0.028 Sum_probs=173.0
Q ss_pred HHHHHHHHhc-cCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123 163 FIRDIFTRLQ-IGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK 241 (579)
Q Consensus 163 ~v~~Lv~~L~-~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~ 241 (579)
.++.++..|. ..+.+++..++..+... ++ ...+..|+..|. +.++.++..++.+|+.+..
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~---------~~~~~~L~~~L~-d~~~~vr~aaa~ALg~i~~------- 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQ--ED---------ALDLRSVLAVLQ-AGPEGLCAGIQAALGWLGG------- 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhcc--CC---------hHHHHHHHHHhc-CCCHHHHHHHHHHHhcCCc-------
Confidence 3677788884 55666666555555322 11 113888999998 8888899999999998877
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhh
Q 047123 242 IVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDI 321 (579)
Q Consensus 242 ~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~ 321 (579)
.+..+.|+..|++.++.++..+..++..... ...+.|..++++.++.++..++.+|..+-.
T Consensus 116 ----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~---- 176 (410)
T TIGR02270 116 ----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH-----------DPGPALEAALTHEDALVRAAALRALGELPR---- 176 (410)
T ss_pred ----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----
Confidence 5778899999999999999888877766322 234788899999999999999999987644
Q ss_pred HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhh-ccCCCChHHHHHHHHHHHHc
Q 047123 322 KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLI-QDSTSSIVTVENALLAISSL 400 (579)
Q Consensus 322 ~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll-~~~~~~~~~~~~A~~aL~~L 400 (579)
...++.|...+.+.++.++..|+..+..+-. + ..+..+..+. ..+.+ ....+..++...
T Consensus 177 ------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~g~~---~~~~l~~~lal~ 236 (410)
T TIGR02270 177 ------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLEGGP---HRQRLLVLLAVA 236 (410)
T ss_pred ------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhccCcc---HHHHHHHHHHhC
Confidence 2466778888999999999999999876633 1 2244555522 22222 222223333322
Q ss_pred ccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHH
Q 047123 401 SLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVL 480 (579)
Q Consensus 401 ~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~ 480 (579)
..+ .++..|..+++... ++..++.++..+..... ++.|+..+ +. ..++..|.+++.
T Consensus 237 -~~~----------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p~a--------v~~L~~~l-~d--~~~aR~A~eA~~ 292 (410)
T TIGR02270 237 -GGP----------DAQAWLRELLQAAA--TRREALRAVGLVGDVEA--------APWCLEAM-RE--PPWARLAGEAFS 292 (410)
T ss_pred -Cch----------hHHHHHHHHhcChh--hHHHHHHHHHHcCCcch--------HHHHHHHh-cC--cHHHHHHHHHHH
Confidence 111 57778888887654 89999999998875544 88999999 33 238999999999
Q ss_pred HhhcCCcc
Q 047123 481 SLLTVRSN 488 (579)
Q Consensus 481 ~L~~~~~~ 488 (579)
.+..-.-.
T Consensus 293 ~ItG~~l~ 300 (410)
T TIGR02270 293 LITGMDVA 300 (410)
T ss_pred HhhCCCcc
Confidence 99875433
No 59
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=6.6e-05 Score=80.91 Aligned_cols=350 Identities=12% Similarity=0.060 Sum_probs=215.2
Q ss_pred CchhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc
Q 047123 155 SHKQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVS 234 (579)
Q Consensus 155 a~~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~ 234 (579)
.+.|-.+...++..++|+..++-+|.+|+.|...+....|+.... +++...++|. +.++.+...++..+..++.
T Consensus 135 ~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~-ek~hGVL~~~l~l~~e~c~ 208 (866)
T KOG1062|consen 135 CSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLC-EKHHGVLIAGLHLITELCK 208 (866)
T ss_pred CCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHh-hcCCceeeeHHHHHHHHHh
Confidence 566777888899999999999999999999999998877776544 4666777887 8888888888888888888
Q ss_pred cChhhHHHHHhcCCHHHHHHHHcc---------------CCHHHHHHHHHHHHHhcCCCcc-HHHHHh------------
Q 047123 235 ANDESRKIVFEEGGLGPLLRILET---------------GSMPLKEKAAIGVEAITTDPEN-AWAISA------------ 286 (579)
Q Consensus 235 ~~~~~~~~i~~~g~l~~Lv~lL~~---------------~~~~v~~~aa~~L~~Ls~~~~~-~~~i~~------------ 286 (579)
.+++.-..+.+ .++.|+..|++ .+|.+|....+.|.-|..++.. .+.+.+
T Consensus 209 ~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdss 286 (866)
T KOG1062|consen 209 ISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSS 286 (866)
T ss_pred cCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhccccc
Confidence 56666666654 67778888764 1677888888888888864432 222211
Q ss_pred cC-cHHHHHHHhc-----CCCHHHHHHHHHHHHHhhcChhh-HHHH--------H--HcCCH----HHHHHHhcCCCHHH
Q 047123 287 YG-GVSVLIEAFR-----SGTALTQSHAVGAIRNIAAVEDI-KAAL--------A--EEGAV----PVLVQSLTSSSNLA 345 (579)
Q Consensus 287 ~g-~i~~Lv~ll~-----~~~~~~~~~a~~aL~nLs~~~~~-~~~l--------~--~~g~v----~~Lv~lL~~~~~~v 345 (579)
.+ |=..|.+... ..+..++..|+.+|...-.++++ -+.+ + +..++ ..++.+|++.+..+
T Consensus 287 kN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SI 366 (866)
T KOG1062|consen 287 KNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSI 366 (866)
T ss_pred ccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHH
Confidence 00 1111222111 24556777777777666554332 1111 1 11222 34667777777788
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHH
Q 047123 346 QENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEF 423 (579)
Q Consensus 346 ~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~l 423 (579)
+..|++.+..|...+ +.+. .++.|+.+|...+. +.+...+.-+..++.. +... -.+..+...
T Consensus 367 krralELs~~lvn~~-Nv~~------mv~eLl~fL~~~d~--~~k~~~as~I~~laEkfaP~k~-------W~idtml~V 430 (866)
T KOG1062|consen 367 KRRALELSYALVNES-NVRV------MVKELLEFLESSDE--DFKADIASKIAELAEKFAPDKR-------WHIDTMLKV 430 (866)
T ss_pred HHHHHHHHHHHhccc-cHHH------HHHHHHHHHHhccH--HHHHHHHHHHHHHHHhcCCcch-------hHHHHHHHH
Confidence 888888777776643 3322 35677777777754 6777777777766654 2211 456677777
Q ss_pred HhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH-HHHHHH--hccCCCCHhHHHHHHHHHHHhh---cC--CcchhHHH
Q 047123 424 IKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC-MGSLIK--LMECPKPVGLQEAATDAVLSLL---TV--RSNRKELV 493 (579)
Q Consensus 424 L~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~-v~~Lv~--lL~~~~~~~v~~~a~~aL~~L~---~~--~~~~~~~~ 493 (579)
+.....-|+......+..|- ..++...+.... ...+.. ++ .-....+...+.++|+... .+ ..+-...+
T Consensus 431 l~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~-~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~v 509 (866)
T KOG1062|consen 431 LKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLL-DISQEPLLQVASWCIGEYGDLLLDGANEEEPIKV 509 (866)
T ss_pred HHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhh-hhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcC
Confidence 77665555555544444443 212322221111 111111 22 2223445667777777654 11 11222344
Q ss_pred hhcccHHHHHhhcCCCchh-hhhHHHHHHHHHHhCCC
Q 047123 494 RDEKSVMRLMQMLDPKNEA-LNKKFPVMVTAAVLGGG 529 (579)
Q Consensus 494 ~~~~~i~~Lv~lL~~~~~~-~~k~~av~~L~~L~~~~ 529 (579)
.+...+..|.+++...... +.|.+++.++++|+.--
T Consensus 510 tesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~ 546 (866)
T KOG1062|consen 510 TESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRF 546 (866)
T ss_pred CHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhc
Confidence 4567788888888766443 38999999999998533
No 60
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=1.5e-05 Score=76.85 Aligned_cols=295 Identities=15% Similarity=0.168 Sum_probs=194.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHH-hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVA-KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK 241 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~-~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~ 241 (579)
..-+++..|++.++.++..|+..+..+... ..+.... +.-.++.+.+|++ ..++ -+.|+.+|.|++. ++..++
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~-~~~~--~~~a~~alVnlsq-~~~l~~ 77 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLK-DLDP--AEPAATALVNLSQ-KEELRK 77 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHcc-Cccc--ccHHHHHHHHHHh-hHHHHH
Confidence 356789999999999999999999988755 2222221 3556888899988 6655 6789999999999 999999
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh-------cCcHHHHHHHhcCCCH--HHHHHHHHHH
Q 047123 242 IVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISA-------YGGVSVLIEAFRSGTA--LTQSHAVGAI 312 (579)
Q Consensus 242 ~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~-------~g~i~~Lv~ll~~~~~--~~~~~a~~aL 312 (579)
.+.+. .+..++..+-++....-...|..|.||+..+.....+.. .|.+......+..+-. .-..+.+-++
T Consensus 78 ~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf 156 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVF 156 (353)
T ss_pred HHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHH
Confidence 99877 666677777666566777888999999987654443322 3444444455654322 2345667788
Q ss_pred HHhhcChhhHHHHHHcCCHHH-HHHHhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHH
Q 047123 313 RNIAAVEDIKAALAEEGAVPV-LVQSLTSS-SNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTV 390 (579)
Q Consensus 313 ~nLs~~~~~~~~l~~~g~v~~-Lv~lL~~~-~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~ 390 (579)
.||+..+..|..+.+...++. .+..+.+. +.--+...+++|.|.|.+.. ....+.+ -.+..|..+|..
T Consensus 157 ~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~-~h~~lL~-e~~~lLp~iLlP-------- 226 (353)
T KOG2973|consen 157 ANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAK-LHEVLLD-ESINLLPAILLP-------- 226 (353)
T ss_pred HHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccch-hHHHHhc-chHHHHHHHHhh--------
Confidence 999999999998887664443 11123333 33455678899999988654 3555554 223333322221
Q ss_pred HHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHh-----cCCHHHHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhcc
Q 047123 391 ENALLAISSLSLSDSAARILSSTTSFIIQLGEFIK-----RGNVLLQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLME 464 (579)
Q Consensus 391 ~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~-----~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~ 464 (579)
++..+. +-+.+-..++.=+++|. ..++.++..-..+|.-|+.....|+.+... +.++++.+.
T Consensus 227 ---------lagpee---~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElh 294 (353)
T KOG2973|consen 227 ---------LAGPEE---LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELH 294 (353)
T ss_pred ---------cCCccc---cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHh
Confidence 111100 00000011222225553 458899999999999999888999999998 888888772
Q ss_pred -CCCCHhHHHHHHHHHHHhhcCC
Q 047123 465 -CPKPVGLQEAATDAVLSLLTVR 486 (579)
Q Consensus 465 -~~~~~~v~~~a~~aL~~L~~~~ 486 (579)
..++.++++.+-...--|.+..
T Consensus 295 k~e~ded~~~ace~vvq~Lv~~e 317 (353)
T KOG2973|consen 295 KWEEDEDIREACEQVVQMLVRLE 317 (353)
T ss_pred cCCCcHHHHHHHHHHHHHHHhcc
Confidence 3457777877777666666543
No 61
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.55 E-value=3.5e-05 Score=80.29 Aligned_cols=246 Identities=15% Similarity=0.033 Sum_probs=173.2
Q ss_pred hCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHH
Q 047123 203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAW 282 (579)
Q Consensus 203 ~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~ 282 (579)
..+++.|+..|...++.+++..++.++..... ..++..|++.|.+.++.++..++.+|..+-.
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~-----------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------ 115 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQED-----------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG------ 115 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccCC-----------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc------
Confidence 34688899988425667777666554432222 1238999999999999999999999987543
Q ss_pred HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh
Q 047123 283 AISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEY 362 (579)
Q Consensus 283 ~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~ 362 (579)
....+.|+.++++.++.++..++.++... .....+.+..+|++.++.++..++.+|+.+..
T Consensus 116 ----~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~---- 176 (410)
T TIGR02270 116 ----RQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPR---- 176 (410)
T ss_pred ----hHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----
Confidence 34668899999999999998888776652 12245788889999999999999999998765
Q ss_pred hHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 047123 363 FRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNL 442 (579)
Q Consensus 363 ~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L 442 (579)
...++.|...+.+.++ .++..|+.++..+... .++..+..+...........+..++...
T Consensus 177 -------~~a~~~L~~al~d~~~--~VR~aA~~al~~lG~~-----------~A~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 177 -------RLSESTLRLYLRDSDP--EVRFAALEAGLLAGSR-----------LAWGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred -------ccchHHHHHHHcCCCH--HHHHHHHHHHHHcCCH-----------hHHHHHHHHHhccCccHHHHHHHHHHhC
Confidence 2346667777777766 8999999999777543 4555555544333333333333333333
Q ss_pred cCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHH
Q 047123 443 SISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVT 522 (579)
Q Consensus 443 ~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L 522 (579)
..+ +.++.|..++ .. ..++..++.+|+.+-. ...++.|++.+++.. .+..+-.++
T Consensus 237 -~~~-------~a~~~L~~ll-~d--~~vr~~a~~AlG~lg~-----------p~av~~L~~~l~d~~---~aR~A~eA~ 291 (410)
T TIGR02270 237 -GGP-------DAQAWLRELL-QA--AATRREALRAVGLVGD-----------VEAAPWCLEAMREPP---WARLAGEAF 291 (410)
T ss_pred -Cch-------hHHHHHHHHh-cC--hhhHHHHHHHHHHcCC-----------cchHHHHHHHhcCcH---HHHHHHHHH
Confidence 322 2278888888 33 2389999999998663 567899999998654 666777777
Q ss_pred HHHhCCC
Q 047123 523 AAVLGGG 529 (579)
Q Consensus 523 ~~L~~~~ 529 (579)
..++.-+
T Consensus 292 ~~ItG~~ 298 (410)
T TIGR02270 292 SLITGMD 298 (410)
T ss_pred HHhhCCC
Confidence 7776533
No 62
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.53 E-value=5.7e-06 Score=83.45 Aligned_cols=252 Identities=17% Similarity=0.186 Sum_probs=180.2
Q ss_pred HHHHHhcCcHHHHHHHhcCCCH--HHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhc-CCCHHHHHHHHHHHHHHh
Q 047123 281 AWAISAYGGVSVLIEAFRSGTA--LTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLT-SSSNLAQENAADCIATLA 357 (579)
Q Consensus 281 ~~~i~~~g~i~~Lv~ll~~~~~--~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~-~~~~~v~~~a~~~L~~La 357 (579)
|..+...|++..|+.++...+. .++..+...|-.+. ..+|++.++..| ...++.+-+ .+.++.+...+..|.++-
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 4566678999999999998765 45777887776654 347788888777 555555543 345688999999999998
Q ss_pred cCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc---hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHH
Q 047123 358 ASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS---DSAARILSSTTSFIIQLGEFIKRGNVLLQQV 434 (579)
Q Consensus 358 ~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~---~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~ 434 (579)
.+.+..+..++..|+++.++-..+..++ .+..+++-+|.|++.+ .....+++. .+-+.|..+-.+.+.-.+..
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P--~lLRH~ALAL~N~~L~~~~a~qrrmveK--r~~EWLF~LA~skDel~R~~ 326 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDP--ALLRHCALALGNCALHGGQAVQRRMVEK--RAAEWLFPLAFSKDELLRLH 326 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCH--HHHHHHHHHhhhhhhhchhHHHHHHHHh--hhhhhhhhhhcchHHHHHHH
Confidence 8888888999999999999888887775 8999999999999987 667788988 88888888888888899999
Q ss_pred HHHHHHHhcCChhhHHHHHHH-----HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHh--hcccHHHHHhhcC
Q 047123 435 SSSLLGNLSISDGNKRAVASC-----MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVR--DEKSVMRLMQMLD 507 (579)
Q Consensus 435 A~~aL~~L~~~~~~~~~i~~~-----v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~--~~~~i~~Lv~lL~ 507 (579)
|+-+++.|+.+.+..+.+... +++|+..+ +..- -.|.+ ....+ ...-++.|+.||+
T Consensus 327 AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~-DP~~-FARD~---------------hd~aQG~~~d~LqRLvPlLd 389 (832)
T KOG3678|consen 327 ACLAVAVLATNKEVEREVRKSGTLALVEPLVASL-DPGR-FARDA---------------HDYAQGRGPDDLQRLVPLLD 389 (832)
T ss_pred HHHHHhhhhhhhhhhHHHhhccchhhhhhhhhcc-Ccch-hhhhh---------------hhhhccCChHHHHHhhhhhh
Confidence 999999999888877777665 77777777 3221 11111 11111 1224678888998
Q ss_pred CCchhhhhHHHHHHHHHHhCCCCh-hHHHHHHHcCchHHHHhhhccCCch
Q 047123 508 PKNEALNKKFPVMVTAAVLGGGSN-GCRKRLVAAGAYQHLQKLAETEVPG 556 (579)
Q Consensus 508 ~~~~~~~k~~av~~L~~L~~~~~~-~~r~~i~~~g~~~~L~~L~~~~~~~ 556 (579)
++.-+ .+-.+.--++.-+.-++. +--+.+-+-|+|..|..++.+.+..
T Consensus 390 S~R~E-Aq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~v 438 (832)
T KOG3678|consen 390 SNRLE-AQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEV 438 (832)
T ss_pred cchhh-hhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHH
Confidence 65433 222222222222221211 1346677899999999999876653
No 63
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=0.00024 Score=69.09 Aligned_cols=338 Identities=15% Similarity=0.105 Sum_probs=220.3
Q ss_pred cHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh----HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc
Q 047123 205 NVGYLISLLDFHHQSSIREQAVLALSIIVSANDES----RKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPEN 280 (579)
Q Consensus 205 ~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~----~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~ 280 (579)
..|.|..=|. .++..+...++..++-+-.+.+.+ ...++..|.++.++..+...+.++...|...+..++..+..
T Consensus 83 lmpdLQrGLi-addasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaa 161 (524)
T KOG4413|consen 83 LMPDLQRGLI-ADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAA 161 (524)
T ss_pred hhHHHHhccc-CCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHH
Confidence 3455555555 777888888888888777644422 23345789999999999999999999999999999988887
Q ss_pred HHHHHhcCcHHHH--HHHhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhcC-CCHHHHHHHHHHHHHH
Q 047123 281 AWAISAYGGVSVL--IEAFRSGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTS-SSNLAQENAADCIATL 356 (579)
Q Consensus 281 ~~~i~~~g~i~~L--v~ll~~~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~~-~~~~v~~~a~~~L~~L 356 (579)
-..+...+....+ .++-...+.-.+......+..+.+ .++.....-..|.+..|..-+.. .+.-++..+++....|
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 7777766544433 233233344455666666666655 66666666678888887777754 5667888999999999
Q ss_pred hcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHc----ccch-hHHHHHhhcCcHHHHHHHHHhcCCHHH
Q 047123 357 AASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSL----SLSD-SAARILSSTTSFIIQLGEFIKRGNVLL 431 (579)
Q Consensus 357 a~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L----~~~~-~~~~l~~~~~g~i~~L~~lL~~~~~~v 431 (579)
+... ..|+.+.++|.++.+..++...++.+--+-.+......+ +..+ .-+.+.+.-.-++....++++..+++.
T Consensus 242 aete-HgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda 320 (524)
T KOG4413|consen 242 AETE-HGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA 320 (524)
T ss_pred HHHh-hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence 8754 568889999999999998866554333333333333332 2222 222233321135666778889999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHH----HHHHH-HhccCCCCHhHHHHHHHHHHHhhcC---CcchhH----------HH
Q 047123 432 QQVSSSLLGNLSISDGNKRAVASC----MGSLI-KLMECPKPVGLQEAATDAVLSLLTV---RSNRKE----------LV 493 (579)
Q Consensus 432 ~~~A~~aL~~L~~~~~~~~~i~~~----v~~Lv-~lL~~~~~~~v~~~a~~aL~~L~~~---~~~~~~----------~~ 493 (579)
+..|..+++-|..+.+..+.+... .+.++ +.. +-....-++.+..+|.+++.. .+++.. .+
T Consensus 321 ieaAiDalGilGSnteGadlllkTgppaaehllaraf-dqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcli 399 (524)
T KOG4413|consen 321 IEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAF-DQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLI 399 (524)
T ss_pred HHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHh-cccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHH
Confidence 999999999999888888777666 33333 344 333334467777777777643 222210 00
Q ss_pred -----h--hcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHH-HcCchHHHHh
Q 047123 494 -----R--DEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLV-AAGAYQHLQK 548 (579)
Q Consensus 494 -----~--~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~-~~g~~~~L~~ 548 (579)
+ .-.........+..+.++ ..-++...+..++..+= +.+.|. ..|.+....+
T Consensus 400 fdaaaqstkldPleLFlgilqQpfpE-ihcAalktfTAiaaqPW--alkeifakeefieiVtD 459 (524)
T KOG4413|consen 400 FDAAAQSTKLDPLELFLGILQQPFPE-IHCAALKTFTAIAAQPW--ALKEIFAKEEFIEIVTD 459 (524)
T ss_pred HHHHhhccCCChHHHHHHHHcCCChh-hHHHHHHHHHHHHcCcH--HHHHHhcCccceeeecc
Confidence 0 012233445566666666 67777888888887765 656555 4555555544
No 64
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.44 E-value=2.4e-06 Score=72.24 Aligned_cols=135 Identities=14% Similarity=0.194 Sum_probs=117.2
Q ss_pred CHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHH
Q 047123 248 GLGPLLRILET-GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALA 326 (579)
Q Consensus 248 ~l~~Lv~lL~~-~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~ 326 (579)
.+..|+.-... .+.+.++....-|.|.+.+|.|-..+.+.+++...+.-+...+..+.+.+++.|+|+|.++.+.+.+.
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ 96 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIR 96 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHH
Confidence 34444444433 47889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcc
Q 047123 327 EEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQD 382 (579)
Q Consensus 327 ~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~ 382 (579)
+.+++|.++..+++..+.+...++.++..|+..+...|..+....+++.+.++-.+
T Consensus 97 ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s 152 (173)
T KOG4646|consen 97 EALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRES 152 (173)
T ss_pred HhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998877778888777777776665433
No 65
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.36 E-value=0.00018 Score=73.95 Aligned_cols=248 Identities=19% Similarity=0.266 Sum_probs=179.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
.+..++..+.+.+..+|..|...+..+. ....++.|..++. +.++.+|..|+.+|+.+..
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~-d~~~~vr~~a~~aLg~~~~-------- 103 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLS-DEDPRVRDAAADALGELGD-------- 103 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhc-CCCHHHHHHHHHHHHccCC--------
Confidence 5788889999999999999998876663 2346999999999 9999999999999999887
Q ss_pred HHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHH------------HHHHHH
Q 047123 243 VFEEGGLGPLLRILE-TGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTAL------------TQSHAV 309 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~-~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~------------~~~~a~ 309 (579)
...+++++..+. +++..++..++++|..+-.. ..+..++..+++.... ++..+.
T Consensus 104 ---~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 104 ---PEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred ---hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 567999999999 58999999999999998752 2468888888776532 333333
Q ss_pred HHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHH
Q 047123 310 GAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVT 389 (579)
Q Consensus 310 ~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~ 389 (579)
..|.. +.+...++.+...+.+.+..++..+..+|..+...+ ....+.+...+.+.+. .+
T Consensus 171 ~~l~~----------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~--~v 229 (335)
T COG1413 171 EALGE----------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESL--EV 229 (335)
T ss_pred HHHHH----------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCH--HH
Confidence 33332 223446788888888888899999999998887643 2345667777777665 78
Q ss_pred HHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCH
Q 047123 390 VENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPV 469 (579)
Q Consensus 390 ~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~ 469 (579)
+..++.+|..+-.. ..+..+...+...+..+...+..++...-... ....+...+ .....
T Consensus 230 r~~~~~~l~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~-~~~~~ 289 (335)
T COG1413 230 RKAALLALGEIGDE-----------EAVDALAKALEDEDVILALLAAAALGALDLAE--------AALPLLLLL-IDEAN 289 (335)
T ss_pred HHHHHHHhcccCcc-----------hhHHHHHHHHhccchHHHHHHHHHhcccCchh--------hHHHHHHHh-hcchh
Confidence 88888888876654 56677777888888877766666655221111 144455555 44556
Q ss_pred hHHHHHHHHHHHhhc
Q 047123 470 GLQEAATDAVLSLLT 484 (579)
Q Consensus 470 ~v~~~a~~aL~~L~~ 484 (579)
.++..+..++.....
T Consensus 290 ~~~~~~~~~l~~~~~ 304 (335)
T COG1413 290 AVRLEAALALGQIGQ 304 (335)
T ss_pred hHHHHHHHHHHhhcc
Confidence 667777766666543
No 66
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.00021 Score=76.10 Aligned_cols=308 Identities=14% Similarity=0.098 Sum_probs=186.5
Q ss_pred hhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccC
Q 047123 157 KQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAN 236 (579)
Q Consensus 157 ~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~ 236 (579)
.+--|..-++++.+|.+.-+-+|.+|.-.+..+.-.-|+..+ ...|.|++-|+ ++|+.++-.|+.+++.|+..+
T Consensus 139 pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLe-DpDp~V~SAAV~VICELArKn 212 (877)
T KOG1059|consen 139 PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLE-DPDPSVVSAAVSVICELARKN 212 (877)
T ss_pred chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhcc-CCCchHHHHHHHHHHHHHhhC
Confidence 344466789999999999999999999888888765555432 35899999999 999999999999999999876
Q ss_pred hhhH--------HHHH-------------------------hcCCHHHHHHHHccCC-HHHHHHHHHHHHH--hcC-CCc
Q 047123 237 DESR--------KIVF-------------------------EEGGLGPLLRILETGS-MPLKEKAAIGVEA--ITT-DPE 279 (579)
Q Consensus 237 ~~~~--------~~i~-------------------------~~g~l~~Lv~lL~~~~-~~v~~~aa~~L~~--Ls~-~~~ 279 (579)
|.+- +.+. ....++||..++++.. +.+...+..++.. ++. .++
T Consensus 213 PknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d 292 (877)
T KOG1059|consen 213 PQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD 292 (877)
T ss_pred CcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC
Confidence 6652 1111 1235566666665542 3333344433322 222 112
Q ss_pred cHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123 280 NAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA 358 (579)
Q Consensus 280 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~ 358 (579)
+-..+ .=.+..|-.++.+.|+.++..++.++..+.. ++..... --+.++++|.+.++.++..|+..|.-+..
T Consensus 293 ~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 293 HSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred cHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 11111 1145677778889999999999999998876 4432222 12467889999999999999999998876
Q ss_pred CChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHH
Q 047123 359 SGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSL 438 (579)
Q Consensus 359 ~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~a 438 (579)
.+ +.++ .+..|+..+..... ...+...+.-+-.+|...+-.-+..- .-.+..|+++.+-....--..-+.=
T Consensus 366 kk-Nl~e------IVk~LM~~~~~ae~-t~yrdell~~II~iCS~snY~~ItdF-EWYlsVlveLa~l~~~~~G~~I~eQ 436 (877)
T KOG1059|consen 366 KK-NLME------IVKTLMKHVEKAEG-TNYRDELLTRIISICSQSNYQYITDF-EWYLSVLVELARLEGTRHGSLIAEQ 436 (877)
T ss_pred hh-hHHH------HHHHHHHHHHhccc-hhHHHHHHHHHHHHhhhhhhhhhhhH-HHHHHHHHHHHhccccchhhHHHHH
Confidence 43 3222 35566665544433 13455555555555554222222211 0235566666543332222223333
Q ss_pred HHHhc-CChhhHHHHHHHHHHHHH--hc-----cCCCCHhHHHHHHHHHHHhhcCC
Q 047123 439 LGNLS-ISDGNKRAVASCMGSLIK--LM-----ECPKPVGLQEAATDAVLSLLTVR 486 (579)
Q Consensus 439 L~~L~-~~~~~~~~i~~~v~~Lv~--lL-----~~~~~~~v~~~a~~aL~~L~~~~ 486 (579)
+.+++ .-+..|......+-.|+. ++ .++.-.+|..+|+++++..+...
T Consensus 437 i~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~v 492 (877)
T KOG1059|consen 437 IIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFV 492 (877)
T ss_pred HHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHh
Confidence 55566 555556544444333333 22 12234677778888888877643
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=0.00042 Score=76.45 Aligned_cols=325 Identities=13% Similarity=0.141 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHh----cCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHH
Q 047123 221 IREQAVLALSIIVSANDESRKIVFE----EGGLGPLLRILET-GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIE 295 (579)
Q Consensus 221 ~~~~A~~aL~~La~~~~~~~~~i~~----~g~l~~Lv~lL~~-~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ 295 (579)
-.+.++.+|.|+-..+|+....+.. -|-++.++.++.. +.+.++.-+...+..++.+.+|...++..|.+..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 4457889999988768865544433 3667777777776 4788999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCC---hhhHH------
Q 047123 296 AFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSL-TSSSNLAQENAADCIATLAASG---EYFRL------ 365 (579)
Q Consensus 296 ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL-~~~~~~v~~~a~~~L~~La~~~---~~~r~------ 365 (579)
+|-+ -+..++.++.+|..|+++++.-....++|++.-+..++ .+.++..+..++..++.|..+. +..+-
T Consensus 1821 lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFL 1899 (2235)
T KOG1789|consen 1821 LLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFL 1899 (2235)
T ss_pred HHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhc
Confidence 8854 56789999999999999999888888889888887776 5567889999999999997532 11111
Q ss_pred --HHHh--cCcHHHHHHhhccCCCChH------HHHHHHHHHHHcccc--------------------------------
Q 047123 366 --LIIQ--ERGLQRLMHLIQDSTSSIV------TVENALLAISSLSLS-------------------------------- 403 (579)
Q Consensus 366 --~l~~--~g~i~~Lv~ll~~~~~~~~------~~~~A~~aL~~L~~~-------------------------------- 403 (579)
.+.+ ..+.+..+++++..+.+++ .+......+..+...
T Consensus 1900 P~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVG 1979 (2235)
T KOG1789|consen 1900 PEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVG 1979 (2235)
T ss_pred hHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccc
Confidence 1111 1223677777766543222 222233333333221
Q ss_pred ---------------hhHHHHHhhcCcHHHHHHHHHhcCCHH--HHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhc
Q 047123 404 ---------------DSAARILSSTTSFIIQLGEFIKRGNVL--LQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLM 463 (579)
Q Consensus 404 ---------------~~~~~l~~~~~g~i~~L~~lL~~~~~~--v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL 463 (579)
..-+.++. +.+..+++++...+++ .-..-.+++..|- .+|.....+..- +|.++..+
T Consensus 1980 G~~~R~Fi~~P~f~LR~Pk~FL~---~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am 2056 (2235)
T KOG1789|consen 1980 GSINREFVVGPGFNLRHPKLFLT---ELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAM 2056 (2235)
T ss_pred hhhhHHHhhCCCCcccCHHHHHH---HHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHH
Confidence 00011111 3455556666554442 2222334444444 677776666665 89999877
Q ss_pred cCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCch
Q 047123 464 ECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAY 543 (579)
Q Consensus 464 ~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~ 543 (579)
...+..+-..|.++|..|+.+.-+...+.+ ...+..++..|...... ...|+.+|..+......+...++...|.+
T Consensus 2057 -~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~-l~~i~~~m~~mkK~~~~--~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2057 -CLQNTSAPRSAIRVLHELSENQFCCDAMAQ-LPCIDGIMKSMKKQPSL--MGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred -HhcCCcCcHHHHHHHHHHhhccHHHHHHhc-cccchhhHHHHHhcchH--HHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence 444555568899999999987666666554 66667788887755433 23556666666654433456667789999
Q ss_pred HHHHhhhccC
Q 047123 544 QHLQKLAETE 553 (579)
Q Consensus 544 ~~L~~L~~~~ 553 (579)
++|.+|++..
T Consensus 2133 pyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2133 PYLLQLLDSS 2142 (2235)
T ss_pred HHHHHHhccc
Confidence 9999998764
No 68
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.00044 Score=74.32 Aligned_cols=349 Identities=14% Similarity=0.100 Sum_probs=214.1
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChh--------
Q 047123 167 IFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDE-------- 238 (579)
Q Consensus 167 Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~-------- 238 (579)
..+.-++.+.+++..|+.||..++.-..++...-......+.-+.-++ +.+.++..++...-+++|...-+
T Consensus 222 vcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amk-s~~deValQaiEFWsticeEEiD~~~e~~e~ 300 (859)
T KOG1241|consen 222 VCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMK-SDNDEVALQAIEFWSTICEEEIDLAIEYGEA 300 (859)
T ss_pred eeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456778999999999999998766666666566666777777778 99999999999999988862111
Q ss_pred --------hHHHHH--hcCCHHHHHHHHccC-------CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCC
Q 047123 239 --------SRKIVF--EEGGLGPLLRILETG-------SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGT 301 (579)
Q Consensus 239 --------~~~~i~--~~g~l~~Lv~lL~~~-------~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~ 301 (579)
+..... -.+++|.|+++|... +-.....|..+|.-++..- ...|+. .+++-+=+.++++|
T Consensus 301 ~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~--~D~Iv~-~Vl~Fiee~i~~pd 377 (859)
T KOG1241|consen 301 VDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV--GDDIVP-HVLPFIEENIQNPD 377 (859)
T ss_pred hhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh--cccchh-hhHHHHHHhcCCcc
Confidence 011111 125778888888652 2235555666666655311 111111 23333334566788
Q ss_pred HHHHHHHHHHHHHhhcCh-hhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhH-HHHHhcCcHHHHHHh
Q 047123 302 ALTQSHAVGAIRNIAAVE-DIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFR-LLIIQERGLQRLMHL 379 (579)
Q Consensus 302 ~~~~~~a~~aL~nLs~~~-~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r-~~l~~~g~i~~Lv~l 379 (579)
..-++.++.++..+-..+ ..+..-...+++|.++.++.+.+--++..+.|+++.++..-+..+ ....-.+.++.++.-
T Consensus 378 wr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~g 457 (859)
T KOG1241|consen 378 WRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEG 457 (859)
T ss_pred hhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHH
Confidence 899999999998887744 345555567899999999998888899999999999987654311 111113344555555
Q ss_pred hccCCCChHHHHHHHHHHHHcccc--h----h-----HHHHHhhcCcHHHHHHHHHhc---CCHHHHHHHHHHHHHhc-C
Q 047123 380 IQDSTSSIVTVENALLAISSLSLS--D----S-----AARILSSTTSFIIQLGEFIKR---GNVLLQQVSSSLLGNLS-I 444 (579)
Q Consensus 380 l~~~~~~~~~~~~A~~aL~~L~~~--~----~-----~~~l~~~~~g~i~~L~~lL~~---~~~~v~~~A~~aL~~L~-~ 444 (579)
+.+. +.+..++++++.+|+.. + . ...+.+. .+..|++.-.. .....|..|-.+|+.|. .
T Consensus 458 L~De---Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~---ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~ 531 (859)
T KOG1241|consen 458 LNDE---PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEA---IIGSLLKVTDRADGNQSNLRSAAYEALMELIKN 531 (859)
T ss_pred hhhC---chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHH---HHHHHHhhccccccchhhHHHHHHHHHHHHHHc
Confidence 5543 47999999999999964 1 1 1112221 33333333222 34578888899999998 4
Q ss_pred Chh-hHHHHHHH----HHHH---HH--hccCC---CCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCch
Q 047123 445 SDG-NKRAVASC----MGSL---IK--LMECP---KPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNE 511 (579)
Q Consensus 445 ~~~-~~~~i~~~----v~~L---v~--lL~~~---~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~ 511 (579)
+++ ....+.+. +..| +. .+..+ +..+++..-+..|.++.+.......-+. +.....+++++.+...
T Consensus 532 st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~-d~iM~lflri~~s~~s 610 (859)
T KOG1241|consen 532 STDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVS-DQIMGLFLRIFESKRS 610 (859)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHH-HHHHHHHHHHHcCCcc
Confidence 443 33333333 2222 22 33111 2356677777788877665433333332 4566778888888444
Q ss_pred hhhhHHHHHHHHHHh
Q 047123 512 ALNKKFPVMVTAAVL 526 (579)
Q Consensus 512 ~~~k~~av~~L~~L~ 526 (579)
.++.+.+..++..|+
T Consensus 611 ~~v~e~a~laV~tl~ 625 (859)
T KOG1241|consen 611 AVVHEEAFLAVSTLA 625 (859)
T ss_pred ccchHHHHHHHHHHH
Confidence 434444443333333
No 69
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=4.3e-05 Score=79.14 Aligned_cols=357 Identities=14% Similarity=0.111 Sum_probs=222.0
Q ss_pred hhHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHh--ccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhh
Q 047123 157 KQDLVLFIRDIFTRL-QIGGVEFKKKALESLLQLL--KDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIV 233 (579)
Q Consensus 157 ~~~~~~~v~~Lv~~L-~~~~~~~~~~Al~~L~~l~--~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La 233 (579)
.+.++..|..|.... .+++...+..++..++..+ -+.+ ... --++.+++.+..+. +.+..+|-.|+..+.|++
T Consensus 37 ~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~-~~~--Y~~~iv~Pv~~cf~-D~d~~vRyyACEsLYNia 112 (675)
T KOG0212|consen 37 YDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIK-DAG--YLEKIVPPVLNCFS-DQDSQVRYYACESLYNIA 112 (675)
T ss_pred HHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccc-cHH--HHHHhhHHHHHhcc-CccceeeeHhHHHHHHHH
Confidence 344555555454433 3344444444444443331 1111 111 34567889999988 899999999999999999
Q ss_pred ccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC--ccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHH
Q 047123 234 SANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDP--ENAWAISAYGGVSVLIEAFRSGTALTQSHAVGA 311 (579)
Q Consensus 234 ~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~a 311 (579)
. -........-......++++..+.+..++. ++..|-.|-.+. +....|.=.+.|+.|-+.+..-++..+...+.-
T Consensus 113 K-v~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~W 190 (675)
T KOG0212|consen 113 K-VAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSW 190 (675)
T ss_pred H-HhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 8 222222222234566777777766666554 444454443211 111134335567777777777788888888888
Q ss_pred HHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHh----cCChhhHHHHHhcCcHHHHHHhhccCCCCh
Q 047123 312 IRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLA----ASGEYFRLLIIQERGLQRLMHLIQDSTSSI 387 (579)
Q Consensus 312 L~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La----~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~ 387 (579)
|..|-..|+....-.-....+-|+.+|++.+++++..+-.+|.++- +.+.. +--...++.++..+.+..+
T Consensus 191 l~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s----~d~~~~i~vlv~~l~ss~~-- 264 (675)
T KOG0212|consen 191 LYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS----MDYDDMINVLVPHLQSSEP-- 264 (675)
T ss_pred HHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc----cCcccchhhccccccCCcH--
Confidence 8777666655433223346777888999999999877776666543 22211 1114467777777777765
Q ss_pred HHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCH-HHHHHHHH---HHHHhcCChhhHHHH--HHHHHHHH
Q 047123 388 VTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNV-LLQQVSSS---LLGNLSISDGNKRAV--ASCMGSLI 460 (579)
Q Consensus 388 ~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~-~v~~~A~~---aL~~L~~~~~~~~~i--~~~v~~Lv 460 (579)
.++..|...|..+..- +..-...-+ |++..++..+.+..+ ..+..+.. .+..+..++...+.+ +.-++.|.
T Consensus 265 ~iq~~al~Wi~efV~i~g~~~l~~~s--~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~ 342 (675)
T KOG0212|consen 265 EIQLKALTWIQEFVKIPGRDLLLYLS--GILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLT 342 (675)
T ss_pred HHHHHHHHHHHHHhcCCCcchhhhhh--hhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHH
Confidence 8999998888877665 222222233 566666666666555 34444443 344444444433322 22288888
Q ss_pred HhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123 461 KLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS 530 (579)
Q Consensus 461 ~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~ 530 (579)
+.+ ..+..+.|..+..-+..|-...++.-... .+.....|+.-|.+++++ +...++.++..++.+..
T Consensus 343 ~~l-~~~~~~tri~~L~Wi~~l~~~~p~ql~~h-~~~if~tLL~tLsd~sd~-vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 343 KYL-SDDREETRIAVLNWIILLYHKAPGQLLVH-NDSIFLTLLKTLSDRSDE-VVLLALSLLASICSSSN 409 (675)
T ss_pred HHh-hcchHHHHHHHHHHHHHHHhhCcchhhhh-ccHHHHHHHHhhcCchhH-HHHHHHHHHHHHhcCcc
Confidence 999 77788999999998888877666544333 355667888888888777 77788888999987774
No 70
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.00051 Score=73.80 Aligned_cols=329 Identities=12% Similarity=0.068 Sum_probs=186.1
Q ss_pred hHHHHHHHHHHH-HhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccC
Q 047123 158 QDLVLFIRDIFT-RLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAN 236 (579)
Q Consensus 158 ~~~~~~v~~Lv~-~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~ 236 (579)
+.|-.-|+++++ .+++.|...|..|+.+++.+..+-+..+..-...+++|.++.++. ++...++..+++.++.++...
T Consensus 359 D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l 437 (859)
T KOG1241|consen 359 DDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS-DPSLWVKDTAAWTLGRIADFL 437 (859)
T ss_pred ccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc-CchhhhcchHHHHHHHHHhhc
Confidence 334445666666 889999999999999999999877666666677889999999999 889999999999999999844
Q ss_pred hhhHH-HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-----Ccc-HHHHHh---cCcHHHHHHHhcC---CCHH
Q 047123 237 DESRK-IVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-----PEN-AWAISA---YGGVSVLIEAFRS---GTAL 303 (579)
Q Consensus 237 ~~~~~-~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-----~~~-~~~i~~---~g~i~~Lv~ll~~---~~~~ 303 (579)
++... .....+.++.+++-|.+ .|.+-.++||++.+|+.. +.+ +..+.. ..+|..|++.-.. ....
T Consensus 438 ~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsN 516 (859)
T KOG1241|consen 438 PEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSN 516 (859)
T ss_pred hhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhh
Confidence 54332 22223455555555544 677899999999999821 011 111111 1122333332221 1224
Q ss_pred HHHHHHHHHHHhhcCh-hhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHH-HHHHhhc
Q 047123 304 TQSHAVGAIRNIAAVE-DIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQ-RLMHLIQ 381 (579)
Q Consensus 304 ~~~~a~~aL~nLs~~~-~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~-~Lv~ll~ 381 (579)
+|..+-.+|..+-.+. +..-.+ ++.-...++..|- ..++ ..+.+-+
T Consensus 517 LR~AAYeALmElIk~st~~vy~~-------------------v~~~~l~il~kl~-------------q~i~~~~l~~~d 564 (859)
T KOG1241|consen 517 LRSAAYEALMELIKNSTDDVYPM-------------------VQKLTLVILEKLD-------------QTISSQILSLAD 564 (859)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHH-------------------HHHHHHHHHHHHH-------------HHHHHHhccHhh
Confidence 5555555555443321 110000 1111111111100 0000 0000000
Q ss_pred cCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhc-CCHHHHHHHHHHHHHhc--CChhhHHHHHHHH
Q 047123 382 DSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKR-GNVLLQQVSSSLLGNLS--ISDGNKRAVASCM 456 (579)
Q Consensus 382 ~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~-~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~v 456 (579)
...- .+++..-+..|..+... ..+....+ ..+..|+.++++ .+..+.+.|..++..++ -.+...+++-.-.
T Consensus 565 r~q~-~eLQs~Lc~~Lq~i~rk~~~~~~~~~d---~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~ 640 (859)
T KOG1241|consen 565 RAQL-NELQSLLCNTLQSIIRKVGSDIREVSD---QIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFK 640 (859)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHccccchhHHH---HHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 0000 13444555555555443 22223333 366678888877 56677888888888887 3344444444337
Q ss_pred HHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhh-hhHHHHHHHHHH
Q 047123 457 GSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEAL-NKKFPVMVTAAV 525 (579)
Q Consensus 457 ~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~-~k~~av~~L~~L 525 (579)
|.|..-|++-....|...+.+..+.|++.=+.--.... +.....|++.|.++.-+. +|-..+++..-+
T Consensus 641 pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~-d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDI 709 (859)
T KOG1241|consen 641 PYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYC-DELMTVLVQCLSSPNLHRNVKPAILSVFGDI 709 (859)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHccCccccccccchHHHHHHHH
Confidence 77777775555677888888888888875322222221 455678999998765332 444444544433
No 71
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.15 E-value=2e-05 Score=66.81 Aligned_cols=123 Identities=17% Similarity=0.086 Sum_probs=105.9
Q ss_pred CcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHH
Q 047123 204 GNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWA 283 (579)
Q Consensus 204 g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~ 283 (579)
+.+..||.-.....+.+.+++...-|.|.+. +|-+...+.+..+++.++.-|...+....+.+...|+|++.++.+...
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 3455566533326788999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh-hhHHHHHH
Q 047123 284 ISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVE-DIKAALAE 327 (579)
Q Consensus 284 i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~-~~~~~l~~ 327 (579)
|.+.++++..+..+.+....+...++.++..|+..+ ..+..+..
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 999999999999999988888999999999888743 33444443
No 72
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=0.0027 Score=67.26 Aligned_cols=322 Identities=14% Similarity=0.113 Sum_probs=197.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHH-HHHHHHHHHHHhhccChhh
Q 047123 161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSS-IREQAVLALSIIVSANDES 239 (579)
Q Consensus 161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~-~~~~A~~aL~~La~~~~~~ 239 (579)
....+.+.+.+.+.+...+..|...+..+..+. ....+.+.+++..|-+... +.... -++.+..+....+. +-
T Consensus 133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~-dk~~~~~re~~~~a~~~~~~-~L-- 206 (569)
T KOG1242|consen 133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAII-DKKSALNREAALLAFEAAQG-NL-- 206 (569)
T ss_pred HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhc-ccchhhcHHHHHHHHHHHHH-hc--
Confidence 345677788888888888999999998887543 4455567788888888887 55433 33323322222222 11
Q ss_pred HHHHHhcCCHHHHHHHHc---cCCHHHHHHHHHHHHHhcC--CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Q 047123 240 RKIVFEEGGLGPLLRILE---TGSMPLKEKAAIGVEAITT--DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRN 314 (579)
Q Consensus 240 ~~~i~~~g~l~~Lv~lL~---~~~~~v~~~aa~~L~~Ls~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~n 314 (579)
...++.+.++.+-.+|. +....+|..+..+...+-. ++..... .++.++.-+.........+++..+..
T Consensus 207 -g~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~-----llpsll~~l~~~kWrtK~aslellg~ 280 (569)
T KOG1242|consen 207 -GPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL-----LLPSLLGSLLEAKWRTKMASLELLGA 280 (569)
T ss_pred -CCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH-----hhhhhHHHHHHHhhhhHHHHHHHHHH
Confidence 12223344444444444 4467788877777666542 2111111 23555554444456778899999998
Q ss_pred hhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHH
Q 047123 315 IAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENAL 394 (579)
Q Consensus 315 Ls~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~ 394 (579)
++......-......+||.+.+.|.+..+.+++.+..+|.+++..-++ .. | ...++.|+..+.+.+. -...+.
T Consensus 281 m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN-~d-I--~~~ip~Lld~l~dp~~---~~~e~~ 353 (569)
T KOG1242|consen 281 MADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN-PD-I--QKIIPTLLDALADPSC---YTPECL 353 (569)
T ss_pred HHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc-HH-H--HHHHHHHHHHhcCccc---chHHHH
Confidence 888777777777788999999999999999999999999999863221 11 0 2346777777766542 223333
Q ss_pred HHHHHcccchhHH-HHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CChhhHHHHHHH-HHHHHHhccCCCCH
Q 047123 395 LAISSLSLSDSAA-RILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS---ISDGNKRAVASC-MGSLIKLMECPKPV 469 (579)
Q Consensus 395 ~aL~~L~~~~~~~-~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~---~~~~~~~~i~~~-v~~Lv~lL~~~~~~ 469 (579)
..|..-.+-..+. .-+. -.++.|-.-+...+...++.++.++.|++ .++..-..+... +|.|-..+ ....+
T Consensus 354 ~~L~~ttFV~~V~~psLa---lmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~-~d~~P 429 (569)
T KOG1242|consen 354 DSLGATTFVAEVDAPSLA---LMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENL-DDAVP 429 (569)
T ss_pred HhhcceeeeeeecchhHH---HHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHh-cCCCh
Confidence 3333322221111 1111 12333444455567788899999999999 344444444444 77777777 33489
Q ss_pred hHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCC
Q 047123 470 GLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPK 509 (579)
Q Consensus 470 ~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~ 509 (579)
++|.-++.||+.+...-.+... ...++.+...+...
T Consensus 430 EvR~vaarAL~~l~e~~g~~~f----~d~~p~l~e~~~~~ 465 (569)
T KOG1242|consen 430 EVRAVAARALGALLERLGEVSF----DDLIPELSETLTSE 465 (569)
T ss_pred hHHHHHHHHHHHHHHHHHhhcc----cccccHHHHhhccc
Confidence 9999999999988754322221 34455566655443
No 73
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.07 E-value=0.0013 Score=72.41 Aligned_cols=387 Identities=15% Similarity=0.133 Sum_probs=213.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHH
Q 047123 164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIV 243 (579)
Q Consensus 164 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i 243 (579)
++-++.+| ++.-.|..|+.++..++...-..-..-+-..+++.+..++. ......+...+.++..|.......-..-
T Consensus 613 L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flr-K~~r~lr~~~l~a~~~L~~~~~~~~~~~ 689 (1233)
T KOG1824|consen 613 LPILLERL--GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLR-KNQRALRLATLTALDKLVKNYSDSIPAE 689 (1233)
T ss_pred HHHHHHHH--hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 44455555 45567888888888887543222222233456788888887 4445556666666666554111111111
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHh----hc--
Q 047123 244 FEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNI----AA-- 317 (579)
Q Consensus 244 ~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL----s~-- 317 (579)
.-+.++..+-.++...+..+-..|..+|..+...+.....-....+++.++.+++++-- |..+..++-++ ..
T Consensus 690 ~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spll--qg~al~~~l~~f~alV~t~ 767 (1233)
T KOG1824|consen 690 LLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLL--QGGALSALLLFFQALVITK 767 (1233)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccc--cchHHHHHHHHHHHHHhcC
Confidence 11233445555556667778888888888888777777666667788888888876433 22222222111 00
Q ss_pred Ch----------------hh------HHH----------HHH-c-----CCHHHHH-HHhcC-CCHHHHHHHHHHHHHHh
Q 047123 318 VE----------------DI------KAA----------LAE-E-----GAVPVLV-QSLTS-SSNLAQENAADCIATLA 357 (579)
Q Consensus 318 ~~----------------~~------~~~----------l~~-~-----g~v~~Lv-~lL~~-~~~~v~~~a~~~L~~La 357 (579)
.+ +. +.. +.. . ..+..++ .+.+. .+..++.-|.-.++.+-
T Consensus 768 ~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElg 847 (1233)
T KOG1824|consen 768 EPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELG 847 (1233)
T ss_pred CCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhc
Confidence 00 00 000 000 0 0111122 22222 24467777777777776
Q ss_pred cCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--h----hHHHHHhhcC----cHHHHHHHHHhcC
Q 047123 358 ASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--D----SAARILSSTT----SFIIQLGEFIKRG 427 (579)
Q Consensus 358 ~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~----~~~~l~~~~~----g~i~~L~~lL~~~ 427 (579)
...+. ....+.-..+++.+.+.+. +++..|..||++++.+ + ..-..++.++ -.+..|.+.+...
T Consensus 848 r~~~~----s~~~e~~~~iieaf~sp~e--dvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~ 921 (1233)
T KOG1824|consen 848 RRKDL----SPQNELKDTIIEAFNSPSE--DVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSA 921 (1233)
T ss_pred cCCCC----CcchhhHHHHHHHcCCChH--HHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHh
Confidence 54322 1112333456666666665 8999999999999885 1 1111111100 1222344444444
Q ss_pred CHHHHHHHHHHHHHhc-----CC-hhhHHHHHHH------------HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcch
Q 047123 428 NVLLQQVSSSLLGNLS-----IS-DGNKRAVASC------------MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNR 489 (579)
Q Consensus 428 ~~~v~~~A~~aL~~L~-----~~-~~~~~~i~~~------------v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~ 489 (579)
+.+....++.=+|.+- .. +..|.-+.++ +|.|-..+ .+..+..|..+..+........+..
T Consensus 922 svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~-~S~a~~~rs~vvsavKfsisd~p~~ 1000 (1233)
T KOG1824|consen 922 SVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLL-RSEASNTRSSVVSAVKFSISDQPQP 1000 (1233)
T ss_pred ccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHh-cCCCcchhhhhhheeeeeecCCCCc
Confidence 3333333333333322 22 2334344444 66666667 6667777777777766655544332
Q ss_pred hHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhccCCchHHHHHHHHhcCcc
Q 047123 490 KELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKVLQRLAGNRL 569 (579)
Q Consensus 490 ~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~~~ak~~~~~l~~~~~ 569 (579)
-... ...-|...+.++++++.+ +++.++.++...+.+++ .++ .+..+.|..+++.++.--|++++...-|-|
T Consensus 1001 id~~-lk~~ig~fl~~~~dpDl~-VrrvaLvv~nSaahNKp-----slI-rDllpeLLp~Ly~eTkvrkelIreVeMGPF 1072 (1233)
T KOG1824|consen 1001 IDPL-LKQQIGDFLKLLRDPDLE-VRRVALVVLNSAAHNKP-----SLI-RDLLPELLPLLYSETKVRKELIREVEMGPF 1072 (1233)
T ss_pred cCHH-HHHHHHHHHHHHhCCchh-HHHHHHHHHHHHHccCH-----hHH-HHHHHHHHHHHHHhhhhhHhhhhhhcccCc
Confidence 2222 134567888889988888 88888888888877664 222 456777788888877777777777766665
Q ss_pred h
Q 047123 570 K 570 (579)
Q Consensus 570 ~ 570 (579)
+
T Consensus 1073 K 1073 (1233)
T KOG1824|consen 1073 K 1073 (1233)
T ss_pred c
Confidence 5
No 74
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.0017 Score=67.62 Aligned_cols=310 Identities=15% Similarity=0.175 Sum_probs=202.3
Q ss_pred hHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHH-hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc--
Q 047123 158 QDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVA-KEGNVGYLISLLDFHHQSSIREQAVLALSIIVS-- 234 (579)
Q Consensus 158 ~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~-~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~-- 234 (579)
.....+|+-|-.++..-++..|..-+.-|.-+-... ..+.+. -..+.+-|..+|. ++++++|..+-.++.++-.
T Consensus 163 FsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P--~~~m~~yl~~~ldGLf~~Ls-D~s~eVr~~~~t~l~~fL~eI 239 (675)
T KOG0212|consen 163 FSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP--DLEMISYLPSLLDGLFNMLS-DSSDEVRTLTDTLLSEFLAEI 239 (675)
T ss_pred cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC--cHHHHhcchHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHH
Confidence 334457888888888889999988888887774322 223332 3567888899999 8899999766665554432
Q ss_pred -cChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHH-HHHHHHH--
Q 047123 235 -ANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTAL-TQSHAVG-- 310 (579)
Q Consensus 235 -~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~-~~~~a~~-- 310 (579)
+.|+.- --...++.++.-+.++.+.+|..|..-+..+..-+.......-.|++..++..+.+.... +.+.+..
T Consensus 240 ~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n 316 (675)
T KOG0212|consen 240 RSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVN 316 (675)
T ss_pred hcCcccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence 033321 223578889999999999999999888888776555555555567777777777765553 3333332
Q ss_pred -HHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHH
Q 047123 311 -AIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVT 389 (579)
Q Consensus 311 -aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~ 389 (579)
.|..+...+..+..+--...++.+.+++.+...+.+..++..+..+-...+. +-........+.|+.-+.+.++ .+
T Consensus 317 ~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd~sd--~v 393 (675)
T KOG0212|consen 317 GLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSDRSD--EV 393 (675)
T ss_pred HHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcCchh--HH
Confidence 2333444333333322233678888889999999999999999888664433 3333346677888888877776 89
Q ss_pred HHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHhccCCC
Q 047123 390 VENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASCMGSLIKLMECPK 467 (579)
Q Consensus 390 ~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~v~~Lv~lL~~~~ 467 (579)
...+...+.++|...+.... . .++..|+++......-+...+.-+++.|| -+++.. ...+..+|+..+
T Consensus 394 vl~~L~lla~i~~s~~~~~~--~--~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~I------Yr~~a~ILe~e~ 463 (675)
T KOG0212|consen 394 VLLALSLLASICSSSNSPNL--R--KFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERI------YRSIADILEREE 463 (675)
T ss_pred HHHHHHHHHHHhcCcccccH--H--HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHH------HHHHHHHHhccc
Confidence 99999999999998322121 1 46667788887777778888888999998 555422 223333443333
Q ss_pred CHhHHHHHHHHHHHhhcCC
Q 047123 468 PVGLQEAATDAVLSLLTVR 486 (579)
Q Consensus 468 ~~~v~~~a~~aL~~L~~~~ 486 (579)
+...-.....+|.....++
T Consensus 464 nl~FAstMV~~Ln~iLlTS 482 (675)
T KOG0212|consen 464 NLKFASTMVQALNTILLTS 482 (675)
T ss_pred cchHHHHHHHHHHhhhccc
Confidence 3444444445555544443
No 75
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0039 Score=67.71 Aligned_cols=282 Identities=12% Similarity=0.115 Sum_probs=174.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123 162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK 241 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~ 241 (579)
-.+..+..-|++.+.-+..-|+.+|+++++ ++... +..|...++++ +.++-+|.+|+.|...+-...|+..+
T Consensus 107 LltNslknDL~s~nq~vVglAL~alg~i~s--~Emar-----dlapeVe~Ll~-~~~~~irKKA~Lca~r~irK~P~l~e 178 (866)
T KOG1062|consen 107 LLTNSLKNDLNSSNQYVVGLALCALGNICS--PEMAR-----DLAPEVERLLQ-HRDPYIRKKAALCAVRFIRKVPDLVE 178 (866)
T ss_pred HHHHHHHhhccCCCeeehHHHHHHhhccCC--HHHhH-----HhhHHHHHHHh-CCCHHHHHHHHHHHHHHHHcCchHHH
Confidence 346677788899999999999999999984 44433 34677778999 99999999999998888776777776
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcC---------------CCHHHH
Q 047123 242 IVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRS---------------GTALTQ 305 (579)
Q Consensus 242 ~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~---------------~~~~~~ 305 (579)
.+ ++...++|.+.+..|.......+..++. +++.-..+-+ .++.++..|+. .+|-+|
T Consensus 179 ~f-----~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQ 251 (866)
T KOG1062|consen 179 HF-----VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQ 251 (866)
T ss_pred Hh-----hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHH
Confidence 66 6677788888777777777777777774 4444444433 44555554431 245567
Q ss_pred HHHHHHHHHhhcChh-hHHHHHHcCCHHHHHHHhcCC----C--HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHH
Q 047123 306 SHAVGAIRNIAAVED-IKAALAEEGAVPVLVQSLTSS----S--NLAQENAADCIATLAASGEYFRLLIIQERGLQRLMH 378 (579)
Q Consensus 306 ~~a~~aL~nLs~~~~-~~~~l~~~g~v~~Lv~lL~~~----~--~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ 378 (579)
...++.|+-|-.++. ..+.|.+ .|-+..... + ..+...++.++..+-... ..|. -++..|-+
T Consensus 252 i~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~GnAILYE~V~TI~~I~~~~-~Lrv-----lainiLgk 320 (866)
T KOG1062|consen 252 IRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNAGNAILYECVRTIMDIRSNS-GLRV-----LAINILGK 320 (866)
T ss_pred HHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccchhHHHHHHHHHHHhccCCc-hHHH-----HHHHHHHH
Confidence 777776666655332 2333322 222222111 1 134444555544443211 1121 13445555
Q ss_pred hhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHH----HHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHH
Q 047123 379 LIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFII----QLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVAS 454 (579)
Q Consensus 379 ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~----~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~ 454 (579)
++.+.+. .++-.|...|..+... ++.++. .+++.|++.+..++..|...+..|......+..
T Consensus 321 FL~n~d~--NirYvaLn~L~r~V~~---------d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~m--- 386 (866)
T KOG1062|consen 321 FLLNRDN--NIRYVALNMLLRVVQQ---------DPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVM--- 386 (866)
T ss_pred HhcCCcc--ceeeeehhhHHhhhcC---------CcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHH---
Confidence 5555443 4555555555544433 222332 477888999999999999999988744333322
Q ss_pred HHHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123 455 CMGSLIKLMECPKPVGLQEAATDAVLSLLTV 485 (579)
Q Consensus 455 ~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~ 485 (579)
+..|+.+| +..+.+.+..++.-+..++..
T Consensus 387 -v~eLl~fL-~~~d~~~k~~~as~I~~laEk 415 (866)
T KOG1062|consen 387 -VKELLEFL-ESSDEDFKADIASKIAELAEK 415 (866)
T ss_pred -HHHHHHHH-HhccHHHHHHHHHHHHHHHHh
Confidence 55677777 444777787777777777643
No 76
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.002 Score=68.74 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=68.7
Q ss_pred chhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCC--HHHHHHHHHHHHHhh
Q 047123 156 HKQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQ--SSIREQAVLALSIIV 233 (579)
Q Consensus 156 ~~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~--~~~~~~A~~aL~~La 233 (579)
+.+-++..+..+-.-|.+.|+-...-|+.+++++... +++..+. +-+-++|- +++ .-++..|+-+|..|-
T Consensus 105 n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~-----~DI~KlLv-S~~~~~~vkqkaALclL~L~ 176 (938)
T KOG1077|consen 105 NSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA-----DDIPKLLV-SGSSMDYVKQKAALCLLRLF 176 (938)
T ss_pred chHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh-----hhhHHHHh-CCcchHHHHHHHHHHHHHHH
Confidence 3455666677777888889999999999999998532 2332222 22225565 554 678888888888777
Q ss_pred ccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 047123 234 SANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAIT 275 (579)
Q Consensus 234 ~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls 275 (579)
..+|+.. --.+....++.+|++.++.+...+...+..|+
T Consensus 177 r~spDl~---~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lv 215 (938)
T KOG1077|consen 177 RKSPDLV---NPGEWAQRIVHLLDDQHMGVVTAATSLIEALV 215 (938)
T ss_pred hcCcccc---ChhhHHHHHHHHhCccccceeeehHHHHHHHH
Confidence 7444432 22245666777776665555555555555555
No 77
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.0001 Score=75.94 Aligned_cols=189 Identities=11% Similarity=0.071 Sum_probs=136.8
Q ss_pred HHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccC
Q 047123 180 KKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETG 259 (579)
Q Consensus 180 ~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~ 259 (579)
..++.+|..+.+.-.--+.-+.+...+++|+++|+ .++..+.-.+...+++........+..+.+.|.+..|+..+.+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls-~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALS-NPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhc-CccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 34466666665544444555567888999999999 77766666778888888776777889999999999999999988
Q ss_pred CHHHHHHHHHHHHHhcCCCc--cHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC----hhhHHHHHHcC----
Q 047123 260 SMPLKEKAAIGVEAITTDPE--NAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV----EDIKAALAEEG---- 329 (579)
Q Consensus 260 ~~~v~~~aa~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~----~~~~~~l~~~g---- 329 (579)
+...|.+..|.|.++..+.+ .+-.+...-++..++++++++...+|+.....|+|+..+ ++.++.+....
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 88999999999999996443 345666677889999999999999999999999999762 22222222111
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 047123 330 AVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQ 369 (579)
Q Consensus 330 ~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~ 369 (579)
....++..+...+|-.....+..|.+++..++..+..+.+
T Consensus 566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~ 605 (743)
T COG5369 566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQS 605 (743)
T ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHh
Confidence 2344555566666654445567777776666665555443
No 78
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.94 E-value=0.006 Score=63.80 Aligned_cols=371 Identities=15% Similarity=0.075 Sum_probs=213.1
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH--HH--
Q 047123 167 IFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR--KI-- 242 (579)
Q Consensus 167 Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~--~~-- 242 (579)
..+.-+..+.+.+..|.-||..++.-..+..+...+.-.-....+.++ +++.++...|+..-..++...-+.. ..
T Consensus 226 vceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mk-s~nd~va~qavEfWsticeEeid~~~e~~~~ 304 (858)
T COG5215 226 VCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMK-SQNDEVAIQAVEFWSTICEEEIDGEMEDKYL 304 (858)
T ss_pred eehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHHhhhHHHHhhc
Confidence 345556778899999999999998766666666666666666777888 9999999999999888876211110 00
Q ss_pred ---------HH---hcCCHHHHHHHHccC-------CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHH----HhcC
Q 047123 243 ---------VF---EEGGLGPLLRILETG-------SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIE----AFRS 299 (579)
Q Consensus 243 ---------i~---~~g~l~~Lv~lL~~~-------~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~----ll~~ 299 (579)
+. -..++|.|+.+|... +-.+...|..+|.-.+.... .-.+++... -+++
T Consensus 305 pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g-------d~i~~pVl~FvEqni~~ 377 (858)
T COG5215 305 PEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG-------DKIMRPVLGFVEQNIRS 377 (858)
T ss_pred ccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh-------hHhHHHHHHHHHHhccC
Confidence 11 134789999999762 33456666777766653211 113333333 3456
Q ss_pred CCHHHHHHHHHHHHHhhcCh--hhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHH
Q 047123 300 GTALTQSHAVGAIRNIAAVE--DIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLM 377 (579)
Q Consensus 300 ~~~~~~~~a~~aL~nLs~~~--~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv 377 (579)
++..-++.++.++..+-..+ ..+..++ ..++|.+...+.+..--++..++||++.++.+ ....+-..|-++..+
T Consensus 378 ~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~---va~~i~p~~Hl~~~v 453 (858)
T COG5215 378 ESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADH---VAMIISPCGHLVLEV 453 (858)
T ss_pred chhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHH---HHHhcCccccccHHH
Confidence 77788999999998886633 3344444 35788888888877778999999999999863 222332344443333
Q ss_pred Hhh-ccCCCChHHHHHHHHHHHHcccc--hhH---HHHHhh-cCcHHHHHHH---------------------HHhc---
Q 047123 378 HLI-QDSTSSIVTVENALLAISSLSLS--DSA---ARILSS-TTSFIIQLGE---------------------FIKR--- 426 (579)
Q Consensus 378 ~ll-~~~~~~~~~~~~A~~aL~~L~~~--~~~---~~l~~~-~~g~i~~L~~---------------------lL~~--- 426 (579)
+.+ ..-.+++....++++...||..+ +.. ..++.. =...+..|++ ++.-
T Consensus 454 sa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d 533 (858)
T COG5215 454 SASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPD 533 (858)
T ss_pred HHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcch
Confidence 322 11112235667777777777664 111 011100 0000001110 0000
Q ss_pred ------------------------------C----CHHHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCCCHh
Q 047123 427 ------------------------------G----NVLLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPKPVG 470 (579)
Q Consensus 427 ------------------------------~----~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~~~~ 470 (579)
. ..++|.+-...|..+. ..+.-.+...+. +..++++|+..++..
T Consensus 534 ~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~ 613 (858)
T COG5215 534 AVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTT 613 (858)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCch
Confidence 0 0112222222222222 111111112222 677788886666777
Q ss_pred HHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhh
Q 047123 471 LQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLA 550 (579)
Q Consensus 471 v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~ 550 (579)
+-+-...++++|+..-+.+-+.-. ...+|.|.+-|+..+.. +-..+++.+..|+.+-. ..-.+........|++-+
T Consensus 614 ~~~dV~~aIsal~~sl~e~Fe~y~-~~fiPyl~~aln~~d~~-v~~~avglvgdlantl~--~df~~y~d~~ms~LvQ~l 689 (858)
T COG5215 614 AFGDVYTAISALSTSLEERFEQYA-SKFIPYLTRALNCTDRF-VLNSAVGLVGDLANTLG--TDFNIYADVLMSSLVQCL 689 (858)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHhcchhHH-HHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHh
Confidence 777788888888875443333332 56778888888655444 55667777777776543 333344455566677766
Q ss_pred ccC
Q 047123 551 ETE 553 (579)
Q Consensus 551 ~~~ 553 (579)
.++
T Consensus 690 ss~ 692 (858)
T COG5215 690 SSE 692 (858)
T ss_pred cCh
Confidence 665
No 79
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.93 E-value=0.005 Score=66.19 Aligned_cols=368 Identities=13% Similarity=0.103 Sum_probs=186.8
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHH
Q 047123 175 GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLR 254 (579)
Q Consensus 175 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~ 254 (579)
+.+.|.....+...++.-... ...-.-.+.+..+-..|. +.+..+|..++-++..++....-+.-.-++ .++.+|.+
T Consensus 525 SwqaRhTgIkivqqIail~Gc-svlphl~~lv~ii~~gl~-De~qkVR~itAlalsalaeaa~Pygie~fD-sVlkpLwk 601 (1172)
T KOG0213|consen 525 SWQARHTGIKIVQQIAILSGC-SVLPHLKPLVKIIEHGLK-DEQQKVRTITALALSALAEAATPYGIEQFD-SVLKPLWK 601 (1172)
T ss_pred chhhhchhhHHHHHHHHHhcc-hhhhhhHHHHHHHHHhhc-ccchhhhhHHHHHHHHHHHhcCCcchHHHH-HHHHHHHH
Confidence 666776666666555421100 000011222333334455 566788888888888887622222211111 12333333
Q ss_pred HHccCCHHHHHHHHHHHHHhcC--CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHH
Q 047123 255 ILETGSMPLKEKAAIGVEAITT--DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVP 332 (579)
Q Consensus 255 lL~~~~~~v~~~aa~~L~~Ls~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~ 332 (579)
=..++....-..-..++..|.. +++.. ......++..++.-..+.|.+.+...+.++..+|..+..-........+|
T Consensus 602 gir~hrgk~laafLkAigyliplmd~eya-~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp 680 (1172)
T KOG0213|consen 602 GIRQHRGKELAAFLKAIGYLIPLMDAEYA-SYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILP 680 (1172)
T ss_pred HHHHccChHHHHHHHHHhhccccccHHHH-HHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhH
Confidence 3333333334444556666663 22221 12223345666666778888999999999999988776666666556677
Q ss_pred HHHHHhcCC-------C-HHHHHHHHHHHHHHh-------------cCChhhHHHHHhcCcHHHHHHhhccCCCChHHHH
Q 047123 333 VLVQSLTSS-------S-NLAQENAADCIATLA-------------ASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVE 391 (579)
Q Consensus 333 ~Lv~lL~~~-------~-~~v~~~a~~~L~~La-------------~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~ 391 (579)
.++..+-.. + ..+...+...-..+- ..++.+|.+. .+.+..++..+-...-++...+
T Consensus 681 ~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~--~etv~ri~~~lg~~diderleE 758 (1172)
T KOG0213|consen 681 EFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMV--AETVSRIVGRLGAADIDERLEE 758 (1172)
T ss_pred HHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHH--HHHHHHHHhccccccccHHHHH
Confidence 766554211 1 112222222111111 1111122211 1223333333322221112222
Q ss_pred HHHHHH-HHcccch------------hHHHHHhh----cCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhH---HH
Q 047123 392 NALLAI-SSLSLSD------------SAARILSS----TTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNK---RA 451 (579)
Q Consensus 392 ~A~~aL-~~L~~~~------------~~~~l~~~----~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~---~~ 451 (579)
.-...| ..+.... ....+... -+-.+...+..|++.++.+++.|+..+..|+.--..+ +.
T Consensus 759 ~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~ 838 (1172)
T KOG0213|consen 759 RLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKL 838 (1172)
T ss_pred HHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHH
Confidence 211111 1111110 01111110 0023444666788999999999999999998211111 11
Q ss_pred HHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC-
Q 047123 452 VASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS- 530 (579)
Q Consensus 452 i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~- 530 (579)
+...=-.|...| ....+++.-....||..+.+....-+.+---.+.++.|.-.|.+++.. +++..+..+..++...+
T Consensus 839 m~~lGvvLyEyl-geeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheK-Vqen~IdLvg~IadrgpE 916 (1172)
T KOG0213|consen 839 MGHLGVVLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEK-VQENCIDLVGTIADRGPE 916 (1172)
T ss_pred HHHhhHHHHHhc-CcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHH-HHHHHHHHHHHHHhcCcc
Confidence 222123556677 677889988888888887765433222222246778899999988877 78888888888876553
Q ss_pred -hhHHHHHHHcCchHHHHhhhccC
Q 047123 531 -NGCRKRLVAAGAYQHLQKLAETE 553 (579)
Q Consensus 531 -~~~r~~i~~~g~~~~L~~L~~~~ 553 (579)
...|+.|. ++-.|+.++++.
T Consensus 917 ~v~aREWMR---IcfeLlelLkah 937 (1172)
T KOG0213|consen 917 YVSAREWMR---ICFELLELLKAH 937 (1172)
T ss_pred cCCHHHHHH---HHHHHHHHHHHH
Confidence 23566665 455566666554
No 80
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.90 E-value=0.0058 Score=62.79 Aligned_cols=218 Identities=20% Similarity=0.225 Sum_probs=155.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123 162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK 241 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~ 241 (579)
..++.+...+.+.++.+|..|+.+|+.+- + ...++.|++++..+++..+|..++.+|+.+..
T Consensus 74 ~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~---------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~------- 135 (335)
T COG1413 74 EAVPLLRELLSDEDPRVRDAAADALGELG--D---------PEAVPPLVELLENDENEGVRAAAARALGKLGD------- 135 (335)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccC--C---------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-------
Confidence 36899999999999999999999887773 2 33589999988834789999999999999988
Q ss_pred HHHhcCCHHHHHHHHccCCH------------HHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHH
Q 047123 242 IVFEEGGLGPLLRILETGSM------------PLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAV 309 (579)
Q Consensus 242 ~i~~~g~l~~Lv~lL~~~~~------------~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~ 309 (579)
...+.+++..+.+... .++..+...|..+-. ...++.+..++.+.+..++..+.
T Consensus 136 ----~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa 201 (335)
T COG1413 136 ----ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD----------PEAIPLLIELLEDEDADVRRAAA 201 (335)
T ss_pred ----hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHH
Confidence 4568899999988652 244455555544432 33678899999999999999999
Q ss_pred HHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHH
Q 047123 310 GAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVT 389 (579)
Q Consensus 310 ~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~ 389 (579)
.+|..+.... ....+.+...+.+.+..++..++..|..+-. ...+..+...+...+. ..
T Consensus 202 ~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~-----------~~~~~~l~~~l~~~~~--~~ 260 (335)
T COG1413 202 SALGQLGSEN--------VEAADLLVKALSDESLEVRKAALLALGEIGD-----------EEAVDALAKALEDEDV--IL 260 (335)
T ss_pred HHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc-----------chhHHHHHHHHhccch--HH
Confidence 9998877654 3456777888899999999999988887644 2235666666666654 34
Q ss_pred HHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123 390 VENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS 443 (579)
Q Consensus 390 ~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~ 443 (579)
...+..++..+-.. .....+...+.+....++..+..++..+.
T Consensus 261 ~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 261 ALLAAAALGALDLA-----------EAALPLLLLLIDEANAVRLEAALALGQIG 303 (335)
T ss_pred HHHHHHHhcccCch-----------hhHHHHHHHhhcchhhHHHHHHHHHHhhc
Confidence 44443333311111 23445555666666677777776666665
No 81
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.90 E-value=0.0031 Score=65.19 Aligned_cols=254 Identities=18% Similarity=0.112 Sum_probs=163.9
Q ss_pred HHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccC--CH
Q 047123 184 ESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETG--SM 261 (579)
Q Consensus 184 ~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~ 261 (579)
..|..+.+..+.-+..+.-..+.+.+..++- +++.++|-.+.++++.+.. +++....+.+.+.---++.-|... +.
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL-~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~ 82 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLL-SDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKND 82 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCCh
Confidence 3455555556655555554455666665444 5559999999999999999 889999999888777777777664 44
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCC
Q 047123 262 PLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSS 341 (579)
Q Consensus 262 ~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~ 341 (579)
.-+++|...+..+...+..... ...|+++.++.+..+.+...+..+..+|+.++.. +.+-+.+.|++..+++.+.++
T Consensus 83 ~ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d~ 159 (371)
T PF14664_consen 83 VEREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRALIDG 159 (371)
T ss_pred HHHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHhc
Confidence 5688999999888754333222 2567889999999999999999999999999873 234566899999999999877
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCC-----CCh--HHHHHHHHHHHHcccc-hhHHHHHhhc
Q 047123 342 SNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDST-----SSI--VTVENALLAISSLSLS-DSAARILSST 413 (579)
Q Consensus 342 ~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~-----~~~--~~~~~A~~aL~~L~~~-~~~~~l~~~~ 413 (579)
...+.+..+.++..+...+ ..|..+...--++.++.-+.+.. .+. +....+..++..+-.. +..-.+-..+
T Consensus 160 ~~~~~~~l~~~lL~lLd~p-~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~ 238 (371)
T PF14664_consen 160 SFSISESLLDTLLYLLDSP-RTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND 238 (371)
T ss_pred cHhHHHHHHHHHHHHhCCc-chhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence 6678888888888887754 44655555445666666443331 111 1122222222222221 1111111111
Q ss_pred CcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123 414 TSFIIQLGEFIKRGNVLLQQVSSSLLGNLS 443 (579)
Q Consensus 414 ~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~ 443 (579)
..++..|+..|...+++++......+..+-
T Consensus 239 ~~~lksLv~~L~~p~~~ir~~Ildll~dll 268 (371)
T PF14664_consen 239 FRGLKSLVDSLRLPNPEIRKAILDLLFDLL 268 (371)
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 135555666666666666665555555554
No 82
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.88 E-value=3.2e-05 Score=52.58 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=38.3
Q ss_pred ChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc
Q 047123 193 DDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVS 234 (579)
Q Consensus 193 ~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~ 234 (579)
+++++..+++.|++|.|+++|+ ++++++++.|+++|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~-~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLK-SPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTT-SSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHc-CCCHHHHHHHHHHHHHHhC
Confidence 4678899999999999999999 9999999999999999974
No 83
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0045 Score=67.05 Aligned_cols=320 Identities=15% Similarity=0.129 Sum_probs=177.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHH
Q 047123 164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIV 243 (579)
Q Consensus 164 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i 243 (579)
|..+.+-|...++..|..|++.|..+=- -++..=.+-.+-+... +..+-+|..|+-+|-.|=.-+++.+.++
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsIRv-------p~IaPI~llAIk~~~~-D~s~yVRk~AA~AIpKLYsLd~e~k~qL 181 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSIRV-------PMIAPIMLLAIKKAVT-DPSPYVRKTAAHAIPKLYSLDPEQKDQL 181 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhcch-------hhHHHHHHHHHHHHhc-CCcHHHHHHHHHhhHHHhcCChhhHHHH
Confidence 5566666777777777777777755411 0000001111222334 5667788888777777755455655544
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC----h
Q 047123 244 FEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV----E 319 (579)
Q Consensus 244 ~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~----~ 319 (579)
+..+-.+|.+.++-|...|+.+....+- +.-..| ++--+.|+.++.+-+..-|...+..|..-+.+ |
T Consensus 182 -----~e~I~~LLaD~splVvgsAv~AF~evCP--erldLI--HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P 252 (968)
T KOG1060|consen 182 -----EEVIKKLLADRSPLVVGSAVMAFEEVCP--ERLDLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDP 252 (968)
T ss_pred -----HHHHHHHhcCCCCcchhHHHHHHHHhch--hHHHHh--hHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCc
Confidence 4455566677777777777766666652 222222 33345666666655555555555555443321 1
Q ss_pred hhHHHHH-H--------------------cCCHHHHH----HHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHH
Q 047123 320 DIKAALA-E--------------------EGAVPVLV----QSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQ 374 (579)
Q Consensus 320 ~~~~~l~-~--------------------~g~v~~Lv----~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~ 374 (579)
..-.... + .--+..|+ .++.+.++.+...++.+.+.++..... .++++
T Consensus 253 ~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~-------~~i~k 325 (968)
T KOG1060|consen 253 TVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV-------TKIAK 325 (968)
T ss_pred cccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH-------HHHHH
Confidence 0000000 0 00111222 344667888888899999998864322 44578
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcH-HHHHHHHH--hcCCHHHHHHHHHHHHHhcCChhhHHH
Q 047123 375 RLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSF-IIQLGEFI--KRGNVLLQQVSSSLLGNLSISDGNKRA 451 (579)
Q Consensus 375 ~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~-i~~L~~lL--~~~~~~v~~~A~~aL~~L~~~~~~~~~ 451 (579)
.|+++|.+.. .+|...+..|..++... ++. .+.+-.+. .++...++..-..+|.+|+........
T Consensus 326 aLvrLLrs~~---~vqyvvL~nIa~~s~~~---------~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~I 393 (968)
T KOG1060|consen 326 ALVRLLRSNR---EVQYVVLQNIATISIKR---------PTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEI 393 (968)
T ss_pred HHHHHHhcCC---cchhhhHHHHHHHHhcc---------hhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHH
Confidence 9999888766 47777777777666540 022 22222221 233445666667778888733222222
Q ss_pred HHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123 452 VASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS 530 (579)
Q Consensus 452 i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~ 530 (579)
++.|...+ ++.+..+-..+.++|+..+..... + ....+..|+++|.+++.. +...++.++..|-...+
T Consensus 394 ----LrE~q~YI-~s~d~~faa~aV~AiGrCA~~~~s----v-~~tCL~gLv~Llsshde~-Vv~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 394 ----LRELQTYI-KSSDRSFAAAAVKAIGRCASRIGS----V-TDTCLNGLVQLLSSHDEL-VVAEAVVVIKRLLQKDP 461 (968)
T ss_pred ----HHHHHHHH-hcCchhHHHHHHHHHHHHHHhhCc----h-hhHHHHHHHHHHhcccch-hHHHHHHHHHHHHhhCh
Confidence 22333444 333445777777888777654321 1 245567899999988777 44555666777766654
No 84
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.87 E-value=2e-05 Score=53.62 Aligned_cols=40 Identities=25% Similarity=0.546 Sum_probs=38.0
Q ss_pred ChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 047123 236 NDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAIT 275 (579)
Q Consensus 236 ~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls 275 (579)
+++++..+++.|++++|+++|++++.++++.|+++|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999999999997
No 85
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.015 Score=62.64 Aligned_cols=218 Identities=14% Similarity=0.087 Sum_probs=133.6
Q ss_pred HhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCH
Q 047123 170 RLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGL 249 (579)
Q Consensus 170 ~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l 249 (579)
-|.+.+....--|+..|..+. .+.-.+. .-+-++.||. +..+-+|..|+.++..+.. .+.+.+. -.+
T Consensus 117 dl~S~n~ye~giAL~GLS~fv--TpdLARD-----La~Dv~tLL~-sskpYvRKkAIl~lykvFL---kYPeAlr--~~F 183 (877)
T KOG1059|consen 117 DLNSSNVYEVGLALSGLSCIV--TPDLARD-----LADDVFTLLN-SSKPYVRKKAILLLYKVFL---KYPEALR--PCF 183 (877)
T ss_pred HhccCccchhhheeccccccc--CchhhHH-----HHHHHHHHHh-cCchHHHHHHHHHHHHHHH---hhhHhHh--hhH
Confidence 344555555556666665554 3333322 2456788999 9999999999999999887 4555553 458
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHH--------h--cC-----------------------cHHHHHH
Q 047123 250 GPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAIS--------A--YG-----------------------GVSVLIE 295 (579)
Q Consensus 250 ~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~--------~--~g-----------------------~i~~Lv~ 295 (579)
|.|..-|+++++.|+..|..+++.|+. +|.|...++ . .+ .+++|.+
T Consensus 184 prL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~ 263 (877)
T KOG1059|consen 184 PRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITE 263 (877)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHH
Confidence 999999999999999999999999994 666543322 0 01 1222222
Q ss_pred HhcCCCH-HHHHHHHHHHH--HhhcC-hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 047123 296 AFRSGTA-LTQSHAVGAIR--NIAAV-EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQER 371 (579)
Q Consensus 296 ll~~~~~-~~~~~a~~aL~--nLs~~-~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g 371 (579)
++.+... .+...++.++. |++.. +++- ..+. -++..|-.++.+.++.++..++-++..+...++..-..
T Consensus 264 li~sT~AmSLlYECvNTVVa~s~s~g~~d~~-asiq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa----- 336 (877)
T KOG1059|consen 264 LMESTVAMSLLYECVNTVVAVSMSSGMSDHS-ASIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA----- 336 (877)
T ss_pred HHHhhHHHHHHHHHHHHheeehhccCCCCcH-HHHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----
Confidence 2222111 11122222221 22211 1111 1110 13455555667788888888888888888766542111
Q ss_pred cHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHH
Q 047123 372 GLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARI 409 (579)
Q Consensus 372 ~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l 409 (579)
--+.+++.|.+.+. .++..|+..|..+...++...+
T Consensus 337 ~kdlIlrcL~DkD~--SIRlrALdLl~gmVskkNl~eI 372 (877)
T KOG1059|consen 337 HKDLILRCLDDKDE--SIRLRALDLLYGMVSKKNLMEI 372 (877)
T ss_pred hHHHHHHHhccCCc--hhHHHHHHHHHHHhhhhhHHHH
Confidence 13456777777776 7899999999998887554443
No 86
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.84 E-value=0.0023 Score=66.04 Aligned_cols=242 Identities=14% Similarity=0.066 Sum_probs=176.8
Q ss_pred CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcC--CCHHHHHHHHHHHH
Q 047123 277 DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTS--SSNLAQENAADCIA 354 (579)
Q Consensus 277 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~--~~~~v~~~a~~~L~ 354 (579)
+++.+..+.-....+.+..++-+++..++..+.++++.+..+++.-..+.+.+.--.++.-|.. .+..=+++|+..+.
T Consensus 14 ~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR 93 (371)
T PF14664_consen 14 HPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIR 93 (371)
T ss_pred CchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHH
Confidence 4444444443344455554555556999999999999999998888888887755556666643 34556788999888
Q ss_pred HHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHH
Q 047123 355 TLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQV 434 (579)
Q Consensus 355 ~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~ 434 (579)
.+....... .-...|.+..++.+.+..++ ..+..|..+|..++.. +.+.+... |++..|++.+-.+..++.+.
T Consensus 94 ~~l~~~~~~--~~~~~~vvralvaiae~~~D--~lr~~cletL~El~l~-~P~lv~~~--gG~~~L~~~l~d~~~~~~~~ 166 (371)
T PF14664_consen 94 AFLEIKKGP--KEIPRGVVRALVAIAEHEDD--RLRRICLETLCELALL-NPELVAEC--GGIRVLLRALIDGSFSISES 166 (371)
T ss_pred HHHHhcCCc--ccCCHHHHHHHHHHHhCCch--HHHHHHHHHHHHHHhh-CHHHHHHc--CCHHHHHHHHHhccHhHHHH
Confidence 877642221 12346778999999888665 8999999999998876 33455567 99999999998887788888
Q ss_pred HHHHHHHhcCChhhHHHHHHH--HHHHHHhccCC------CCH--hHHHHHHHHHHHhhcCCcchhHHHhhc-ccHHHHH
Q 047123 435 SSSLLGNLSISDGNKRAVASC--MGSLIKLMECP------KPV--GLQEAATDAVLSLLTVRSNRKELVRDE-KSVMRLM 503 (579)
Q Consensus 435 A~~aL~~L~~~~~~~~~i~~~--v~~Lv~lL~~~------~~~--~v~~~a~~aL~~L~~~~~~~~~~~~~~-~~i~~Lv 503 (579)
.+.++..+-.+|..|+++... ++.++.-..+. ++. +--..+..++..+.++.+..-.+..++ .++..|+
T Consensus 167 l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv 246 (371)
T PF14664_consen 167 LLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLV 246 (371)
T ss_pred HHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHH
Confidence 889999999999999988775 66665543122 122 355678888999888887766666555 7899999
Q ss_pred hhcCCCchhhhhHHHHHHHHHHh
Q 047123 504 QMLDPKNEALNKKFPVMVTAAVL 526 (579)
Q Consensus 504 ~lL~~~~~~~~k~~av~~L~~L~ 526 (579)
+.|.-+.++ .++..+..+..+.
T Consensus 247 ~~L~~p~~~-ir~~Ildll~dll 268 (371)
T PF14664_consen 247 DSLRLPNPE-IRKAILDLLFDLL 268 (371)
T ss_pred HHHcCCCHH-HHHHHHHHHHHHH
Confidence 999988877 7888887777655
No 87
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.84 E-value=0.0061 Score=65.53 Aligned_cols=296 Identities=11% Similarity=0.084 Sum_probs=171.1
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 047123 207 GYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISA 286 (579)
Q Consensus 207 ~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~ 286 (579)
-.+.+=.. ++|.+.....+.++..+|. .+..-...+....+|.++.......+..-..--.-|...+. +.+..+..
T Consensus 639 lil~rEf~-sPDeemkkivLKVv~qcc~-t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv--~ia~KvG~ 714 (1172)
T KOG0213|consen 639 LILIREFG-SPDEEMKKIVLKVVKQCCA-TDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTV--EIAAKVGS 714 (1172)
T ss_pred HHHHHhhC-CChHHHHHHHHHHHHHHhc-ccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHH--HHHHHhCc
Confidence 33444445 7888999999999999998 77777777778888888887654321110000011111110 11222333
Q ss_pred cCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC---hhhHHHHHHcCCHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCh
Q 047123 287 YGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV---EDIKAALAEEGAVPVLVQSLTSS--SNLAQENAADCIATLAASGE 361 (579)
Q Consensus 287 ~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~---~~~~~~l~~~g~v~~Lv~lL~~~--~~~v~~~a~~~L~~La~~~~ 361 (579)
...|..++.=+.++.+..+.-+..++.++... .+.-.. .++..+..++..++.+ +..+.-....++.|--..
T Consensus 715 ~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~dider-leE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~-- 791 (1172)
T KOG0213|consen 715 DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDER-LEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG-- 791 (1172)
T ss_pred hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHH-HHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh--
Confidence 34567777777788887777666666554321 111111 1223444555555433 223333444443331110
Q ss_pred hhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCc-HHHHHHHHHhcCCHHHHHHHHHHH
Q 047123 362 YFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARILSSTTS-FIIQLGEFIKRGNVLLQQVSSSLL 439 (579)
Q Consensus 362 ~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g-~i~~L~~lL~~~~~~v~~~A~~aL 439 (579)
|..-.-...+...+..|.+.+. .++..|+..+..++.- ..+...-.. | .--.|.+.|....+++.-..+.|+
T Consensus 792 --r~kpylpqi~stiL~rLnnksa--~vRqqaadlis~la~Vlktc~ee~~m--~~lGvvLyEylgeeypEvLgsILgAi 865 (1172)
T KOG0213|consen 792 --RVKPYLPQICSTILWRLNNKSA--KVRQQAADLISSLAKVLKTCGEEKLM--GHLGVVLYEYLGEEYPEVLGSILGAI 865 (1172)
T ss_pred --ccccchHHHHHHHHHHhcCCCh--hHHHHHHHHHHHHHHHHHhccHHHHH--HHhhHHHHHhcCcccHHHHHHHHHHH
Confidence 0000001234455556666665 8999999999988876 433222111 2 222477778888888887777777
Q ss_pred HHhcCChhh---HHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcch---hHHHhhcccHHHHHhhcCCCchhh
Q 047123 440 GNLSISDGN---KRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNR---KELVRDEKSVMRLMQMLDPKNEAL 513 (579)
Q Consensus 440 ~~L~~~~~~---~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~---~~~~~~~~~i~~Lv~lL~~~~~~~ 513 (579)
+.+...-.. ..-+.+-+|.|.-+| +.++..+++++...++.++...+.. ++.+ +..-.|+++|...+..
T Consensus 866 kaI~nvigm~km~pPi~dllPrltPIL-knrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkahkK~- 940 (1172)
T KOG0213|consen 866 KAIVNVIGMTKMTPPIKDLLPRLTPIL-KNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAHKKE- 940 (1172)
T ss_pred HHHHHhccccccCCChhhhcccchHhh-hhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHHHHH-
Confidence 777632222 223333389999999 8889999999999999998765542 2222 2345688888877766
Q ss_pred hhHHHHH
Q 047123 514 NKKFPVM 520 (579)
Q Consensus 514 ~k~~av~ 520 (579)
.++.++.
T Consensus 941 iRRaa~n 947 (1172)
T KOG0213|consen 941 IRRAAVN 947 (1172)
T ss_pred HHHHHHh
Confidence 5665554
No 88
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.76 E-value=0.001 Score=73.73 Aligned_cols=222 Identities=15% Similarity=0.193 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHh-hccChhhHHHHHhcCCHHHHHHHH
Q 047123 178 FKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSII-VSANDESRKIVFEEGGLGPLLRIL 256 (579)
Q Consensus 178 ~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~L-a~~~~~~~~~i~~~g~l~~Lv~lL 256 (579)
-|..|+..|..+..-.+=.+.....-|..|..++||+ ++..+.+..-+.+-..| +. ++.|+..++.+++-.-++++|
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQ-S~a~ELrpiLVFIWAKILAv-D~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQ-SSARELRPILVFIWAKILAV-DPSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhc-cchHhhhhhHHHHHHHHHhc-CchhHHHHHhccCceeEEEEe
Confidence 3678888888888777777777788999999999999 98888888776666644 55 899999999999999999999
Q ss_pred ccC---CHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhc-ChhhHHHHHHcCC
Q 047123 257 ETG---SMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSG-TALTQSHAVGAIRNIAA-VEDIKAALAEEGA 330 (579)
Q Consensus 257 ~~~---~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~ 330 (579)
..+ +++-+..++-+|..++. .+-.+....+.+.+..-++++.++ .+-++...+-+|..|-. +++.|-.-.+.++
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A 643 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA 643 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence 873 56889999999999996 445677777888888888999885 67888999999999976 5666666668889
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCC----hhhHHH-----------H-HhcCcH---HHHHHhhccCCCChHHHH
Q 047123 331 VPVLVQSLTSSSNLAQENAADCIATLAASG----EYFRLL-----------I-IQERGL---QRLMHLIQDSTSSIVTVE 391 (579)
Q Consensus 331 v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~----~~~r~~-----------l-~~~g~i---~~Lv~ll~~~~~~~~~~~ 391 (579)
.+.|+.+|.+..++|+..|+.+|..+.... ++.... + ++.-.. ..++.++..+++ -++.
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsp--lvr~ 721 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSP--LVRT 721 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccch--HHHH
Confidence 999999999999999999999999987631 111111 1 111112 245555555554 5666
Q ss_pred HHHHHHHHcccc
Q 047123 392 NALLAISSLSLS 403 (579)
Q Consensus 392 ~A~~aL~~L~~~ 403 (579)
..+-+|..+..+
T Consensus 722 ev~v~ls~~~~g 733 (1387)
T KOG1517|consen 722 EVVVALSHFVVG 733 (1387)
T ss_pred HHHHHHHHHHHh
Confidence 666666666654
No 89
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.76 E-value=0.0066 Score=67.00 Aligned_cols=342 Identities=12% Similarity=0.153 Sum_probs=184.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHh
Q 047123 166 DIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFE 245 (579)
Q Consensus 166 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~ 245 (579)
.|+..+.+.|-+.|..|..-|..-...+......=.+...+..++++|+ +.+.++|..|+++|+-|+..-++.+-.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~-D~ngEVQnlAVKClg~lvsKvke~~le--- 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLE-DKNGEVQNLAVKCLGPLVSKVKEDQLE--- 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHhhchHHHHH---
Confidence 4555555666666666655554433222111111224556889999999 999999999999999998733333321
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHH-hcCCCccHHHHHhcCcHHHHHHHhcCC------CHHHHHHHHHHHHHhhc-
Q 047123 246 EGGLGPLLRILETGSMPLKEKAAIGVEA-ITTDPENAWAISAYGGVSVLIEAFRSG------TALTQSHAVGAIRNIAA- 317 (579)
Q Consensus 246 ~g~l~~Lv~lL~~~~~~v~~~aa~~L~~-Ls~~~~~~~~i~~~g~i~~Lv~ll~~~------~~~~~~~a~~aL~nLs~- 317 (579)
..+..|+.-+-++....+.-+...|.. ++.-++....+....+++.+...+... ...++..++..+.-+-.
T Consensus 85 -~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr 163 (1233)
T KOG1824|consen 85 -TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR 163 (1233)
T ss_pred -HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence 123344444444444333333333322 222333333344444555555544432 22355555555543322
Q ss_pred ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHH
Q 047123 318 VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAI 397 (579)
Q Consensus 318 ~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL 397 (579)
..+.-.. .+.+....++.-+.+....++.+++.+|+.++..-+. . .-.+.++.|++-|..... ......-..+|
T Consensus 164 ~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~--~--ly~~li~~Ll~~L~~~~q-~~~~rt~Iq~l 237 (1233)
T KOG1824|consen 164 FGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR--D--LYVELIEHLLKGLSNRTQ-MSATRTYIQCL 237 (1233)
T ss_pred hcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH--H--HHHHHHHHHHhccCCCCc-hHHHHHHHHHH
Confidence 1110000 2334455555566777778999999999999874322 1 112345555554444332 23444555666
Q ss_pred HHcccc-hhHHHHHhhcCcHHHHHHHHH---hcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhcc-------
Q 047123 398 SSLSLS-DSAARILSSTTSFIIQLGEFI---KRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLME------- 464 (579)
Q Consensus 398 ~~L~~~-~~~~~l~~~~~g~i~~L~~lL---~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~------- 464 (579)
..+|.. ..+ +-.+....++.+.++. +..+.+.++....++..+- ..|...-.+... +..+++.+.
T Consensus 238 ~~i~r~ag~r--~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~y 315 (1233)
T KOG1824|consen 238 AAICRQAGHR--FGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNY 315 (1233)
T ss_pred HHHHHHhcch--hhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCC
Confidence 666664 111 1111114677778887 7788899999998888776 444433333333 333333321
Q ss_pred ------------CCC--------------CHhHHHHHHHHHHHhhcCCcc-hhHHHhhcccHHHHHhhcCCCchhhhhHH
Q 047123 465 ------------CPK--------------PVGLQEAATDAVLSLLTVRSN-RKELVRDEKSVMRLMQMLDPKNEALNKKF 517 (579)
Q Consensus 465 ------------~~~--------------~~~v~~~a~~aL~~L~~~~~~-~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~ 517 (579)
+.+ +..||.+|+.++..+...... ...+.+ ..-+.++.-+.+++++ +|.-
T Consensus 316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q--~l~p~lI~RfkEREEn-Vk~d 392 (1233)
T KOG1824|consen 316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQ--TLGPALISRFKEREEN-VKAD 392 (1233)
T ss_pred CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHH--HhCHHHHHHHHHHhhh-HHHH
Confidence 111 346899999999998765433 333333 2225677777777776 4444
Q ss_pred HHHHHH
Q 047123 518 PVMVTA 523 (579)
Q Consensus 518 av~~L~ 523 (579)
.+.++.
T Consensus 393 vf~~yi 398 (1233)
T KOG1824|consen 393 VFHAYI 398 (1233)
T ss_pred HHHHHH
Confidence 443333
No 90
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.011 Score=60.21 Aligned_cols=263 Identities=13% Similarity=0.100 Sum_probs=171.1
Q ss_pred HHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh------h----hHHHHHHcCCHHHHHHHhc
Q 047123 270 GVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVE------D----IKAALAEEGAVPVLVQSLT 339 (579)
Q Consensus 270 ~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~------~----~~~~l~~~g~v~~Lv~lL~ 339 (579)
-+.-++..|+.-..+++.++++.|+++|.+++.++....+..|..|+..+ + .-..+++.++++.|++-+.
T Consensus 107 ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnve 186 (536)
T KOG2734|consen 107 EMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVE 186 (536)
T ss_pred HHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHH
Confidence 35567778888889999999999999999999999999999999987522 1 2455778899999998874
Q ss_pred CCC------HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHh
Q 047123 340 SSS------NLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILS 411 (579)
Q Consensus 340 ~~~------~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~ 411 (579)
.=+ ..-...+...+-|+....+.+...+++.|.+.-|+.-+....+-...+..|..+|.-+-.. +++..+..
T Consensus 187 RLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~ 266 (536)
T KOG2734|consen 187 RLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGP 266 (536)
T ss_pred HhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcC
Confidence 322 2345667888899998888888888888888877764544432236788888888877766 34444444
Q ss_pred hcCcHHHHHHHHH---hcCC---HHHHHHH---HHHHHHhcCChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHH
Q 047123 412 STTSFIIQLGEFI---KRGN---VLLQQVS---SSLLGNLSISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVL 480 (579)
Q Consensus 412 ~~~g~i~~L~~lL---~~~~---~~v~~~A---~~aL~~L~~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~ 480 (579)
- .++..++.-+ +..+ .+-++.. -..|+.+-..++++..|... +....=+++. ....+..+..+|-
T Consensus 267 l--~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~--Kk~sr~SalkvLd 342 (536)
T KOG2734|consen 267 L--DGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE--KKVSRGSALKVLD 342 (536)
T ss_pred c--ccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH--HHHhhhhHHHHHH
Confidence 4 5666555544 2222 2233444 44444444888999988877 4433334422 2455788889998
Q ss_pred HhhcCCc---chhHHHhhcccHHHHHhhcC-CCc--------hhhhhHHHHHHHHHHhCCCChhHHHHH
Q 047123 481 SLLTVRS---NRKELVRDEKSVMRLMQMLD-PKN--------EALNKKFPVMVTAAVLGGGSNGCRKRL 537 (579)
Q Consensus 481 ~L~~~~~---~~~~~~~~~~~i~~Lv~lL~-~~~--------~~~~k~~av~~L~~L~~~~~~~~r~~i 537 (579)
.....++ ++..++ +..|+..+..+-- .+. ....-+...++|+++..+-+..+|.++
T Consensus 343 ~am~g~~gt~~C~kfV-e~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~~~~~r~R~ 410 (536)
T KOG2734|consen 343 HAMFGPEGTPNCNKFV-EILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNLDGVHRQRL 410 (536)
T ss_pred HHHhCCCchHHHHHHH-HHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 8876544 566777 4667666554332 211 111334455566655543332255544
No 91
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.0093 Score=63.34 Aligned_cols=302 Identities=13% Similarity=0.116 Sum_probs=185.5
Q ss_pred cHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHH
Q 047123 205 NVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAI 284 (579)
Q Consensus 205 ~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i 284 (579)
.+..|..-++ .+++.+|+....+|..+.. ..++... .-..+-+.+++......-+..++..++.+..+ ..-..+
T Consensus 97 ~~~~~~~~~~-tps~~~q~~~~~~l~~~~~-~~~~~~~---~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g-~~i~~~ 170 (569)
T KOG1242|consen 97 IIEILLEELD-TPSKSVQRAVSTCLPPLVV-LSKGLSG---EYVLELLLELLTSTKIAERAGAAYGLAGLVNG-LGIESL 170 (569)
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHhhhHHH-HhhccCH---HHHHHHHHHHhccccHHHHhhhhHHHHHHHcC-cHHhhh
Confidence 4667777777 8889999998888887765 2222111 12466778888888888899999999988754 234456
Q ss_pred HhcCcHHHHHHHhcCCCHHHHHH-HHHHHHHhhcChhhHHHHHHcC---CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 047123 285 SAYGGVSVLIEAFRSGTALTQSH-AVGAIRNIAAVEDIKAALAEEG---AVPVLVQSLTSSSNLAQENAADCIATLAASG 360 (579)
Q Consensus 285 ~~~g~i~~Lv~ll~~~~~~~~~~-a~~aL~nLs~~~~~~~~l~~~g---~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~ 360 (579)
.+.+.+..|.....+........ +.-+.-..+.+-. ...+-. .+|.++..+.+....++..+..+...+...-
T Consensus 171 ~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~ 247 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCL 247 (569)
T ss_pred hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhc
Confidence 66778888888888765543332 2222211111100 111222 3444444556667788888887776654321
Q ss_pred hhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHH
Q 047123 361 EYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLL 439 (579)
Q Consensus 361 ~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL 439 (579)
+... + .-.++.++.-+..... ..+..++..+..++.+ +..-..... .+++.+.+.|.+.++++|..+..++
T Consensus 248 ~~~a---V-K~llpsll~~l~~~kW--rtK~aslellg~m~~~ap~qLs~~lp--~iiP~lsevl~DT~~evr~a~~~~l 319 (569)
T KOG1242|consen 248 SAYA---V-KLLLPSLLGSLLEAKW--RTKMASLELLGAMADCAPKQLSLCLP--DLIPVLSEVLWDTKPEVRKAGIETL 319 (569)
T ss_pred Ccch---h-hHhhhhhHHHHHHHhh--hhHHHHHHHHHHHHHhchHHHHHHHh--HhhHHHHHHHccCCHHHHHHHHHHH
Confidence 1100 0 1224444443333344 6788999999999888 555555555 7999999999999999999999999
Q ss_pred HHhc---CChhhHHHH---HHH--------------------------------HHHHHHhccCCCCHhHHHHHHHHHHH
Q 047123 440 GNLS---ISDGNKRAV---ASC--------------------------------MGSLIKLMECPKPVGLQEAATDAVLS 481 (579)
Q Consensus 440 ~~L~---~~~~~~~~i---~~~--------------------------------v~~Lv~lL~~~~~~~v~~~a~~aL~~ 481 (579)
.+++ .|++..+.+ .++ +|.|.+-+ ...+...+..++.+.+|
T Consensus 320 ~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l-~eRst~~kr~t~~IidN 398 (569)
T KOG1242|consen 320 LKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGL-AERSTSIKRKTAIIIDN 398 (569)
T ss_pred HHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHH-hhccchhhhhHHHHHHH
Confidence 9888 555543321 111 33344444 34466777888999999
Q ss_pred hhcCCcchhHHHhh-cccHHHHHhhcCCCchhhhhHHHHHHHHHH
Q 047123 482 LLTVRSNRKELVRD-EKSVMRLMQMLDPKNEALNKKFPVMVTAAV 525 (579)
Q Consensus 482 L~~~~~~~~~~~~~-~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L 525 (579)
++.--++.+.+..= ...++.|-..+.+..++ .|..+..+|..+
T Consensus 399 m~~LveDp~~lapfl~~Llp~lk~~~~d~~PE-vR~vaarAL~~l 442 (569)
T KOG1242|consen 399 MCKLVEDPKDLAPFLPSLLPGLKENLDDAVPE-VRAVAARALGAL 442 (569)
T ss_pred HHHhhcCHHHHhhhHHHHhhHHHHHhcCCChh-HHHHHHHHHHHH
Confidence 98755443332210 22334444455555555 666666666444
No 92
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.0022 Score=69.54 Aligned_cols=305 Identities=16% Similarity=0.117 Sum_probs=161.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH
Q 047123 161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR 240 (579)
Q Consensus 161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~ 240 (579)
.-+..++...++++++.+|..|+.+...+-..+ ...+...|+++.|..++. +.++.+..+|+.+|..+...+++..
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~-D~~p~VVAnAlaaL~eI~e~~~~~~ 195 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLS-DSNPMVVANALAALSEIHESHPSVN 195 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhc-CCCchHHHHHHHHHHHHHHhCCCCC
Confidence 346789999999999999999999998885443 455678999999999999 9999999999999999988444311
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc--HHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 047123 241 KIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPEN--AWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV 318 (579)
Q Consensus 241 ~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~ 318 (579)
...+..-.+..++..+..-+ ...-+.+|..++.+-.. ..+ ...+..+...+++.++.++-.+..++.++...
T Consensus 196 ~~~l~~~~~~~lL~al~ec~---EW~qi~IL~~l~~y~p~d~~ea---~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~ 269 (734)
T KOG1061|consen 196 LLELNPQLINKLLEALNECT---EWGQIFILDCLAEYVPKDSREA---EDICERLTPRLQHANSAVVLSAVKVILQLVKY 269 (734)
T ss_pred cccccHHHHHHHHHHHHHhh---hhhHHHHHHHHHhcCCCCchhH---HHHHHHhhhhhccCCcceEeehHHHHHHHHHH
Confidence 11111112333333333322 23333344444422111 111 12456666677777776777777777666553
Q ss_pred hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh-hH------------------------HHHHhcCcH
Q 047123 319 EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEY-FR------------------------LLIIQERGL 373 (579)
Q Consensus 319 ~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~-~r------------------------~~l~~~g~i 373 (579)
............-++++.++.+.. .++..++.=+.-+-...+. .+ ..+.....+
T Consensus 270 ~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl 348 (734)
T KOG1061|consen 270 LKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANL 348 (734)
T ss_pred HHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHH
Confidence 222223333345556666665554 4444333222222111111 00 000000011
Q ss_pred -HHHHHhhccCC-CChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhH
Q 047123 374 -QRLMHLIQDST-SSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNK 449 (579)
Q Consensus 374 -~~Lv~ll~~~~-~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~ 449 (579)
+.+-++..... -+.+....+++++.+++.. +.. . +.+..|+++++..-.-+.+.+...++.+- ..|..-
T Consensus 349 ~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~--~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~ 421 (734)
T KOG1061|consen 349 AQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----N--DCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY 421 (734)
T ss_pred HHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----h--hhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch
Confidence 11111221111 1134555566666666554 111 2 56666777776555545555555566555 344332
Q ss_pred HHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCC
Q 047123 450 RAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVR 486 (579)
Q Consensus 450 ~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~ 486 (579)
+.+ +..+..-++.-++++.+.+-.+.++.-+..-
T Consensus 422 ~~v---v~~l~~~~~sl~epeak~amiWilg~y~~~i 455 (734)
T KOG1061|consen 422 ESV---VAILCENLDSLQEPEAKAALIWILGEYAERI 455 (734)
T ss_pred hhh---hhhhcccccccCChHHHHHHHHHHhhhhhcc
Confidence 211 4444444433345666666666666655443
No 93
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.024 Score=61.69 Aligned_cols=284 Identities=11% Similarity=0.129 Sum_probs=174.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHH
Q 047123 165 RDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVF 244 (579)
Q Consensus 165 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~ 244 (579)
.+|..+|.+.....+.+|+.-|..+...+.+. ....|..|+... +.+.+++.-.--.|...+. ....-..+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVa-skn~EVKkLVyvYLlrYAE-eqpdLALL- 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVA-SKNIEVKKLVYVYLLRYAE-EQPDLALL- 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhh-ccCHHHHHHHHHHHHHHhh-cCCCceee-
Confidence 57899999999899999988888776544432 234677888887 8889998887767777776 22222111
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChhhHH
Q 047123 245 EEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VEDIKA 323 (579)
Q Consensus 245 ~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~~~~ 323 (579)
-|..+-+.|+++++.+|..|.++|..+-.. +...=.+-++-+...+..+.++..|+-++-.|=. .++.+.
T Consensus 109 ---SIntfQk~L~DpN~LiRasALRvlSsIRvp------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 109 ---SINTFQKALKDPNQLIRASALRVLSSIRVP------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred ---eHHHHHhhhcCCcHHHHHHHHHHHHhcchh------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH
Confidence 377888999999999999998888876431 1100011222234456778999999999988855 555555
Q ss_pred HHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc
Q 047123 324 ALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS 403 (579)
Q Consensus 324 ~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~ 403 (579)
++. +.+-.+|.+.++.|.-.|+.+.-.+|-..- .++ .+-...+.+++..-+. ..|......|..-|..
T Consensus 180 qL~-----e~I~~LLaD~splVvgsAv~AF~evCPerl----dLI-HknyrklC~ll~dvde--WgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 180 QLE-----EVIKKLLADRSPLVVGSAVMAFEEVCPERL----DLI-HKNYRKLCRLLPDVDE--WGQVVLINMLTRYARH 247 (968)
T ss_pred HHH-----HHHHHHhcCCCCcchhHHHHHHHHhchhHH----HHh-hHHHHHHHhhccchhh--hhHHHHHHHHHHHHHh
Confidence 443 445557888888888888888887775321 111 1223334444333322 2333333333332222
Q ss_pred ----hhH-HHHHhh--------------------cCc---HHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH
Q 047123 404 ----DSA-ARILSS--------------------TTS---FIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASC 455 (579)
Q Consensus 404 ----~~~-~~l~~~--------------------~~g---~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~ 455 (579)
+.. ....+. +++ .+...--+|.+.++.|...++.+.+.++-..++...
T Consensus 248 ~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i---- 323 (968)
T KOG1060|consen 248 QLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKI---- 323 (968)
T ss_pred cCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHH----
Confidence 100 000000 001 233344557788899999999999999833232222
Q ss_pred HHHHHHhccCCCCHhHHHHHHHHHHHhhc
Q 047123 456 MGSLIKLMECPKPVGLQEAATDAVLSLLT 484 (579)
Q Consensus 456 v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~ 484 (579)
++.|+++| .+ +.++|+...+.+..++.
T Consensus 324 ~kaLvrLL-rs-~~~vqyvvL~nIa~~s~ 350 (968)
T KOG1060|consen 324 AKALVRLL-RS-NREVQYVVLQNIATISI 350 (968)
T ss_pred HHHHHHHH-hc-CCcchhhhHHHHHHHHh
Confidence 67888888 33 45677777666666654
No 94
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.71 E-value=0.00017 Score=58.10 Aligned_cols=86 Identities=22% Similarity=0.266 Sum_probs=71.5
Q ss_pred HHHHHHHh-ccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 164 IRDIFTRL-QIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 164 v~~Lv~~L-~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
|+.|+..| ++.++.+|..|+.+|+.+. ....++.|+.+++ ++++.+|..|+.+|+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~i~~-------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLK-DEDPMVRRAAARALGRIGD-------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHT-SSSHHHHHHHHHHHHCCHH--------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHc-CCCHHHHHHHHHHHHHhCC--------
Confidence 57889989 8889999999999998553 1245999999999 9999999999999998865
Q ss_pred HHhcCCHHHHHHHHccC-CHHHHHHHHHHHH
Q 047123 243 VFEEGGLGPLLRILETG-SMPLKEKAAIGVE 272 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~-~~~v~~~aa~~L~ 272 (579)
..+++.|.+.+.++ +..++..|+.+|+
T Consensus 61 ---~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ---PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 45899999999885 5667888888774
No 95
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.71 E-value=0.0034 Score=66.80 Aligned_cols=260 Identities=15% Similarity=0.114 Sum_probs=165.5
Q ss_pred HHHHHHHhccChhhHHHHHhhCcHHHHHHhh---------ccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHH
Q 047123 183 LESLLQLLKDDDKSAAVVAKEGNVGYLISLL---------DFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLL 253 (579)
Q Consensus 183 l~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL---------~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv 253 (579)
+.+|+-+.+ ++.+...+....++..|.++- ....+..+...|+++|+|+-..++..|..+++.|+.+.++
T Consensus 2 L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 344544443 455666666666677777765 2245689999999999999997899999999999999999
Q ss_pred HHHccC-----CHHHHHHHHHHHHHhcC-CCccHHHHHh-cCcHHHHHHHhcC---------C--------CHHHHHHHH
Q 047123 254 RILETG-----SMPLKEKAAIGVEAITT-DPENAWAISA-YGGVSVLIEAFRS---------G--------TALTQSHAV 309 (579)
Q Consensus 254 ~lL~~~-----~~~v~~~aa~~L~~Ls~-~~~~~~~i~~-~g~i~~Lv~ll~~---------~--------~~~~~~~a~ 309 (579)
..|+.. +.++.-...++|.-++. .++.+..+.+ ++++..+...+.. . +......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999987 78899999999988884 5566656655 5788877776541 0 224566677
Q ss_pred HHHHHhhcChhhHHHHHHcCCHHHHHHHhc---------CCCHHHHHHHHHHHHHHhcCChhh-------HH----HHHh
Q 047123 310 GAIRNIAAVEDIKAALAEEGAVPVLVQSLT---------SSSNLAQENAADCIATLAASGEYF-------RL----LIIQ 369 (579)
Q Consensus 310 ~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~---------~~~~~v~~~a~~~L~~La~~~~~~-------r~----~l~~ 369 (579)
..++|+..+......-.+...++.++.++. ........+++.+|.|+-...... .. ....
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 888999763322211112233444443321 123467888899998884321110 00 0011
Q ss_pred cCcHHHHHHhhccC----CC--ChHHHHHHHHHHHHcccc-hhHHHHHhh---------------cCcHHHHHHHHHhcC
Q 047123 370 ERGLQRLMHLIQDS----TS--SIVTVENALLAISSLSLS-DSAARILSS---------------TTSFIIQLGEFIKRG 427 (579)
Q Consensus 370 ~g~i~~Lv~ll~~~----~~--~~~~~~~A~~aL~~L~~~-~~~~~l~~~---------------~~g~i~~L~~lL~~~ 427 (579)
...+..|+.+|+.. .. -++.....+.+|.+++.. ...+..+.. +...-.+|+.++.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 23466777766532 11 013445556677777765 322222222 334555788888887
Q ss_pred CHHHHHHHHHHHHHhc
Q 047123 428 NVLLQQVSSSLLGNLS 443 (579)
Q Consensus 428 ~~~v~~~A~~aL~~L~ 443 (579)
.+.++..++..++.||
T Consensus 321 ~~~~k~~vaellf~Lc 336 (446)
T PF10165_consen 321 DPQLKDAVAELLFVLC 336 (446)
T ss_pred CchHHHHHHHHHHHHH
Confidence 7888888888888887
No 96
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.013 Score=59.55 Aligned_cols=240 Identities=12% Similarity=0.121 Sum_probs=175.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccC-----h----hhHHHHHhhCcHHHHHHhhcc--CC---CHHHHHHHHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDD-----D----KSAAVVAKEGNVGYLISLLDF--HH---QSSIREQAVLA 228 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-----~----~~~~~i~~~g~v~~Lv~LL~~--~~---~~~~~~~A~~a 228 (579)
.|+.++.+|.+.+.++-...+.-|.++...+ . .-...+++.+.++.|++-+++ .. .......++..
T Consensus 126 ~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~v 205 (536)
T KOG2734|consen 126 AVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAV 205 (536)
T ss_pred cHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHH
Confidence 5899999999999999999999999886432 2 234556788899999986641 11 13455567888
Q ss_pred HHHhhccChhhHHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhc---CC--
Q 047123 229 LSIIVSANDESRKIVFEEGGLGPLLRILETG--SMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFR---SG-- 300 (579)
Q Consensus 229 L~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~---~~-- 300 (579)
+.|+..-.++....+++.|.+.-|+.-+... -...+..|..+|.-+-. +.+++..+...+|+..++.-+. ..
T Consensus 206 veNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP 285 (536)
T KOG2734|consen 206 VENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDP 285 (536)
T ss_pred HHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCC
Confidence 8888876788888999889888888755443 23346777888887775 4458889999999999988654 12
Q ss_pred ----CHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh--hhHHHHHhcCcHH
Q 047123 301 ----TALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGE--YFRLLIIQERGLQ 374 (579)
Q Consensus 301 ----~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~--~~r~~l~~~g~i~ 374 (579)
..+..++-..+|+.+-..++++..+....++..+.-+++. ....+..++.+|-....+++ .++..+++.+|+.
T Consensus 286 ~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLr 364 (536)
T KOG2734|consen 286 ATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLR 364 (536)
T ss_pred CCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHH
Confidence 2367888899999999999999999988888876555654 33567778888888877665 5677888888888
Q ss_pred HHHHhhc-cCC-------CChHHHHHHHHHHHHcccc
Q 047123 375 RLMHLIQ-DST-------SSIVTVENALLAISSLSLS 403 (579)
Q Consensus 375 ~Lv~ll~-~~~-------~~~~~~~~A~~aL~~L~~~ 403 (579)
.+..++. ... ..+..-++.+..||.+-.+
T Consensus 365 tiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 365 TIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred HHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 7777554 111 1245667777777766554
No 97
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.031 Score=60.09 Aligned_cols=279 Identities=19% Similarity=0.230 Sum_probs=174.5
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCC--HHHHHHHHHHHHHhcC-CCccHHHHH
Q 047123 209 LISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGS--MPLKEKAAIGVEAITT-DPENAWAIS 285 (579)
Q Consensus 209 Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~--~~v~~~aa~~L~~Ls~-~~~~~~~i~ 285 (579)
+.+=|. +.++..+.-|+.+++|++. - +.++.+ -+-+-++|-+++ .-++..|+-+|-.|-. +|+ .+-
T Consensus 116 iknDL~-srn~~fv~LAL~~I~niG~-r-e~~ea~-----~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~ 184 (938)
T KOG1077|consen 116 IKNDLS-SRNPTFVCLALHCIANIGS-R-EMAEAF-----ADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVN 184 (938)
T ss_pred HHhhhh-cCCcHHHHHHHHHHHhhcc-H-hHHHHh-----hhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccC
Confidence 334344 6778888899999999987 2 222222 233337777763 5578888888877764 332 111
Q ss_pred hcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-Chh-hHHHHHHcCCHHHHHHHh-------------cCCCHHHHHHHH
Q 047123 286 AYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VED-IKAALAEEGAVPVLVQSL-------------TSSSNLAQENAA 350 (579)
Q Consensus 286 ~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~-~~~~l~~~g~v~~Lv~lL-------------~~~~~~v~~~a~ 350 (579)
..+-..+++.+|.+.+-.+...+...+-.++. +++ .+..+.. +|..|.... .-..|-++.+.+
T Consensus 185 ~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~--avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~ 262 (938)
T KOG1077|consen 185 PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL--AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLL 262 (938)
T ss_pred hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH--HHHHHHHHHhhcccchhhceeecCCChHHHHHHH
Confidence 22456788888888877777777777766665 222 2221110 111221111 113567888899
Q ss_pred HHHHHHhc-CChhhHHHHHhcCcHHHHHHhhccCCC-ChHHHHHHH----HHHHHcccc-hhHHHHHhhcCcHHHHHHHH
Q 047123 351 DCIATLAA-SGEYFRLLIIQERGLQRLMHLIQDSTS-SIVTVENAL----LAISSLSLS-DSAARILSSTTSFIIQLGEF 423 (579)
Q Consensus 351 ~~L~~La~-~~~~~r~~l~~~g~i~~Lv~ll~~~~~-~~~~~~~A~----~aL~~L~~~-~~~~~l~~~~~g~i~~L~~l 423 (579)
+.|.+.-. .|+..|..+ ..+++.++...+.... +.-...+|. .-.-+|+.. +.-..++.. ++..|-.+
T Consensus 263 rlLq~~p~~~D~~~r~~l--~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~---~~~~Lg~f 337 (938)
T KOG1077|consen 263 RLLQIYPTPEDPSTRARL--NEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR---AVNQLGQF 337 (938)
T ss_pred HHHHhCCCCCCchHHHHH--HHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH---HHHHHHHH
Confidence 99988853 233334333 2234444444432211 111222222 223355555 555556654 88899999
Q ss_pred HhcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHH
Q 047123 424 IKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLM 503 (579)
Q Consensus 424 L~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv 503 (579)
|.+....+|.-|...++.|+.+....+++....+.++..|+..++..+|..|+..|+.++. .+|.+.++ ..++
T Consensus 338 ls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD-~~Nak~IV------~elL 410 (938)
T KOG1077|consen 338 LSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD-VSNAKQIV------AELL 410 (938)
T ss_pred hhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc-hhhHHHHH------HHHH
Confidence 9999999999999999999977766777777788899999668899999999999999775 45666655 4577
Q ss_pred hhcCCCchh
Q 047123 504 QMLDPKNEA 512 (579)
Q Consensus 504 ~lL~~~~~~ 512 (579)
+.|.+.+..
T Consensus 411 qYL~tAd~s 419 (938)
T KOG1077|consen 411 QYLETADYS 419 (938)
T ss_pred HHHhhcchH
Confidence 777765544
No 98
>PF05536 Neurochondrin: Neurochondrin
Probab=97.66 E-value=0.01 Score=64.68 Aligned_cols=233 Identities=15% Similarity=0.118 Sum_probs=158.6
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc----cHHHHHhcCcHHHHHHHhcC-------CCHHHHHHHHHHHHHhh
Q 047123 248 GLGPLLRILETGSMPLKEKAAIGVEAITTDPE----NAWAISAYGGVSVLIEAFRS-------GTALTQSHAVGAIRNIA 316 (579)
Q Consensus 248 ~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~----~~~~i~~~g~i~~Lv~ll~~-------~~~~~~~~a~~aL~nLs 316 (579)
.+...+++|+..+.+-+-.+...+.++....+ .+..+.+.=|.+-|-.+|+. +....+..++.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 36677888888886666666677778875433 24457776667888888887 23467888999999999
Q ss_pred cChhhHHHHHHcCCHHHHHHHhcCCCH-HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHH
Q 047123 317 AVEDIKAALAEEGAVPVLVQSLTSSSN-LAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALL 395 (579)
Q Consensus 317 ~~~~~~~~l~~~g~v~~Lv~lL~~~~~-~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~ 395 (579)
..|+....---.+.||.+++.+.+.+. .+...+..+|..++.. +..+..+.+.|+++.|.+.+.++. ...+.|..
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~~~---~~~E~Al~ 161 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPNQS---FQMEIALN 161 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHhCc---chHHHHHH
Confidence 977764322222479999999977766 9999999999999954 467999999999999999988843 67999999
Q ss_pred HHHHcccchhHHHHHhhcC---cHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhh---HH----HHHHH-HHHHHHhcc
Q 047123 396 AISSLSLSDSAARILSSTT---SFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGN---KR----AVASC-MGSLIKLME 464 (579)
Q Consensus 396 aL~~L~~~~~~~~l~~~~~---g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~---~~----~i~~~-v~~Lv~lL~ 464 (579)
++.+++........-+... ..+..+...+...+...+...+..|..+-...+. +. .-... ...+..+++
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~ 241 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ 241 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence 9999987622111111100 2455566666666667777777777777622211 11 11111 455556774
Q ss_pred CCCCHhHHHHHHHHHHHhhc
Q 047123 465 CPKPVGLQEAATDAVLSLLT 484 (579)
Q Consensus 465 ~~~~~~v~~~a~~aL~~L~~ 484 (579)
....+.-|..+.....+|..
T Consensus 242 sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 242 SRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 44456677777777776654
No 99
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.0064 Score=66.05 Aligned_cols=252 Identities=18% Similarity=0.186 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh
Q 047123 160 LVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDES 239 (579)
Q Consensus 160 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~ 239 (579)
+-...++.+...++.|.+.+.-.---+.+.+...|... .++++.+++=.. ++++.+|-.|++.++.+.. . ..
T Consensus 47 vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~-d~np~iR~lAlrtm~~l~v-~-~i 118 (734)
T KOG1061|consen 47 VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCE-DPNPLIRALALRTMGCLRV-D-KI 118 (734)
T ss_pred hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCC-CCCHHHHHHHhhceeeEee-h-HH
Confidence 34467899999999999999888888888887776542 345666666556 7789999998887776655 1 11
Q ss_pred HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh
Q 047123 240 RKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVE 319 (579)
Q Consensus 240 ~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~ 319 (579)
. +-.+.|+.+.+++.++.++..++.++.++-. .+.......|.+..|-.++.+.++.+..+|+.+|..+...+
T Consensus 119 ~-----ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 119 T-----EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred H-----HHHHHHHHHhccCCChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 1 2347899999999999999999998888864 44566677899999999999999999999999999886633
Q ss_pred hh-HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123 320 DI-KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAIS 398 (579)
Q Consensus 320 ~~-~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~ 398 (579)
.+ .........+..++..+..-++--+...+.++.+-...++ ++. ...++.+...+...++ .+...+...+.
T Consensus 192 ~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~--~ea---~~i~~r~~p~Lqh~n~--avvlsavKv~l 264 (734)
T KOG1061|consen 192 PSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS--REA---EDICERLTPRLQHANS--AVVLSAVKVIL 264 (734)
T ss_pred CCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc--hhH---HHHHHHhhhhhccCCc--ceEeehHHHHH
Confidence 21 0000011122223333332233333333333333222221 111 1233444444555444 45556666666
Q ss_pred Hcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHH
Q 047123 399 SLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSS 436 (579)
Q Consensus 399 ~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~ 436 (579)
++... ......+.. ...+.|+.++.... +.+..+.
T Consensus 265 ~~~~~~~~~~~~~~~--K~~~pl~tlls~~~-e~qyvaL 300 (734)
T KOG1061|consen 265 QLVKYLKQVNELLFK--KVAPPLVTLLSSES-EIQYVAL 300 (734)
T ss_pred HHHHHHHHHHHHHHH--Hhcccceeeecccc-hhhHHHH
Confidence 66555 222222222 34445555555554 5554443
No 100
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.64 E-value=0.0065 Score=64.65 Aligned_cols=263 Identities=16% Similarity=0.163 Sum_probs=176.9
Q ss_pred HHHHHHhhccChhhHHHHHhcCCHHHHHHHH----------ccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHH
Q 047123 226 VLALSIIVSANDESRKIVFEEGGLGPLLRIL----------ETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLI 294 (579)
Q Consensus 226 ~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL----------~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv 294 (579)
+.+|..+++ ++.+.+.+....++..|+++- ...+..+...|.++|+|+.. ++..+..+.+.|+.+.++
T Consensus 2 L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 556777788 777777777777777777776 22478899999999999985 667888899999999999
Q ss_pred HHhcCC-----CHHHHHHHHHHHHHhhc-ChhhHHHHHH-cCCHHHHHHHhcC-----------------CCHHHHHHHH
Q 047123 295 EAFRSG-----TALTQSHAVGAIRNIAA-VEDIKAALAE-EGAVPVLVQSLTS-----------------SSNLAQENAA 350 (579)
Q Consensus 295 ~ll~~~-----~~~~~~~a~~aL~nLs~-~~~~~~~l~~-~g~v~~Lv~lL~~-----------------~~~~v~~~a~ 350 (579)
+.++.. +.++.....+.|+-++. ..+.+..+++ .+++..++..+.. .+......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999876 67888888888888876 6667777774 4778777766521 1335677788
Q ss_pred HHHHHHhcCChhhHHHHHhcCcHHHHHHhhcc-------CCCChHHHHHHHHHHHHcccchhHHHHH------------h
Q 047123 351 DCIATLAASGEYFRLLIIQERGLQRLMHLIQD-------STSSIVTVENALLAISSLSLSDSAARIL------------S 411 (579)
Q Consensus 351 ~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~-------~~~~~~~~~~A~~aL~~L~~~~~~~~l~------------~ 411 (579)
..+.|+....+.... -.....++.++.++.. ..+......+++.+|.|+-.. ....++ .
T Consensus 161 KllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~-~~~~l~~~~~~~~~~~~~~ 238 (446)
T PF10165_consen 161 KLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLE-CLDSLLSPKFQQSSLFPEG 238 (446)
T ss_pred HHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChH-HHhhhhcccCCcccccCCC
Confidence 888998765433211 0123344444444322 222346788888888888432 111110 0
Q ss_pred hcCcHHHHHHHHHhc----CC----HHHHHHHHHHHHHhc-CChhhHHHHHHH------------------HHHHHHhcc
Q 047123 412 STTSFIIQLGEFIKR----GN----VLLQQVSSSLLGNLS-ISDGNKRAVASC------------------MGSLIKLME 464 (579)
Q Consensus 412 ~~~g~i~~L~~lL~~----~~----~~v~~~A~~aL~~L~-~~~~~~~~i~~~------------------v~~Lv~lL~ 464 (579)
.....+..|+.+|.. .. .+.-.--..+|.+++ .+...|+++... -..|++++
T Consensus 239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLm- 317 (446)
T PF10165_consen 239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLM- 317 (446)
T ss_pred CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHh-
Confidence 112456677777642 11 123344567788888 567788888775 56788888
Q ss_pred CCCCHhHHHHHHHHHHHhhcCCcchhHHHh
Q 047123 465 CPKPVGLQEAATDAVLSLLTVRSNRKELVR 494 (579)
Q Consensus 465 ~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~ 494 (579)
.+....++..+++.|+.|+. ++..++++
T Consensus 318 t~~~~~~k~~vaellf~Lc~--~d~~~~v~ 345 (446)
T PF10165_consen 318 TSPDPQLKDAVAELLFVLCK--EDASRFVK 345 (446)
T ss_pred CCCCchHHHHHHHHHHHHHh--hhHHHHHH
Confidence 55559999999999999974 34445553
No 101
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.64 E-value=0.00024 Score=57.26 Aligned_cols=88 Identities=23% Similarity=0.304 Sum_probs=69.3
Q ss_pred HHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHH
Q 047123 373 LQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAV 452 (579)
Q Consensus 373 i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i 452 (579)
++.|++.+..+.+ +.++..++.+|..+... .+++.|..++++.++.++..|+.+|..+...
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~------- 61 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGDP-----------EAIPALIELLKDEDPMVRRAAARALGRIGDP------- 61 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTHH-----------HHHHHHHHHHTSSSHHHHHHHHHHHHCCHHH-------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCCH-----------hHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-------
Confidence 5778888844332 48999999999966433 5789999999999999999999999988411
Q ss_pred HHHHHHHHHhccCCCCHhHHHHHHHHHH
Q 047123 453 ASCMGSLIKLMECPKPVGLQEAATDAVL 480 (579)
Q Consensus 453 ~~~v~~Lv~lL~~~~~~~v~~~a~~aL~ 480 (579)
+.++.|.+++.++++..+|..|..+|+
T Consensus 62 -~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 -EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 128899999966667788999999885
No 102
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.62 E-value=0.018 Score=60.36 Aligned_cols=300 Identities=9% Similarity=0.033 Sum_probs=175.5
Q ss_pred HHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCC-HHHHHHHHHHHHHhhccChhhHHHHHhcC
Q 047123 169 TRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQ-SSIREQAVLALSIIVSANDESRKIVFEEG 247 (579)
Q Consensus 169 ~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~-~~~~~~A~~aL~~La~~~~~~~~~i~~~g 247 (579)
+.|.+..+..-..|...++.++.-.-.+- .=.|....++.... .+. ..+...++.++++++. ...-...+...+
T Consensus 101 ~aL~s~epr~~~~Aaql~aaIA~~Elp~~---~wp~lm~~mv~nvg-~eqp~~~k~~sl~~~gy~ce-s~~Pe~li~~sN 175 (858)
T COG5215 101 RALKSPEPRFCTMAAQLLAAIARMELPNS---LWPGLMEEMVRNVG-DEQPVSGKCESLGICGYHCE-SEAPEDLIQMSN 175 (858)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHhhCccc---cchHHHHHHHHhcc-ccCchHhHHHHHHHHHHHhh-ccCHHHHHHHhh
Confidence 45566666666677777766654221100 01233333444333 333 5677788999999998 544433333333
Q ss_pred --CHHHHHHHHccC-CHHHHHHHHHHHHH-hcCCCccHHHHHhcC----cHHHHHHHhcCCCHHHHHHHHHHHHHhhc-C
Q 047123 248 --GLGPLLRILETG-SMPLKEKAAIGVEA-ITTDPENAWAISAYG----GVSVLIEAFRSGTALTQSHAVGAIRNIAA-V 318 (579)
Q Consensus 248 --~l~~Lv~lL~~~-~~~v~~~aa~~L~~-Ls~~~~~~~~i~~~g----~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~ 318 (579)
.+......++.+ +..+|-.+..+|.+ +-.- +..+...+ .+...++.-+.++.++|..+.+||..+.. +
T Consensus 176 ~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv---~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~Ly 252 (858)
T COG5215 176 VILFAIVMGALKNETTSAVRLAALKALMDSLMFV---QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLY 252 (858)
T ss_pred HHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH---HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHH
Confidence 222333344444 56788888888887 3321 11121111 34566677778899999999999988865 2
Q ss_pred hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH----------------hcCcHHHHHHhhcc
Q 047123 319 EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLII----------------QERGLQRLMHLIQD 382 (579)
Q Consensus 319 ~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~----------------~~g~i~~Lv~ll~~ 382 (579)
-..-....+.-......+.+++.++.+...+++.-..+|...-+.--.+. -..++|.|+++|..
T Consensus 253 Y~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~ 332 (858)
T COG5215 253 YKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEK 332 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHh
Confidence 22222333433444556667889999999998887666643211111111 12367899999876
Q ss_pred CCC----Ch-HHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHH----HhcCCHHHHHHHHHHHHHhc--CChhhHHH
Q 047123 383 STS----SI-VTVENALLAISSLSLSDSAARILSSTTSFIIQLGEF----IKRGNVLLQQVSSSLLGNLS--ISDGNKRA 451 (579)
Q Consensus 383 ~~~----~~-~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~l----L~~~~~~v~~~A~~aL~~L~--~~~~~~~~ 451 (579)
..+ ++ .....|..+|.-.+.. ... ..+..++.+ +++.+-.-++.|+++++.+- .+...+..
T Consensus 333 q~ed~~~DdWn~smaA~sCLqlfaq~-~gd-------~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~ 404 (858)
T COG5215 333 QGEDYYGDDWNPSMAASSCLQLFAQL-KGD-------KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTK 404 (858)
T ss_pred cCCCccccccchhhhHHHHHHHHHHH-hhh-------HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHh
Confidence 332 11 2233333444333322 111 222233333 45677778899999999998 44456666
Q ss_pred HHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123 452 VASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTV 485 (579)
Q Consensus 452 i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~ 485 (579)
+... +|.+..+. .+...-++..++++++.++..
T Consensus 405 ~V~qalp~i~n~m-~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 405 IVPQALPGIENEM-SDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred hHHhhhHHHHHhc-ccceeehhhHHHHHHHHHHHH
Confidence 6666 99999988 566677888999999988743
No 103
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.0021 Score=68.18 Aligned_cols=296 Identities=16% Similarity=0.173 Sum_probs=186.3
Q ss_pred HHHHH-HHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccCh---
Q 047123 162 LFIRD-IFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAND--- 237 (579)
Q Consensus 162 ~~v~~-Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~--- 237 (579)
..++. ++.+...+|..+|..|+..|..+.....- ..-.....++++. +.+.++|..|++.+...+.-.+
T Consensus 197 ~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL------~~~~Y~~A~~~ls-D~~e~VR~aAvqlv~v~gn~~p~~~ 269 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKL------SKACYSRAVKHLS-DDYEDVRKAAVQLVSVWGNRCPAPL 269 (823)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccc------cHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHhcCCCcc
Confidence 34555 88888899999999999999888653221 1223677888998 8889999999888776654221
Q ss_pred ---hhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 047123 238 ---ESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIR 313 (579)
Q Consensus 238 ---~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~ 313 (579)
.....+. ..++..+++.+.+.+..++..|+.+|+.+..- .+.-....+ +.++.-++..- ...+.......
T Consensus 270 e~e~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLd----KKlms~lRRkr-~ahkrpk~l~s 343 (823)
T KOG2259|consen 270 ERESEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLD----KKLMSRLRRKR-TAHKRPKALYS 343 (823)
T ss_pred cchhhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHH----HHHhhhhhhhh-hcccchHHHHh
Confidence 1122222 24578889999999999999999988887642 221111111 11111111000 00011111111
Q ss_pred Hh---------hc-----ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHh
Q 047123 314 NI---------AA-----VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHL 379 (579)
Q Consensus 314 nL---------s~-----~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~l 379 (579)
+- +. .++....++..|+--.++.-+.++-.+|+..|+..++.|+...+.+. ...+..|+.+
T Consensus 344 ~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA-----~~aldfLvDM 418 (823)
T KOG2259|consen 344 SGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA-----VRALDFLVDM 418 (823)
T ss_pred cCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHH
Confidence 11 00 12224457788888888888888888999999999999998776643 3357888999
Q ss_pred hccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 047123 380 IQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSL 459 (579)
Q Consensus 380 l~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~L 459 (579)
+.+... .++..|..+|..++.. ..+.. .-++.++..|...+.++++..-..|++.-.++. +.+.-++..|
T Consensus 419 fNDE~~--~VRL~ai~aL~~Is~~----l~i~e--eql~~il~~L~D~s~dvRe~l~elL~~~~~~d~--~~i~m~v~~l 488 (823)
T KOG2259|consen 419 FNDEIE--VVRLKAIFALTMISVH----LAIRE--EQLRQILESLEDRSVDVREALRELLKNARVSDL--ECIDMCVAHL 488 (823)
T ss_pred hccHHH--HHHHHHHHHHHHHHHH----heecH--HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcH--HHHHHHHHHH
Confidence 888776 8999999999998876 11122 466778888888999999988888777653222 1222224455
Q ss_pred HHhccCCCCHhHHHHHHHHHHHhhcCCc
Q 047123 460 IKLMECPKPVGLQEAATDAVLSLLTVRS 487 (579)
Q Consensus 460 v~lL~~~~~~~v~~~a~~aL~~L~~~~~ 487 (579)
++-|+ +.+.-+.....++..+...+.
T Consensus 489 L~~L~--kyPqDrd~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 489 LKNLG--KYPQDRDEILRCMGRIGQNHR 514 (823)
T ss_pred HHHhh--hCCCCcHHHHHHHHHHhccCh
Confidence 55451 223334445556666655443
No 104
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.024 Score=65.89 Aligned_cols=358 Identities=16% Similarity=0.166 Sum_probs=193.2
Q ss_pred chhHHHHHHHHHHHHhcc--CCH-HHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHh
Q 047123 156 HKQDLVLFIRDIFTRLQI--GGV-EFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSII 232 (579)
Q Consensus 156 ~~~~~~~~v~~Lv~~L~~--~~~-~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~L 232 (579)
+.+.++.+.+.||.+|-. =|| .....|+..|.+..-.+.+....-.-......|+.-|. +....+||.++-+|..|
T Consensus 988 a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt-~kewRVReasclAL~dL 1066 (1702)
T KOG0915|consen 988 AGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLT-SKEWRVREASCLALADL 1066 (1702)
T ss_pred HHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHH
Confidence 455666777777777742 122 33457888888877655443322222334455555555 67789999999999988
Q ss_pred hccC--hhhHHHHHhcCCHHHHHHHHccCCHHHHH---HHHHHHHHhcC---CCcc--HHHHHhcCcHHHHHH--HhcCC
Q 047123 233 VSAN--DESRKIVFEEGGLGPLLRILETGSMPLKE---KAAIGVEAITT---DPEN--AWAISAYGGVSVLIE--AFRSG 300 (579)
Q Consensus 233 a~~~--~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~---~aa~~L~~Ls~---~~~~--~~~i~~~g~i~~Lv~--ll~~~ 300 (579)
-... ++..+.+- ..-..+++.+++-...+|+ .++.+|.+|+. +..+ +..=.-..++|.|++ .+ +.
T Consensus 1067 l~g~~~~~~~e~lp--elw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~ 1143 (1702)
T KOG0915|consen 1067 LQGRPFDQVKEKLP--ELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SK 1143 (1702)
T ss_pred HcCCChHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cc
Confidence 7632 22333332 3456677777776555665 55666777662 2211 111111234455553 22 55
Q ss_pred CHHHHHHHHHHHHHhhcChhh--HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHH
Q 047123 301 TALTQSHAVGAIRNIAAVEDI--KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMH 378 (579)
Q Consensus 301 ~~~~~~~a~~aL~nLs~~~~~--~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ 378 (579)
-.+++..++.++..|+.+... +..+. ..||.|+..++.-.+.+..+...-+.|.. ...++.+-.
T Consensus 1144 v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYls~r~~~~e------------~ealDt~R~ 1209 (1702)
T KOG0915|consen 1144 VNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYLSLRLINIE------------TEALDTLRA 1209 (1702)
T ss_pred hHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHHHHhhhhhH------------HHHHHHHHH
Confidence 568999999999998775432 22222 35677777666555544333221111111 111222211
Q ss_pred hhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcC-CHHHHHHHHHHHHHhc--CChhhHHHHHHH
Q 047123 379 LIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRG-NVLLQQVSSSLLGNLS--ISDGNKRAVASC 455 (579)
Q Consensus 379 ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~-~~~v~~~A~~aL~~L~--~~~~~~~~i~~~ 455 (579)
-...++ .+.+..-.+|.++ -..+++ ..++.+.++++++ ....+..++..+.-|+ ...+...+-+.-
T Consensus 1210 s~akss---pmmeTi~~ci~~i-----D~~vLe---elip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKl 1278 (1702)
T KOG0915|consen 1210 SAAKSS---PMMETINKCINYI-----DISVLE---ELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKL 1278 (1702)
T ss_pred hhhcCC---cHHHHHHHHHHhh-----hHHHHH---HHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHH
Confidence 111111 1222211122211 112333 3788899999765 4466677777777777 334444444444
Q ss_pred HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcc--hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhH
Q 047123 456 MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSN--RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGC 533 (579)
Q Consensus 456 v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~--~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~ 533 (579)
+..++..+ ++.+..++...+.|.+.|+..+.. .+..+. ..+-.++.+.++. +..++..+.+++.+..
T Consensus 1279 l~al~~g~-~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie-----~~l~~~l~k~es~--~siscatis~Ian~s~--- 1347 (1702)
T KOG0915|consen 1279 LRALFPGA-KDRNESVRKAFASAMGYLAKFSSPDQMQKLIE-----TLLADLLGKDESL--KSISCATISNIANYSQ--- 1347 (1702)
T ss_pred HHHHhhcc-ccccHHHHHHHHHHHHHHHhcCChHHHHHHHH-----HHHHHHhccCCCc--cchhHHHHHHHHHhhH---
Confidence 77777888 668899999999999999876432 222321 2233344444333 3555555555554432
Q ss_pred HHHHHH-cCchHHHHhhhccCC
Q 047123 534 RKRLVA-AGAYQHLQKLAETEV 554 (579)
Q Consensus 534 r~~i~~-~g~~~~L~~L~~~~~ 554 (579)
..+-+ +.++-+|+-+...++
T Consensus 1348 -e~Lkn~asaILPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1348 -EMLKNYASAILPLIFLAMHEE 1368 (1702)
T ss_pred -HHHHhhHHHHHHHHHHHHhHH
Confidence 22221 334555666655554
No 105
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.59 E-value=0.0021 Score=62.04 Aligned_cols=182 Identities=19% Similarity=0.175 Sum_probs=115.5
Q ss_pred hccCCHHHHHHHHHHHHHHhccC--hhhHHHHHh--hCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhc
Q 047123 171 LQIGGVEFKKKALESLLQLLKDD--DKSAAVVAK--EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEE 246 (579)
Q Consensus 171 L~~~~~~~~~~Al~~L~~l~~~~--~~~~~~i~~--~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~ 246 (579)
-.+.+++.|.+|+..|..++..+ ......+.. ...+..+...+. +....+...|+.++..++. .-...-.-.-.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-d~Rs~v~~~A~~~l~~l~~-~l~~~~~~~~~ 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLS-DLRSKVSKTACQLLSDLAR-QLGSHFEPYAD 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHH-HHGGGGHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHh-hhHHHHHHHHHHHHHHHHH-HHhHhHHHHHH
Confidence 35678999999999999998877 223333221 255667777777 6667888899999999987 32222111134
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChh-----h
Q 047123 247 GGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVED-----I 321 (579)
Q Consensus 247 g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~-----~ 321 (579)
..+|+|++.+.++...+++.|..+|..+..+-.....+ ..+.+...+.+.++.++..++..+..+...-. .
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 57899999999999999999999999998653311111 14667777888999999999999988755222 1
Q ss_pred HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123 322 KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA 358 (579)
Q Consensus 322 ~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~ 358 (579)
.....-...++.+...+.+.++++|..|-.++..+..
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 1111113467888888999999999999999998854
No 106
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.59 E-value=0.012 Score=62.02 Aligned_cols=296 Identities=16% Similarity=0.137 Sum_probs=172.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhccCh--hhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh
Q 047123 162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDD--KSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDES 239 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~--~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~ 239 (579)
..|...+.+|++..+++|..|+.....++.--. ..-+.+...|. .|.+-|. ..++++.-..+.++..+.. .-..
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lg-e~ypEvLgsil~Ai~~I~s-v~~~ 679 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLG-EDYPEVLGSILKAICSIYS-VHRF 679 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcC-cccHHHHHHHHHHHHHHhh-hhcc
Confidence 368888999999999999999888877753111 11122233332 3556676 7778888877777777765 2222
Q ss_pred HH-HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-Cc---cHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Q 047123 240 RK-IVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PE---NAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRN 314 (579)
Q Consensus 240 ~~-~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-~~---~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~n 314 (579)
+. +---.|.+|.|..+|++....++.+....+..++.+ ++ .++. ..+.-.|+..|.+-+.+++.+|...+..
T Consensus 680 ~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEW---MRIcfeLvd~Lks~nKeiRR~A~~tfG~ 756 (975)
T COG5181 680 RSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREW---MRICFELVDSLKSWNKEIRRNATETFGC 756 (975)
T ss_pred cccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHH---HHHHHHHHHHHHHhhHHHHHhhhhhhhh
Confidence 21 111258899999999999999999999999999853 33 2333 2456678888899999999999988887
Q ss_pred hhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-cCcHHHHHHhhccC-CCChHHHHH
Q 047123 315 IAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQ-ERGLQRLMHLIQDS-TSSIVTVEN 392 (579)
Q Consensus 315 Ls~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~-~g~i~~Lv~ll~~~-~~~~~~~~~ 392 (579)
++.. +.-+.++..|++-|+.++- +...+.+++- ..+.+ .|-...|-.++.+. .+...+|.-
T Consensus 757 Is~a------iGPqdvL~~LlnnLkvqeR--q~RvctsvaI---------~iVae~cgpfsVlP~lm~dY~TPe~nVQnG 819 (975)
T COG5181 757 ISRA------IGPQDVLDILLNNLKVQER--QQRVCTSVAI---------SIVAEYCGPFSVLPTLMSDYETPEANVQNG 819 (975)
T ss_pred HHhh------cCHHHHHHHHHhcchHHHH--Hhhhhhhhhh---------hhhHhhcCchhhHHHHHhcccCchhHHHHh
Confidence 7652 1122234444444433322 2222222211 01111 23222333333332 232355655
Q ss_pred HHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhhH--HHHHHHHHHHHHhccCCCC
Q 047123 393 ALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSIS-DGNK--RAVASCMGSLIKLMECPKP 468 (579)
Q Consensus 393 A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~-~~~~--~~i~~~v~~Lv~lL~~~~~ 468 (579)
.+.++..+-.+ .....=... ...+.|-..|.+.++.-++.|...+.+|+-+ +..- .++..-+..|+.-+ -..+
T Consensus 820 vLkam~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNI-le~s 896 (975)
T COG5181 820 VLKAMCFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNI-LEPS 896 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhc-cCCC
Confidence 55555544433 222221122 3566777788888999999999999999933 2211 12111133443322 2345
Q ss_pred HhHHHHHHHHHHHhhc
Q 047123 469 VGLQEAATDAVLSLLT 484 (579)
Q Consensus 469 ~~v~~~a~~aL~~L~~ 484 (579)
+.++..--+.+-.++.
T Consensus 897 Phvi~~~~Eg~e~~~~ 912 (975)
T COG5181 897 PHVIQSFDEGMESFAT 912 (975)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 6666666666665553
No 107
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.00041 Score=71.67 Aligned_cols=186 Identities=10% Similarity=0.068 Sum_probs=142.3
Q ss_pred HHHHHHHHHHhhcC-hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccC
Q 047123 305 QSHAVGAIRNIAAV-EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDS 383 (579)
Q Consensus 305 ~~~a~~aL~nLs~~-~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~ 383 (579)
...++.+|..++.. .-.|.-+.+..+++.|+++|+.++..+.--+...++|+.....+.+..+.+.|.+..|+.++.+.
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 34555566666663 34567778888999999999987777777788888888876667899999999999999999877
Q ss_pred CCChHHHHHHHHHHHHcccc-h--hHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC----hhhHHHHHHH-
Q 047123 384 TSSIVTVENALLAISSLSLS-D--SAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSIS----DGNKRAVASC- 455 (579)
Q Consensus 384 ~~~~~~~~~A~~aL~~L~~~-~--~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~----~~~~~~i~~~- 455 (579)
++ .++.+..+.++.+..+ + ..-..+.. -++..++.+.+..+-.+|......++|++.+ ++.+..+...
T Consensus 486 Dd--aLqans~wvlrHlmyncq~~ekf~~Lak--ig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~ 561 (743)
T COG5369 486 DD--ALQANSEWVLRHLMYNCQKNEKFKFLAK--IGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKAT 561 (743)
T ss_pred hh--hhhhcchhhhhhhhhcCcchhhhhhHHh--cCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecC
Confidence 65 8999999999999987 2 22345555 6788999999999999999999999999842 2233322222
Q ss_pred -----HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhh
Q 047123 456 -----MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRD 495 (579)
Q Consensus 456 -----v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~ 495 (579)
...|++.+ ..+++-..+..+..|.+++.++.+.+.++.+
T Consensus 562 p~~ylfk~l~~k~-e~~np~~i~~~~yilv~~aa~d~~l~~~V~~ 605 (743)
T COG5369 562 PRRYLFKRLIDKY-EENNPMEILEGCYILVRNAACDDTLDYIVQS 605 (743)
T ss_pred hHHHHHHHHHHHH-HhcCchhhhhhHHHHHHHHhccchHHHHHHh
Confidence 66777778 5555666666788999998888887766643
No 108
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.52 E-value=0.0028 Score=70.43 Aligned_cols=178 Identities=18% Similarity=0.132 Sum_probs=135.9
Q ss_pred HHHHHHHHHHhhcChhh----HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhh
Q 047123 305 QSHAVGAIRNIAAVEDI----KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLI 380 (579)
Q Consensus 305 ~~~a~~aL~nLs~~~~~----~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll 380 (579)
|.+-+++|.-|+..-+. ...-..-|+.|-++++|++...+++...+.+=+.+-.-|+.++..++++++-.-.++.+
T Consensus 484 QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 484 QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence 55666666666553221 22223568999999999999888888877777777666778899999988888888888
Q ss_pred cc-CCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcC-CHHHHHHHHHHHHHhc-CChhhHHHHHHH
Q 047123 381 QD-STSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRG-NVLLQQVSSSLLGNLS-ISDGNKRAVASC 455 (579)
Q Consensus 381 ~~-~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~-~~~v~~~A~~aL~~L~-~~~~~~~~i~~~ 455 (579)
.+ ..-+++-+.+|+.+|..++.+ -.....++. +.+..-+..|+++ .+-.++..+-.|..|= ..++.|-.=.+.
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~--~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~ 641 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNG--NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRD 641 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccc--cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccc
Confidence 77 333358899999999999988 445667777 8888888888886 6888999999999987 444444322222
Q ss_pred --HHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123 456 --MGSLIKLMECPKPVGLQEAATDAVLSLLTV 485 (579)
Q Consensus 456 --v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~ 485 (579)
.+.|+.+| .+..++||.+|..||+.+...
T Consensus 642 ~AhekL~~~L-sD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 642 NAHEKLILLL-SDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred cHHHHHHHHh-cCccHHHHHHHHHHHHHHhcc
Confidence 89999999 677899999999999999875
No 109
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.49 E-value=0.023 Score=55.50 Aligned_cols=260 Identities=18% Similarity=0.079 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcC-CHHHHHHHH
Q 047123 178 FKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEG-GLGPLLRIL 256 (579)
Q Consensus 178 ~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g-~l~~Lv~lL 256 (579)
.+..-+..+....++++-++..-.- =+...|-++++ .-++-.+.-|++++.++.. .++.|..+-.++ .-..++.++
T Consensus 124 ~k~~f~~vf~~~~~~~~~~v~~~~~-LfleyLgkl~Q-~i~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l 200 (432)
T COG5231 124 HKKEFLSVFKQMLKDNTSYVESNYL-LFLEYLGKLSQ-LIDFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEIL 200 (432)
T ss_pred HHHHHHHHHHHHccCchHHHhhhHH-HHHHHHHHHHH-HHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHH
Confidence 3444455555554444433221110 01223333444 4456678899999999999 999998877665 445678888
Q ss_pred cc--CCHHHHHHHHHHHHHhcCCCccHHHHHh-cCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhc-Ch-hhHHHHHHcCC
Q 047123 257 ET--GSMPLKEKAAIGVEAITTDPENAWAISA-YGGVSVLIEAFRSG-TALTQSHAVGAIRNIAA-VE-DIKAALAEEGA 330 (579)
Q Consensus 257 ~~--~~~~v~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLs~-~~-~~~~~l~~~g~ 330 (579)
.. |...+|.....+++-|+.++++.+.+-. ...+.-|+.+.+.. ...+...+++.+.|++. .+ ..-..+.-.|-
T Consensus 201 ~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~ 280 (432)
T COG5231 201 QNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLND 280 (432)
T ss_pred HhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcc
Confidence 76 4678999999999999999998866655 45677788887764 34677888888999887 22 33334444554
Q ss_pred HHHHHHHhcC---CCHHHHHHHHHH-------HHHHhcCCh---------------h--------hHHHHHh--cCcHHH
Q 047123 331 VPVLVQSLTS---SSNLAQENAADC-------IATLAASGE---------------Y--------FRLLIIQ--ERGLQR 375 (579)
Q Consensus 331 v~~Lv~lL~~---~~~~v~~~a~~~-------L~~La~~~~---------------~--------~r~~l~~--~g~i~~ 375 (579)
+...++.|.. .+++++...-.. =..++..|. . .-..+.+ ...+..
T Consensus 281 ~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~ 360 (432)
T COG5231 281 ISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKV 360 (432)
T ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHH
Confidence 5555666632 233333222111 111121110 0 1122222 235678
Q ss_pred HHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123 376 LMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS 443 (579)
Q Consensus 376 Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~ 443 (579)
|.++++...++ .....|+.-|..+... +....+... |+-..+.+++++.+++|+.+|..++..+.
T Consensus 361 L~~~lq~n~~n-t~i~vAc~Di~~~Vr~~PE~~~vl~Ky--g~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 361 LKKYLQSNNPN-TWICVACSDIFQLVRASPEINAVLSKY--GVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHhcCCCC-ceEeeeHhhHHHHHHhCchHHHHHHHh--hhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 88888887762 3455677777777766 445556666 99999999999999999999999987654
No 110
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.024 Score=60.53 Aligned_cols=242 Identities=13% Similarity=0.091 Sum_probs=156.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-C--h----hhHHH
Q 047123 252 LLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-V--E----DIKAA 324 (579)
Q Consensus 252 Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~--~----~~~~~ 324 (579)
++.+..+.+..|+..|+.+|-.|+..-..... .....++++++.+..++..|+..++-.+. . + .....
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 77788888999999999999888863332222 23677889999999999999877755443 1 1 11222
Q ss_pred HHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHc--cc
Q 047123 325 LAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSL--SL 402 (579)
Q Consensus 325 l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L--~~ 402 (579)
+.+ .++..+...+.+.+-.++..|..+|+.+....+.+-.+..+......+-+.=. ..+.......+- ++
T Consensus 278 l~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~-------ahkrpk~l~s~GewSs 349 (823)
T KOG2259|consen 278 LKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRT-------AHKRPKALYSSGEWSS 349 (823)
T ss_pred hHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhh-------cccchHHHHhcCCccc
Confidence 222 35667778888888889999999888876544333222222222221111000 000000111111 00
Q ss_pred -------------chhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCC
Q 047123 403 -------------SDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPK 467 (579)
Q Consensus 403 -------------~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~ 467 (579)
.+....++.+ |+-..++.-|++.-.+|+..|...++.|+ .+|.. ... ++.|+.++ +++
T Consensus 350 Gk~~~advpsee~d~~~~siI~s--GACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F----A~~aldfLvDMf-NDE 422 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPS--GACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF----AVRALDFLVDMF-NDE 422 (823)
T ss_pred CccccccCchhhccccccccccc--cccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHh-ccH
Confidence 1234457777 88888888888888999999999999999 55553 233 88999999 888
Q ss_pred CHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHH
Q 047123 468 PVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVM 520 (579)
Q Consensus 468 ~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~ 520 (579)
..+||..|..+|..++..-. + .+.-++.++..|++.+.+ +++..--
T Consensus 423 ~~~VRL~ai~aL~~Is~~l~-----i-~eeql~~il~~L~D~s~d-vRe~l~e 468 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVHLA-----I-REEQLRQILESLEDRSVD-VREALRE 468 (823)
T ss_pred HHHHHHHHHHHHHHHHHHhe-----e-cHHHHHHHHHHHHhcCHH-HHHHHHH
Confidence 89999999999999987522 2 234456777777777766 5555444
No 111
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.39 E-value=0.0048 Score=64.98 Aligned_cols=259 Identities=14% Similarity=0.069 Sum_probs=158.1
Q ss_pred cHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh--HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHH
Q 047123 205 NVGYLISLLDFHHQSSIREQAVLALSIIVSANDES--RKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAW 282 (579)
Q Consensus 205 ~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~--~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~ 282 (579)
.|...+.+|+ ++.+.+|+.|+...+.|+.--..| -+.+...|. .|.+-|....+++.-....+++.+......+.
T Consensus 605 ivStiL~~L~-~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLR-SKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 4556677888 999999999999988887611112 122223332 35666677788888887777777764322110
Q ss_pred -HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-hh---hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047123 283 -AISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV-ED---IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLA 357 (579)
Q Consensus 283 -~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~-~~---~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La 357 (579)
.---.|++|.|..+|++....++.+.+..+..++.+ ++ .|+-|. +--.|+..|.+.+.+++..|..+++.++
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 001157889999999999999999999999888873 32 233322 2234677788889999999999988876
Q ss_pred cCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHH
Q 047123 358 ASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSS 437 (579)
Q Consensus 358 ~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~ 437 (579)
.. +.-..++..|+.-|+.... +.+....-+|.-.+.. +. -. .+++.|+.=-...+..||.-.++
T Consensus 759 ~a-------iGPqdvL~~LlnnLkvqeR--q~RvctsvaI~iVae~--cg---pf--sVlP~lm~dY~TPe~nVQnGvLk 822 (975)
T COG5181 759 RA-------IGPQDVLDILLNNLKVQER--QQRVCTSVAISIVAEY--CG---PF--SVLPTLMSDYETPEANVQNGVLK 822 (975)
T ss_pred hh-------cCHHHHHHHHHhcchHHHH--HhhhhhhhhhhhhHhh--cC---ch--hhHHHHHhcccCchhHHHHhHHH
Confidence 42 1112234445444444322 1121111122111111 00 00 34555555556677788988888
Q ss_pred HHHHhc--CChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCC
Q 047123 438 LLGNLS--ISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVR 486 (579)
Q Consensus 438 aL~~L~--~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~ 486 (579)
+++.+- .....++++-.-.|.|-..| .+.++.-|.-|...+.+|+...
T Consensus 823 am~fmFeyig~~s~dYvy~itPlleDAl-tDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 823 AMCFMFEYIGQASLDYVYSITPLLEDAL-TDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhh-cccchHHHHHHHHHHHHHhcCC
Confidence 877765 22222233322255555567 6677888999999999998653
No 112
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.034 Score=60.20 Aligned_cols=322 Identities=12% Similarity=0.097 Sum_probs=187.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhcc--ChhhHHH
Q 047123 165 RDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSA--NDESRKI 242 (579)
Q Consensus 165 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~--~~~~~~~ 242 (579)
.++..-|..|+.+.+.+|+..+..+....+..-.. +-.++++.-.+.+.+++.--...+..+-.. +....+.
T Consensus 23 ~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~L------lm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~E 96 (948)
T KOG1058|consen 23 DEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSL------LMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHE 96 (948)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHH------HHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHH
Confidence 35677889999999999998887776555433221 222222211144555554433333333221 1122222
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhH
Q 047123 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIK 322 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~ 322 (579)
|+ =++..+-+=|.+++..+|....+.|++|-.- |.- ...+|.+...+.+.+.-++.+|.-|+..+-.+-
T Consensus 97 MI--Lvcna~RkDLQHPNEyiRG~TLRFLckLkE~-ELl-----epl~p~IracleHrhsYVRrNAilaifsIyk~~--- 165 (948)
T KOG1058|consen 97 MI--LVCNAYRKDLQHPNEYIRGSTLRFLCKLKEP-ELL-----EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF--- 165 (948)
T ss_pred HH--HHHHHHhhhccCchHhhcchhhhhhhhcCcH-HHh-----hhhHHHHHHHHhCcchhhhhhhheeehhHHhhh---
Confidence 22 1345555666778999999988888887531 211 234577777888899999999999988775431
Q ss_pred HHHHHcCCHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcc-CCCChHHHHHHHHHHHHc
Q 047123 323 AALAEEGAVPVLVQSL-TSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQD-STSSIVTVENALLAISSL 400 (579)
Q Consensus 323 ~~l~~~g~v~~Lv~lL-~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~-~~~~~~~~~~A~~aL~~L 400 (579)
+.++- .+-+.+-..| ...++..+.+|.-.|... +++ .++.-|...+.. ++.++.++...+..|+..
T Consensus 166 ~~L~p-DapeLi~~fL~~e~DpsCkRNAFi~L~~~---D~E--------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv 233 (948)
T KOG1058|consen 166 EHLIP-DAPELIESFLLTEQDPSCKRNAFLMLFTT---DPE--------RALNYLLSNIDQIPSFNDSLQLVIVELIRKV 233 (948)
T ss_pred hhhcC-ChHHHHHHHHHhccCchhHHHHHHHHHhc---CHH--------HHHHHHHhhHhhccCccHHHHHHHHHHHHHH
Confidence 01110 1222222333 455677777776555433 222 123333332221 222236777777777777
Q ss_pred ccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHH
Q 047123 401 SLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAV 479 (579)
Q Consensus 401 ~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL 479 (579)
|.. ..-... .++.++..+|.+.++.+..+|++.|.+|+..|..-+.-... ++.+++.- +..++.-..--|
T Consensus 234 ~~~---~p~~~~--~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kes----dnnvklIvldrl 304 (948)
T KOG1058|consen 234 CLA---NPAEKA--RYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKES----DNNVKLIVLDRL 304 (948)
T ss_pred Hhc---CHHHhh--HHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhcc----CcchhhhhHHHH
Confidence 664 111123 68999999999999999999999999999887765554444 44444433 233333233333
Q ss_pred HHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123 480 LSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS 530 (579)
Q Consensus 480 ~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~ 530 (579)
..+. ...+.++ .+-+.-+++.|.+++-+ +++.++.+...|..+..
T Consensus 305 ~~l~---~~~~~il--~~l~mDvLrvLss~dld-vr~Ktldi~ldLvssrN 349 (948)
T KOG1058|consen 305 SELK---ALHEKIL--QGLIMDVLRVLSSPDLD-VRSKTLDIALDLVSSRN 349 (948)
T ss_pred HHHh---hhhHHHH--HHHHHHHHHHcCccccc-HHHHHHHHHHhhhhhcc
Confidence 3333 2233344 34556677888888777 78888888888877764
No 113
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.22 E-value=0.082 Score=50.60 Aligned_cols=242 Identities=16% Similarity=0.186 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHH
Q 047123 176 VEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRI 255 (579)
Q Consensus 176 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~l 255 (579)
...|..|+-.|+++.. +.. +..+-+... +++.......+.+|+.... +..++.|+..
T Consensus 19 l~~r~rALf~Lr~l~~--~~~---------i~~i~ka~~-d~s~llkhe~ay~LgQ~~~-----------~~Av~~l~~v 75 (289)
T KOG0567|consen 19 LQNRFRALFNLRNLLG--PAA---------IKAITKAFI-DDSALLKHELAYVLGQMQD-----------EDAVPVLVEV 75 (289)
T ss_pred HHHHHHHHHhhhccCC--hHH---------HHHHHHhcc-cchhhhccchhhhhhhhcc-----------chhhHHHHHH
Confidence 3445566666666542 222 333333222 2233333344555555555 5567777777
Q ss_pred HccC--CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHH------HH--
Q 047123 256 LETG--SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKA------AL-- 325 (579)
Q Consensus 256 L~~~--~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~------~l-- 325 (579)
|... .+-+|..|+.+|..+. .+ ..++.|-+..++....+++.+-.++..+-....... ..
T Consensus 76 l~desq~pmvRhEAaealga~~-~~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~Sv 145 (289)
T KOG0567|consen 76 LLDESQEPMVRHEAAEALGAIG-DP---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISV 145 (289)
T ss_pred hcccccchHHHHHHHHHHHhhc-ch---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccC
Confidence 7654 3556667777777665 22 233445555544444555555555554422110000 00
Q ss_pred -----HHcCCHHHHHHHhcCCC-HH-HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123 326 -----AEEGAVPVLVQSLTSSS-NL-AQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAIS 398 (579)
Q Consensus 326 -----~~~g~v~~Lv~lL~~~~-~~-v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~ 398 (579)
...+-|..+-..+.+.+ +. -+..+...|.|+-. +..+..+..-+..++ .-.|..++.++.
T Consensus 146 dPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~-----------EeaI~al~~~l~~~S--alfrhEvAfVfG 212 (289)
T KOG0567|consen 146 DPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT-----------EEAINALIDGLADDS--ALFRHEVAFVFG 212 (289)
T ss_pred CCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc-----------HHHHHHHHHhcccch--HHHHHHHHHHHh
Confidence 01112233322222221 21 23334444444322 123455555555553 367778888888
Q ss_pred HcccchhHHHHHhhcCcHHHHHHHHHh--cCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHH
Q 047123 399 SLSLSDSAARILSSTTSFIIQLGEFIK--RGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAAT 476 (579)
Q Consensus 399 ~L~~~~~~~~l~~~~~g~i~~L~~lL~--~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~ 476 (579)
.|-.. -.++.|.+.|. ..++-||..|+.||+.++..+- ++.|.+.+ ++...-+++.|.
T Consensus 213 Ql~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~--------~~vL~e~~-~D~~~vv~esc~ 272 (289)
T KOG0567|consen 213 QLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDC--------VEVLKEYL-GDEERVVRESCE 272 (289)
T ss_pred hccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHH--------HHHHHHHc-CCcHHHHHHHHH
Confidence 87655 56777777774 4578999999999999985544 78888888 666778888888
Q ss_pred HHHHHhh
Q 047123 477 DAVLSLL 483 (579)
Q Consensus 477 ~aL~~L~ 483 (579)
-+|-.+-
T Consensus 273 valdm~e 279 (289)
T KOG0567|consen 273 VALDMLE 279 (289)
T ss_pred HHHHHHH
Confidence 8776654
No 114
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.19 E-value=0.43 Score=50.60 Aligned_cols=345 Identities=14% Similarity=0.087 Sum_probs=182.3
Q ss_pred HHHHHHhccCCH---HHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChh---
Q 047123 165 RDIFTRLQIGGV---EFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDE--- 238 (579)
Q Consensus 165 ~~Lv~~L~~~~~---~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~--- 238 (579)
+.++..|...+. ......+..|..+|...+-.... .. ..+..|-...+...+.+.-...+.+|..+.....+
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~-~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~ 79 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQILETL-SI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ 79 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHH-HH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence 345566655443 55677888898888654322222 11 33333333333122455555666667666542222
Q ss_pred --hHHHHHhcCCHHHHHHHHccC-----C--HHHHHHHHHHHHHhcC--CCccHHHHHhcCcHHHHHHHhc---------
Q 047123 239 --SRKIVFEEGGLGPLLRILETG-----S--MPLKEKAAIGVEAITT--DPENAWAISAYGGVSVLIEAFR--------- 298 (579)
Q Consensus 239 --~~~~i~~~g~l~~Lv~lL~~~-----~--~~v~~~aa~~L~~Ls~--~~~~~~~i~~~g~i~~Lv~ll~--------- 298 (579)
......+...++.+++..-.. + ..+-..+..++..+.. +.+.+..+ +..+..+.-
T Consensus 80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~-----~~~~~~lf~~~~~~~~~~ 154 (415)
T PF12460_consen 80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI-----LDELYSLFLSPKSFSPFQ 154 (415)
T ss_pred cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHccccccCCCC
Confidence 234445555788887777442 1 3455555555555542 33334333 233333222
Q ss_pred -CC------CHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 047123 299 -SG------TALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSL-TSSSNLAQENAADCIATLAASGEYFRLLIIQE 370 (579)
Q Consensus 299 -~~------~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL-~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~ 370 (579)
.. ......-...++..+-..-... .. ...+..++.+. ...++..+..++.+++.+...-+... .-.
T Consensus 155 ~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~--~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~ 228 (415)
T PF12460_consen 155 PSSSTISEQQSRLVILFSAILCSLRKDVSLP-DL--EELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLD 228 (415)
T ss_pred ccccccccccccHHHHHHHHHHcCCcccCcc-CH--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHH
Confidence 01 1112222223333332211111 11 11556666664 44567888888888888876421100 001
Q ss_pred CcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhh
Q 047123 371 RGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSIS-DGN 448 (579)
Q Consensus 371 g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~-~~~ 448 (579)
..+..+...+.+... ...+..+...+.-++.. -.+..-... ..+..|+.++.+ +++...++.++.-|..+ ++.
T Consensus 229 ~~l~~~~~~~~~~~~-~~~~~~~~~~~~Wi~KaLv~R~~~~~~--~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~ 303 (415)
T PF12460_consen 229 EFLDSLLQSISSSED-SELRPQALEILIWITKALVMRGHPLAT--ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDV 303 (415)
T ss_pred HHHHHHHhhhcccCC-cchhHHHHHHHHHHHHHHHHcCCchHH--HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHh
Confidence 223333333311111 23444555444433332 000000111 356678888876 66778888888888743 332
Q ss_pred -------------HHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhh-cccHHHHHhhcCCCchhh
Q 047123 449 -------------KRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRD-EKSVMRLMQMLDPKNEAL 513 (579)
Q Consensus 449 -------------~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~-~~~i~~Lv~lL~~~~~~~ 513 (579)
++.+... +|.|++-. ...+.+.+.....||.++...-+... +..+ ...++.|++-|+.++.+
T Consensus 304 l~~~~~a~vklLykQR~F~~~~p~L~~~~-~~~~~~~k~~yL~ALs~ll~~vP~~v-l~~~l~~LlPLLlqsL~~~~~~- 380 (415)
T PF12460_consen 304 LNKENHANVKLLYKQRFFTQVLPKLLEGF-KEADDEIKSNYLTALSHLLKNVPKSV-LLPELPTLLPLLLQSLSLPDAD- 380 (415)
T ss_pred cCccccchhhhHHhHHHHHHHHHHHHHHH-hhcChhhHHHHHHHHHHHHhhCCHHH-HHHHHHHHHHHHHHHhCCCCHH-
Confidence 3344444 89999988 44455589999999999998665332 2222 34678889999888776
Q ss_pred hhHHHHHHHHHHhCCCC
Q 047123 514 NKKFPVMVTAAVLGGGS 530 (579)
Q Consensus 514 ~k~~av~~L~~L~~~~~ 530 (579)
.+..++.+|..+....+
T Consensus 381 v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 381 VLLSSLETLKMILEEAP 397 (415)
T ss_pred HHHHHHHHHHHHHHcCH
Confidence 78888888888876654
No 115
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.16 E-value=0.0047 Score=59.68 Aligned_cols=182 Identities=14% Similarity=0.124 Sum_probs=112.9
Q ss_pred CCCHHHHHHHHHHHHHhhccC--hhhHHHHHhc--CCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHH
Q 047123 216 HHQSSIREQAVLALSIIVSAN--DESRKIVFEE--GGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVS 291 (579)
Q Consensus 216 ~~~~~~~~~A~~aL~~La~~~--~~~~~~i~~~--g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~ 291 (579)
+.+-..|..|+.-|..+...+ ......++.. ..+..++..+.+....+...|+.++..++..-.....-.-...++
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~ 97 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLP 97 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 567889999999999887744 2333333322 566777777777778889999999999984322222222345789
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--
Q 047123 292 VLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQ-- 369 (579)
Q Consensus 292 ~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~-- 369 (579)
.|++.+.++...++..|..+|..+..+-.....+ .++.+...+.+.++.++..++.++..+....+.....+..
T Consensus 98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~ 173 (228)
T PF12348_consen 98 PLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSA 173 (228)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence 9999999999999999999999998754411111 1455666778899999999999999987644310111111
Q ss_pred --cCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc
Q 047123 370 --ERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS 403 (579)
Q Consensus 370 --~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~ 403 (579)
...++.+...+.+.++ ++|+.|..+++.+...
T Consensus 174 ~~~~l~~~l~~~l~D~~~--~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 174 FLKQLVKALVKLLSDADP--EVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHHHTSS-H--HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHH
Confidence 3456677777777776 9999999999998765
No 116
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.15 E-value=0.059 Score=60.25 Aligned_cols=344 Identities=14% Similarity=0.103 Sum_probs=175.6
Q ss_pred hHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccC
Q 047123 158 QDLVLFIRDIFTRLQI-GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAN 236 (579)
Q Consensus 158 ~~~~~~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~ 236 (579)
+.+...++.+...+-. .++.+|..+...+..+++.-+... ...+.++.+.++.. +....+|+.|...+.++.. .
T Consensus 232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~---~~s~v~~~~~~L~~-DdqdsVr~~a~~~~~~l~~-l 306 (759)
T KOG0211|consen 232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEI---VKSEVLPTLIQLLR-DDQDSVREAAVESLVSLLD-L 306 (759)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHH---HHhhccHHHhhhhh-cchhhHHHHHHHHHHHHHH-h
Confidence 5677777887777754 566777777777887776444332 23567888888888 8888888888777776664 1
Q ss_pred hhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc---------------------------------------C-
Q 047123 237 DESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAIT---------------------------------------T- 276 (579)
Q Consensus 237 ~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls---------------------------------------~- 276 (579)
-..... ...-..+.+++..++++..++...+.....|. .
T Consensus 307 ~~~~~d-~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~ 385 (759)
T KOG0211|consen 307 LDDDDD-VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACY 385 (759)
T ss_pred cCCchh-hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhh
Confidence 111101 11223555555555555554444443333332 1
Q ss_pred -CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHH
Q 047123 277 -DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIAT 355 (579)
Q Consensus 277 -~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~ 355 (579)
+.++...+.....++.+-.++.+.+..++...+..+.+++-.-. +..- -.-..|.++..+++..+.++.+....+..
T Consensus 386 l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~t-i~~llp~~~~~l~de~~~V~lnli~~ls~ 463 (759)
T KOG0211|consen 386 LNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERT-ISELLPLLIGNLKDEDPIVRLNLIDKLSL 463 (759)
T ss_pred cCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcC-ccccChhhhhhcchhhHHHHHhhHHHHHH
Confidence 11222222233333444444444444444444333333321000 0000 01134555556677778888888876655
Q ss_pred HhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHH
Q 047123 356 LAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVS 435 (579)
Q Consensus 356 La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A 435 (579)
+-..++..-.....+-.++.+..+-..... .++......+..++.... ..++.. -..+.+...+.+....++..|
T Consensus 464 ~~~v~~v~g~~~~s~slLp~i~el~~d~~w--Rvr~ail~~ip~la~q~~-~~~~~~--~~~~l~~~~l~d~v~~Ir~~a 538 (759)
T KOG0211|consen 464 LEEVNDVIGISTVSNSLLPAIVELAEDLLW--RVRLAILEYIPQLALQLG-VEFFDE--KLAELLRTWLPDHVYSIREAA 538 (759)
T ss_pred HHhccCcccchhhhhhhhhhhhhhccchhH--HHHHHHHHHHHHHHHhhh-hHHhhH--HHHHHHHhhhhhhHHHHHHHH
Confidence 543333333334444555666665555443 666666677776666522 222222 234444455566667788888
Q ss_pred HHHHHHhcCChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhh
Q 047123 436 SSLLGNLSISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALN 514 (579)
Q Consensus 436 ~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~ 514 (579)
+.-+..++..-. .+.-... ++.++.+. ..++.-.|...+.++..++.... +.+. ...-++.+.++..+..++ +
T Consensus 539 a~~l~~l~~~~G-~~w~~~~~i~k~L~~~-~q~~y~~R~t~l~si~~la~v~g--~ei~-~~~Llp~~~~l~~D~van-V 612 (759)
T KOG0211|consen 539 ARNLPALVETFG-SEWARLEEIPKLLAMD-LQDNYLVRMTTLFSIHELAEVLG--QEIT-CEDLLPVFLDLVKDPVAN-V 612 (759)
T ss_pred HHHhHHHHHHhC-cchhHHHhhHHHHHHh-cCcccchhhHHHHHHHHHHHHhc--cHHH-HHHHhHHHHHhccCCchh-h
Confidence 777777761111 1112222 66666666 33345556555555554442211 1111 133445555555555544 3
Q ss_pred hHHHHH
Q 047123 515 KKFPVM 520 (579)
Q Consensus 515 k~~av~ 520 (579)
+-.++-
T Consensus 613 R~nvak 618 (759)
T KOG0211|consen 613 RINVAK 618 (759)
T ss_pred hhhHHH
Confidence 433333
No 117
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.13 E-value=0.058 Score=51.59 Aligned_cols=216 Identities=18% Similarity=0.207 Sum_probs=140.9
Q ss_pred CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhc-cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHH
Q 047123 174 GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLD-FHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPL 252 (579)
Q Consensus 174 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~-~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~L 252 (579)
++...+...+.+|++.. ....|+.|+..|. .+..+-+|..|+.+|+.+.. ...++.+
T Consensus 48 ~s~llkhe~ay~LgQ~~-----------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l 105 (289)
T KOG0567|consen 48 DSALLKHELAYVLGQMQ-----------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEIL 105 (289)
T ss_pred chhhhccchhhhhhhhc-----------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHH
Confidence 33344445555555543 3557999998765 24458899999999999986 4566777
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcCCCccHH-----HH--------HhcCcHHHHHHHhcCCCH-H-HHHHHHHHHHHhhc
Q 047123 253 LRILETGSMPLKEKAAIGVEAITTDPENAW-----AI--------SAYGGVSVLIEAFRSGTA-L-TQSHAVGAIRNIAA 317 (579)
Q Consensus 253 v~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~-----~i--------~~~g~i~~Lv~ll~~~~~-~-~~~~a~~aL~nLs~ 317 (579)
-++.+++...+++.+..++..+-+...... .+ ...+-+..|-..+.+.+. . -+..+.-.|+|+-.
T Consensus 106 ~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~ 185 (289)
T KOG0567|consen 106 TKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT 185 (289)
T ss_pred HHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc
Confidence 777777778888887777777753111000 00 111223444444433332 1 13333344444322
Q ss_pred ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHH
Q 047123 318 VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAI 397 (579)
Q Consensus 318 ~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL 397 (579)
. ..|..++.-+..++.-.+..+..+++.|-+ .-.++.|.+.|......+-+|-.|+.||
T Consensus 186 E----------eaI~al~~~l~~~SalfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeAL 244 (289)
T KOG0567|consen 186 E----------EAINALIDGLADDSALFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEAL 244 (289)
T ss_pred H----------HHHHHHHHhcccchHHHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHH
Confidence 1 245666677777788889999999888754 3358888888887776668999999999
Q ss_pred HHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123 398 SSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS 443 (579)
Q Consensus 398 ~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~ 443 (579)
..++.. ..+..|.+++...++-+++.+.-+|--+-
T Consensus 245 GaIa~e-----------~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 245 GAIADE-----------DCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HhhcCH-----------HHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 999876 56777777888888888887777765543
No 118
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.10 E-value=0.12 Score=54.63 Aligned_cols=257 Identities=14% Similarity=0.156 Sum_probs=122.1
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 047123 207 GYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISA 286 (579)
Q Consensus 207 ~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~ 286 (579)
|.|-.-|+ +.-.-++..++++++.++..+ ....++ ...+..|-.+|++.....|-.|.++|..|+...+.+...+.
T Consensus 267 pfL~~wls-~k~emV~lE~Ar~v~~~~~~n--v~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN 342 (898)
T COG5240 267 PFLNSWLS-DKFEMVFLEAARAVCALSEEN--VGSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN 342 (898)
T ss_pred HHHHHHhc-CcchhhhHHHHHHHHHHHHhc--cCHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC
Confidence 33444444 444778889999999888722 122222 23467777778888888999999999999942221111111
Q ss_pred cCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhH--
Q 047123 287 YGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFR-- 364 (579)
Q Consensus 287 ~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r-- 364 (579)
+.+-.++.+.+..+-..|+..|.. ...+++-..++. .|+. ++++-+++.+.-++.++..|+...+.-+
T Consensus 343 ----~evEsLIsd~Nr~IstyAITtLLK-TGt~e~idrLv~--~I~s---fvhD~SD~FKiI~ida~rsLsl~Fp~k~~s 412 (898)
T COG5240 343 ----KEVESLISDENRTISTYAITTLLK-TGTEETIDRLVN--LIPS---FVHDMSDGFKIIAIDALRSLSLLFPSKKLS 412 (898)
T ss_pred ----hhHHHHhhcccccchHHHHHHHHH-cCchhhHHHHHH--HHHH---HHHhhccCceEEeHHHHHHHHhhCcHHHHH
Confidence 111122223332222222222221 122233222221 1222 2222222233333333333332222211
Q ss_pred ------HHHHhcCcH-------HHHHHhhccCCCChHHHHHHHHHHHHcccc----hhHHHHHh---h------cC-cHH
Q 047123 365 ------LLIIQERGL-------QRLMHLIQDSTSSIVTVENALLAISSLSLS----DSAARILS---S------TT-SFI 417 (579)
Q Consensus 365 ------~~l~~~g~i-------~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~----~~~~~l~~---~------~~-g~i 417 (579)
..+.++|+. +.+..+++... +.++.|+..|+..... ...-.++. . .+ .++
T Consensus 413 ~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p---~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yv 489 (898)
T COG5240 413 YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDP---DSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYV 489 (898)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCc---hHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHH
Confidence 122234432 23333333221 3444443333332221 11111110 0 01 234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcC--Chh-hHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhc
Q 047123 418 IQLGEFIKRGNVLLQQVSSSLLGNLSI--SDG-NKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLT 484 (579)
Q Consensus 418 ~~L~~lL~~~~~~v~~~A~~aL~~L~~--~~~-~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~ 484 (579)
..+.+-+--.+.-++..|..+|...+- ++. ..+.+ ...|-+.+ ++++.++|+.|.-+|.++-.
T Consensus 490 rhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv---~~~lkRcl-nD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 490 RHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSV---ENALKRCL-NDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHH---HHHHHHHh-hcccHHHHHHHHHHHHhhhh
Confidence 455555545667788889999988772 221 11111 33455677 78899999999999999863
No 119
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.07 E-value=0.0013 Score=44.36 Aligned_cols=40 Identities=25% Similarity=0.352 Sum_probs=36.5
Q ss_pred CccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 047123 278 PENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA 317 (579)
Q Consensus 278 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~ 317 (579)
++++..+.+.|+++.|+.++.++++.++..++++|+|++.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4578889999999999999999999999999999999863
No 120
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.06 E-value=0.043 Score=62.47 Aligned_cols=299 Identities=15% Similarity=0.118 Sum_probs=182.2
Q ss_pred HHHHHHHhcc-CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc---cChhh
Q 047123 164 IRDIFTRLQI-GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVS---ANDES 239 (579)
Q Consensus 164 v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~---~~~~~ 239 (579)
|.-+...++. ...+.+..|+.-|..++..-+.. ..-.-++|.++.++. ++..++|..|+.+|..+-. +.+..
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de---~~LDRVlPY~v~l~~-Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDE---VKLDRVLPYFVHLLM-DSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH---HHHhhhHHHHHHHhc-CchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 4444444432 34568899999999887522211 122456999999999 9999999999988876543 13333
Q ss_pred HHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 047123 240 RKIVFEEGGLGPLLRILET-GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV 318 (579)
Q Consensus 240 ~~~i~~~g~l~~Lv~lL~~-~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~ 318 (579)
-..++-+=.+|.|-.++.+ ....++..-|..|..|+.. ...|.+.+--.....++++.+.+ ...+.. .
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t---A~rFle~~q~~~~~g~~n~~nse-------t~~~~~-~ 568 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT---AYRFLELTQELRQAGMLNDPNSE-------TAPEQN-Y 568 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH---HHHHHHHHHHHHhcccccCcccc-------cccccc-c
Confidence 3445555678888888887 4566777778888888732 12222221111122223332221 000000 0
Q ss_pred hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123 319 EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAIS 398 (579)
Q Consensus 319 ~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~ 398 (579)
+....++. +++=+....++.+..+-|+..-+..|.-||..... .-.++=.++.|+.+|.+.+. .+|..-..-|.
T Consensus 569 ~~~~~~L~-~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk---~ksND~iLshLiTfLNDkDw--~LR~aFfdsI~ 642 (1431)
T KOG1240|consen 569 NTELQALH-HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK---EKSNDVILSHLITFLNDKDW--RLRGAFFDSIV 642 (1431)
T ss_pred chHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh---cccccchHHHHHHHhcCccH--HHHHHHHhhcc
Confidence 11111121 12223445566666778888888888877752211 00113356888888988765 66665555566
Q ss_pred HcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHH-HHHHHHHHHHHhccCCCCHhHHHHHHH
Q 047123 399 SLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKR-AVASCMGSLIKLMECPKPVGLQEAATD 477 (579)
Q Consensus 399 ~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~-~i~~~v~~Lv~lL~~~~~~~v~~~a~~ 477 (579)
.+|..-.. .-++. ..++.|.+-|.++.+-|...|+.++.-|+...-.++ ++.+-++...-+| ...+.=+|..++.
T Consensus 643 gvsi~VG~-rs~se--yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL-~hPN~WIR~~~~~ 718 (1431)
T KOG1240|consen 643 GVSIFVGW-RSVSE--YLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLL-CHPNLWIRRAVLG 718 (1431)
T ss_pred ceEEEEee-eeHHH--HHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhhe-eCchHHHHHHHHH
Confidence 55555111 11233 678888888999999999999999999986666665 4444466666677 6778899999999
Q ss_pred HHHHhhcCCc
Q 047123 478 AVLSLLTVRS 487 (579)
Q Consensus 478 aL~~L~~~~~ 487 (579)
.+...++.-.
T Consensus 719 iI~~~~~~ls 728 (1431)
T KOG1240|consen 719 IIAAIARQLS 728 (1431)
T ss_pred HHHHHHhhhh
Confidence 9988876543
No 121
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.04 E-value=0.037 Score=56.95 Aligned_cols=176 Identities=9% Similarity=0.083 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHhcCChhhHHH-HHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-----hhHHHHHhhcC-cH
Q 047123 344 LAQENAADCIATLAASGEYFRLL-IIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-----DSAARILSSTT-SF 416 (579)
Q Consensus 344 ~v~~~a~~~L~~La~~~~~~r~~-l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-----~~~~~l~~~~~-g~ 416 (579)
-++..|.+.+.-+.-+. ..|.. ..-..+....+..+.+..- ..++.+++++.|++.. ++.+...+.-- -.
T Consensus 406 lv~~aA~Ra~~VyVLHp-~lr~d~~fv~~aa~~il~sl~d~~l--n~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~l 482 (728)
T KOG4535|consen 406 LVKAAASRALGVYVLHP-CLRQDVIFVADAANAILMSLEDKSL--NVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLL 482 (728)
T ss_pred HHHHHHHhhceeEEecc-chhhhHHHHHHHHHHHHHHhhhHhH--hHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHH
Confidence 35555665555444433 22222 2223344444555555444 6789999999998874 33332222200 12
Q ss_pred HHHHHHHH---hcCCHHHHHHHHHHHHHhcC------ChhhHHHHHHHHHHHHH-hccCCCCHhHHHHHHHHHHHhhcCC
Q 047123 417 IIQLGEFI---KRGNVLLQQVSSSLLGNLSI------SDGNKRAVASCMGSLIK-LMECPKPVGLQEAATDAVLSLLTVR 486 (579)
Q Consensus 417 i~~L~~lL---~~~~~~v~~~A~~aL~~L~~------~~~~~~~i~~~v~~Lv~-lL~~~~~~~v~~~a~~aL~~L~~~~ 486 (579)
+..++..- ......|+.+|..+|.|+.+ ...++..+...+..++. .. ......|+.++|.+++||..+.
T Consensus 483 l~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~-~~~~~kV~WNaCya~gNLfkn~ 561 (728)
T KOG4535|consen 483 LLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVL-TEAAMKVRWNACYAMGNLFKNP 561 (728)
T ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhccccee-cccccccchHHHHHHHHhhcCc
Confidence 22333222 23467899999999999982 12233333333444443 33 4557889999999999998764
Q ss_pred cc-hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHH
Q 047123 487 SN-RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTA 523 (579)
Q Consensus 487 ~~-~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~ 523 (579)
.- .+..-......+.|.+++.+...--++-.|+++|.
T Consensus 562 a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~ 599 (728)
T KOG4535|consen 562 ALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALS 599 (728)
T ss_pred cccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhc
Confidence 32 11111112344567777755432224455555544
No 122
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.03 E-value=0.0017 Score=43.70 Aligned_cols=40 Identities=25% Similarity=0.504 Sum_probs=36.4
Q ss_pred hhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 047123 237 DESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT 276 (579)
Q Consensus 237 ~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~ 276 (579)
++++..+++.|++++|+++|.+++.+++..++++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3578889999999999999999999999999999999873
No 123
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.91 E-value=0.22 Score=55.85 Aligned_cols=142 Identities=16% Similarity=0.108 Sum_probs=83.6
Q ss_pred HHHHHHHHhccCCHH-HHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123 163 FIRDIFTRLQIGGVE-FKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK 241 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~-~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~ 241 (579)
..-.++..+..++.. .|..++..+.......++. .++....+..-++-+ +.++.++..++.-+++++. .-.. .
T Consensus 198 ~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~---~vk~elr~~~~~lc~-d~~~~Vr~~~a~~l~~~a~-~~~~-~ 271 (759)
T KOG0211|consen 198 HLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDD---AVKRELRPIVQSLCQ-DDTPMVRRAVASNLGNIAK-VLES-E 271 (759)
T ss_pred HHHHHHHHccchhhhhcchhhhhhhHHhccCCChH---HHHHHHHHHHHhhcc-ccchhhHHHHHhhhHHHHH-HHHH-H
Confidence 344556666665543 4555555555554433321 122233445555666 7788888888888888887 3222 2
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHH
Q 047123 242 IVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAI 312 (579)
Q Consensus 242 ~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL 312 (579)
.. ..+.++.+..+..+....+++.|...+.++...-+... =..+-..+.+++...+++..++.......
T Consensus 272 ~~-~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~ 340 (759)
T KOG0211|consen 272 IV-KSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVEDGSWRVSYMVADKF 340 (759)
T ss_pred HH-HhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhcChhHHHHHHHhhhh
Confidence 22 25778999999999989999988888887763211111 11123446677776666665554444333
No 124
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.91 E-value=0.0037 Score=45.37 Aligned_cols=53 Identities=19% Similarity=0.124 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHh
Q 047123 429 VLLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSL 482 (579)
Q Consensus 429 ~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L 482 (579)
+.+|..|+++|.+++ ..++..+.+... ++.|+.+| .+++..||..|+.+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L-~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLL-QDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHT-TSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHhcC
Confidence 468999999999998 555555555555 99999999 666779999999999875
No 125
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.87 E-value=0.28 Score=49.90 Aligned_cols=222 Identities=13% Similarity=0.051 Sum_probs=156.7
Q ss_pred HHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhH-----HHHHh--cCcHHHHHHhhccCCCChHHHHHHHHH
Q 047123 324 ALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFR-----LLIIQ--ERGLQRLMHLIQDSTSSIVTVENALLA 396 (579)
Q Consensus 324 ~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r-----~~l~~--~g~i~~Lv~ll~~~~~~~~~~~~A~~a 396 (579)
.+...+.+..|+..|..-+-+.+..++.+..++.......+ ..+.. ...+..|+..-+ ++++--.+-..
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~----~~dial~~g~m 146 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE----NPDIALNCGDM 146 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG----STTTHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc----CccccchHHHH
Confidence 46677888999999988888899999999988876433322 12222 223333333322 24677888888
Q ss_pred HHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH-----HHHHHHhccCCCCH
Q 047123 397 ISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC-----MGSLIKLMECPKPV 469 (579)
Q Consensus 397 L~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-----v~~Lv~lL~~~~~~ 469 (579)
|+.++.. .....++.. ..+..+.+..+..+-++...|...+..+- .+......+... +...-++| .+++.
T Consensus 147 lRec~k~e~l~~~iL~~--~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll-~s~NY 223 (335)
T PF08569_consen 147 LRECIKHESLAKIILYS--ECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLL-ESSNY 223 (335)
T ss_dssp HHHHTTSHHHHHHHHTS--GGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHC-T-SSH
T ss_pred HHHHHhhHHHHHHHhCc--HHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc-cCCCe
Confidence 9998888 456677777 78888999999999999999999999866 777776665555 67777899 88899
Q ss_pred hHHHHHHHHHHHhhcCCcchh---HHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC--hhHHHHHH--HcCc
Q 047123 470 GLQEAATDAVLSLLTVRSNRK---ELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS--NGCRKRLV--AAGA 542 (579)
Q Consensus 470 ~v~~~a~~aL~~L~~~~~~~~---~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~--~~~r~~i~--~~g~ 542 (579)
-.+..+...|+.|..+..|.. ..+.+...+..++.+|.+++.. ++-.|.-+.--+..+++ ++.+..+. ....
T Consensus 224 vtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~-Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kL 302 (335)
T PF08569_consen 224 VTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKN-IQFEAFHVFKVFVANPNKPPPIVDILIKNREKL 302 (335)
T ss_dssp HHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HH-HHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHH
T ss_pred EeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchh-hhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 999999999999999888855 6677777889999999998888 88888888887777663 22333333 2445
Q ss_pred hHHHHhhhccC
Q 047123 543 YQHLQKLAETE 553 (579)
Q Consensus 543 ~~~L~~L~~~~ 553 (579)
+..|.++....
T Consensus 303 l~fl~~f~~~~ 313 (335)
T PF08569_consen 303 LRFLKDFHTDR 313 (335)
T ss_dssp HHHHHTTTTT-
T ss_pred HHHHHhCCCCC
Confidence 55566655444
No 126
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.87 E-value=0.086 Score=51.71 Aligned_cols=223 Identities=10% Similarity=0.054 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHhcCCCccHHHHHhcC-cHHHHHHHhcC--CCHHHHHHHHHHHHHhhcChhhHHHHHH-cCCHHHHHH
Q 047123 261 MPLKEKAAIGVEAITTDPENAWAISAYG-GVSVLIEAFRS--GTALTQSHAVGAIRNIAAVEDIKAALAE-EGAVPVLVQ 336 (579)
Q Consensus 261 ~~v~~~aa~~L~~Ls~~~~~~~~i~~~g-~i~~Lv~ll~~--~~~~~~~~a~~aL~nLs~~~~~~~~l~~-~g~v~~Lv~ 336 (579)
+-.+..|.+++.++...++.+..+-..+ .-..+++++++ ++.++|.+++-+++-++.+++..+.+-. -..+..++.
T Consensus 163 ~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~ 242 (432)
T COG5231 163 FLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIA 242 (432)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 3367888999999998888777665443 55677888876 5778999999999999998876632221 124556666
Q ss_pred HhcCC-CHHHHHHHHHHHHHHhcCCh-hhHHHHHhcC-cHHHHHHhhccCCCChHHHHHHHHH---H----HHcccc---
Q 047123 337 SLTSS-SNLAQENAADCIATLAASGE-YFRLLIIQER-GLQRLMHLIQDSTSSIVTVENALLA---I----SSLSLS--- 403 (579)
Q Consensus 337 lL~~~-~~~v~~~a~~~L~~La~~~~-~~r~~l~~~g-~i~~Lv~ll~~~~~~~~~~~~A~~a---L----~~L~~~--- 403 (579)
+++.. .+.+...++..+.|++...+ ..-..+.-.| +.++.-.+++.+-++++++...-+. | ..+|..
T Consensus 243 iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y 322 (432)
T COG5231 243 IVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNY 322 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 66544 35688889999999987331 2222222233 3333333444443323333222111 1 011110
Q ss_pred ----------------------hhHHHHHhhcCcHHHHHHHHHhcCCHH-HHHHHHHHHHHhc-CChhhHHHHHHH--HH
Q 047123 404 ----------------------DSAARILSSTTSFIIQLGEFIKRGNVL-LQQVSSSLLGNLS-ISDGNKRAVASC--MG 457 (579)
Q Consensus 404 ----------------------~~~~~l~~~~~g~i~~L~~lL~~~~~~-v~~~A~~aL~~L~-~~~~~~~~i~~~--v~ 457 (579)
.+...+...+...+..|.++++...+. .-.-|+.=+..+. ..|+.+..+... =.
T Consensus 323 ~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~ 402 (432)
T COG5231 323 LNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKE 402 (432)
T ss_pred HHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHH
Confidence 345555555556788899999877665 2234455555555 788888877776 56
Q ss_pred HHHHhccCCCCHhHHHHHHHHHHHhhc
Q 047123 458 SLIKLMECPKPVGLQEAATDAVLSLLT 484 (579)
Q Consensus 458 ~Lv~lL~~~~~~~v~~~a~~aL~~L~~ 484 (579)
.++.++ ++++++|+..|..|+..+..
T Consensus 403 ~im~L~-nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 403 IIMNLI-NHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHh-cCCCchhhHHHHHHHHHHHh
Confidence 778899 88889999999999887654
No 127
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.86 E-value=0.0077 Score=61.78 Aligned_cols=298 Identities=15% Similarity=0.091 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhcc-----ChhhHHHHHhcCCHH
Q 047123 176 VEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSA-----NDESRKIVFEEGGLG 250 (579)
Q Consensus 176 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~-----~~~~~~~i~~~g~l~ 250 (579)
..+|.+|+..|..++..-.-.+... ......+..-+. ...+.+++.++.++..+... .|+..+.-...|.+-
T Consensus 269 s~~rle~~qvl~~~a~~~~~~~~~~--~~l~RvI~~~~~-~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw 345 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFSMTQAYL--MELGRVICKCMG-EADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFW 345 (728)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHccCC-CCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHH
Confidence 3577888888777653211111111 111111222234 56799999999999888651 222222222222111
Q ss_pred HHH------H-HHccCCHHHHHHHHHHHHHhcCCC----cc-HHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhc
Q 047123 251 PLL------R-ILETGSMPLKEKAAIGVEAITTDP----EN-AWAISAYGGVSVLIEAFRS-GTALTQSHAVGAIRNIAA 317 (579)
Q Consensus 251 ~Lv------~-lL~~~~~~v~~~aa~~L~~Ls~~~----~~-~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLs~ 317 (579)
... . .-++..+..+...|.++.++...+ +| +.. .......-|.+ ++.-++..|.+++.-+..
T Consensus 346 ~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T-----~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVL 420 (728)
T KOG4535|consen 346 TMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQT-----LCITFLLGCNDSKNRLVKAAASRALGVYVL 420 (728)
T ss_pred HHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchh-----hhHHHHhcccchHHHHHHHHHHhhceeEEe
Confidence 110 0 112223456778888888887311 11 110 11112222222 222344555555544445
Q ss_pred ChhhHHHHH-HcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc----CChh---hHHHHHhcCcHHHHHHh-hccCCCChH
Q 047123 318 VEDIKAALA-EEGAVPVLVQSLTSSSNLAQENAADCIATLAA----SGEY---FRLLIIQERGLQRLMHL-IQDSTSSIV 388 (579)
Q Consensus 318 ~~~~~~~l~-~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~----~~~~---~r~~l~~~g~i~~Lv~l-l~~~~~~~~ 388 (579)
++..+.... -..+...+...+.+..-..++++.+++.|++. .-++ ..+.+... .+..+++. ...+..+++
T Consensus 421 Hp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~~~~~A~~~~Ad~dk 499 (728)
T KOG4535|consen 421 HPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLKMLRSAIEASADKDK 499 (728)
T ss_pred ccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHHHHHHHHHhhhhhhh
Confidence 655544332 33445555556666667899999999999863 1122 11222111 12233332 233334468
Q ss_pred HHHHHHHHHHHcccc-h----hHHHHHhhcCcHHHHHH-HHHhcCCHHHHHHHHHHHHHhcCChhhH--H-HHHHH-HHH
Q 047123 389 TVENALLAISSLSLS-D----SAARILSSTTSFIIQLG-EFIKRGNVLLQQVSSSLLGNLSISDGNK--R-AVASC-MGS 458 (579)
Q Consensus 389 ~~~~A~~aL~~L~~~-~----~~~~l~~~~~g~i~~L~-~lL~~~~~~v~~~A~~aL~~L~~~~~~~--~-~i~~~-v~~ 458 (579)
++.+++++|.|+... + .....+.. +.+..+. ...-.+...||=+++.++.||-.|+... . ..... .+.
T Consensus 500 V~~navraLgnllQvlq~i~~~~~~e~~~--~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~ 577 (728)
T KOG4535|consen 500 VKSNAVRALGNLLQFLQPIEKPTFAEIIE--ESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNA 577 (728)
T ss_pred hhhHHHHHHhhHHHHHHHhhhccHHHHHH--HHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHH
Confidence 999999999999865 2 11122222 2333222 2234567789999999999999776542 1 11122 788
Q ss_pred HHHhccCCCCHhHHHHHHHHHHHhhc
Q 047123 459 LIKLMECPKPVGLQEAATDAVLSLLT 484 (579)
Q Consensus 459 Lv~lL~~~~~~~v~~~a~~aL~~L~~ 484 (579)
|..++.+.++..+|..|+.+|.--..
T Consensus 578 L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 578 LTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred HHHHHHHhccceEeehhhhhhcCCCC
Confidence 88888788899999999999877554
No 128
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.81 E-value=0.21 Score=53.87 Aligned_cols=297 Identities=17% Similarity=0.142 Sum_probs=150.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHh
Q 047123 166 DIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFE 245 (579)
Q Consensus 166 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~ 245 (579)
.++...+ |+...+.-|...|....+.-|+... .++..++.|.+ +.+..+|..|++.|-.+|.++++....+
T Consensus 27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcE-Ded~~iR~~aik~lp~~ck~~~~~v~kv-- 97 (556)
T PF05918_consen 27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCE-DEDVQIRKQAIKGLPQLCKDNPEHVSKV-- 97 (556)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-HHHH--
T ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHh-cccHHHHHHHHHhHHHHHHhHHHHHhHH--
Confidence 3344434 6888999999999988887777643 46888999999 9999999999999999999667777666
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhc---CCCHHHHHHHHHHHHHhhc---C
Q 047123 246 EGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFR---SGTALTQSHAVGAIRNIAA---V 318 (579)
Q Consensus 246 ~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~---~~~~~~~~~a~~aL~nLs~---~ 318 (579)
...|+++|.+.++.....+-.+|..|-. ++ .+.+..++..+. .++..+++.++..|..-.. .
T Consensus 98 ---aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~--------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 98 ---ADVLVQLLQTDDPVELDAVKNSLMSLLKQDP--------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp ---HHHHHHHTT---HHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred ---HHHHHHHHhcccHHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcH
Confidence 6789999998887767777777766653 22 245567777665 5788889998887743221 1
Q ss_pred hhhH-HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc----CChhhHHHHHhcCcHHHHHHhhc--cC-C-CChHH
Q 047123 319 EDIK-AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA----SGEYFRLLIIQERGLQRLMHLIQ--DS-T-SSIVT 389 (579)
Q Consensus 319 ~~~~-~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~----~~~~~r~~l~~~g~i~~Lv~ll~--~~-~-~~~~~ 389 (579)
+... ..=.+.-++..+-..|.+-+..=-.....+|..+-. .....+..+ ++.+....+ .. + .+++.
T Consensus 167 ~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~sD~e~ 241 (556)
T PF05918_consen 167 ELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPSDPES 241 (556)
T ss_dssp TTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SSSHHH
T ss_pred HHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCcCHHH
Confidence 1111 011111233344455655443333444455555544 122222222 222222211 11 1 11122
Q ss_pred HHHHHHHHH-Hc---ccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcC---ChhhHHHHHHH-HHHHHH
Q 047123 390 VENALLAIS-SL---SLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI---SDGNKRAVASC-MGSLIK 461 (579)
Q Consensus 390 ~~~A~~aL~-~L---~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~---~~~~~~~i~~~-v~~Lv~ 461 (579)
...-..++. ++ +....-..++.. +...++..+..-+.+.|..-+.++..++. ..+ ...+.+. ...|..
T Consensus 242 Idrli~C~~~Alp~fs~~v~Sskfv~y---~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ 317 (556)
T PF05918_consen 242 IDRLISCLRQALPFFSRGVSSSKFVNY---MCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKK 317 (556)
T ss_dssp HHHHHHHHHHHGGG-BTTB--HHHHHH---HHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHhcCCCChHHHHHH---HHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHH
Confidence 222222211 22 222222223222 22222222233355777788888888882 223 3333344 455555
Q ss_pred hccCCC------CHhHHHHHHHHHHHhhcCCcchhHH
Q 047123 462 LMECPK------PVGLQEAATDAVLSLLTVRSNRKEL 492 (579)
Q Consensus 462 lL~~~~------~~~v~~~a~~aL~~L~~~~~~~~~~ 492 (579)
.+ ..+ .....|+...++..|+...++...+
T Consensus 318 ym-P~~~~~~~l~fs~vEcLL~afh~La~k~p~~~~~ 353 (556)
T PF05918_consen 318 YM-PSKKTEPKLQFSYVECLLYAFHQLARKSPNSLNF 353 (556)
T ss_dssp TS-----------HHHHHHHHHHHHHHHTT-THHHH-
T ss_pred hC-CCCCCCCcccchHhhHHHHHHHHHhhhCcchhhh
Confidence 44 211 3355788888889998877664433
No 129
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.74 E-value=0.048 Score=48.59 Aligned_cols=138 Identities=12% Similarity=0.139 Sum_probs=101.5
Q ss_pred HHHHHhhcCcHHHHHHHHHhcCCH------HHHHHHHHHHHHhcCChh-hHHHHHHH-HHHHHHhccC-CCCHhHHHHHH
Q 047123 406 AARILSSTTSFIIQLGEFIKRGNV------LLQQVSSSLLGNLSISDG-NKRAVASC-MGSLIKLMEC-PKPVGLQEAAT 476 (579)
Q Consensus 406 ~~~l~~~~~g~i~~L~~lL~~~~~------~v~~~A~~aL~~L~~~~~-~~~~i~~~-v~~Lv~lL~~-~~~~~v~~~a~ 476 (579)
...++.. +++..|+.+++++.. +....++.++.+|-.+.- .-+.+-.. +...+..+.. ..+..+...|.
T Consensus 4 A~EFI~~--~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 4 AQEFISR--DGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred HHHHHhc--cCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence 3456777 999999999998873 666778888888873322 22233333 6666666632 23688999999
Q ss_pred HHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHH
Q 047123 477 DAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHL 546 (579)
Q Consensus 477 ~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L 546 (579)
..|-+++..++..-..+.++--++.|+..|...++. .+.++++.+..|....+.+.|+.|.+.=.-+++
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~-iq~naiaLinAL~~kA~~~~r~~i~~~l~~k~~ 150 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQE-IQTNAIALINALFLKADDSKRKEIAETLSQKQI 150 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHH-HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 999999998888677776788899999999998777 889999989888877665567766654333333
No 130
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.43 Score=56.03 Aligned_cols=322 Identities=13% Similarity=0.062 Sum_probs=173.3
Q ss_pred hhCcHHHHHHhhccCC-CHHHHHHHHHHHHHhhccChhhHHHHH--hcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC
Q 047123 202 KEGNVGYLISLLDFHH-QSSIREQAVLALSIIVSANDESRKIVF--EEGGLGPLLRILETGSMPLKEKAAIGVEAITTDP 278 (579)
Q Consensus 202 ~~g~v~~Lv~LL~~~~-~~~~~~~A~~aL~~La~~~~~~~~~i~--~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~ 278 (579)
+.+.|-.+++|-+ +. .-.-+..|+.-++.|+. . .++.+. -...||.|.++=-+++..+|.....+=..|..++
T Consensus 954 qPdLVYKFM~LAn-h~A~wnSk~GaAfGf~~i~~-~--a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~ 1029 (1702)
T KOG0915|consen 954 QPDLVYKFMQLAN-HNATWNSKKGAAFGFGAIAK-Q--AGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDS 1029 (1702)
T ss_pred ChHHHHHHHHHhh-hhchhhcccchhhchHHHHH-H--HHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccCh
Confidence 3444555555555 32 24456667777777776 2 222222 1246888888877888888887666666677765
Q ss_pred ccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhh---HHHHHHcCCHHHHHHHhcCCCHHHHHH---HHHH
Q 047123 279 ENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDI---KAALAEEGAVPVLVQSLTSSSNLAQEN---AADC 352 (579)
Q Consensus 279 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~---~~~l~~~g~v~~Lv~lL~~~~~~v~~~---a~~~ 352 (579)
.....-.-..++.-|+.-|.+....+|+.+|.+|..|-...+. .+.+-+ ....+.+.+++-.+.+|+. ++.+
T Consensus 1030 k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpe--lw~~~fRvmDDIKEsVR~aa~~~~~~ 1107 (1702)
T KOG0915|consen 1030 KKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPE--LWEAAFRVMDDIKESVREAADKAARA 1107 (1702)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444566778888888888999999999999999874332 333322 3344455555444455554 5566
Q ss_pred HHHHhcC--Ch-h-hHHHHHhcCcHHHHHH--hhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHH
Q 047123 353 IATLAAS--GE-Y-FRLLIIQERGLQRLMH--LIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFI 424 (579)
Q Consensus 353 L~~La~~--~~-~-~r~~l~~~g~i~~Lv~--ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL 424 (579)
|..++.. +. + .+..-.-...+|.|+. .+ +.- .+++..+...+..|+.. ........ ..++.|++..
T Consensus 1108 lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v--~evr~~si~tl~dl~Kssg~~lkP~~~---~LIp~ll~~~ 1181 (1702)
T KOG0915|consen 1108 LSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SKV--NEVRRFSIGTLMDLAKSSGKELKPHFP---KLIPLLLNAY 1181 (1702)
T ss_pred HHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cch--HHHHHHHHHHHHHHHHhchhhhcchhh---HHHHHHHHHc
Confidence 6666521 11 0 0100011223344433 12 222 37888888888888876 22222222 3566666665
Q ss_pred hcCCHHHH-----------HHHHHHHHH-hcCChhhHHHHHHH------------HHHHHHhccCCCCHhHHHHHHHHHH
Q 047123 425 KRGNVLLQ-----------QVSSSLLGN-LSISDGNKRAVASC------------MGSLIKLMECPKPVGLQEAATDAVL 480 (579)
Q Consensus 425 ~~~~~~v~-----------~~A~~aL~~-L~~~~~~~~~i~~~------------v~~Lv~lL~~~~~~~v~~~a~~aL~ 480 (579)
..-.+.|- .+|...++. .+.+....+.+..+ +|.+.++++.+-....+..++..+.
T Consensus 1182 s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~ 1261 (1702)
T KOG0915|consen 1182 SELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFIS 1261 (1702)
T ss_pred cccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHH
Confidence 54444332 222222221 12222222222221 7777777766666667777887777
Q ss_pred HhhcC-CcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHH
Q 047123 481 SLLTV-RSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLV 538 (579)
Q Consensus 481 ~L~~~-~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~ 538 (579)
-|+.. ....+-+. +.-+..+.....++++. ++++-..+...|+...+++-.+.++
T Consensus 1262 ~L~~r~~~emtP~s--gKll~al~~g~~dRNes-v~kafAsAmG~L~k~Ss~dq~qKLi 1317 (1702)
T KOG0915|consen 1262 LLVQRLGSEMTPYS--GKLLRALFPGAKDRNES-VRKAFASAMGYLAKFSSPDQMQKLI 1317 (1702)
T ss_pred HHHHHhccccCcch--hHHHHHHhhccccccHH-HHHHHHHHHHHHHhcCChHHHHHHH
Confidence 77642 11111111 22334555556666666 4554444455555444332334443
No 131
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.68 E-value=0.2 Score=50.65 Aligned_cols=196 Identities=21% Similarity=0.200 Sum_probs=122.8
Q ss_pred hhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHH--hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc
Q 047123 157 KQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVA--KEGNVGYLISLLDFHHQSSIREQAVLALSIIVS 234 (579)
Q Consensus 157 ~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~--~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~ 234 (579)
.+.....+...+..+.......|..++..|..+....... ..+. ....+..+.+.++ .+..+.+..|++++..++-
T Consensus 38 ~~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lk-kg~~~E~~lA~~~l~Ll~l 115 (309)
T PF05004_consen 38 QEDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLK-KGKSEEQALAARALALLAL 115 (309)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHhh
Confidence 3444445778888888888999999999999998654322 2332 3456788888888 7777777888888888776
Q ss_pred c--ChhhHHHHHhcCCHHHHHHHHccCC--HHHHHHHHHHHHHhcC----CCccHHHHHhcCcHHHHHH--Hhc-C----
Q 047123 235 A--NDESRKIVFEEGGLGPLLRILETGS--MPLKEKAAIGVEAITT----DPENAWAISAYGGVSVLIE--AFR-S---- 299 (579)
Q Consensus 235 ~--~~~~~~~i~~~g~l~~Lv~lL~~~~--~~v~~~aa~~L~~Ls~----~~~~~~~i~~~g~i~~Lv~--ll~-~---- 299 (579)
. .......++ ....|+|.+++.+++ ..++..++.+|.-++. +++..... ...+..++. ..+ +
T Consensus 116 tlg~g~~~~ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~--~~~le~if~~~~~~~~~~~~ 192 (309)
T PF05004_consen 116 TLGAGEDSEEIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEEL--MESLESIFLLSILKSDGNAP 192 (309)
T ss_pred hcCCCccHHHHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHH--HHHHHHHHHHHhcCcCCCcc
Confidence 2 123333443 356888999998764 4566667767766652 22222111 112221111 111 1
Q ss_pred -----CCHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047123 300 -----GTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLA 357 (579)
Q Consensus 300 -----~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La 357 (579)
+++.+...|+.+-.-|.. .+.....-.-...+|.|+.+|.+.+.+||..|-.+|+-+-
T Consensus 193 ~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 193 VVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred cccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 124566666666555543 3332222222346899999999999999999999988764
No 132
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=1.8 Score=49.42 Aligned_cols=312 Identities=17% Similarity=0.136 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChh
Q 047123 159 DLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDE 238 (579)
Q Consensus 159 ~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~ 238 (579)
.+.+.+..|+..|.+.+..+|..|+..++.+....|... ...+|...+.++.+..++..-..|+-+|..++. -.-
T Consensus 338 ivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~L----ad~vi~svid~~~p~e~~~aWHgacLaLAELA~-rGl 412 (1133)
T KOG1943|consen 338 IVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPEL----ADQVIGSVIDLFNPAEDDSAWHGACLALAELAL-RGL 412 (1133)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHH----HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh-cCC
Confidence 456778888899999999999999999999998887332 234466666666523346677789999999988 111
Q ss_pred hHHHHHhcCCHHHHHHHHccC--------CHHHHHHHHHHHHHhcC-CCcc-HHHHHhcCcHHH-HHHHhcCCCHHHHHH
Q 047123 239 SRKIVFEEGGLGPLLRILETG--------SMPLKEKAAIGVEAITT-DPEN-AWAISAYGGVSV-LIEAFRSGTALTQSH 307 (579)
Q Consensus 239 ~~~~i~~~g~l~~Lv~lL~~~--------~~~v~~~aa~~L~~Ls~-~~~~-~~~i~~~g~i~~-Lv~ll~~~~~~~~~~ 307 (579)
...... ..++|.+++.|... ...+|..||.+++.++. +... -.-+. ...... |+..+=+.+..++..
T Consensus 413 Llps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l-~~L~s~LL~~AlFDrevncRRA 490 (1133)
T KOG1943|consen 413 LLPSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL-QSLASALLIVALFDREVNCRRA 490 (1133)
T ss_pred cchHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH-HHHHHHHHHHHhcCchhhHhHH
Confidence 110000 12344555555432 45689999999999984 2221 11111 111122 223333556678888
Q ss_pred HHHHHHHhhcC----h----------------------hhHHHHHH-cCCHHHHHHHh-----cCCCHHHHHHHHHHHHH
Q 047123 308 AVGAIRNIAAV----E----------------------DIKAALAE-EGAVPVLVQSL-----TSSSNLAQENAADCIAT 355 (579)
Q Consensus 308 a~~aL~nLs~~----~----------------------~~~~~l~~-~g~v~~Lv~lL-----~~~~~~v~~~a~~~L~~ 355 (579)
|..++.....- | +.+..+.+ .|....+++-+ .+-+..+++.++++|.+
T Consensus 491 AsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~ 570 (1133)
T KOG1943|consen 491 ASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHK 570 (1133)
T ss_pred HHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 88888544321 1 01222222 33444444433 34588999999999999
Q ss_pred HhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc----h-hHHHHHhhc-Cc---HHHHHHHH-Hh
Q 047123 356 LAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS----D-SAARILSST-TS---FIIQLGEF-IK 425 (579)
Q Consensus 356 La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~----~-~~~~l~~~~-~g---~i~~L~~l-L~ 425 (579)
|+...+ .....+.++.++....+.+. ..+....-+...+... . ....+.+.. .| .++.+... +.
T Consensus 571 Ls~~~p----k~~a~~~L~~lld~~ls~~~--~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~ 644 (1133)
T KOG1943|consen 571 LSLTEP----KYLADYVLPPLLDSTLSKDA--SMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFY 644 (1133)
T ss_pred HHHhhH----HhhcccchhhhhhhhcCCCh--HHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhc
Confidence 886433 34556778888887766654 4555444444433332 1 111111110 01 11111111 11
Q ss_pred cC-CHHHHHHHHHHHHHhc-CChhhHH-HHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123 426 RG-NVLLQQVSSSLLGNLS-ISDGNKR-AVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTV 485 (579)
Q Consensus 426 ~~-~~~v~~~A~~aL~~L~-~~~~~~~-~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~ 485 (579)
.+ ..-.+......+..++ ..+.... .+.+. -..+.+.+ .. +..+|..+..++..++..
T Consensus 645 rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l-~~-~n~i~~~av~av~~l~s~ 706 (1133)
T KOG1943|consen 645 RGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNL-TL-PNQIRDAAVSAVSDLVST 706 (1133)
T ss_pred cchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhh-cc-hHHHHHHHHHHHHHHHHH
Confidence 12 1334455667777777 4444333 44444 33333333 22 337888888888888753
No 133
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.65 E-value=0.011 Score=48.59 Aligned_cols=68 Identities=19% Similarity=0.339 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhcc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhc
Q 047123 179 KKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDF-HHQSSIREQAVLALSIIVSANDESRKIVFEE 246 (579)
Q Consensus 179 ~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~-~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~ 246 (579)
|...++.|++++..++.++..+.+.|++|.++..... ..+|-++|.|..+|.+|+..++++++.+.+-
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 5677889999999999999999999999999986431 5579999999999999999889998887653
No 134
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.63 E-value=0.0031 Score=45.80 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHh
Q 047123 219 SSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAI 274 (579)
Q Consensus 219 ~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~L 274 (579)
+.+|..|+.+|++++...++.... ....+++.|+..|++++..|+..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999998733333333 4467899999999999999999999999875
No 135
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.56 E-value=0.31 Score=47.05 Aligned_cols=204 Identities=14% Similarity=0.146 Sum_probs=127.3
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHh-cCCHHHHHHHHccC---------CH---HHHHHHHHHHHHhcCCCccHHHH
Q 047123 218 QSSIREQAVLALSIIVSANDESRKIVFE-EGGLGPLLRILETG---------SM---PLKEKAAIGVEAITTDPENAWAI 284 (579)
Q Consensus 218 ~~~~~~~A~~aL~~La~~~~~~~~~i~~-~g~l~~Lv~lL~~~---------~~---~v~~~aa~~L~~Ls~~~~~~~~i 284 (579)
+++.|+.|+.-|+.--+..++....+-. -|.+..|++=+-+- +. .-..+|...|..++.+++.+..|
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 5788998877766655434444444443 37676666554331 12 22345666677888999999999
Q ss_pred HhcCcHHHHHHHhcCCC-----HHHHHHHHHHHHHhhc--ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047123 285 SAYGGVSVLIEAFRSGT-----ALTQSHAVGAIRNIAA--VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLA 357 (579)
Q Consensus 285 ~~~g~i~~Lv~ll~~~~-----~~~~~~a~~aL~nLs~--~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La 357 (579)
.+....-.|..+++..+ +.++-.+++++..+.. +.+.-..+.+...+|..++.+..+++-.+..|...+..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99998777777776432 3578889999999987 4556677778899999999999999999999999988887
Q ss_pred cCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHH
Q 047123 358 ASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSS 437 (579)
Q Consensus 358 ~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~ 437 (579)
.++.. +.-+ ..+ .+--.....+|.+ .+..+.+..++.+-....+
T Consensus 168 ~dd~G----------L~yi---C~t----~eRf~av~~vL~~-------------------mV~~l~~~pS~RLLKhIIr 211 (262)
T PF04078_consen 168 LDDVG----------LNYI---CQT----AERFFAVAMVLNK-------------------MVEQLVKQPSPRLLKHIIR 211 (262)
T ss_dssp HSHHH----------HHHH---TSS----HHHHHHHHHHHHH-------------------HHHHHHHS--HHHHHHHHH
T ss_pred cchhH----------HHHH---hcC----HHHHHHHHHHHHH-------------------HHHHHccCCChhHHHHHHH
Confidence 65432 1110 000 0111111111111 1122345566677777778
Q ss_pred HHHHhcCChhhHHHHHHHHH
Q 047123 438 LLGNLSISDGNKRAVASCMG 457 (579)
Q Consensus 438 aL~~L~~~~~~~~~i~~~v~ 457 (579)
+-.+|+.++..+.++...+|
T Consensus 212 CYlRLsdnprar~aL~~~LP 231 (262)
T PF04078_consen 212 CYLRLSDNPRAREALRQCLP 231 (262)
T ss_dssp HHHHHTTSTTHHHHHHHHS-
T ss_pred HHHHHccCHHHHHHHHHhCc
Confidence 88888888888887777643
No 136
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.3 Score=53.25 Aligned_cols=291 Identities=11% Similarity=0.086 Sum_probs=147.1
Q ss_pred hHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccCh
Q 047123 158 QDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAND 237 (579)
Q Consensus 158 ~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~ 237 (579)
|-...++|...+.|.+.+.-+|+.|.-++..+-+..+. + -.++-..+-.+|....|+....+|.-.|... ++
T Consensus 130 ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~----L-~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~---D~ 201 (948)
T KOG1058|consen 130 ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH----L-IPDAPELIESFLLTEQDPSCKRNAFLMLFTT---DP 201 (948)
T ss_pred HHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh----h-cCChHHHHHHHHHhccCchhHHHHHHHHHhc---CH
Confidence 44456788888899999999999999888877543211 1 1222223333443256677777764443332 22
Q ss_pred hhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 047123 238 ESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIA 316 (579)
Q Consensus 238 ~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs 316 (579)
+..-..... -+.-..+-+...+......+...+. ++.-+. ..++.+..+|.+.++.+...|+++|.+|+
T Consensus 202 ErAl~Yl~~-----~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~-----~~i~~i~~lL~stssaV~fEaa~tlv~lS 271 (948)
T KOG1058|consen 202 ERALNYLLS-----NIDQIPSFNDSLQLVIVELIRKVCLANPAEKA-----RYIRCIYNLLSSTSSAVIFEAAGTLVTLS 271 (948)
T ss_pred HHHHHHHHh-----hHhhccCccHHHHHHHHHHHHHHHhcCHHHhh-----HHHHHHHHHHhcCCchhhhhhcceEEEcc
Confidence 222111110 0111111123333333333333332 111111 12234444444433333333333333333
Q ss_pred cChh------------------hHHHHH---------------HcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh
Q 047123 317 AVED------------------IKAALA---------------EEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF 363 (579)
Q Consensus 317 ~~~~------------------~~~~l~---------------~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~ 363 (579)
..+. |...++ -+|.+--++++|++.+-+++.+++.....|..+.
T Consensus 272 ~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr--- 348 (948)
T KOG1058|consen 272 NDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR--- 348 (948)
T ss_pred CCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc---
Confidence 3221 111111 0122233344555556666666666555555432
Q ss_pred HHHHHhcCcHHHHHHhh-----ccCC----CChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHH
Q 047123 364 RLLIIQERGLQRLMHLI-----QDST----SSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQ 433 (579)
Q Consensus 364 r~~l~~~g~i~~Lv~ll-----~~~~----~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~ 433 (579)
-+..++.++ ++++ ...+.|..-..++..++.. +... + .+++.|++.+.+.++..-.
T Consensus 349 --------Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~a----a--tvV~~ll~fisD~N~~aas 414 (948)
T KOG1058|consen 349 --------NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVA----A--TVVSLLLDFISDSNEAAAS 414 (948)
T ss_pred --------cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHH----H--HHHHHHHHHhccCCHHHHH
Confidence 233333333 2222 1235577777888877765 3222 2 5778899999888887776
Q ss_pred HHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCc
Q 047123 434 VSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVRS 487 (579)
Q Consensus 434 ~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~ 487 (579)
.....+...- ..|..|..+.+. ++.+-.+ .+..+...+++.++..+....
T Consensus 415 ~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~i----rS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 415 DVLMFVREAIEKFPNLRASIIEKLLETFPQI----RSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHhhhhh----cccccchhHHHHHHHHHhhhH
Confidence 6677777666 777777776665 3333222 355677788888887776544
No 137
>PRK14707 hypothetical protein; Provisional
Probab=96.55 E-value=2.4 Score=51.74 Aligned_cols=377 Identities=12% Similarity=0.062 Sum_probs=193.8
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHH-hhccCCCHHHHHHHHHHHH-HhhccChhhHHHHHhcCCHHHH
Q 047123 175 GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLIS-LLDFHHQSSIREQAVLALS-IIVSANDESRKIVFEEGGLGPL 252 (579)
Q Consensus 175 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~-LL~~~~~~~~~~~A~~aL~-~La~~~~~~~~~i~~~g~l~~L 252 (579)
+..+...|+..|..-...+++.++.+-..| |...++ +-+ .++..+-..|+..|. .+.. +++.++.+-..|+-..|
T Consensus 345 d~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~-~a~~lNalsK-Wp~~~~c~~aa~~LA~~l~~-d~~l~~~~~~Q~van~l 421 (2710)
T PRK14707 345 DNPVCAAAVSALAERLVADPELRKDLEPQG-VSSVLNALSK-WPDTPVCAAAASALAEHVVD-DLELRKGLDPQGVSNAL 421 (2710)
T ss_pred CchhHHHHHHHHHHHhccCHhhhcccchhH-HHHHHhhhhc-CCCchHHHHHHHHHHHHhcc-ChhhhhhcchhhHHHHH
Confidence 444555666666666666767666665555 444444 545 676555556666655 6666 88888888776744444
Q ss_pred HHHHccCCHHHHHHHHHHHH-HhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHH-HHHHHHHHHhhcChhhHHHHHHcCC
Q 047123 253 LRILETGSMPLKEKAAIGVE-AITTDPENAWAISAYGGVSVLIEAFRSGTALTQ-SHAVGAIRNIAAVEDIKAALAEEGA 330 (579)
Q Consensus 253 v~lL~~~~~~v~~~aa~~L~-~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~-~~a~~aL~nLs~~~~~~~~l~~~g~ 330 (579)
-.+-+=++..+...++..|. .++.+.+.+..+--.++...|-.+-+=.|..+- ..+-.....|+...+.++.|--.++
T Consensus 422 nalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~ 501 (2710)
T PRK14707 422 NALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEV 501 (2710)
T ss_pred HHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHH
Confidence 44444467777777777776 466777777777655544443333333444444 4444444566666666655544333
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhh-ccCCCChHHHHHHHHHHHHcccc-hhHHH
Q 047123 331 VPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLI-QDSTSSIVTVENALLAISSLSLS-DSAAR 408 (579)
Q Consensus 331 v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll-~~~~~~~~~~~~A~~aL~~L~~~-~~~~~ 408 (579)
...|-.+-+-.+......++..|..-...+......+...+ +..+++-+ +.... ..-+.++..|..+... .....
T Consensus 502 ~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~~~~-~~~~lnalSKwp~s--~~C~~A~~~iA~~l~~~~~~~~ 578 (2710)
T PRK14707 502 VIALHSLSKWPDTPICAEAASALAERVVDELQLRKAFDAHQ-VVNTLKALSKWPDK--QLCAVAASGLAERLADEPQLPK 578 (2710)
T ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHhccchhhhhhhhhHH-HHHHHHhhhcCCch--hHHHHHHHHHHHHhhcchhhHH
Confidence 33332222334433333333333322222222222222222 23333333 32222 4445555555554333 22223
Q ss_pred HHhhcCcHHHHHHHHHhcC--CHHHHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123 409 ILSSTTSFIIQLGEFIKRG--NVLLQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTV 485 (579)
Q Consensus 409 l~~~~~g~i~~L~~lL~~~--~~~v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~ 485 (579)
-+.. .-+..+++.|+.. ....+..+.++-..+...++.+..+... +..+++-|.+-.....++.++..|..-...
T Consensus 579 ~L~a--q~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~~~~lr~~l~~q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~ 656 (2710)
T PRK14707 579 DLHR--QGVVIVLNALSKWPDTAVCAEAVNALAERLVDEPDLRKELDPVDVTNVLNALSKWPGTEVCAEVARLLAGRLVG 656 (2710)
T ss_pred hhhh--hHHHHHHHhhccCCCcHHHHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhhcCCCchHHHHHHHHHHHHhhh
Confidence 3333 4567777777654 3445555555555565777777776666 888888774444444455555544433222
Q ss_pred CcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHH-HHHhCCCChhHHHHHHHcCchHHHHhhhccC-CchHHHHHH
Q 047123 486 RSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVT-AAVLGGGSNGCRKRLVAAGAYQHLQKLAETE-VPGAKKVLQ 562 (579)
Q Consensus 486 ~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L-~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~-~~~ak~~~~ 562 (579)
......-+ ....|..+++-|..=.+...-..++..| ..|+.... .|..+-..++...|-.|.+-. .+..+++..
T Consensus 657 ~~~l~~~f-naQ~vAn~LNALSKWPe~e~Cr~Aa~~LA~rLa~~~~--Lr~al~pQ~vAN~LNALSKWP~~~~Cr~AA~ 732 (2710)
T PRK14707 657 DRLLRKTF-NSLDVANALNALSKWPDTPVCAAAAGGMAERLAADPG--LRKELNPVDVANALNALSKWPRTPVCAAVAS 732 (2710)
T ss_pred chhhHhhc-chHHHHHHHHhhhcCCCchHHHHHHHHHHHHHhcChh--hHhhcCHHHHHHHHhhhhcCCCcHHHHHHHH
Confidence 22222222 2455666776665332222333333333 44555444 566655555555555566554 334444443
No 138
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.55 E-value=0.12 Score=56.76 Aligned_cols=237 Identities=18% Similarity=0.123 Sum_probs=156.5
Q ss_pred ChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHH-HhcCCCccHHHHHhcCcHHHHHHHhcCCCH-HHHHHHHHHHH
Q 047123 236 NDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVE-AITTDPENAWAISAYGGVSVLIEAFRSGTA-LTQSHAVGAIR 313 (579)
Q Consensus 236 ~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~-~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~ 313 (579)
...-+...++.|++..|+++.....+..+.....+|. .+....+-. ...++.+.+.+..... .-...++.+++
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~-----~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS-----YEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch-----hhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 5556777889999999999999988888888888888 443211111 2244555555543221 23456788899
Q ss_pred Hhhc-ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-cCcHHHHHHhhccCCCChHHHH
Q 047123 314 NIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQ-ERGLQRLMHLIQDSTSSIVTVE 391 (579)
Q Consensus 314 nLs~-~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~-~g~i~~Lv~ll~~~~~~~~~~~ 391 (579)
||++ ++..|..+..+-+++.+-.++...++..|..++.++.||..++--+.+.+++ ...++.....+..... ....
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E--~~~l 645 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADE--KFEL 645 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhh--HHhh
Confidence 9988 4556777888888887777788889999999999999999876555666666 4455665556665433 5666
Q ss_pred HHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccCC
Q 047123 392 NALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMECP 466 (579)
Q Consensus 392 ~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~ 466 (579)
.+++++..+... ..+.. ...-..+...+..++.+++.++|......+.|+. ...+....+... ++.+...- ..
T Consensus 646 A~a~a~a~I~sv~~n~c~~-~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~-~~ 723 (748)
T KOG4151|consen 646 AGAGALAAITSVVENHCSR-ILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQ-KL 723 (748)
T ss_pred hccccccchhhcchhhhhh-HHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHH-Hh
Confidence 666666655554 23332 2221246677888899999999999988888865 444555555554 44444433 22
Q ss_pred CCHhHHHHHHHHHHH
Q 047123 467 KPVGLQEAATDAVLS 481 (579)
Q Consensus 467 ~~~~v~~~a~~aL~~ 481 (579)
+....++.+..+|..
T Consensus 724 ~~a~~~~~~~~~l~~ 738 (748)
T KOG4151|consen 724 NRAPKREDAAPCLSA 738 (748)
T ss_pred hhhhhhhhhhhHHHH
Confidence 344455555555544
No 139
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.54 E-value=0.75 Score=52.09 Aligned_cols=240 Identities=15% Similarity=0.204 Sum_probs=144.1
Q ss_pred HHhhCcHHHHHHhhccCC-----CHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcc----CC----HHHHHH
Q 047123 200 VAKEGNVGYLISLLDFHH-----QSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILET----GS----MPLKEK 266 (579)
Q Consensus 200 i~~~g~v~~Lv~LL~~~~-----~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~----~~----~~v~~~ 266 (579)
+.+.|++..|+.++. +- ....-...+..|...+. -+.+|+.+++.|+++.|+..|.. +. .++-+.
T Consensus 113 ~~~~gGL~~ll~~l~-~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~ 190 (802)
T PF13764_consen 113 LAECGGLEVLLSRLD-SIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQ 190 (802)
T ss_pred hhcCCCHHHHHHHHH-hhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence 446899999999987 42 23455556677777777 89999999999999999998852 23 566676
Q ss_pred HHHHHHHhcCCCc-----cHHHHHh--------cCcHHHHHHHhcC----CCHHHHHHHHHHHHHhhcChhhH-HHHHHc
Q 047123 267 AAIGVEAITTDPE-----NAWAISA--------YGGVSVLIEAFRS----GTALTQSHAVGAIRNIAAVEDIK-AALAEE 328 (579)
Q Consensus 267 aa~~L~~Ls~~~~-----~~~~i~~--------~g~i~~Lv~ll~~----~~~~~~~~a~~aL~nLs~~~~~~-~~l~~~ 328 (579)
...++..|..... .-..... ..-+..+++.+.+ .++.+....+++|-+|+...+.+ +.+++.
T Consensus 191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~ 270 (802)
T PF13764_consen 191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH 270 (802)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Confidence 6666666652111 1111111 1136677776665 35788889999999998854443 333331
Q ss_pred CCHHHHHHH--hcC-CCHHHHHHHHHHHHHHhcC------ChhhHHHHHhcCcHHHHHHhhccCCC------ChH-----
Q 047123 329 GAVPVLVQS--LTS-SSNLAQENAADCIATLAAS------GEYFRLLIIQERGLQRLMHLIQDSTS------SIV----- 388 (579)
Q Consensus 329 g~v~~Lv~l--L~~-~~~~v~~~a~~~L~~La~~------~~~~r~~l~~~g~i~~Lv~ll~~~~~------~~~----- 388 (579)
+.+.+++ +.. ..++- ..-+.+++.++.+ ....|..+++.|++...++++..+.+ +++
T Consensus 271 --F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l 347 (802)
T PF13764_consen 271 --FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFL 347 (802)
T ss_pred --HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHh
Confidence 1221111 111 11111 2335666666532 13578999999999999888865543 122
Q ss_pred ---HHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCC--HHHHHHHHHHHHHhcCChh
Q 047123 389 ---TVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGN--VLLQQVSSSLLGNLSISDG 447 (579)
Q Consensus 389 ---~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~--~~v~~~A~~aL~~L~~~~~ 447 (579)
....+++.|..|+.+ ...+..+.. +++ .+++.|+.-. ..+=..|-.+|-.|..+++
T Consensus 348 ~~psLp~iL~lL~GLa~gh~~tQ~~~~~--~~l-~~lH~LEqvss~~~IGslAEnlLeal~~~~~ 409 (802)
T PF13764_consen 348 SRPSLPYILRLLRGLARGHEPTQLLIAE--QLL-PLLHRLEQVSSEEHIGSLAENLLEALAENED 409 (802)
T ss_pred cCCcHHHHHHHHHHHHhcCHHHHHHHHh--hHH-HHHHHhhcCCCccchHHHHHHHHHHHhcChh
Confidence 234577888888887 445555655 666 6666665432 3333444444555554444
No 140
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.53 E-value=0.47 Score=50.24 Aligned_cols=181 Identities=15% Similarity=0.093 Sum_probs=101.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHc
Q 047123 249 LGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEE 328 (579)
Q Consensus 249 l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~ 328 (579)
.|-|-..|++.-..+...++++++.++... ....+. ...+..|-.+|.+.....|..|.+.|..|+.....+-..+.
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~n-v~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN- 342 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEEN-VGSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN- 342 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhc-cCHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC-
Confidence 445555666655678888999999888522 111111 23557777888888889999999999999873322211111
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHH
Q 047123 329 GAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAA 407 (579)
Q Consensus 329 g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~ 407 (579)
+.+-.++.+.+..+-..|+.+|..-.. ++.. ...+..+..++.+-++ .-+..+..+++.||.. +...
T Consensus 343 ---~evEsLIsd~Nr~IstyAITtLLKTGt-~e~i------drLv~~I~sfvhD~SD--~FKiI~ida~rsLsl~Fp~k~ 410 (898)
T COG5240 343 ---KEVESLISDENRTISTYAITTLLKTGT-EETI------DRLVNLIPSFVHDMSD--GFKIIAIDALRSLSLLFPSKK 410 (898)
T ss_pred ---hhHHHHhhcccccchHHHHHHHHHcCc-hhhH------HHHHHHHHHHHHhhcc--CceEEeHHHHHHHHhhCcHHH
Confidence 223345556665666666666554222 1111 1122333333444343 5677788888888876 3322
Q ss_pred HHHhhcCcHHHHHHHH-HhcCCHHHHHHHHHHHHHhc-CChhhHH
Q 047123 408 RILSSTTSFIIQLGEF-IKRGNVLLQQVSSSLLGNLS-ISDGNKR 450 (579)
Q Consensus 408 ~l~~~~~g~i~~L~~l-L~~~~~~v~~~A~~aL~~L~-~~~~~~~ 450 (579)
.. .+.-|... ++.|..+.+..+..++..+. ..|+.++
T Consensus 411 ~s------~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE 449 (898)
T COG5240 411 LS------YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE 449 (898)
T ss_pred HH------HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH
Confidence 21 12222222 34566677777777777666 4444443
No 141
>PRK14707 hypothetical protein; Provisional
Probab=96.50 E-value=3.2 Score=50.85 Aligned_cols=380 Identities=15% Similarity=0.100 Sum_probs=194.4
Q ss_pred CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHH-hhccCCCHHHHHHHHHH-HHHhhccChhhHHHHHhcCCHHH
Q 047123 174 GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLIS-LLDFHHQSSIREQAVLA-LSIIVSANDESRKIVFEEGGLGP 251 (579)
Q Consensus 174 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~-LL~~~~~~~~~~~A~~a-L~~La~~~~~~~~~i~~~g~l~~ 251 (579)
.+..+...|+..|..-..++++.++.+-..+ +...++ |-+ .++..+-..|+.+ -..++. +++.++.+-..| +..
T Consensus 302 pd~~vc~~Aa~~la~rl~~d~~l~~~~~~~~-~~~~LNalsK-Wpd~~~C~~Aa~~LA~rl~~-d~~l~~~l~~q~-~a~ 377 (2710)
T PRK14707 302 ADLPVCAEAAIALAERLADDPELCKALNARG-LSTALNALSK-WPDNPVCAAAVSALAERLVA-DPELRKDLEPQG-VSS 377 (2710)
T ss_pred CCchHHHHHHHHHHHHHhccHhhhhccchHH-HHHHHHHhhc-CCCchhHHHHHHHHHHHhcc-CHhhhcccchhH-HHH
Confidence 3555566666666666666666665544444 444444 445 6664444444444 447777 888887776555 555
Q ss_pred HHHHHcc-CCHHHHHHHHHHHH-HhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHH-HHhhcChhhHHHHHHc
Q 047123 252 LLRILET-GSMPLKEKAAIGVE-AITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAI-RNIAAVEDIKAALAEE 328 (579)
Q Consensus 252 Lv~lL~~-~~~~v~~~aa~~L~-~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL-~nLs~~~~~~~~l~~~ 328 (579)
.+..|.. ++..+...++..|. .+..+++.+..+-..|+-..|-.+.+=.+..+-..++..| ..++.+.+.+..|--.
T Consensus 378 ~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~ 457 (2710)
T PRK14707 378 VLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPI 457 (2710)
T ss_pred HHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChH
Confidence 5666654 55556666666665 5777888888887777766555566556665555555555 4555566666655433
Q ss_pred CCHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHH
Q 047123 329 GAVPVLVQSL-TSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAA 407 (579)
Q Consensus 329 g~v~~Lv~lL-~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~ 407 (579)
+ |...++.+ +-.+..+...++..|..-...++..+..+--.++...|-.+.+-.+. ....+.+.+.-..+.......
T Consensus 458 ~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~-~~c~~A~~~lA~rl~~~~~l~ 535 (2710)
T PRK14707 458 N-VTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDT-PICAEAASALAERVVDELQLR 535 (2710)
T ss_pred H-HHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCc-HHHHHHHHHHHHHhccchhhh
Confidence 3 33334444 33455566666666665444444444433333334444444443332 222223333333333222222
Q ss_pred HHHhhcCcHHHHHHHHHh-cCCHHHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhc
Q 047123 408 RILSSTTSFIIQLGEFIK-RGNVLLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLT 484 (579)
Q Consensus 408 ~l~~~~~g~i~~L~~lL~-~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~ 484 (579)
..+.. .-+..+++-|. ..+...-+.+...|..+. ..+..+..|... |..+++-|.+-.+......++..|.....
T Consensus 536 ~~~~~--~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~ 613 (2710)
T PRK14707 536 KAFDA--HQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALSKWPDTAVCAEAVNALAERLV 613 (2710)
T ss_pred hhhhh--HHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Confidence 22121 23344444443 333444455555555544 666777777665 99999988444443333333333433333
Q ss_pred CCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHH-HHhCCCChhHHHHHHHcCchHHHHhhhccCC-chHHHHHH
Q 047123 485 VRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTA-AVLGGGSNGCRKRLVAAGAYQHLQKLAETEV-PGAKKVLQ 562 (579)
Q Consensus 485 ~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~-~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~-~~ak~~~~ 562 (579)
..+....-+ +...+..+++-|..-......+.++..|. .+..... .+..|-..++.-.|-.|.+..+ +..+++++
T Consensus 614 ~~~~lr~~l-~~q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~--l~~~fnaQ~vAn~LNALSKWPe~e~Cr~Aa~ 690 (2710)
T PRK14707 614 DEPDLRKEL-DPVDVTNVLNALSKWPGTEVCAEVARLLAGRLVGDRL--LRKTFNSLDVANALNALSKWPDTPVCAAAAG 690 (2710)
T ss_pred cChhhhhhc-cHHHHHHHHhhhhcCCCchHHHHHHHHHHHHhhhchh--hHhhcchHHHHHHHHhhhcCCCchHHHHHHH
Confidence 333332222 34566666666633222213333333332 2333333 4445544444444445555543 34555555
Q ss_pred HH
Q 047123 563 RL 564 (579)
Q Consensus 563 ~l 564 (579)
.|
T Consensus 691 ~L 692 (2710)
T PRK14707 691 GM 692 (2710)
T ss_pred HH
Confidence 44
No 142
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.50 E-value=0.014 Score=47.91 Aligned_cols=59 Identities=17% Similarity=0.150 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc
Q 047123 345 AQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS 403 (579)
Q Consensus 345 v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~ 403 (579)
.+...+.+|+|++..++..+..+.+.|+++.+++....+..++.++++|..+|+||+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~ 60 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEG 60 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhC
Confidence 35678899999999999999999999999999998766665679999999999999998
No 143
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.43 E-value=0.44 Score=52.85 Aligned_cols=314 Identities=15% Similarity=0.123 Sum_probs=175.7
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhc------CcHH
Q 047123 218 QSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAY------GGVS 291 (579)
Q Consensus 218 ~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~------g~i~ 291 (579)
+....-.++..|+.|+. +......+++.|+|..|+.+=+ ..+.-.....+|..|+..+..-+.+..+ .++.
T Consensus 366 d~~l~~~~~k~~~~l~~-h~kfa~~fv~~~gi~kll~vpr--~s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~ 442 (1516)
T KOG1832|consen 366 DSPLLPDVMKLICALAA-HRKFAAMFVERRGILKLLAVPR--VSETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVK 442 (1516)
T ss_pred cccccHHHHHHHHHHHH-hhHHHHHHHHhhhhHHHhcCCC--chhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHH
Confidence 34455567888888888 8888899999998877665532 1222344456777777766655555442 2444
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcC--------C-----------CHHHHHHHHHH
Q 047123 292 VLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTS--------S-----------SNLAQENAADC 352 (579)
Q Consensus 292 ~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~--------~-----------~~~v~~~a~~~ 352 (579)
.-+.++.......+.++.......-.....-+.+-....+..|+.+++. . +..+..+.|.+
T Consensus 443 ~~~~l~~cs~~~~~~~~~~ff~~~f~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~a 522 (1516)
T KOG1832|consen 443 LAIELLDCSQDQARKNSALFFAAAFVFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFA 522 (1516)
T ss_pred HHHHHHhcchhhccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHH
Confidence 4445555443333333332221111122222233334455555555531 1 12334445555
Q ss_pred HHHH-----hcCChhhHHHHHhcCcHHHHHHhhccCC-C---ChHHHHHHHHHHHHcccc---------hhHHHHHhhcC
Q 047123 353 IATL-----AASGEYFRLLIIQERGLQRLMHLIQDST-S---SIVTVENALLAISSLSLS---------DSAARILSSTT 414 (579)
Q Consensus 353 L~~L-----a~~~~~~r~~l~~~g~i~~Lv~ll~~~~-~---~~~~~~~A~~aL~~L~~~---------~~~~~l~~~~~ 414 (579)
|..- ...-+.++..-++.|++...+.-+.... + +.+..+..++-+..+... +..+.++..
T Consensus 523 lR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkl-- 600 (1516)
T KOG1832|consen 523 LRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKL-- 600 (1516)
T ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHh--
Confidence 5442 1112233444445555554444332222 1 112233333322222221 456667777
Q ss_pred cHHHHHHHHHhcC--------CHHHHHHHHHHHHHhcCChhhHHHHHHH----------HHHHHHhc--cCC-CCHhHHH
Q 047123 415 SFIIQLGEFIKRG--------NVLLQQVSSSLLGNLSISDGNKRAVASC----------MGSLIKLM--ECP-KPVGLQE 473 (579)
Q Consensus 415 g~i~~L~~lL~~~--------~~~v~~~A~~aL~~L~~~~~~~~~i~~~----------v~~Lv~lL--~~~-~~~~v~~ 473 (579)
+++..++++.... -.+....|...|+-+..-|+.+..+..+ +..++..- +.. -+++++.
T Consensus 601 s~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~ 680 (1516)
T KOG1832|consen 601 SGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQ 680 (1516)
T ss_pred HHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHH
Confidence 8888888886532 2356667777777777888999888877 22233222 111 2789999
Q ss_pred HHHHHHHHhhcCCc-chh----------------------------------HHHhhcccHHHHHhhcCCCchhh----h
Q 047123 474 AATDAVLSLLTVRS-NRK----------------------------------ELVRDEKSVMRLMQMLDPKNEAL----N 514 (579)
Q Consensus 474 ~a~~aL~~L~~~~~-~~~----------------------------------~~~~~~~~i~~Lv~lL~~~~~~~----~ 514 (579)
.|..++.|+...++ ++. ..++.+.||..|++||.-..+.+ +
T Consensus 681 ~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~I 760 (1516)
T KOG1832|consen 681 PALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCI 760 (1516)
T ss_pred HHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHH
Confidence 99999999976652 221 12445789999999997655432 7
Q ss_pred hHHHHHHHHHHhCCCChhHHHHHH
Q 047123 515 KKFPVMVTAAVLGGGSNGCRKRLV 538 (579)
Q Consensus 515 k~~av~~L~~L~~~~~~~~r~~i~ 538 (579)
+..|..+|..|+.++. .|+.|.
T Consensus 761 RalAc~~L~GLaR~~t--VrQIlt 782 (1516)
T KOG1832|consen 761 RALACRVLLGLARDDT--VRQILT 782 (1516)
T ss_pred HHHHHHHHhccccCcH--HHHHHH
Confidence 7888888999988776 666553
No 144
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.42 E-value=0.5 Score=44.87 Aligned_cols=148 Identities=12% Similarity=0.134 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcC-----CCHHHHHHHHHHHHHHhcCC-hhhHHHHHhcCcHHHHHH
Q 047123 305 QSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTS-----SSNLAQENAADCIATLAASG-EYFRLLIIQERGLQRLMH 378 (579)
Q Consensus 305 ~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~-----~~~~v~~~a~~~L~~La~~~-~~~r~~l~~~g~i~~Lv~ 378 (579)
..++...|..++++++.|..+.+...---+..+|.. ..+-++-.++++++.|...+ .+.-..+...++++..++
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 457777788889999999999988766556666643 34679999999999998644 345566778999999999
Q ss_pred hhccCCCChHHHHHHHHHHHHcccc--------hhHHHHHhhcCcHHH-HHHHHHhcCCHHHHHHHHHHHHHhcCChhhH
Q 047123 379 LIQDSTSSIVTVENALLAISSLSLS--------DSAARILSSTTSFII-QLGEFIKRGNVLLQQVSSSLLGNLSISDGNK 449 (579)
Q Consensus 379 ll~~~~~~~~~~~~A~~aL~~L~~~--------~~~~~l~~~~~g~i~-~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~ 449 (579)
.++.++. ..+..|..++..+-.. ...+++-.- ...+. .+.++.+.+++.+-....+...+|+.++..|
T Consensus 176 ime~GSe--lSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av-~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar 252 (293)
T KOG3036|consen 176 IMESGSE--LSKTVATFILQKILLDDVGLYYICQTAERFSAV-ALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR 252 (293)
T ss_pred HHhcccH--HHHHHHHHHHHHHhhccccHHHHHHhHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 9999986 7888888888877654 111221111 01222 3445556778888899999999999999999
Q ss_pred HHHHHH
Q 047123 450 RAVASC 455 (579)
Q Consensus 450 ~~i~~~ 455 (579)
..+..+
T Consensus 253 ~aL~~c 258 (293)
T KOG3036|consen 253 AALRSC 258 (293)
T ss_pred HHHHhh
Confidence 888887
No 145
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.33 E-value=0.17 Score=45.12 Aligned_cols=119 Identities=16% Similarity=0.174 Sum_probs=98.0
Q ss_pred HHHHHhcCCHHHHHHHHccCC------HHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCC--CHHHHHHHHHH
Q 047123 240 RKIVFEEGGLGPLLRILETGS------MPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSG--TALTQSHAVGA 311 (579)
Q Consensus 240 ~~~i~~~g~l~~Lv~lL~~~~------~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~a~~a 311 (579)
...++..||+..|+++++++. .+....+..++..|-.+....|.......|...+...... +..+...+...
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 356778899999999999986 3667778888888888777789888889999999988864 57889999999
Q ss_pred HHHhhcChhh-HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123 312 IRNIAAVEDI-KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA 358 (579)
Q Consensus 312 L~nLs~~~~~-~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~ 358 (579)
|-++..+... ...+.++=-++.|+..|+..+++++.+++..+-.|-.
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 9999886555 4455566678999999999999999999998888753
No 146
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.32 E-value=0.6 Score=47.22 Aligned_cols=187 Identities=18% Similarity=0.175 Sum_probs=112.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHH--HcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--ChhhHHH
Q 047123 291 SVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALA--EEGAVPVLVQSLTSSSNLAQENAADCIATLAAS--GEYFRLL 366 (579)
Q Consensus 291 ~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~--~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~--~~~~r~~ 366 (579)
...+..+.+.....|+.++..+.++.........+. ....++.+.+.++.+...-+..|+.++.-++.. .......
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 344445555667888999988888765333323222 123567777788777766666777777776643 1111233
Q ss_pred HHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-----hhHHHHHhhcCcHHHHHHH--HHhc-C---------CH
Q 047123 367 IIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-----DSAARILSSTTSFIIQLGE--FIKR-G---------NV 429 (579)
Q Consensus 367 l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-----~~~~~l~~~~~g~i~~L~~--lL~~-~---------~~ 429 (579)
+.+ ...+.|.+.+.+++.....+..++.+|.-+++. +.....++ .+..+.. ..+. + ++
T Consensus 126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~----~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME----SLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH----HHHHHHHHHhcCcCCCcccccCCCcc
Confidence 333 456788888887765456777888788877764 12221111 1221111 1221 1 24
Q ss_pred HHHHHHHHHHHHhc--CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhh
Q 047123 430 LLQQVSSSLLGNLS--ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLL 483 (579)
Q Consensus 430 ~v~~~A~~aL~~L~--~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~ 483 (579)
.+...|+.+-.-|. ..+.......+. ++.|..+| ++.+.+||..|.++|.-|.
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL-~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELL-DSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Confidence 56777776666555 333222244444 99999999 8889999999999988764
No 147
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.29 E-value=0.6 Score=52.08 Aligned_cols=245 Identities=13% Similarity=0.058 Sum_probs=153.8
Q ss_pred CHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHH
Q 047123 260 SMPLKEKAAIGVEAITTD-PENAWAISAYGGVSVLIEAFR-SGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQS 337 (579)
Q Consensus 260 ~~~v~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~l 337 (579)
.+..-..+.+++...+.. ..+...+. -.+...+..+. +..+.++..|+.+++..+...-.. -...++++.|+++
T Consensus 463 ~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~--~~~p~ild~L~ql 538 (1005)
T KOG2274|consen 463 SPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLL--SLQPMILDGLLQL 538 (1005)
T ss_pred CHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCceecc--ccchHHHHHHHHH
Confidence 455445677777766532 11211110 01122233222 344556667777666655321111 1134567778888
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcH
Q 047123 338 LTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARILSSTTSF 416 (579)
Q Consensus 338 L~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~ 416 (579)
....+.++.....++|...+..|+. .....+....|..+.++-..+.++.+...+-.++..++.. .+...+.+ ..
T Consensus 539 as~~s~evl~llmE~Ls~vv~~dpe-f~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e---~~ 614 (1005)
T KOG2274|consen 539 ASKSSDEVLVLLMEALSSVVKLDPE-FAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE---RL 614 (1005)
T ss_pred cccccHHHHHHHHHHHHHHhccChh-hhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH---HH
Confidence 8778889999999999999998876 3444456667777776655554457777777777777776 44455555 48
Q ss_pred HHHHHHHHhcCC----HHHHHHHHHHHHHhc--CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcch
Q 047123 417 IIQLGEFIKRGN----VLLQQVSSSLLGNLS--ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNR 489 (579)
Q Consensus 417 i~~L~~lL~~~~----~~v~~~A~~aL~~L~--~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~ 489 (579)
++.++..+.... ......+...|..+. ..+..-+.+... .|.+.+..=++++.+.-..+.++|..+.......
T Consensus 615 iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq 694 (1005)
T KOG2274|consen 615 IPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQ 694 (1005)
T ss_pred HHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHH
Confidence 999999997665 667777777777665 333455544444 8888885547888889999999999998765443
Q ss_pred hHHHhhcccHH------HHHhhcCCCchh
Q 047123 490 KELVRDEKSVM------RLMQMLDPKNEA 512 (579)
Q Consensus 490 ~~~~~~~~~i~------~Lv~lL~~~~~~ 512 (579)
.....++.|.. .+-+||++...+
T Consensus 695 ~~t~~~e~g~~~~yImqV~sqLLdp~~sd 723 (1005)
T KOG2274|consen 695 LLTWHDEPGHNLWYIMQVLSQLLDPETSD 723 (1005)
T ss_pred HHhhccCCCccHHHHHHHHHHHcCCccch
Confidence 33333444444 344677777655
No 148
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=1.2 Score=50.77 Aligned_cols=254 Identities=13% Similarity=0.119 Sum_probs=144.2
Q ss_pred hCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccH
Q 047123 203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETG-SMPLKEKAAIGVEAITTDPENA 281 (579)
Q Consensus 203 ~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~aa~~L~~Ls~~~~~~ 281 (579)
++++..|+..|+ +.+..++-.|+..++.++...| ..+ ...++...+.++.-. +...-..++-+|+.|+...-..
T Consensus 340 E~vie~Lls~l~-d~dt~VrWSaAKg~grvt~rlp---~~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 340 EFVIEHLLSALS-DTDTVVRWSAAKGLGRVTSRLP---PEL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHHhcc-CCcchhhHHHHHHHHHHHccCc---HHH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence 466778888888 8899999999999999988455 222 233566666655443 4677889999999998421100
Q ss_pred HHHHhcCcHHHHHHHhcCC--------CHHHHHHHHHHHHHhhcChhh--HHHHHHcCCHHHHHHHhcCCCHHHHHHHHH
Q 047123 282 WAISAYGGVSVLIEAFRSG--------TALTQSHAVGAIRNIAAVEDI--KAALAEEGAVPVLVQSLTSSSNLAQENAAD 351 (579)
Q Consensus 282 ~~i~~~g~i~~Lv~ll~~~--------~~~~~~~a~~aL~nLs~~~~~--~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~ 351 (579)
.... ..+++.++..|..+ ...++..|+++++.++...+. -+.+.+.=.-..|+..+-+.+-..+..|..
T Consensus 415 ps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 415 PSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred hHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 0000 12456666665532 236899999999999773221 111222111122333456667788888888
Q ss_pred HHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHH-----Hhc
Q 047123 352 CIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEF-----IKR 426 (579)
Q Consensus 352 ~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~l-----L~~ 426 (579)
++........+. .-|++.+ ...+..+- ..+.++-..+ |.. +..-.|...++++- +.+
T Consensus 494 AlqE~VGR~~n~------p~Gi~Li-s~~dy~sV--~~rsNcy~~l---~~~------ia~~~~y~~~~f~~L~t~Kv~H 555 (1133)
T KOG1943|consen 494 ALQENVGRQGNF------PHGISLI-STIDYFSV--TNRSNCYLDL---CVS------IAEFSGYREPVFNHLLTKKVCH 555 (1133)
T ss_pred HHHHHhccCCCC------CCchhhh-hhcchhhh--hhhhhHHHHH---hHH------HHhhhhHHHHHHHHHHhccccc
Confidence 877655432221 1122221 11111111 2222222211 111 11011334443333 456
Q ss_pred CCHHHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhc
Q 047123 427 GNVLLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLT 484 (579)
Q Consensus 427 ~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~ 484 (579)
.+..+++.++.+|.+|+ ..++. +... .++++... .+.+...|..+.-+.+.+..
T Consensus 556 Wd~~irelaa~aL~~Ls~~~pk~---~a~~~L~~lld~~-ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 556 WDVKIRELAAYALHKLSLTEPKY---LADYVLPPLLDST-LSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHh---hcccchhhhhhhh-cCCChHHhhhhHHHHHHHHH
Confidence 78999999999999998 44432 2222 77777777 67778888766666666543
No 149
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.11 E-value=0.27 Score=51.13 Aligned_cols=221 Identities=13% Similarity=0.084 Sum_probs=136.3
Q ss_pred HHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc--CCCccH--------HHHHhcCcHHHH
Q 047123 224 QAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAIT--TDPENA--------WAISAYGGVSVL 293 (579)
Q Consensus 224 ~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls--~~~~~~--------~~i~~~g~i~~L 293 (579)
.|++.|-.+....+..-..+.+.+|+..++..++..-..+.+. .-..+-. ..++.. -...+.+.++.|
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~l 80 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSL 80 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCcccccccccccCHHHHHHHHHH
Confidence 4566677666646667778888999999999986532222111 0000000 001111 111222333333
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhc-Ch---hhHHHHHH-cCCHHHHHHHhcCC---CHHHHHHHHHHHHHHhcCChhhHH
Q 047123 294 IEAFRSGTALTQSHAVGAIRNIAA-VE---DIKAALAE-EGAVPVLVQSLTSS---SNLAQENAADCIATLAASGEYFRL 365 (579)
Q Consensus 294 v~ll~~~~~~~~~~a~~aL~nLs~-~~---~~~~~l~~-~g~v~~Lv~lL~~~---~~~v~~~a~~~L~~La~~~~~~r~ 365 (579)
++++. .+.. .. +.-..+.+ ......|...+.+. .+.+-..++..+..+...+|..-.
T Consensus 81 Lk~l~---------------~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~ 145 (379)
T PF06025_consen 81 LKFLS---------------HAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFS 145 (379)
T ss_pred HHHHH---------------HHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhH
Confidence 33322 2222 11 11222334 33444555556543 467889999999999998988888
Q ss_pred HHHhcCcHHHHHHhhc-cCC-CChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCH-------HHHHHH
Q 047123 366 LIIQERGLQRLMHLIQ-DST-SSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNV-------LLQQVS 435 (579)
Q Consensus 366 ~l~~~g~i~~Lv~ll~-~~~-~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~-------~v~~~A 435 (579)
.+.+.|.++.+++.+. .+- ++.++....-.+|..||-+ ...+.+.+. +.+..+++++.+.+. +.-..-
T Consensus 146 ~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~--~~l~~~f~if~s~~~~~~l~~~d~a~~l 223 (379)
T PF06025_consen 146 ILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSS--NPLDKLFEIFTSPDYVKALRRRDTASNL 223 (379)
T ss_pred HHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhc--ChHHHHHHHhCCHHHHHHhcccchHHHH
Confidence 8999999999999887 443 3456777777889999988 777888888 999999999865433 223333
Q ss_pred HHHHHHhc-CChhhHHHHHHH----HHHHHHhc
Q 047123 436 SSLLGNLS-ISDGNKRAVASC----MGSLIKLM 463 (579)
Q Consensus 436 ~~aL~~L~-~~~~~~~~i~~~----v~~Lv~lL 463 (579)
...+-.|. ++|..|..+.++ +..+..+-
T Consensus 224 G~~~DEL~RH~p~Lk~~i~~~ii~~l~~l~~~g 256 (379)
T PF06025_consen 224 GNSFDELMRHHPSLKPDIIDAIIKILDRLVELG 256 (379)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777 889999988888 44444444
No 150
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.06 E-value=0.29 Score=53.90 Aligned_cols=209 Identities=16% Similarity=0.099 Sum_probs=140.3
Q ss_pred hhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHH-HhhccChhhHHHHHhcCCHHHHHHHHccCC-HHHHHHHHHHHH
Q 047123 195 KSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALS-IIVSANDESRKIVFEEGGLGPLLRILETGS-MPLKEKAAIGVE 272 (579)
Q Consensus 195 ~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~-~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~-~~v~~~aa~~L~ 272 (579)
.-+...++.|+...|+.+.. ...+........+|. .+.. +..+. ..+++++...+.... ..-...+..++.
T Consensus 495 ~~~~~~Ik~~~~~aLlrl~~-~q~e~akl~~~~aL~~~i~f--~~~~~----~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 495 YERAKKIKPGGYEALLRLGQ-QQFEEAKLKWYHALAGKIDF--PGERS----YEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred HhcCccccccHHHHHHHHHH-HhchHHHHHHHHHHhhhcCC--CCCch----hhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 33455678999999999887 666677777777776 3333 11111 134566666655432 112345677888
Q ss_pred HhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHH-HHH-cCCHHHHHHHhcCCCHHHHHHH
Q 047123 273 AITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAA-LAE-EGAVPVLVQSLTSSSNLAQENA 349 (579)
Q Consensus 273 ~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~-l~~-~g~v~~Lv~lL~~~~~~v~~~a 349 (579)
||+. +...+..+.+.-+++.+-+++..+++..|..+...+.||..++..-.. +++ ....+....++....+.....+
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 8886 445677788877777777778888999999999999999998765443 444 4466666666666666777777
Q ss_pred HHHHHHHhcCChhhHH-HHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhh
Q 047123 350 ADCIATLAASGEYFRL-LIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSS 412 (579)
Q Consensus 350 ~~~L~~La~~~~~~r~-~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~ 412 (579)
+..+..++..+++.+. ...-......++.++.+.+. +++......+.|+... +....+...
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~--~~qhrgl~~~ln~~~~~~ei~~~~~~~ 711 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDD--EIQHRGLVIILNLFEALFEIAEKIFET 711 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchh--hhhhhhhhhhhhHHHHHHHHHHHhccc
Confidence 7777767665655555 33335566777888888776 8888888888885544 444444444
No 151
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.03 E-value=0.15 Score=56.65 Aligned_cols=142 Identities=18% Similarity=0.213 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh
Q 047123 160 LVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDES 239 (579)
Q Consensus 160 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~ 239 (579)
+..+.++.+....+.|.+.++-.-.-|...++.+|+-... +++.+.+=++ ++++.+|-.|++.++.+-. ++.
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----avNti~kDl~-d~N~~iR~~AlR~ls~l~~--~el 124 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AVNTIQKDLQ-DPNEEIRGFALRTLSLLRV--KEL 124 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HHHHHHhhcc-CCCHHHHHHHHHHHHhcCh--HHH
Confidence 4457778888888888888888877888888777633222 3677777778 9999999999999888755 122
Q ss_pred HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 047123 240 RKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIA 316 (579)
Q Consensus 240 ~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs 316 (579)
. ...++++.+.+.++++.||..|+-++.++=. -....+.+.|.+..+..++.+.++.+..+|..+|..+-
T Consensus 125 ~-----~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 125 L-----GNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred H-----HHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 2 2358899999999999999999999999863 22345666788888899999999999999999988764
No 152
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.00 E-value=0.85 Score=52.51 Aligned_cols=294 Identities=13% Similarity=0.085 Sum_probs=160.6
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC----CC-cc
Q 047123 206 VGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT----DP-EN 280 (579)
Q Consensus 206 v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~----~~-~~ 280 (579)
++.+..-+..-.....+..|+..|..++. .-.....+ ..++|-++.++.+....||..|..+|..+-. -+ .+
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~-~i~de~~L--DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELST-YIDDEVKL--DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhh-hcchHHHH--hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 44444444312246777888888888886 32222222 3568999999999999999999999888652 12 22
Q ss_pred HHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 047123 281 AWAISAYGGVSVLIEAFRS-GTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAAS 359 (579)
Q Consensus 281 ~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~ 359 (579)
...| ..=..|.|-.++.+ ....++..-+.+|..|+... -.+.+.+--.....++++.+.+ ...+ ...
T Consensus 501 aniF-~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA---~rFle~~q~~~~~g~~n~~nse-------t~~~-~~~ 568 (1431)
T KOG1240|consen 501 ANIF-PEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA---YRFLELTQELRQAGMLNDPNSE-------TAPE-QNY 568 (1431)
T ss_pred chhh-HhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH---HHHHHHHHHHHhcccccCcccc-------cccc-ccc
Confidence 2222 22345667677766 34455655566666655421 1111111000011112221111 0000 000
Q ss_pred ChhhHHHHHhcCcHHHHH-HhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHH
Q 047123 360 GEYFRLLIIQERGLQRLM-HLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSL 438 (579)
Q Consensus 360 ~~~~r~~l~~~g~i~~Lv-~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~a 438 (579)
+.. ...+ ...++.++ .++.+..+ -++..-+..|.-||..-.+..- +.-.+..|+.+|+..+..+|-.--.-
T Consensus 569 ~~~-~~~L--~~~V~~~v~sLlsd~~~--~Vkr~Lle~i~~LC~FFGk~ks---ND~iLshLiTfLNDkDw~LR~aFfds 640 (1431)
T KOG1240|consen 569 NTE-LQAL--HHTVEQMVSSLLSDSPP--IVKRALLESIIPLCVFFGKEKS---NDVILSHLITFLNDKDWRLRGAFFDS 640 (1431)
T ss_pred chH-HHHH--HHHHHHHHHHHHcCCch--HHHHHHHHHHHHHHHHhhhccc---ccchHHHHHHHhcCccHHHHHHHHhh
Confidence 100 1111 11233333 34444333 5666666777777765100000 00356789999999888777655555
Q ss_pred HHHhcCChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHH
Q 047123 439 LGNLSISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKF 517 (579)
Q Consensus 439 L~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~ 517 (579)
|.-++..-.- +..-+. +|.|.+-| .+...-|...|.++|..|+...--++..+. ..+....-+|-.++.- ++..
T Consensus 641 I~gvsi~VG~-rs~seyllPLl~Q~l-tD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~W-IR~~ 715 (1431)
T KOG1240|consen 641 IVGVSIFVGW-RSVSEYLLPLLQQGL-TDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLW-IRRA 715 (1431)
T ss_pred ccceEEEEee-eeHHHHHHHHHHHhc-cCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHH-HHHH
Confidence 5544411111 112233 77777888 555678889999999999887655555552 3455566667777766 8888
Q ss_pred HHHHHHHHhC
Q 047123 518 PVMVTAAVLG 527 (579)
Q Consensus 518 av~~L~~L~~ 527 (579)
++.++...+.
T Consensus 716 ~~~iI~~~~~ 725 (1431)
T KOG1240|consen 716 VLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHHHh
Confidence 8888877664
No 153
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.99 E-value=0.46 Score=52.97 Aligned_cols=169 Identities=11% Similarity=0.117 Sum_probs=124.7
Q ss_pred hccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHH
Q 047123 171 LQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLG 250 (579)
Q Consensus 171 L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~ 250 (579)
+.+++...|.+|+..+...+..++..-. ..+-+++... +.|.+++.-.--.|...+..+| ....+ ++.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dmss------Lf~dViK~~~-trd~ElKrL~ylYl~~yak~~P-~~~lL----avN 95 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMSS------LFPDVIKNVA-TRDVELKRLLYLYLERYAKLKP-ELALL----AVN 95 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChHH------HHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCH-HHHHH----HHH
Confidence 5666777788888777666554433221 2455666666 7788888888778888887444 11111 377
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCC
Q 047123 251 PLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGA 330 (579)
Q Consensus 251 ~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~ 330 (579)
.+.+=+.++++.+|..|.+++..|-...= -...++++.+++.++++.++..|+.|+.++-..+ +....+.|.
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~~~el------~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~~~g~ 167 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLRVKEL------LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYHELGL 167 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcChHHH------HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--HhhhhcccH
Confidence 78888889999999999999988753211 1235688889999999999999999999986532 233457788
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 047123 331 VPVLVQSLTSSSNLAQENAADCIATLAAS 359 (579)
Q Consensus 331 v~~Lv~lL~~~~~~v~~~a~~~L~~La~~ 359 (579)
+..+..++.+.++.+...|+.+|..+...
T Consensus 168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 168 IDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 88999999999999999999999988653
No 154
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.90 E-value=3 Score=46.81 Aligned_cols=178 Identities=12% Similarity=0.040 Sum_probs=118.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHh
Q 047123 259 GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSL 338 (579)
Q Consensus 259 ~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL 338 (579)
..+.++..|+++++.-+... ... -...+++..|.++....+.++......+|+.++..+.-.....+..+.|..+.++
T Consensus 503 ~~~~~ki~a~~~~~~~~~~~-vl~-~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF 580 (1005)
T KOG2274|consen 503 VPPPVKISAVRAFCGYCKVK-VLL-SLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLF 580 (1005)
T ss_pred CCCchhHHHHHHHHhccCce-ecc-ccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHH
Confidence 35567777777777766211 111 1124577788888877777888888888888888666566666777888888776
Q ss_pred --cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCC--ChHHHHHHHHHHHHcccc---hhHHHHHh
Q 047123 339 --TSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTS--SIVTVENALLAISSLSLS---DSAARILS 411 (579)
Q Consensus 339 --~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~--~~~~~~~A~~aL~~L~~~---~~~~~l~~ 411 (579)
.+.++.+...+-.++..++.... +..-..+..+|.+++.+..... .......+...|..+.++ +-.+.++.
T Consensus 581 ~k~s~DP~V~~~~qd~f~el~q~~~--~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~ 658 (1005)
T KOG2274|consen 581 LKYSEDPQVASLAQDLFEELLQIAA--NYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC 658 (1005)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHH--hhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH
Confidence 45567777777777666654111 1112235679999999876551 136677777777777766 44555666
Q ss_pred hcCcHHHHHHHH-HhcCCHHHHHHHHHHHHHhc
Q 047123 412 STTSFIIQLGEF-IKRGNVLLQQVSSSLLGNLS 443 (579)
Q Consensus 412 ~~~g~i~~L~~l-L~~~~~~v~~~A~~aL~~L~ 443 (579)
. +.+.+.+. +.+++.+.-+++..+|+.+-
T Consensus 659 ~---~FpaVak~tlHsdD~~tlQ~~~EcLra~I 688 (1005)
T KOG2274|consen 659 Y---AFPAVAKITLHSDDHETLQNATECLRALI 688 (1005)
T ss_pred H---HhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence 5 67777766 56777777788888877776
No 155
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.90 E-value=0.35 Score=46.88 Aligned_cols=96 Identities=11% Similarity=0.104 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhc-CCCccHHHHHhcCcHHHHHHHhc-CCCHHHHHHHHHHHHHhh-cChhhHHHHHHcCCHHHHHHHhc
Q 047123 263 LKEKAAIGVEAIT-TDPENAWAISAYGGVSVLIEAFR-SGTALTQSHAVGAIRNIA-AVEDIKAALAEEGAVPVLVQSLT 339 (579)
Q Consensus 263 v~~~aa~~L~~Ls-~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLs-~~~~~~~~l~~~g~v~~Lv~lL~ 339 (579)
....|.+.|..++ -+|+.+..+.+...+..|+.++. ...+.++.+++.+|..+. .++.|...+-+.+++..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 4566778888888 58899999999999999999995 467888999998886654 58899999999999999999997
Q ss_pred CC--CHHHHHHHHHHHHHHhc
Q 047123 340 SS--SNLAQENAADCIATLAA 358 (579)
Q Consensus 340 ~~--~~~v~~~a~~~L~~La~ 358 (579)
+. +.+++-++++.|.-...
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred cccccHHHhHHHHHHHHHHHc
Confidence 65 55788888888776544
No 156
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.88 E-value=0.12 Score=42.32 Aligned_cols=89 Identities=13% Similarity=0.181 Sum_probs=63.1
Q ss_pred HHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHhccC
Q 047123 390 VENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASCMGSLIKLMEC 465 (579)
Q Consensus 390 ~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~v~~Lv~lL~~ 465 (579)
|..+..+|...+.. ......++. +++.++..+.+.+..||..|+.+|.|++ ..++.-..|.+-.+.|.+++ .
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~---Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~-~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDE---ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLS-A 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHH---HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c
Confidence 34455566666555 344555554 8999999999999999999999999999 33444444555488999999 6
Q ss_pred CCCHhHHHHHHHHHHHhh
Q 047123 466 PKPVGLQEAATDAVLSLL 483 (579)
Q Consensus 466 ~~~~~v~~~a~~aL~~L~ 483 (579)
+.+..||..| +.|-+|.
T Consensus 79 D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRLL 95 (97)
T ss_pred CCchhHHHHH-HHHHHHh
Confidence 6677777665 5555543
No 157
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.71 Score=50.77 Aligned_cols=124 Identities=16% Similarity=0.131 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHH
Q 047123 344 LAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEF 423 (579)
Q Consensus 344 ~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~l 423 (579)
+-+...+.++..+...+++.| +.++..|..++.++. ....+.+.|.-|... ........ ..+..+.+.
T Consensus 407 e~K~aivd~Ii~iie~~pdsK-----e~~L~~LCefIEDce----~~~i~~rILhlLG~E-gP~a~~Ps--kyir~iyNR 474 (865)
T KOG1078|consen 407 EFKRAIVDAIIDIIEENPDSK-----ERGLEHLCEFIEDCE----FTQIAVRILHLLGKE-GPKAPNPS--KYIRFIYNR 474 (865)
T ss_pred hHHHHHHHHHHHHHHhCcchh-----hHHHHHHHHHHHhcc----chHHHHHHHHHHhcc-CCCCCCcc--hhhHHHhhh
Confidence 445555555555554444322 334555555555542 344455555555443 00001111 345555555
Q ss_pred HhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhh
Q 047123 424 IKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLL 483 (579)
Q Consensus 424 L~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~ 483 (579)
.--.+..++..|..+|.++. .++..+..+ .-.|.+.+ .+.+.++|+.|..+|.++-
T Consensus 475 viLEn~ivRaaAv~alaKfg~~~~~l~~sI---~vllkRc~-~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 475 VILENAIVRAAAVSALAKFGAQDVVLLPSI---LVLLKRCL-NDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhhhhHHHHHHHHHHHhcCCCCccccH---HHHHHHHh-cCchHHHHHHHHHHHHHhh
Confidence 55567788889999999998 454444332 22445567 7778999999999999886
No 158
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.71 E-value=0.94 Score=46.93 Aligned_cols=269 Identities=18% Similarity=0.266 Sum_probs=144.8
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHH-hcCCCccHHH
Q 047123 206 VGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETG-SMPLKEKAAIGVEA-ITTDPENAWA 283 (579)
Q Consensus 206 v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~aa~~L~~-Ls~~~~~~~~ 283 (579)
|..++.=+..+....+|..++--|+.-+. +++.+..+...|....+++.+... +..+-..++.++.. ++.+..+-..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 45555544413446788888888888889 999999999999999999999543 33355555445544 4444444445
Q ss_pred HHhcCcHHHHHHHhcCC---C--HHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhc---------CCCHHHHHHH
Q 047123 284 ISAYGGVSVLIEAFRSG---T--ALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLT---------SSSNLAQENA 349 (579)
Q Consensus 284 i~~~g~i~~Lv~ll~~~---~--~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~---------~~~~~v~~~a 349 (579)
+.+.+....++.++... + ......-. .+++.. .++.+..+...+. .....-+..+
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~---~~lsk~--------~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~la 170 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSDSSRK---KNLSKV--------QQKSRSLCKELLSSGSSWKSPKPPELSPQTLA 170 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchhhhhh---hhhhHH--------HHHHHHHHHHHHhccccccccCCcccccccHH
Confidence 44555666667777611 0 00000000 011110 0011111111110 0111233344
Q ss_pred HHHHHHHh--------------cCChhhHHHHHhcCcHHHHHHhhcc----CC-----C-----ChHHHHHHHHHHHHcc
Q 047123 350 ADCIATLA--------------ASGEYFRLLIIQERGLQRLMHLIQD----ST-----S-----SIVTVENALLAISSLS 401 (579)
Q Consensus 350 ~~~L~~La--------------~~~~~~r~~l~~~g~i~~Lv~ll~~----~~-----~-----~~~~~~~A~~aL~~L~ 401 (579)
..+|..++ ...+.+++.+.+.|+++.++..+.. .. . +...-..+.++|-+.+
T Consensus 171 ll~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T 250 (361)
T PF07814_consen 171 LLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVT 250 (361)
T ss_pred HHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHH
Confidence 44444442 1233467888889999999998752 11 0 1123445667777766
Q ss_pred cc--hhHHHHHhhcCcHHHHH-HHHHh---cCCHHHHHHHHHHHHHhc-CChhhHHHHHHH-----H----HHHHHhc--
Q 047123 402 LS--DSAARILSSTTSFIIQL-GEFIK---RGNVLLQQVSSSLLGNLS-ISDGNKRAVASC-----M----GSLIKLM-- 463 (579)
Q Consensus 402 ~~--~~~~~l~~~~~g~i~~L-~~lL~---~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-----v----~~Lv~lL-- 463 (579)
.. ++...++....+.+..+ ..++. ......+..+.+.+.|++ .+++..+.+... . ..+..++
T Consensus 251 ~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~ 330 (361)
T PF07814_consen 251 FLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSL 330 (361)
T ss_pred hcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccc
Confidence 55 45555555433333332 22222 223344678889999999 776776666655 1 1111111
Q ss_pred ----cCCCCHhHHHHHHHHHHHhhcCC
Q 047123 464 ----ECPKPVGLQEAATDAVLSLLTVR 486 (579)
Q Consensus 464 ----~~~~~~~v~~~a~~aL~~L~~~~ 486 (579)
...+..+...-+..+|.||+-.+
T Consensus 331 ~~~~~~~~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 331 PNYVPEESSFDILILALGLLINLVEHS 357 (361)
T ss_pred cccccccccchHHHHHHHhHHHheeeC
Confidence 12234566677777777777543
No 159
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.66 E-value=0.04 Score=46.58 Aligned_cols=72 Identities=14% Similarity=0.274 Sum_probs=62.1
Q ss_pred HHHHHHHHHh-ccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc
Q 047123 162 LFIRDIFTRL-QIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVS 234 (579)
Q Consensus 162 ~~v~~Lv~~L-~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~ 234 (579)
..+..|+.+| .+.|+....-|+.-|+.+++..|..+..+-+.|+=..+++|+. ++|++++..|+.++..+-.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~-h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMN-HEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Confidence 3688999999 4557888889999999999999999999989999999999999 9999999999999987654
No 160
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.65 E-value=0.096 Score=48.75 Aligned_cols=120 Identities=11% Similarity=0.102 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhcCCCccHHHHHhc----------------CcHHHHHHHhcC------CCHHHHHHHHHHHHHhhcC
Q 047123 261 MPLKEKAAIGVEAITTDPENAWAISAY----------------GGVSVLIEAFRS------GTALTQSHAVGAIRNIAAV 318 (579)
Q Consensus 261 ~~v~~~aa~~L~~Ls~~~~~~~~i~~~----------------g~i~~Lv~ll~~------~~~~~~~~a~~aL~nLs~~ 318 (579)
......++..|+||+..++.+..+.+. ..+..|+..+.. ....-..+.+.++.|++..
T Consensus 9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~ 88 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL 88 (192)
T ss_pred cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence 345567788899999877766655442 256677775544 2235578889999999999
Q ss_pred hhhHHHHHHc--CC--HHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc---CcHHHHHHhhc
Q 047123 319 EDIKAALAEE--GA--VPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQE---RGLQRLMHLIQ 381 (579)
Q Consensus 319 ~~~~~~l~~~--g~--v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~---g~i~~Lv~ll~ 381 (579)
++.|..+.+. +. +..|+.++.+.+..-+..++.+|.|+|.+.+. ...+... +.++.|+--+.
T Consensus 89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~-H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 89 PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDS-HEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhH-HHHhcCchhhhhHHHHHhhcc
Confidence 9999999843 34 67777777888888899999999999986654 4555553 44555544443
No 161
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.58 E-value=0.79 Score=42.31 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCC-HHHHH
Q 047123 175 GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGG-LGPLL 253 (579)
Q Consensus 175 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~-l~~Lv 253 (579)
++.+|..++.++++++..-+... +..++.+...|. ++++.+|..|+.+|..|.. .+-.+ -.|- +..++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~-D~~~~VR~~al~~Ls~Li~-~d~ik----~k~~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLR-DEDPLVRKTALLVLSHLIL-EDMIK----VKGQLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHC-CCCHHHHHHHHHHHHHHHH-cCcee----ehhhhhHHHH
Confidence 56789999999999987665443 345889999999 9999999999999999887 32111 1233 47888
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCC
Q 047123 254 RILETGSMPLKEKAAIGVEAITTD 277 (579)
Q Consensus 254 ~lL~~~~~~v~~~aa~~L~~Ls~~ 277 (579)
..+.+.+++++..|..++..+...
T Consensus 70 ~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 70 KLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999854
No 162
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=7 Score=45.36 Aligned_cols=221 Identities=14% Similarity=0.145 Sum_probs=132.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCccHHHHHhc--CcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-Ch-hhHHHHHHcCCHHHH
Q 047123 259 GSMPLKEKAAIGVEAITTDPENAWAISAY--GGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VE-DIKAALAEEGAVPVL 334 (579)
Q Consensus 259 ~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~-~~~~~l~~~g~v~~L 334 (579)
.+..+|..+-++|..++..+.......++ .+-..|..-.++.....+...+.+|..|-. .+ +....+ .. .|+.+
T Consensus 666 ~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i-~k-~I~Ev 743 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI-PK-LIPEV 743 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH-HH-HHHHH
Confidence 37889999999999999875554444332 244555556666666778888888877754 22 222222 22 34444
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc---CcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHHH
Q 047123 335 VQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQE---RGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARIL 410 (579)
Q Consensus 335 v~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~---g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~ 410 (579)
+-.++..+...+..+..||..++.. .......++ ..++..+..+..+--.+..+..+.. |..+..- .....++
T Consensus 744 IL~~Ke~n~~aR~~Af~lL~~i~~i--~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e~~~~l 820 (1176)
T KOG1248|consen 744 ILSLKEVNVKARRNAFALLVFIGAI--QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD-IVAITHILQEFKNIL 820 (1176)
T ss_pred HHhcccccHHHHhhHHHHHHHHHHH--HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHhccc
Confidence 4445777888999999999988730 001111111 1455555555444211123333332 3333221 1111222
Q ss_pred hh--cCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123 411 SS--TTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTV 485 (579)
Q Consensus 411 ~~--~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~ 485 (579)
.. -.+.+..+..+|.++++++...|...+..++ .....-....+. ++.+..++ +.....++...-..|-.|.+.
T Consensus 821 d~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls-~d~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 821 DDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALS-HDHKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHH
Confidence 22 0045666666788999999999999999998 444555566666 88888988 666677777777777777654
No 163
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=2.1 Score=46.93 Aligned_cols=205 Identities=15% Similarity=0.113 Sum_probs=119.1
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHH
Q 047123 330 AVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARI 409 (579)
Q Consensus 330 ~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l 409 (579)
+=+.+-+++.+.++-+|...+.+++.-=.+. .+.+++..|+++--++.. ++++..|+-+|.-++..+
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GT-------gnnkair~lLh~aVsD~n-DDVrRaAVialGFVl~~d----- 586 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLALAYVGT-------GNNKAIRRLLHVAVSDVN-DDVRRAAVIALGFVLFRD----- 586 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHHHHhcc-------CchhhHHHhhcccccccc-hHHHHHHHHHheeeEecC-----
Confidence 3344445666777777776665554311111 125678888887433332 489999999999988871
Q ss_pred HhhcCcHHHHHHHHH-hcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcc
Q 047123 410 LSSTTSFIIQLGEFI-KRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSN 488 (579)
Q Consensus 410 ~~~~~g~i~~L~~lL-~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~ 488 (579)
+...+..+.+| ++.++-||..++++|.--|....++.+ +..|-.|. .+...-||..|+-++.-+......
T Consensus 587 ----p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA----i~lLepl~-~D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 587 ----PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA----INLLEPLT-SDPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred ----hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH----HHHHhhhh-cChHHHHHHHHHHHHHHHHHhccc
Confidence 13444555555 577999999999999988866555543 55555566 555677899998888887643211
Q ss_pred -hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhh-ccCCchHHHHHHHHhc
Q 047123 489 -RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLA-ETEVPGAKKVLQRLAG 566 (579)
Q Consensus 489 -~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~-~~~~~~ak~~~~~l~~ 566 (579)
..--+ .+....+.+...+..++...++-+. ..+-|.++|+-..-+.|- .++..+...++--+-.
T Consensus 658 ~~~pkv--~~frk~l~kvI~dKhEd~~aK~GAi------------lAqGildaGGrNvtislqs~tg~~~~~~vvGl~~F 723 (929)
T KOG2062|consen 658 QLCPKV--NGFRKQLEKVINDKHEDGMAKFGAI------------LAQGILDAGGRNVTISLQSMTGHTKLDAVVGLVVF 723 (929)
T ss_pred ccCchH--HHHHHHHHHHhhhhhhHHHHHHHHH------------HHhhhhhcCCceEEEEEeccCCCCchHHHHHHHHH
Confidence 00011 2233456666666555432222211 123344555544444443 3345566666655544
Q ss_pred Ccch
Q 047123 567 NRLK 570 (579)
Q Consensus 567 ~~~~ 570 (579)
.++|
T Consensus 724 lq~W 727 (929)
T KOG2062|consen 724 LQYW 727 (929)
T ss_pred HHHH
Confidence 4444
No 164
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.28 E-value=2.9 Score=39.95 Aligned_cols=179 Identities=14% Similarity=0.100 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcC-----CCHHHHHHHHHHHHHhhcC--hhhHHHHHHcCCHHHHH
Q 047123 263 LKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRS-----GTALTQSHAVGAIRNIAAV--EDIKAALAEEGAVPVLV 335 (579)
Q Consensus 263 v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~-----~~~~~~~~a~~aL~nLs~~--~~~~~~l~~~g~v~~Lv 335 (579)
-..++...|.-++.+++.+..|.+...=-.|-.++.. ..+-++-.+++++..|..+ .+.-..+...++||.++
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 3457777888899999999999998765555555543 3446889999999999874 44566777899999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhcCChhh---HHHHHh----cCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHH
Q 047123 336 QSLTSSSNLAQENAADCIATLAASGEYF---RLLIIQ----ERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAAR 408 (579)
Q Consensus 336 ~lL~~~~~~v~~~a~~~L~~La~~~~~~---r~~l~~----~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~ 408 (579)
+.+..|++..+..|...+..+-.+|... ++..-+ ...+..++..+-+ .++..+..+++++..+|+.++....
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~-~ps~RllKhviRcYlrLsdnprar~ 253 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVS-MPSPRLLKHVIRCYLRLSDNPRARA 253 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999999988766442 111111 1223333333322 2235899999999999998844333
Q ss_pred HHhh-cCcHHH--HHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123 409 ILSS-TTSFII--QLGEFIKRGNVLLQQVSSSLLGNLS 443 (579)
Q Consensus 409 l~~~-~~g~i~--~L~~lL~~~~~~v~~~A~~aL~~L~ 443 (579)
.+.. .++.+. .+..++ ..|+..+..-...+.|++
T Consensus 254 aL~~clPd~Lrd~tfs~~l-~~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 254 ALRSCLPDQLRDGTFSLLL-KDDPETKQWLQQLLKNLC 290 (293)
T ss_pred HHHhhCcchhccchHHHHH-hcChhHHHHHHHHHHHhc
Confidence 3332 111111 122222 245555555555565554
No 165
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.26 E-value=0.31 Score=47.25 Aligned_cols=100 Identities=10% Similarity=0.086 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhh
Q 047123 303 LTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLT-SSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLI 380 (579)
Q Consensus 303 ~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~-~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll 380 (579)
.....|+.+|.-++- ++..+..+.++..+..++.++. ...+.++..++.+|..+..+++.+.+.+-+.+|+..+..++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 345567778877766 8899999999999999999994 45788999999999999888888888888999999999999
Q ss_pred ccCCCChHHHHHHHHHHHHccc
Q 047123 381 QDSTSSIVTVENALLAISSLSL 402 (579)
Q Consensus 381 ~~~~~~~~~~~~A~~aL~~L~~ 402 (579)
++.+.+.+++-.++..|+-...
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHc
Confidence 9987655677666666654443
No 166
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.16 E-value=0.7 Score=46.55 Aligned_cols=169 Identities=14% Similarity=0.069 Sum_probs=106.7
Q ss_pred HHHHHHH-HHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccCh-hh
Q 047123 162 LFIRDIF-TRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAND-ES 239 (579)
Q Consensus 162 ~~v~~Lv-~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~-~~ 239 (579)
..+..+| ..+++.++.+|..|+.+|+-.|--+.+.. ...++.+...++ .++..++..|++++..+...+. +.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~-~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQ-KDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4566666 77889999999999999999987665432 234777888887 7799999999999997765221 11
Q ss_pred HHH-------HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcC----CCHHHHHHH
Q 047123 240 RKI-------VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRS----GTALTQSHA 308 (579)
Q Consensus 240 ~~~-------i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~a 308 (579)
... ......+..+.+.+++.+++++..++..+++|-....... ....+..|+-+--+ ++..++..-
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 111 2224567788889999999999999999999874332211 12233444332211 233444444
Q ss_pred HHHHHHhhcChhhHHHHHHcCCHHHHHHHhc
Q 047123 309 VGAIRNIAAVEDIKAALAEEGAVPVLVQSLT 339 (579)
Q Consensus 309 ~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~ 339 (579)
...+-..+......+....+..++.+-.+.+
T Consensus 177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 177 SVFFPVYASSSPENQERLAEAFLPTLRTLSN 207 (298)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4444455553333334444556666655553
No 167
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.14 E-value=0.22 Score=46.38 Aligned_cols=121 Identities=15% Similarity=0.124 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHcccc-hhHHHHHhhcC--------------cHHHHHHHHHhc------CCHHHHHHHHHHHHHhcCCh
Q 047123 388 VTVENALLAISSLSLS-DSAARILSSTT--------------SFIIQLGEFIKR------GNVLLQQVSSSLLGNLSISD 446 (579)
Q Consensus 388 ~~~~~A~~aL~~L~~~-~~~~~l~~~~~--------------g~i~~L~~lL~~------~~~~v~~~A~~aL~~L~~~~ 446 (579)
.....++..|.||+.. ..+..++.... ..+..|+.++.. ...+-....+.++.|++..+
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~ 89 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP 89 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH
Confidence 5677788899999987 44443443322 367788888765 22344577889999999999
Q ss_pred hhHHHHHHH------HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhc--ccHHHHHhhcCCC
Q 047123 447 GNKRAVASC------MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDE--KSVMRLMQMLDPK 509 (579)
Q Consensus 447 ~~~~~i~~~------v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~--~~i~~Lv~lL~~~ 509 (579)
+.|+.|.+. +..|+.++ ...+..-|..++.+|.|++-.......+..++ +.++.|+--|..+
T Consensus 90 ~gR~~~l~~~~~~~~l~kLl~ft-~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaGp 159 (192)
T PF04063_consen 90 EGRQFFLDPQRYDGPLQKLLPFT-EHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAGP 159 (192)
T ss_pred HHHHHHhCchhhhhHHHHHHHHh-ccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccCC
Confidence 999999886 56677777 55577778899999999998888777777643 4556655555433
No 168
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.03 E-value=5.5 Score=44.99 Aligned_cols=156 Identities=11% Similarity=0.095 Sum_probs=106.8
Q ss_pred HHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHH--HHHHHHhcCC
Q 047123 352 CIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFII--QLGEFIKRGN 428 (579)
Q Consensus 352 ~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~--~L~~lL~~~~ 428 (579)
+|++.+...+..+..+.+.|+...+...++.-. ....+..+.+.+.|++.. +........ ..+. .+-.++...+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~-~~~~~~~il~~l~n~~~~~~~~~~~~~~--~~~~~~~f~~~~~~w~ 570 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFD-NEELHRKILGLLGNLAEVLELRELLMIF--EFIDFSVFKVLLNKWD 570 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHhhhhhhhhHH--HHHHHHHHHHHHhhcc
Confidence 888999888889999999999999999998774 358999999999999987 222221111 1222 3333444444
Q ss_pred H-HHHHHHHHHHHHhcCC----------hhhHHHHHHH----------------HHH-HHHhccCCCCHhHHHHHHHHHH
Q 047123 429 V-LLQQVSSSLLGNLSIS----------DGNKRAVASC----------------MGS-LIKLMECPKPVGLQEAATDAVL 480 (579)
Q Consensus 429 ~-~v~~~A~~aL~~L~~~----------~~~~~~i~~~----------------v~~-Lv~lL~~~~~~~v~~~a~~aL~ 480 (579)
. +.-..++..|..+..+ +...+.+.++ +.+ +.+++..++.+..+..|..++.
T Consensus 571 ~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~ 650 (699)
T KOG3665|consen 571 SIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIK 650 (699)
T ss_pred hhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHH
Confidence 4 6667777777777622 1122222322 333 6666767778888999999999
Q ss_pred HhhcCCcchhHHHhhcccHHHHHhhcCCCc
Q 047123 481 SLLTVRSNRKELVRDEKSVMRLMQMLDPKN 510 (579)
Q Consensus 481 ~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~ 510 (579)
++....+.....+.+.+++..+.+.-....
T Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (699)
T KOG3665|consen 651 NVLEQNKEYCKLVRESNGFELIENIRVLSE 680 (699)
T ss_pred HHHHcChhhhhhhHhccchhhhhhcchhHH
Confidence 999877667777767888777766554433
No 169
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.02 E-value=1 Score=45.33 Aligned_cols=170 Identities=15% Similarity=0.095 Sum_probs=112.7
Q ss_pred cHHHHH-HhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC--CCccH
Q 047123 205 NVGYLI-SLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT--DPENA 281 (579)
Q Consensus 205 ~v~~Lv-~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~--~~~~~ 281 (579)
.+..|+ .-++ +.++.+|+.|+++|+..+--+.+... ..++.+.+.++.++..++..|..++..+.. ..+..
T Consensus 27 ll~~lI~P~v~-~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 27 LLDSLILPAVQ-SSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 344444 3556 88999999999999999873332222 227778888888899999999999998872 21211
Q ss_pred H-------HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHh-c---CCCHHHHHHHH
Q 047123 282 W-------AISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSL-T---SSSNLAQENAA 350 (579)
Q Consensus 282 ~-------~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL-~---~~~~~v~~~a~ 350 (579)
. .......+..+.+.+.+.+++++..++..++.|-....... ...++..|+-.. + ..+..++..-.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 1 12234577888889999999999999999998865332221 112333443333 2 23456777777
Q ss_pred HHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCC
Q 047123 351 DCIATLAASGEYFRLLIIQERGLQRLMHLIQDST 384 (579)
Q Consensus 351 ~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~ 384 (579)
..+-..+...+.. +.......++.+..++....
T Consensus 178 ~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 178 VFFPVYASSSPEN-QERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCcc
Confidence 7777788777653 45556677777777666543
No 170
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=94.92 E-value=2.2 Score=44.47 Aligned_cols=187 Identities=11% Similarity=0.130 Sum_probs=111.0
Q ss_pred HHHHHHHHHhccC-CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH
Q 047123 162 LFIRDIFTRLQIG-GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR 240 (579)
Q Consensus 162 ~~v~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~ 240 (579)
.+|..++.-+... ..+.+..|+..|..+..++...+=.=.-...+..+++.|..+.+...+..|+++|..++. ...
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~---~Q~ 362 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLT---NQP 362 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH---hch
Confidence 3577777777654 667888999888877665521110001112345667777723778899999999999998 333
Q ss_pred HHHHhc--CCHHHHHHHHccCCHHHHHHHHHH-HHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 047123 241 KIVFEE--GGLGPLLRILETGSMPLKEKAAIG-VEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA 317 (579)
Q Consensus 241 ~~i~~~--g~l~~Lv~lL~~~~~~v~~~aa~~-L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~ 317 (579)
..+++. -++..+++.-++...++...|... +.-++...+.+ .|..+..++...|...-..++..+..+..
T Consensus 363 ~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e 435 (516)
T KOG2956|consen 363 ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEPRAVAVIKMLTKLFE 435 (516)
T ss_pred HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcchHHHHHHHHHHHHHh
Confidence 444432 245566666666666655555544 44455433222 12333444444555444455555666554
Q ss_pred ChhhHH-HHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123 318 VEDIKA-ALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA 358 (579)
Q Consensus 318 ~~~~~~-~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~ 358 (579)
.-..-. ...-....|.+++..++.+..+|..++.||..+..
T Consensus 436 ~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 436 RLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 211111 11123478888888999999999999999987753
No 171
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.92 E-value=0.46 Score=42.84 Aligned_cols=144 Identities=17% Similarity=0.183 Sum_probs=97.2
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhH
Q 047123 331 VPVLVQSLT--SSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSA 406 (579)
Q Consensus 331 v~~Lv~lL~--~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~ 406 (579)
++.++..+. ..+++++..+.-++..+- +..+.. ..+-+-+.+-..+..... +....+..++..+-.. +..
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~-~~~~~~~~i~~~~~~~~~--d~~i~~~~~l~~lfp~~~dv~ 78 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREE-FKEKISDFIESLLDEGEM--DSLIIAFSALTALFPGPPDVG 78 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHCCHHC--CHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHH-HHHHHHHHHHHHHccccc--hhHHHHHHHHHHHhCCCHHHH
Confidence 445555554 356678888888888773 222222 222223333334444443 4566677777766555 334
Q ss_pred HH-HHhhcCcHHHHHHHHHh--cCCHHHHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCCCCHh-HHHHHHHHHHH
Q 047123 407 AR-ILSSTTSFIIQLGEFIK--RGNVLLQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECPKPVG-LQEAATDAVLS 481 (579)
Q Consensus 407 ~~-l~~~~~g~i~~L~~lL~--~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~~~-v~~~a~~aL~~ 481 (579)
.. +... |+++.+..+.. ..+..++..++.+|..-|.+...|..+.+. ++.|-++++.+++.. +|..|+-+|+.
T Consensus 79 ~~l~~~e--g~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 79 SELFLSE--GFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHCCTT--THHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHhhh--hHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 44 3355 89999999998 788899999999999888999999999998 999999996666666 88888887765
Q ss_pred h
Q 047123 482 L 482 (579)
Q Consensus 482 L 482 (579)
|
T Consensus 157 l 157 (157)
T PF11701_consen 157 L 157 (157)
T ss_dssp C
T ss_pred C
Confidence 4
No 172
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.79 E-value=0.49 Score=45.68 Aligned_cols=146 Identities=17% Similarity=0.140 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCC-----HHHHHHHHHHHHHhhcc-ChhhHHHHHhcCCHHHHH
Q 047123 180 KKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQ-----SSIREQAVLALSIIVSA-NDESRKIVFEEGGLGPLL 253 (579)
Q Consensus 180 ~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~-----~~~~~~A~~aL~~La~~-~~~~~~~i~~~g~l~~Lv 253 (579)
..|+.-|..+++ +|+.+..+.+....-.|.-+|+ ..+ ...|..++.+++.+... +++.-..+.....+|..+
T Consensus 68 cnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~-tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL 145 (262)
T PF04078_consen 68 CNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLN-TTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL 145 (262)
T ss_dssp HHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH-----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhh-ccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence 456666666665 7888999998887777777776 432 56788899999988862 445667778889999999
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHH-------HHHh-cCcHHHHHH-HhcCCCHHHHHHHHHHHHHhhcChhhHHH
Q 047123 254 RILETGSMPLKEKAAIGVEAITTDPENAW-------AISA-YGGVSVLIE-AFRSGTALTQSHAVGAIRNIAAVEDIKAA 324 (579)
Q Consensus 254 ~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~-------~i~~-~g~i~~Lv~-ll~~~~~~~~~~a~~aL~nLs~~~~~~~~ 324 (579)
+.++.|+.-.+..|..++.++-.++..-. .|.. ..++..++. +....++.+.++.++|-..|+.++..+..
T Consensus 146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~a 225 (262)
T PF04078_consen 146 RIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREA 225 (262)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHH
Confidence 99999999999999999999876554322 2222 224444444 44567889999999999999999998887
Q ss_pred HHH
Q 047123 325 LAE 327 (579)
Q Consensus 325 l~~ 327 (579)
+..
T Consensus 226 L~~ 228 (262)
T PF04078_consen 226 LRQ 228 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 173
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.78 E-value=0.26 Score=56.34 Aligned_cols=131 Identities=17% Similarity=0.131 Sum_probs=105.2
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcch
Q 047123 416 FIIQLGEFIK----RGNVLLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNR 489 (579)
Q Consensus 416 ~i~~L~~lL~----~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~ 489 (579)
+.+.+++..+ .++|++|..|.-+|+.+. .+.+ |.+. ++.|+.++++++++.+|-++.-+++.|+-..+|.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnl 995 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL 995 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence 6667777773 457899999999999998 4444 4444 9999999988999999999999999999888876
Q ss_pred hHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhccCCchHHHHHH
Q 047123 490 KELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKVLQ 562 (579)
Q Consensus 490 ~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~~~ak~~~~ 562 (579)
..-.. +.|...|.+.++. +++.++-++..|-.. .+|.-.|.+......+..+++..+.+.+
T Consensus 996 ie~~T-----~~Ly~rL~D~~~~-vRkta~lvlshLILn------dmiKVKGql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 996 IEPWT-----EHLYRRLRDESPS-VRKTALLVLSHLILN------DMIKVKGQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred cchhh-----HHHHHHhcCccHH-HHHHHHHHHHHHHHh------hhhHhcccHHHHHHHhcCCcHHHHHHHH
Confidence 65443 6788888888877 899999999998654 3445588999999999999887665555
No 174
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.74 E-value=6 Score=45.08 Aligned_cols=181 Identities=14% Similarity=0.130 Sum_probs=109.4
Q ss_pred hcCCHHHHHHHHccC-----CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhc----CCC----HHHHHHHHHH
Q 047123 245 EEGGLGPLLRILETG-----SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFR----SGT----ALTQSHAVGA 311 (579)
Q Consensus 245 ~~g~l~~Lv~lL~~~-----~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~----~~~----~~~~~~a~~a 311 (579)
+.||+..++..+.+- ..+.-......|...+.-+.|+..+.+.|+++.|++.+. .+. ..+-+....+
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 368899999999763 345566677777777788899999999999999998774 333 4555555555
Q ss_pred HHHhhcChh---hHH--HHHHcC--------CHHHHHHHhcCC----CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHH
Q 047123 312 IRNIAAVED---IKA--ALAEEG--------AVPVLVQSLTSS----SNLAQENAADCIATLAASGEYFRLLIIQERGLQ 374 (579)
Q Consensus 312 L~nLs~~~~---~~~--~l~~~g--------~v~~Lv~lL~~~----~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~ 374 (579)
+-.+..... ... ...... -|..+++.+.+. ++.+....++.|-.|+.+++...+.+++.= .
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F--~ 272 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHF--K 272 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHH--H
Confidence 544432111 110 001111 255566666543 678999999999999998876544443310 1
Q ss_pred HHHHh--hccCCCChHHHHHHHHHHHHcccc--------hhHHHHHhhcCcHHHHHHHHHhcCCHHH
Q 047123 375 RLMHL--IQDSTSSIVTVENALLAISSLSLS--------DSAARILSSTTSFIIQLGEFIKRGNVLL 431 (579)
Q Consensus 375 ~Lv~l--l~~~~~~~~~~~~A~~aL~~L~~~--------~~~~~l~~~~~g~i~~L~~lL~~~~~~v 431 (579)
..+++ ++.... .+. ...+..+..++.. .-++.+++. |++...+++|...-+..
T Consensus 273 p~l~f~~~D~~~~-~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~--GIv~~a~~YL~~~~P~~ 335 (802)
T PF13764_consen 273 PYLDFDKFDEEHS-PDE-QFKLECFCEIAEGIPNNSNGNRLKDKILES--GIVQDAIDYLLKHFPSL 335 (802)
T ss_pred HhcChhhcccccC-chH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHh--hHHHHHHHHHHHhCccc
Confidence 11111 111111 111 2234445555443 346678888 99998998887665544
No 175
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.67 E-value=7.1 Score=42.38 Aligned_cols=175 Identities=14% Similarity=0.133 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-hhhHHHHHHcCCHHHHHH
Q 047123 259 GSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV-EDIKAALAEEGAVPVLVQ 336 (579)
Q Consensus 259 ~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~-~~~~~~l~~~g~v~~Lv~ 336 (579)
++...+..|+..+..... .|+.... ++..++.+|.+++..+|..|+..|-.+|.+ ++....+ +.+|++
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~Q 103 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQ 103 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHH
Confidence 578889999999988774 5554432 569999999999999999999999999984 4554444 568999
Q ss_pred HhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhc---cCCCChHHHHHHHHHHHHcccc---hhHH--H
Q 047123 337 SLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQ---DSTSSIVTVENALLAISSLSLS---DSAA--R 408 (579)
Q Consensus 337 lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~---~~~~~~~~~~~A~~aL~~L~~~---~~~~--~ 408 (579)
+|.++++.-...+-.+|..+-..++. +.+..+...+. .++ +.+++.+...|..=... +... .
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~d--e~~Re~~lkFl~~kl~~l~~~~~~p~~ 173 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGD--EQVRERALKFLREKLKPLKPELLTPQK 173 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS---HHHHHHHHHHHHHHGGGS-TTTS---H
T ss_pred HHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhCcHHHhhchH
Confidence 99988877667777777776655542 34555555444 333 47888888777533322 1111 2
Q ss_pred HHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-----ChhhHHHHHHH
Q 047123 409 ILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI-----SDGNKRAVASC 455 (579)
Q Consensus 409 l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~-----~~~~~~~i~~~ 455 (579)
-++. -++..+-++|.+-..+--.....+|..+.. ..+.++.+.+.
T Consensus 174 E~e~--~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~i 223 (556)
T PF05918_consen 174 EMEE--FIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDI 223 (556)
T ss_dssp HHHH--HHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHH
Confidence 2222 244555666665444333444455555553 34445555554
No 176
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.66 E-value=0.3 Score=40.00 Aligned_cols=90 Identities=16% Similarity=0.118 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHh--cCCHHHHHHHH
Q 047123 179 KKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFE--EGGLGPLLRIL 256 (579)
Q Consensus 179 ~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~--~g~l~~Lv~lL 256 (579)
|..++.+|...+..-+..... .-...+++++..+. +++..+|..|+++|.+++. ..+..+.. ...++.|.+++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~-~l~~Il~pVL~~~~-D~d~rVRy~AcEaL~ni~k---~~~~~~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISK-YLDEILPPVLKCFD-DQDSRVRYYACEALYNISK---VARGEILPYFNEIFDALCKLS 77 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHH-HHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 445566666665433333111 13456899999999 9999999999999999998 34444432 35788888998
Q ss_pred ccCCHHHHHHHHHHHHHh
Q 047123 257 ETGSMPLKEKAAIGVEAI 274 (579)
Q Consensus 257 ~~~~~~v~~~aa~~L~~L 274 (579)
.+.++.|+..| ..|-+|
T Consensus 78 ~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 78 ADPDENVRSAA-ELLDRL 94 (97)
T ss_pred cCCchhHHHHH-HHHHHH
Confidence 88888887766 444443
No 177
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.56 E-value=0.077 Score=44.88 Aligned_cols=70 Identities=11% Similarity=0.228 Sum_probs=58.7
Q ss_pred HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHh
Q 047123 456 MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVL 526 (579)
Q Consensus 456 v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~ 526 (579)
+..|+++|+.+.++.+...||.=|+.+++..++.+.++.+.|+-..++++|.+++++ ++..|+-++..+.
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~e-Vr~eAL~avQklm 114 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPE-VRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHH-HHHHHHHHHHHHH
Confidence 889999996666788888899999999999999999998888889999999999888 8888888777664
No 178
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.33 E-value=3.3 Score=42.93 Aligned_cols=242 Identities=13% Similarity=0.128 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCH-HHHHHHHHHHHHhhccCh
Q 047123 160 LVLFIRDIFTRLQIG-GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQS-SIREQAVLALSIIVSAND 237 (579)
Q Consensus 160 ~~~~v~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~-~~~~~A~~aL~~La~~~~ 237 (579)
....|..++..|..+ ....|..++..|..-|. ++..+..+..+|.+..+++.+...++. ...-.++.++..++. +.
T Consensus 19 f~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~-d~ 96 (361)
T PF07814_consen 19 FADEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSR-DG 96 (361)
T ss_pred HHHHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHcc-CC
Confidence 344577788888744 45678888888888885 778999999999999999988414443 333333444445555 44
Q ss_pred hhHHHHHhcCCHHHHHHHHcc--C------------------------------------------CHHHHHHHHHHHHH
Q 047123 238 ESRKIVFEEGGLGPLLRILET--G------------------------------------------SMPLKEKAAIGVEA 273 (579)
Q Consensus 238 ~~~~~i~~~g~l~~Lv~lL~~--~------------------------------------------~~~v~~~aa~~L~~ 273 (579)
.+-..+.+.+....++++++. . ....+.-|..++..
T Consensus 97 ~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~ 176 (361)
T PF07814_consen 97 LNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALES 176 (361)
T ss_pred cchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHH
Confidence 444444444444444565550 0 00112233333444
Q ss_pred hc---------------CCCccHHHHHhcCcHHHHHHHhcC----CC-------H-----HHHHHHHHHHHHhhc-Chhh
Q 047123 274 IT---------------TDPENAWAISAYGGVSVLIEAFRS----GT-------A-----LTQSHAVGAIRNIAA-VEDI 321 (579)
Q Consensus 274 Ls---------------~~~~~~~~i~~~g~i~~Lv~ll~~----~~-------~-----~~~~~a~~aL~nLs~-~~~~ 321 (579)
++ ..+..++.+...||+..++..+.+ .+ + .....+..+|-|.+. ++++
T Consensus 177 l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~n 256 (361)
T PF07814_consen 177 LVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEEN 256 (361)
T ss_pred HHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccc
Confidence 41 011234556667788999988751 11 1 234556666666665 5666
Q ss_pred HHHHHHc--CCHHHHHHH-h---cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHH-------hhcc-----C
Q 047123 322 KAALAEE--GAVPVLVQS-L---TSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMH-------LIQD-----S 383 (579)
Q Consensus 322 ~~~l~~~--g~v~~Lv~l-L---~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~-------ll~~-----~ 383 (579)
+...... +.++.+... + ..........+++.+.|++..++..+..+...+....+.. ++.. .
T Consensus 257 q~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~~ 336 (361)
T PF07814_consen 257 QSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVPE 336 (361)
T ss_pred hHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccccccc
Confidence 6666532 233332222 2 2223455788999999999988776666665433322211 1110 0
Q ss_pred CCChHHHHHHHHHHHHcccc
Q 047123 384 TSSIVTVENALLAISSLSLS 403 (579)
Q Consensus 384 ~~~~~~~~~A~~aL~~L~~~ 403 (579)
...-+....+.+++-||+..
T Consensus 337 ~~~~D~~IL~Lg~LINL~E~ 356 (361)
T PF07814_consen 337 ESSFDILILALGLLINLVEH 356 (361)
T ss_pred cccchHHHHHHHhHHHheee
Confidence 11235666777777777765
No 179
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.30 E-value=1.2 Score=47.17 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=107.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCH----HHHHHHHHHHHHhhcChhhHHH
Q 047123 249 LGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTA----LTQSHAVGAIRNIAAVEDIKAA 324 (579)
Q Consensus 249 l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~----~~~~~a~~aL~nLs~~~~~~~~ 324 (579)
...+.+++.++++..+..+...|..++.++.....++...++..|..++.+++. .+....+.++..+-.+.-..=.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 445677888888888888999999999999999999999999999999998765 3444444444433221100000
Q ss_pred HHHcCCHHHHHHHh--cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHccc
Q 047123 325 LAEEGAVPVLVQSL--TSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSL 402 (579)
Q Consensus 325 l~~~g~v~~Lv~lL--~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~ 402 (579)
.+...+|.....+. +..+..+...|+..|-++...+...+..+.++--++.|+..++..+. .++..|...+..+-.
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~--~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQ--RIQTCAIALLNALFR 242 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcch--HHHHHHHHHHHHHHh
Confidence 01111233333333 22345678889999999988777778888889999999999998886 677777777777665
Q ss_pred c
Q 047123 403 S 403 (579)
Q Consensus 403 ~ 403 (579)
.
T Consensus 243 ~ 243 (713)
T KOG2999|consen 243 K 243 (713)
T ss_pred h
Confidence 4
No 180
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.11 E-value=2.6 Score=47.03 Aligned_cols=215 Identities=12% Similarity=0.129 Sum_probs=133.0
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHH
Q 047123 255 ILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVL 334 (579)
Q Consensus 255 lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~L 334 (579)
.+.++-..++..+...|..+...-+.+..+...+++...+..+++.|+-+--+|+..+..||.. ..+..+|.+
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL 807 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDL 807 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHH
Confidence 3344456678889999999987667777888899999999999999998888888877777652 345567777
Q ss_pred HHHhcC-C---CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-h-hHHH
Q 047123 335 VQSLTS-S---SNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-D-SAAR 408 (579)
Q Consensus 335 v~lL~~-~---~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~-~~~~ 408 (579)
.....+ . .++.+-.+-+++.++...-.+...... .-.+...+...++. +...|..++..+++||.. . ....
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrep--d~~~RaSS~a~lg~Lcq~~a~~vsd 884 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREP--DHEFRASSLANLGQLCQLLAFQVSD 884 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCc--hHHHHHhHHHHHHHHHHHHhhhhhH
Confidence 774422 1 134445555666666542211111111 12334444444533 236788999999999875 1 1111
Q ss_pred HHhhcCcHHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCh--hhHH----HHHHHHHHHHHhccCCCCHhHHHHHHHHHHH
Q 047123 409 ILSSTTSFIIQLGEFIK-RGNVLLQQVSSSLLGNLSISD--GNKR----AVASCMGSLIKLMECPKPVGLQEAATDAVLS 481 (579)
Q Consensus 409 l~~~~~g~i~~L~~lL~-~~~~~v~~~A~~aL~~L~~~~--~~~~----~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~ 481 (579)
.+. .++..++.+.. ++..-+|+.|+..+..+-.+. +.-. ...+....+....+..++..++..++.++-.
T Consensus 885 ~~~---ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee 961 (982)
T KOG4653|consen 885 FFH---EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE 961 (982)
T ss_pred HHH---HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 222 24445555544 456788999999998887322 2221 2222255555566566667777777777665
Q ss_pred h
Q 047123 482 L 482 (579)
Q Consensus 482 L 482 (579)
+
T Consensus 962 i 962 (982)
T KOG4653|consen 962 I 962 (982)
T ss_pred H
Confidence 5
No 181
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=94.03 E-value=1.1 Score=50.37 Aligned_cols=147 Identities=16% Similarity=0.097 Sum_probs=104.1
Q ss_pred cCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhh
Q 047123 370 ERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGN 448 (579)
Q Consensus 370 ~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~ 448 (579)
...+|.+++.+.+.+. ..+-+-..+|.++-.+--...+...-+..++.|++.|...+..+|..+...+.-+. .++..
T Consensus 866 ~~ivP~l~~~~~t~~~--~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPG--SQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HhhHHHHHHHhccCCc--cchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 3467889888885554 56777777777777662223333333357888899999999999999999888887 66666
Q ss_pred HHHHHHH-HHHHHHhccCCCC--HhHHHHHHHHHHHhhc-CCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHH
Q 047123 449 KRAVASC-MGSLIKLMECPKP--VGLQEAATDAVLSLLT-VRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVM 520 (579)
Q Consensus 449 ~~~i~~~-v~~Lv~lL~~~~~--~~v~~~a~~aL~~L~~-~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~ 520 (579)
...-... +|.++.+-.+.++ ..+|+.|.++|..|.+ .+.++-.-.+ ...+..|...|+++.-- +++.|+.
T Consensus 944 ~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr-~~Vl~al~k~LdDkKRl-VR~eAv~ 1017 (1030)
T KOG1967|consen 944 QTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFR-PLVLRALIKILDDKKRL-VRKEAVD 1017 (1030)
T ss_pred chHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccccc-HHHHHHhhhccCcHHHH-HHHHHHH
Confidence 6655555 8888888744443 7899999999999998 4444433333 56678888888866433 6666665
No 182
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.88 E-value=2.2 Score=45.25 Aligned_cols=151 Identities=16% Similarity=0.189 Sum_probs=113.9
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCH----HHHHHHHHHHHHhcCCCccH
Q 047123 206 VGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSM----PLKEKAAIGVEAITTDPENA 281 (579)
Q Consensus 206 v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~----~v~~~aa~~L~~Ls~~~~~~ 281 (579)
...+.+.+. +++...+..|+.-|..++. ++.....++...++..|.++..++.. ++.....+++..+-...-..
T Consensus 85 a~~i~e~l~-~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 85 AKRIMEILT-EGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHh-CCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 455677777 8888888889999999999 99999999999999999999999743 45555556665555443345
Q ss_pred HHHHhcCcHHHHHHHhcC--CCHHHHHHHHHHHHHhhcChh-hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123 282 WAISAYGGVSVLIEAFRS--GTALTQSHAVGAIRNIAAVED-IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA 358 (579)
Q Consensus 282 ~~i~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLs~~~~-~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~ 358 (579)
|......+|.....+.+. .+..+...|+..|-++..... .+..+.++--+..|+..+...+..++..|+..+..+-.
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 555555566666666543 344667788888888877544 56667788889999999999998898888888777753
No 183
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=93.83 E-value=1.6 Score=49.61 Aligned_cols=187 Identities=14% Similarity=0.173 Sum_probs=126.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
..+.+-..+-+.++..|.+|++.+...+.+.. ........|.+..+++....+.+..+...|+.+|..|+...... ..
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~ 331 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FR 331 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hH
Confidence 34566677788999999999999999987554 11111133445555554433677888899999999998833332 11
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-Ch-h
Q 047123 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VE-D 320 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~-~ 320 (579)
=...++.+.|+..+.+....++..+..++-....... -....+.+..++.++++..+..+...+..... .+ .
T Consensus 332 ~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 332 KYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 1234788999999998888888777776666554111 12245778888999999888877666644433 22 2
Q ss_pred hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047123 321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLA 357 (579)
Q Consensus 321 ~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La 357 (579)
+...-.-.+.+|.++....+.+.+|+..+.+++..+-
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 2222223457788888888889999999999988764
No 184
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.78 E-value=3.9 Score=45.75 Aligned_cols=179 Identities=12% Similarity=0.101 Sum_probs=122.5
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHH
Q 047123 296 AFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQR 375 (579)
Q Consensus 296 ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~ 375 (579)
.+.++-+.++..++..|+.+....+....+..++++......+.+.++-+--+|+..+..||.-.+ +..++-
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~il~d 806 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------EDILPD 806 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hhhHHH
Confidence 334455568888888888888766666667788999999999999998888889987777775332 445677
Q ss_pred HHHh-hccCCC-ChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCh-hhH
Q 047123 376 LMHL-IQDSTS-SIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISD-GNK 449 (579)
Q Consensus 376 Lv~l-l~~~~~-~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~-~~~ 449 (579)
+... ...... ..+.+-..-.++.++... +........ .+.+++...+..+...|..+...+++|+ ... ...
T Consensus 807 L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~---Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vs 883 (982)
T KOG4653|consen 807 LSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAV---LINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVS 883 (982)
T ss_pred HHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHH---HHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhh
Confidence 7663 322221 013333344666666554 333333222 4555666667667777899999999999 222 333
Q ss_pred HHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123 450 RAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTV 485 (579)
Q Consensus 450 ~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~ 485 (579)
..|.+.+..++.+...+.+.-+|.+|+..+..+...
T Consensus 884 d~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 884 DFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 466666777788776778899999999999998764
No 185
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.72 E-value=16 Score=41.80 Aligned_cols=234 Identities=12% Similarity=0.059 Sum_probs=133.1
Q ss_pred cCCHHHHHHHHcc--------CCHHHHHHHHHHHHHhcC---CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Q 047123 246 EGGLGPLLRILET--------GSMPLKEKAAIGVEAITT---DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRN 314 (579)
Q Consensus 246 ~g~l~~Lv~lL~~--------~~~~v~~~aa~~L~~Ls~---~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~n 314 (579)
.|.++-++.+|.. .++.-+..|.+++++|+. .+..-....+.=.+..++..+++.---++..||+++..
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 3556677777762 256677888888888882 12222233333355666667777777899999999998
Q ss_pred hhcCh-hhHHHHHHcCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHh--cCcHHHHHHhhccCCCChHHH
Q 047123 315 IAAVE-DIKAALAEEGAVPVLVQSLT-SSSNLAQENAADCIATLAASGEYFRLLIIQ--ERGLQRLMHLIQDSTSSIVTV 390 (579)
Q Consensus 315 Ls~~~-~~~~~l~~~g~v~~Lv~lL~-~~~~~v~~~a~~~L~~La~~~~~~r~~l~~--~g~i~~Lv~ll~~~~~~~~~~ 390 (579)
.+..+ .+...+. .+++...+.|. +.+-.|+..|+-+|..+....+...+.+.. .+.++.|+++.+.... +.+.
T Consensus 489 ~~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En-d~Lt 565 (1010)
T KOG1991|consen 489 FSSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN-DDLT 565 (1010)
T ss_pred HHhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch-hHHH
Confidence 88411 1111111 24555666665 666679999999999998876654443433 4556666666665443 1222
Q ss_pred HHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhc---C---CHHHHHHHHHHHHHhc-------CChhhHHHHHHH
Q 047123 391 ENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKR---G---NVLLQQVSSSLLGNLS-------ISDGNKRAVASC 455 (579)
Q Consensus 391 ~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~---~---~~~v~~~A~~aL~~L~-------~~~~~~~~i~~~ 455 (579)
..--..+...+.. +....+.+. ....+++++.. . +.+-+..|.++|..+. ..++.-+.+...
T Consensus 566 ~vme~iV~~fseElsPfA~eL~q~---La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~ 642 (1010)
T KOG1991|consen 566 NVMEKIVCKFSEELSPFAVELCQN---LAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPI 642 (1010)
T ss_pred HHHHHHHHHHHHhhchhHHHHHHH---HHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 2222223333322 333334433 55666777763 2 2234455555555554 344444444444
Q ss_pred -HHHHHHhccCCCCHhHHHHHHHHHHHhhcCC
Q 047123 456 -MGSLIKLMECPKPVGLQEAATDAVLSLLTVR 486 (579)
Q Consensus 456 -v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~ 486 (579)
.+..-.+| +.+-.++-+.+.....++....
T Consensus 643 ~l~vi~~iL-~~~i~dfyeE~~ei~~~~t~~~ 673 (1010)
T KOG1991|consen 643 VLPVIGFIL-KNDITDFYEELLEIVSSLTFLS 673 (1010)
T ss_pred HHHHHHHHH-HHhhHHHHHHHHHHHhhhhhhh
Confidence 55555566 5545566666677666665443
No 186
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.63 E-value=21 Score=42.87 Aligned_cols=142 Identities=14% Similarity=0.166 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHH-HHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh
Q 047123 161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAV-VAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDES 239 (579)
Q Consensus 161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~-i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~ 239 (579)
..++..++..|.......|..|+.||..+...++..... -++.|+.. -+. +....||+.|+..++.....+++.
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~----R~~-DssasVREAaldLvGrfvl~~~e~ 889 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHG----RLN-DSSASVREAALDLVGRFVLSIPEL 889 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHH----hhc-cchhHHHHHHHHHHhhhhhccHHH
Confidence 346777888888888999999999999998777643221 12223222 233 667899999999999665546665
Q ss_pred HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhc---CCCHHHHHHHHHHHHHhh
Q 047123 240 RKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFR---SGTALTQSHAVGAIRNIA 316 (579)
Q Consensus 240 ~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~---~~~~~~~~~a~~aL~nLs 316 (579)
..++. ..+..-..+....||..+..+++.++...+.-..+ +....+++. ++...+++.+..++.++.
T Consensus 890 ~~qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i-----~~~cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 890 IFQYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI-----VDMCAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred HHHHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH-----HHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 55443 23333344556778999999999988533222222 122223322 223335666666665554
Q ss_pred c
Q 047123 317 A 317 (579)
Q Consensus 317 ~ 317 (579)
.
T Consensus 960 F 960 (1692)
T KOG1020|consen 960 F 960 (1692)
T ss_pred c
Confidence 3
No 187
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.59 E-value=5.9 Score=36.45 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc-HHHHHH
Q 047123 301 TALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERG-LQRLMH 378 (579)
Q Consensus 301 ~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~-i~~Lv~ 378 (579)
++.++.+++.++.-|+. ++..-+ ..++.+...|.++++.+|..|+.+|..|...+- +.-.|- +..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHH
Confidence 46788899999988876 333222 357888999999999999999999999986431 111233 367777
Q ss_pred hhccCCCChHHHHHHHHHHHHcccc
Q 047123 379 LIQDSTSSIVTVENALLAISSLSLS 403 (579)
Q Consensus 379 ll~~~~~~~~~~~~A~~aL~~L~~~ 403 (579)
.+.+.++ .++..|..++..+...
T Consensus 71 ~l~D~~~--~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENP--EIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCH--HHHHHHHHHHHHHHHh
Confidence 7766655 8999999999988766
No 188
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.57 E-value=9.7 Score=38.88 Aligned_cols=217 Identities=10% Similarity=0.071 Sum_probs=151.2
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-Ccc-----HHHHHhc--CcHHHHHHHhcCCCHHHHHHHHHHHHH
Q 047123 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PEN-----AWAISAY--GGVSVLIEAFRSGTALTQSHAVGAIRN 314 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-~~~-----~~~i~~~--g~i~~Lv~ll~~~~~~~~~~a~~aL~n 314 (579)
+...+.+..|+..|..-+-+.+..++.+..++-.. .+. ..-+..+ .++..|+.-- +++++--.+...|+.
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRe 149 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHH
Confidence 34468899999999999999999999999888742 222 2233333 3555555543 345556677888899
Q ss_pred hhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh---cCcHHHHHHhhccCCCChHHHH
Q 047123 315 IAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQ---ERGLQRLMHLIQDSTSSIVTVE 391 (579)
Q Consensus 315 Ls~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~---~g~i~~Lv~ll~~~~~~~~~~~ 391 (579)
...++.....+.....+..+.+++..++=++...|..++..+-..+...-..... .........++.+++. -.+.
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NY--vtkr 227 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNY--VTKR 227 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSH--HHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCe--Eeeh
Confidence 8889888888888888889999999999999999999999976655554444444 3455677778888776 8999
Q ss_pred HHHHHHHHcccc-hhHHHHHh--hcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCh----hhHHHHHHHHHHHHHhc
Q 047123 392 NALLAISSLSLS-DSAARILS--STTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISD----GNKRAVASCMGSLIKLM 463 (579)
Q Consensus 392 ~A~~aL~~L~~~-~~~~~l~~--~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~----~~~~~i~~~v~~Lv~lL 463 (579)
.++..|..|-.. .+...+.. +++.-+..++.+|++.+..+|.+|-.++.-...+| +....+...=+.|++.+
T Consensus 228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl 306 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFL 306 (335)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHH
T ss_pred hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHH
Confidence 999999999876 44332221 12355788899999999999999999988887443 44444444444444444
No 189
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.49 E-value=0.13 Score=32.28 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=25.3
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHhhc
Q 047123 206 VGYLISLLDFHHQSSIREQAVLALSIIVS 234 (579)
Q Consensus 206 v~~Lv~LL~~~~~~~~~~~A~~aL~~La~ 234 (579)
+|.++++++ ++++++|..|+.+|+.++.
T Consensus 2 lp~l~~~l~-D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLN-DPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHHHh
Confidence 789999999 9999999999999999876
No 190
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.45 E-value=19 Score=41.98 Aligned_cols=226 Identities=12% Similarity=0.130 Sum_probs=129.7
Q ss_pred CCCHHHHHHHHHHHHHhhccChhhHHHHHhc--CCHHHHHHHHccCCHHHHHHHHHHHHHhcC--CCccHHHHHhcCcHH
Q 047123 216 HHQSSIREQAVLALSIIVSANDESRKIVFEE--GGLGPLLRILETGSMPLKEKAAIGVEAITT--DPENAWAISAYGGVS 291 (579)
Q Consensus 216 ~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~--g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~--~~~~~~~i~~~g~i~ 291 (579)
+.+..+|.++-+.|..++. .+.+.....+. -....|..-+++.+...+.....+|..|-. +.+.+..+. . .|+
T Consensus 665 ~~~~~vQkK~yrlL~~l~~-~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k-~I~ 741 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSS-SPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP-K-LIP 741 (1176)
T ss_pred cccHHHHHHHHHHHHHHhc-CCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-H-HHH
Confidence 5578999999999999998 55444333221 123344444455566677777777777763 223333331 2 233
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhc----ChhhHHHHHHcCCHHHHHHHhcCC--CHHHHHHH--HHHHHHHhcCChhh
Q 047123 292 VLIEAFRSGTALTQSHAVGAIRNIAA----VEDIKAALAEEGAVPVLVQSLTSS--SNLAQENA--ADCIATLAASGEYF 363 (579)
Q Consensus 292 ~Lv~ll~~~~~~~~~~a~~aL~nLs~----~~~~~~~l~~~g~v~~Lv~lL~~~--~~~v~~~a--~~~L~~La~~~~~~ 363 (579)
.++-.++..+...+..+..+|..++. .++..+. ..-.+...+..+..+ .+..+..+ +-++..+...
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e---- 815 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE---- 815 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH----
Confidence 33333477788899999999988873 1111000 011344444444333 22222222 2333333221
Q ss_pred HHHHHhcCc----HHHHHHhhccCCCChHHHHHHHHHHHHcccc---hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHH
Q 047123 364 RLLIIQERG----LQRLMHLIQDSTSSIVTVENALLAISSLSLS---DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSS 436 (579)
Q Consensus 364 r~~l~~~g~----i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~---~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~ 436 (579)
...+.+.+. ++.+..++.+.+. ++...|++.+..++.. .......+. .++.++.+++.....++....
T Consensus 816 ~~~~ld~~~l~~li~~V~~~L~s~sr--eI~kaAI~fikvlv~~~pe~~l~~~~~~---LL~sll~ls~d~k~~~r~Kvr 890 (1176)
T KOG1248|consen 816 FKNILDDETLEKLISMVCLYLASNSR--EIAKAAIGFIKVLVYKFPEECLSPHLEE---LLPSLLALSHDHKIKVRKKVR 890 (1176)
T ss_pred HhccccHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHcCCHHHHhhhHHH---HHHHHHHHHHhhhHHHHHHHH
Confidence 111223333 4444445566555 8999999999999887 333444443 788888888888899999988
Q ss_pred HHHHHhc--CChhhHHHHHHH
Q 047123 437 SLLGNLS--ISDGNKRAVASC 455 (579)
Q Consensus 437 ~aL~~L~--~~~~~~~~i~~~ 455 (579)
..+-.|. ...+.-+.+.+.
T Consensus 891 ~LlekLirkfg~~eLe~~~pe 911 (1176)
T KOG1248|consen 891 LLLEKLIRKFGAEELESFLPE 911 (1176)
T ss_pred HHHHHHHHHhCHHHHHhhCHH
Confidence 8888887 444444444333
No 191
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.35 E-value=7.9 Score=40.34 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=75.8
Q ss_pred HHHHHHHhccC---CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhc-c--CCCHHHHHHHHHHHHHhhccCh
Q 047123 164 IRDIFTRLQIG---GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLD-F--HHQSSIREQAVLALSIIVSAND 237 (579)
Q Consensus 164 v~~Lv~~L~~~---~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~-~--~~~~~~~~~A~~aL~~La~~~~ 237 (579)
...|...++.. .+..-..|+..+..+...+|.....+.+.|.++.+++-+. . -++.++-..--.+++.||- |.
T Consensus 108 ~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~ 186 (379)
T PF06025_consen 108 LSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NN 186 (379)
T ss_pred HHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CH
Confidence 33444444433 5667788999999999999999999999999999998665 1 2346666677788999999 99
Q ss_pred hhHHHHHhcCCHHHHHHHHccC
Q 047123 238 ESRKIVFEEGGLGPLLRILETG 259 (579)
Q Consensus 238 ~~~~~i~~~g~l~~Lv~lL~~~ 259 (579)
...+.+.+.+.++.+++++.+.
T Consensus 187 ~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 187 RGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHHHHHHhcChHHHHHHHhCCH
Confidence 9999999999999999998764
No 192
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.91 E-value=14 Score=38.95 Aligned_cols=157 Identities=8% Similarity=-0.003 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccCh
Q 047123 158 QDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAND 237 (579)
Q Consensus 158 ~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~ 237 (579)
....+.+..+.....+.+...|..|++.|++.++.-|..+......-....+-.|.+ ..+.+++-.++.+|..+.. ..
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D-~~~~~V~leam~~Lt~v~~-~~ 331 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYD-DLNEEVQLEAMKCLTMVLE-KA 331 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHH-hh
Confidence 334455666667777788889999999999999886665554443333344445666 6678999999988887766 33
Q ss_pred hhHHHHH-hcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC--CCccHHHHHh--cCcHHHHHHHhcCCCHHHHHHHHHHH
Q 047123 238 ESRKIVF-EEGGLGPLLRILETGSMPLKEKAAIGVEAITT--DPENAWAISA--YGGVSVLIEAFRSGTALTQSHAVGAI 312 (579)
Q Consensus 238 ~~~~~i~-~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~--~~~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~a~~aL 312 (579)
.++...- =-.+.-.+..+.++.+++++..+...+..|+. ....+..+.+ .+...+++-++++.++.+- .||+..
T Consensus 332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~~ 410 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRSE 410 (533)
T ss_pred hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHHH
Confidence 3322211 01234456677788899999999888888873 3334444443 2344566667777777554 444444
Q ss_pred HHhhc
Q 047123 313 RNIAA 317 (579)
Q Consensus 313 ~nLs~ 317 (579)
...+.
T Consensus 411 ~~~c~ 415 (533)
T KOG2032|consen 411 LRTCY 415 (533)
T ss_pred HHhcC
Confidence 44443
No 193
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.72 E-value=22 Score=40.68 Aligned_cols=277 Identities=9% Similarity=0.100 Sum_probs=150.7
Q ss_pred CcHHHHHHhhcc-------CCCHHHHHHHHHHHHHhhcc---ChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 047123 204 GNVGYLISLLDF-------HHQSSIREQAVLALSIIVSA---NDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEA 273 (579)
Q Consensus 204 g~v~~Lv~LL~~-------~~~~~~~~~A~~aL~~La~~---~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~ 273 (579)
+.++.++..+.. ..++.-.+.|+.++++|+.- ..-++.. .+.=.++.++..+.++..-.|..|||.+..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHH-HHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 456666665540 12467777888888888751 1122222 222245566667778888899999999999
Q ss_pred hcC-CCccHHHHHhcCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcChh-hHHHHHH--cCCHHHHHHHhcCCCHHHHHH
Q 047123 274 ITT-DPENAWAISAYGGVSVLIEAFR-SGTALTQSHAVGAIRNIAAVED-IKAALAE--EGAVPVLVQSLTSSSNLAQEN 348 (579)
Q Consensus 274 Ls~-~~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLs~~~~-~~~~l~~--~g~v~~Lv~lL~~~~~~v~~~ 348 (579)
++. +-.....+ ..++....+.+. +.+-.++..|+-+|..+-.+.+ +...+.. -+.++.|+.+.+.-+.+....
T Consensus 489 ~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~ 566 (1010)
T KOG1991|consen 489 FSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN 566 (1010)
T ss_pred HHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence 993 22222222 123445555555 6666889999999988765433 3333332 123344444444333333332
Q ss_pred HHHHHHHHhcCChhhHHHHHh--cCcHHHHHHhhcc---CC-CChHHHHHHHHHHHHcccc----hhHHHHHhh-cCcHH
Q 047123 349 AADCIATLAASGEYFRLLIIQ--ERGLQRLMHLIQD---ST-SSIVTVENALLAISSLSLS----DSAARILSS-TTSFI 417 (579)
Q Consensus 349 a~~~L~~La~~~~~~r~~l~~--~g~i~~Lv~ll~~---~~-~~~~~~~~A~~aL~~L~~~----~~~~~l~~~-~~g~i 417 (579)
++..+. +...+.......+ ........+++.. .+ ..+.-...|.++|..+..- ++...++.. .+-++
T Consensus 567 vme~iV--~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l 644 (1010)
T KOG1991|consen 567 VMEKIV--CKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVL 644 (1010)
T ss_pred HHHHHH--HHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 222221 1111111111111 1233455555553 11 2234445566666666543 222222221 11455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCC
Q 047123 418 IQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVR 486 (579)
Q Consensus 418 ~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~ 486 (579)
+.+-.+|.+.-.++-+++..++..++ ..++....+++-.+.+.+.+ .....+.-....-+|.|.....
T Consensus 645 ~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~-~~~~~dyf~d~~~~l~N~vt~g 713 (1010)
T KOG1991|consen 645 PVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVF-QDDGIDYFTDMMPALHNYVTYG 713 (1010)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhheeeC
Confidence 56666778887888888898888888 66666666666666666666 3333455556666777766543
No 194
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.23 E-value=2.1 Score=39.53 Aligned_cols=110 Identities=14% Similarity=0.118 Sum_probs=78.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccC-hhhHHHHHhhCcHHHHHHhhcc--------CCCHHHHHHHHHHHHHhh
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDD-DKSAAVVAKEGNVGYLISLLDF--------HHQSSIREQAVLALSIIV 233 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~LL~~--------~~~~~~~~~A~~aL~~La 233 (579)
....++..+..+.... +.+..|....+.. ......+++.||+..|+.+|.. ..+...+..++.+|..|.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3456677776665432 4455555444433 3567778889999999998841 134578889999999999
Q ss_pred ccChhhHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 047123 234 SANDESRKIVFE-EGGLGPLLRILETGSMPLKEKAAIGVEAIT 275 (579)
Q Consensus 234 ~~~~~~~~~i~~-~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls 275 (579)
. +..+...++. .+++..++..|.+.+..++..+..+|..++
T Consensus 145 n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 N-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp S-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred c-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 9 7777777765 589999999999999999999999998775
No 195
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.86 E-value=1.5 Score=40.52 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=62.6
Q ss_pred HHHHHhcCcHHHHHHHhcC---------CCHHHHHHHHHHHHHhhcChhhHHHHH-HcCCHHHHHHHhcCCCHHHHHHHH
Q 047123 281 AWAISAYGGVSVLIEAFRS---------GTALTQSHAVGAIRNIAAVEDIKAALA-EEGAVPVLVQSLTSSSNLAQENAA 350 (579)
Q Consensus 281 ~~~i~~~g~i~~Lv~ll~~---------~~~~~~~~a~~aL~nLs~~~~~~~~l~-~~g~v~~Lv~lL~~~~~~v~~~a~ 350 (579)
...|.+.||+..|+.+|.. .+...+..++.||+.+..+......+. ..+++..++..+.+.+..++..++
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 4477788999999998762 345788999999999999887777766 578999999999999999999999
Q ss_pred HHHHHHh
Q 047123 351 DCIATLA 357 (579)
Q Consensus 351 ~~L~~La 357 (579)
..|..+|
T Consensus 180 eiL~~lc 186 (187)
T PF06371_consen 180 EILAALC 186 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998876
No 196
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=91.83 E-value=1 Score=40.58 Aligned_cols=146 Identities=14% Similarity=0.151 Sum_probs=93.9
Q ss_pred HHHHHHhc--CCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 047123 291 SVLIEAFR--SGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLII 368 (579)
Q Consensus 291 ~~Lv~ll~--~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~ 368 (579)
..++..+. ..+++++..+.-++..+- +..++...+ -.-+.+-..+..++.+-...+..++..+=...++....+.
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~ 82 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF 82 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH
Confidence 33444443 356677888888887763 333333322 1122233334444444667777788877666666555554
Q ss_pred -hcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcC-CHH-HHHHHHHHHHH
Q 047123 369 -QERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRG-NVL-LQQVSSSLLGN 441 (579)
Q Consensus 369 -~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~-~~~-v~~~A~~aL~~ 441 (579)
.+|..+.++.++.....+...+..++.+|..=|..+.+...+.. .+++.|-+.++.. +.. ++..|+-.|..
T Consensus 83 ~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~--~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 83 LSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK--NYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH--HCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH--HHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 68999999999884444458889999999988888766666666 6999999999644 455 67777777654
No 197
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.43 E-value=0.32 Score=30.43 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=16.3
Q ss_pred HHHHHHhccCCCCHhHHHHHHHHHHHhh
Q 047123 456 MGSLIKLMECPKPVGLQEAATDAVLSLL 483 (579)
Q Consensus 456 v~~Lv~lL~~~~~~~v~~~a~~aL~~L~ 483 (579)
+|.+++++ .+++++||..|+.+|+.++
T Consensus 2 lp~l~~~l-~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLL-NDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHH-T-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence 35566666 5556666666666666655
No 198
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=91.32 E-value=1.9 Score=48.47 Aligned_cols=185 Identities=17% Similarity=0.199 Sum_probs=116.3
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHhhccChhh-------------HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 047123 207 GYLISLLDFHHQSSIREQAVLALSIIVSANDES-------------RKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEA 273 (579)
Q Consensus 207 ~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~-------------~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~ 273 (579)
..|+.+|+ . +++-..++.++.-+..+.+.. |+.++ ...+|.|++.....+...+..-..+|.+
T Consensus 818 ~klld~Ls-~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 818 EKLLDLLS-G--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHhcC-C--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHHH
Confidence 34555555 3 445556666666665533332 22222 2467888888887777788888888888
Q ss_pred hcCCCccHHHHHh-cCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhcCCC---HHHHHH
Q 047123 274 ITTDPENAWAISA-YGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSS---NLAQEN 348 (579)
Q Consensus 274 Ls~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~~~~---~~v~~~ 348 (579)
.-.+-+....+-+ ....|.|++.+.-.|..+|..+..++.-+.. .+.....- -...||.++.+=.+.+ ..+++.
T Consensus 894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~-~~Tlvp~lLsls~~~~n~~~~VR~~ 972 (1030)
T KOG1967|consen 894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEH-LSTLVPYLLSLSSDNDNNMMVVRED 972 (1030)
T ss_pred HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHH-HhHHHHHHHhcCCCCCcchhHHHHH
Confidence 7654333322222 3467888888888999999899888866543 22211111 1124566555544433 579999
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123 349 AADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAIS 398 (579)
Q Consensus 349 a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~ 398 (579)
|+.||..|+..-|..+-.-.+..+++.|...|++... .+|+.|+++=.
T Consensus 973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKR--lVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKR--LVRKEAVDTRQ 1020 (1030)
T ss_pred HHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHH--HHHHHHHHHhh
Confidence 9999999998554433344456677888888877665 67888776543
No 199
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=91.27 E-value=0.37 Score=42.78 Aligned_cols=75 Identities=19% Similarity=0.230 Sum_probs=65.0
Q ss_pred HHHHHHHHhhhhcccccchhhhhhHHHHHHHhhhhccccccCCCCCCCChhHHhHHHHHHHHHHHHHHHHHhccCC
Q 047123 29 LITNILSLLLLSSLTVRSFVGRWQILRTKLVSLQSSLSSISDSPHWSENPLLHTLLPSLLSTLQRLKALSDQCTLS 104 (579)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~l~~~c~~~ 104 (579)
.+..+.+.+..++..+..|+.-...+.+.++.+.+...++-......++|- ++-+..+.++|++|..|+++|..-
T Consensus 14 ~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~-~ee~e~L~~~L~~g~~LV~k~sk~ 88 (147)
T PF05659_consen 14 VFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPR-QEEIERLKELLEKGKELVEKCSKV 88 (147)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCch-hHHHHHHHHHHHHHHHHHHHhccc
Confidence 344556667778889999999999999999999999999887777788887 889999999999999999999764
No 200
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=91.21 E-value=0.32 Score=46.14 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHcccc-h---hHHHHHhhcCcHHHHHHHHHhc---------------CCHHHHHHHHHHHHHhcCChhh
Q 047123 388 VTVENALLAISSLSLS-D---SAARILSSTTSFIIQLGEFIKR---------------GNVLLQQVSSSLLGNLSISDGN 448 (579)
Q Consensus 388 ~~~~~A~~aL~~L~~~-~---~~~~l~~~~~g~i~~L~~lL~~---------------~~~~v~~~A~~aL~~L~~~~~~ 448 (579)
.++++|.-.|.|++.. + .-+.+.- -++.-|+++.-. ..-..|..|..+|+.|+..+.|
T Consensus 81 ~lREnalV~laNisgqLdLs~~~e~I~~---PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~N 157 (257)
T PF12031_consen 81 QLRENALVTLANISGQLDLSDYPESIAR---PILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENN 157 (257)
T ss_pred HHhhcceEeeeeeeeeeecccCchHHHH---HHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccC
Confidence 6788888888888875 1 1111111 123334444311 1236789999999999965555
Q ss_pred HHHHHHH---------HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchh-HHHhhcccHHHHHhhcCCCchh
Q 047123 449 KRAVASC---------MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRK-ELVRDEKSVMRLMQMLDPKNEA 512 (579)
Q Consensus 449 ~~~i~~~---------v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~-~~~~~~~~i~~Lv~lL~~~~~~ 512 (579)
...+..+ +..|++++...++...||.|...|.+|+..++... .+..+.+.|..|+..++..+..
T Consensus 158 VDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~~ 231 (257)
T PF12031_consen 158 VDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQN 231 (257)
T ss_pred cceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 5444333 77888888777889999999999999998876644 4555577899999999866544
No 201
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.78 E-value=1.1 Score=49.79 Aligned_cols=206 Identities=16% Similarity=0.168 Sum_probs=132.0
Q ss_pred hhhHHHHHhcCCHHHHHHHHccC------CHHHHHHHHHHHHHhc--------CCCccHHHHHhcCcHHHHHHHhcCC--
Q 047123 237 DESRKIVFEEGGLGPLLRILETG------SMPLKEKAAIGVEAIT--------TDPENAWAISAYGGVSVLIEAFRSG-- 300 (579)
Q Consensus 237 ~~~~~~i~~~g~l~~Lv~lL~~~------~~~v~~~aa~~L~~Ls--------~~~~~~~~i~~~g~i~~Lv~ll~~~-- 300 (579)
+.+++.-+..|+.+..+.-+..+ +.+..+..++-+..+- ..-+....+.+.+++..+++++.-.
T Consensus 536 e~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~ 615 (1516)
T KOG1832|consen 536 ESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPV 615 (1516)
T ss_pred HhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCcc
Confidence 44466666666666666644443 3344555555555443 1234566788889999999998742
Q ss_pred ------CHHHHHHHHHHHHHhhcChhhHHHHHHc--------CCHHHHHHHhc----CCCHHHHHHHHHHHHHHhcCChh
Q 047123 301 ------TALTQSHAVGAIRNIAAVEDIKAALAEE--------GAVPVLVQSLT----SSSNLAQENAADCIATLAASGEY 362 (579)
Q Consensus 301 ------~~~~~~~a~~aL~nLs~~~~~~~~l~~~--------g~v~~Lv~lL~----~~~~~v~~~a~~~L~~La~~~~~ 362 (579)
..++..+|+.+|.-+...|.++.++++. .++..++..-. -.+++++..|+.++.|+....+.
T Consensus 616 w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~ 695 (1516)
T KOG1832|consen 616 WRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPT 695 (1516)
T ss_pred ccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCC
Confidence 2357788999998888899998887742 13444333221 12789999999999999887766
Q ss_pred hHHHHHh-cCc---HHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCH-----HHHH
Q 047123 363 FRLLIIQ-ERG---LQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNV-----LLQQ 433 (579)
Q Consensus 363 ~r~~l~~-~g~---i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~-----~v~~ 433 (579)
.|...+. -|. -+. ..+..++. ....++..+-.|+-... +++|..|+++|+...| .++.
T Consensus 696 ~r~s~i~~v~S~~g~~r--~~l~~~~k-s~~le~~l~~mw~~Vr~----------ndGIkiLl~Ll~~k~P~t~aD~IRa 762 (1516)
T KOG1832|consen 696 TRPSTIVAVGSQSGDRR--IFLGAGTK-SAKLEQVLRQMWEAVRG----------NDGIKILLKLLQYKNPPTTADCIRA 762 (1516)
T ss_pred cchhhhhhccccCCCcc--ccccCCCc-hHHHHHHHHHHHHHHhc----------CccHHHHHHHHhccCCCCcHHHHHH
Confidence 5544322 111 010 01222221 23445666666654332 2789999999976533 6888
Q ss_pred HHHHHHHHhcCChhhHHHHHHH
Q 047123 434 VSSSLLGNLSISDGNKRAVASC 455 (579)
Q Consensus 434 ~A~~aL~~L~~~~~~~~~i~~~ 455 (579)
.|+.+|.-|+.+++.|+.+..-
T Consensus 763 lAc~~L~GLaR~~tVrQIltKL 784 (1516)
T KOG1832|consen 763 LACRVLLGLARDDTVRQILTKL 784 (1516)
T ss_pred HHHHHHhccccCcHHHHHHHhC
Confidence 9999999999999999887764
No 202
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=90.36 E-value=14 Score=38.72 Aligned_cols=167 Identities=12% Similarity=0.133 Sum_probs=100.9
Q ss_pred HHHHHHHHHH-hcCCCccHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCC
Q 047123 264 KEKAAIGVEA-ITTDPENAWAISAYGGVSVLIEAFRS-GTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSS 341 (579)
Q Consensus 264 ~~~aa~~L~~-Ls~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~ 341 (579)
+..|..-|.. ++......|.=.-..++..+++.+.+ .+...++.|+++|..++.+...+..-..+=+|..+++.-.+.
T Consensus 304 ~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds 383 (516)
T KOG2956|consen 304 RKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDS 383 (516)
T ss_pred HHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCC
Confidence 4444443333 33455555554444566778888887 677889999999999988655544333333555555555555
Q ss_pred CHHHHHHHH-HHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc---hhHHHHHhhcCcHH
Q 047123 342 SNLAQENAA-DCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS---DSAARILSSTTSFI 417 (579)
Q Consensus 342 ~~~v~~~a~-~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~---~~~~~l~~~~~g~i 417 (579)
.+.+...|. .|+.-++..++.. .|..+..++.+.+. ..-..++..+..++.. +.-..++. .+.
T Consensus 384 ~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~--~~~~~~iKm~Tkl~e~l~~EeL~~ll~---dia 450 (516)
T KOG2956|consen 384 QDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADE--PRAVAVIKMLTKLFERLSAEELLNLLP---DIA 450 (516)
T ss_pred chhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcc--hHHHHHHHHHHHHHhhcCHHHHHHhhh---hhh
Confidence 554444444 4455556655532 23334444444333 4444555566666666 22333333 689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123 418 IQLGEFIKRGNVLLQQVSSSLLGNLS 443 (579)
Q Consensus 418 ~~L~~lL~~~~~~v~~~A~~aL~~L~ 443 (579)
|++++...+.+..||..|...|..+.
T Consensus 451 P~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 451 PCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 99999999999999998888877664
No 203
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.33 E-value=14 Score=39.11 Aligned_cols=203 Identities=14% Similarity=0.079 Sum_probs=115.2
Q ss_pred CHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHh-cCCCHHHHHHHH----HHHHHhhc-Chh
Q 047123 248 GLGPLLRILETG-SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAF-RSGTALTQSHAV----GAIRNIAA-VED 320 (579)
Q Consensus 248 ~l~~Lv~lL~~~-~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll-~~~~~~~~~~a~----~aL~nLs~-~~~ 320 (579)
.+..++.+..+. +...+..++.+++.|...-..-..+ ...+..+..-. ...+...+..+. |+...+.. .+.
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~ 267 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDL--DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP 267 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc
Confidence 455566665443 5777888888888887421111100 12233333333 222333333333 34333322 221
Q ss_pred hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh--------HHHHHh----cCcHHHHHHhhccCCCChH
Q 047123 321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF--------RLLIIQ----ERGLQRLMHLIQDSTSSIV 388 (579)
Q Consensus 321 ~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~--------r~~l~~----~g~i~~Lv~ll~~~~~~~~ 388 (579)
.-. ..+..|+.++.+ +.+...++..+.-+..+.+.+ -+.+.+ .-.+|.|++..+..+. .
T Consensus 268 ~~~-----~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~--~ 338 (415)
T PF12460_consen 268 LAT-----ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD--E 338 (415)
T ss_pred hHH-----HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh--h
Confidence 111 135567777766 567788888888887763331 112222 2345777777666665 5
Q ss_pred HHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHH
Q 047123 389 TVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIK 461 (579)
Q Consensus 389 ~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~ 461 (579)
.+.....+|.++..+--...+...-+..+|.|++-|...+.+++..+..+|..+. .+++.-..-.+. |+.|++
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 7888888999988871122222222247888999999999999999999999998 444433322222 555554
No 204
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=90.13 E-value=23 Score=37.27 Aligned_cols=128 Identities=23% Similarity=0.259 Sum_probs=91.9
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHhhccChh----hHHHHHhcCCHHHHHHHHccC-------CHHHHHHHHHHHHHhcCC
Q 047123 209 LISLLDFHHQSSIREQAVLALSIIVSANDE----SRKIVFEEGGLGPLLRILETG-------SMPLKEKAAIGVEAITTD 277 (579)
Q Consensus 209 Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~----~~~~i~~~g~l~~Lv~lL~~~-------~~~v~~~aa~~L~~Ls~~ 277 (579)
+..+++ ..+...|-.|+-.+..+.. +++ +++.++++=|.+-+-++|.+. +...+.-+...|.-.+..
T Consensus 16 ~~~L~~-~k~D~e~fAaLllVTK~vK-~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 16 CLKLLK-GKRDEERFAALLLVTKFVK-NDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred HHHHhc-ccChHHHHHHHHHHHHHhc-ccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 445555 5566667777777777777 443 467788888888888888764 233456666777777877
Q ss_pred CccHHHHHhcCcHHHHHHHhcCC-CHH------HHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHh
Q 047123 278 PENAWAISAYGGVSVLIEAFRSG-TAL------TQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSL 338 (579)
Q Consensus 278 ~~~~~~i~~~g~i~~Lv~ll~~~-~~~------~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL 338 (579)
++....---.+.||.|.+++..+ |++ +.+.+-.+|..++..+.....++..|+++.+.++.
T Consensus 94 pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y 161 (698)
T KOG2611|consen 94 PELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMY 161 (698)
T ss_pred hhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHH
Confidence 76432222235678898888753 333 77888899999999999999999999999998775
No 205
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.95 E-value=7.2 Score=45.27 Aligned_cols=140 Identities=14% Similarity=0.175 Sum_probs=104.3
Q ss_pred cHHHHHHhhc---cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhcCC-Cc
Q 047123 205 NVGYLISLLD---FHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILE-TGSMPLKEKAAIGVEAITTD-PE 279 (579)
Q Consensus 205 ~v~~Lv~LL~---~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~-~~~~~v~~~aa~~L~~Ls~~-~~ 279 (579)
+.|.+++..+ ..++|++|..|.-+|+.+..-+.+.. +.-+|.|+.+|. ++++.+|.++..+++.|+.. |.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 4566666663 14579999999999997765232222 234889999998 67899999999999999843 22
Q ss_pred cHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123 280 NAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA 358 (579)
Q Consensus 280 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~ 358 (579)
..+. .-+.|..-+.+.++.+++.|..+|.+|-.++- +--.|.+..+..++.++++.++..|-.....|+.
T Consensus 995 lie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILndm----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 995 LIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILNDM----IKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh----hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 2222 22567778889999999999999999977543 3356889999999999999998888877666664
No 206
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.82 E-value=6.6 Score=43.31 Aligned_cols=157 Identities=12% Similarity=0.028 Sum_probs=98.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHh-hcChhhHHHHHHcCCHHHHHHH-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc
Q 047123 295 EAFRSGTALTQSHAVGAIRNI-AAVEDIKAALAEEGAVPVLVQS-LTSSSNLAQENAADCIATLAASGEYFRLLIIQERG 372 (579)
Q Consensus 295 ~ll~~~~~~~~~~a~~aL~nL-s~~~~~~~~l~~~g~v~~Lv~l-L~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~ 372 (579)
+++.+.|+-++.....++.-- +.. ...++|..|++. +++.+.+|+..|+-+|+-++..+++.
T Consensus 526 el~~dkdpilR~~Gm~t~alAy~GT-------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~--------- 589 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLALAYVGT-------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ--------- 589 (929)
T ss_pred HHhcCCchhhhhhhHHHHHHHHhcc-------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------
Confidence 466667776666665554321 111 123467777777 57889999999999999988877652
Q ss_pred HHHHHHhhc-cCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhh
Q 047123 373 LQRLMHLIQ-DSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGN 448 (579)
Q Consensus 373 i~~Lv~ll~-~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~ 448 (579)
++..+++|. +.++ .+|--++.+|.-.|.+ ... .++..|-.+..+...-||+.|+-++.-+. +++..
T Consensus 590 ~~s~V~lLses~N~--HVRyGaA~ALGIaCAGtG~~--------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~ 659 (929)
T KOG2062|consen 590 LPSTVSLLSESYNP--HVRYGAAMALGIACAGTGLK--------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQL 659 (929)
T ss_pred chHHHHHHhhhcCh--hhhhhHHHHHhhhhcCCCcH--------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhccccc
Confidence 555666654 4444 8999999999988877 221 12333333445556678888887777766 66665
Q ss_pred HHHHHHHHHHHHHhccCCCC--HhHHHHHHHH
Q 047123 449 KRAVASCMGSLIKLMECPKP--VGLQEAATDA 478 (579)
Q Consensus 449 ~~~i~~~v~~Lv~lL~~~~~--~~v~~~a~~a 478 (579)
...+..-...+.+++ ..++ ..++..|+-+
T Consensus 660 ~pkv~~frk~l~kvI-~dKhEd~~aK~GAilA 690 (929)
T KOG2062|consen 660 CPKVNGFRKQLEKVI-NDKHEDGMAKFGAILA 690 (929)
T ss_pred CchHHHHHHHHHHHh-hhhhhHHHHHHHHHHH
Confidence 555554456677766 4433 3334444433
No 207
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=89.56 E-value=30 Score=36.44 Aligned_cols=183 Identities=14% Similarity=0.185 Sum_probs=117.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcCCC----ccHHHHHhcCcHHHHHHHhcCC-------CHHHHHHHHHHHHHhhcChh
Q 047123 252 LLRILETGSMPLKEKAAIGVEAITTDP----ENAWAISAYGGVSVLIEAFRSG-------TALTQSHAVGAIRNIAAVED 320 (579)
Q Consensus 252 Lv~lL~~~~~~v~~~aa~~L~~Ls~~~----~~~~~i~~~g~i~~Lv~ll~~~-------~~~~~~~a~~aL~nLs~~~~ 320 (579)
+..+++..+.+-|-.+.-.+.++..+. .++..+.+.-|.+-+-.++.++ +...+..++.+|...|..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 555666666666777777777888544 3566677766667777777642 22456667777888888776
Q ss_pred h--HHHHHHcCCHHHHHHHhcCC-CH------HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHH
Q 047123 321 I--KAALAEEGAVPVLVQSLTSS-SN------LAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVE 391 (579)
Q Consensus 321 ~--~~~l~~~g~v~~Lv~lL~~~-~~------~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~ 391 (579)
. ...+++ .||.+...+..+ ++ .+.+.+-.||...+... .....++..|+++.+-++-...+. ..-+.
T Consensus 96 lAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e-~G~~~Lia~G~~~~~~Q~y~~~~~-~~d~a 171 (698)
T KOG2611|consen 96 LASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAE-AGLMTLIASGGLRVIAQMYELPDG-SHDMA 171 (698)
T ss_pred hccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCC-chhHHHHhcCchHHHHHHHhCCCC-chhHH
Confidence 5 344554 689999888543 23 38889999999999875 457888899999999886554443 13344
Q ss_pred HHHHHHHHcccc-----hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 047123 392 NALLAISSLSLS-----DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNL 442 (579)
Q Consensus 392 ~A~~aL~~L~~~-----~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L 442 (579)
.+..++.-+.+. +....+.. .+..+..-+...+...+.+.+.+|..+
T Consensus 172 lal~Vlll~~~~~~cw~e~~~~fla----li~~va~df~~~~~a~KfElc~lL~~v 223 (698)
T KOG2611|consen 172 LALKVLLLLVSKLDCWSETIERFLA----LIAAVARDFAVLHNALKFELCHLLSAV 223 (698)
T ss_pred HHHHHHHHHHHhcccCcCCHHHHHH----HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444433 22222221 234444445566777788888887744
No 208
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=89.46 E-value=2.4 Score=32.62 Aligned_cols=67 Identities=21% Similarity=0.215 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcC
Q 047123 179 KKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEG 247 (579)
Q Consensus 179 ~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g 247 (579)
...|+.+++++++ .+.....+.+.+.++.++++.+.++...+|-.|..+|+.++. ..+..+.+.+.|
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 4678999999986 445566666789999999998856779999999999999999 888888877665
No 209
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=89.19 E-value=2.1 Score=32.97 Aligned_cols=66 Identities=14% Similarity=0.093 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcChhhHHHHHHcC
Q 047123 264 KEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRS-GTALTQSHAVGAIRNIAAVEDIKAALAEEG 329 (579)
Q Consensus 264 ~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g 329 (579)
...+.+++.+++..+.....+-+.+.++.++++..+ +...+|-.+.++|.-++...+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 467899999999988888888888999999998875 455899999999999999988887776655
No 210
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=89.16 E-value=0.87 Score=43.33 Aligned_cols=94 Identities=18% Similarity=0.275 Sum_probs=74.0
Q ss_pred HhHHHHHHHHHHHhhcCCcchhHHHh------hcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCc
Q 047123 469 VGLQEAATDAVLSLLTVRSNRKELVR------DEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGA 542 (579)
Q Consensus 469 ~~v~~~a~~aL~~L~~~~~~~~~~~~------~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~ 542 (579)
..-|..|.++|+.|+..+.|.-.++. -+.-+..|+++|..++..+.+++++..|.+|+..+..-+|..-.+.+.
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 34588999999999988777554432 244556788888888878899999999999999887667777778999
Q ss_pred hHHHHhhhccCCchHHHHHH
Q 047123 543 YQHLQKLAETEVPGAKKVLQ 562 (579)
Q Consensus 543 ~~~L~~L~~~~~~~ak~~~~ 562 (579)
+.+|+..++..+..+.....
T Consensus 218 i~~Li~FiE~a~~~~~~~~~ 237 (257)
T PF12031_consen 218 ISHLIAFIEDAEQNAHQVAS 237 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999888766555444
No 211
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=88.49 E-value=6.4 Score=38.85 Aligned_cols=154 Identities=12% Similarity=0.052 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhhccChhhHHHHHhcC--CHHHHHHHHcc----CCHHHHHHHHHHHHHhcCCCccHHHHHhcC--cHHHH
Q 047123 222 REQAVLALSIIVSANDESRKIVFEEG--GLGPLLRILET----GSMPLKEKAAIGVEAITTDPENAWAISAYG--GVSVL 293 (579)
Q Consensus 222 ~~~A~~aL~~La~~~~~~~~~i~~~g--~l~~Lv~lL~~----~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g--~i~~L 293 (579)
+--++..++.+.. ++.....+...+ ....+..++.. .++..+..++++++|+-.++..+..+..+. .+-..
T Consensus 80 ~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~ 158 (268)
T PF08324_consen 80 RFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILEL 158 (268)
T ss_dssp -HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHH
T ss_pred chhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHH
Confidence 5556667777777 777766665443 34555555544 367889999999999998888888777644 34444
Q ss_pred HHHhcCC----CHHHHHHHHHHHHHhhcC--hhhHHHHHHcCCHHHHHHHhc-C-CCHHHHHHHHHHHHHHhcCChhhHH
Q 047123 294 IEAFRSG----TALTQSHAVGAIRNIAAV--EDIKAALAEEGAVPVLVQSLT-S-SSNLAQENAADCIATLAASGEYFRL 365 (579)
Q Consensus 294 v~ll~~~----~~~~~~~a~~aL~nLs~~--~~~~~~l~~~g~v~~Lv~lL~-~-~~~~v~~~a~~~L~~La~~~~~~r~ 365 (579)
+..+... +..++..++..+.|++.. ......-.....+..+++.+. . .++++...++-+|+++...++..+.
T Consensus 159 ~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~ 238 (268)
T PF08324_consen 159 LSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQ 238 (268)
T ss_dssp CHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHH
Confidence 4434343 678899999999999752 111000001113445555332 2 5889999999999999977655433
Q ss_pred HHHhcCcHHHH
Q 047123 366 LIIQERGLQRL 376 (579)
Q Consensus 366 ~l~~~g~i~~L 376 (579)
.....|+-..+
T Consensus 239 ~~~~l~~~~~~ 249 (268)
T PF08324_consen 239 LAKSLDVKSVL 249 (268)
T ss_dssp HCCCCTHHHHH
T ss_pred HHHHcChHHHH
Confidence 33333433333
No 212
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=88.21 E-value=26 Score=33.86 Aligned_cols=137 Identities=20% Similarity=0.194 Sum_probs=84.3
Q ss_pred HHHHHH-hhccCCCHHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHH
Q 047123 206 VGYLIS-LLDFHHQSSIREQAVLALSIIVSAND-ESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWA 283 (579)
Q Consensus 206 v~~Lv~-LL~~~~~~~~~~~A~~aL~~La~~~~-~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~ 283 (579)
++.|+. +-+ ..++..+...+.+|..++. ++ .+...+ +..|..+.+.+....+..+.+.+..+-...+-..
T Consensus 2 l~~L~~~l~~-~~~~~~~~~~L~~L~~l~~-~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f- 73 (234)
T PF12530_consen 2 LPLLLYKLGK-ISDPELQLPLLEALPSLAC-HKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF- 73 (234)
T ss_pred hHHHHHHhcC-CCChHHHHHHHHHHHHHhc-cCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-
Confidence 344444 344 7789999999999999998 55 443333 4555556666667766666666666664322111
Q ss_pred HHhcCcHHHHHHH--hc------CC--CHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHh-cCCCHHHHHHHHHH
Q 047123 284 ISAYGGVSVLIEA--FR------SG--TALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSL-TSSSNLAQENAADC 352 (579)
Q Consensus 284 i~~~g~i~~Lv~l--l~------~~--~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL-~~~~~~v~~~a~~~ 352 (579)
+.++.++.. ++ ++ ..+.......++..++...+.+. ...++.+..++ ++.++.++..++..
T Consensus 74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g----~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG----VDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH----HHHHHHHHHHHhccccHHHHHHHHHH
Confidence 344444443 11 11 22344444566777766333311 12567777888 78888899999999
Q ss_pred HHHHhc
Q 047123 353 IATLAA 358 (579)
Q Consensus 353 L~~La~ 358 (579)
|..++.
T Consensus 146 l~~Lc~ 151 (234)
T PF12530_consen 146 LAPLCE 151 (234)
T ss_pred HHHHHH
Confidence 999984
No 213
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.93 E-value=51 Score=36.98 Aligned_cols=67 Identities=22% Similarity=0.200 Sum_probs=47.3
Q ss_pred CCHHHHHHHHc----cCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 047123 247 GGLGPLLRILE----TGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA 317 (579)
Q Consensus 247 g~l~~Lv~lL~----~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~ 317 (579)
.+..++...++ +....+...+++++.+|.... -..+. ..+..|--+|.+....+|..|.++|..++.
T Consensus 241 ~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~--~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm 311 (865)
T KOG1078|consen 241 QADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTN--SRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAM 311 (865)
T ss_pred cchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccC--Hhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 34555555554 346778889999999887421 11121 266778888888889999999999988876
No 214
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=87.70 E-value=6 Score=35.96 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHH--hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc
Q 047123 157 KQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVA--KEGNVGYLISLLDFHHQSSIREQAVLALSIIVS 234 (579)
Q Consensus 157 ~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~--~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~ 234 (579)
......++..+.++|++++++.|..++..+...+..++ ...+. ....+..|+..|+....+.+.+.++.+|..|..
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 45566678888999999999999999988888886543 23332 244688888999833447788888888887754
Q ss_pred ---cChhhHHHHHhc---CCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 047123 235 ---ANDESRKIVFEE---GGLGPLLRILETGSMPLKEKAAIGVEAIT 275 (579)
Q Consensus 235 ---~~~~~~~~i~~~---g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls 275 (579)
+.++....+... +.++.++++++. ....+.+..+|..+-
T Consensus 98 ~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 98 LIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred HhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 244444444322 345555555553 345556666666654
No 215
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=87.44 E-value=4.1 Score=35.97 Aligned_cols=73 Identities=16% Similarity=0.119 Sum_probs=62.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc
Q 047123 162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKD-DDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVS 234 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~ 234 (579)
..++.+..+|+++++.++..|+..|-.+.+. .+.....+.+.+++..|++++....++.+++.++..+..-+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999988888775 456777788999999999999734668999999999887775
No 216
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=87.12 E-value=22 Score=40.71 Aligned_cols=177 Identities=16% Similarity=0.110 Sum_probs=113.1
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCC---HHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 047123 296 AFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGA---VPVLVQSL-TSSSNLAQENAADCIATLAASGEYFRLLIIQER 371 (579)
Q Consensus 296 ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~---v~~Lv~lL-~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g 371 (579)
-+.+.+..-+..++..+........ .....+. +-.++... .+.+..+...++.+|..++..-... ..=...+
T Consensus 261 ~~~s~~WK~R~Eale~l~~~l~e~~---~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~~~~ 336 (815)
T KOG1820|consen 261 EMLSKKWKDRKEALEELVAILEEAK---KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKYAKN 336 (815)
T ss_pred hhhccchHHHHHHHHHHHHHHhccc---cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHHHHh
Confidence 3445666667777766665544333 1122233 33333332 4557788888999999888643221 1111245
Q ss_pred cHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCh---h
Q 047123 372 GLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISD---G 447 (579)
Q Consensus 372 ~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~---~ 447 (579)
..+.++..+..... .++..+..++...+..... . ...+.+..++.++++..+......+.... ..+ .
T Consensus 337 v~p~lld~lkekk~--~l~d~l~~~~d~~~ns~~l-----~--~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 337 VFPSLLDRLKEKKS--ELRDALLKALDAILNSTPL-----S--KMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred hcchHHHHhhhccH--HHHHHHHHHHHHHHhcccH-----H--HHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 56777777776655 7777777777766653111 1 35666778899999999988777776666 222 2
Q ss_pred hHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCC
Q 047123 448 NKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVR 486 (579)
Q Consensus 448 ~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~ 486 (579)
.+..+...++.++... ++.+.+||.+|.+++..+...+
T Consensus 408 ~~~t~~~l~p~~~~~~-~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHI-NDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred chhhHHHHhHHHhhhc-cCCcHHHHHHHHHHHHHHHHHh
Confidence 3334444489999999 7788999999999999998754
No 217
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=86.74 E-value=34 Score=33.66 Aligned_cols=173 Identities=13% Similarity=0.183 Sum_probs=99.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcChh--------hHHHHHHcCCHHHHHHHhcCCC----HHHHHHHHHHHHHHhc
Q 047123 291 SVLIEAFRSGTALTQSHAVGAIRNIAAVED--------IKAALAEEGAVPVLVQSLTSSS----NLAQENAADCIATLAA 358 (579)
Q Consensus 291 ~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~--------~~~~l~~~g~v~~Lv~lL~~~~----~~v~~~a~~~L~~La~ 358 (579)
+.+++-+.+.. ..+.+...|..++..+. .|-.+.=.+.+|.++.-+.+++ ......++..|+.+|.
T Consensus 67 ~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~ 144 (262)
T PF14225_consen 67 PLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAE 144 (262)
T ss_pred HHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHH
Confidence 33334444433 36677778877765332 2333333445666666666665 2344566677787774
Q ss_pred CChhhHHHHHhcCcHHHHHH-hhccCCC-ChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHH
Q 047123 359 SGEYFRLLIIQERGLQRLMH-LIQDSTS-SIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSS 436 (579)
Q Consensus 359 ~~~~~r~~l~~~g~i~~Lv~-ll~~~~~-~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~ 436 (579)
... ...+..++. +.+..-. +.+-...++..|+.-...+ .+. ..+..|+.+|.++.+.+|....
T Consensus 145 ~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~-----~~~--~~l~~Ll~lL~n~~~w~~~~~L 209 (262)
T PF14225_consen 145 AQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD-----HEF--QILTFLLGLLENGPPWLRRKTL 209 (262)
T ss_pred hCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch-----hHH--HHHHHHHHHHhCCcHHHHHHHH
Confidence 321 223443433 3332221 1223333333333221111 111 4677799999999999999999
Q ss_pred HHHHHhcCChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhc
Q 047123 437 SLLGNLSISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLT 484 (579)
Q Consensus 437 ~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~ 484 (579)
.+|+.+-...+.++.++.. +.++.+++ .+ +....|.++|-+...
T Consensus 210 ~iL~~ll~~~d~~~~~~~dlispllrlL-~t---~~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 210 QILKVLLPHVDMRSPHGADLISPLLRLL-QT---DLWMEALEVLDEIVT 254 (262)
T ss_pred HHHHHHhccccCCCCcchHHHHHHHHHh-CC---ccHHHHHHHHHHHHh
Confidence 9999998666666655555 99999999 43 344566666666543
No 218
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=86.33 E-value=30 Score=37.97 Aligned_cols=166 Identities=15% Similarity=0.084 Sum_probs=91.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHh---cCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcC-c
Q 047123 340 SSSNLAQENAADCIATLAASGEYFRLLIIQ---ERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTT-S 415 (579)
Q Consensus 340 ~~~~~v~~~a~~~L~~La~~~~~~r~~l~~---~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~-g 415 (579)
.-..+++--|+.+|+.+.......-..+-. ...+..++..+. .++..+..++++|.|+-.+..-..++.+.. -
T Consensus 555 ~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~---~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~ 631 (745)
T KOG0301|consen 555 QWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN---ADPANQLLVVRCLANLFSNPAGRELFMSRLES 631 (745)
T ss_pred cCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc---cchhHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 344556666666666665543222111111 123334444333 223788899999999988733333333300 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHH-HHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhH
Q 047123 416 FIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKR-AVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKE 491 (579)
Q Consensus 416 ~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~-~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~ 491 (579)
.+..+.+.-...+..++...+....|++ ...++-+ ...+- ...+..+++..++.+.......||++|+..+....+
T Consensus 632 i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~ 711 (745)
T KOG0301|consen 632 ILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ 711 (745)
T ss_pred HhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH
Confidence 2222222223345677776666666676 1111111 11122 333444554455666788899999999998888887
Q ss_pred HHhhcccHHHHHhhcCCC
Q 047123 492 LVRDEKSVMRLMQMLDPK 509 (579)
Q Consensus 492 ~~~~~~~i~~Lv~lL~~~ 509 (579)
+.+ ...+..+.+-+.+.
T Consensus 712 ~A~-~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 712 LAK-NRSVDSIAKKLKEA 728 (745)
T ss_pred HHH-hcCHHHHHHHHHHh
Confidence 775 66777777766544
No 219
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.24 E-value=10 Score=37.66 Aligned_cols=141 Identities=16% Similarity=0.138 Sum_probs=99.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123 162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK 241 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~ 241 (579)
..+...+..|.+.+++.+.+++..|+.++...++...-... ..|..+++-++ .....+-..|+.++..|.. .+..
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslK-NlRS~VsraA~~t~~difs---~ln~ 162 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLK-NLRSAVSRAACMTLADIFS---SLNN 162 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhc-ChHHHHHHHHHHHHHHHHH---HHHH
Confidence 45778889999999999999999999998877765554443 34556666677 6677888888888888877 3333
Q ss_pred HHHhcCCHHHHHHHH-cc---CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 047123 242 IVFEEGGLGPLLRIL-ET---GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNI 315 (579)
Q Consensus 242 ~i~~~g~l~~Lv~lL-~~---~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL 315 (579)
.+.+ .+..++..| .. .+..+++.|-.+|..+..+-.-.. +++.|+..+++.++.++..++.+..+.
T Consensus 163 ~i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~------~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 163 SIDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK------LLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred HHHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH------HHHHHHHHHhhhchhhhhhhhcccccc
Confidence 4433 344444444 22 366789999999999885433222 457777788888888887777665443
No 220
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=85.76 E-value=33 Score=38.07 Aligned_cols=133 Identities=21% Similarity=0.190 Sum_probs=88.6
Q ss_pred HcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhH
Q 047123 327 EEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSA 406 (579)
Q Consensus 327 ~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~ 406 (579)
.+.++|.|..-+++.+..+|+.++..+...+..= -...++.-.++.+.++....+ +..++.+++-++..+... .
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~i---D~~~vk~~ilP~l~~l~~~tt-~~~vkvn~L~c~~~l~q~--l 460 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESI---DVPFVKQAILPRLKNLAFKTT-NLYVKVNVLPCLAGLIQR--L 460 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhc---cHHHHHHHHHHHhhcchhccc-chHHHHHHHHHHHHHHHH--H
Confidence 4456778888888889999999999998887632 234556667888888733333 357888999988888733 2
Q ss_pred HHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCCC
Q 047123 407 ARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPKP 468 (579)
Q Consensus 407 ~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~~ 468 (579)
+..... .-+.++..-.+..++.+......+..++. ........+.+. +|.++-+. ....
T Consensus 461 D~~~v~--d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls-~~~~ 521 (700)
T KOG2137|consen 461 DKAAVL--DELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLS-VAPS 521 (700)
T ss_pred HHHHhH--HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhh-hccc
Confidence 222111 34556666677789999988888888887 222223444455 66666666 4443
No 221
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=85.30 E-value=7.2 Score=35.22 Aligned_cols=144 Identities=15% Similarity=0.156 Sum_probs=76.9
Q ss_pred cHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHH
Q 047123 205 NVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAI 284 (579)
Q Consensus 205 ~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i 284 (579)
.++.|+++|+.+.+..+|..++++|+.|+. -+-++.+....+. +.-. -...+..... ..+.+.. .....+.+
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~~~k~~~~~~-~~~~--~~~~~~~~~~---~~l~~~~-~~~~~ee~ 82 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGA-LDPYKHKSIQKSL-DSKS--SENSNDESTD---ISLPMMG-ISPSSEEY 82 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcHHHhcccccC-Cccc--cccccccchh---hHHhhcc-CCCchHHH
Confidence 467788888844569999999999999988 5445444332211 0000 0000011111 1111111 11123334
Q ss_pred HhcCcHHHHHHHhcCCCH-HHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 047123 285 SAYGGVSVLIEAFRSGTA-LTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATL 356 (579)
Q Consensus 285 ~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L 356 (579)
.-..++..|+.++++.+- .-...++.++.++......+..-.-..++|.+++.+...++..++....-|..+
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444477888888887543 334456666666654322222111223788888888766667777666555554
No 222
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=85.28 E-value=15 Score=34.73 Aligned_cols=146 Identities=13% Similarity=0.092 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCC-----CHHHHHHHHHHHHHhhcCh--hhHHHHHHcCCHHHHHH
Q 047123 264 KEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSG-----TALTQSHAVGAIRNIAAVE--DIKAALAEEGAVPVLVQ 336 (579)
Q Consensus 264 ~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~-----~~~~~~~a~~aL~nLs~~~--~~~~~l~~~g~v~~Lv~ 336 (579)
..++...|.-++++|+.+..|.+..+--.|..++... ...++-.+++++..|..++ +....+....+||.+++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 4567777888899999999999877544444444422 2357888999999998743 45666777889999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHhcCChhhH---HHHHh----cCcHHHHHHhh-ccCCCChHHHHHHHHHHHHcccchhHHH
Q 047123 337 SLTSSSNLAQENAADCIATLAASGEYFR---LLIIQ----ERGLQRLMHLI-QDSTSSIVTVENALLAISSLSLSDSAAR 408 (579)
Q Consensus 337 lL~~~~~~v~~~a~~~L~~La~~~~~~r---~~l~~----~g~i~~Lv~ll-~~~~~~~~~~~~A~~aL~~L~~~~~~~~ 408 (579)
.+..+++..+..++..+..+..+|.... +.+-+ ...+..++..+ ..++. .+..++.++-..||..+..+.
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~--RLlKh~iRcYlRLsd~p~aR~ 274 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGST--RLLKHAIRCYLRLSDKPHARA 274 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccch--hHHHHHHHHheeecCCHhHHH
Confidence 9999999999999999998877665422 22211 22233344333 33333 788889988888888754444
Q ss_pred HHh
Q 047123 409 ILS 411 (579)
Q Consensus 409 l~~ 411 (579)
++.
T Consensus 275 lL~ 277 (315)
T COG5209 275 LLS 277 (315)
T ss_pred HHh
Confidence 443
No 223
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=85.27 E-value=11 Score=34.25 Aligned_cols=111 Identities=19% Similarity=0.169 Sum_probs=73.8
Q ss_pred cHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCC-HHHHHHHHHHHHHhc----CCh
Q 047123 372 GLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGN-VLLQQVSSSLLGNLS----ISD 446 (579)
Q Consensus 372 ~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~-~~v~~~A~~aL~~L~----~~~ 446 (579)
.+..+.+++.+.+. ..+..++..+..++....-+.+.+...-.+..++.+|+..+ ..+.+.+..++..|. ..+
T Consensus 26 l~~ri~~LL~s~~~--~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSA--YSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCCh--hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34566777777775 77888888888877763344454442245778888887754 466677777777765 566
Q ss_pred hhHHHHH-HH----HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCc
Q 047123 447 GNKRAVA-SC----MGSLIKLMECPKPVGLQEAATDAVLSLLTVRS 487 (579)
Q Consensus 447 ~~~~~i~-~~----v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~ 487 (579)
+..+.+. .. ++.+++++ +. ..+.+.+..+|..+...++
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~-~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLL-QD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHH-hc--cccHHHHHHHHHHHHHHCC
Confidence 6555543 33 66666677 22 5677888888888876543
No 224
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=85.25 E-value=69 Score=35.85 Aligned_cols=314 Identities=14% Similarity=0.067 Sum_probs=164.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccC-------CCHHHHHHHHHHHHHhhc-
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFH-------HQSSIREQAVLALSIIVS- 234 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~-------~~~~~~~~A~~aL~~La~- 234 (579)
+++.-...-..|... -..|+.++.-.....++. .-.|.++.++..|..+ .++.-.+.|++.+.++..
T Consensus 372 yirry~df~d~g~sp-dlaal~fl~~~~sKrke~----TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~ 446 (970)
T COG5656 372 YIRRYYDFFDNGLSP-DLAALFFLIISKSKRKEE----TFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSF 446 (970)
T ss_pred HHHHhcchhcCCCCh-hHHHHHHHHHHhcccchh----hhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHH
Confidence 455555555555321 134455554443322221 1357788888888311 134556677777776654
Q ss_pred -cChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 047123 235 -ANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIR 313 (579)
Q Consensus 235 -~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~ 313 (579)
..+.-..-+.+.=.++.++..+++...-.+..+|..+..+..+ -+..-.-..+.....+.+++.+-.++..|+.||.
T Consensus 447 itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq 524 (970)
T COG5656 447 ITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQ 524 (970)
T ss_pred hccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHH
Confidence 2333333444444577777788888889999999999999632 1111112234455566777777788999999998
Q ss_pred HhhcChhhHHHHHHcCCHHHHHHHh---cCCCHHHHHHHHHHHHH-HhcCChhhHHHHHh---cCcHHHHHHhhccCC--
Q 047123 314 NIAAVEDIKAALAEEGAVPVLVQSL---TSSSNLAQENAADCIAT-LAASGEYFRLLIIQ---ERGLQRLMHLIQDST-- 384 (579)
Q Consensus 314 nLs~~~~~~~~l~~~g~v~~Lv~lL---~~~~~~v~~~a~~~L~~-La~~~~~~r~~l~~---~g~i~~Lv~ll~~~~-- 384 (579)
-+-.+++....+.++ +.+.+-++| +.-+.++...+...+.. .+..=..+...+.+ ...+.....+++..+
T Consensus 525 ~fi~~~q~h~k~sah-Vp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~ 603 (970)
T COG5656 525 FFIFNEQSHEKFSAH-VPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDT 603 (970)
T ss_pred HHHhchhhhHHHHhh-hhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 877766665555442 222233333 22233333333332221 11100001111111 111222223333331
Q ss_pred --CChHHHHHHHHHHHHcccc----hhHH---HHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHH
Q 047123 385 --SSIVTVENALLAISSLSLS----DSAA---RILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVAS 454 (579)
Q Consensus 385 --~~~~~~~~A~~aL~~L~~~----~~~~---~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~ 454 (579)
..++-+..|.+.|..+..- +++. +-++. ...+..--.+.+.-.+.-.+|...+-+.+ .+.+....+..
T Consensus 604 ~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~--slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pimwg 681 (970)
T COG5656 604 SSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEV--SLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIMWG 681 (970)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhhhH
Confidence 1123455566666655442 2222 22222 34455555567777788888888888877 44444433333
Q ss_pred HHHHHHHhccCCCCHhHHHHHHHHHHHhhcCC
Q 047123 455 CMGSLIKLMECPKPVGLQEAATDAVLSLLTVR 486 (579)
Q Consensus 455 ~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~ 486 (579)
-.+.+.+++.+......-+...-+|.|+....
T Consensus 682 i~Ell~~~l~~~~t~~y~ee~~~al~nfityG 713 (970)
T COG5656 682 IFELLLNLLIDEITAVYSEEVADALDNFITYG 713 (970)
T ss_pred HHHHHHhcccccchhhhHHHHHHHHHHHHHhC
Confidence 36666667733333455677778888887653
No 225
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=84.97 E-value=64 Score=36.10 Aligned_cols=196 Identities=11% Similarity=0.044 Sum_probs=102.7
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcCC--CccHHHHHhcCcHHHHHHHhcC----CCHHHHHHHHHHHHHhhc----
Q 047123 248 GLGPLLRILETGSMPLKEKAAIGVEAITTD--PENAWAISAYGGVSVLIEAFRS----GTALTQSHAVGAIRNIAA---- 317 (579)
Q Consensus 248 ~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~a~~aL~nLs~---- 317 (579)
.+..+.+++.++...-. .++..|..|... ..... .+..+..++.+ .++.+...+..++..+..
T Consensus 396 av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRPTEE------LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT-S-HH-HHHHHHHHHHHT-----HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCCCHH------HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 45666677766533322 244555555421 22222 34666777764 345677777777766643
Q ss_pred Ch------hhHHHHHHcCCHHHHHHHhc----CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccC-CCC
Q 047123 318 VE------DIKAALAEEGAVPVLVQSLT----SSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDS-TSS 386 (579)
Q Consensus 318 ~~------~~~~~l~~~g~v~~Lv~lL~----~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~-~~~ 386 (579)
.. ......+....++.+...+. .++..-+..++.+|+|+.. ...++.+..++... ..+
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~~l~~~i~~~~~~~ 537 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIPVLLPYIEGKEEVP 537 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhHHHHhHhhhccccc
Confidence 21 11122223345566665554 4566778888899998854 23578888877776 333
Q ss_pred hHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhc--CCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhcc
Q 047123 387 IVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKR--GNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLME 464 (579)
Q Consensus 387 ~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~--~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~ 464 (579)
..++..|+.+|+.+.... .. .+.+.|+.++.+ .+.++|..|..+|...- |.... +..+...+.
T Consensus 538 ~~~R~~Ai~Alr~~~~~~-~~-------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~--P~~~~-----l~~i~~~l~ 602 (618)
T PF01347_consen 538 HFIRVAAIQALRRLAKHC-PE-------KVREILLPIFMNTTEDPEVRIAAYLILMRCN--PSPSV-----LQRIAQSLW 602 (618)
T ss_dssp HHHHHHHHHTTTTGGGT--HH-------HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT-----HHH-----HHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhhcC-cH-------HHHHHHHHHhcCCCCChhHHHHHHHHHHhcC--CCHHH-----HHHHHHHHh
Confidence 578888888888775441 11 244456666644 46688888877766542 22110 555566664
Q ss_pred CCCCHhHHHHHH
Q 047123 465 CPKPVGLQEAAT 476 (579)
Q Consensus 465 ~~~~~~v~~~a~ 476 (579)
..++..|.-...
T Consensus 603 ~E~~~QV~sfv~ 614 (618)
T PF01347_consen 603 NEPSNQVASFVY 614 (618)
T ss_dssp T-S-HHHHHHHH
T ss_pred hCchHHHHHHHH
Confidence 455555554443
No 226
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.65 E-value=72 Score=35.53 Aligned_cols=130 Identities=15% Similarity=0.005 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcC
Q 047123 261 MPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTS 340 (579)
Q Consensus 261 ~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~ 340 (579)
..+...++..+..+-..+..-. + -.|.+..++.-..+.+..++..++..|..+.....-....+-.+....+..-+.+
T Consensus 60 dRIl~fla~fv~sl~q~d~e~D-l-V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~D 137 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQLDKEED-L-VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKD 137 (892)
T ss_pred HHHHHHHHHHHHhhhccCchhh-H-HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhc
Confidence 3455555666666554332222 1 1345566666666788899999999999888743333333334556666666778
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123 341 SSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAIS 398 (579)
Q Consensus 341 ~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~ 398 (579)
..+.|+..|+.+|..+-.++.+ -+..++..+..+++.+++ ++++..|...|.
T Consensus 138 rep~VRiqAv~aLsrlQ~d~~d-----ee~~v~n~l~~liqnDpS-~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 138 REPNVRIQAVLALSRLQGDPKD-----EECPVVNLLKDLIQNDPS-DEVRRAALSNIS 189 (892)
T ss_pred cCchHHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHHhcCCc-HHHHHHHHHhhc
Confidence 8899999999999998643211 013456777778877665 678877655443
No 227
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=84.64 E-value=6.8 Score=34.67 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhccCh-hhHHHHHhhCcHHHHHHhhccC-CCHHHHHHHHHHHHHhhc
Q 047123 161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDD-KSAAVVAKEGNVGYLISLLDFH-HQSSIREQAVLALSIIVS 234 (579)
Q Consensus 161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~g~v~~Lv~LL~~~-~~~~~~~~A~~aL~~La~ 234 (579)
...++.+..+|+++++.++..|+..|-.+++... .....|...+++..|++++. . .++.+++..+..|...+.
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~-~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLIN-DRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999999988887444 45667889999999999998 5 789999999999988876
No 228
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=84.58 E-value=21 Score=38.50 Aligned_cols=107 Identities=12% Similarity=0.144 Sum_probs=78.1
Q ss_pred CcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCh
Q 047123 371 RGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS---ISD 446 (579)
Q Consensus 371 g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~---~~~ 446 (579)
|.+..+++.+++... .++..++..|.-+... ......+-. |.+..|.+-+-...+.|+.+|..+|+.+- .++
T Consensus 91 ~~~~h~lRg~eskdk--~VR~r~lqila~~~d~v~eIDe~l~N--~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne 166 (885)
T COG5218 91 GTFYHLLRGTESKDK--KVRKRSLQILALLSDVVREIDEVLAN--GLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE 166 (885)
T ss_pred HHHHHHHhcccCcch--hHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh
Confidence 445555555555555 8899999999988877 556666666 78888888888889999999999999886 445
Q ss_pred hhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcch
Q 047123 447 GNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNR 489 (579)
Q Consensus 447 ~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~ 489 (579)
+++. +..|+.+++++++.+||. .||.|+..+...+
T Consensus 167 en~~-----~n~l~~~vqnDPS~EVRr---~allni~vdnsT~ 201 (885)
T COG5218 167 ENRI-----VNLLKDIVQNDPSDEVRR---LALLNISVDNSTY 201 (885)
T ss_pred HHHH-----HHHHHHHHhcCcHHHHHH---HHHHHeeeCCCcc
Confidence 5442 456777777888899988 4567776654443
No 229
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=84.47 E-value=14 Score=40.73 Aligned_cols=252 Identities=11% Similarity=0.106 Sum_probs=138.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhc
Q 047123 167 IFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEE 246 (579)
Q Consensus 167 Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~ 246 (579)
.+.-++..+.+.+..=...|.+.. +..-..++..-.++.|+..+. .++ .....+..+..+.. .-...+ .+.
T Consensus 259 fLeel~lks~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~-~g~--a~~~~ltpl~k~~k-~ld~~e--yq~ 329 (690)
T KOG1243|consen 259 FLEELRLKSVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALE-FGD--AASDFLTPLFKLGK-DLDEEE--YQV 329 (690)
T ss_pred HHHhcccCcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhh-ccc--cchhhhhHHHHhhh-hccccc--ccc
Confidence 344555666666666555555532 233344555566777777766 444 11111222222222 111111 566
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHH
Q 047123 247 GGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALA 326 (579)
Q Consensus 247 g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~ 326 (579)
+++|.|+++++..+..+|..-..-+.+... .....+....+.+.+..-+.+.++.+++.++.++..|+.-=.-+ -.
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~--~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~L 405 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYID--HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NL 405 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhh--hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hh
Confidence 789999999999988888755554444332 23345566678899999999999999999999988776521111 01
Q ss_pred HcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc-HHHHHHhhccCCCChHHHHHHHHHHHHcccchh
Q 047123 327 EEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERG-LQRLMHLIQDSTSSIVTVENALLAISSLSLSDS 405 (579)
Q Consensus 327 ~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~-i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~ 405 (579)
....+..+-++-.+.+..++.+..-||..++..... .. +.+. +....+.+++.-. ..+..+..+++..+..-.
T Consensus 406 n~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~---~~-R~~vL~~aftralkdpf~--paR~a~v~~l~at~~~~~ 479 (690)
T KOG1243|consen 406 NGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAA---SV-RKRVLASAFTRALKDPFV--PARKAGVLALAATQEYFD 479 (690)
T ss_pred cHHHHHHHHhhCccccCcccccceeeecccccccch---hh-hccccchhhhhhhcCCCC--CchhhhhHHHhhcccccc
Confidence 111223333333344557888888888888764321 11 2232 3344444454443 567777777777666511
Q ss_pred HHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047123 406 AARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLG 440 (579)
Q Consensus 406 ~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~ 440 (579)
...+-. .+++.+.-+.-+.+..++..|-.++.
T Consensus 480 ~~~va~---kIlp~l~pl~vd~e~~vr~~a~~~i~ 511 (690)
T KOG1243|consen 480 QSEVAN---KILPSLVPLTVDPEKTVRDTAEKAIR 511 (690)
T ss_pred hhhhhh---hccccccccccCcccchhhHHHHHHH
Confidence 111111 24444444444555555555544443
No 230
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.14 E-value=6 Score=42.26 Aligned_cols=117 Identities=10% Similarity=0.099 Sum_probs=69.9
Q ss_pred CCHHHHHHH-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhc-cCCCChHHHHHHHHHHHHcccchhH
Q 047123 329 GAVPVLVQS-LTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQ-DSTSSIVTVENALLAISSLSLSDSA 406 (579)
Q Consensus 329 g~v~~Lv~l-L~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~-~~~~~~~~~~~A~~aL~~L~~~~~~ 406 (579)
|+|..++++ +++++++++..|+-+|.-.|..|.+ .+...+++|. +++. .++...+-+|.-.|.+..-
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~shN~--hVR~g~AvaLGiacag~G~ 619 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSESHNF--HVRAGVAVALGIACAGTGD 619 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhccch--hhhhhhHHHhhhhhcCCcc
Confidence 455555555 4566777777777777777665533 2444444443 3333 6776666677666655100
Q ss_pred HHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHhc
Q 047123 407 ARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASCMGSLIKLM 463 (579)
Q Consensus 407 ~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~v~~Lv~lL 463 (579)
+ -++..|-.+......-|++.|.-++.-+. ++++....+..-+..+.+++
T Consensus 620 ~-------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI 671 (926)
T COG5116 620 K-------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVI 671 (926)
T ss_pred H-------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHH
Confidence 0 13333444566677778888887777776 77776665555566677766
No 231
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=82.90 E-value=6.3 Score=38.88 Aligned_cols=150 Identities=20% Similarity=0.112 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcC--cHHHHHHhhccCC--CChHHHHHHHHHHHHcccc-hhHHHHHhhcC-cHH
Q 047123 344 LAQENAADCIATLAASGEYFRLLIIQER--GLQRLMHLIQDST--SSIVTVENALLAISSLSLS-DSAARILSSTT-SFI 417 (579)
Q Consensus 344 ~v~~~a~~~L~~La~~~~~~r~~l~~~g--~i~~Lv~ll~~~~--~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~-g~i 417 (579)
+-+--++..++-++... .....+...+ ....+..++.... ..+..+..+++++.|+-.. ..+..+..... .++
T Consensus 78 ~~~fP~lDLlRl~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~ 156 (268)
T PF08324_consen 78 ESRFPALDLLRLAALHP-PASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSIL 156 (268)
T ss_dssp CC-HHHHHHHHHHCCCH-CHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHH
T ss_pred ccchhHHhHHHHHHhCc-cHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHH
Confidence 33444555555444432 3333333322 2455555554443 3357888999999998887 55555555411 122
Q ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHhc--CChhh-HH-HHHHHHHHHHH-hccCCCCHhHHHHHHHHHHHhhcCCcch
Q 047123 418 IQLGEFIKRG---NVLLQQVSSSLLGNLS--ISDGN-KR-AVASCMGSLIK-LMECPKPVGLQEAATDAVLSLLTVRSNR 489 (579)
Q Consensus 418 ~~L~~lL~~~---~~~v~~~A~~aL~~L~--~~~~~-~~-~i~~~v~~Lv~-lL~~~~~~~v~~~a~~aL~~L~~~~~~~ 489 (579)
..+..+..+. +..+|..++.++.|++ ..... -. .-.+.+..+++ +.....+.+....++-||++|...+...
T Consensus 157 ~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~ 236 (268)
T PF08324_consen 157 ELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSA 236 (268)
T ss_dssp HHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhH
Confidence 2333322332 6789999999999998 11111 11 11111455555 4434468999999999999999766655
Q ss_pred hHHHh
Q 047123 490 KELVR 494 (579)
Q Consensus 490 ~~~~~ 494 (579)
....+
T Consensus 237 ~~~~~ 241 (268)
T PF08324_consen 237 KQLAK 241 (268)
T ss_dssp HHHCC
T ss_pred HHHHH
Confidence 55553
No 232
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=82.54 E-value=26 Score=39.69 Aligned_cols=194 Identities=14% Similarity=0.124 Sum_probs=117.4
Q ss_pred HHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHH--HHHHHHccCCH-
Q 047123 185 SLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLG--PLLRILETGSM- 261 (579)
Q Consensus 185 ~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~--~Lv~lL~~~~~- 261 (579)
.|.....+++++.+.+.+.|++..+...++.-...+.+..++..+.+++. ..+.+.......-+. .+-..+...+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~-~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAE-VLELRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHH-HhhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 77788899999999999999999999999833568889999999999998 655544433222222 34444444444
Q ss_pred HHHHHHHHHHHHhcCCCcc-HHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHH-HHHHh-
Q 047123 262 PLKEKAAIGVEAITTDPEN-AWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPV-LVQSL- 338 (579)
Q Consensus 262 ~v~~~aa~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~-Lv~lL- 338 (579)
+.-..++.+|..+..+.+. .......-+-..+.+.... .+.....+.-...+.+ +.+++
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~------------------~~~~~~~~~~~~~f~~~~~~il~ 634 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISR------------------WLTSEIRVINDRSFFPRILRILR 634 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhc------------------cCccceeehhhhhcchhHHHHhc
Confidence 7777888888887754332 0000001111222222111 1111111111112222 33444
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123 339 TSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAIS 398 (579)
Q Consensus 339 ~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~ 398 (579)
.+..+..+-.|++++.++...++.++..+.+.|+++.+...-.... -..+++.+...+-
T Consensus 635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSE-VVDVKEEAVLVIE 693 (699)
T ss_pred ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHH-HHHHHHHHHHHhh
Confidence 3456678899999999999888888888888888887766533322 1345555544443
No 233
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=82.54 E-value=85 Score=34.78 Aligned_cols=159 Identities=11% Similarity=0.027 Sum_probs=87.1
Q ss_pred cHHHHHHHhcCC----CHHHHHHHHHHHHHhhc----ChhhHHHHHHcCCHHHHHHHhc----CCCHHHHHHHHHHHHHH
Q 047123 289 GVSVLIEAFRSG----TALTQSHAVGAIRNIAA----VEDIKAALAEEGAVPVLVQSLT----SSSNLAQENAADCIATL 356 (579)
Q Consensus 289 ~i~~Lv~ll~~~----~~~~~~~a~~aL~nLs~----~~~~~~~l~~~g~v~~Lv~lL~----~~~~~v~~~a~~~L~~L 356 (579)
.+..+..++.++ .+.++..+..++.++.. +.+.....+....++.+...+. .++..-+...+.+|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 457788888753 44566677766666542 2221111111234555555442 34455566677777776
Q ss_pred hcCChhhHHHHHhcCcHHHHHHhhc-cCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhc--CCHHHH
Q 047123 357 AASGEYFRLLIIQERGLQRLMHLIQ-DSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKR--GNVLLQ 432 (579)
Q Consensus 357 a~~~~~~r~~l~~~g~i~~Lv~ll~-~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~--~~~~v~ 432 (579)
... ..+..+..++. ....+..++..|+.+|+.++.. +. .+-+.|+.++.+ .++++|
T Consensus 474 g~~-----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~---------~v~~~l~~i~~n~~e~~EvR 533 (574)
T smart00638 474 GHP-----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR---------KVQEVLLPIYLNRAEPPEVR 533 (574)
T ss_pred CCh-----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch---------HHHHHHHHHHcCCCCChHHH
Confidence 542 23455555555 3333457899999999987643 11 233445555543 467888
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHH
Q 047123 433 QVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEA 474 (579)
Q Consensus 433 ~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~ 474 (579)
..|..+|...--+... +..+...+...++..|.-.
T Consensus 534 iaA~~~lm~t~P~~~~-------l~~ia~~l~~E~~~QV~sf 568 (574)
T smart00638 534 MAAVLVLMETKPSVAL-------LQRIAELLNKEPNLQVASF 568 (574)
T ss_pred HHHHHHHHhcCCCHHH-------HHHHHHHHhhcCcHHHHHH
Confidence 8888777665322111 4455555534444555443
No 234
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.45 E-value=72 Score=33.91 Aligned_cols=140 Identities=14% Similarity=0.048 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHH-HHhcCcHHHH
Q 047123 216 HHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILET-GSMPLKEKAAIGVEAITTDPENAWA-ISAYGGVSVL 293 (579)
Q Consensus 216 ~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~aa~~L~~Ls~~~~~~~~-i~~~g~i~~L 293 (579)
+++..++..|++.|++.+...|+-+..... -.+..++.-|.+ .+.+|+..+..+|..+.....+... ..-.++.-.+
T Consensus 269 dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrl 347 (533)
T KOG2032|consen 269 DPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRL 347 (533)
T ss_pred CchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHH
Confidence 566789999999999999843443333322 235555555554 4788888888888877743222211 1112344566
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhcC--hhhHHHHHH---cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123 294 IEAFRSGTALTQSHAVGAIRNIAAV--EDIKAALAE---EGAVPVLVQSLTSSSNLAQENAADCIATLAA 358 (579)
Q Consensus 294 v~ll~~~~~~~~~~a~~aL~nLs~~--~~~~~~l~~---~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~ 358 (579)
..+..+.+++++.++......|+.. ...++.+.+ .+..| ++-.+.+.++.+ ..|++.....|.
T Consensus 348 R~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~-lllhl~d~~p~v-a~ACr~~~~~c~ 415 (533)
T KOG2032|consen 348 RTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAP-LLLHLQDPNPYV-ARACRSELRTCY 415 (533)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcccc-ceeeeCCCChHH-HHHHHHHHHhcC
Confidence 6777888999999999888888763 333444443 22222 222345555544 345555555544
No 235
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=81.86 E-value=11 Score=32.71 Aligned_cols=72 Identities=21% Similarity=0.168 Sum_probs=60.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhccChh-hHHHHHhhCcHHHHHHhhccC---CCHHHHHHHHHHHHHhhc
Q 047123 162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDK-SAAVVAKEGNVGYLISLLDFH---HQSSIREQAVLALSIIVS 234 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~-~~~~i~~~g~v~~Lv~LL~~~---~~~~~~~~A~~aL~~La~ 234 (579)
..++.|-.+|+++++.++..|+..|-.+.+.... ....+....++..|++++. . .++.++..++..+...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~-~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAK-NSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999988876554 6667777788999999997 4 468999999999988776
No 236
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=81.82 E-value=19 Score=43.11 Aligned_cols=139 Identities=12% Similarity=0.175 Sum_probs=83.0
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHH
Q 047123 330 AVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAA 407 (579)
Q Consensus 330 ~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~ 407 (579)
.+..++..+......+|..|+.||.++...|+.. +.....-..+.+-+.+.+ ..+|+.|+..++..... +...
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dss--asVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSS--ASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccch--hHHHHHHHHHHhhhhhccHHHHH
Confidence 4566777778778899999999999999877652 112222223333233333 37999999998865544 2222
Q ss_pred HHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHh
Q 047123 408 RILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSL 482 (579)
Q Consensus 408 ~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L 482 (579)
. +-.++.+-+.+....||..+.++++.++ ..|+.-.. .+....+++-. +++...++..+.+.+.++
T Consensus 892 q-------yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i-~~~cakmlrRv-~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 892 Q-------YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKI-VDMCAKMLRRV-NDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred H-------HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH-HHHHHHHHHHh-ccchhHHHHHHHHHHHHH
Confidence 2 2333444455667788899999999998 55543322 22211222222 222334677777777776
No 237
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=81.78 E-value=11 Score=33.08 Aligned_cols=73 Identities=18% Similarity=0.139 Sum_probs=60.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhhCcHHHHHHhhcc-----CCCHHHHHHHHHHHHHhhc
Q 047123 162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKD-DDKSAAVVAKEGNVGYLISLLDF-----HHQSSIREQAVLALSIIVS 234 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~LL~~-----~~~~~~~~~A~~aL~~La~ 234 (579)
..++.+..+|+++++.++..|+..|-.+.+. .+.....|...+++..|++++.. ..++.++...+..+..-+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3688899999999999999999988888763 45567788899999999999961 2468999999988887765
No 238
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=81.75 E-value=10 Score=33.01 Aligned_cols=73 Identities=16% Similarity=0.094 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhhCcHHHHHHhhccCCC--HHHHHHHHHHHHHhhc
Q 047123 161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKD-DDKSAAVVAKEGNVGYLISLLDFHHQ--SSIREQAVLALSIIVS 234 (579)
Q Consensus 161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~LL~~~~~--~~~~~~A~~aL~~La~ 234 (579)
...++.+-.+|+++++.++..|+..|-.+.+. .+.....+...+++..|++++. ... +.+++.++..+..-+.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~-~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIK-PKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999888876 4566777889999999999998 543 3489999888887765
No 239
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=81.59 E-value=16 Score=34.58 Aligned_cols=108 Identities=12% Similarity=0.058 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhc---cCCCChHHHHHHHHHHHHcccc---hhHHHHHhhcCcHHH
Q 047123 345 AQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQ---DSTSSIVTVENALLAISSLSLS---DSAARILSSTTSFII 418 (579)
Q Consensus 345 v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~---~~~~~~~~~~~A~~aL~~L~~~---~~~~~l~~~~~g~i~ 418 (579)
-...++..|..+++.+ ..|..+.+....-.+..++. +.+.-+.++..+.+++..|..+ .....+... .+++
T Consensus 116 RvcnaL~lLQclaShP-etk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltT--eivP 192 (315)
T COG5209 116 RVCNALNLLQCLASHP-ETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTT--EIVP 192 (315)
T ss_pred HHHHHHHHHHHHhcCc-chheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhh--hHHH
Confidence 4455666677777754 55777777665434444443 3333357888999999999987 445566666 8999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH
Q 047123 419 QLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASC 455 (579)
Q Consensus 419 ~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~ 455 (579)
.++.+++.++.--+.-|+.++..+-.++..-+++.+.
T Consensus 193 LcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT 229 (315)
T COG5209 193 LCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQT 229 (315)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 9999999999999999999999998888777777776
No 240
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=81.36 E-value=26 Score=38.70 Aligned_cols=234 Identities=14% Similarity=0.106 Sum_probs=140.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHh
Q 047123 259 GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSL 338 (579)
Q Consensus 259 ~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL 338 (579)
.+.+-+..--.-|.+ ..+...+.++....++.|+..+..++. -...+..+..+...-+... ++.+.+|.+++++
T Consensus 266 ks~~eK~~Ff~~L~~--~l~~~pe~i~~~kvlp~Ll~~~~~g~a--~~~~ltpl~k~~k~ld~~e--yq~~i~p~l~kLF 339 (690)
T KOG1243|consen 266 KSVEEKQKFFSGLID--RLDNFPEEIIASKVLPILLAALEFGDA--ASDFLTPLFKLGKDLDEEE--YQVRIIPVLLKLF 339 (690)
T ss_pred CcHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHhhcccc--chhhhhHHHHhhhhccccc--cccchhhhHHHHh
Confidence 344444444433333 123345567777778888888777761 1222222222222111111 6778999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHH
Q 047123 339 TSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFII 418 (579)
Q Consensus 339 ~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~ 418 (579)
...+..+|..-+.-+-+... .....+++..+.+.+..-+.+.+. .+++.++..+..|+..-+.+ .+.. ..+.
T Consensus 340 ~~~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DTn~--~Lre~Tlksm~~La~kL~~~-~Ln~--Ellr 411 (690)
T KOG1243|consen 340 KSPDRQIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDTNA--TLREQTLKSMAVLAPKLSKR-NLNG--ELLR 411 (690)
T ss_pred cCcchHHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccCCH--HHHHHHHHHHHHHHhhhchh-hhcH--HHHH
Confidence 99998888776665555443 345567788889998888877776 89999999999888762222 2222 3556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhc
Q 047123 419 QLGEFIKRGNVLLQQVSSSLLGNLSI--SDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDE 496 (579)
Q Consensus 419 ~L~~lL~~~~~~v~~~A~~aL~~L~~--~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~ 496 (579)
.|..+-.+.+..++.+..-++..++. .+..|+.+. +-.+.+-+ .+....-|.++..+++......+..... .
T Consensus 412 ~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL--~~aftral-kdpf~paR~a~v~~l~at~~~~~~~~va---~ 485 (690)
T KOG1243|consen 412 YLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVL--ASAFTRAL-KDPFVPARKAGVLALAATQEYFDQSEVA---N 485 (690)
T ss_pred HHHhhCccccCcccccceeeecccccccchhhhcccc--chhhhhhh-cCCCCCchhhhhHHHhhcccccchhhhh---h
Confidence 66666566677888888888888872 333333222 33444445 3444556777777777766544332211 3
Q ss_pred ccHHHHHhhcCCCchh
Q 047123 497 KSVMRLMQMLDPKNEA 512 (579)
Q Consensus 497 ~~i~~Lv~lL~~~~~~ 512 (579)
..++.++-+.-+.+..
T Consensus 486 kIlp~l~pl~vd~e~~ 501 (690)
T KOG1243|consen 486 KILPSLVPLTVDPEKT 501 (690)
T ss_pred hccccccccccCcccc
Confidence 4455566655555544
No 241
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=81.07 E-value=8.5 Score=31.14 Aligned_cols=71 Identities=14% Similarity=0.203 Sum_probs=56.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccCh
Q 047123 164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAND 237 (579)
Q Consensus 164 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~ 237 (579)
....+..|++..+.+|..++..|+.+..... ...+...+.+..+...|+ ++++-+=.+|+.+|..|+..++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~-d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLK-DEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcC-CCCchHHHHHHHHHHHHHHHCh
Confidence 4566777888889999999999999987665 222234667788888999 9999999999999999998443
No 242
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.41 E-value=53 Score=36.49 Aligned_cols=106 Identities=12% Similarity=0.014 Sum_probs=73.0
Q ss_pred HHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcC---Chhh
Q 047123 373 LQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI---SDGN 448 (579)
Q Consensus 373 i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~---~~~~ 448 (579)
+..+++..++.+. .++...+..|.-+... ..+..-+-. +....+..-+.+..+.|+.+|..+|..+-. ++++
T Consensus 87 f~hlLRg~Eskdk--~VRfrvlqila~l~d~~~eidd~vfn--~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~ 162 (892)
T KOG2025|consen 87 FYHLLRGTESKDK--KVRFRVLQILALLSDENAEIDDDVFN--KLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC 162 (892)
T ss_pred HHHHHhcccCcch--hHHHHHHHHHHHHhccccccCHHHHH--HHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc
Confidence 3334444444444 7899999999988875 344444444 677777777888999999999999999972 2221
Q ss_pred HHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchh
Q 047123 449 KRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRK 490 (579)
Q Consensus 449 ~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~ 490 (579)
. .+..+..+++++.+++||.. +|.|++-+...+.
T Consensus 163 ~-----v~n~l~~liqnDpS~EVRRa---aLsnI~vdnsTlp 196 (892)
T KOG2025|consen 163 P-----VVNLLKDLIQNDPSDEVRRA---ALSNISVDNSTLP 196 (892)
T ss_pred c-----HHHHHHHHHhcCCcHHHHHH---HHHhhccCcccch
Confidence 1 16677788888899999985 5666665544433
No 243
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=80.18 E-value=25 Score=34.60 Aligned_cols=148 Identities=13% Similarity=0.061 Sum_probs=89.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhH-HHHHhh
Q 047123 334 LVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSA-ARILSS 412 (579)
Q Consensus 334 Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~-~~l~~~ 412 (579)
|=..|.++++.+|.+++.+|..+...-+. ...+..-+..|+.++.+.-.+......++.++..|...... .....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~---~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~- 79 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPP---DFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAV- 79 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCH---hhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHH-
Confidence 44567888999999999999987653322 12333346667666544332234555557777666643111 11111
Q ss_pred cCcHHHHHHHHH--hcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCc
Q 047123 413 TTSFIIQLGEFI--KRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVRS 487 (579)
Q Consensus 413 ~~g~i~~L~~lL--~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~ 487 (579)
..+..+.+-. ++.....|...-.++..+. ...+.-+.+... +..+++.++..+++.....+...+..+....+
T Consensus 80 --~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 80 --KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred --HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 1233333221 2334466777777777777 333333445555 89999999777889888888888888876654
No 244
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=79.74 E-value=93 Score=34.35 Aligned_cols=166 Identities=19% Similarity=0.190 Sum_probs=101.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHH---hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHH
Q 047123 167 IFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVA---KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIV 243 (579)
Q Consensus 167 Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~---~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i 243 (579)
.+..+..-.++++.-|+..|+-+......+-..+- ...++..++..+. .++..+..++++|.|+.. ++..++.+
T Consensus 549 ~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~--~~~an~ll~vR~L~N~f~-~~~g~~~~ 625 (745)
T KOG0301|consen 549 ALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN--ADPANQLLVVRCLANLFS-NPAGRELF 625 (745)
T ss_pred HHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc--cchhHHHHHHHHHHHhcc-CHHHHHHH
Confidence 44555556788899999999988775554433333 2234555555543 557888999999999999 88888877
Q ss_pred Hhc--CCHHHHHHHHccCCHHHHHHHHHHHHHhcC--CCccHHHHHhcCcHHHHHHHhcCC-----CHHHHHHHHHHHHH
Q 047123 244 FEE--GGLGPLLRILETGSMPLKEKAAIGVEAITT--DPENAWAISAYGGVSVLIEAFRSG-----TALTQSHAVGAIRN 314 (579)
Q Consensus 244 ~~~--g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~--~~~~~~~i~~~g~i~~Lv~ll~~~-----~~~~~~~a~~aL~n 314 (579)
... ..+.++.+.=...+..++...+....|++. ..++- +.++.+.|...+... +-+.......+|.+
T Consensus 626 ~s~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~Algt 701 (745)
T KOG0301|consen 626 MSRLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGT 701 (745)
T ss_pred HHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHh
Confidence 654 223333333223356777766666666551 11111 145555555554431 22334455667788
Q ss_pred hhcChhhHHHHHHcCCHHHHHHHhc
Q 047123 315 IAAVEDIKAALAEEGAVPVLVQSLT 339 (579)
Q Consensus 315 Ls~~~~~~~~l~~~g~v~~Lv~lL~ 339 (579)
|+..+....++...-.|..++.-++
T Consensus 702 L~t~~~~~~~~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 702 LMTVDASVIQLAKNRSVDSIAKKLK 726 (745)
T ss_pred hccccHHHHHHHHhcCHHHHHHHHH
Confidence 8888877777777666777666664
No 245
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=78.59 E-value=82 Score=32.15 Aligned_cols=154 Identities=16% Similarity=0.170 Sum_probs=110.8
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHhhc-cChhhHHHHHhc-C-CHHHHHHHHccC-----C--------HHHHHHHHH
Q 047123 206 VGYLISLLDFHHQSSIREQAVLALSIIVS-ANDESRKIVFEE-G-GLGPLLRILETG-----S--------MPLKEKAAI 269 (579)
Q Consensus 206 v~~Lv~LL~~~~~~~~~~~A~~aL~~La~-~~~~~~~~i~~~-g-~l~~Lv~lL~~~-----~--------~~v~~~aa~ 269 (579)
+..+-+-|. +....+...+++.|..+.. +.......+... . -.+.|-+++... . +.+|.....
T Consensus 58 ~k~lyr~L~-~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLS-SSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 777888888 7788888899999998887 444555555543 2 345666666321 1 278888887
Q ss_pred HHHHhcC--CCccHHHHHh-cCcHHHHHHHhcCCCHHHHHHHHHHHHH-hhcCh----hhHHHHHHcCCHHHHHHHhcCC
Q 047123 270 GVEAITT--DPENAWAISA-YGGVSVLIEAFRSGTALTQSHAVGAIRN-IAAVE----DIKAALAEEGAVPVLVQSLTSS 341 (579)
Q Consensus 270 ~L~~Ls~--~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~a~~aL~n-Ls~~~----~~~~~l~~~g~v~~Lv~lL~~~ 341 (579)
.+..+.. ++..+..+.+ .+.+..+++.+..+++++....+.+|.. +..++ ..|..+..+..+..|..+....
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~ 216 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRD 216 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhccc
Confidence 7666553 4455655554 6678889999988888898898888874 44433 3466667778889999988766
Q ss_pred CH----HHHHHHHHHHHHHhcCC
Q 047123 342 SN----LAQENAADCIATLAASG 360 (579)
Q Consensus 342 ~~----~v~~~a~~~L~~La~~~ 360 (579)
++ .+.+.+-..|..+|.+.
T Consensus 217 ~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 217 GEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred CCcccchHHHHHHHHHHHHhcCC
Confidence 66 88999999999998754
No 246
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=76.72 E-value=80 Score=31.05 Aligned_cols=216 Identities=18% Similarity=0.127 Sum_probs=129.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhcc----ChhhHHHHH------hh-CcHHHHHHhhccCC--CHHHHHHHHHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKD----DDKSAAVVA------KE-GNVGYLISLLDFHH--QSSIREQAVLAL 229 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~----~~~~~~~i~------~~-g~v~~Lv~LL~~~~--~~~~~~~A~~aL 229 (579)
..|.-++.|++.++..-..|+..|..+... ++..+..+. .+ |..+-+..++- .| +....+.+...|
T Consensus 8 lFW~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~-KGL~Ss~t~e~tl~lL 86 (262)
T PF14225_consen 8 LFWTAVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLL-KGLRSSSTYELTLRLL 86 (262)
T ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHh-CccCCCCcHHHHHHHH
Confidence 467888899998888888888888877542 334444333 12 44555555443 22 355677788888
Q ss_pred HHhhccChh--------hHHHHHhcCCHHHHHHHHccCC----HHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHh
Q 047123 230 SIIVSANDE--------SRKIVFEEGGLGPLLRILETGS----MPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAF 297 (579)
Q Consensus 230 ~~La~~~~~--------~~~~i~~~g~l~~Lv~lL~~~~----~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll 297 (579)
..+.. .+. .|-.+.--+.+|.++..+++++ ......+|..|..++.... .+.+..++...
T Consensus 87 ~~L~~-~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-------~~~La~il~~y 158 (262)
T PF14225_consen 87 SRLTP-LPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-------LPNLARILSSY 158 (262)
T ss_pred HHHhc-CCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-------CccHHHHHHHH
Confidence 88775 222 2333333456888888888877 2445567778888884321 22334444333
Q ss_pred cCC----CHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcH
Q 047123 298 RSG----TALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGL 373 (579)
Q Consensus 298 ~~~----~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i 373 (579)
..+ ..+....++..|+.-.. ++. +...+-.++.++.++.+.++..++.+|..+-..-+-.+. .....+
T Consensus 159 a~~~fr~~~dfl~~v~~~l~~~f~-P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dli 230 (262)
T PF14225_consen 159 AKGRFRDKDDFLSQVVSYLREAFF-PDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLI 230 (262)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhC-chh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHH
Confidence 322 22444555555544221 111 122456688889899999999999999998754332222 445578
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHHc
Q 047123 374 QRLMHLIQDSTSSIVTVENALLAISSL 400 (579)
Q Consensus 374 ~~Lv~ll~~~~~~~~~~~~A~~aL~~L 400 (579)
.++++++++.. -..|..+|.+.
T Consensus 231 spllrlL~t~~-----~~eAL~VLd~~ 252 (262)
T PF14225_consen 231 SPLLRLLQTDL-----WMEALEVLDEI 252 (262)
T ss_pred HHHHHHhCCcc-----HHHHHHHHHHH
Confidence 99999998754 34455555443
No 247
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=76.48 E-value=43 Score=37.15 Aligned_cols=132 Identities=11% Similarity=0.034 Sum_probs=82.7
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHH
Q 047123 415 SFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELV 493 (579)
Q Consensus 415 g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~ 493 (579)
.+++.|..-+++.+..+|..++..+-..+..-+ -..+.+. +|.+-++.-+..+..++.+++-++..++.. ....
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD-~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~----lD~~ 463 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESID-VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR----LDKA 463 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc-HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH----HHHH
Confidence 478888888889999999999999988883323 3344444 555555443666789999999999998821 1111
Q ss_pred hhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhccCC
Q 047123 494 RDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEV 554 (579)
Q Consensus 494 ~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~ 554 (579)
.--.-+.++.+....+++. ....-+.+..++..... .++..+.+.+++.+.-|...+.
T Consensus 464 ~v~d~~lpi~~~~~~~dp~-iv~~~~~i~~~l~~~~~--~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 464 AVLDELLPILKCIKTRDPA-IVMGFLRIYEALALIIY--SGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HhHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHhhcc--cceeeehhhhhhhhhhhhhccc
Confidence 1123345666667777766 44444444555544443 2234445667777776665543
No 248
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=75.28 E-value=29 Score=37.32 Aligned_cols=99 Identities=16% Similarity=0.222 Sum_probs=63.4
Q ss_pred hCcHHHHHHh-hccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCcc
Q 047123 203 EGNVGYLISL-LDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILET-GSMPLKEKAAIGVEAITTDPEN 280 (579)
Q Consensus 203 ~g~v~~Lv~L-L~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~aa~~L~~Ls~~~~~ 280 (579)
.|.|..|+.. .. +++.++|..|+-+|+.+|.+++ ..++..+++|.. .+..+|...+.+|.--+.....
T Consensus 550 ~~vv~~lLh~avs-D~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~ 619 (926)
T COG5116 550 LGVVSTLLHYAVS-DGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD 619 (926)
T ss_pred chhHhhhheeecc-cCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc
Confidence 3456666665 45 6778888888888888877332 345566666654 5788888888888766654332
Q ss_pred HHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 047123 281 AWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA 317 (579)
Q Consensus 281 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~ 317 (579)
+.+ +..|-.+..+.+.-++..|+-++..+..
T Consensus 620 ~~a------~diL~~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 620 KVA------TDILEALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred HHH------HHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 222 2444455556666777777777765543
No 249
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=75.21 E-value=11 Score=30.49 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=58.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 047123 291 SVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQE 370 (579)
Q Consensus 291 ~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~ 370 (579)
...+..+.++.+.+|.+++..|+++..... ....-..+++..+...++++++-+--+|+.+|..|+...+.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-------- 76 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-------- 76 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH--------
Confidence 445566777888899999999999977544 11122345667777888899999999999999999976543
Q ss_pred CcHHHHHHhh
Q 047123 371 RGLQRLMHLI 380 (579)
Q Consensus 371 g~i~~Lv~ll 380 (579)
.+++.|++..
T Consensus 77 ~vl~~L~~~y 86 (92)
T PF10363_consen 77 EVLPILLDEY 86 (92)
T ss_pred HHHHHHHHHH
Confidence 2455555543
No 250
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=75.20 E-value=31 Score=28.23 Aligned_cols=94 Identities=15% Similarity=0.145 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHH-hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHH
Q 047123 177 EFKKKALESLLQLLKDDDKSAAVVA-KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRI 255 (579)
Q Consensus 177 ~~~~~Al~~L~~l~~~~~~~~~~i~-~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~l 255 (579)
|.|..|+..|..=...+--....+. ..+.+..|++-.+ .+.+...+.++..|..+.. ++.....+.+-|++.-|-++
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFn-f~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~kl 79 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFN-FPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKL 79 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhC-CCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHH
Confidence 4566666666443222222222222 3445555555555 5666688899999999999 99999999999988887776
Q ss_pred HccCCHHHHHHHHHHHH
Q 047123 256 LETGSMPLKEKAAIGVE 272 (579)
Q Consensus 256 L~~~~~~v~~~aa~~L~ 272 (579)
-+.-++..+...-.++.
T Consensus 80 r~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 80 RPNVEPNLQAEIDEILD 96 (98)
T ss_pred HhcCCHHHHHHHHHHHh
Confidence 66566766665555443
No 251
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=75.16 E-value=1e+02 Score=31.47 Aligned_cols=156 Identities=15% Similarity=0.120 Sum_probs=106.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhc-CChhhHHHHHh--cCcHHHHHHhhccCC---CC--------hHHHHHHHHH
Q 047123 331 VPVLVQSLTSSSNLAQENAADCIATLAA-SGEYFRLLIIQ--ERGLQRLMHLIQDST---SS--------IVTVENALLA 396 (579)
Q Consensus 331 v~~Lv~lL~~~~~~v~~~a~~~L~~La~-~~~~~r~~l~~--~g~i~~Lv~ll~~~~---~~--------~~~~~~A~~a 396 (579)
++.+.+.|.+....+...++..|..++. .+......+.+ +-..+.+.+++.... .+ +.+|...++.
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7778888888888888899999999998 54444444444 223455555553322 11 1678888887
Q ss_pred HHHcccc---hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhh----HHHHH-HH-HHHHHHhccCC
Q 047123 397 ISSLSLS---DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGN----KRAVA-SC-MGSLIKLMECP 466 (579)
Q Consensus 397 L~~L~~~---~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~----~~~i~-~~-v~~Lv~lL~~~ 466 (579)
+..+... .....+++. .+.+..+.+-|..+++++.......+..=. .++.. +..+. +. +..|..+. ..
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~-~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly-~~ 215 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQ-KKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLY-SR 215 (330)
T ss_pred HHHHHccCCHHHHHHHHHc-CchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHh-cc
Confidence 7777765 344555554 256888888898899999999988888543 44433 33332 33 88999987 44
Q ss_pred CCH----hHHHHHHHHHHHhhcCCcc
Q 047123 467 KPV----GLQEAATDAVLSLLTVRSN 488 (579)
Q Consensus 467 ~~~----~v~~~a~~aL~~L~~~~~~ 488 (579)
.+. .+.+.+-+.|..+++++.+
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhcCCCc
Confidence 445 8899999999999876543
No 252
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=74.78 E-value=28 Score=30.25 Aligned_cols=74 Identities=20% Similarity=0.140 Sum_probs=58.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccC--CCCHhHHHHHHHHHHHhhcCCcc
Q 047123 415 SFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMEC--PKPVGLQEAATDAVLSLLTVRSN 488 (579)
Q Consensus 415 g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~--~~~~~v~~~a~~aL~~L~~~~~~ 488 (579)
.++..|.+-|.++++.++..|+.+|-.+. ..+.....+... +..|++++.. ..+..|+..+.+.+.+......+
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45667777888999999999999999998 445577777774 7779998844 35789999999999998865443
No 253
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=74.30 E-value=1e+02 Score=30.98 Aligned_cols=218 Identities=9% Similarity=0.036 Sum_probs=141.6
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-----ccHHHH-HhcCcHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 047123 242 IVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDP-----ENAWAI-SAYGGVSVLIEAFRSG-TALTQSHAVGAIRN 314 (579)
Q Consensus 242 ~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~-----~~~~~i-~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~n 314 (579)
.+..+|.+..+++.+....-+.+..+..+..++-..+ ....-+ .....+..|+.- .. .+++--++-..++.
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLRE 151 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHHH
Confidence 4456899999999999998888888888888876211 112222 223455555544 22 35555555555666
Q ss_pred hhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC---c-HHHHHHhhccCCCChHHH
Q 047123 315 IAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQER---G-LQRLMHLIQDSTSSIVTV 390 (579)
Q Consensus 315 Ls~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g---~-i~~Lv~ll~~~~~~~~~~ 390 (579)
...++...+.+.+.........++..++=++...|..+...+..........+.... . .+.--.++.+++. -.+
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Ny--vtk 229 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENY--VTK 229 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccce--ehH
Confidence 666777777777777888888888777778888888888877654333333333222 2 2334456777776 788
Q ss_pred HHHHHHHHHcccc-hhHHHHHhh--cCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCh----hhHHHHHHHHHHHHHhc
Q 047123 391 ENALLAISSLSLS-DSAARILSS--TTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISD----GNKRAVASCMGSLIKLM 463 (579)
Q Consensus 391 ~~A~~aL~~L~~~-~~~~~l~~~--~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~----~~~~~i~~~v~~Lv~lL 463 (579)
..+..++..+-.. .+...+... ++..+..+..+|+..+..+|.+|-...+-...++ ..+..+...-+.|++++
T Consensus 230 rqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KLl~~l 309 (342)
T KOG1566|consen 230 RQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKLLELL 309 (342)
T ss_pred HHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHHHHHH
Confidence 8888888887765 333332222 2356788899999999999999999988887444 34444444444444443
No 254
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=73.70 E-value=1e+02 Score=30.88 Aligned_cols=200 Identities=13% Similarity=0.036 Sum_probs=133.1
Q ss_pred HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-----cCcHHHHHHhhccCCCChHHHHHHHHHH
Q 047123 323 AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQ-----ERGLQRLMHLIQDSTSSIVTVENALLAI 397 (579)
Q Consensus 323 ~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~-----~g~i~~Lv~ll~~~~~~~~~~~~A~~aL 397 (579)
..+.+.|....++..+...+-..+..+..+..++-..+-..|...++ ...+..|+.- .....++--++-..+
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~~~~~~iaL~cg~ml 149 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---YENTPEIALTCGNML 149 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---hccchHHHHHHHHHH
Confidence 35678899999999998877777777777777775433222221111 2233333333 211124555555666
Q ss_pred HHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH-----HHH-HHHhccCCCCH
Q 047123 398 SSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC-----MGS-LIKLMECPKPV 469 (579)
Q Consensus 398 ~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-----v~~-Lv~lL~~~~~~ 469 (579)
..+..+ ...+.++.+ .-...+..+.+.+.-++..-|......+- .+.-....+... .+. --+++ .+.+.
T Consensus 150 rEcirhe~LakiiL~s--~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll-~s~Ny 226 (342)
T KOG1566|consen 150 RECIRHEFLAKIILES--TNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLL-RSENY 226 (342)
T ss_pred HHHHhhHHHHHHHHcc--hhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHh-cccce
Confidence 666666 445556666 67778888888888888888888888887 444444444443 244 44466 77888
Q ss_pred hHHHHHHHHHHHhhcCCcchhH---HHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCC
Q 047123 470 GLQEAATDAVLSLLTVRSNRKE---LVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGG 529 (579)
Q Consensus 470 ~v~~~a~~aL~~L~~~~~~~~~---~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~ 529 (579)
-.+..+..+|+.+..+.+|... .+.+-..+..++.+|++++.+ .+-.|.-+...+..++
T Consensus 227 vtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskn-iQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 227 VTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKN-IQLEAFHVFKVFVANP 288 (342)
T ss_pred ehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCcccc-chHHHHHHHHHHhcCC
Confidence 8899999999999988888654 444445677889999988877 7777777776666655
No 255
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=73.51 E-value=43 Score=37.03 Aligned_cols=174 Identities=11% Similarity=0.068 Sum_probs=109.5
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHH
Q 047123 341 SSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFII 418 (579)
Q Consensus 341 ~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~ 418 (579)
.++.++..|.-+|..+..-.-.++ ..-+|.++..+..++. +.++.+|+-.+..+..+ ...+.. -.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~-P~IR~NaVvglgD~~vcfN~~~de~-------t~ 974 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPI-PRIRANAVVGLGDFLVCFNTTADEH-------TH 974 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCC-cceeccceeeccccceehhhhhHHH-------HH
Confidence 467888888888887643222222 2347888888875543 48999999888877655 222222 23
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhc-CC-hhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhc
Q 047123 419 QLGEFIKRGNVLLQQVSSSLLGNLS-IS-DGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDE 496 (579)
Q Consensus 419 ~L~~lL~~~~~~v~~~A~~aL~~L~-~~-~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~ 496 (579)
.|..-|.+.+..||..+.+.+..|- .+ -..+- ..+.+...| +.++.++.+.|--.+..++..+.. + -
T Consensus 975 yLyrrL~De~~~V~rtclmti~fLilagq~KVKG----qlg~ma~~L-~deda~Isdmar~fft~~a~KdNt----~--y 1043 (1128)
T COG5098 975 YLYRRLGDEDADVRRTCLMTIHFLILAGQLKVKG----QLGKMALLL-TDEDAEISDMARHFFTQIAKKDNT----M--Y 1043 (1128)
T ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHccceeecc----chhhhHhhc-cCCcchHHHHHHHHHHHHHhcccc----h--h
Confidence 3566677888999999999999886 21 11111 177888889 778899999998888888764321 1 0
Q ss_pred ccHHHHHhhcCCCc--hhhhhHHHHHHHHHHhCCCChhHHHHHHHc
Q 047123 497 KSVMRLMQMLDPKN--EALNKKFPVMVTAAVLGGGSNGCRKRLVAA 540 (579)
Q Consensus 497 ~~i~~Lv~lL~~~~--~~~~k~~av~~L~~L~~~~~~~~r~~i~~~ 540 (579)
+|.--+..-|.++. ....-+..+..|..+...+. |.|++.+.
T Consensus 1044 n~fidifs~ls~~ae~g~e~fk~II~FLt~fI~ker--h~kql~E~ 1087 (1128)
T COG5098 1044 NGFIDIFSTLSSDAENGQEPFKLIIGFLTDFISKER--HQKQLKES 1087 (1128)
T ss_pred hhhHHHHHHcCchhhcCCCcHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 11112333333221 11134566777777777776 77777654
No 256
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=73.13 E-value=22 Score=31.16 Aligned_cols=74 Identities=20% Similarity=0.182 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhccC-hhhHHHHHhhCcHHHHHHhhccCCCHH---HHHHHHHHHHHhhc
Q 047123 161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKDD-DKSAAVVAKEGNVGYLISLLDFHHQSS---IREQAVLALSIIVS 234 (579)
Q Consensus 161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~LL~~~~~~~---~~~~A~~aL~~La~ 234 (579)
...++.+-.+|+++++.++..|+..|-.+.+.. +.....+....++..|.+++....... +++.++..|..-+.
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 346888999999999999999999998888765 566677778889999999887233333 89999988887765
No 257
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=72.42 E-value=53 Score=36.38 Aligned_cols=108 Identities=9% Similarity=0.083 Sum_probs=72.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhc----CChhhHHHHHHH----HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcc
Q 047123 417 IIQLGEFIKRGNVLLQQVSSSLLGNLS----ISDGNKRAVASC----MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSN 488 (579)
Q Consensus 417 i~~L~~lL~~~~~~v~~~A~~aL~~L~----~~~~~~~~i~~~----v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~ 488 (579)
...+..+|.+.+...+-.-..+..|+. ++++......+. ++.|..-+ .+.++.+|..|...+..+..-+..
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl-~D~~py~RtKalqv~~kifdl~sk 379 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERL-SDTYPYTRTKALQVLEKIFDLNSK 379 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHHhCccc
Confidence 456888899999999888888888887 455455555444 55555555 456889999999999888754321
Q ss_pred hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCC
Q 047123 489 RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGG 528 (579)
Q Consensus 489 ~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~ 528 (579)
.... ....+...++.|.+++.. +++.++..+..|--.
T Consensus 380 ~~~~--r~ev~~lv~r~lqDrss~-VRrnaikl~SkLL~~ 416 (1128)
T COG5098 380 TVGR--RHEVIRLVGRRLQDRSSV-VRRNAIKLCSKLLMR 416 (1128)
T ss_pred ccch--HHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHhc
Confidence 1100 012234555667777666 888999888777643
No 258
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=72.27 E-value=96 Score=29.88 Aligned_cols=170 Identities=13% Similarity=0.041 Sum_probs=97.4
Q ss_pred HHHHH-HhcCCCHHHHHHHHHHHHHhhcCh-hhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 047123 291 SVLIE-AFRSGTALTQSHAVGAIRNIAAVE-DIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLII 368 (579)
Q Consensus 291 ~~Lv~-ll~~~~~~~~~~a~~aL~nLs~~~-~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~ 368 (579)
+.|+. +-+..++..+...+.+|..++.+. .+... ++..+..+...+....+.-+.+.+..+-..++...
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence 34444 444568899999999999999876 43333 34556666667766666667777777765443211
Q ss_pred hcCcHHHHHHhh--c------cCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHH-hcCCHHHHHHHHHH
Q 047123 369 QERGLQRLMHLI--Q------DSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFI-KRGNVLLQQVSSSL 438 (579)
Q Consensus 369 ~~g~i~~Lv~ll--~------~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL-~~~~~~v~~~A~~a 438 (579)
+.++.++..+ + +++...+.....+..+..+|.. +. -.. ..+..+...| +..++.++..+..+
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~--~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGV--DLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHH--HHHHHHHHHHhccccHHHHHHHHHH
Confidence 3344443331 1 1111123333445567777766 33 122 5677888888 78888999999999
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHH
Q 047123 439 LGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAV 479 (579)
Q Consensus 439 L~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL 479 (579)
|..|+.++ --.+......+.+-++....+.+...-+..+
T Consensus 146 l~~Lc~~~--vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~ 184 (234)
T PF12530_consen 146 LAPLCEAE--VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLF 184 (234)
T ss_pred HHHHHHHh--hccHHHHHHHHHHhcCCccchHHHHHHHHHH
Confidence 99998211 1111122344444444445555554433333
No 259
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.33 E-value=80 Score=36.82 Aligned_cols=80 Identities=23% Similarity=0.248 Sum_probs=62.6
Q ss_pred HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcc---CCCChHHHHHHHHHHH
Q 047123 322 KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQD---STSSIVTVENALLAIS 398 (579)
Q Consensus 322 ~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~---~~~~~~~~~~A~~aL~ 398 (579)
++.+...|++..+++.+-...+.++..-+..|..++..++...+..-..|+++.|++++.. +++ ....++..++.
T Consensus 901 k~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgss--pfLshalkIve 978 (2799)
T KOG1788|consen 901 KQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSS--PFLSHALKIVE 978 (2799)
T ss_pred HhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCc--hHhhccHHHHH
Confidence 6677888999999988877788889999999999998888877888888999988886543 333 56667777777
Q ss_pred Hcccc
Q 047123 399 SLSLS 403 (579)
Q Consensus 399 ~L~~~ 403 (579)
.|+..
T Consensus 979 mLgay 983 (2799)
T KOG1788|consen 979 MLGAY 983 (2799)
T ss_pred HHhhc
Confidence 76665
No 260
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=70.17 E-value=1.9e+02 Score=32.36 Aligned_cols=172 Identities=15% Similarity=0.172 Sum_probs=97.0
Q ss_pred hCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHHHcc----CCHHHHHHHHHHHHHhc--
Q 047123 203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSAND-ESRKIVFEEGGLGPLLRILET----GSMPLKEKAAIGVEAIT-- 275 (579)
Q Consensus 203 ~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~-~~~~~i~~~g~l~~Lv~lL~~----~~~~v~~~aa~~L~~Ls-- 275 (579)
...+..+.+++. ...... ..|...|..+.. .. .--. ..+..+..+++. .++.++..|.-++..|.
T Consensus 394 ~~av~~i~~~I~-~~~~~~-~ea~~~l~~l~~-~~~~Pt~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~ 465 (618)
T PF01347_consen 394 NPAVKFIKDLIK-SKKLTD-DEAAQLLASLPF-HVRRPTE-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHK 465 (618)
T ss_dssp HHHHHHHHHHHH-TT-S-H-HHHHHHHHHHHH-T-----H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCCH-HHHHHHHHHHHh-hcCCCCH-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCc
Confidence 335777777777 544322 234555555554 22 1111 224445555554 35667777887777776
Q ss_pred --CCC------ccHHHHHhcCcHHHHHHHhc----CCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCC--
Q 047123 276 --TDP------ENAWAISAYGGVSVLIEAFR----SGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSS-- 341 (579)
Q Consensus 276 --~~~------~~~~~i~~~g~i~~Lv~ll~----~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~-- 341 (579)
... ..+........++.+...|. .++..-+..++.+|.|+... ..++.+..++...
T Consensus 466 ~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~ 535 (618)
T PF01347_consen 466 YCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEE 535 (618)
T ss_dssp HHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-
T ss_pred eeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccc
Confidence 221 11122222335566666555 45667788888999987532 3677777777555
Q ss_pred -CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHc
Q 047123 342 -SNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSL 400 (579)
Q Consensus 342 -~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L 400 (579)
+..+|..|+.+|..++...+. .+.+.++.++.+...+.++|..|..+|...
T Consensus 536 ~~~~~R~~Ai~Alr~~~~~~~~--------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 536 VPHFIRVAAIQALRRLAKHCPE--------KVREILLPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp S-HHHHHHHHHTTTTGGGT-HH--------HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHhhcCcH--------HHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence 568999999999988665432 235677777777666568888887777653
No 261
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=69.65 E-value=35 Score=30.13 Aligned_cols=73 Identities=15% Similarity=0.067 Sum_probs=59.3
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCc
Q 047123 415 SFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRS 487 (579)
Q Consensus 415 g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~ 487 (579)
.++..|..-+.+.++.++..|+.+|-.+. ........+... +..|++++....+..|+......+...+..+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 45666777788899999999999999998 566677777766 89999999444789999999999998876543
No 262
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=68.15 E-value=41 Score=27.52 Aligned_cols=67 Identities=19% Similarity=0.123 Sum_probs=53.3
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHH
Q 047123 245 EEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGA 311 (579)
Q Consensus 245 ~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~a 311 (579)
..+.+..|++.....+...++.+...|..|..++.....+...|+++.|-++-..-++..+...-..
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~i 94 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEI 94 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4467788888888887778999999999999999999999999999987777666666555544433
No 263
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=67.12 E-value=43 Score=29.54 Aligned_cols=72 Identities=17% Similarity=0.069 Sum_probs=58.3
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCC
Q 047123 415 SFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVR 486 (579)
Q Consensus 415 g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~ 486 (579)
.++..|.+-|.++++.++..|+.+|-.+. ........+... ++.|++++....+..|+..+...+.+-+...
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 46667777888899999999999998888 446677777666 8999999955678899999999998887654
No 264
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.86 E-value=1.3e+02 Score=33.65 Aligned_cols=142 Identities=15% Similarity=0.168 Sum_probs=93.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHhc-cChh----hHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123 167 IFTRLQIGGVEFKKKALESLLQLLK-DDDK----SAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK 241 (579)
Q Consensus 167 Lv~~L~~~~~~~~~~Al~~L~~l~~-~~~~----~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~ 241 (579)
+-+-|+..+.++|..|+..+.++-- .+|+ ....+++.. ...|..||. ++.|.+|..|..-++.+.. ....
T Consensus 179 l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~-d~~p~VRS~a~~gv~k~~s---~fWe 253 (1005)
T KOG1949|consen 179 LWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLE-DPYPMVRSTAILGVCKITS---KFWE 253 (1005)
T ss_pred HHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhc-CCCchHHHHHHHHHHHHHH---HHHH
Confidence 4455667799999999999988732 2222 223334333 567888999 9999999999888887766 5555
Q ss_pred HHHhcCCHHHHHHHHcc----CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 047123 242 IVFEEGGLGPLLRILET----GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNI 315 (579)
Q Consensus 242 ~i~~~g~l~~Lv~lL~~----~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL 315 (579)
.|-..-+...+-.+.++ ...+||......|-.+..+|.+...+ .-++++|-..+.+....++.++...|..+
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~l--e~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLL--EQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHH--HHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 54433333333333322 25578888888888888877654443 22445666667777888888888777555
No 265
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=66.72 E-value=98 Score=27.84 Aligned_cols=143 Identities=11% Similarity=0.140 Sum_probs=78.2
Q ss_pred CHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHH
Q 047123 330 AVPVLVQSLTSS-SNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAAR 408 (579)
Q Consensus 330 ~v~~Lv~lL~~~-~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~ 408 (579)
.++.|+++++.+ +..++..++.+|+.|-.-|+.....+....- .-. -..... .... ..+.+.......+.
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~~--~~~~~~--~~~~---~~l~~~~~~~~~ee 81 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SKS--SENSND--ESTD---ISLPMMGISPSSEE 81 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--ccc--cccccc--cchh---hHHhhccCCCchHH
Confidence 355677777554 6789999999999998777764332211110 000 000000 1111 11111111123334
Q ss_pred HHhhcCcHHHHHHHHHhcCCHHHH-HHHHHHHHHhc--CChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhc
Q 047123 409 ILSSTTSFIIQLGEFIKRGNVLLQ-QVSSSLLGNLS--ISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLT 484 (579)
Q Consensus 409 l~~~~~g~i~~L~~lL~~~~~~v~-~~A~~aL~~L~--~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~ 484 (579)
.... .++..|+..|++.+..-. ..+..++.++- .+......+.+-+|.+++.+++.. ...++.-..-|+.|..
T Consensus 82 ~y~~--vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~-~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 82 YYPT--VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCP-DSLREFYFQQLADLVS 157 (160)
T ss_pred HHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCC-HHHHHHHHHHHHHHHH
Confidence 4444 567778888876654333 34566666666 333343344444999999995444 4888887777776653
No 266
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=66.09 E-value=2.1e+02 Score=31.40 Aligned_cols=101 Identities=14% Similarity=0.085 Sum_probs=67.0
Q ss_pred hCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHH
Q 047123 203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAW 282 (579)
Q Consensus 203 ~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~ 282 (579)
.|.+..+++-++ +++..+|..+++.|..+.. .-.--...+-.|.+..|..-+-+..+.|+..|..+|+.+-....+-.
T Consensus 90 ~~~~~h~lRg~e-skdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 90 AGTFYHLLRGTE-SKDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHhccc-CcchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 345666777777 8999999999999999887 33222344445667777776666788899999999988764333222
Q ss_pred HHHhcCcHHHHHHHhcC-CCHHHHHHHH
Q 047123 283 AISAYGGVSVLIEAFRS-GTALTQSHAV 309 (579)
Q Consensus 283 ~i~~~g~i~~Lv~ll~~-~~~~~~~~a~ 309 (579)
.. ....|+.++++ ++.+++..|.
T Consensus 168 n~----~~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 168 NR----IVNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred HH----HHHHHHHHHhcCcHHHHHHHHH
Confidence 22 23455666665 3456666553
No 267
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=65.44 E-value=45 Score=28.53 Aligned_cols=70 Identities=11% Similarity=0.106 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH---HHHHHHhcc-------CCCCHhHHHHHHHHHHHhh
Q 047123 416 FIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC---MGSLIKLME-------CPKPVGLQEAATDAVLSLL 483 (579)
Q Consensus 416 ~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~---v~~Lv~lL~-------~~~~~~v~~~a~~aL~~L~ 483 (579)
++..|.+=|++.++-|+..++.+|..++ .+++.++.+.+. |..+...-. ++.+..||..|-+++..|-
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 4556777788888999999999999999 777888888777 666666543 2235678888888877765
Q ss_pred cC
Q 047123 484 TV 485 (579)
Q Consensus 484 ~~ 485 (579)
..
T Consensus 119 ~~ 120 (122)
T cd03572 119 SY 120 (122)
T ss_pred cc
Confidence 43
No 268
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=65.34 E-value=98 Score=28.58 Aligned_cols=110 Identities=19% Similarity=0.233 Sum_probs=58.8
Q ss_pred CHHHHHHH-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC-------------------cHHHHHHhhccCCCChHH
Q 047123 330 AVPVLVQS-LTSSSNLAQENAADCIATLAASGEYFRLLIIQER-------------------GLQRLMHLIQDSTSSIVT 389 (579)
Q Consensus 330 ~v~~Lv~l-L~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g-------------------~i~~Lv~ll~~~~~~~~~ 389 (579)
.-+.|+.. +.+.++.+|..|+.+|..|-.+...+=...-+.. .=..|+..+..... ...
T Consensus 40 ~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~-~~~ 118 (182)
T PF13251_consen 40 ATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKS-PPV 118 (182)
T ss_pred CCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc-cHH
Confidence 33444444 5788999999999999998765422211111111 01344444444432 245
Q ss_pred HHHHHHHHHHcccc-h---hHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123 390 VENALLAISSLSLS-D---SAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS 443 (579)
Q Consensus 390 ~~~A~~aL~~L~~~-~---~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~ 443 (579)
....+.++..|... + -...++. .++..+..++.+.|.+++..+..++..+.
T Consensus 119 l~q~lK~la~Lv~~tPY~rL~~~ll~---~~v~~v~~~l~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 119 LTQLLKCLAVLVQATPYHRLPPGLLT---EVVTQVRPLLRHRDPNVRVAALSCLGALL 173 (182)
T ss_pred HHHHHHHHHHHHccCChhhcCHhHHH---HHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 55666666666654 1 1112222 24444555556666677766666666554
No 269
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=65.32 E-value=31 Score=31.95 Aligned_cols=82 Identities=20% Similarity=0.221 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh
Q 047123 160 LVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDES 239 (579)
Q Consensus 160 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~ 239 (579)
+..+++.+++..-+.+..++..|+..+..+.+.+--+ =...+|.|+.|.. ++++.++..|...+..+...+++.
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-----P~~cvp~lIAL~t-s~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVN-----PKQCVPTLIALET-SPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-----hHHHHhHhhhhhC-CCChHHHHHHHHHHHHHHHHhHHH
Confidence 4457888888888999999999999998776532111 1225899999999 999999999999999998745544
Q ss_pred HHHHHhcC
Q 047123 240 RKIVFEEG 247 (579)
Q Consensus 240 ~~~i~~~g 247 (579)
...-..+|
T Consensus 80 v~~~~~~g 87 (187)
T PF12830_consen 80 VESRYSEG 87 (187)
T ss_pred HHHHHHHH
Confidence 44333333
No 270
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=65.24 E-value=1.8e+02 Score=30.28 Aligned_cols=129 Identities=13% Similarity=0.136 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHh--cCcHHHHHH-hhccCCCChHHHHHHHHHHHHcccch--------------h
Q 047123 343 NLAQENAADCIATLAASGEYFRLLIIQ--ERGLQRLMH-LIQDSTSSIVTVENALLAISSLSLSD--------------S 405 (579)
Q Consensus 343 ~~v~~~a~~~L~~La~~~~~~r~~l~~--~g~i~~Lv~-ll~~~~~~~~~~~~A~~aL~~L~~~~--------------~ 405 (579)
...+..|+..|..|+... ...+.. .+.+..++. +-.+.+.+...+..|+..+..|+... +
T Consensus 225 ~TrR~AA~dfl~~L~~~~---~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKF---EKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp -SHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred CCcHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 357888999999998632 222221 223333332 22233333577888999999988761 1
Q ss_pred HHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHH
Q 047123 406 AARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAV 479 (579)
Q Consensus 406 ~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL 479 (579)
...+... -+++-|. --.+..+-++..|++.+..... .-.+..+.+.++.+++.| .+++.-|.-.|+.++
T Consensus 302 v~~Ff~~--~v~peL~-~~~~~~piLka~aik~~~~Fr~-~l~~~~l~~~~~~l~~~L-~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQ--HVLPELQ-PDVNSHPILKADAIKFLYTFRN-QLPKEQLLQIFPLLVNHL-QSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHH--HTCHHHH--SS-S-HHHHHHHHHHHHHHGG-GS-HHHHHHHHHHHHHHT-TSS-HHHHHHHHHHH
T ss_pred HHHHHHH--HhHHHhc-ccCCCCcchHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHh-CCCCcchhhhhhhhC
Confidence 1222222 1222221 0014466677777777776651 112234444499999999 777888888887764
No 271
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=64.88 E-value=1.1e+02 Score=30.02 Aligned_cols=165 Identities=16% Similarity=0.107 Sum_probs=92.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123 162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK 241 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~ 241 (579)
..+.+|+..|+..++..+ ....+++.. .+++.+.||.|+.. .+++.+-..+++.|.+|+.. -+.
T Consensus 13 ~~LkdL~r~lr~dd~~~~-~v~r~lg~~---------~iv~~DLiPiL~~~---~~~~~l~~~~l~LLV~LT~P-~~~-- 76 (266)
T PF04821_consen 13 ECLKDLKRFLRRDDEDQR-DVRRQLGEW---------NIVQKDLIPILISY---KDDDKLFLACLRLLVNLTWP-IEL-- 76 (266)
T ss_pred HHHHHHHHHHHHhCcchH-HHHHHHHHh---------chhhhhHHHHHHhc---cCchHHHHHHHHHHHHhCCC-HHH--
Confidence 467888888888776654 444444332 23455666666543 34688889999999999872 111
Q ss_pred HHHhcCCHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcC-----------CCHHHHHHH
Q 047123 242 IVFEEGGLGPLLRILET--GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRS-----------GTALTQSHA 308 (579)
Q Consensus 242 ~i~~~g~l~~Lv~lL~~--~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~-----------~~~~~~~~a 308 (579)
+ .+. .+...+.........+. ..+.+|.+.+++..++.++.. .+..+.+.+
T Consensus 77 ----------~---~~~~~~~~~~~~~~~~l~~~l~---~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lv 140 (266)
T PF04821_consen 77 ----------L---VESQPKDKNQRRNIPELLKYLQ---SYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELV 140 (266)
T ss_pred ----------h---ccCCCCChHHHHHHHHHHHHHH---HHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHH
Confidence 1 111 12222333333333332 345666666666766665521 233678888
Q ss_pred HHHHHHhhcChhh-------------HH----HHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHHHHhc
Q 047123 309 VGAIRNIAAVEDI-------------KA----ALAEEGAVPVLVQSLTSS-SNLAQENAADCIATLAA 358 (579)
Q Consensus 309 ~~aL~nLs~~~~~-------------~~----~l~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~~La~ 358 (579)
+..++|+...++. +. .+.+.|+...|+.+.++. ...-....++++..+-.
T Consensus 141 L~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k 208 (266)
T PF04821_consen 141 LTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFK 208 (266)
T ss_pred HHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHc
Confidence 8999999654221 22 233567777776666554 22233355555555544
No 272
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=64.67 E-value=1.8e+02 Score=37.80 Aligned_cols=264 Identities=15% Similarity=0.126 Sum_probs=133.0
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCc--HHHHHHH-----hcCCCHHHHHHHHHHHHHhhcChhhHHHHH
Q 047123 254 RILETGSMPLKEKAAIGVEAITTDPENAWAISAYGG--VSVLIEA-----FRSGTALTQSHAVGAIRNIAAVEDIKAALA 326 (579)
Q Consensus 254 ~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~--i~~Lv~l-----l~~~~~~~~~~a~~aL~nLs~~~~~~~~l~ 326 (579)
.++...+.+++..++..++.+-....++........ +..++.. +.+.++.++......+. ..--....
T Consensus 488 ~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~-----~~~~~~la 562 (2341)
T KOG0891|consen 488 SYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN-----ERFDAQLA 562 (2341)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc-----cchhhhhc
Confidence 334455778888887666665543333211111111 2222221 22344444333332222 11111233
Q ss_pred HcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--h
Q 047123 327 EEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--D 404 (579)
Q Consensus 327 ~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~ 404 (579)
+.+.+..+...+.++.-.+++.+...+++++..++...-.-...-.+..+-.+-.++.. ...+....-+..+... .
T Consensus 563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~--r~~~~~a~~~~~~i~~~~~ 640 (2341)
T KOG0891|consen 563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMA--RTKEESAKLLCELIISSPV 640 (2341)
T ss_pred CchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchH--HhHHHHHHHhhHHHHHHHH
Confidence 34445555556666777888888888888888665322111111122222222222221 2222222222221111 1
Q ss_pred hHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHh
Q 047123 405 SAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSL 482 (579)
Q Consensus 405 ~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L 482 (579)
.....++ ..+..++..+...+..+...+...+..|+ ...+.+....+.++.+.+.+.+..+..-+.++..+++++
T Consensus 641 ~i~~~v~---~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l 717 (2341)
T KOG0891|consen 641 LISPYVG---PILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQL 717 (2341)
T ss_pred HHHhhcC---chHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhh
Confidence 1222222 34566677778888888899999999999 333454455533777777775666677789999999999
Q ss_pred hcCCcc-hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhC
Q 047123 483 LTVRSN-RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG 527 (579)
Q Consensus 483 ~~~~~~-~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~ 527 (579)
.....- ........-.+..+...+.+......+..++..+..+..
T Consensus 718 ~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~ 763 (2341)
T KOG0891|consen 718 ESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGA 763 (2341)
T ss_pred hcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcc
Confidence 764321 222222233445555555554444455555555554443
No 273
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=64.63 E-value=2.3e+02 Score=31.35 Aligned_cols=133 Identities=23% Similarity=0.197 Sum_probs=79.0
Q ss_pred cHHHHHHhhccCC--CChHHHHHHHHHHHHcccc-----hhH-HHHHhhcCcHHHHHHHHH----hcCCHHHHHHHHHHH
Q 047123 372 GLQRLMHLIQDST--SSIVTVENALLAISSLSLS-----DSA-ARILSSTTSFIIQLGEFI----KRGNVLLQQVSSSLL 439 (579)
Q Consensus 372 ~i~~Lv~ll~~~~--~~~~~~~~A~~aL~~L~~~-----~~~-~~l~~~~~g~i~~L~~lL----~~~~~~v~~~A~~aL 439 (579)
.+..+..++++.. ....++..|.-++.++... +.+ ..+++ .+++.+...| ..++.+.+....++|
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~LkaL 470 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLE---ELLKYLHELLQQAVSKGDEEEIQLYLKAL 470 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHH---HHHHHHHHHHHHHHhcCCchheeeHHHhh
Confidence 4667777776542 2246777777777777653 111 12222 3555555555 345667778889999
Q ss_pred HHhcCChhhHHHHHHHHHHHHHhcc--CCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchh-hhhH
Q 047123 440 GNLSISDGNKRAVASCMGSLIKLME--CPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEA-LNKK 516 (579)
Q Consensus 440 ~~L~~~~~~~~~i~~~v~~Lv~lL~--~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~-~~k~ 516 (579)
+|+..... ++.|...+. ...+..+|..|+.||..++...+ ....+.++++..+...+ .+|.
T Consensus 471 GN~g~~~~--------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p--------~~v~~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 471 GNAGHPSS--------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP--------RKVQEVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred hccCChhH--------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc--------hHHHHHHHHHHcCCCCChHHHH
Confidence 99985444 556666662 23467899999999998875321 23345566666554333 2554
Q ss_pred HHHHHHH
Q 047123 517 FPVMVTA 523 (579)
Q Consensus 517 ~av~~L~ 523 (579)
.|+.+|+
T Consensus 535 aA~~~lm 541 (574)
T smart00638 535 AAVLVLM 541 (574)
T ss_pred HHHHHHH
Confidence 5444333
No 274
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.04 E-value=47 Score=33.12 Aligned_cols=143 Identities=12% Similarity=0.095 Sum_probs=85.3
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 047123 206 VGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAIS 285 (579)
Q Consensus 206 v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~ 285 (579)
+...+..|. +.+.+....++..|..|+.-+++....+.. .+|-.+++-+++....+-..|+.++..+..+-.+...-.
T Consensus 90 l~~~l~~L~-s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 90 LKQALKKLS-SDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHhc-hHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555 666666666666777666645555544443 346677788888888888999999988875332222111
Q ss_pred hcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 047123 286 AYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATL 356 (579)
Q Consensus 286 ~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L 356 (579)
-.+.+..|..--...+.-+++.|-.+|..+..+-.-. -+++.|+..+...++.++..++.+..+.
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 1222222222212234467888888888776643222 2456666777777788877777665543
No 275
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=63.84 E-value=3.7e+02 Score=33.47 Aligned_cols=332 Identities=15% Similarity=0.159 Sum_probs=149.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH-
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK- 241 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~- 241 (579)
....++..+..-....+.+...+|=+++.++. ...++..|..++. + ++......+.+|++|.- +++...
T Consensus 193 l~~kl~~~l~~ap~~lq~eiI~~LPeIl~ds~-------h~~v~~~L~~ll~-~-~~~L~~~iLd~Ls~L~L-s~~~l~~ 262 (1426)
T PF14631_consen 193 LTDKLFEVLSIAPVELQKEIISSLPEILDDSQ-------HDEVVEELLELLQ-E-NPELTVPILDALSNLNL-SPELLEE 262 (1426)
T ss_dssp HHHHHHHHHHHS-TTTHHHHHHTHHHHS-GGG-------HHHHHHHHHHHHH-H--STTHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhcchh-------HHHHHHHHHHHHh-c-CCchhhhHHHHHhcCCC-CHHHHHH
Confidence 34455555555555566677777766664331 1234677778776 3 33445667888888887 666543
Q ss_pred ---HHHh------cCCHHHHHHHHccC--CHHHHHHHHHHHHHhcCC----C----ccHHHHHh--------------cC
Q 047123 242 ---IVFE------EGGLGPLLRILETG--SMPLKEKAAIGVEAITTD----P----ENAWAISA--------------YG 288 (579)
Q Consensus 242 ---~i~~------~g~l~~Lv~lL~~~--~~~v~~~aa~~L~~Ls~~----~----~~~~~i~~--------------~g 288 (579)
.+++ ...+|.+++.|=.. ..+..+.....-.+|-.. + .....+-. .+
T Consensus 263 vr~~vl~~L~s~~~e~LP~lirFLL~s~t~~da~evI~~LR~~L~~~~~v~~~~~~~s~~~~k~~~~~~~~~~~~~s~~~ 342 (1426)
T PF14631_consen 263 VREKVLEKLSSVDLEDLPVLIRFLLQSITPSDAVEVISELRENLDFEQCVLPSRIQASQRKLKNKGNASSSGNQENSSQD 342 (1426)
T ss_dssp HHHHHHHSTTSS-TTHHHHHHHHHHHS-SSTTHHHHHHHHHHHHH-------------------------------HHHH
T ss_pred HHHHHHHHHhcCChhhhHHHHHHHHHhCCcccHHHHHHHHHHHccccccccchhhcccccccccCccccccccccccccc
Confidence 3332 23588899888542 222222222222222100 0 00000000 01
Q ss_pred cHHHHHHHhcCC---CHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChhhH
Q 047123 289 GVSVLIEAFRSG---TALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSL-TSSSNLAQENAADCIATLAASGEYFR 364 (579)
Q Consensus 289 ~i~~Lv~ll~~~---~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL-~~~~~~v~~~a~~~L~~La~~~~~~r 364 (579)
....+++.++++ ...+-+..+.++.++.... ++.+++.++-++ .+.+..-+..+-..+.+-...+ ...
T Consensus 343 ~~~lil~~lks~lr~~k~l~eawiK~I~~~~~~~-------~hkv~Dl~lLlil~s~~~~~~k~ie~ilkkKI~~g-~it 414 (1426)
T PF14631_consen 343 CEKLILDVLKSGLRFSKDLSEAWIKAIESLEDAS-------DHKVIDLWLLLILYSINEDNRKSIEKILKKKIKSG-HIT 414 (1426)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHGGGST-------T--THHHHHHHHHHHH-HHHHHHHHHHHHHHHTTT--S-
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHhcCCCcc-------ccchHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-ccc
Confidence 123344444432 2334444455555543211 233566655543 3334444555555556554432 222
Q ss_pred HHHHh----------cCcHHHHHHh----hccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHH
Q 047123 365 LLIIQ----------ERGLQRLMHL----IQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVL 430 (579)
Q Consensus 365 ~~l~~----------~g~i~~Lv~l----l~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~ 430 (579)
..+.+ ....+.++.+ +.+.. +.++..+......+=..- +..... .++..|+..+-++...
T Consensus 415 ~~ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e--~~v~~FG~~~Y~~lF~~f--ds~~qq--eVv~~Lvthi~sg~~~ 488 (1426)
T PF14631_consen 415 EQLLDQTFKGHSEVLKDYFPSILSLAQSLLRSKE--PSVREFGSHLYKYLFKEF--DSYCQQ--EVVGALVTHIGSGNSQ 488 (1426)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSS--HHHHHHHHHHHHHHHHSS---HHHHH--HHHHHHHHHHHH--HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHhhc--cchhHH--HHHHHHHHHHcCCcHH
Confidence 22211 2334555554 33333 355555554444332221 122233 5677788888777776
Q ss_pred HHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCC
Q 047123 431 LQQVSSSLLGNLS-ISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPK 509 (579)
Q Consensus 431 v~~~A~~aL~~L~-~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~ 509 (579)
-...|..+|..|+ .+++.-..+...+..++..+ +.=+..-.......|+.|+.........+++ ..-..+-+.|.+.
T Consensus 489 ev~~aL~vL~~L~~~~~~~l~~fa~~l~giLD~l-~~Ls~~qiR~lf~il~~La~~~~~~~s~i~d-el~ivIRKQLss~ 566 (1426)
T PF14631_consen 489 EVDAALDVLCELAEKNPSELQPFATFLKGILDYL-DNLSLQQIRKLFDILCTLAFSDSSSSSSIQD-ELHIVIRKQLSSS 566 (1426)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHTHHHHHGGGGGG-GG--HHHHHHHHHHHHHHHHHHSS---HHHH-HHHHHHHHHHT-S
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCCcccchhhHH-HHHHHHHHhhcCC
Confidence 6678999999998 44443333322255556656 3323333344577777777543221222322 2223355666666
Q ss_pred chhhhhHHHHH
Q 047123 510 NEALNKKFPVM 520 (579)
Q Consensus 510 ~~~~~k~~av~ 520 (579)
+...-+.-.++
T Consensus 567 ~~~~K~~GIIG 577 (1426)
T PF14631_consen 567 NPKYKRIGIIG 577 (1426)
T ss_dssp SHHHHHHHHHH
T ss_pred cHHHHHHhHHH
Confidence 65533333333
No 276
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=63.06 E-value=54 Score=28.47 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=56.4
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccCCCCHh-HHHHHHHHHHHhhcCC
Q 047123 415 SFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMECPKPVG-LQEAATDAVLSLLTVR 486 (579)
Q Consensus 415 g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~~~~~~-v~~~a~~aL~~L~~~~ 486 (579)
.++..|.+-|.++++.++..|+.+|-.+. ..+.....+... +..|.+++....+.. |+..+...+..-+...
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 45666777788999999999999999988 456777777766 889999984444434 8999999888887644
No 277
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=60.82 E-value=1.4e+02 Score=27.57 Aligned_cols=154 Identities=15% Similarity=0.163 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhcc-Chh----hHHHHH-h-----hCcHHHHHH-hhccCCCHHHHHHHHHHHHHhhccChhhHHHHHh
Q 047123 178 FKKKALESLLQLLKD-DDK----SAAVVA-K-----EGNVGYLIS-LLDFHHQSSIREQAVLALSIIVSANDESRKIVFE 245 (579)
Q Consensus 178 ~~~~Al~~L~~l~~~-~~~----~~~~i~-~-----~g~v~~Lv~-LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~ 245 (579)
+|..|+.+|..+++. +++ +...+. + ...-+.|+. ++. ++++.+|..|+.+|..|-.+ .+..+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~-Dp~~kvR~aA~~~l~~lL~g---sk~~L~- 76 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILK-DPSPKVRAAAASALAALLEG---SKPFLA- 76 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHc-CCchhHHHHHHHHHHHHHHc---cHHHHH-
Confidence 577788888888876 332 222332 1 224555665 455 88999999999999998871 222222
Q ss_pred cCCHHHHHHHHccCC------HHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhc-
Q 047123 246 EGGLGPLLRILETGS------MPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSG-TALTQSHAVGAIRNIAA- 317 (579)
Q Consensus 246 ~g~l~~Lv~lL~~~~------~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLs~- 317 (579)
.-++.. ...-...+..+.. .-..|+..++.+ +..+....+.++..+..
T Consensus 77 ---------~Ae~~~~~~~sFtslS~tLa~~i~~---------------lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~ 132 (182)
T PF13251_consen 77 ---------QAEESKGPSGSFTSLSSTLASMIME---------------LHRGLLLALQAEKSPPVLTQLLKCLAVLVQA 132 (182)
T ss_pred ---------HHHhcCCCCCCcccHHHHHHHHHHH---------------HHHHHHHHHhcccccHHHHHHHHHHHHHHcc
Confidence 111100 0011111111111 224566666654 55677788888888866
Q ss_pred ChhhHHHHH-HcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 047123 318 VEDIKAALA-EEGAVPVLVQSLTSSSNLAQENAADCIATLAASG 360 (579)
Q Consensus 318 ~~~~~~~l~-~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~ 360 (579)
.|-.|.... -...+..+..++.+.+.+++..++.++..+....
T Consensus 133 tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 133 TPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 343333210 1123444555567788899999999999887644
No 278
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=60.76 E-value=75 Score=31.59 Aligned_cols=70 Identities=16% Similarity=0.111 Sum_probs=48.6
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHH--HHHhcCcHHHHHH----Hhc--------CCCHHHHHHHHHHHH
Q 047123 248 GLGPLLRILETGSMPLKEKAAIGVEAITTDPENAW--AISAYGGVSVLIE----AFR--------SGTALTQSHAVGAIR 313 (579)
Q Consensus 248 ~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~--~i~~~g~i~~Lv~----ll~--------~~~~~~~~~a~~aL~ 313 (579)
++|+++.++++.++.++..++.+|..+...-.... .+.+.|....+-+ .|. .++..+...+..+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 59999999999999999999999999986433222 3455664443333 343 334467777777777
Q ss_pred Hhhc
Q 047123 314 NIAA 317 (579)
Q Consensus 314 nLs~ 317 (579)
.|..
T Consensus 200 ~L~~ 203 (282)
T PF10521_consen 200 SLLK 203 (282)
T ss_pred HHHH
Confidence 7743
No 279
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.04 E-value=2.9e+02 Score=30.92 Aligned_cols=249 Identities=12% Similarity=0.060 Sum_probs=134.2
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccHHHH
Q 047123 206 VGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETG-SMPLKEKAAIGVEAITTDPENAWAI 284 (579)
Q Consensus 206 v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~aa~~L~~Ls~~~~~~~~i 284 (579)
++.|++-|-.+.|+..|..|-.+|..++. +++|-... --+|+.| .+-.+..|+.+|.++......-...
T Consensus 7 Le~lCk~LY~s~D~~~R~~AE~~L~e~s~-speclskC---------qlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~ 76 (1082)
T KOG1410|consen 7 LESLCKDLYESTDPTARHRAEKALAELSE-SPECLSKC---------QLLLERGSYPYSQMLASTCLMKLVSRKTPLPLE 76 (1082)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHcc-CHHHHHHH---------HHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHH
Confidence 34455433327889999999999999999 88875432 2233333 4566778888888887543211111
Q ss_pred HhcCcHHHHHHHhcCCCHHHHHHHHHHH----HHhh---cChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047123 285 SAYGGVSVLIEAFRSGTALTQSHAVGAI----RNIA---AVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLA 357 (579)
Q Consensus 285 ~~~g~i~~Lv~ll~~~~~~~~~~a~~aL----~nLs---~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La 357 (579)
.+..+-..+++.+..+.|+..-..+.+| +.+. ..+..+...+-...|..+.+.++.++.+-..-++..|..|.
T Consensus 77 qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLv 156 (1082)
T KOG1410|consen 77 QRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLV 156 (1082)
T ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 2223345677778776665444444333 3333 24455555555557777777777766554455555555553
Q ss_pred c-------CChh--hHHHHHh--cCcH----HHHHHhhccC---CCChH----HHHHHHHHHHHcccc------------
Q 047123 358 A-------SGEY--FRLLIIQ--ERGL----QRLMHLIQDS---TSSIV----TVENALLAISSLSLS------------ 403 (579)
Q Consensus 358 ~-------~~~~--~r~~l~~--~g~i----~~Lv~ll~~~---~~~~~----~~~~A~~aL~~L~~~------------ 403 (579)
. .++. .|....+ ...+ ..-..+++.. +-+++ +...+...-.|+...
T Consensus 157 qemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEsse 236 (1082)
T KOG1410|consen 157 QEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDESSE 236 (1082)
T ss_pred HHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccccccccc
Confidence 2 1111 1111111 1111 1111112111 11112 222222222221110
Q ss_pred ---------hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc------CChhhHHHHHHH-HHHHHHhccCC
Q 047123 404 ---------DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS------ISDGNKRAVASC-MGSLIKLMECP 466 (579)
Q Consensus 404 ---------~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~------~~~~~~~~i~~~-v~~Lv~lL~~~ 466 (579)
.=+..+.+. ..+..+.++..+-.+..-+.+..+|..++ .|...|..+... ++-..+++++.
T Consensus 237 d~ctVQIPTsWRs~f~d~--stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~il~np 313 (1082)
T KOG1410|consen 237 DLCTVQIPTSWRSSFLDS--STLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRILENP 313 (1082)
T ss_pred cccceecCcHHHHHhcCc--hHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 113344455 67888888888888888888888888887 344556666665 77777777544
No 280
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=57.36 E-value=2e+02 Score=28.28 Aligned_cols=214 Identities=13% Similarity=0.071 Sum_probs=120.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhc-cCCCHHHHHHHHHHHHHhhccChhhHHHHH
Q 047123 166 DIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLD-FHHQSSIREQAVLALSIIVSANDESRKIVF 244 (579)
Q Consensus 166 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~-~~~~~~~~~~A~~aL~~La~~~~~~~~~i~ 244 (579)
.|=..|-++++..|.+|+..|..+...-+... ....-|..|+.+.. +-.|......++.++..|.. .......
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~-~~~~~~~-- 76 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVK-MKNFSPE-- 76 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHh-CcCCChh--
Confidence 34456778899999999999999876555332 22233666776543 12355555555777776665 3332111
Q ss_pred hcCCHHHHHHHHcc------CCHHHHHHHHHHHHHhcCCCccHHHHHh--cCcHHHHHHHhcC-CCHHHHHHHHHHHHHh
Q 047123 245 EEGGLGPLLRILET------GSMPLKEKAAIGVEAITTDPENAWAISA--YGGVSVLIEAFRS-GTALTQSHAVGAIRNI 315 (579)
Q Consensus 245 ~~g~l~~Lv~lL~~------~~~~v~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nL 315 (579)
....+++.+-+ -....|..+-..|..|..+. ...+.. .+.+..+++.+.. .||.....+...+..+
T Consensus 77 ---~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i 151 (262)
T PF14500_consen 77 ---SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVI 151 (262)
T ss_pred ---hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 13333333221 13456777777777776542 233333 3467778888776 4888777777777766
Q ss_pred hcChhhHHHHHHcCCHHHHHHHhc---------C-CCH--HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccC
Q 047123 316 AAVEDIKAALAEEGAVPVLVQSLT---------S-SSN--LAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDS 383 (579)
Q Consensus 316 s~~~~~~~~l~~~g~v~~Lv~lL~---------~-~~~--~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~ 383 (579)
...-+. ....+.+...+. . +++ -.++.-...|.+.-...+.+ ..-+++.|++-|.+.
T Consensus 152 ~~~~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~ 220 (262)
T PF14500_consen 152 LQEFDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDST 220 (262)
T ss_pred HHhccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCC
Confidence 542221 112223333321 1 122 12233333333332222222 234688899988888
Q ss_pred CCChHHHHHHHHHHHHcccc
Q 047123 384 TSSIVTVENALLAISSLSLS 403 (579)
Q Consensus 384 ~~~~~~~~~A~~aL~~L~~~ 403 (579)
.. .++..++.+|..++..
T Consensus 221 ~~--~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 221 SP--SVKLDSLQTLKACIEN 238 (262)
T ss_pred Cc--HHHHHHHHHHHHHHHH
Confidence 76 7889999888887765
No 281
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=57.22 E-value=96 Score=25.90 Aligned_cols=72 Identities=18% Similarity=0.121 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhhCcHHHHHHhhc-----cCCCHHHHHHHHHHHHHh
Q 047123 161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKD-DDKSAAVVAKEGNVGYLISLLD-----FHHQSSIREQAVLALSII 232 (579)
Q Consensus 161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~LL~-----~~~~~~~~~~A~~aL~~L 232 (579)
...+..+..+|++.++.++..|+..|-.+++. ++.+...+....++..++++.. ...+..+|+.+...+...
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 34678888999999999999999999999874 4566677777777777766411 123578888888777654
No 282
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=56.21 E-value=2.5e+02 Score=29.13 Aligned_cols=255 Identities=11% Similarity=0.038 Sum_probs=132.2
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHhcC---CHHHHHHHHccC--CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHH
Q 047123 218 QSSIREQAVLALSIIVSANDESRKIVFEEG---GLGPLLRILETG--SMPLKEKAAIGVEAITTDPENAWAISAYGGVSV 292 (579)
Q Consensus 218 ~~~~~~~A~~aL~~La~~~~~~~~~i~~~g---~l~~Lv~lL~~~--~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~ 292 (579)
+..+..+|+++|+.+-. +++....+-+.- .+...+..+..+ +..+.....++|..=...+. +.....+..
T Consensus 59 ~~~L~~qALkll~~~l~-~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~----~~~~~~~~~ 133 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLY-HPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPK----IMTSDRVER 133 (372)
T ss_pred chHHHHHHHHHHHHHHc-cHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCc----ccchhhHHH
Confidence 45777899999999988 777766654432 455666666554 34455555555544222222 333333444
Q ss_pred HHHHhc-----CCCHHHHHHHHHHHHHhhcChhhHHHHHHc--CCHHHHHHHhcCCCHHHHHHHHHHHHHHhc--CC-hh
Q 047123 293 LIEAFR-----SGTALTQSHAVGAIRNIAAVEDIKAALAEE--GAVPVLVQSLTSSSNLAQENAADCIATLAA--SG-EY 362 (579)
Q Consensus 293 Lv~ll~-----~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~--g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~--~~-~~ 362 (579)
++..+. .++..+....+.++.++.... +..|.+. --++.++..+-+....++..|..++..+.. +. ..
T Consensus 134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~--p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~ 211 (372)
T PF12231_consen 134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQF--PQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKE 211 (372)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHH
Confidence 444332 345567778888888886522 2233322 246666666656666777776666555532 11 11
Q ss_pred hHHH---HHh----cC-----cHHHHHHhhcc-CCCChHHHHHHHHHHHHcccchh--HHHHHhhcCcHHHHHHHHHhcC
Q 047123 363 FRLL---IIQ----ER-----GLQRLMHLIQD-STSSIVTVENALLAISSLSLSDS--AARILSSTTSFIIQLGEFIKRG 427 (579)
Q Consensus 363 ~r~~---l~~----~g-----~i~~Lv~ll~~-~~~~~~~~~~A~~aL~~L~~~~~--~~~l~~~~~g~i~~L~~lL~~~ 427 (579)
.... ..+ .+ ..+.|..++.+ +....-.+...+-++. -.... .-.... ..+...-..++++
T Consensus 212 ~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~L--L~~~~~~~w~~~n---~wL~v~e~cFn~~ 286 (372)
T PF12231_consen 212 LSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILL--LGSSRLDSWEHLN---EWLKVPEKCFNSS 286 (372)
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHH--hCCchhhccHhHh---HHHHHHHHHhcCC
Confidence 1111 111 12 22335555655 3321122222221111 11111 011111 2333444456788
Q ss_pred CHHHHHHHHHHHHHhc----CChhhHHHHHHH-HHHHHHhccCCCCH----hHHHHHHHHHHHhhc
Q 047123 428 NVLLQQVSSSLLGNLS----ISDGNKRAVASC-MGSLIKLMECPKPV----GLQEAATDAVLSLLT 484 (579)
Q Consensus 428 ~~~v~~~A~~aL~~L~----~~~~~~~~i~~~-v~~Lv~lL~~~~~~----~v~~~a~~aL~~L~~ 484 (579)
++.+|..|..+=..+. .++...+..... ..++..-++..... +++..+...++++.-
T Consensus 287 d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 287 DPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 9999998887755555 333333444444 45555555444334 778888888888763
No 283
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=56.20 E-value=1.3e+02 Score=26.73 Aligned_cols=71 Identities=21% Similarity=0.259 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhc
Q 047123 472 QEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAE 551 (579)
Q Consensus 472 ~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~ 551 (579)
+..|.+.|+.+.. ...|.+|+++|.++++. ....++.+|.+ .+.=.+.+..+..+.+
T Consensus 80 ~~~Av~LLGtM~G-----------GYNV~~LI~~L~~~d~~-lA~~Aa~aLk~-----------TlLvyDaf~dv~~~ak 136 (154)
T PF11791_consen 80 PAEAVELLGTMLG-----------GYNVQPLIDLLKSDDEE-LAEEAAEALKN-----------TLLVYDAFNDVAELAK 136 (154)
T ss_dssp HHHHHHHHTTS-S-----------STTHHHHHHGG--G-TT-THHHHHHHHHT-------------TTCCHHHHHHHHHH
T ss_pred HHHHHHHHhhccC-----------CCcHHHHHHHHcCCcHH-HHHHHHHHHHh-----------hHHHHhhHHHHHHHHH
Confidence 5666676666543 45789999999777766 44444444432 2223556888888888
Q ss_pred cCCchHHHHHHHHhc
Q 047123 552 TEVPGAKKVLQRLAG 566 (579)
Q Consensus 552 ~~~~~ak~~~~~l~~ 566 (579)
. ++-||++++.-..
T Consensus 137 ~-N~~Ak~VleSWA~ 150 (154)
T PF11791_consen 137 A-NAYAKEVLESWAN 150 (154)
T ss_dssp T--HHHHHHHHHHHT
T ss_pred c-CHHHHHHHHHHhh
Confidence 8 8889998886543
No 284
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=56.08 E-value=1.2e+02 Score=30.24 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=46.5
Q ss_pred cHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH-HHHHhcCCHHHHHHHHcc------------CCHHHHHHHHHHH
Q 047123 205 NVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR-KIVFEEGGLGPLLRILET------------GSMPLKEKAAIGV 271 (579)
Q Consensus 205 ~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~-~~i~~~g~l~~Lv~lL~~------------~~~~v~~~aa~~L 271 (579)
++|.++.+++ +.++.++..++.+|..+....+... ..+.+.|..+.+-..+.. .+..+...+--+|
T Consensus 120 iiP~iL~llD-D~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLD-DYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhc-CCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 4899999999 9999999999999999987333332 235566655555444432 2344555555566
Q ss_pred HHhc
Q 047123 272 EAIT 275 (579)
Q Consensus 272 ~~Ls 275 (579)
..|.
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 5553
No 285
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=56.07 E-value=5.4e+02 Score=32.86 Aligned_cols=295 Identities=9% Similarity=0.009 Sum_probs=150.8
Q ss_pred HHHHHHHHHHhhccChhhHHHHHhcCCH----HHHHHHHccCCHHHHHHHHHHHHHhcC----CCccHHHHHhcCcHHHH
Q 047123 222 REQAVLALSIIVSANDESRKIVFEEGGL----GPLLRILETGSMPLKEKAAIGVEAITT----DPENAWAISAYGGVSVL 293 (579)
Q Consensus 222 ~~~A~~aL~~La~~~~~~~~~i~~~g~l----~~Lv~lL~~~~~~v~~~aa~~L~~Ls~----~~~~~~~i~~~g~i~~L 293 (579)
+..++.-|..++. ..-.|-.++-...- +.++++-.+.+..+...|...|..|+. .++....-.+...++++
T Consensus 1109 r~FsLqKLveIa~-~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPf 1187 (1780)
T PLN03076 1109 RVFSLTKIVEIAH-YNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPF 1187 (1780)
T ss_pred chhHHHHHHHHHH-hcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHH
Confidence 3344555555555 33334444333322 223333333466778888888888883 22211111234467888
Q ss_pred HHHhcC-CCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhc----CCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 047123 294 IEAFRS-GTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLT----SSSNLAQENAADCIATLAASGEYFRLLII 368 (579)
Q Consensus 294 v~ll~~-~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~----~~~~~v~~~a~~~L~~La~~~~~~r~~l~ 368 (579)
..++.. .+.++++..+.++.++..... ..+ .. +.+.++.++. +.++.+...+-.++..+..+. . ..+.
T Consensus 1188 e~im~~s~~~eVrE~ILeCv~qmI~s~~--~nI-kS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~--f-~~l~ 1260 (1780)
T PLN03076 1188 VIVMRKSNAVEIRELIIRCVSQMVLSRV--NNV-KS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREY--F-PYIT 1260 (1780)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHH--hhh-hc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhh--h-hhcc
Confidence 876664 567999999999988854211 112 22 5555555553 456778888888887766421 1 1111
Q ss_pred h------cCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hh-HH-------------------------------H
Q 047123 369 Q------ERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DS-AA-------------------------------R 408 (579)
Q Consensus 369 ~------~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~-~~-------------------------------~ 408 (579)
. ..+|.+|..+...... ..+--.|...||+++.. .. .. .
T Consensus 1261 ~~~~~~F~DlV~cL~~Fa~q~~~-~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1339 (1780)
T PLN03076 1261 ETETTTFTDCVNCLIAFTNSRFN-KDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKD 1339 (1780)
T ss_pred ccchhHHHHHHHHHHHHHhCcCc-ccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccch
Confidence 0 2345666666644432 35667788888876433 00 00 0
Q ss_pred HHhhcCcHHHHHHH---HHhcCCHHHHHHHHHHHHHhc--C----ChhhHHHHHHH-HHHHHHhccCC------------
Q 047123 409 ILSSTTSFIIQLGE---FIKRGNVLLQQVSSSLLGNLS--I----SDGNKRAVASC-MGSLIKLMECP------------ 466 (579)
Q Consensus 409 l~~~~~g~i~~L~~---lL~~~~~~v~~~A~~aL~~L~--~----~~~~~~~i~~~-v~~Lv~lL~~~------------ 466 (579)
.... ..++.|.. +......+||..|...|..+- . +++.-..+... +.++...++..
T Consensus 1340 ~~~~--lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~ 1417 (1780)
T PLN03076 1340 DHLY--FWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQ 1417 (1780)
T ss_pred hHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 0001 24444333 345678899999999888776 2 33344444443 44444433110
Q ss_pred ----C--CHh----HHHHHHHHHHHhhcCCcchhHHHhh--cccHHHHHhhcCCCchhhhhHHHHHHHHHHhCC
Q 047123 467 ----K--PVG----LQEAATDAVLSLLTVRSNRKELVRD--EKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGG 528 (579)
Q Consensus 467 ----~--~~~----v~~~a~~aL~~L~~~~~~~~~~~~~--~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~ 528 (579)
. +.+ +.+-+..+|.++..-....-..+.. .+.+..|..+....++. ..+..+.||..|...
T Consensus 1418 ~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~-la~ig~~~l~~li~~ 1490 (1780)
T PLN03076 1418 GVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQS-LAGIGIAAFVRLMSN 1490 (1780)
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH-HHHHHHHHHHHHHHH
Confidence 0 000 2345555555555433322222210 22233344444444433 556667777777643
No 286
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=55.57 E-value=36 Score=34.10 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=48.5
Q ss_pred CchhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccCh--------------hhHHHHHhhCcHHHHHHhhc
Q 047123 155 SHKQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDD--------------KSAAVVAKEGNVGYLISLLD 214 (579)
Q Consensus 155 a~~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~--------------~~~~~i~~~g~v~~Lv~LL~ 214 (579)
+..+.-..+|..++..|..++.+.|..|+.+|..++.+.- .|...+.+.|+++.|+.+|.
T Consensus 53 ~~~~~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 53 LSFDQRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred cchhhHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3444556789999999999999999999999999976543 45666778889999998886
No 287
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=54.07 E-value=1e+02 Score=27.04 Aligned_cols=72 Identities=13% Similarity=0.039 Sum_probs=56.3
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccC-----CCCHhHHHHHHHHHHHhhcC
Q 047123 415 SFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMEC-----PKPVGLQEAATDAVLSLLTV 485 (579)
Q Consensus 415 g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~-----~~~~~v~~~a~~aL~~L~~~ 485 (579)
.++..+.+-|.++++.++..|+.+|-.+. ..+..+..+... +..|++++.. ..+..|+......+..-+..
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45666777788999999999999999888 556777777765 8889998832 24689999999888887754
Q ss_pred C
Q 047123 486 R 486 (579)
Q Consensus 486 ~ 486 (579)
.
T Consensus 118 f 118 (139)
T cd03567 118 L 118 (139)
T ss_pred h
Confidence 3
No 288
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=53.78 E-value=2.2e+02 Score=27.72 Aligned_cols=91 Identities=21% Similarity=0.331 Sum_probs=55.8
Q ss_pred HHHcCCHHHHHHHhcCCCHH--------HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHH
Q 047123 325 LAEEGAVPVLVQSLTSSSNL--------AQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLA 396 (579)
Q Consensus 325 l~~~g~v~~Lv~lL~~~~~~--------v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~a 396 (579)
+.+..+.+.++++++..+.. +.+....+++.++ .|-++.|.+++.+..-..-+|..|..+
T Consensus 69 ~re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~a 136 (249)
T PF06685_consen 69 FREERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISA 136 (249)
T ss_pred HhhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 34556889999999654431 2222222222222 566788888888877556889999999
Q ss_pred HHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHH
Q 047123 397 ISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVL 430 (579)
Q Consensus 397 L~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~ 430 (579)
|..++.. ..+..++.. +-..+-..+...+..
T Consensus 137 L~~l~~~~~~~Re~vi~~---f~~ll~~~l~~~~~~ 169 (249)
T PF06685_consen 137 LAFLVHEGPISREEVIQY---FRELLNYFLERNPSF 169 (249)
T ss_pred HHHHHHcCCCCHHHHHHH---HHHHHHHHhccCchH
Confidence 9999987 446666654 333333335444444
No 289
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=53.72 E-value=3e+02 Score=29.43 Aligned_cols=80 Identities=18% Similarity=0.178 Sum_probs=51.2
Q ss_pred cCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhh
Q 047123 426 RGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQM 505 (579)
Q Consensus 426 ~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~l 505 (579)
.-+..|+...+.|+..+..-|+ .+..-|..|+.-++..++..+|..++.+|..|......++.-- .++.|..|..+
T Consensus 287 ~~~~~V~Aa~A~A~v~l~~lP~---KLnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~~rkp~P-ndKIvkNLc~f 362 (441)
T PF12054_consen 287 SRDVRVLAAAASALVALGGLPK---KLNPIIRPLMDSIKREENELLQQRSAESLARLIQLCVDRKPCP-NDKIVKNLCTF 362 (441)
T ss_pred HHHHHHHHHHHHHHHHhccCCC---CccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHhhh
Confidence 3455666677777777763222 1111277888888777889999999999999975433333222 25566777777
Q ss_pred cCCC
Q 047123 506 LDPK 509 (579)
Q Consensus 506 L~~~ 509 (579)
|..+
T Consensus 363 lC~D 366 (441)
T PF12054_consen 363 LCVD 366 (441)
T ss_pred hccC
Confidence 7444
No 290
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=52.84 E-value=1.3e+02 Score=30.81 Aligned_cols=142 Identities=15% Similarity=0.150 Sum_probs=75.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCC-------CHHHHHHHHHHHHHhhc
Q 047123 162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHH-------QSSIREQAVLALSIIVS 234 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~-------~~~~~~~A~~aL~~La~ 234 (579)
.+-..+.+.+-..+...|..|+..|.. ++. -...+|.++.++. .. +.......++.+..|..
T Consensus 178 ~yf~~It~a~~~~~~~~r~~aL~sL~t----D~g------l~~LlPyf~~fI~-~~v~~n~~~nl~~L~~lm~~v~ALl~ 246 (343)
T cd08050 178 LYFEEITEALVGSNEEKRREALQSLRT----DPG------LQQLLPYFVRFIA-EGVTVNLDQNLALLIYLMRMVRALLD 246 (343)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcc----CCC------chhhhhHHHHHHH-HHHHhhhcccHHHHHHHHHHHHHHhc
Confidence 344556666666777777777777633 221 1335777777765 32 34445556667777777
Q ss_pred cChhhHHHHHhcCCHHHHHHHHcc----------CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCC-H-
Q 047123 235 ANDESRKIVFEEGGLGPLLRILET----------GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGT-A- 302 (579)
Q Consensus 235 ~~~~~~~~i~~~g~l~~Lv~lL~~----------~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~-~- 302 (579)
|+...-...-.-.+|+++..+-. ....+|..|+.+|..++..-.....-....++..|.+.+.+.+ +
T Consensus 247 -N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~ 325 (343)
T cd08050 247 -NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPL 325 (343)
T ss_pred -CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCc
Confidence 66543222212257777766622 2357899999999988832111111122233445555554432 2
Q ss_pred HHHHHHHHHHHHh
Q 047123 303 LTQSHAVGAIRNI 315 (579)
Q Consensus 303 ~~~~~a~~aL~nL 315 (579)
....-|+..|..+
T Consensus 326 ~~~YGAi~GL~~l 338 (343)
T cd08050 326 TTHYGAIVGLSAL 338 (343)
T ss_pred chhhHHHHHHHHh
Confidence 2244444444443
No 291
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=52.81 E-value=7.4 Score=23.37 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc
Q 047123 221 IREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILE 257 (579)
Q Consensus 221 ~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~ 257 (579)
+|..|+.+|+.+.. .-++++|++.|+
T Consensus 1 VR~~Aa~aLg~igd-----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD-----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S-----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-----------HHHHHHHHHHhc
Confidence 57788888888877 456777777765
No 292
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=51.21 E-value=48 Score=29.05 Aligned_cols=72 Identities=24% Similarity=0.230 Sum_probs=55.6
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccCCCCHh---HHHHHHHHHHHhhcCC
Q 047123 415 SFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMECPKPVG---LQEAATDAVLSLLTVR 486 (579)
Q Consensus 415 g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~~~~~~---v~~~a~~aL~~L~~~~ 486 (579)
.++..|.+-|.++++.++..|+.+|-.+. ..+..+..+... +..|.+++....... |++.+...+...+...
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 45667777888999999999999999888 446777777666 888888884444444 8999888888877544
No 293
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=51.10 E-value=3.1e+02 Score=28.68 Aligned_cols=260 Identities=10% Similarity=0.091 Sum_probs=131.7
Q ss_pred HHHHHHHccCC-HHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhc----------CCCHHHHHHHHHHHHHhhcC
Q 047123 250 GPLLRILETGS-MPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFR----------SGTALTQSHAVGAIRNIAAV 318 (579)
Q Consensus 250 ~~Lv~lL~~~~-~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~----------~~~~~~~~~a~~aL~nLs~~ 318 (579)
..++.+|..+- ...+.....++.-|+.+...-.-+....-+..|+.+-. ..+..+...+..||+|+..+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 44566666663 44455566666666655444333333333344443322 12346788999999999885
Q ss_pred -hhhHHHHHHcCCHHHHHHHhcCC-----CHHHHHHHHHHHHHHhcCChhhHHHH-HhcCcHHHHHHhhccCCC------
Q 047123 319 -EDIKAALAEEGAVPVLVQSLTSS-----SNLAQENAADCIATLAASGEYFRLLI-IQERGLQRLMHLIQDSTS------ 385 (579)
Q Consensus 319 -~~~~~~l~~~g~v~~Lv~lL~~~-----~~~v~~~a~~~L~~La~~~~~~r~~l-~~~g~i~~Lv~ll~~~~~------ 385 (579)
...+....+......+.+.+... ..++...-+..|.-+..-....|.++ .+.+|++.+.+++++.-.
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n 207 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEIN 207 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcC
Confidence 45566777777777776665321 11344444455555544444556555 458889998888865321
Q ss_pred ----ChHHHHH---HHHHHHHcccch---hH-HHHHhh--cCcHHHHHHHHHhc--CCHH-----------HHHHHHHHH
Q 047123 386 ----SIVTVEN---ALLAISSLSLSD---SA-ARILSS--TTSFIIQLGEFIKR--GNVL-----------LQQVSSSLL 439 (579)
Q Consensus 386 ----~~~~~~~---A~~aL~~L~~~~---~~-~~l~~~--~~g~i~~L~~lL~~--~~~~-----------v~~~A~~aL 439 (579)
+++-... ++.++.|+.... .. ..-... -++.....+..+.. .+.+ +....+.++
T Consensus 208 ~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elhshav~~L~nv~~k~~~~~ 287 (532)
T KOG4464|consen 208 VPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELHSHAVNLLDNVPEKCLDVL 287 (532)
T ss_pred CCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHhhccCCccCCchhhhhhcc
Confidence 1122333 445556666541 11 111111 00112211111111 1111 111122221
Q ss_pred HHhcCChhhHHHHHHH----HHHHHHhccCC--------CCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcC
Q 047123 440 GNLSISDGNKRAVASC----MGSLIKLMECP--------KPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLD 507 (579)
Q Consensus 440 ~~L~~~~~~~~~i~~~----v~~Lv~lL~~~--------~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~ 507 (579)
.-.-..+...+.|... ++.+..+|..+ ...+.......+|..+++.+...+.+.+ ...+|+|.+.-.
T Consensus 288 ~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~R~~Rkylr-~qVLPPLrDV~~ 366 (532)
T KOG4464|consen 288 AGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSHRVMRKYLR-QQVLPPLRDVSQ 366 (532)
T ss_pred cCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhhHHHHHHHH-HhcCCchhhhhc
Confidence 1111111222222222 55555555322 2344556778888999999988888886 558888886655
Q ss_pred CCc
Q 047123 508 PKN 510 (579)
Q Consensus 508 ~~~ 510 (579)
.++
T Consensus 367 RPE 369 (532)
T KOG4464|consen 367 RPE 369 (532)
T ss_pred Ccc
Confidence 444
No 294
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=50.62 E-value=23 Score=25.91 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=33.8
Q ss_pred HHHHhCCCChhHHHHHHHcCchHHHHhhhccC-CchHHHHHHHHh
Q 047123 522 TAAVLGGGSNGCRKRLVAAGAYQHLQKLAETE-VPGAKKVLQRLA 565 (579)
Q Consensus 522 L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~-~~~ak~~~~~l~ 565 (579)
|.-|+.+.. +|..+.+.|+.+.|..+=..+ ++.+...++++.
T Consensus 2 LllL~~T~~--GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV 44 (58)
T PF04064_consen 2 LLLLCATRE--GREYLREKGVYPILRELHKWEEDEEVQEACERLV 44 (58)
T ss_pred HhHHhccHH--HHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHH
Confidence 556777777 999999999999999875554 678888888765
No 295
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=49.89 E-value=6.6e+02 Score=32.09 Aligned_cols=261 Identities=16% Similarity=0.105 Sum_probs=146.2
Q ss_pred cCCHHHHHHHHHHHHHHhccCh---hhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCH
Q 047123 173 IGGVEFKKKALESLLQLLKDDD---KSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGL 249 (579)
Q Consensus 173 ~~~~~~~~~Al~~L~~l~~~~~---~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l 249 (579)
+.+.++...|+.+|+.++..-- +....=.+..++.++..++..+.+.++++..++++.+|-. .....+ ..| =
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~---s~~~nI-kSG-W 1222 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVL---SRVNNV-KSG-W 1222 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH---HHHhhh-hcC-c
Confidence 3467788899999988865221 2111223466788888877746679999999999998876 222333 233 4
Q ss_pred HHHHHHHc----cCCHHHHHHHHHHHHHhcCCC-c-----cHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhc-
Q 047123 250 GPLLRILE----TGSMPLKEKAAIGVEAITTDP-E-----NAWAISAYGGVSVLIEAFRSG-TALTQSHAVGAIRNIAA- 317 (579)
Q Consensus 250 ~~Lv~lL~----~~~~~v~~~aa~~L~~Ls~~~-~-----~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLs~- 317 (579)
..++.++. ...+.+...|-.++..+..+. . ....+ ...|..|.++.+.. +.++--.|+..|++++.
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence 44455544 346667777777776665210 0 01111 23445555555443 35556667777775522
Q ss_pred ---Ch------------------------hh-----HHHHHHcCCHHHHHHH---hcCCCHHHHHHHHHHHHHHhcC-Ch
Q 047123 318 ---VE------------------------DI-----KAALAEEGAVPVLVQS---LTSSSNLAQENAADCIATLAAS-GE 361 (579)
Q Consensus 318 ---~~------------------------~~-----~~~l~~~g~v~~Lv~l---L~~~~~~v~~~a~~~L~~La~~-~~ 361 (579)
.+ +. .........+|.|..+ ..+...+||..|+.+|..+-.. ..
T Consensus 1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 00 00 0000012234444433 3466789999999998876532 11
Q ss_pred hhHHHHHh---cCcHHHHHHhhccC------------------C---CChHHHHHHHHHHHHcccc-----hhHHHHHhh
Q 047123 362 YFRLLIIQ---ERGLQRLMHLIQDS------------------T---SSIVTVENALLAISSLSLS-----DSAARILSS 412 (579)
Q Consensus 362 ~~r~~l~~---~g~i~~Lv~ll~~~------------------~---~~~~~~~~A~~aL~~L~~~-----~~~~~l~~~ 412 (579)
.+.....+ .+++-+++..++.. . .+....+.+..+|.+++.- +....++.
T Consensus 1381 ~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~- 1459 (1780)
T PLN03076 1381 LFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK- 1459 (1780)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 22222222 34455554444321 0 0011345555666666553 44444554
Q ss_pred cCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123 413 TTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS 443 (579)
Q Consensus 413 ~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~ 443 (579)
+++..|...+...+..+-..+..+|.+|.
T Consensus 1460 --~~l~ll~~ci~q~n~~la~ig~~~l~~li 1488 (1780)
T PLN03076 1460 --KVLMLLVSFIKRPHQSLAGIGIAAFVRLM 1488 (1780)
T ss_pred --HHHHHHHHHHcCchHHHHHHHHHHHHHHH
Confidence 47777777777888888888888888887
No 296
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=49.41 E-value=2e+02 Score=29.92 Aligned_cols=131 Identities=15% Similarity=0.072 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHH-hhc-cCCCHHHHHHHHHHHHHhhccChh------------hHHH
Q 047123 177 EFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLIS-LLD-FHHQSSIREQAVLALSIIVSANDE------------SRKI 242 (579)
Q Consensus 177 ~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~-LL~-~~~~~~~~~~A~~aL~~La~~~~~------------~~~~ 242 (579)
..|..|...|..+++.-++....+. .+.+..++. .-. .+.+..-++.|+..++.|+..... +...
T Consensus 226 TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 3456678888888754333322222 123333333 111 134577888899999999872211 1233
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHH
Q 047123 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAI 312 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL 312 (579)
+...-++|-|- -=.+..+-++..|++.+......- .+..+ .++++.++.+|.+++..+...|+.++
T Consensus 305 Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l-~~~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL-PKEQL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC-CHHHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 44444555444 111235678888888887776421 12222 34789999999999999988888764
No 297
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=49.03 E-value=1.7e+02 Score=25.77 Aligned_cols=73 Identities=16% Similarity=0.147 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcc-CCHHHHHHHHHHHHHHhccC-hhhHHHHHhhCcHHH-HHHhhccC--CCHHHHHHHHHHHHHhhc
Q 047123 162 LFIRDIFTRLQI-GGVEFKKKALESLLQLLKDD-DKSAAVVAKEGNVGY-LISLLDFH--HQSSIREQAVLALSIIVS 234 (579)
Q Consensus 162 ~~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~-Lv~LL~~~--~~~~~~~~A~~aL~~La~ 234 (579)
..++.+..+|+. .++.+...|+..|-.+.+.. ......|...+++.. |++++... .+..++...+..+...+.
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 467888899985 58888999988887777644 456677888999997 99998612 346889999998888775
No 298
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=48.01 E-value=4e+02 Score=29.01 Aligned_cols=174 Identities=14% Similarity=0.073 Sum_probs=98.4
Q ss_pred CCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhc-----------CCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 047123 299 SGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLT-----------SSSNLAQENAADCIATLAASGEYFRLLI 367 (579)
Q Consensus 299 ~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~-----------~~~~~v~~~a~~~L~~La~~~~~~r~~l 367 (579)
+.+..+...|-..|..+...-+ +...|..|+.+.. ..++.+|.+.+..|..=... .-
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~e------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A------a~ 315 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSLE------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA------AT 315 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCCC------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH------Hh
Confidence 3455677778788877766422 2335566666654 23567888777776652110 00
Q ss_pred HhcCcHHHHHHhhccCCCChHHHHHHHHHH---HHcccc--hhHHHHHhhcCcHHHHHHHHHh--------cCCHHHHHH
Q 047123 368 IQERGLQRLMHLIQDSTSSIVTVENALLAI---SSLSLS--DSAARILSSTTSFIIQLGEFIK--------RGNVLLQQV 434 (579)
Q Consensus 368 ~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL---~~L~~~--~~~~~l~~~~~g~i~~L~~lL~--------~~~~~v~~~ 434 (579)
.-...+.....-+.+.....+++..+...+ ...... ...-..+.. .....+...++ +.+...+..
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~--~i~~~g~p~~~~~~~~~~~~~~~~lR~~ 393 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRP--VILSQGWPLIQDSSSQSNSSEDIELRSL 393 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHH--HHHhcCccccccccccCCCcccHHHHHH
Confidence 112233333333444422236677776666 433333 111111111 23333444442 346678889
Q ss_pred HHHHHHHhc-CChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCc
Q 047123 435 SSSLLGNLS-ISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRS 487 (579)
Q Consensus 435 A~~aL~~L~-~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~ 487 (579)
+-.+|+.|+ ..+..-..=..-+..|.+-| +.+..+++...-+||.+|+....
T Consensus 394 aYe~lG~L~~~~p~l~~~d~~li~~LF~sL-~~~~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 394 AYETLGLLAKRAPSLFSKDLSLIEFLFDSL-EDESPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred HHHHHHHHHccCcccccccHHHHHHHHHHh-hCcchHHHHHHHHHHHHHHHHHh
Confidence 999999999 55543211111277888878 77789999999999999987543
No 299
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=47.54 E-value=17 Score=35.15 Aligned_cols=77 Identities=23% Similarity=0.275 Sum_probs=57.6
Q ss_pred cccccchhhhhhHHHHHHHhhhhccccccCCCCCCCChhHHhHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchhHh
Q 047123 41 SLTVRSFVGRWQILRTKLVSLQSSLSSISDSPHWSENPLLHTLLPSLLSTLQRLKALSDQCTLSSFTGGKLLMQSDLDIA 120 (579)
Q Consensus 41 ~~~~~~f~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~l~~~c~~~~~~~g~l~~~s~~d~~ 120 (579)
+..|+.+.++++.++.||+.+... ...|.-..+.+-..++.-+.++|=++.+=+++|... |+-.|+-|+..+
T Consensus 91 s~YVd~l~~~~~~f~~rL~~i~~~----~~i~~~~~~~lw~~~i~~~~~~Lveg~s~vkKCs~e----GRalM~lD~q~~ 162 (234)
T PF10474_consen 91 SSYVDQLVQEFQQFSERLDEISKQ----GPIPPEVQNVLWDRLIFFAFETLVEGYSRVKKCSNE----GRALMQLDFQQL 162 (234)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCChh----hHHHHHHHHHHH
Confidence 455677888888888888877621 223322445565667777888888888889999998 999999999988
Q ss_pred hhhhh
Q 047123 121 NTSLS 125 (579)
Q Consensus 121 ~~~l~ 125 (579)
...++
T Consensus 163 ~~~le 167 (234)
T PF10474_consen 163 QNKLE 167 (234)
T ss_pred HHHHH
Confidence 88775
No 300
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=47.35 E-value=1.3e+02 Score=25.67 Aligned_cols=75 Identities=15% Similarity=0.176 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccCh-hhHHHHHh-hCcHHHHHHhhccCC--------CHHHHHHHHHH
Q 047123 159 DLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDD-KSAAVVAK-EGNVGYLISLLDFHH--------QSSIREQAVLA 228 (579)
Q Consensus 159 ~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~-~g~v~~Lv~LL~~~~--------~~~~~~~A~~a 228 (579)
.......-|..+|+..++-++.+++..|..++.... ..+..+.. ...|..+.++-. .+ ...||..|-.+
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g-~~Dp~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKG-PPDPLKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCC-CCCcccCcchhHHHHHHHHHH
Confidence 344567789999999999999999999999987554 44555543 334444444432 12 24677777777
Q ss_pred HHHhhc
Q 047123 229 LSIIVS 234 (579)
Q Consensus 229 L~~La~ 234 (579)
+..|-.
T Consensus 114 ~~~if~ 119 (122)
T cd03572 114 IKAIFS 119 (122)
T ss_pred HHHHhc
Confidence 766544
No 301
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.83 E-value=67 Score=34.36 Aligned_cols=71 Identities=17% Similarity=0.113 Sum_probs=56.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhh-HHHHHhhCcHHHHHHhhccC-CCHHHHHHHHHHHHHh
Q 047123 162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKS-AAVVAKEGNVGYLISLLDFH-HQSSIREQAVLALSII 232 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~-~~~i~~~g~v~~Lv~LL~~~-~~~~~~~~A~~aL~~L 232 (579)
..|+.+..++++.++.++..|+..|-.+.+...+. ...|++.++++.+|.+.+.. .+..+|+.++..|-.=
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHH
Confidence 36899999999999999999999666565544444 44788999999999998845 5789999998877643
No 302
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=45.72 E-value=3.9e+02 Score=28.20 Aligned_cols=231 Identities=9% Similarity=0.069 Sum_probs=118.3
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcC--h
Q 047123 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRS-GTALTQSHAVGAIRNIAAV--E 319 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLs~~--~ 319 (579)
.+....+..|+.++++.++.-|.....+|.++-..-.....+........+.+.+.. .+.......+..+..+-.. .
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~ 208 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAV 208 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--S
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCC
Confidence 444556788999999999998998888888876432333333333344455555443 2333344455555544331 1
Q ss_pred hh---HHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHH
Q 047123 320 DI---KAALAEEGAVPVLVQSLTSSS-NLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALL 395 (579)
Q Consensus 320 ~~---~~~l~~~g~v~~Lv~lL~~~~-~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~ 395 (579)
.. ...+.. ..++.+..... ......-..|+......++..-. -.+..+++.+-..++ .-+..-+.
T Consensus 209 plk~eh~~fl~----~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~-----~~i~~llk~WP~t~s--~Kev~FL~ 277 (409)
T PF01603_consen 209 PLKEEHKQFLR----KVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAE-----PVIKGLLKHWPKTNS--QKEVLFLN 277 (409)
T ss_dssp S--HHHHHHHH----HTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHH-----HHHHHHHHHS-SS-H--HHHHHHHH
T ss_pred CCcHHHHHHHH----HHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHH-----HHHHHHHHhCCCCCc--hhHHHHHH
Confidence 11 111211 22333443332 12233444455544444443221 234455555544332 22333344
Q ss_pred HHHHcccc---hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CChhhHHHHHHH-HHHHHHhccCCCC
Q 047123 396 AISSLSLS---DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS---ISDGNKRAVASC-MGSLIKLMECPKP 468 (579)
Q Consensus 396 aL~~L~~~---~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~---~~~~~~~~i~~~-v~~Lv~lL~~~~~ 468 (579)
-+..+... .....+.. -....+...+.+.+..|-+.|.....|=. .-.++.+.+... .+.|.+..+...+
T Consensus 278 el~~il~~~~~~~f~~i~~---~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn 354 (409)
T PF01603_consen 278 ELEEILEVLPPEEFQKIMV---PLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWN 354 (409)
T ss_dssp HHHHHHTT--HHHHHHHHH---HHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SS
T ss_pred HHHHHHHhcCHHHHHHHHH---HHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhh
Confidence 45555443 22333333 36777888889999999887765433221 011233333333 4555554545668
Q ss_pred HhHHHHHHHHHHHhhcCCc
Q 047123 469 VGLQEAATDAVLSLLTVRS 487 (579)
Q Consensus 469 ~~v~~~a~~aL~~L~~~~~ 487 (579)
..++..+..++..|...++
T Consensus 355 ~~Vr~~a~~vl~~l~~~d~ 373 (409)
T PF01603_consen 355 QTVRNLAQNVLKILMEMDP 373 (409)
T ss_dssp TTHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHHHHhCH
Confidence 9999999999999886543
No 303
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.22 E-value=3.5e+02 Score=32.98 Aligned_cols=108 Identities=13% Similarity=0.061 Sum_probs=48.7
Q ss_pred CCHHHHHHHHccC--CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhc----CC---CHHHHHHHHHHHHHhhc
Q 047123 247 GGLGPLLRILETG--SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFR----SG---TALTQSHAVGAIRNIAA 317 (579)
Q Consensus 247 g~l~~Lv~lL~~~--~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~----~~---~~~~~~~a~~aL~nLs~ 317 (579)
|.+-+...+.... ..+++.....+|.++-..+.. ..-+| -+.++++++ .+ ...+...+..+|+-++.
T Consensus 840 ~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge---~ll~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIss 915 (1610)
T KOG1848|consen 840 GMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGE---HLLHG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISS 915 (1610)
T ss_pred HHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccch---hhccc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhh
Confidence 4444444444332 345566666666666532211 11112 233333332 22 23455556666665554
Q ss_pred C-hhhHHHHHHcCCHHHHHHHhcC-CCHHHHHHHHHHHHHHhc
Q 047123 318 V-EDIKAALAEEGAVPVLVQSLTS-SSNLAQENAADCIATLAA 358 (579)
Q Consensus 318 ~-~~~~~~l~~~g~v~~Lv~lL~~-~~~~v~~~a~~~L~~La~ 358 (579)
+ =..-..-+=.+.|+.+..+-.. .+..+--.|++.++++..
T Consensus 916 DfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsD 958 (1610)
T KOG1848|consen 916 DFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSD 958 (1610)
T ss_pred cchhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 2 0000011122455666555533 344566667777777653
No 304
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=43.47 E-value=29 Score=28.90 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHH
Q 047123 305 QSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQ 346 (579)
Q Consensus 305 ~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~ 346 (579)
....+..+..|+..|+.-..+++.|+++.|+.+|.+.+.++.
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 345667778889999988899999999999999988877654
No 305
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=42.94 E-value=29 Score=21.05 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcc
Q 047123 220 SIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILET 258 (579)
Q Consensus 220 ~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~ 258 (579)
.+|..|+.+|+++.. ..+++.|++.|++
T Consensus 2 ~vR~~aa~aLg~~~~-----------~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD-----------EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC-----------HhHHHHHHHHhcC
Confidence 468889999999866 3456667666654
No 306
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.78 E-value=5.4e+02 Score=29.05 Aligned_cols=143 Identities=17% Similarity=0.190 Sum_probs=92.6
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHhhcc-Ch----hhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccH
Q 047123 207 GYLISLLDFHHQSSIREQAVLALSIIVSA-ND----ESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENA 281 (579)
Q Consensus 207 ~~Lv~LL~~~~~~~~~~~A~~aL~~La~~-~~----~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~ 281 (579)
|.|-+-|+ ..+..+|.+|+..+.++--- +| +....+++.. ..-+..+|+++-+.+|..|..-+++... --
T Consensus 177 p~l~R~L~-a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~~s---~f 251 (1005)
T KOG1949|consen 177 PILWRGLK-ARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKITS---KF 251 (1005)
T ss_pred HHHHHhhc-cCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHH---HH
Confidence 33445566 77899999999988876421 22 2334444433 6778899999999999998888877663 12
Q ss_pred HHHHhcCcHHHHHHH----hcC-CCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 047123 282 WAISAYGGVSVLIEA----FRS-GTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATL 356 (579)
Q Consensus 282 ~~i~~~g~i~~Lv~l----l~~-~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L 356 (579)
|.+.-...+..|+.- +.. ...+++......|..+..++.....+-. ++|.+=..|.+.++.|+..+...|..+
T Consensus 252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~--~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQ--LLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHH--HHHhcchhhhccchhHHHHHHHHHHHH
Confidence 334333444444432 222 3347788888888888777665443322 445555567788888998888887766
No 307
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=42.40 E-value=2.8e+02 Score=25.61 Aligned_cols=73 Identities=14% Similarity=0.116 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc
Q 047123 161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVS 234 (579)
Q Consensus 161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~ 234 (579)
.-+++-++.=|+..+...+.-|...+.++.......+-.-+-...|.+|.+-|. +.++++...++.+|..|..
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~-tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALN-TRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHH
Confidence 346777777777777677777877777776652223333335667888888898 9999999999999999965
No 308
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=40.62 E-value=6e+02 Score=28.93 Aligned_cols=122 Identities=16% Similarity=0.090 Sum_probs=77.1
Q ss_pred HHHHHHHHHHh-cc-------CCHHHHHHHHHHHHHHhc--cChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHH
Q 047123 161 VLFIRDIFTRL-QI-------GGVEFKKKALESLLQLLK--DDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALS 230 (579)
Q Consensus 161 ~~~v~~Lv~~L-~~-------~~~~~~~~Al~~L~~l~~--~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~ 230 (579)
...++-++..| ++ .++.....|++.+.++.+ ..+....-+.+.-.++.++-.++ ++.--.+..|+..+.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~-s~ygfL~Srace~is 485 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFR-SNYGFLKSRACEFIS 485 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhc-CcccchHHHHHHHHH
Confidence 34456666666 21 244455666777766654 44455555566666777777777 888888899999999
Q ss_pred HhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 047123 231 IIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISA 286 (579)
Q Consensus 231 ~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~ 286 (579)
.+.. +.+..-+-..+.......+++.+-.++..|+-++.-+-.+.+....+.+
T Consensus 486 ~~ee---Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sa 538 (970)
T COG5656 486 TIEE---DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSA 538 (970)
T ss_pred HHHH---hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHh
Confidence 8865 2222222233455556666667777888888888877765555444444
No 309
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=38.59 E-value=84 Score=33.54 Aligned_cols=60 Identities=27% Similarity=0.192 Sum_probs=48.5
Q ss_pred HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhh
Q 047123 456 MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNK 515 (579)
Q Consensus 456 v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k 515 (579)
+..+.+.+.-.++++++..+..++++++-+.++|+..+.+..--..+++++..+.+++.+
T Consensus 329 ~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~ 388 (763)
T KOG4231|consen 329 MLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNK 388 (763)
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccch
Confidence 555555554677899999999999999999999998887777778889999888877433
No 310
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=38.31 E-value=85 Score=26.49 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=33.7
Q ss_pred cHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhc
Q 047123 205 NVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEE 246 (579)
Q Consensus 205 ~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~ 246 (579)
+|+.|++-|. ++++++...|..+|...+. ++++.+.++..
T Consensus 9 ~i~lLv~QL~-D~~~~V~~~A~~iL~e~c~-~~~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLY-DPSPEVVAAALEILEEACE-DKEYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHh-chhhHHHHHHc
Confidence 5888999998 9999999999999999999 66776666543
No 311
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.71 E-value=6.4e+02 Score=28.38 Aligned_cols=265 Identities=12% Similarity=0.051 Sum_probs=140.8
Q ss_pred HHHHHHHHhc-cCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123 163 FIRDIFTRLQ-IGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK 241 (579)
Q Consensus 163 ~v~~Lv~~L~-~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~ 241 (579)
.+..+.+.|- +.|+..|.+|=.+|+++.. +|++.. .-.-+++....+-.+.-|..+|..+..... .-.
T Consensus 6 qLe~lCk~LY~s~D~~~R~~AE~~L~e~s~-specls---------kCqlll~~gs~pYs~mlAst~L~Klvs~~t-~lp 74 (1082)
T KOG1410|consen 6 QLESLCKDLYESTDPTARHRAEKALAELSE-SPECLS---------KCQLLLERGSYPYSQMLASTCLMKLVSRKT-PLP 74 (1082)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHcc-CHHHHH---------HHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CCc
Confidence 3556666664 5688899999999999864 555432 222344424457777888888887766222 111
Q ss_pred HHHhcCCHHHHHHHHccCC----HHHHHHHHHHHHHhc---CCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Q 047123 242 IVFEEGGLGPLLRILETGS----MPLKEKAAIGVEAIT---TDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRN 314 (579)
Q Consensus 242 ~i~~~g~l~~Lv~lL~~~~----~~v~~~aa~~L~~Ls---~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~n 314 (579)
....-..-.-++..|.++. +-+...-+..++.|+ +.+.++....-.+.|..+.+.++.++.+--..++..|..
T Consensus 75 l~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsq 154 (1082)
T KOG1410|consen 75 LEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQ 154 (1082)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHH
Confidence 1111122334566666653 344555556666666 444556666667788888898888876655556666655
Q ss_pred hhc--------ChhhH-----HHHHHcCCHHH---HHHHhcCC-----CH----HHHHHHHHHHHHHhc-------CC--
Q 047123 315 IAA--------VEDIK-----AALAEEGAVPV---LVQSLTSS-----SN----LAQENAADCIATLAA-------SG-- 360 (579)
Q Consensus 315 Ls~--------~~~~~-----~~l~~~g~v~~---Lv~lL~~~-----~~----~v~~~a~~~L~~La~-------~~-- 360 (579)
|.. .+.++ ..+.+....+. -..+|+.. +. .++..++..-.++.. .|
T Consensus 155 LvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEs 234 (1082)
T KOG1410|consen 155 LVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDES 234 (1082)
T ss_pred HHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccccccc
Confidence 532 11111 11222222222 22333221 11 233333332222211 11
Q ss_pred ----------hhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-------hhHHHHHhhcCcHHHHHHHH
Q 047123 361 ----------EYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-------DSAARILSSTTSFIIQLGEF 423 (579)
Q Consensus 361 ----------~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-------~~~~~l~~~~~g~i~~L~~l 423 (579)
..-|..+.+...++....+..+-.+ ...+.|..+|..+++- ..+...+.. .+.-...+
T Consensus 235 sed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~--~~S~~alsclvqlASvRRsLFN~aeRa~yl~~---Lv~Gvk~i 309 (1082)
T KOG1410|consen 235 SEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPP--ELSELALSCLVQLASVRRSLFNGAERAKYLQH---LVEGVKRI 309 (1082)
T ss_pred cccccceecCcHHHHHhcCchHHHHHHHHhccCCc--hhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHH---HHHHHHHH
Confidence 1123444555566777777666555 7888899999888863 344444443 44445555
Q ss_pred HhcC----CHHHHHHHHHHHHHhc
Q 047123 424 IKRG----NVLLQQVSSSLLGNLS 443 (579)
Q Consensus 424 L~~~----~~~v~~~A~~aL~~L~ 443 (579)
++++ ++.--..-++.|.++-
T Consensus 310 l~np~~LsD~~nyHeFCRllaRlk 333 (1082)
T KOG1410|consen 310 LENPQGLSDPANYHEFCRLLARLK 333 (1082)
T ss_pred HhCCcCCCCcchHHHHHHHHHHHH
Confidence 5543 3333334444454443
No 312
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=36.88 E-value=4.1e+02 Score=25.91 Aligned_cols=79 Identities=15% Similarity=0.179 Sum_probs=51.1
Q ss_pred cCCHHHHHHHHccCCHH--------HHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCC--HHHHHHHHHHHHHh
Q 047123 246 EGGLGPLLRILETGSMP--------LKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGT--ALTQSHAVGAIRNI 315 (579)
Q Consensus 246 ~g~l~~Lv~lL~~~~~~--------v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~--~~~~~~a~~aL~nL 315 (579)
..++++++++++.++.. +-+...++|..++ .|-+..|..++.+++ .-++..++.+|..+
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~-----------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l 140 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG-----------DGDIEPLKELIEDPDADEYVRMAAISALAFL 140 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh-----------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 57899999999765432 2222223333333 466788888888764 46889999999988
Q ss_pred hc-ChhhHHHHHHcCCHHHHHHH
Q 047123 316 AA-VEDIKAALAEEGAVPVLVQS 337 (579)
Q Consensus 316 s~-~~~~~~~l~~~g~v~~Lv~l 337 (579)
+. ++..|+.+++ .+..++..
T Consensus 141 ~~~~~~~Re~vi~--~f~~ll~~ 161 (249)
T PF06685_consen 141 VHEGPISREEVIQ--YFRELLNY 161 (249)
T ss_pred HHcCCCCHHHHHH--HHHHHHHH
Confidence 77 4555777665 34444444
No 313
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=36.82 E-value=3.4e+02 Score=24.98 Aligned_cols=69 Identities=17% Similarity=0.089 Sum_probs=52.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh
Q 047123 289 GVSVLIEAFRSGTALTQSHAVGAIRNIAAV-EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEY 362 (579)
Q Consensus 289 ~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~-~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~ 362 (579)
-++.+++++-+.+..++..|+..+.-+... =-+. .-++|.++.+..++++.++..|...+..+....+.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 356778888889999999999888765431 0000 01678899999999999999999999999875544
No 314
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=36.71 E-value=3.6e+02 Score=27.70 Aligned_cols=124 Identities=15% Similarity=0.171 Sum_probs=68.4
Q ss_pred HHHHhcCCCccHHHHHhcCcHHHHHHHhcCC-------CHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcC--
Q 047123 270 GVEAITTDPENAWAISAYGGVSVLIEAFRSG-------TALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTS-- 340 (579)
Q Consensus 270 ~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~-------~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~-- 340 (579)
+|..|..++.... .+|.++.++..+ +..........+..|..++...-...-+-.+|.++.++-.
T Consensus 198 aL~sL~tD~gl~~------LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~ 271 (343)
T cd08050 198 ALQSLRTDPGLQQ------LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQ 271 (343)
T ss_pred HHHHhccCCCchh------hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHh
Confidence 4555655544332 346666665532 4455666667777777787776655555588888877621
Q ss_pred --------CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHc
Q 047123 341 --------SSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSL 400 (579)
Q Consensus 341 --------~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L 400 (579)
.+-.+|+.|+.+|..++......-. -........+.+.+.+........--|+..|..|
T Consensus 272 l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 272 LCSRPPDDNHWALRDYAARLLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred hcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 1237999999999999853221100 0122334455555544432123344444444443
No 315
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=36.46 E-value=2.7e+02 Score=23.80 Aligned_cols=102 Identities=12% Similarity=0.179 Sum_probs=58.4
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CC-------hhhHHHHHHH--------HHHHHHhccCCCC---HhHHH
Q 047123 415 SFIIQLGEFIKRGNVLLQQVSSSLLGNLS---IS-------DGNKRAVASC--------MGSLIKLMECPKP---VGLQE 473 (579)
Q Consensus 415 g~i~~L~~lL~~~~~~v~~~A~~aL~~L~---~~-------~~~~~~i~~~--------v~~Lv~lL~~~~~---~~v~~ 473 (579)
.+++.++.++++ ++.........|..+. .+ .+-++.+.+. ++.+.+.+....+ .++..
T Consensus 26 ~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~ 104 (148)
T PF08389_consen 26 DFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELVK 104 (148)
T ss_dssp THHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHH
T ss_pred hHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 466666666665 3444455555555554 11 1222233333 4455555532222 77888
Q ss_pred HHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHH
Q 047123 474 AATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVT 522 (579)
Q Consensus 474 ~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L 522 (579)
.+..++.+... .-....+. +..-+..+.++|..++ .+..|+.||
T Consensus 105 ~~L~~l~s~i~-~~~~~~i~-~~~~l~~~~~~l~~~~---~~~~A~~cl 148 (148)
T PF08389_consen 105 AALKCLKSWIS-WIPIELII-NSNLLNLIFQLLQSPE---LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHTT-TS-HHHHH-SSSHHHHHHHHTTSCC---CHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCHHHhc-cHHHHHHHHHHcCCHH---HHHHHHHhC
Confidence 89999988877 33344444 3567888999996554 566776654
No 316
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=35.91 E-value=50 Score=27.49 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHH
Q 047123 223 EQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLK 264 (579)
Q Consensus 223 ~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~ 264 (579)
...++.+..|+. .|+.-..+++.|+++.|+.+|.+.+.++.
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 456778889999 99999999999999999999998877654
No 317
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=35.62 E-value=2.1e+02 Score=24.55 Aligned_cols=104 Identities=16% Similarity=0.101 Sum_probs=63.0
Q ss_pred CcHHHHHHhhccCCCHHHHHHHHHHHHHhhccCh--------hhHHH-----HHhc--CCHHHHHHHHccCC----HHHH
Q 047123 204 GNVGYLISLLDFHHQSSIREQAVLALSIIVSAND--------ESRKI-----VFEE--GGLGPLLRILETGS----MPLK 264 (579)
Q Consensus 204 g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~--------~~~~~-----i~~~--g~l~~Lv~lL~~~~----~~v~ 264 (579)
++++.+++++. + ++...+..+.+|..+...-. ..|.. +.+. .++..+.+++.... .+..
T Consensus 26 ~~l~~l~~~~~-~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~ 103 (148)
T PF08389_consen 26 DFLEDLLQLLQ-S-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELV 103 (148)
T ss_dssp THHHHHHHHHH-T-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHH
T ss_pred hHHHHHHHHhc-c-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 46777777776 4 45556666666666654211 11111 2222 34445555555543 7788
Q ss_pred HHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHH
Q 047123 265 EKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAI 312 (579)
Q Consensus 265 ~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL 312 (579)
..+..++..... --....+.+.+.++.+++++.+++ .+..|+.+|
T Consensus 104 ~~~L~~l~s~i~-~~~~~~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 104 KAALKCLKSWIS-WIPIELIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHTT-TS-HHHHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCCHHHhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 888888888776 334456666789999999995544 477777765
No 318
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=34.85 E-value=41 Score=35.70 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 047123 387 IVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSIS 445 (579)
Q Consensus 387 ~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~ 445 (579)
+++++.|..++.+++.+ .++...+.. +..-..+++++-...+++-+.++.|+..+..+
T Consensus 342 ~~l~~qa~~~v~~~~~~~~~r~~~~ts-p~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~~ 400 (763)
T KOG4231|consen 342 PELQRQALLAVGNLAFCLENRRILITS-PSLRELLMRLIVTPEPRVNKAAARALAILGEN 400 (763)
T ss_pred hHHHHHHHHHHHHheecccccccccCC-hHHHHHHHHHhcccccccchhhhHHHHHhhhh
Confidence 48999999999999998 665544433 24455677777777788888888887777643
No 319
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=34.58 E-value=1.6e+02 Score=26.11 Aligned_cols=47 Identities=26% Similarity=0.270 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCc
Q 047123 432 QQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRS 487 (579)
Q Consensus 432 ~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~ 487 (579)
+..|...|..+-..-. |..|+.+| .+++..+...|+.+|.+-....+
T Consensus 80 ~~~Av~LLGtM~GGYN--------V~~LI~~L-~~~d~~lA~~Aa~aLk~TlLvyD 126 (154)
T PF11791_consen 80 PAEAVELLGTMLGGYN--------VQPLIDLL-KSDDEELAEEAAEALKNTLLVYD 126 (154)
T ss_dssp HHHHHHHHTTS-SSTT--------HHHHHHGG---G-TTTHHHHHHHHHT--TTCC
T ss_pred HHHHHHHHhhccCCCc--------HHHHHHHH-cCCcHHHHHHHHHHHHhhHHHHh
Confidence 3445555555542222 88999999 77788889999999988765543
No 320
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.78 E-value=9e+02 Score=28.95 Aligned_cols=128 Identities=16% Similarity=0.120 Sum_probs=82.7
Q ss_pred CcHHHHHH-hhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC---CCc
Q 047123 204 GNVGYLIS-LLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT---DPE 279 (579)
Q Consensus 204 g~v~~Lv~-LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~---~~~ 279 (579)
.++..|-. +|+ +.+.+.+...+..+..+-..++++-...-+.--+|.++.-+......+|.....+|..-.. .-+
T Consensus 466 eAvqmLqdiFLk-aenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvP 544 (2799)
T KOG1788|consen 466 EAVQMLQDIFLK-AENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVP 544 (2799)
T ss_pred HHHHHHHHHHHH-hcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCc
Confidence 34555555 567 7888888888888887776688988888888889999999988877788777766654331 112
Q ss_pred cHHHHHhcCcHHHHHHHhcCCCH-HHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhc
Q 047123 280 NAWAISAYGGVSVLIEAFRSGTA-LTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLT 339 (579)
Q Consensus 280 ~~~~i~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~ 339 (579)
+++.+ .|+-+|+.+-. .+....+.....|-. +...++.+.+-|+++.|...++
T Consensus 545 eqELl-------SLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlk 599 (2799)
T KOG1788|consen 545 EQELL-------SLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLK 599 (2799)
T ss_pred HHHHH-------HHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 22222 24445555432 222222333334433 5556788889999888876664
No 321
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=33.46 E-value=2.2e+02 Score=29.01 Aligned_cols=58 Identities=21% Similarity=0.282 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhhccChhhHHHHHhcC--CHHHHHHHHccC---CHHHHHHHHHHHHHhcCCC
Q 047123 220 SIREQAVLALSIIVSANDESRKIVFEEG--GLGPLLRILETG---SMPLKEKAAIGVEAITTDP 278 (579)
Q Consensus 220 ~~~~~A~~aL~~La~~~~~~~~~i~~~g--~l~~Lv~lL~~~---~~~v~~~aa~~L~~Ls~~~ 278 (579)
.+|..|+.++..+.. ++.....++..+ .+..|++++.-+ +..++..|..+|..++.+.
T Consensus 237 ~iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~ 299 (329)
T PF06012_consen 237 QIRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKR 299 (329)
T ss_pred HHHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 445566666666666 777777887776 899999999875 6889999999999999643
No 322
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=33.21 E-value=6e+02 Score=26.73 Aligned_cols=132 Identities=11% Similarity=0.069 Sum_probs=81.5
Q ss_pred HHHHHhhccCCC-HHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcc----------CCHHHHHHHHHHHHHhc
Q 047123 207 GYLISLLDFHHQ-SSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILET----------GSMPLKEKAAIGVEAIT 275 (579)
Q Consensus 207 ~~Lv~LL~~~~~-~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~----------~~~~v~~~aa~~L~~Ls 275 (579)
..+++.|. .+. ...+...+..+..|+. +..+-.-+....-+..|+.+-+- .++.+...+..+|+|+.
T Consensus 48 e~i~~Vle-~~~p~t~~v~~LetvrILSR-dk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv 125 (532)
T KOG4464|consen 48 ERIFEVLE-NGEPLTHRVVCLETVRILSR-DKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV 125 (532)
T ss_pred HHHHHHHh-cCCCchhhhhHHHHHHHHhc-cccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Confidence 44555555 444 4455566777777777 44443333322233344433321 25678889999999999
Q ss_pred C-CCccHHHHHhcCcHHHHHHHhcCC-----CHHHHHHHHHHHHHhhc-ChhhHHHH-HHcCCHHHHHHHhcC
Q 047123 276 T-DPENAWAISAYGGVSVLIEAFRSG-----TALTQSHAVGAIRNIAA-VEDIKAAL-AEEGAVPVLVQSLTS 340 (579)
Q Consensus 276 ~-~~~~~~~i~~~g~i~~Lv~ll~~~-----~~~~~~~a~~aL~nLs~-~~~~~~~l-~~~g~v~~Lv~lL~~ 340 (579)
. ++..+..+.+......+++.+... ...++..-.+.|.-++. ..+.|.++ ++.++++.+.+.+.+
T Consensus 126 f~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 126 FHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred hccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence 5 557778888877777777655421 22345556666666654 45666654 488999999998853
No 323
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=33.08 E-value=4e+02 Score=28.77 Aligned_cols=114 Identities=14% Similarity=0.135 Sum_probs=66.7
Q ss_pred hHHHHH-hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccCh----hhHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHH
Q 047123 196 SAAVVA-KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAND----ESRKIVFEEGGLGPLLRILET-GSMPLKEKAAI 269 (579)
Q Consensus 196 ~~~~i~-~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~----~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~aa~ 269 (579)
....+. ..++|..+++.++ .+.+.+--++.+. .+.+ +..+++.+.+.|+.|+..|.. .+.+++.+|+.
T Consensus 12 ~l~Fik~~~~~v~~llkHI~---~~~ImDlLLklIs---~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~ 85 (475)
T PF04499_consen 12 MLEFIKSQPNFVDNLLKHID---TPAIMDLLLKLIS---TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAAD 85 (475)
T ss_pred HHHHHHhCccHHHHHHHhcC---CcHHHHHHHHHHc---cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHH
Confidence 333433 3566666666655 2333333333333 2122 345666778999999999974 47889999999
Q ss_pred HHHHhcC---C-----------CccHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHh
Q 047123 270 GVEAITT---D-----------PENAWAISAYGGVSVLIEAFRS-GTALTQSHAVGAIRNI 315 (579)
Q Consensus 270 ~L~~Ls~---~-----------~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nL 315 (579)
.|..+.. + .+....+.....|..|+..+-. .......+++.++..|
T Consensus 86 ~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieL 146 (475)
T PF04499_consen 86 FLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIEL 146 (475)
T ss_pred HHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 9888752 1 1223445556677777775442 2234455666555444
No 324
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=33.01 E-value=1.5e+02 Score=31.93 Aligned_cols=112 Identities=17% Similarity=0.255 Sum_probs=62.4
Q ss_pred HhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHH----HHH--HHHHHHhccCCCCHhHHHHHHHHHHHhh
Q 047123 410 LSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAV----ASC--MGSLIKLMECPKPVGLQEAATDAVLSLL 483 (579)
Q Consensus 410 ~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i----~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~ 483 (579)
+...++++..+++.+... .+-.--.+++. +..++.+..+ .+. |+.|+.+|....+.+++.+|+..|..+.
T Consensus 16 ik~~~~~v~~llkHI~~~--~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII 91 (475)
T PF04499_consen 16 IKSQPNFVDNLLKHIDTP--AIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAII 91 (475)
T ss_pred HHhCccHHHHHHHhcCCc--HHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 334457777777776433 22222222222 1223334333 334 9999999966678899999999999986
Q ss_pred cCCcch--------------hHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHh
Q 047123 484 TVRSNR--------------KELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVL 526 (579)
Q Consensus 484 ~~~~~~--------------~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~ 526 (579)
+.+.+. +.+. ....|..|++.+-.......-...++++..|-
T Consensus 92 ~is~n~~~~~~~~igpn~L~r~L~-S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 92 RISRNAPQNEQSSIGPNPLTRQLV-SEETVEKLLDIMLNSQGGSSLVNGVSILIELI 147 (475)
T ss_pred HHhhccccccccCCCccHHHHHHh-ChHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 543321 2223 34556666655543211324555666666555
No 325
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=32.64 E-value=4.5e+02 Score=30.52 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=44.0
Q ss_pred HHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhcCC-----C--ccHHHHHhcCcHHHHHHHhcC
Q 047123 240 RKIVFEEGGLGPLLRILETG-SMPLKEKAAIGVEAITTD-----P--ENAWAISAYGGVSVLIEAFRS 299 (579)
Q Consensus 240 ~~~i~~~g~l~~Lv~lL~~~-~~~v~~~aa~~L~~Ls~~-----~--~~~~~i~~~g~i~~Lv~ll~~ 299 (579)
.+++-+...++.++.++... +++++.+|...|+.+... . .....+.....+..|+..+-.
T Consensus 183 iq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~ 250 (838)
T KOG2073|consen 183 IQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLE 250 (838)
T ss_pred HHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHcc
Confidence 34555677899999999764 688999999999988854 1 346667777788888875433
No 326
>PLN03205 ATR interacting protein; Provisional
Probab=32.53 E-value=2.3e+02 Score=29.46 Aligned_cols=113 Identities=10% Similarity=0.100 Sum_probs=69.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhc---ChhhHHHHH-HcCCHHHHHHHh-----cCCCHHHHHHHHHHHHHHhcC
Q 047123 289 GVSVLIEAFRSGTALTQSHAVGAIRNIAA---VEDIKAALA-EEGAVPVLVQSL-----TSSSNLAQENAADCIATLAAS 359 (579)
Q Consensus 289 ~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~---~~~~~~~l~-~~g~v~~Lv~lL-----~~~~~~v~~~a~~~L~~La~~ 359 (579)
.+++|+.+|..++..+...+++.|..+-. +++.|.... +.+.+ .|+.++ ....+.++..|+..+.-+...
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWv-sLfElm~QiAv~~TEE~VrLEAvSIMnVIlms 402 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWH-SLFELMNQIASIRTEEDVKLEALSIMNIIVMS 402 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHH-HHHHHHHHHHhccchhheeeehhhhhHHhhhc
Confidence 35788899999988888888887755533 122221111 22222 233333 234556777787776665532
Q ss_pred -Ch-hhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc
Q 047123 360 -GE-YFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS 403 (579)
Q Consensus 360 -~~-~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~ 403 (579)
++ ..|+.+...-+.+.+-++|+.... -.++..+...|.-|-.+
T Consensus 403 sna~~eREkFG~~~VfESiaQLLkkEaG-l~VqKealhLLfLLLNC 447 (652)
T PLN03205 403 TDAYTARESFVSKEVFESISLLLRKEGG-LHVRKEAIHLFYLLLNC 447 (652)
T ss_pred cchhHHHHHhcchHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHcC
Confidence 22 235666666778888888887664 36888888877766544
No 327
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=31.39 E-value=6.7e+02 Score=28.77 Aligned_cols=166 Identities=10% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-
Q 047123 291 SVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQ- 369 (579)
Q Consensus 291 ~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~- 369 (579)
..+...+..++...-...+.++.++...+.....- ...-.+.-..-.+..-..+......+|..++..++..-..+..
T Consensus 444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~d 522 (727)
T PF12726_consen 444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLSD 522 (727)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcC
Q ss_pred cCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCh
Q 047123 370 ERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS---ISD 446 (579)
Q Consensus 370 ~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~---~~~ 446 (579)
.+....++.++-+... ++.+.|...|......+.+...+.. ++++.-...-.....++..+. ...
T Consensus 523 ~~~~~~i~s~lfsp~~--~l~qaA~~llk~~~d~~~R~e~i~~----------ll~~~~~~tL~ai~~~l~~~~~~~~~~ 590 (727)
T PF12726_consen 523 PDAAQAIWSLLFSPDD--DLYQAAQDLLKQAFDVDGRLEAIQA----------LLQSNFSPTLSAINWSLRQLTKLKFFE 590 (727)
T ss_pred cchhhHHHhheeCCCh--HHHHHHHHHHHHHhcCCcHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHhhhhhc
Q ss_pred hhHHHHHHHHHHHHHhccCCCCHhH
Q 047123 447 GNKRAVASCMGSLIKLMECPKPVGL 471 (579)
Q Consensus 447 ~~~~~i~~~v~~Lv~lL~~~~~~~v 471 (579)
...+ +.....-+++.| .+....+
T Consensus 591 p~pr-~vr~~~DIi~~L-cdp~~Gi 613 (727)
T PF12726_consen 591 PCPR-MVRCLMDIIEVL-CDPVSGI 613 (727)
T ss_pred chHH-HHHHHHHHHHHH-cCCCCCc
No 328
>PRK09169 hypothetical protein; Validated
Probab=30.69 E-value=1.3e+03 Score=30.06 Aligned_cols=52 Identities=19% Similarity=0.132 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHH
Q 047123 178 FKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALS 230 (579)
Q Consensus 178 ~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~ 230 (579)
....+...|......++.....+-.. .|..++.-|.+.++...-..++..|.
T Consensus 180 ~c~~aa~~lA~~la~~~~l~~al~~q-~va~~lnalSKwp~~~~cr~a~~~lA 231 (2316)
T PRK09169 180 DCQTAAEQLADRLASDSRLLQAMDAQ-EVANALNALSKWPDSPRCRNAAERLA 231 (2316)
T ss_pred HHHHHHHHHHHHhccCHHHHHhcchH-HHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 33444444544444444444333322 24444443322554333344444444
No 329
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.04 E-value=3.2e+02 Score=31.86 Aligned_cols=96 Identities=15% Similarity=0.027 Sum_probs=66.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhc--cChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh
Q 047123 162 LFIRDIFTRLQIGGVEFKKKALESLLQLLK--DDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDES 239 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~--~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~ 239 (579)
.....-+.+|.+.+...|.+|+..|....- ...++.-.-.-+...|.++..+. ..++-+...|..+|.+++....+.
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~-~k~~L~v~~a~~~i~~m~~~sgDF 881 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLL-CKDPLIVQRAFSCIEQMGKYSGDF 881 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHh-cCchHHHHHHHHHHHHHHHHhhhH
Confidence 344455667778899999999998876421 12223333335678999999999 999999999999999999844444
Q ss_pred HHHHHhcCCHHHHHHHHcc
Q 047123 240 RKIVFEEGGLGPLLRILET 258 (579)
Q Consensus 240 ~~~i~~~g~l~~Lv~lL~~ 258 (579)
...=+-..++|.+-.++.+
T Consensus 882 v~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 882 VASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4443445566666655543
No 330
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=30.02 E-value=3.5e+02 Score=31.69 Aligned_cols=127 Identities=13% Similarity=0.138 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHH
Q 047123 343 NLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGE 422 (579)
Q Consensus 343 ~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~ 422 (579)
+.++..+.-+|++||-.++... ...+|.|++-|+.... ..++.+.+-++..+|... ..+++ ..++.+..
T Consensus 945 ~~vra~~vvTlakmcLah~~La-----Kr~~P~lvkeLe~~~~-~aiRnNiV~am~D~C~~Y--Tam~d---~YiP~I~~ 1013 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLA-----KRLMPMLVKELEYNTA-HAIRNNIVLAMGDICSSY--TAMTD---RYIPMIAA 1013 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHhhhH-HHHhcceeeeehhhHHHH--HHHHH---HhhHHHHH
Confidence 3577788888999987654421 2347777777766543 345555555555554431 12333 58999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhh
Q 047123 423 FIKRGNVLLQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLL 483 (579)
Q Consensus 423 lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~ 483 (579)
-|.+.++-++..+.-.|.+|-+.+-.+ .=++- +..+..++ ++ +.+++..|--.++.+.
T Consensus 1014 ~L~Dp~~iVRrqt~ilL~rLLq~~~vK-w~G~Lf~Rf~l~l~-D~-~edIr~~a~f~~~~vL 1072 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQFGIVK-WNGELFIRFMLALL-DA-NEDIRNDAKFYISEVL 1072 (1529)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhhhhh-cchhhHHHHHHHHc-cc-CHHHHHHHHHHHHHHH
Confidence 999999999999999999986332111 11111 45555555 32 4556655555555543
No 331
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=29.48 E-value=7.6e+02 Score=26.81 Aligned_cols=172 Identities=13% Similarity=0.094 Sum_probs=95.7
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhc--C---------CCHHHHHHHHHHHHHhhcChhhHHHH
Q 047123 257 ETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFR--S---------GTALTQSHAVGAIRNIAAVEDIKAAL 325 (579)
Q Consensus 257 ~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~--~---------~~~~~~~~a~~aL~nLs~~~~~~~~l 325 (579)
.+.+.++...|-..|..+..+-+. ...|..|+.+-. . .++.+|......|..=.....
T Consensus 247 ad~~~~V~~~ae~~LKr~~~~~ed------~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~----- 315 (501)
T PF13001_consen 247 ADSNSSVSDRAEDLLKRLSVSLED------PDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAAT----- 315 (501)
T ss_pred eCCcchHHHHHHHHHhhcCCCCCC------HHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHh-----
Confidence 345677888888888888865332 335577777554 1 345677777666643211000
Q ss_pred HHcCCHHHHHHHhcCC--CHHHHHHHHHHH---HHHhcCChhhH-HH---HHhcCcHHHHHHhh---ccCCCChHHHHHH
Q 047123 326 AEEGAVPVLVQSLTSS--SNLAQENAADCI---ATLAASGEYFR-LL---IIQERGLQRLMHLI---QDSTSSIVTVENA 393 (579)
Q Consensus 326 ~~~g~v~~Lv~lL~~~--~~~v~~~a~~~L---~~La~~~~~~r-~~---l~~~g~i~~Lv~ll---~~~~~~~~~~~~A 393 (579)
.....+..+...+.+. +..++..++..+ ......-.... .. .+..++.+.+ +.- .........+..+
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~-~~~~~~~~~~~~~~lR~~a 394 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLI-QDSSSQSNSSEDIELRSLA 394 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccc-ccccccCCCcccHHHHHHH
Confidence 0011222333334444 456666666666 44333221111 11 1123333333 100 1112345889999
Q ss_pred HHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123 394 LLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS 443 (579)
Q Consensus 394 ~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~ 443 (579)
..+|+.|+.. +.. +..+.+.+..|..-|...+++++...-.||..++
T Consensus 395 Ye~lG~L~~~~p~l---~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~ 442 (501)
T PF13001_consen 395 YETLGLLAKRAPSL---FSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLA 442 (501)
T ss_pred HHHHHHHHccCccc---ccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHH
Confidence 9999999987 211 1111267888888888889999988888888887
No 332
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=29.45 E-value=2.6e+02 Score=22.13 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=42.5
Q ss_pred HhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc----cCCHHHHHHHHHHH
Q 047123 201 AKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILE----TGSMPLKEKAAIGV 271 (579)
Q Consensus 201 ~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~----~~~~~v~~~aa~~L 271 (579)
.+..++.++..++....+.++|+..+.++..+.. .+...+ ..| =++++.++. +++..+...|-.++
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~---~~~~~i-~SG-W~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQ---SRGENI-KSG-WKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH---HhHHHH-Hhc-cHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 3556788888876536689999999999999987 222333 444 455555553 34555665555544
No 333
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=29.33 E-value=3e+02 Score=32.12 Aligned_cols=126 Identities=15% Similarity=0.181 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHH
Q 047123 175 GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLR 254 (579)
Q Consensus 175 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~ 254 (579)
.+-++..+.-.|+.+|-.+++-.+. .+|.|++-|+.+....+|.+.+-+++.+|. .+... -...+|.+..
T Consensus 944 ~~~vra~~vvTlakmcLah~~LaKr-----~~P~lvkeLe~~~~~aiRnNiV~am~D~C~---~YTam--~d~YiP~I~~ 1013 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRLAKR-----LMPMLVKELEYNTAHAIRNNIVLAMGDICS---SYTAM--TDRYIPMIAA 1013 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhhhHHHHhcceeeeehhhHH---HHHHH--HHHhhHHHHH
Confidence 4556778888888888766554432 488999877745567777777777777766 22222 2457999999
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcC--cHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 047123 255 ILETGSMPLKEKAAIGVEAITTDPENAWAISAYG--GVSVLIEAFRSGTALTQSHAVGAIRNI 315 (579)
Q Consensus 255 lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~a~~aL~nL 315 (579)
-|+++++-++..+...|.+|-...-.+| .| .++.+..++ +.+++++..+--++..+
T Consensus 1014 ~L~Dp~~iVRrqt~ilL~rLLq~~~vKw----~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~v 1071 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQFGIVKW----NGELFIRFMLALL-DANEDIRNDAKFYISEV 1071 (1529)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhhhhhc----chhhHHHHHHHHc-ccCHHHHHHHHHHHHHH
Confidence 9999999999999999999986443333 22 223333333 44555555555555444
No 334
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=29.06 E-value=4.7e+02 Score=24.19 Aligned_cols=70 Identities=19% Similarity=0.098 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcccc---hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHH
Q 047123 389 TVENALLAISSLSLS---DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASCMGSLIK 461 (579)
Q Consensus 389 ~~~~A~~aL~~L~~~---~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~v~~Lv~ 461 (579)
.+-.|...+..|... +..-.++. ..+..+-..|.+.++++...++.+|..|. .++..-.++.....+|+.
T Consensus 54 y~flA~~g~~dll~~~~~~kilPvlP---qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp 127 (183)
T PF10274_consen 54 YRFLARQGIKDLLERGGGEKILPVLP---QLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLP 127 (183)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 444555555544433 22333333 37777888899999999999999999996 555555555555333333
No 335
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.88 E-value=58 Score=33.09 Aligned_cols=62 Identities=21% Similarity=0.276 Sum_probs=52.7
Q ss_pred HHHHHHHHhccChhhHHHHHhhCcHHHHHHh--hccCCCHHHHHHHHHHHHHhhccChhhHHHHH
Q 047123 182 ALESLLQLLKDDDKSAAVVAKEGNVGYLISL--LDFHHQSSIREQAVLALSIIVSANDESRKIVF 244 (579)
Q Consensus 182 Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~L--L~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~ 244 (579)
-.+.|+.+|...++....+.+-||++.++.- .+ +.+|-+++...-++.+|..++.++++.+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnid-D~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNID-DWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccC-CCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 4568889999999999999999999998874 34 56799999999999999997777777765
No 336
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=28.36 E-value=4.3e+02 Score=23.52 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhc
Q 047123 176 VEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLD 214 (579)
Q Consensus 176 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~ 214 (579)
..+|.+|+..|..++..............+++.|+..|.
T Consensus 108 ~~lRl~aL~~L~~fa~s~~G~~~LA~h~~Ai~RLv~~L~ 146 (149)
T PF12331_consen 108 CTLRLEALRTLTSFAFSPFGALQLASHPTAIPRLVRALH 146 (149)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHhCchhHHHHHHHHH
Confidence 467889999999999877766666667789999998876
No 337
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.91 E-value=82 Score=32.06 Aligned_cols=63 Identities=13% Similarity=0.129 Sum_probs=51.4
Q ss_pred HHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHh--cCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 047123 307 HAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSL--TSSSNLAQENAADCIATLAASGEYFRLLIIQ 369 (579)
Q Consensus 307 ~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL--~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~ 369 (579)
+..+.+.+|+. ++++++.+.+.|+++.++.-. ++.+|-+++..+.|+.+|...+...+..+.+
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 46778888887 889999999999999876543 5668899999999999999887776666654
No 338
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.54 E-value=1.1e+03 Score=29.07 Aligned_cols=187 Identities=10% Similarity=0.005 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHh----cCC---CHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 047123 299 SGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSL----TSS---SNLAQENAADCIATLAASGEYFRLLIIQER 371 (579)
Q Consensus 299 ~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL----~~~---~~~v~~~a~~~L~~La~~~~~~r~~l~~~g 371 (579)
....+++.....+|.++-..+... + -+| -+.+.+++ ..+ ..++...+-.+|.-++.+.-..-..=.-.+
T Consensus 853 ~~~~evr~~sl~~l~silet~ge~--l-l~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~ 928 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVGEH--L-LHG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILD 928 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccchh--h-ccc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHH
Confidence 445567777778887775432211 1 111 22222232 222 335666666666666553211001111145
Q ss_pred cHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhH
Q 047123 372 GLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNK 449 (579)
Q Consensus 372 ~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~ 449 (579)
.++.++.+..-..+ ..+--.|.+.+|+++.. .. ++-..++..-..+....+..=+ ....+-
T Consensus 929 lidtl~~fs~Qktd-lNISltAi~lfWtvsDfl~~----------------km~S~sed~~~~~~~e~~~ss~~~~~~l~ 991 (1610)
T KOG1848|consen 929 LIDTLLVFSRQKTD-LNISLTAIGLFWTVSDFLKN----------------KMFSTSEDSCAYNSVEDLYSSMKSKEILP 991 (1610)
T ss_pred HHHHHHHHHhhhcc-ccccHHHHHHHHHHHHHHHh----------------hhhccchhhhhhcchhhhcccccchhhhh
Confidence 56666666554433 35667788888887755 22 1111122222222222222200 111122
Q ss_pred HHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcc-hhHHHhhcccHHHHHhhcC
Q 047123 450 RAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSN-RKELVRDEKSVMRLMQMLD 507 (579)
Q Consensus 450 ~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~-~~~~~~~~~~i~~Lv~lL~ 507 (579)
+.+.-. ...|.++. ++.-.+||..|++.+..+...+.+ ...-+++.-....+..||+
T Consensus 992 e~lwi~ll~~L~~~~-~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd 1050 (1610)
T KOG1848|consen 992 EVLWIMLLVHLADLC-EDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLD 1050 (1610)
T ss_pred hHHHHHHHHHHHHHh-ccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhc
Confidence 222222 44445555 445577788888877777654433 2222333334445566666
No 339
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=26.80 E-value=3.7e+02 Score=22.27 Aligned_cols=68 Identities=18% Similarity=0.110 Sum_probs=48.8
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHh-----ccCCCCHhHHHHHHHHHHHh
Q 047123 415 SFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKL-----MECPKPVGLQEAATDAVLSL 482 (579)
Q Consensus 415 g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~l-----L~~~~~~~v~~~a~~aL~~L 482 (579)
.++..|.+-|.+.++.++..|+.+|-.+. .++.....+... +..++++ .+...+..||..+.+.+...
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 35666777778889999999999999998 667777777666 4455442 22334778888888776554
No 340
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=26.56 E-value=3.5e+02 Score=25.26 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=44.5
Q ss_pred HHhhcCcHHHHHHHHHhcC---C---------------HHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHhccCCCCH
Q 047123 409 ILSSTTSFIIQLGEFIKRG---N---------------VLLQQVSSSLLGNLS-ISDGNKRAVASCMGSLIKLMECPKPV 469 (579)
Q Consensus 409 l~~~~~g~i~~L~~lL~~~---~---------------~~v~~~A~~aL~~L~-~~~~~~~~i~~~v~~Lv~lL~~~~~~ 469 (579)
+... |++..++.+|... . ..+-..+...|..++ .+.+++..+.+.++.++..+ .....
T Consensus 39 lrnl--~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~~~~l~~~~-~~~~~ 115 (207)
T PF01365_consen 39 LRNL--GIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKHLDFLISIF-MQLQI 115 (207)
T ss_dssp HHHT--THHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-----H-HCCCH
T ss_pred HHHH--HHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHHH-HHhhc
Confidence 4444 7777777776431 1 245577888899999 88899999999877555544 22222
Q ss_pred hHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCC
Q 047123 470 GLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGG 528 (579)
Q Consensus 470 ~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~ 528 (579)
..-..+..+|..+..+....-.-+. +.-|..++.++...... ...+..|..++..
T Consensus 116 ~~~~~~~d~l~~i~~dN~~L~~~i~-e~~I~~~i~ll~~~gr~---~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 116 GYGLGALDVLTEIFRDNPELCESIS-EEHIEKFIELLRKHGRQ---PRYLDFLSSLCVC 170 (207)
T ss_dssp -TTHHHHHHHHHHHTT-------------------------------------------
T ss_pred cCCchHHHHHHHHHHCcHHHHHHhh-HHHHHHHHHHHHHcCCC---hHHHHHHhhhccc
Confidence 2224567778888776665555554 34489999999863311 2244445555443
No 341
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=25.34 E-value=3.2e+02 Score=27.84 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHhcC--cHHHHHHHhcCCC---HHHHHHHHHHHHHhhcCh
Q 047123 263 LKEKAAIGVEAITTDPENAWAISAYG--GVSVLIEAFRSGT---ALTQSHAVGAIRNIAAVE 319 (579)
Q Consensus 263 v~~~aa~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~ll~~~~---~~~~~~a~~aL~nLs~~~ 319 (579)
+|-.|...+..+..++.....+...+ .+..|++++..++ ..++..|+.+|..++...
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~ 299 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKR 299 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 45556666666666667777777766 9999999998653 478999999999988743
No 342
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=25.25 E-value=6.9e+02 Score=28.34 Aligned_cols=59 Identities=8% Similarity=-0.006 Sum_probs=43.7
Q ss_pred CHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHh
Q 047123 468 PVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVL 526 (579)
Q Consensus 468 ~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~ 526 (579)
....|..+...|+.+.+..+.....+.+..-+..|+++|..+...+.-..|+-+|..|-
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 45678899999999998876665555568889999999987766655556665555554
No 343
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=25.24 E-value=1.8e+02 Score=26.12 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhhhccccccCCCCCCCChhHHhHHHHHHHHHHH
Q 047123 22 PLQPLLDLITNILSLLLLSSLTVRSFVGRWQILRTKLVSLQSSLSSISDSPHWSENPLLHTLLPSLLSTLQR 93 (579)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~p~~~~~~~~~~~~l~~ 93 (579)
..++.+..+.++.. ++.. ...++.+.++..||+-|-..|+. +....|+ .+-|..+.++|++
T Consensus 43 ~i~~~~~~L~~v~~----~~~~-~~~kr~~~D~~KRL~iLfd~ln~-----g~Ls~~v-~~~L~~L~~aL~~ 103 (157)
T PF07304_consen 43 PIEEVLRELQRVLE----ACPP-SIKKRVVDDIEKRLNILFDHLNN-----GKLSKPV-VDKLHQLAQALQA 103 (157)
T ss_dssp -HHHHHHHHHHHHH----HHHT-TS-HHHHHHHHHHHHHHHHHHHH-----T-S-HHH-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH----Hccc-ccchhHHHHHHHHHHHHHHHHhc-----CCCCHHH-HHHHHHHHHHHHc
Confidence 34455555555555 3332 34677799999999999999975 2244555 5666666666663
No 344
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=24.91 E-value=2.4e+02 Score=33.91 Aligned_cols=119 Identities=13% Similarity=0.098 Sum_probs=0.0
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHH
Q 047123 151 PGPGSHKQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALS 230 (579)
Q Consensus 151 p~~~a~~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~ 230 (579)
|..+....++....+.+...+++.+..+|..|++++..+.+.........+ +..++.+++..++..-|..|...+.
T Consensus 805 ~~m~s~l~~~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v----~~~~~~ll~~~~~~~~r~~a~e~~~ 880 (1549)
T KOG0392|consen 805 PLMHSFLHPLGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATV----INGFLPLLGDLDKFVRRQGADELIE 880 (1549)
T ss_pred HhhhhhhhhhhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhccchhhHhhhhhHHHHHH
Q ss_pred HhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHh
Q 047123 231 IIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAI 274 (579)
Q Consensus 231 ~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~L 274 (579)
.+.. ....--.-...=.++||++.+......++..+..++..+
T Consensus 881 ~l~~-~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~l 923 (1549)
T KOG0392|consen 881 LLDA-VLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKL 923 (1549)
T ss_pred HHHH-hhcccccccceeehhhhhcccccchHHHHHHHHHHHHHH
No 345
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=24.90 E-value=6.7e+02 Score=24.61 Aligned_cols=37 Identities=19% Similarity=-0.048 Sum_probs=22.3
Q ss_pred HHHHHhcCCHH-HHHHHHccC--CHHHHHHHHHHHHHhcC
Q 047123 240 RKIVFEEGGLG-PLLRILETG--SMPLKEKAAIGVEAITT 276 (579)
Q Consensus 240 ~~~i~~~g~l~-~Lv~lL~~~--~~~v~~~aa~~L~~Ls~ 276 (579)
+..+.+.+++. -|+.+|.+. +..+-..+...|.+|+.
T Consensus 33 ~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 33 RRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTW 72 (266)
T ss_pred HHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCC
Confidence 44555556555 466666553 46666667777777764
No 346
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=24.15 E-value=2.6e+02 Score=23.51 Aligned_cols=41 Identities=22% Similarity=0.052 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHH
Q 047123 160 LVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVA 201 (579)
Q Consensus 160 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~ 201 (579)
..+.|+-|++.|...++++...|+..|-+.|.++ .+...++
T Consensus 6 ~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v 46 (115)
T PF14663_consen 6 EDWGIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV 46 (115)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH
Confidence 3567899999999999999999999999999766 5544443
No 347
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=24.03 E-value=1e+03 Score=26.97 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhc
Q 047123 218 QSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETG-SMPLKEKAAIGVEAIT 275 (579)
Q Consensus 218 ~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~aa~~L~~Ls 275 (579)
.+..|..++..|+.+....+.....|.+...++.|++.|... +..+...|..+|..|-
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 456788899999988886788888899999999999999875 5666777777777665
No 348
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=23.29 E-value=2.7e+02 Score=22.34 Aligned_cols=57 Identities=19% Similarity=0.249 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhc-cCCCCHhHHHHHHHHHHHhh
Q 047123 427 GNVLLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLM-ECPKPVGLQEAATDAVLSLL 483 (579)
Q Consensus 427 ~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL-~~~~~~~v~~~a~~aL~~L~ 483 (579)
++-.+|+.|+..|..++ ........+... +..+.+.+ +..++......|...|..|.
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 45689999999999998 222222223233 55666655 33557778888888888874
No 349
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=22.88 E-value=2.1e+03 Score=29.78 Aligned_cols=311 Identities=12% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhc--------CCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChh
Q 047123 249 LGPLLRILETGSMPLKEKAAIGVEAIT--------TDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVED 320 (579)
Q Consensus 249 l~~Lv~lL~~~~~~v~~~aa~~L~~Ls--------~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~ 320 (579)
++.|+..+...+.++......++..+- ........=.-.+.++.++++|.+.+...+...+-.|..+..+..
T Consensus 986 ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~ 1065 (3550)
T KOG0889|consen 986 LDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMP 1065 (3550)
T ss_pred HHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhch
Q ss_pred hHHHHH-HcCCHHHHHHHh-------cCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--cCcHHHHHHhhccCCCChHHH
Q 047123 321 IKAALA-EEGAVPVLVQSL-------TSSSNLAQENAADCIATLAASGEYFRLLIIQ--ERGLQRLMHLIQDSTSSIVTV 390 (579)
Q Consensus 321 ~~~~l~-~~g~v~~Lv~lL-------~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~--~g~i~~Lv~ll~~~~~~~~~~ 390 (579)
....+- ....+..++..+ .++..+.....+.-+...+..+......=.. .+.+..++.-+.+.+. .++
T Consensus 1066 ~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~--~VR 1143 (3550)
T KOG0889|consen 1066 SLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNS--DVR 1143 (3550)
T ss_pred HHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCch--HHH
Q ss_pred HHHHHHHHHcccc--hhHHHHHhhcCcHH--HHHHHHHhcCCHHHHHHHHHHHHHhc--------CChhhHHHHHHH---
Q 047123 391 ENALLAISSLSLS--DSAARILSSTTSFI--IQLGEFIKRGNVLLQQVSSSLLGNLS--------ISDGNKRAVASC--- 455 (579)
Q Consensus 391 ~~A~~aL~~L~~~--~~~~~l~~~~~g~i--~~L~~lL~~~~~~v~~~A~~aL~~L~--------~~~~~~~~i~~~--- 455 (579)
+.+...|.+++.. ..+..+++.-+.++ +.+.+-++...-..|..-..++..+. .+++....+...
T Consensus 1144 ~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~~L 1223 (3550)
T KOG0889|consen 1144 EFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLIAL 1223 (3550)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHHHh
Q ss_pred --------HHHHHHhccCCCCHhH----HHHHHHHHHHhhcCCcchhHHHhh--cccHHHHHhhcCCCchhhhhHHHHHH
Q 047123 456 --------MGSLIKLMECPKPVGL----QEAATDAVLSLLTVRSNRKELVRD--EKSVMRLMQMLDPKNEALNKKFPVMV 521 (579)
Q Consensus 456 --------v~~Lv~lL~~~~~~~v----~~~a~~aL~~L~~~~~~~~~~~~~--~~~i~~Lv~lL~~~~~~~~k~~av~~ 521 (579)
+. +.+.. ..+.... |..|..++.......+.+...... ++.+..+.+-|..+.++.........
T Consensus 1224 a~~~~~~~~~-i~k~~-~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l 1301 (3550)
T KOG0889|consen 1224 ADAEEDELAT-IQKTS-DYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGL 1301 (3550)
T ss_pred hhhhhhhhhh-hhccc-ccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHH
Q ss_pred HHHHhCCCChhHHHHHHHcCchHHHHhhhccCCchHHHHHHHHhc
Q 047123 522 TAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKVLQRLAG 566 (579)
Q Consensus 522 L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~~~ak~~~~~l~~ 566 (579)
...++.+.. +-+..++.+.-+.|..|.+... -.-..++++++
T Consensus 1302 ~~v~~~~~~--~~ke~lq~~lrplL~~l~d~~~-lsv~~l~~ls~ 1343 (3550)
T KOG0889|consen 1302 RKVLAQDVK--LPKELLQSHLRPLLMNLSDHNN-LSVPGLEGLSR 1343 (3550)
T ss_pred Hhhhhcccc--ccHHHHHhhHHHHHHhhhHhhh-hhHHHHHHHHH
No 350
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=21.70 E-value=1.4e+02 Score=29.92 Aligned_cols=57 Identities=23% Similarity=0.321 Sum_probs=43.4
Q ss_pred HhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhcc--------------ChhhHHHHHhcCCHHHHHHHHcc
Q 047123 201 AKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSA--------------NDESRKIVFEEGGLGPLLRILET 258 (579)
Q Consensus 201 ~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~--------------~~~~~~~i~~~g~l~~Lv~lL~~ 258 (579)
.+...+..++.-|. +++...|..|+++|.-++.+ -..+...+.+.|++++++.+|+.
T Consensus 57 ~~~~~i~~ll~~L~-~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 57 QRKDFIEKLLDQLE-SSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred hHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 35567888888888 88899999999999988763 11233456678899999998865
No 351
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=20.99 E-value=5e+02 Score=21.72 Aligned_cols=68 Identities=21% Similarity=0.134 Sum_probs=47.7
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCC
Q 047123 416 FIIQLGEFIK-RGNVLLQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVR 486 (579)
Q Consensus 416 ~i~~L~~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~ 486 (579)
.+|.+...|. +..++.+..+-+++..|+......+.+.++ ++.+++-. ..... ...+..+|..+....
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~-~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNW-TQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcc-ccchh--HHHHHHHHHHHHHcc
Confidence 5677777787 778899999999999999655555555555 66666666 33222 466777777777543
No 352
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.58 E-value=3.9e+02 Score=31.14 Aligned_cols=94 Identities=18% Similarity=0.109 Sum_probs=60.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHh---hcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHH
Q 047123 289 GVSVLIEAFRSGTALTQSHAVGAIRNI---AAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRL 365 (579)
Q Consensus 289 ~i~~Lv~ll~~~~~~~~~~a~~aL~nL---s~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~ 365 (579)
++..-..+|.+++..+|-.++.+|.-- -...++.-.-.-+...|.++..+...++-+...|+.|+.+++....++-.
T Consensus 804 Il~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~ 883 (1014)
T KOG4524|consen 804 ILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVA 883 (1014)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHH
Confidence 344445567778888888888888532 22333333222345788899999999999999999999999875444322
Q ss_pred HHHhcCcHHHHHHhhcc
Q 047123 366 LIIQERGLQRLMHLIQD 382 (579)
Q Consensus 366 ~l~~~g~i~~Lv~ll~~ 382 (579)
.=.-...+|.+-+++.+
T Consensus 884 sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 884 SRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 11223455666555543
Done!