Query 047123
Match_columns 579
No_of_seqs 415 out of 2432
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 13:34:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047123.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047123hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l6x_A Catenin delta-1; cateni 100.0 1.1E-36 3.8E-41 327.6 36.2 375 163-545 49-492 (584)
2 3ul1_B Importin subunit alpha- 100.0 5E-36 1.7E-40 324.6 36.8 391 162-558 57-466 (510)
3 1xm9_A Plakophilin 1; armadill 100.0 5.4E-36 1.9E-40 319.6 31.6 362 163-530 3-452 (457)
4 3now_A UNC-45 protein, SD10334 100.0 1.6E-35 5.6E-40 328.6 34.2 382 163-553 331-762 (810)
5 3tpo_A Importin subunit alpha- 100.0 9.6E-35 3.3E-39 316.1 39.5 390 163-558 77-485 (529)
6 3l6x_A Catenin delta-1; cateni 100.0 1.1E-34 3.9E-39 311.9 36.2 365 202-574 46-485 (584)
7 4b8j_A Importin subunit alpha- 100.0 3.3E-34 1.1E-38 312.1 40.4 392 161-559 73-485 (528)
8 3now_A UNC-45 protein, SD10334 100.0 3.8E-35 1.3E-39 325.7 30.3 391 162-564 290-732 (810)
9 3nmz_A APC variant protein; pr 100.0 4.4E-34 1.5E-38 300.9 32.9 359 162-530 32-453 (458)
10 1wa5_B Importin alpha subunit; 100.0 6.5E-33 2.2E-37 302.0 41.9 390 161-558 86-498 (530)
11 3ul1_B Importin subunit alpha- 100.0 6.9E-33 2.4E-37 299.9 38.3 360 163-529 101-480 (510)
12 3tpo_A Importin subunit alpha- 100.0 1.6E-32 5.5E-37 298.6 40.0 360 162-528 119-498 (529)
13 1jdh_A Beta-catenin; beta-cate 100.0 6.6E-33 2.3E-37 301.4 35.9 386 163-558 102-518 (529)
14 1xm9_A Plakophilin 1; armadill 100.0 6.3E-33 2.2E-37 295.9 33.0 358 205-571 3-455 (457)
15 2z6h_A Catenin beta-1, beta-ca 100.0 4.6E-32 1.6E-36 302.1 37.9 388 163-559 99-516 (644)
16 4b8j_A Importin subunit alpha- 100.0 1.6E-31 5.5E-36 290.9 41.1 361 162-529 117-498 (528)
17 1jdh_A Beta-catenin; beta-cate 100.0 2.2E-32 7.6E-37 297.2 34.0 386 162-557 17-413 (529)
18 3nmz_A APC variant protein; pr 100.0 1.9E-32 6.6E-37 288.5 31.8 320 163-487 71-453 (458)
19 2jdq_A Importin alpha-1 subuni 100.0 8.4E-32 2.9E-36 286.4 35.3 386 164-558 22-431 (450)
20 2z6h_A Catenin beta-1, beta-ca 100.0 1.2E-31 4.1E-36 298.7 34.8 382 163-555 15-408 (644)
21 1wa5_B Importin alpha subunit; 100.0 1.2E-30 4.2E-35 284.0 41.9 362 162-530 130-513 (530)
22 2z6g_A B-catenin; FULL-length, 100.0 2.5E-31 8.6E-36 301.3 35.7 395 163-566 235-663 (780)
23 2jdq_A Importin alpha-1 subuni 100.0 2.2E-30 7.5E-35 275.5 40.7 360 163-530 65-446 (450)
24 2z6g_A B-catenin; FULL-length, 100.0 1E-29 3.6E-34 288.1 36.0 380 163-555 116-502 (780)
25 3nmw_A APC variant protein; AR 100.0 3.3E-29 1.1E-33 256.3 27.9 266 219-488 46-338 (354)
26 3nmw_A APC variant protein; AR 100.0 2.5E-29 8.6E-34 257.2 25.7 261 177-443 47-333 (354)
27 4db8_A Armadillo-repeat protei 99.9 9.3E-26 3.2E-30 220.8 26.2 237 163-402 13-251 (252)
28 4hxt_A De novo protein OR329; 99.9 2.4E-25 8.3E-30 217.2 28.1 238 163-403 3-242 (252)
29 4hxt_A De novo protein OR329; 99.9 3.5E-25 1.2E-29 216.1 27.5 235 204-443 2-240 (252)
30 4db8_A Armadillo-repeat protei 99.9 8.7E-25 3E-29 213.9 23.9 237 203-444 11-251 (252)
31 3opb_A SWI5-dependent HO expre 99.9 4.6E-23 1.6E-27 224.6 31.6 383 163-557 256-715 (778)
32 3opb_A SWI5-dependent HO expre 99.9 3.6E-23 1.2E-27 225.4 30.3 381 163-554 297-760 (778)
33 3tt9_A Plakophilin-2; cell adh 99.9 9.6E-24 3.3E-28 201.5 19.4 197 205-403 9-230 (233)
34 3tt9_A Plakophilin-2; cell adh 99.9 3E-23 1E-27 198.0 15.6 196 162-359 8-230 (233)
35 4db6_A Armadillo repeat protei 99.9 7.3E-22 2.5E-26 187.5 24.2 195 163-358 13-209 (210)
36 4db6_A Armadillo repeat protei 99.9 5.6E-22 1.9E-26 188.3 23.2 198 202-402 10-209 (210)
37 1xqr_A HSPBP1 protein; armadil 99.9 1.9E-20 6.6E-25 186.4 24.5 203 163-367 29-247 (296)
38 1xqr_A HSPBP1 protein; armadil 99.8 1.1E-18 3.9E-23 173.6 23.8 221 260-484 53-287 (296)
39 3grl_A General vesicular trans 99.7 3.5E-14 1.2E-18 151.1 37.9 395 163-564 61-540 (651)
40 3grl_A General vesicular trans 99.7 5.7E-14 2E-18 149.5 34.9 321 162-488 21-398 (651)
41 1b3u_A Protein (protein phosph 99.6 4.8E-14 1.6E-18 154.4 28.4 369 163-559 204-576 (588)
42 1b3u_A Protein (protein phosph 99.6 8.6E-14 3E-18 152.3 29.0 369 161-558 163-536 (588)
43 4fdd_A Transportin-1; heat rep 99.6 8.7E-14 3E-18 159.7 24.4 374 164-554 92-496 (852)
44 1oyz_A Hypothetical protein YI 99.6 3.9E-13 1.3E-17 133.1 24.7 253 163-480 24-278 (280)
45 4fdd_A Transportin-1; heat rep 99.6 3.8E-14 1.3E-18 162.7 19.5 349 163-526 129-511 (852)
46 1oyz_A Hypothetical protein YI 99.6 2.2E-12 7.5E-17 127.7 28.3 254 201-520 20-275 (280)
47 2vgl_B AP-2 complex subunit be 99.5 6.6E-12 2.3E-16 137.8 24.3 335 159-527 118-457 (591)
48 3ltm_A Alpha-REP4; protein eng 99.4 1.5E-11 5.1E-16 116.2 20.8 188 202-445 17-204 (211)
49 3ltj_A Alpharep-4; protein eng 99.4 3.3E-11 1.1E-15 112.9 20.6 185 203-443 13-197 (201)
50 3ltm_A Alpha-REP4; protein eng 99.4 5E-11 1.7E-15 112.5 20.4 185 163-403 20-204 (211)
51 2vgl_B AP-2 complex subunit be 99.4 3.2E-11 1.1E-15 132.3 21.8 294 163-486 14-313 (591)
52 3ltj_A Alpharep-4; protein eng 99.3 9.1E-11 3.1E-15 109.8 21.3 183 163-401 15-197 (201)
53 1w63_A Adapter-related protein 99.3 1.1E-09 3.7E-14 120.7 29.3 291 163-485 71-415 (618)
54 1ibr_B P95, importin beta-1 su 99.3 1.7E-10 5.8E-15 122.1 19.6 347 163-528 36-438 (462)
55 1w63_A Adapter-related protein 99.2 5.1E-09 1.7E-13 115.4 31.4 331 160-530 32-382 (618)
56 2bpt_A Importin beta-1 subunit 99.2 1.1E-09 3.7E-14 125.4 26.7 375 163-555 225-653 (861)
57 1ibr_B P95, importin beta-1 su 99.2 3.3E-10 1.1E-14 119.8 20.2 370 164-558 3-425 (462)
58 1qgr_A Protein (importin beta 99.2 2.4E-09 8.3E-14 122.7 26.6 348 165-527 93-479 (876)
59 2bpt_A Importin beta-1 subunit 99.2 2.9E-09 1E-13 121.8 26.4 333 162-508 369-734 (861)
60 1qgr_A Protein (importin beta 99.2 4.9E-09 1.7E-13 120.1 28.0 350 163-527 129-537 (876)
61 1u6g_C TIP120 protein, CAND1; 99.1 8.7E-10 3E-14 131.4 20.2 347 163-526 7-402 (1230)
62 4gmo_A Putative uncharacterize 99.1 7.5E-10 2.6E-14 123.3 14.2 191 206-401 36-257 (684)
63 4gmo_A Putative uncharacterize 99.0 3.1E-09 1.1E-13 118.3 15.3 194 247-443 34-257 (684)
64 2vgl_A Adaptor protein complex 99.0 1.6E-07 5.6E-12 103.1 27.3 327 163-526 75-432 (621)
65 1u6g_C TIP120 protein, CAND1; 98.9 1.5E-08 5E-13 120.8 18.9 348 160-527 46-463 (1230)
66 2vgl_A Adaptor protein complex 98.9 9.5E-08 3.2E-12 105.0 22.6 295 157-485 106-434 (621)
67 1ho8_A Vacuolar ATP synthase s 98.7 2.1E-05 7.3E-10 81.1 30.6 337 163-526 78-475 (480)
68 2iw3_A Elongation factor 3A; a 98.6 1.3E-05 4.3E-10 90.8 26.9 373 163-564 15-412 (986)
69 2qk2_A LP04448P; mini spindles 98.6 1.7E-06 6E-11 83.1 16.5 182 166-358 19-205 (242)
70 3b2a_A TON_1937, putative unch 98.5 1.3E-05 4.4E-10 74.0 19.6 187 163-360 34-220 (265)
71 4ady_A RPN2, 26S proteasome re 98.5 6.5E-05 2.2E-09 84.1 28.3 271 164-487 394-679 (963)
72 4ady_A RPN2, 26S proteasome re 98.5 0.00016 5.5E-09 81.0 31.2 300 170-530 366-679 (963)
73 1te4_A Conserved protein MTH18 98.3 4.8E-08 1.6E-12 84.6 -0.3 118 163-314 13-130 (131)
74 2db0_A 253AA long hypothetical 98.3 0.0004 1.4E-08 61.5 24.3 213 246-485 31-247 (253)
75 3tjz_B Coatomer subunit gamma; 98.3 2.9E-05 1E-09 78.2 18.9 308 175-523 40-349 (355)
76 2qk1_A Protein STU2; STU2P, XM 98.3 3.8E-06 1.3E-10 81.1 11.6 189 166-358 20-220 (249)
77 1te4_A Conserved protein MTH18 98.2 9.7E-08 3.3E-12 82.6 -0.7 121 202-355 10-130 (131)
78 2db0_A 253AA long hypothetical 98.2 0.0013 4.4E-08 58.3 24.0 213 162-401 32-245 (253)
79 2qk2_A LP04448P; mini spindles 98.2 1.3E-05 4.4E-10 76.9 12.2 178 251-443 19-204 (242)
80 3tjz_B Coatomer subunit gamma; 98.1 3.6E-05 1.2E-09 77.6 14.9 275 163-479 69-348 (355)
81 3b2a_A TON_1937, putative unch 98.1 0.00017 5.7E-09 66.7 16.6 221 328-565 32-260 (265)
82 3dad_A FH1/FH2 domain-containi 98.0 0.00041 1.4E-08 68.1 18.9 152 163-316 119-285 (339)
83 2qk1_A Protein STU2; STU2P, XM 97.9 4E-05 1.4E-09 73.8 10.8 201 293-508 21-236 (249)
84 1ho8_A Vacuolar ATP synthase s 97.9 0.001 3.5E-08 68.7 21.3 231 208-443 171-475 (480)
85 3dad_A FH1/FH2 domain-containi 97.8 0.0011 3.8E-08 65.1 18.8 153 251-403 122-287 (339)
86 1wa5_C Importin alpha RE-expor 97.3 0.044 1.5E-06 63.2 26.7 333 177-522 261-665 (960)
87 1wa5_C Importin alpha RE-expor 97.3 0.056 1.9E-06 62.3 26.8 343 166-527 89-525 (960)
88 2x1g_F Cadmus; transport prote 97.2 0.027 9.3E-07 65.0 22.6 294 174-486 476-816 (971)
89 2iw3_A Elongation factor 3A; a 97.2 0.059 2E-06 61.2 24.1 283 219-525 28-322 (986)
90 2x19_B Importin-13; nuclear tr 97.0 0.11 3.6E-06 59.9 25.5 337 172-526 459-845 (963)
91 4ffb_C Protein STU2; tubulin f 96.9 0.022 7.7E-07 55.3 15.7 185 167-358 14-212 (278)
92 2of3_A ZYG-9; multifunctional 96.7 0.037 1.3E-06 53.0 15.0 181 165-357 49-235 (266)
93 2x1g_F Cadmus; transport prote 96.6 0.71 2.4E-05 53.1 28.5 231 217-463 476-743 (971)
94 3ibv_A Exportin-T; karyopherin 96.5 0.1 3.5E-06 60.0 19.8 314 164-486 191-568 (980)
95 3oc3_A Helicase MOT1, MOT1; re 96.4 0.02 7E-07 59.6 11.4 245 205-480 175-432 (800)
96 3oc3_A Helicase MOT1, MOT1; re 96.4 0.01 3.4E-07 61.8 9.2 244 163-440 175-432 (800)
97 1upk_A MO25 protein; transfera 96.3 0.24 8.2E-06 48.6 18.1 222 324-553 73-313 (341)
98 2x19_B Importin-13; nuclear tr 96.0 1.5 5.1E-05 50.2 26.6 138 339-486 459-601 (963)
99 2fv2_A RCD1 required for cell 96.0 0.28 9.4E-06 46.1 16.2 222 218-442 14-266 (268)
100 4hat_C Exportin-1; heat repeat 95.9 0.87 3E-05 52.5 23.4 139 174-317 465-618 (1023)
101 2fv2_A RCD1 required for cell 95.4 0.27 9.3E-06 46.1 13.6 146 180-327 74-234 (268)
102 3u0r_A Apoptosis inhibitor 5; 95.4 2.1 7.2E-05 44.0 21.1 165 172-357 38-205 (507)
103 4ffb_C Protein STU2; tubulin f 95.4 0.49 1.7E-05 45.6 16.4 183 293-485 14-213 (278)
104 3ebb_A Phospholipase A2-activa 95.0 0.57 2E-05 45.8 15.4 182 206-393 105-297 (304)
105 3ebb_A Phospholipase A2-activa 94.8 1.2 3.9E-05 43.6 17.0 117 387-504 162-282 (304)
106 3m1i_C Exportin-1; heat repeat 94.6 8.8 0.0003 44.3 33.9 350 163-527 139-569 (1049)
107 3m1i_C Exportin-1; heat repeat 94.5 9.1 0.00031 44.2 33.0 295 174-485 207-570 (1049)
108 3u0r_A Apoptosis inhibitor 5; 94.4 5.2 0.00018 41.1 22.7 175 258-455 39-219 (507)
109 1upk_A MO25 protein; transfera 94.3 4.3 0.00015 39.8 24.0 215 243-461 74-304 (341)
110 3ibv_A Exportin-T; karyopherin 93.8 11 0.00039 43.0 25.1 285 175-483 21-360 (980)
111 4hat_C Exportin-1; heat repeat 93.6 13 0.00044 42.7 35.1 294 173-485 206-570 (1023)
112 2of3_A ZYG-9; multifunctional 93.5 3.7 0.00013 39.0 17.1 173 333-526 50-235 (266)
113 1lrv_A LRV, leucine-rich repea 92.9 0.046 1.6E-06 51.8 2.8 66 167-269 79-144 (244)
114 1lsh_A Lipovitellin (LV-1N, LV 92.6 9.1 0.00031 44.2 21.9 185 249-463 393-596 (1056)
115 1lsh_A Lipovitellin (LV-1N, LV 92.6 7.5 0.00026 44.9 21.2 167 289-486 392-578 (1056)
116 2f31_A Diaphanous protein homo 92.2 7.4 0.00025 36.2 17.2 165 181-347 20-217 (233)
117 3qml_C Protein SLS1, nucleotid 91.8 2.6 8.9E-05 40.6 13.2 145 164-315 24-187 (315)
118 3l9t_A Putative uncharacterize 91.5 8.2 0.00028 35.8 15.9 139 166-326 74-217 (240)
119 3eg5_B Protein diaphanous homo 91.4 9 0.00031 38.6 17.8 147 406-556 103-280 (383)
120 2f31_A Diaphanous protein homo 91.4 6.8 0.00023 36.5 15.9 147 415-562 43-220 (233)
121 3gjx_A Exportin-1; transport, 90.3 30 0.001 39.8 29.9 298 173-485 218-596 (1073)
122 3eg5_B Protein diaphanous homo 89.9 8.7 0.0003 38.7 16.1 145 283-432 105-282 (383)
123 1lrv_A LRV, leucine-rich repea 89.0 0.24 8.2E-06 46.9 3.5 43 166-227 102-144 (244)
124 3c2g_A SYS-1 protein; beta-cat 88.4 9.1 0.00031 37.5 13.8 158 267-427 263-450 (619)
125 3l9t_A Putative uncharacterize 88.3 8.2 0.00028 35.8 13.2 135 332-488 74-211 (240)
126 2bnx_A Diaphanous protein homo 88.3 20 0.0007 36.0 17.6 165 182-348 25-222 (386)
127 2bnx_A Diaphanous protein homo 86.8 18 0.00061 36.4 16.1 143 415-558 47-220 (386)
128 3a6p_A Exportin-5; exportin-5, 84.2 71 0.0024 37.4 25.3 296 163-485 12-381 (1204)
129 1x5b_A Signal transducing adap 81.6 4.7 0.00016 35.2 7.9 74 161-234 51-125 (163)
130 1mhq_A ADP-ribosylation factor 79.6 7.4 0.00025 33.4 8.3 73 161-234 37-116 (148)
131 3a6p_A Exportin-5; exportin-5, 79.4 1E+02 0.0035 36.0 20.8 210 217-443 25-275 (1204)
132 3ldz_A STAM-1, signal transduc 79.0 7.5 0.00026 33.0 8.1 73 161-234 41-114 (140)
133 3gjx_A Exportin-1; transport, 76.0 1.2E+02 0.004 34.9 28.7 217 163-403 29-276 (1073)
134 3g2s_A C-terminal fragment of 74.9 13 0.00045 31.8 8.5 74 161-234 47-126 (149)
135 1juq_A ADP-ribosylation factor 73.0 11 0.00036 33.3 7.7 74 161-234 49-128 (171)
136 3qml_C Protein SLS1, nucleotid 72.7 22 0.00074 34.3 10.1 134 344-484 43-189 (315)
137 3zyq_A Hepatocyte growth facto 71.3 11 0.00037 34.8 7.7 73 162-234 45-118 (226)
138 3c2g_A SYS-1 protein; beta-cat 66.8 1E+02 0.0035 30.3 13.7 131 223-355 261-400 (619)
139 1dvp_A HRS, hepatocyte growth 66.4 12 0.0004 34.5 6.8 73 162-234 42-115 (220)
140 3o2t_A Symplekin; heat repeat, 60.5 97 0.0033 30.9 12.6 106 162-275 63-182 (386)
141 1x5b_A Signal transducing adap 56.3 38 0.0013 29.4 7.9 72 415-486 52-127 (163)
142 3gs3_A Symplekin, LD45768P; he 55.2 1.4E+02 0.0046 28.0 12.3 106 162-275 53-172 (257)
143 1elk_A Target of MYB1; superhe 54.5 40 0.0014 29.0 7.7 73 162-234 53-130 (157)
144 1mhq_A ADP-ribosylation factor 51.4 71 0.0024 27.1 8.7 73 415-487 38-119 (148)
145 3g2s_A C-terminal fragment of 50.7 70 0.0024 27.2 8.5 73 415-487 48-129 (149)
146 3ldz_A STAM-1, signal transduc 46.8 37 0.0013 28.6 6.1 70 415-485 42-115 (140)
147 3zyq_A Hepatocyte growth facto 43.7 44 0.0015 30.7 6.6 72 415-486 45-120 (226)
148 3gs3_A Symplekin, LD45768P; he 43.2 2.1E+02 0.0071 26.7 22.3 194 158-363 11-248 (257)
149 3gae_A Protein DOA1; UFD3, CDC 41.0 64 0.0022 30.1 7.4 103 387-493 104-226 (253)
150 1juq_A ADP-ribosylation factor 39.9 93 0.0032 27.1 7.8 73 415-487 50-131 (171)
151 1vdy_A Hypothetical protein (R 39.8 1.1E+02 0.0038 25.6 7.8 71 415-485 49-131 (140)
152 1uk5_A BAG-family molecular ch 37.8 22 0.00075 28.6 2.9 24 27-50 29-52 (111)
153 3gae_A Protein DOA1; UFD3, CDC 37.4 32 0.0011 32.2 4.7 143 207-362 59-221 (253)
154 1dvp_A HRS, hepatocyte growth 37.1 59 0.002 29.6 6.4 71 415-485 42-116 (220)
155 3o2t_A Symplekin; heat repeat, 36.7 3.3E+02 0.011 27.1 21.9 101 163-274 26-127 (386)
156 1vsy_5 Proteasome activator BL 31.7 3.8E+02 0.013 30.4 13.0 181 331-526 135-364 (997)
157 2xpp_A IWS1, ECU08_0440; trans 28.4 2.7E+02 0.0091 23.5 9.2 82 317-402 49-136 (145)
158 4atg_A TAF6; transcription, TF 25.6 91 0.0031 27.8 5.2 113 289-402 41-162 (196)
159 3s4w_B Protein FACD2, fanconi 25.4 8.7E+02 0.03 28.4 17.8 290 249-566 159-504 (1323)
160 1vdy_A Hypothetical protein (R 24.9 2.1E+02 0.0073 23.9 7.1 73 161-234 48-130 (140)
161 1elk_A Target of MYB1; superhe 24.3 2.7E+02 0.0092 23.6 7.9 71 415-485 53-131 (157)
162 3pst_A Protein DOA1; protein d 22.8 2.3E+02 0.0079 28.6 8.1 133 222-364 243-395 (425)
163 3l3f_X Protein DOA1, DOA1/UFD3 21.8 1.2E+02 0.004 30.0 5.7 132 225-365 183-333 (362)
164 3pst_A Protein DOA1; protein d 21.7 3.1E+02 0.011 27.6 8.8 136 305-449 243-395 (425)
165 2npp_B PP2A, B subunit, serine 20.3 6.8E+02 0.023 25.3 13.4 226 241-487 156-402 (449)
No 1
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.1e-36 Score=327.57 Aligned_cols=375 Identities=17% Similarity=0.202 Sum_probs=315.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhcc-ChhhHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSA-NDESRK 241 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~-~~~~~~ 241 (579)
.|+.||.+|++++++.+..|+.+|.+++..++.++..|.+.|+||.||++|+ +++..+|+.|+++|.+|+.. +++++.
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~-s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLD-HPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGG-CSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHC-CCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 5899999999999999999999999999999999999999999999999999 99999999999999999983 589999
Q ss_pred HHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhc------------------CCCH
Q 047123 242 IVFEEGGLGPLLRILET-GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFR------------------SGTA 302 (579)
Q Consensus 242 ~i~~~g~l~~Lv~lL~~-~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~------------------~~~~ 302 (579)
.+++.|+|++|+++|.+ ++.++++.++++|++|+.+++++..|++ ++++.|+.++. ..++
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccH
Confidence 99999999999999998 5889999999999999999999999996 57999999772 2357
Q ss_pred HHHHHHHHHHHHhhcCh-hhHHHHHHc-CCHHHHHHHhcC------CCHHHHHHHHHHHHHHhcCChh------------
Q 047123 303 LTQSHAVGAIRNIAAVE-DIKAALAEE-GAVPVLVQSLTS------SSNLAQENAADCIATLAASGEY------------ 362 (579)
Q Consensus 303 ~~~~~a~~aL~nLs~~~-~~~~~l~~~-g~v~~Lv~lL~~------~~~~v~~~a~~~L~~La~~~~~------------ 362 (579)
.++++|+++|+||+.+. ++|..+++. |+++.|+.++++ .+...++.|+++|.||+.....
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 89999999999999854 568889875 566899999864 4567999999999999864110
Q ss_pred -------------hHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccch------hHHHHHhhcCcHHHHHHHH
Q 047123 363 -------------FRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSD------SAARILSSTTSFIIQLGEF 423 (579)
Q Consensus 363 -------------~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~------~~~~l~~~~~g~i~~L~~l 423 (579)
..+.+.+.++++.|+.++..+.. ..+++.|+++|+|||.+. .+..+.+. ++++.|+.+
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~-~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~--~glp~Lv~L 363 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKT-PAILEASAGAIQNLCAGRWTYGRYIRSALRQE--KALSAIADL 363 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSH--HHHHHHHHG
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHccCCC-HHHHHHHHHHHHHHHcCCccccHHHHHHHHHc--CcHHHHHHH
Confidence 01112233456788999976543 589999999999998751 12234456 899999999
Q ss_pred HhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCCC-------CHhHHHHHHHHHHHhhcCCcchhHHHhh
Q 047123 424 IKRGNVLLQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECPK-------PVGLQEAATDAVLSLLTVRSNRKELVRD 495 (579)
Q Consensus 424 L~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~-------~~~v~~~a~~aL~~L~~~~~~~~~~~~~ 495 (579)
|.+++..++..|+++|+||+.++.++..|... ++.|+++|..++ +.+++..++.+|+||+..++.....+.+
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~ 443 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRE 443 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999999999877888888555 999999994432 5688999999999998765554445557
Q ss_pred cccHHHHHhhcCCC--chhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHH
Q 047123 496 EKSVMRLMQMLDPK--NEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQH 545 (579)
Q Consensus 496 ~~~i~~Lv~lL~~~--~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~ 545 (579)
.++|+.|+++|.++ .+. .+++|..+|.++..++. .|+.+...|+-+.
T Consensus 444 ~g~I~~Lv~LL~s~~~~~~-v~k~Aa~vL~nl~~~~e--lr~~~kk~G~~~~ 492 (584)
T 3l6x_A 444 TQGIEKLVLINKSGNRSEK-EVRAAALVLQTIWGYKE--LRKPLEKEGWKKS 492 (584)
T ss_dssp TTHHHHHHHHHTCSSSCHH-HHHHHHHHHHHHHTSHH--HHHHHHTTTCCGG
T ss_pred CCChHHHHHHHhCCCCChH-HHHHHHHHHHHHHcCHH--HHHHHHHcCCCHH
Confidence 99999999999886 444 89999999999999877 9999988776543
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=5e-36 Score=324.60 Aligned_cols=391 Identities=15% Similarity=0.184 Sum_probs=335.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhc-cChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH
Q 047123 162 LFIRDIFTRLQIGGVEFKKKALESLLQLLK-DDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR 240 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~-~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~ 240 (579)
..|+++|..++++|++.+..|+..++.+.+ +.......+++.|+||.||++|+.++++.+|..|+++|.||+..+++++
T Consensus 57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 358999999999999999999999998765 3334578899999999999999734568999999999999988789999
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHhcCCCH-----HHHHHHHHHHHH
Q 047123 241 KIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PENAWAISAYGGVSVLIEAFRSGTA-----LTQSHAVGAIRN 314 (579)
Q Consensus 241 ~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~~-----~~~~~a~~aL~n 314 (579)
..+++.|++|.|+++|.+++.++++.|+++|++|+.+ ++++..+.+.|+++.|+.++.+.+. .++..++++|.|
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 216 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999974 6788999999999999999987543 568899999999
Q ss_pred hhcChhhH-HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHH
Q 047123 315 IAAVEDIK-AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENA 393 (579)
Q Consensus 315 Ls~~~~~~-~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A 393 (579)
++.+.... ......|++|.|+.++.++++.++..++++|.+|+..++.....+.+.|+++.|+.++.+.+. .++..+
T Consensus 217 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~v~~~a 294 (510)
T 3ul1_B 217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL--PIVTPA 294 (510)
T ss_dssp HHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCH--HHHHHH
T ss_pred HhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCCh--hhhhHH
Confidence 99865433 333356789999999999999999999999999999887777888899999999999998776 899999
Q ss_pred HHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccCCCC
Q 047123 394 LLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMECPKP 468 (579)
Q Consensus 394 ~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~~ 468 (579)
+++|+|++.. .....+++. |+++.|+.+|.+.+..++..|+++|.||+ .+++.+..+.+. ++.|+.++ .+.+
T Consensus 295 l~aL~nl~~~~~~~~~~i~~~--g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL-~~~~ 371 (510)
T 3ul1_B 295 LRAIGNIVTGTDEQTQKVIDA--GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL-SKAD 371 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHT--TGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH-HSSC
T ss_pred HHHHHHhhcCCHHHHHHHhhc--cchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHH-cCCC
Confidence 9999999887 556778888 99999999999999999999999999999 677888888887 99999999 6778
Q ss_pred HhHHHHHHHHHHHhhcCCc-chhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhC-----CCChhHHHHHHHcCc
Q 047123 469 VGLQEAATDAVLSLLTVRS-NRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG-----GGSNGCRKRLVAAGA 542 (579)
Q Consensus 469 ~~v~~~a~~aL~~L~~~~~-~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~-----~~~~~~r~~i~~~g~ 542 (579)
.+++..|+.+|+|++.... .....+.+.|++++|+++|+..+++ ....++.+|.++.. ......+..|.+.|+
T Consensus 372 ~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~-i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~gg 450 (510)
T 3ul1_B 372 FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK-IIQVILDAISNIFQAAEKLGETEKLSIMIEECGG 450 (510)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHH-HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCc
Confidence 9999999999999987432 2333344689999999999998877 67777777777652 112235677889999
Q ss_pred hHHHHhhhccCCchHH
Q 047123 543 YQHLQKLAETEVPGAK 558 (579)
Q Consensus 543 ~~~L~~L~~~~~~~ak 558 (579)
+..|..|.+++++...
T Consensus 451 l~~ie~Lq~~~n~~i~ 466 (510)
T 3ul1_B 451 LDKIEALQRHENESVY 466 (510)
T ss_dssp HHHHHHGGGCSSHHHH
T ss_pred HHHHHHHHcCCCHHHH
Confidence 9999999988877653
No 3
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=5.4e-36 Score=319.59 Aligned_cols=362 Identities=14% Similarity=0.159 Sum_probs=310.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
.++.++..|++++++.+..|+.+|.+++..++..+..+.+.|+||.|+++|+ ++++.+|+.|+++|.+|+..+++++..
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR-SPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT-SSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4789999999999999999999999999888888889999999999999999 999999999999999999855999999
Q ss_pred HHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHh--------cCC--------CHHHH
Q 047123 243 VFEEGGLGPLLRILE-TGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAF--------RSG--------TALTQ 305 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~-~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll--------~~~--------~~~~~ 305 (579)
+++.|++++|+++|. ++++++++.++++|.+|+.+++++..+.+ |+++.|+.++ .++ ++.++
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 999999999999999 88999999999999999998999999999 9999999999 322 45677
Q ss_pred HHHHHHHHHhhcChhhHHHHHHc-CCHHHHHHHhcC------CCHHHHHHHHHHHHHHhcCC------------------
Q 047123 306 SHAVGAIRNIAAVEDIKAALAEE-GAVPVLVQSLTS------SSNLAQENAADCIATLAASG------------------ 360 (579)
Q Consensus 306 ~~a~~aL~nLs~~~~~~~~l~~~-g~v~~Lv~lL~~------~~~~v~~~a~~~L~~La~~~------------------ 360 (579)
..++++|+||+.+++++..+.+. |+++.|+.++.+ .+..+++.++.+|.|++...
T Consensus 161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 79999999999999999999997 999999999974 34568889999999987310
Q ss_pred --------------------------------hhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hh-
Q 047123 361 --------------------------------EYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DS- 405 (579)
Q Consensus 361 --------------------------------~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~- 405 (579)
+...+.+.+.|+++.|+.++..... +.+++.|+++|+||+.+ +.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~-~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK-DATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTTCSSSHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCC-HHHHHHHHHHHHHhccCcCcch
Confidence 0011234456778899999987654 58999999999999986 21
Q ss_pred --H-HHHH-hhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCCC-----CHhHHHHH
Q 047123 406 --A-ARIL-SSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECPK-----PVGLQEAA 475 (579)
Q Consensus 406 --~-~~l~-~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~-----~~~v~~~a 475 (579)
. +.++ +. |+++.|+++|.+++.+++..|+++|.||+.+++++..+.+. ++.|+++|...+ +.++...+
T Consensus 320 ~~~~~~~v~~~--~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~ 397 (457)
T 1xm9_A 320 SGMSQLIGLKE--KGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSA 397 (457)
T ss_dssp HHHHHHHHTTS--CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHc--CCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHH
Confidence 1 2233 56 89999999999999999999999999999888988888777 999999994432 24688899
Q ss_pred HHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCC-chhhhhHHHHHHHHHHhCCCC
Q 047123 476 TDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPK-NEALNKKFPVMVTAAVLGGGS 530 (579)
Q Consensus 476 ~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~~k~~av~~L~~L~~~~~ 530 (579)
+.+|.++....+.....+.+.||+++|++++.++ ++. +++.|..+|.++..++.
T Consensus 398 l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~-i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 398 CYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPK-AAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHH-HHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHH-HHHHHHHHHHHHHcchh
Confidence 9999999887777666777899999999999988 666 88999999999887654
No 4
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.6e-35 Score=328.55 Aligned_cols=382 Identities=13% Similarity=0.153 Sum_probs=325.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccCh-hhHHHHHhhC----cHHHHHHhhccCC--CHHHHHHHHHHHHHhhcc
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDD-KSAAVVAKEG----NVGYLISLLDFHH--QSSIREQAVLALSIIVSA 235 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~g----~v~~Lv~LL~~~~--~~~~~~~A~~aL~~La~~ 235 (579)
.++.|+.++++++...+..|+.+|..+..... +........| .++.|+++|. ++ ++++++.|+++|..|+.
T Consensus 331 gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~-~~~~d~~v~~~AveaLayLS~- 408 (810)
T 3now_A 331 GVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLI-KPGKDKDIRRWAADGLAYLTL- 408 (810)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHH-CSSCCSSHHHHHHHHHHHHTT-
T ss_pred CcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHhC-
Confidence 46889999999999999999999999975322 1111222233 4677888888 77 89999999999999999
Q ss_pred ChhhHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc------------------------------cH---
Q 047123 236 NDESRKIVFE-EGGLGPLLRILETGSMPLKEKAAIGVEAITTDPE------------------------------NA--- 281 (579)
Q Consensus 236 ~~~~~~~i~~-~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~------------------------------~~--- 281 (579)
+++.+..++. .|++++|+.+|++++..++..++++|.||+.+.+ ++
T Consensus 409 ~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~ 488 (810)
T 3now_A 409 DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRI 488 (810)
T ss_dssp SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHH
Confidence 8888888874 6999999999999999999999999999997432 12
Q ss_pred HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh
Q 047123 282 WAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGE 361 (579)
Q Consensus 282 ~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~ 361 (579)
..+++.|+++.|+.++.++++.+++.|+++|.|++.+++++..++++|++|+|+.++.++++..++.|+++|.+++.+..
T Consensus 489 ~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~ 568 (810)
T 3now_A 489 TVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN 568 (810)
T ss_dssp HHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999986432
Q ss_pred hhHHHH---HhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHH
Q 047123 362 YFRLLI---IQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSS 436 (579)
Q Consensus 362 ~~r~~l---~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~ 436 (579)
. ...+ ...|++++|++++.++.. ...+..|+++|.||+.. +.+..+++. |+++.|+.++.++++.+|..|+
T Consensus 569 p-~~~~~~~~~~~aIppLv~LL~~~~~-~l~~~eAl~AL~NLa~~~d~~~~~Ii~a--G~l~~Lv~LL~s~~~~Vq~~A~ 644 (810)
T 3now_A 569 P-EVSFSGQRSLDVIRPLLNLLQQDCT-ALENFESLMALTNLASMNESVRQRIIKE--QGVSKIEYYLMEDHLYLTRAAA 644 (810)
T ss_dssp H-HHHTTTHHHHHTHHHHHHTTSTTSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHT--THHHHHHHHHHSCCTTHHHHHH
T ss_pred h-hhhhcchhhhcHHHHHHHHhCCCCc-HHHHHHHHHHHHHHhcCCHHHHHHHHHc--CCHHHHHHHHcCCCHHHHHHHH
Confidence 2 1111 114689999999986533 34567899999999987 567889999 9999999999999999999999
Q ss_pred HHHHHhcCChhhHHHHHH-H--HHHHHHhccCCCCHhHHHHHHHHHHHhhc-CCcchhHHHhhcccHHHHHhhcCCCchh
Q 047123 437 SLLGNLSISDGNKRAVAS-C--MGSLIKLMECPKPVGLQEAATDAVLSLLT-VRSNRKELVRDEKSVMRLMQMLDPKNEA 512 (579)
Q Consensus 437 ~aL~~L~~~~~~~~~i~~-~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~-~~~~~~~~~~~~~~i~~Lv~lL~~~~~~ 512 (579)
++|+||+.+++.+..+.+ . ++.|+.++ .+++..+|..|+++|+||+. .....+.++...+++++|+++|.+++.+
T Consensus 645 ~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL-~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~ 723 (810)
T 3now_A 645 QCLCNLVMSEDVIKMFEGNNDRVKFLALLC-EDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPA 723 (810)
T ss_dssp HHHHHHTTSHHHHHHHHSSSSHHHHHHHGG-GCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHH
T ss_pred HHHHHHhCChHHHHHHHhccCcHHHHHHHh-cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHH
Confidence 999999988888888775 3 99999999 77889999999999999998 4556666774489999999999998888
Q ss_pred hhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhccC
Q 047123 513 LNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETE 553 (579)
Q Consensus 513 ~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~ 553 (579)
.++.+++++.+++.+. .++++.|+++|++++|++|++..
T Consensus 724 -vq~~A~~aL~NL~~~s-~e~~~~l~e~G~i~~L~~LL~~~ 762 (810)
T 3now_A 724 -VQHRGIVIILNMINAG-EEIAKKLFETDIMELLSGLGQLP 762 (810)
T ss_dssp -HHHHHHHHHHHHHTTC-HHHHHHHHTSTHHHHHTTSCCCT
T ss_pred -HHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHhCc
Confidence 8999999999998753 45899999999999999998765
No 5
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=9.6e-35 Score=316.11 Aligned_cols=390 Identities=15% Similarity=0.181 Sum_probs=335.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhc-cChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLK-DDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK 241 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~-~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~ 241 (579)
.++.++..+++++++.+..|+..++.+.+ +.......+++.|+||.|+++|+.+.++.+|..|+++|.+|+..+++.+.
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 58899999999999999999999998754 44455788899999999999997355699999999999999986788889
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCH-----HHHHHHHHHHHHh
Q 047123 242 IVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTA-----LTQSHAVGAIRNI 315 (579)
Q Consensus 242 ~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~-----~~~~~a~~aL~nL 315 (579)
.+++.|++|+|+.+|.+++.++++.|+++|.+|+. +++++..+.+.|+++.|+.++...+. .++..++++|.|+
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999996 56889999999999999999986543 5688999999999
Q ss_pred hcChhhH-HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHH
Q 047123 316 AAVEDIK-AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENAL 394 (579)
Q Consensus 316 s~~~~~~-~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~ 394 (579)
+.+.... ......|++|.|+.++.++++.++..++++|.+++..++.....+.+.|+++.|+.++.+.+. .++..++
T Consensus 237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~--~v~~~a~ 314 (529)
T 3tpo_A 237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL--PIVTPAL 314 (529)
T ss_dssp HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCH--HHHHHHH
T ss_pred HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCCh--hHHHHHH
Confidence 9865433 333456789999999999999999999999999999888878888899999999999988775 8999999
Q ss_pred HHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccCCCCH
Q 047123 395 LAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMECPKPV 469 (579)
Q Consensus 395 ~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~~~ 469 (579)
++|+|++.+ .....++.. |+++.|+.+|.+.++.++..|+++|.||+ .+++.+..+.+. ++.|+.++ .+.+.
T Consensus 315 ~aL~nl~~~~~~~~~~i~~~--g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL-~~~~~ 391 (529)
T 3tpo_A 315 RAIGNIVTGTDEQTQKVIDA--GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL-SKADF 391 (529)
T ss_dssp HHHHHHTTSCHHHHHHHHHT--TGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHH-HSSCH
T ss_pred HHHHHHHccchHHHHHHhhc--ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHh-cCCCH
Confidence 999999987 556778888 99999999999999999999999999999 677778888877 99999999 77789
Q ss_pred hHHHHHHHHHHHhhcCC-cchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhC-----CCChhHHHHHHHcCch
Q 047123 470 GLQEAATDAVLSLLTVR-SNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG-----GGSNGCRKRLVAAGAY 543 (579)
Q Consensus 470 ~v~~~a~~aL~~L~~~~-~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~-----~~~~~~r~~i~~~g~~ 543 (579)
+++..|+.+|+|++... ......+.+.|+|++|+++|+..+++ ....++.+|.++.. ......+..|.+.|++
T Consensus 392 ~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~-i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl 470 (529)
T 3tpo_A 392 KTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK-IIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL 470 (529)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHH-HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcH
Confidence 99999999999998643 23333444699999999999998877 66777777777652 1122346678899999
Q ss_pred HHHHhhhccCCchHH
Q 047123 544 QHLQKLAETEVPGAK 558 (579)
Q Consensus 544 ~~L~~L~~~~~~~ak 558 (579)
..|..|.+++++...
T Consensus 471 ~~ie~Lq~~~n~~i~ 485 (529)
T 3tpo_A 471 DKIEALQRHENESVY 485 (529)
T ss_dssp HHHTGGGGCSSHHHH
T ss_pred HHHHHHHcCCCHHHH
Confidence 999999998887654
No 6
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.1e-34 Score=311.91 Aligned_cols=365 Identities=16% Similarity=0.207 Sum_probs=301.6
Q ss_pred hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC--CCc
Q 047123 202 KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT--DPE 279 (579)
Q Consensus 202 ~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~--~~~ 279 (579)
..+.++.||++|. ++++.+|..|+.+|.+++..+++++..+++.|+||+|+++|++++.++++.|+++|.+|+. +++
T Consensus 46 ~~~~i~~LV~~L~-s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 46 RQPELPEVIAMLG-FRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred ccccHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 5678999999999 9999999999999999997689999999999999999999999999999999999999997 489
Q ss_pred cHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhc------------------C
Q 047123 280 NAWAISAYGGVSVLIEAFRS-GTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLT------------------S 340 (579)
Q Consensus 280 ~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~------------------~ 340 (579)
++..|++.|+|+.|+.+|.+ .+..+++.++++|+||+.+++++..+++ ++++.|++++. .
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 99999999999999999997 5789999999999999999999999996 57999999871 2
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHh-cCcHHHHHHhhccC----CCChHHHHHHHHHHHHcccc-hhH--------
Q 047123 341 SSNLAQENAADCIATLAASGEYFRLLIIQ-ERGLQRLMHLIQDS----TSSIVTVENALLAISSLSLS-DSA-------- 406 (579)
Q Consensus 341 ~~~~v~~~a~~~L~~La~~~~~~r~~l~~-~g~i~~Lv~ll~~~----~~~~~~~~~A~~aL~~L~~~-~~~-------- 406 (579)
.++.++++++++|.||+..+++.|..+++ .|+++.|+.++++. ..+...+++|+++|+||+.. ...
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 35799999999999999988888999988 56678999998752 22348999999999999986 110
Q ss_pred ------------------HHHHhhcCcHHHHHHHHHh-cCCHHHHHHHHHHHHHhcCC-----hhhHHHHHHH--HHHHH
Q 047123 407 ------------------ARILSSTTSFIIQLGEFIK-RGNVLLQQVSSSLLGNLSIS-----DGNKRAVASC--MGSLI 460 (579)
Q Consensus 407 ------------------~~l~~~~~g~i~~L~~lL~-~~~~~v~~~A~~aL~~L~~~-----~~~~~~i~~~--v~~Lv 460 (579)
..+... ++++.|+.+|. +.++.+++.|+++|.||+.+ ..++..+.+. ++.|+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~--~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv 361 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQP--EVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA 361 (584)
T ss_dssp ------------CCCCGGGGGGSH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred hhcccccccccccCchhHHHHhcc--cHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence 011222 56778899995 56899999999999999832 2344455444 99999
Q ss_pred HhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCch-------hhhhHHHHHHHHHHhCCCChhH
Q 047123 461 KLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNE-------ALNKKFPVMVTAAVLGGGSNGC 533 (579)
Q Consensus 461 ~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~-------~~~k~~av~~L~~L~~~~~~~~ 533 (579)
++| .+.+..++..|+.+|+||+.+..++..+ +.++++.||++|...+. ......++.+|.+++... .+.
T Consensus 362 ~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~~I--~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~-~~~ 437 (584)
T 3l6x_A 362 DLL-TNEHERVVKAASGALRNLAVDARNKELI--GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAEN-LEA 437 (584)
T ss_dssp HGG-GCSCHHHHHHHHHHHHHHHTTCSCHHHH--HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTC-HHH
T ss_pred HHH-cCCCHHHHHHHHHHHHHHhCChhHHHHH--HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCC-HHH
Confidence 999 7888999999999999999988776644 47899999999987632 125667788888887543 348
Q ss_pred HHHHHHcCchHHHHhhhccC--CchHH----HHHHHHh-cCcchhhhc
Q 047123 534 RKRLVAAGAYQHLQKLAETE--VPGAK----KVLQRLA-GNRLKNIFS 574 (579)
Q Consensus 534 r~~i~~~g~~~~L~~L~~~~--~~~ak----~~~~~l~-~~~~~~~~~ 574 (579)
++.|+++|+++.|++|++++ .+.++ .++.-++ ...++++|.
T Consensus 438 ~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~k 485 (584)
T 3l6x_A 438 AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLE 485 (584)
T ss_dssp HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 99999999999999999986 44332 3344444 556666663
No 7
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=3.3e-34 Score=312.06 Aligned_cols=392 Identities=14% Similarity=0.174 Sum_probs=342.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhccCh-hhHHHHHhhCcHHHHHHhhccCCC-HHHHHHHHHHHHHhhccChh
Q 047123 161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDD-KSAAVVAKEGNVGYLISLLDFHHQ-SSIREQAVLALSIIVSANDE 238 (579)
Q Consensus 161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~g~v~~Lv~LL~~~~~-~~~~~~A~~aL~~La~~~~~ 238 (579)
...++.++..|++++++.+..|+..|..++...+ .....++..|++|.|+++|. +++ +.+|..|+++|.+++..+++
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLT-REDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHT-CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHhCCCHH
Confidence 3458999999999999999999999999977554 67788899999999999999 876 99999999999999996689
Q ss_pred hHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHh-cCCCHHHHHHHHHHHHHhh
Q 047123 239 SRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAF-RSGTALTQSHAVGAIRNIA 316 (579)
Q Consensus 239 ~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll-~~~~~~~~~~a~~aL~nLs 316 (579)
++..+++.|++++|+.+|.++++.+++.|+++|.+|+. +++++..+.+.|+++.|+.++ .+.++.++..++++|.+|+
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999995 467788999999999999999 5678999999999999999
Q ss_pred cChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHH
Q 047123 317 AVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLA 396 (579)
Q Consensus 317 ~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~a 396 (579)
............|+++.|+.++.++++.++..++++|.+++..++.....+.+.|+++.|+.++.+.+. .++..|+++
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~--~v~~~a~~~ 309 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP--SVLIPALRT 309 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCH--HHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCCh--hHHHHHHHH
Confidence 875444445568999999999999999999999999999998877766788899999999999988765 899999999
Q ss_pred HHHcccc--hhHHHHHhhcCcHHHHHHHHHhcC-CHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccCCCCHh
Q 047123 397 ISSLSLS--DSAARILSSTTSFIIQLGEFIKRG-NVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMECPKPVG 470 (579)
Q Consensus 397 L~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~-~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~~~~ 470 (579)
|+||+.+ .....++.. |+++.|+.+|.++ ++.++..|+++|.||+ .+++....+.+. ++.|++++ ...+..
T Consensus 310 L~nl~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~ 386 (528)
T 4b8j_A 310 VGNIVTGDDAQTQCIIDH--QALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLL-QTAEFD 386 (528)
T ss_dssp HHHHTTSCHHHHHHHHTT--THHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHH-HHSCHH
T ss_pred HHHHHcCCHHHHHHHHHh--hhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHH-hcCCHH
Confidence 9999986 556678888 9999999999999 9999999999999999 677777777776 99999999 566899
Q ss_pred HHHHHHHHHHHhhcC-CcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC----------hhHHHHHHH
Q 047123 471 LQEAATDAVLSLLTV-RSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS----------NGCRKRLVA 539 (579)
Q Consensus 471 v~~~a~~aL~~L~~~-~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~----------~~~r~~i~~ 539 (579)
++..|+.+|++++.. .+.....+.+.++++.|+++|...++. .+..++.+|.++..... ...+..+.+
T Consensus 387 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~-v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~ 465 (528)
T 4b8j_A 387 IKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIR-IVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDE 465 (528)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHH-HHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHH
Confidence 999999999999976 334444444689999999999998877 78888888988874321 125788889
Q ss_pred cCchHHHHhhhccCCchHHH
Q 047123 540 AGAYQHLQKLAETEVPGAKK 559 (579)
Q Consensus 540 ~g~~~~L~~L~~~~~~~ak~ 559 (579)
.|++..|..|.+++++..++
T Consensus 466 ~~~~~~l~~L~~~~~~~v~~ 485 (528)
T 4b8j_A 466 AEGLEKIENLQSHDNNEIYE 485 (528)
T ss_dssp TTHHHHHHHGGGCSSHHHHH
T ss_pred CCcHHHHHHHHcCCCHHHHH
Confidence 99999999999888876543
No 8
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=3.8e-35 Score=325.67 Aligned_cols=391 Identities=18% Similarity=0.203 Sum_probs=332.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccCh-hhH
Q 047123 162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAND-ESR 240 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~-~~~ 240 (579)
.+++.++.++.+.+...+..|++++...+.+ +.++..+.+.|+ ++|+.+++ +++..+|..|+.+|++++.+.. +..
T Consensus 290 G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~~gv-~~L~~Ll~-s~~~~vr~~Al~~L~kl~s~~~~d~~ 366 (810)
T 3now_A 290 GILQMILAMATTDDELQQRVACECLIAASSK-KDKAKALCEQGV-DILKRLYH-SKNDGIRVRALVGLCKLGSYGGQDAA 366 (810)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHHHHH-HHHHHHTT-CSCHHHHHHHHHHHHHHHTTTTTTTS
T ss_pred chHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHHcCc-HHHHHHHc-CCCHHHHHHHHHHHHHhccccccCcc
Confidence 4689999999999999999999999997754 889999999875 99999999 9999999999999999986222 233
Q ss_pred HHHHhcCC----HHHHHHHHccC--CHHHHHHHHHHHHHhcCCCccHHHHHh-cCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 047123 241 KIVFEEGG----LGPLLRILETG--SMPLKEKAAIGVEAITTDPENAWAISA-YGGVSVLIEAFRSGTALTQSHAVGAIR 313 (579)
Q Consensus 241 ~~i~~~g~----l~~Lv~lL~~~--~~~v~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~a~~aL~ 313 (579)
...+++|. ++.|+++|.++ +.++++.|+++|.+|+.+++.++.++. .|+++.|+.+++++++.++..++++|.
T Consensus 367 ~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~ 446 (810)
T 3now_A 367 IRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFV 446 (810)
T ss_dssp CCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34444554 55677888877 889999999999999999999999985 799999999999999999999999999
Q ss_pred HhhcChh------------------------------hH---HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 047123 314 NIAAVED------------------------------IK---AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASG 360 (579)
Q Consensus 314 nLs~~~~------------------------------~~---~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~ 360 (579)
|++...+ ++ ..+++.|++|.|+.++.++++.+++.|+++|.|++. +
T Consensus 447 NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d 525 (810)
T 3now_A 447 NLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-L 525 (810)
T ss_dssp HHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-S
T ss_pred HHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-C
Confidence 9997431 23 677899999999999999999999999999999996 4
Q ss_pred hhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHH----HhhcCcHHHHHHHHHhcC-CHHHHHHH
Q 047123 361 EYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARI----LSSTTSFIIQLGEFIKRG-NVLLQQVS 435 (579)
Q Consensus 361 ~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l----~~~~~g~i~~L~~lL~~~-~~~v~~~A 435 (579)
+..|..+++.|+++.|+.++.+++. ..++.|+++|.||+...+.... ... |++++|+.+|.++ +...+..|
T Consensus 526 ~~~r~~Vv~~Gaip~Lv~LL~s~~~--~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~--~aIppLv~LL~~~~~~l~~~eA 601 (810)
T 3now_A 526 KELRGKVVQEGGVKALLRMALEGTE--KGKRHATQALARIGITINPEVSFSGQRSL--DVIRPLLNLLQQDCTALENFES 601 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSSCH--HHHHHHHHHHHHHHHHSCHHHHTTTHHHH--HTHHHHHHTTSTTSCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHccCCH--HHHHHHHHHHHHHhcCCChhhhhcchhhh--cHHHHHHHHhCCCCcHHHHHHH
Confidence 5689999999999999999998876 8999999999999987222221 124 7899999999866 44556789
Q ss_pred HHHHHHhc-CChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchh
Q 047123 436 SSLLGNLS-ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEA 512 (579)
Q Consensus 436 ~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~ 512 (579)
+++|.||+ .+++++..+.++ ++.|+.++ .+.+..++..|+++|+||+..++.+..++...++++.|+.++++.+..
T Consensus 602 l~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL-~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~ 680 (810)
T 3now_A 602 LMALTNLASMNESVRQRIIKEQGVSKIEYYL-MEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEE 680 (810)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH-HSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHH
T ss_pred HHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHH
Confidence 99999999 567888888887 99999999 677899999999999999998888888873368899999999988766
Q ss_pred hhhHHHHHHHHHHhC-CCChhHHHHHHH-cCchHHHHhhhccCCchHH-HHHHHH
Q 047123 513 LNKKFPVMVTAAVLG-GGSNGCRKRLVA-AGAYQHLQKLAETEVPGAK-KVLQRL 564 (579)
Q Consensus 513 ~~k~~av~~L~~L~~-~~~~~~r~~i~~-~g~~~~L~~L~~~~~~~ak-~~~~~l 564 (579)
.++.|+++|.+++. ++. ..+.+++ .|+++.|++|+.++++..+ .++..+
T Consensus 681 -vq~~Aa~ALanLt~~s~~--~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL 732 (810)
T 3now_A 681 -TATACAGALAIITSVSVK--CCEKILAIASWLDILHTLIANPSPAVQHRGIVII 732 (810)
T ss_dssp -HHHHHHHHHHHHHHHCHH--HHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCCHH--HHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 89999999999998 444 7788888 9999999999999887654 444443
No 9
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=4.4e-34 Score=300.95 Aligned_cols=359 Identities=17% Similarity=0.183 Sum_probs=289.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccC------------CCHHHHHHHHHHH
Q 047123 162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFH------------HQSSIREQAVLAL 229 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~------------~~~~~~~~A~~aL 229 (579)
..++.|+..+.+.+.+. ..+.|..+.. ++..+..+++.|++|.|+++|+ . +++++|..|+++|
T Consensus 32 ~~~~~l~~~~~~~~~~~---~~~~ll~~~~-~~~~~~~~~~~g~~p~lv~~l~-~~~~~~~~~~~~~~~~~~~~~a~~al 106 (458)
T 3nmz_A 32 EMVYSLLSMLGTHDKDD---MSRTLLAMSS-SQDSCISMRQSGCLPLLIQLLH-GNDKDSVLLGNSRGSKEARARASAAL 106 (458)
T ss_dssp -------------CCHH---HHHHHHHHHS-STTHHHHHHHHTCHHHHHHHHT-CTTCCSCC---CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHH---HHHHHHHHHc-CCcHHHHHHHCCCHHHHHHHHh-cccccccccccccCCHHHHHHHHHHH
Confidence 34778888888777663 5666666654 5567788999999999999998 5 3379999999999
Q ss_pred HHhhccChhhHHHHHhcCCH----------HHHHHHHccCC--HH-----HHH-------HHHHHHHHhcCCCccHHHHH
Q 047123 230 SIIVSANDESRKIVFEEGGL----------GPLLRILETGS--MP-----LKE-------KAAIGVEAITTDPENAWAIS 285 (579)
Q Consensus 230 ~~La~~~~~~~~~i~~~g~l----------~~Lv~lL~~~~--~~-----v~~-------~aa~~L~~Ls~~~~~~~~i~ 285 (579)
.||+...++......+.|++ +.+++++.+.. .+ +++ .|+++|.|++.++++|..+.
T Consensus 107 ~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~ 186 (458)
T 3nmz_A 107 HNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMN 186 (458)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999888888887777777 66777777642 22 444 99999999999999999999
Q ss_pred hcCcHHHHHHHhcC-----------CCHHHHHHHHHHHHHhhcChh-hHHHHHH-cCCHHHHHHHhcCCCHHHHHHHHHH
Q 047123 286 AYGGVSVLIEAFRS-----------GTALTQSHAVGAIRNIAAVED-IKAALAE-EGAVPVLVQSLTSSSNLAQENAADC 352 (579)
Q Consensus 286 ~~g~i~~Lv~ll~~-----------~~~~~~~~a~~aL~nLs~~~~-~~~~l~~-~g~v~~Lv~lL~~~~~~v~~~a~~~ 352 (579)
+.|++++|+.++.. .++.+++.|+++|.||+..++ ++..+.. .|+||.|+.+|.++++++++.++++
T Consensus 187 ~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~a 266 (458)
T 3nmz_A 187 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV 266 (458)
T ss_dssp HTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999952 245789999999999998654 6666654 5569999999999999999999999
Q ss_pred HHHHhcC-ChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHccc-c-hhHHHHH-hhcCcHHHHHHHHHhcCC
Q 047123 353 IATLAAS-GEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSL-S-DSAARIL-SSTTSFIIQLGEFIKRGN 428 (579)
Q Consensus 353 L~~La~~-~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~-~-~~~~~l~-~~~~g~i~~L~~lL~~~~ 428 (579)
|.||+.. ++..|..+.+.|+++.|++++....+ ..+++.|+++||||+. . +++..+. .. |+++.|+.+|.+++
T Consensus 267 L~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~-~~v~~~A~~aL~nLs~~~~~nk~~I~~~~--Gal~~Lv~LL~~~~ 343 (458)
T 3nmz_A 267 LRNLSWRADVNSKKTLREVGSVKALMECALEVKK-ESTLKSVLSALWNLSAHCTENKADICAVD--GALAFLVGTLTYRS 343 (458)
T ss_dssp HHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCS-HHHHHHHHHHHHHHHHHCHHHHHHHHHST--THHHHHHHHTTCCC
T ss_pred HHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCC-HHHHHHHHHHHHHHccCCHHHHHHHHHhc--CcHHHHHHHhcCCC
Confidence 9999985 56789999999999999998654332 4899999999999998 4 5566666 67 99999999998775
Q ss_pred H----HHHHHHHHHHHHhc----CChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhccc
Q 047123 429 V----LLQQVSSSLLGNLS----ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKS 498 (579)
Q Consensus 429 ~----~v~~~A~~aL~~L~----~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~ 498 (579)
. ++++.|+++|+||+ .++++++.+.+. ++.|+.+| .+.+..+++.|+.+|+||+...+..+..+.+.|+
T Consensus 344 ~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL-~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~ 422 (458)
T 3nmz_A 344 QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGA 422 (458)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHS-SCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTH
T ss_pred CcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHH-cCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 4 59999999999999 488999999888 99999999 7778999999999999999654444444457999
Q ss_pred HHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123 499 VMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS 530 (579)
Q Consensus 499 i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~ 530 (579)
|++|+++|.+++.. .++.++++|.+|+.+.+
T Consensus 423 I~~Lv~LL~s~~~~-v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 423 VSMLKNLIHSKHKM-IAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHTTTTCSSHH-HHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHhCCCHH-HHHHHHHHHHHHHcCCH
Confidence 99999999988777 89999999999998765
No 10
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=6.5e-33 Score=301.99 Aligned_cols=390 Identities=16% Similarity=0.173 Sum_probs=340.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhccC-hhhHHHHHhhCcHHHHHHhhccCC-CHHHHHHHHHHHHHhhccChh
Q 047123 161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKDD-DKSAAVVAKEGNVGYLISLLDFHH-QSSIREQAVLALSIIVSANDE 238 (579)
Q Consensus 161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~LL~~~~-~~~~~~~A~~aL~~La~~~~~ 238 (579)
...++.++..|++++++.+..|+..|..++... ......+++.|++|.|+++|. ++ ++.+|..|+++|.+++..+++
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~-~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMR-ENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTS-TTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHhCCCHH
Confidence 346899999999999999999999999997643 455677889999999999999 87 899999999999999986778
Q ss_pred hHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 047123 239 SRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA 317 (579)
Q Consensus 239 ~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~ 317 (579)
.+..++..|+++.|+++|.++++.+++.|+++|.+|+.+ ++++..+...|+++.|+.++.+.++.++..++++|.+|+.
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 899999999999999999999999999999999999975 5788888999999999999999999999999999999998
Q ss_pred Ch-hhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHH
Q 047123 318 VE-DIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLA 396 (579)
Q Consensus 318 ~~-~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~a 396 (579)
+. .........++++.|+.++.++++.++..++++|.+++...+.....+.+.|+++.|+.++.+.+. .++..|+++
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~--~v~~~a~~~ 322 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST--LVQTPALRA 322 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCH--HHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCCh--hhHHHHHHH
Confidence 64 444456678999999999999999999999999999998877777888889999999999987654 899999999
Q ss_pred HHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccCCCCHhH
Q 047123 397 ISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMECPKPVGL 471 (579)
Q Consensus 397 L~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v 471 (579)
|.+++.+ .....++.. |+++.|+.+|.+++..++..|+++|.+|+ .+++..+.+.+. ++.|+++| ...+..+
T Consensus 323 L~~l~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v 399 (530)
T 1wa5_B 323 VGNIVTGNDLQTQVVINA--GVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLL-EVAEYKT 399 (530)
T ss_dssp HHHHTTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHH-HHSCHHH
T ss_pred HHHHHcCCHHHHHHHHHc--chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-hcCCHHH
Confidence 9999986 456667788 99999999999999999999999999999 677777777766 99999999 6678999
Q ss_pred HHHHHHHHHHhhcCC----cchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC----------hhHHHHH
Q 047123 472 QEAATDAVLSLLTVR----SNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS----------NGCRKRL 537 (579)
Q Consensus 472 ~~~a~~aL~~L~~~~----~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~----------~~~r~~i 537 (579)
+..|+.+|++++... ...+.++ +.++++.|+++|...++. .+..++.+|.++..... ...+..+
T Consensus 400 ~~~a~~aL~~l~~~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~-v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l 477 (530)
T 1wa5_B 400 KKEACWAISNASSGGLQRPDIIRYLV-SQGCIKPLCDLLEIADNR-IIEVTLDALENILKMGEADKEARGLNINENADFI 477 (530)
T ss_dssp HHHHHHHHHHHHHHTTTCTHHHHHHH-HTTCHHHHHHHTTTCCHH-HHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHH-HCCCHHHHHHHHhCCCHH-HHHHHHHHHHHHHHhhhhhhhcccccccHHHHHH
Confidence 999999999998753 3445555 589999999999988776 78888888888875321 2256788
Q ss_pred HHcCchHHHHhhhccCCchHH
Q 047123 538 VAAGAYQHLQKLAETEVPGAK 558 (579)
Q Consensus 538 ~~~g~~~~L~~L~~~~~~~ak 558 (579)
.+.|+++.|..|.++++++.+
T Consensus 478 ~~~g~~~~L~~L~~~~~~~v~ 498 (530)
T 1wa5_B 478 EKAGGMEKIFNCQQNENDKIY 498 (530)
T ss_dssp HHTTHHHHHHGGGGCSCHHHH
T ss_pred HHcCcHHHHHHHHcCCCHHHH
Confidence 999999999999998887653
No 11
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=6.9e-33 Score=299.92 Aligned_cols=360 Identities=15% Similarity=0.195 Sum_probs=316.5
Q ss_pred HHHHHHHHhcc-CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123 163 FIRDIFTRLQI-GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK 241 (579)
Q Consensus 163 ~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~ 241 (579)
.|+.|+.+|+. ++++.+..|+++|.++++.++++.+.+++.|+||.|+++|+ +++.++++.|+++|++|+.++++++.
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~-s~~~~v~e~A~~aL~nLa~d~~~~r~ 179 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGDGSAFRD 179 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999975 56899999999999999999999999999999999999999 99999999999999999996789999
Q ss_pred HHHhcCCHHHHHHHHccC-----CHHHHHHHHHHHHHhcCCCccHH-HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 047123 242 IVFEEGGLGPLLRILETG-----SMPLKEKAAIGVEAITTDPENAW-AISAYGGVSVLIEAFRSGTALTQSHAVGAIRNI 315 (579)
Q Consensus 242 ~i~~~g~l~~Lv~lL~~~-----~~~v~~~aa~~L~~Ls~~~~~~~-~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL 315 (579)
.+.+.|++++|+.+|... ...+.+.++++|.+++.+..... .....++++.|+.++.++++.++..++++|.+|
T Consensus 180 ~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L 259 (510)
T 3ul1_B 180 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 259 (510)
T ss_dssp HHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999999875 35678899999999997654333 333467899999999999999999999999999
Q ss_pred hcChh-hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHH
Q 047123 316 AAVED-IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENAL 394 (579)
Q Consensus 316 s~~~~-~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~ 394 (579)
+..+. ....+.+.|+++.|+.++.+.+..++..++.+|+|++..++..+..+.+.|+++.|+.++.+.+. .+++.|+
T Consensus 260 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~--~v~~~A~ 337 (510)
T 3ul1_B 260 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT--NIQKEAT 337 (510)
T ss_dssp TSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSH--HHHHHHH
T ss_pred hhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCH--HHHHHHH
Confidence 98654 45566799999999999999999999999999999999888888999999999999999987765 8999999
Q ss_pred HHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccCCCC
Q 047123 395 LAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMECPKP 468 (579)
Q Consensus 395 ~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~~~~ 468 (579)
++|.||+.+ .....+++. |+++.|+.++.+++.++|..|+++|.|++ .+++....+.+. ++.|+++| .+.+
T Consensus 338 ~aL~nl~a~~~~~~~~v~~~--g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL-~~~d 414 (510)
T 3ul1_B 338 WTMSNITAGRQDQIQQVVNH--GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKD 414 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHT--THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGG-GCSC
T ss_pred HHHHHHHcCcHHHHHHHHhc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHh-cCCC
Confidence 999999987 667778888 99999999999999999999999999999 577888888888 99999999 7888
Q ss_pred HhHHHHHHHHHHHhhcCC------cchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCC
Q 047123 469 VGLQEAATDAVLSLLTVR------SNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGG 529 (579)
Q Consensus 469 ~~v~~~a~~aL~~L~~~~------~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~ 529 (579)
.+++..++.+|.|+.... .....++.+.||+..|-.+..+.+.+ +.+.|..++-+....+
T Consensus 415 ~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~-i~~~A~~iie~yf~~~ 480 (510)
T 3ul1_B 415 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES-VYKASLNLIEKYFSVE 480 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHH-HHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHH-HHHHHHHHHHHHCCCc
Confidence 999999999999997531 22445666789999999888877777 7888888887776543
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.6e-32 Score=298.56 Aligned_cols=360 Identities=15% Similarity=0.196 Sum_probs=317.3
Q ss_pred HHHHHHHHHhcc-CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH
Q 047123 162 LFIRDIFTRLQI-GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR 240 (579)
Q Consensus 162 ~~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~ 240 (579)
..|+.|+..|+. .+++.+..|+++|.+++..++.....+++.|+||.|+.+|. ++++.+++.|+++|++|+.++++++
T Consensus 119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~-s~~~~v~e~A~~aL~nLa~~~~~~r 197 (529)
T 3tpo_A 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGAGSAFR 197 (529)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhccCHHHH
Confidence 368999999975 56899999999999999999999999999999999999999 9999999999999999998778999
Q ss_pred HHHHhcCCHHHHHHHHccC-----CHHHHHHHHHHHHHhcCCCccHH-HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Q 047123 241 KIVFEEGGLGPLLRILETG-----SMPLKEKAAIGVEAITTDPENAW-AISAYGGVSVLIEAFRSGTALTQSHAVGAIRN 314 (579)
Q Consensus 241 ~~i~~~g~l~~Lv~lL~~~-----~~~v~~~aa~~L~~Ls~~~~~~~-~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~n 314 (579)
..+++.|++++|+.+|..+ ...+...++++|.+++.+..... .....++++.|+.++.++++.++..++++|.+
T Consensus 198 ~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~ 277 (529)
T 3tpo_A 198 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 277 (529)
T ss_dssp HHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 9999999999999999865 35678899999999997654333 33346789999999999999999999999999
Q ss_pred hhcChh-hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHH
Q 047123 315 IAAVED-IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENA 393 (579)
Q Consensus 315 Ls~~~~-~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A 393 (579)
++..++ ....+++.|+++.|+.++.+.+..++..++.+|+|++.+++..+..+.+.|+++.|+.++.+.+. .++..|
T Consensus 278 l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~--~i~~~a 355 (529)
T 3tpo_A 278 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT--NIQKEA 355 (529)
T ss_dssp HHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSH--HHHHHH
T ss_pred hhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCH--HHHHHH
Confidence 998654 45667799999999999999999999999999999999888888999999999999999987765 899999
Q ss_pred HHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccCCC
Q 047123 394 LLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMECPK 467 (579)
Q Consensus 394 ~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~~~ 467 (579)
+++|.||+.+ .....+++. |+++.|+.++.+++.+++..|+++|+|++ .+++....+.+. ++.|+++| .+.
T Consensus 356 ~~aL~nl~~~~~~~~~~v~~~--g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL-~~~ 432 (529)
T 3tpo_A 356 TWTMSNITAGRQDQIQQVVNH--GLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAK 432 (529)
T ss_dssp HHHHHHHHTSCHHHHHHHHHT--THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGG-GCS
T ss_pred HHHHHHHhcccHHHHHHHHhc--CcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHh-cCC
Confidence 9999999987 567778888 99999999999999999999999999999 577888888888 99999999 788
Q ss_pred CHhHHHHHHHHHHHhhcC------CcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCC
Q 047123 468 PVGLQEAATDAVLSLLTV------RSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGG 528 (579)
Q Consensus 468 ~~~v~~~a~~aL~~L~~~------~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~ 528 (579)
+.+++..++.+|.++... ......++.+.||+..|..+..+.+.+ +.+.|..++-+....
T Consensus 433 d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~-i~~~A~~iie~yf~~ 498 (529)
T 3tpo_A 433 DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES-VYKASLNLIEKYFSV 498 (529)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHH-HHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHH-HHHHHHHHHHHHCCC
Confidence 999999999999999742 122445666889999999998887777 788888888776543
No 13
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=6.6e-33 Score=301.35 Aligned_cols=386 Identities=18% Similarity=0.191 Sum_probs=338.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
.++.|+.+|++++++.+..|+.+|.+++.+++..+..+.+.|+++.|+++|+ ++++.++..++.+|.+++..+++++..
T Consensus 102 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~~~~~L~~la~~~~~~~~~ 180 (529)
T 1jdh_A 102 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLI 180 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHh-cCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5899999999999999999999999999988888889999999999999999 999999999999999999867899999
Q ss_pred HHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhh
Q 047123 243 VFEEGGLGPLLRILETG-SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDI 321 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~-~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~ 321 (579)
+.+.|+++.|+++|+++ +...+..++.+|.+|+.+++++..+.+.|+++.|+.++.++++.++..++++|.|++.....
T Consensus 181 i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 260 (529)
T 1jdh_A 181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 260 (529)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChh
Confidence 99999999999999987 45677888999999999999999999999999999999999999999999999999985432
Q ss_pred HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcc
Q 047123 322 KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLS 401 (579)
Q Consensus 322 ~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~ 401 (579)
.. ...|+++.|++++.++++.++..++++|.+++..++..+..+.+.|+++.|++++...+.+..+++.|+++|+||+
T Consensus 261 ~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~ 338 (529)
T 1jdh_A 261 QE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 338 (529)
T ss_dssp CS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred hH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 21 2247899999999999999999999999999998877899999999999999999875433589999999999999
Q ss_pred cc--h---hHHHHHhhcCcHHHHHHHHHhcCC-HHHHHHHHHHHHHhcCChhhHHHHHHH--HHHHHHhccCCCCHh---
Q 047123 402 LS--D---SAARILSSTTSFIIQLGEFIKRGN-VLLQQVSSSLLGNLSISDGNKRAVASC--MGSLIKLMECPKPVG--- 470 (579)
Q Consensus 402 ~~--~---~~~~l~~~~~g~i~~L~~lL~~~~-~~v~~~A~~aL~~L~~~~~~~~~i~~~--v~~Lv~lL~~~~~~~--- 470 (579)
.. + .+..+... |+++.|+.+|.+.+ ..++..++++|+|++.+++.+..+.+. ++.|++++ .+.+.+
T Consensus 339 ~~~~~~~~~~~~i~~~--~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~ 415 (529)
T 1jdh_A 339 SRHQEAEMAQNAVRLH--YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL-VRAHQDTQR 415 (529)
T ss_dssp SSSTTHHHHHHHHHHT--TCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHH-HHHHHHHC-
T ss_pred cCCchHHHHHHHHHHc--CChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHH-HHHhHHHHH
Confidence 86 2 35678888 99999999999876 599999999999999888888888877 89999988 333333
Q ss_pred -------------------HHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCCh
Q 047123 471 -------------------LQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSN 531 (579)
Q Consensus 471 -------------------v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~ 531 (579)
+++.++.+|++|+....++..+. +.++++.|++++.+++++ .++.+..+|.+|+.++.
T Consensus 416 ~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~-~~~~v~~l~~ll~~~~~~-v~~~a~~~l~~l~~~~~- 492 (529)
T 1jdh_A 416 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR-GLNTIPLFVQLLYSPIEN-IQRVAAGVLCELAQDKE- 492 (529)
T ss_dssp ----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHH-HTTCHHHHHHGGGCSCHH-HHHHHHHHHHHHTTSHH-
T ss_pred HHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHh-ccCCccHHHHHHcCCchH-HHHHHHHHHHHHhcCHH-
Confidence 44577788888988766666665 589999999999998877 78889999999986644
Q ss_pred hHHHHHHHcCchHHHHhhhccCCchHH
Q 047123 532 GCRKRLVAAGAYQHLQKLAETEVPGAK 558 (579)
Q Consensus 532 ~~r~~i~~~g~~~~L~~L~~~~~~~ak 558 (579)
.+..|.+.|+++.|.+|+++++++.+
T Consensus 493 -~~~~i~~~~~~~~L~~l~~~~~~~v~ 518 (529)
T 1jdh_A 493 -AAEAIEAEGATAPLTELLHSRNEGVA 518 (529)
T ss_dssp -HHHHHHHTTCHHHHHHGGGCSSHHHH
T ss_pred -HHHHHHHcCChHHHHHHhcCCCHHHH
Confidence 89999999999999999999988654
No 14
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=6.3e-33 Score=295.89 Aligned_cols=358 Identities=14% Similarity=0.214 Sum_probs=293.2
Q ss_pred cHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHH
Q 047123 205 NVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PENAWA 283 (579)
Q Consensus 205 ~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-~~~~~~ 283 (579)
.+|.|+++|+ ++++++|..|+.+|.+++..++.++..+++.|++|+|+++|+++++.++..|+++|.+|+.+ ++++..
T Consensus 3 ~l~~lv~~L~-s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLS-SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHH-SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5899999999 99999999999999999985667788999999999999999999999999999999999975 899999
Q ss_pred HHhcCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHh--------cCC--------CHHHH
Q 047123 284 ISAYGGVSVLIEAFR-SGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSL--------TSS--------SNLAQ 346 (579)
Q Consensus 284 i~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL--------~~~--------~~~v~ 346 (579)
+++.|+++.|+++|. ++++.+++.++++|+||+.+++++..+++ |++|.|+.++ .++ ++.++
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 999999999999999 88999999999999999999999999999 9999999999 222 45677
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhc-CcHHHHHHhhccC----CCChHHHHHHHHHHHHcccc-h----------------
Q 047123 347 ENAADCIATLAASGEYFRLLIIQE-RGLQRLMHLIQDS----TSSIVTVENALLAISSLSLS-D---------------- 404 (579)
Q Consensus 347 ~~a~~~L~~La~~~~~~r~~l~~~-g~i~~Lv~ll~~~----~~~~~~~~~A~~aL~~L~~~-~---------------- 404 (579)
..++++|.||+.. +..+..+.+. |+++.|+.++.++ ..+.+.++.++.+|+||+.. +
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 7999999999987 6788899987 9999999999862 12236899999999999742 0
Q ss_pred -----------------------------------hHHHHHhhcCcHHHHHHHHHhcC-CHHHHHHHHHHHHHhcC-Chh
Q 047123 405 -----------------------------------SAARILSSTTSFIIQLGEFIKRG-NVLLQQVSSSLLGNLSI-SDG 447 (579)
Q Consensus 405 -----------------------------------~~~~l~~~~~g~i~~L~~lL~~~-~~~v~~~A~~aL~~L~~-~~~ 447 (579)
..+.++.. |+++.|+.+|.+. ++.+++.|+++|.||+. +..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHS--DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCc--chHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 11123344 7889999999754 68999999999999993 322
Q ss_pred ----h-HHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchh-----hhh
Q 047123 448 ----N-KRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEA-----LNK 515 (579)
Q Consensus 448 ----~-~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~-----~~k 515 (579)
. +..+.+. ++.|+++| .+.+.+++..|+.+|.||+.+..++. .+. .+++++|+++|...++. ...
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL-~~~~~~v~~~A~~aL~nls~~~~~~~-~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~ 394 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLL-QSGNSDVVRSGASLLSNMSRHPLLHR-VMG-NQVFPEVTRLLTSHTGNTSNSEDIL 394 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSGGGHH-HHH-HHTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHH-hCCCHhHHHHHHHHHHHHhcCHHHHH-HHH-HhhhHHHHHhccCCCCCCCCcHHHH
Confidence 2 2233334 99999999 77789999999999999998765554 443 57999999999887542 245
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhccC-CchHHH----HHHHHh-cCcchh
Q 047123 516 KFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETE-VPGAKK----VLQRLA-GNRLKN 571 (579)
Q Consensus 516 ~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~-~~~ak~----~~~~l~-~~~~~~ 571 (579)
..++.+|.++..... +.++.+.+.|+++.|++|+.++ ++.+++ +++.++ ...||+
T Consensus 395 ~~~l~~l~ni~~~~~-~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~~ 455 (457)
T 1xm9_A 395 SSACYTVRNLMASQP-QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQG 455 (457)
T ss_dssp HHHHHHHHHHHTTCT-HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSS
T ss_pred HHHHHHHHHHHhcCH-HHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhhc
Confidence 577777888875443 4788889999999999999998 776654 444444 344444
No 15
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.6e-32 Score=302.13 Aligned_cols=388 Identities=18% Similarity=0.187 Sum_probs=341.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
.++.|+.+|++++++++..|+.+|.+++..++..+..+.+.|+++.|+++|+ ++++.++..++.+|.+++..+++++..
T Consensus 99 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~~ 177 (644)
T 2z6h_A 99 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLI 177 (644)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHC-cCCHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 5899999999999999999999999999988888888999999999999999 889999999999999999768899999
Q ss_pred HHhcCCHHHHHHHHccCC-HHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhh
Q 047123 243 VFEEGGLGPLLRILETGS-MPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDI 321 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~-~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~ 321 (579)
+++.|+++.|+++|++++ ..+++.++.+|.+|+.+++++..+.+.|+++.|+.++.+++..++..++++|.|++.....
T Consensus 178 i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~ 257 (644)
T 2z6h_A 178 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 257 (644)
T ss_dssp HHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT
T ss_pred HHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh
Confidence 999999999999999874 6788999999999999999999999999999999999999999999999999999874322
Q ss_pred HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcc
Q 047123 322 KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLS 401 (579)
Q Consensus 322 ~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~ 401 (579)
. ....++++.|+.++.++++.++..++++|.+|+..++..+..+.+.|+++.|+.++......+.+++.|+++|+||+
T Consensus 258 ~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~ 335 (644)
T 2z6h_A 258 Q--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 335 (644)
T ss_dssp C--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred h--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence 1 11236899999999999999999999999999998878899999999999999999875433489999999999999
Q ss_pred cc-h----hHHHHHhhcCcHHHHHHHHHhcCC-HHHHHHHHHHHHHhcCChhhHHHHHHH--HHHHHHhccCC-------
Q 047123 402 LS-D----SAARILSSTTSFIIQLGEFIKRGN-VLLQQVSSSLLGNLSISDGNKRAVASC--MGSLIKLMECP------- 466 (579)
Q Consensus 402 ~~-~----~~~~l~~~~~g~i~~L~~lL~~~~-~~v~~~A~~aL~~L~~~~~~~~~i~~~--v~~Lv~lL~~~------- 466 (579)
.. . .+..+... |+++.|+.+|.+.+ ..++..|+++|+||+.+++.+..+.+. ++.|++++...
T Consensus 336 ~~~~~~~~~q~~v~~~--~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~ 413 (644)
T 2z6h_A 336 SRHQEAEMAQNAVRLH--YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 413 (644)
T ss_dssp SSSTTHHHHHHHHHHT--THHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC
T ss_pred cCCchHHHHHHHHHHc--cChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhH
Confidence 75 2 23447778 99999999998875 699999999999999888888888777 99999988321
Q ss_pred --------------CCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChh
Q 047123 467 --------------KPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNG 532 (579)
Q Consensus 467 --------------~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~ 532 (579)
.+.++++.++.+|++|+....++..+. +.++++.|+++|.+.+++ +++.++.+|.+++.++.
T Consensus 414 a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~-~~~~i~~Lv~lL~~~~~~-v~~~a~~aL~~l~~~~~-- 489 (644)
T 2z6h_A 414 TSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR-GLNTIPLFVQLLYSPIEN-IQRVAAGVLCELAQDKE-- 489 (644)
T ss_dssp ----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHH-HTTCHHHHHHHTTCSCHH-HHHHHHHHHHHHHTSHH--
T ss_pred hhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHH-hCCcHHHHHHHHcCCCHH-HHHHHHHHHHHHHcCHH--
Confidence 245788899999999998876666555 589999999999988877 78899999999987644
Q ss_pred HHHHHHHcCchHHHHhhhccCCchHHH
Q 047123 533 CRKRLVAAGAYQHLQKLAETEVPGAKK 559 (579)
Q Consensus 533 ~r~~i~~~g~~~~L~~L~~~~~~~ak~ 559 (579)
.+..|.+.|+++.|+++++++++..++
T Consensus 490 ~~~~i~~~g~l~~L~~ll~~~~~~vr~ 516 (644)
T 2z6h_A 490 AAEAIEAEGATAPLTELLHSRNEGVAT 516 (644)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHcCChhHHHHHHcCCCHHHHH
Confidence 899999999999999999998886643
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.6e-31 Score=290.86 Aligned_cols=361 Identities=17% Similarity=0.210 Sum_probs=323.1
Q ss_pred HHHHHHHHHhccCC-HHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH
Q 047123 162 LFIRDIFTRLQIGG-VEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR 240 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~-~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~ 240 (579)
..|+.|+.+|++++ ++.+..|+.+|.+++.++++++..+++.|+++.|+.+|. ++++.+++.|+++|++|+.+.+.++
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~ 195 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLG-SSSDDVREQAVWALGNVAGDSPKCR 195 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCChhhH
Confidence 36899999999987 999999999999999998999999999999999999999 9999999999999999998668899
Q ss_pred HHHHhcCCHHHHHHHH-ccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh
Q 047123 241 KIVFEEGGLGPLLRIL-ETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVE 319 (579)
Q Consensus 241 ~~i~~~g~l~~Lv~lL-~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~ 319 (579)
..+...|++++|+.+| .+.+..++..++++|.+|+...+........|+++.|+.++.++++.++..++++|.+++..+
T Consensus 196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 275 (528)
T 4b8j_A 196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT 275 (528)
T ss_dssp HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999 567899999999999999976554455556899999999999999999999999999999865
Q ss_pred hh-HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccC-CCChHHHHHHHHHH
Q 047123 320 DI-KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDS-TSSIVTVENALLAI 397 (579)
Q Consensus 320 ~~-~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~-~~~~~~~~~A~~aL 397 (579)
+. ...+.+.|+++.|+.+|.+.++.++..++++|++++..++.....+.+.|+++.|+.++.+. +. .++..|+++|
T Consensus 276 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~--~v~~~A~~~L 353 (528)
T 4b8j_A 276 NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKK--SIKKEACWTI 353 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCH--HHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcH--HHHHHHHHHH
Confidence 54 46777999999999999999999999999999999998888888899999999999999977 44 8999999999
Q ss_pred HHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccCCCCHhH
Q 047123 398 SSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMECPKPVGL 471 (579)
Q Consensus 398 ~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v 471 (579)
.||+.. +....++.. |+++.|+.+|.+++..++..|+++|.+++ .+++....+.+. ++.|+.+| ...+..+
T Consensus 354 ~nl~~~~~~~~~~~~~~--~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL-~~~d~~v 430 (528)
T 4b8j_A 354 SNITAGNKDQIQAVINA--GIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLL-ICPDIRI 430 (528)
T ss_dssp HHHHTSCHHHHHHHHHT--TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGG-GCSCHHH
T ss_pred HHHHCCCHHHHHHHHHC--CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHH-cCCCHHH
Confidence 999976 556778888 99999999999999999999999999999 368888888877 99999999 7788999
Q ss_pred HHHHHHHHHHhhcCCcc-----------hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCC
Q 047123 472 QEAATDAVLSLLTVRSN-----------RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGG 529 (579)
Q Consensus 472 ~~~a~~aL~~L~~~~~~-----------~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~ 529 (579)
+..++.+|.+|+...+. ....+.+.+|+..|..++.+.+++ +++.+..++.++...+
T Consensus 431 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~-v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 431 VTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNE-IYEKAVKILEAYWMDE 498 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHH-HHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHH-HHHHHHHHHHHHCCCc
Confidence 99999999999865433 456666789999999998888777 8889999998887654
No 17
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2.2e-32 Score=297.20 Aligned_cols=386 Identities=15% Similarity=0.151 Sum_probs=332.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHH-hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH
Q 047123 162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVA-KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR 240 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~-~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~ 240 (579)
..++.|+.+|+++++.++..|+..|.+++.++ .++..+. ..|+++.|+++|..+++++++..|+.+|.+++. +++++
T Consensus 17 ~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-~~~~~ 94 (529)
T 1jdh_A 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGL 94 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHH
T ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-CchhH
Confidence 36899999999999999999999999999755 4555555 468999999999723489999999999999999 88899
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-C
Q 047123 241 KIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-V 318 (579)
Q Consensus 241 ~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~ 318 (579)
..+++.|++++|+++|+++++.++..++++|.+|+.+ ++.+..+.+.|+++.|+.++.+++..++..++.+|.+++. +
T Consensus 95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~ 174 (529)
T 1jdh_A 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999975 5678888899999999999999999999999999999997 6
Q ss_pred hhhHHHHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHH
Q 047123 319 EDIKAALAEEGAVPVLVQSLTSS-SNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAI 397 (579)
Q Consensus 319 ~~~~~~l~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL 397 (579)
++++..+.+.|+++.|+.++.++ ....+..++.+|.+++..+ ..+..+.+.|+++.|+.++.+.+. .++..++++|
T Consensus 175 ~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~~~~L~~ll~~~~~--~~~~~a~~~L 251 (529)
T 1jdh_A 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQ--RLVQNCLWTL 251 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTTTSSCH--HHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHHhCCCh--HHHHHHHHHH
Confidence 88999999999999999999655 4578888999999999754 568899999999999999988754 8999999999
Q ss_pred HHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccC-CCCHhHHH
Q 047123 398 SSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMEC-PKPVGLQE 473 (579)
Q Consensus 398 ~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~-~~~~~v~~ 473 (579)
.+|+....... ... |+++.|+.++.+.+++++..|+++|++|+ .+++.+..+.+. ++.|++++.+ +.+..+++
T Consensus 252 ~~l~~~~~~~~-~~~--~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~ 328 (529)
T 1jdh_A 252 RNLSDAATKQE-GME--GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 328 (529)
T ss_dssp HHHHTTCTTCS-CCH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCChhhH-HHH--hHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHH
Confidence 99998721111 123 78999999999999999999999999999 567888888887 9999999943 34489999
Q ss_pred HHHHHHHHhhcCCcc---hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhh
Q 047123 474 AATDAVLSLLTVRSN---RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLA 550 (579)
Q Consensus 474 ~a~~aL~~L~~~~~~---~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~ 550 (579)
.++.+|+||+..++. .+..+.+.++++.|+++|.+++....++.+++++.+++.+.. ++..+.+.|+++.|++++
T Consensus 329 ~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~--~~~~~~~~~~i~~L~~ll 406 (529)
T 1jdh_A 329 PAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA--NHAPLREQGAIPRLVQLL 406 (529)
T ss_dssp HHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG--GHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh--hhHHHHHcCCHHHHHHHH
Confidence 999999999876443 233444689999999999987753488899999999998766 889999999999999999
Q ss_pred ccCCchH
Q 047123 551 ETEVPGA 557 (579)
Q Consensus 551 ~~~~~~a 557 (579)
..+++..
T Consensus 407 ~~~~~~v 413 (529)
T 1jdh_A 407 VRAHQDT 413 (529)
T ss_dssp HHHHHHH
T ss_pred HHHhHHH
Confidence 8755443
No 18
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=288.46 Aligned_cols=320 Identities=17% Similarity=0.185 Sum_probs=278.0
Q ss_pred HHHHHHHHhcc------------CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcH----------HHHHHhhccCCC--
Q 047123 163 FIRDIFTRLQI------------GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNV----------GYLISLLDFHHQ-- 218 (579)
Q Consensus 163 ~v~~Lv~~L~~------------~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v----------~~Lv~LL~~~~~-- 218 (579)
.++.|+.+|+. ++++.+.+|+++|.+++..+++......+.+.+ +.+++++. +..
T Consensus 71 ~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~ 149 (458)
T 3nmz_A 71 CLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQE-AHEPG 149 (458)
T ss_dssp CHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTSSS
T ss_pred CHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHH-hhccc
Confidence 47889999985 447999999999999999998888887788877 77777777 542
Q ss_pred HH-----HHH-------HHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcc-----------CCHHHHHHHHHHHHHhc
Q 047123 219 SS-----IRE-------QAVLALSIIVSANDESRKIVFEEGGLGPLLRILET-----------GSMPLKEKAAIGVEAIT 275 (579)
Q Consensus 219 ~~-----~~~-------~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~-----------~~~~v~~~aa~~L~~Ls 275 (579)
.+ +++ +|+++|.+++. ++++|..+++.|++++|+.+|.. .++.+++.|+++|.+|+
T Consensus 150 ~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 150 MDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 22 555 99999999999 89999999999999999999952 24678999999999999
Q ss_pred CCCc-cHHHHHhc-CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--hhhHHHHHHcCCHHHHHHHh-cCCCHHHHHHHH
Q 047123 276 TDPE-NAWAISAY-GGVSVLIEAFRSGTALTQSHAVGAIRNIAAV--EDIKAALAEEGAVPVLVQSL-TSSSNLAQENAA 350 (579)
Q Consensus 276 ~~~~-~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~--~~~~~~l~~~g~v~~Lv~lL-~~~~~~v~~~a~ 350 (579)
.+.+ ++..+... |.|+.|+.+|.++++++++.++++|+||+.. ++++..+++.|+|+.|+++| .++++.+++.++
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~ 308 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 308 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Confidence 7654 67777654 5599999999999999999999999999984 67899999999999999975 667889999999
Q ss_pred HHHHHHhcCChhhHHHHH-hcCcHHHHHHhhccCCCCh--HHHHHHHHHHHHccc----c-hhHHHHHhhcCcHHHHHHH
Q 047123 351 DCIATLAASGEYFRLLII-QERGLQRLMHLIQDSTSSI--VTVENALLAISSLSL----S-DSAARILSSTTSFIIQLGE 422 (579)
Q Consensus 351 ~~L~~La~~~~~~r~~l~-~~g~i~~Lv~ll~~~~~~~--~~~~~A~~aL~~L~~----~-~~~~~l~~~~~g~i~~L~~ 422 (579)
.+|+||+...+..+..+. ..|+++.|++++.+.++.. .+++.|+++|+||+. . +.+..+++. |+++.|+.
T Consensus 309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~--G~i~~Lv~ 386 (458)
T 3nmz_A 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN--NCLQTLLQ 386 (458)
T ss_dssp HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHc--ccHHHHHH
Confidence 999999985555677777 7999999999998776421 489999999999996 3 677888899 99999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCc
Q 047123 423 FIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRS 487 (579)
Q Consensus 423 lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~ 487 (579)
+|.+++..++++|+++|+||+ .+++++..+.+. ++.|++++ .+++..+++.|+.+|.||+...+
T Consensus 387 LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL-~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 387 HLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI-HSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTT-TCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999 789999999998 99999999 78899999999999999997643
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=8.4e-32 Score=286.42 Aligned_cols=386 Identities=16% Similarity=0.152 Sum_probs=330.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhc-cChhhHHHHHhh-CcHHHHHHhhccCC-CHHHHHHHHHHHHHhhccChhhH
Q 047123 164 IRDIFTRLQIGGVEFKKKALESLLQLLK-DDDKSAAVVAKE-GNVGYLISLLDFHH-QSSIREQAVLALSIIVSANDESR 240 (579)
Q Consensus 164 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~-~~~~~~~~i~~~-g~v~~Lv~LL~~~~-~~~~~~~A~~aL~~La~~~~~~~ 240 (579)
++.++..|++++++.|..|+..|+.++. ........+++. |+++.|+++|+ ++ ++.+|..|+++|.+++..+++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~-~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLK-RKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHT-CTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHC-CCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 7889999999999999999999999865 222333556666 99999999999 87 89999999999999998667888
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcC
Q 047123 241 KIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PENAWAISAYGGVSVLIEAFRS-GTALTQSHAVGAIRNIAAV 318 (579)
Q Consensus 241 ~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLs~~ 318 (579)
..+++.|+++.|+++|+++++.+++.|+++|.+++.+ ++++..+.+.|+++.|+.++.+ .+..++..++++|.+++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 8888999999999999999999999999999999975 4688888899999999999996 6899999999999999975
Q ss_pred h--hhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHH
Q 047123 319 E--DIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLA 396 (579)
Q Consensus 319 ~--~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~a 396 (579)
. ..+..++ .++++.|+.++.++++.++..++++|.+++...+..+..+.+.|+++.|+.++.+.+. .++..|+++
T Consensus 181 ~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~--~v~~~a~~~ 257 (450)
T 2jdq_A 181 KSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDY--KVVSPALRA 257 (450)
T ss_dssp SSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCH--HHHHHHHHH
T ss_pred CCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCch--hHHHHHHHH
Confidence 3 3333333 7899999999999999999999999999998776777888889999999999986654 899999999
Q ss_pred HHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccCCCCHhH
Q 047123 397 ISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMECPKPVGL 471 (579)
Q Consensus 397 L~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v 471 (579)
|.+++.. .....+++. |+++.|+.++.+.++.++..|+++|.+++ .+++..+.+.+. ++.|++++ .+.+..+
T Consensus 258 L~~l~~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l-~~~~~~v 334 (450)
T 2jdq_A 258 VGNIVTGDDIQTQVILNC--SALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISIL-QTAEFRT 334 (450)
T ss_dssp HHHHTTSCHHHHHHHHTT--THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH-HHSCHHH
T ss_pred HHHHhhCChHHHHHHHHC--ccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-hcCCHHH
Confidence 9999987 445567788 99999999999999999999999999999 677777777765 99999999 5668999
Q ss_pred HHHHHHHHHHhhcC-C-cchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC----------hhHHHHHHH
Q 047123 472 QEAATDAVLSLLTV-R-SNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS----------NGCRKRLVA 539 (579)
Q Consensus 472 ~~~a~~aL~~L~~~-~-~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~----------~~~r~~i~~ 539 (579)
|..|+.+|++++.. . ...+.++ +.++++.|+++|...+.. .++.++.+|.+++.... ......+.+
T Consensus 335 ~~~a~~~L~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~-v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~ 412 (450)
T 2jdq_A 335 RKEAAWAITNATSGGSAEQIKYLV-ELGCIKPLCDLLTVMDSK-IVQVALNGLENILRLGEQEAKRNGTGINPYCALIEE 412 (450)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHH-HHTCHHHHHHGGGSSCHH-HHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-HCCCHHHHHHHhcCCCHH-HHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHH
Confidence 99999999999875 3 3344455 689999999999988776 88888988988875332 124578889
Q ss_pred cCchHHHHhhhccCCchHH
Q 047123 540 AGAYQHLQKLAETEVPGAK 558 (579)
Q Consensus 540 ~g~~~~L~~L~~~~~~~ak 558 (579)
.|+++.|..|.+++++..+
T Consensus 413 ~g~~~~l~~l~~~~~~~v~ 431 (450)
T 2jdq_A 413 AYGLDKIEFLQSHENQEIY 431 (450)
T ss_dssp HHCHHHHHHHHCHHHHHHH
T ss_pred cCcHHHHHHHHcCCCHHHH
Confidence 9999999999887766543
No 20
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.2e-31 Score=298.74 Aligned_cols=382 Identities=15% Similarity=0.158 Sum_probs=331.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHH-hhCcHHHHHHhhccCC-CHHHHHHHHHHHHHhhccChhhH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVA-KEGNVGYLISLLDFHH-QSSIREQAVLALSIIVSANDESR 240 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~-~~g~v~~Lv~LL~~~~-~~~~~~~A~~aL~~La~~~~~~~ 240 (579)
.|+.|+.+|+++++.+|..|+..|.+++.+++ ++..+. ..|+++.|+++|. ++ +++++..|+.+|.+|+. +++++
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~-~~~~~~~~~~A~~~L~~Ls~-~~~~~ 91 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQ-NTNDVETARCTAGTLHNLSH-HREGL 91 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHTT-SHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHh-cCCCHHHHHHHHHHHHHHhc-ChhhH
Confidence 58999999999999999999999999998764 555555 4589999999998 65 89999999999999999 88899
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-C
Q 047123 241 KIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-V 318 (579)
Q Consensus 241 ~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~ 318 (579)
..+.+.|+++.|+++|+++++.++..|+++|.+|+.. ++.+..+.+.|+++.|+.+++++++.++..++.+|.+++. +
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~ 171 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999964 5677788899999999999999999999999999999996 7
Q ss_pred hhhHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHH
Q 047123 319 EDIKAALAEEGAVPVLVQSLTSSS-NLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAI 397 (579)
Q Consensus 319 ~~~~~~l~~~g~v~~Lv~lL~~~~-~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL 397 (579)
++++..+.+.|+++.|+.++.+.+ +.+++.++.+|.+++... ..+..+++.|+++.|+.++.+.+. .++..++++|
T Consensus 172 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~-~~~~~l~~~g~l~~L~~ll~~~~~--~~~~~a~~~L 248 (644)
T 2z6h_A 172 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQ--RLVQNCLWTL 248 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT-THHHHHHHTTHHHHHHTTTTCSCH--HHHHHHHHHH
T ss_pred cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHHhcCCH--HHHHHHHHHH
Confidence 889999999999999999997654 678899999999999754 568999999999999999988754 8999999999
Q ss_pred HHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH--HHHHHHhccCCC-CHhHHH
Q 047123 398 SSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC--MGSLIKLMECPK-PVGLQE 473 (579)
Q Consensus 398 ~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~-~~~v~~ 473 (579)
.||+...... .... ++++.|+.++.+.++.++..|+++|.+|+ .++++++.+.+. ++.|++++.+.. ...++.
T Consensus 249 ~nL~~~~~~~-~~~~--~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~ 325 (644)
T 2z6h_A 249 RNLSDAATKQ-EGME--GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 325 (644)
T ss_dssp HHHGGGCTTC-CSCH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhhcchhh-hhhh--hHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHH
Confidence 9999872111 1223 78999999999999999999999999999 567888888877 999999994433 379999
Q ss_pred HHHHHHHHhhcCCcc---hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhh
Q 047123 474 AATDAVLSLLTVRSN---RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLA 550 (579)
Q Consensus 474 ~a~~aL~~L~~~~~~---~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~ 550 (579)
.|+.+|++|+...+. .+..+.+.++++.|+++|.+.+....++.++++|.+|+.+.. +++.+++.|+++.|++++
T Consensus 326 ~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~--~~~~i~~~~~i~~Lv~lL 403 (644)
T 2z6h_A 326 PAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA--NHAPLREQGAIPRLVQLL 403 (644)
T ss_dssp HHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG--GHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH--HHHHHHHcCCHHHHHHHH
Confidence 999999999875432 233344689999999999987643488999999999998876 889999999999999998
Q ss_pred ccCCc
Q 047123 551 ETEVP 555 (579)
Q Consensus 551 ~~~~~ 555 (579)
..++.
T Consensus 404 ~~~~~ 408 (644)
T 2z6h_A 404 VRAHQ 408 (644)
T ss_dssp HHHHH
T ss_pred hccch
Confidence 77543
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.2e-30 Score=284.04 Aligned_cols=362 Identities=15% Similarity=0.170 Sum_probs=322.9
Q ss_pred HHHHHHHHHhccC-CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH
Q 047123 162 LFIRDIFTRLQIG-GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR 240 (579)
Q Consensus 162 ~~v~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~ 240 (579)
..++.|+..|+++ +++++..|+.+|.+++..++.....++..|+++.|+.+|+ ++++.+++.|+++|++|+..+++++
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~ 208 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDYR 208 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH-HCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCccch
Confidence 3689999999997 8999999999999999988899999999999999999999 9999999999999999999568899
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-ccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-
Q 047123 241 KIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDP-ENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV- 318 (579)
Q Consensus 241 ~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~- 318 (579)
..++..|++++|+.+|.+.+..++..++++|.+|+.+. +........++++.|+.++.++++.++..++++|.+++..
T Consensus 209 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~ 288 (530)
T 1wa5_B 209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 288 (530)
T ss_dssp HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999754 4445566689999999999999999999999999999974
Q ss_pred hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123 319 EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAIS 398 (579)
Q Consensus 319 ~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~ 398 (579)
++....+.+.|+++.|+.++.+.++.++..++++|.+++..++.....+.+.|+++.|+.++.+.+. .++..|+++|.
T Consensus 289 ~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~--~vr~~A~~aL~ 366 (530)
T 1wa5_B 289 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE--NIKKEACWTIS 366 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCH--HHHHHHHHHHH
Confidence 5667778899999999999999999999999999999998887778888899999999999998754 89999999999
Q ss_pred Hcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CCh--hhHHHHHHH--HHHHHHhccCCCCHh
Q 047123 399 SLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISD--GNKRAVASC--MGSLIKLMECPKPVG 470 (579)
Q Consensus 399 ~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~--~~~~~i~~~--v~~Lv~lL~~~~~~~ 470 (579)
+++.+ +....+++. |+++.|+.+|.++++.++..|+++|.+++ .++ +..+.+.+. ++.|+.++ ...+..
T Consensus 367 ~l~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~ 443 (530)
T 1wa5_B 367 NITAGNTEQIQAVIDA--NLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL-EIADNR 443 (530)
T ss_dssp HHTTSCHHHHHHHHHT--TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHT-TTCCHH
T ss_pred HHHcCCHHHHHHHHHC--CCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHH-hCCCHH
Confidence 99976 556677888 99999999999999999999999999998 345 677777776 99999999 677899
Q ss_pred HHHHHHHHHHHhhcCCcc-----------hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123 471 LQEAATDAVLSLLTVRSN-----------RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS 530 (579)
Q Consensus 471 v~~~a~~aL~~L~~~~~~-----------~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~ 530 (579)
++..++.+|.+++...++ ....+.+.+|++.|..++.++++. +++.+..++.++...+.
T Consensus 444 v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~-v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 444 IIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDK-IYEKAYKIIETYFGEEE 513 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHH-HHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHH-HHHHHHHHHHHHCCccc
Confidence 999999999999865432 334455789999999999888877 88899999998887654
No 22
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=2.5e-31 Score=301.33 Aligned_cols=395 Identities=19% Similarity=0.201 Sum_probs=343.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
.|+.|+.+|+++++.++..|+.+|.+++...+..+..+.+.|+++.|+++|+ +++..+++.++.+|.+++..+++++..
T Consensus 235 ~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~-~~~~~v~~~a~~aL~~La~~~~e~~~~ 313 (780)
T 2z6g_A 235 GIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLI 313 (780)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCChHHHHH
Confidence 6899999999999999999999999999988888899999999999999999 899999999999999999768899999
Q ss_pred HHhcCCHHHHHHHHccCC-HHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhh
Q 047123 243 VFEEGGLGPLLRILETGS-MPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDI 321 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~-~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~ 321 (579)
+++.|+++.|+++|++++ ...++.++.+|.+|+.+++++..+++.|+++.|+.++.+++..++..++++|.+++.....
T Consensus 314 i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~ 393 (780)
T 2z6g_A 314 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 393 (780)
T ss_dssp HHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh
Confidence 999999999999999875 5567789999999999999999999999999999999999999999999999999875422
Q ss_pred HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcc
Q 047123 322 KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLS 401 (579)
Q Consensus 322 ~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~ 401 (579)
. ....++++.|+.++.+.++.++..++++|.+|+..++..+..+.+.|+++.|++++......+.++..|+++|+||+
T Consensus 394 ~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~ 471 (780)
T 2z6g_A 394 Q--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 471 (780)
T ss_dssp C--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred h--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 1 11246899999999999999999999999999998878889999999999999999874432479999999999999
Q ss_pred cc--h---hHHHHHhhcCcHHHHHHHHHhcCCH-HHHHHHHHHHHHhcCChhhHHHHHHH--HHHHHHhccCC-------
Q 047123 402 LS--D---SAARILSSTTSFIIQLGEFIKRGNV-LLQQVSSSLLGNLSISDGNKRAVASC--MGSLIKLMECP------- 466 (579)
Q Consensus 402 ~~--~---~~~~l~~~~~g~i~~L~~lL~~~~~-~v~~~A~~aL~~L~~~~~~~~~i~~~--v~~Lv~lL~~~------- 466 (579)
.. + .+..+... |+++.|+.+|.+.+. .++..|+++|+||+.+++.+..+.+. ++.|+++|...
T Consensus 472 ~~~~~~~~~~~~v~~~--~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~ 549 (780)
T 2z6g_A 472 SRHQDAEMAQNAVRLH--YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 549 (780)
T ss_dssp SSSTTHHHHHHHHHHT--TCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHT
T ss_pred hcCchHHHHHHHHHHc--CCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHH
Confidence 75 2 24567777 999999999988775 99999999999999888888888776 89999988321
Q ss_pred --------------CCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChh
Q 047123 467 --------------KPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNG 532 (579)
Q Consensus 467 --------------~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~ 532 (579)
.+.++++.++.+|++|+....++..+. +.++++.|+++|.+.++. ++..++.+|.+|+.++.
T Consensus 550 aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~-~~~~i~~Lv~lL~~~~~~-v~~~a~~aL~~L~~~~~-- 625 (780)
T 2z6g_A 550 TSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIR-GLNTIPLFVQLLYSPIEN-IQRVAAGVLCELAQDKE-- 625 (780)
T ss_dssp TC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHH-HTCCHHHHHHGGGCSCHH-HHHHHHHHHHHHHTSHH--
T ss_pred HhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHH-HCCcHHHHHHHHcCCCHH-HHHHHHHHHHHHhcCHH--
Confidence 125678899999999998766666555 689999999999998877 88889999999987655
Q ss_pred HHHHHHHcCchHHHHhhhccCCchHH----HHHHHHhc
Q 047123 533 CRKRLVAAGAYQHLQKLAETEVPGAK----KVLQRLAG 566 (579)
Q Consensus 533 ~r~~i~~~g~~~~L~~L~~~~~~~ak----~~~~~l~~ 566 (579)
.+..|.+.|+++.|++|++++++..+ .++.++..
T Consensus 626 ~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 626 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 89999999999999999999887654 44555554
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=2.2e-30 Score=275.50 Aligned_cols=360 Identities=15% Similarity=0.195 Sum_probs=317.7
Q ss_pred HHHHHHHHhccC-CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123 163 FIRDIFTRLQIG-GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK 241 (579)
Q Consensus 163 ~v~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~ 241 (579)
.++.|+..|+++ +++++..|+.+|.+++..+++....+.+.|+++.|+++|+ ++++.+|+.|+.+|.+++..+++++.
T Consensus 65 ~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 65 VVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLS-SEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 689999999998 8999999999999999988888888889999999999999 99999999999999999996678999
Q ss_pred HHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcCC--CccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 047123 242 IVFEEGGLGPLLRILET-GSMPLKEKAAIGVEAITTD--PENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV 318 (579)
Q Consensus 242 ~i~~~g~l~~Lv~lL~~-~~~~v~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~ 318 (579)
.+++.|+++.|++++.+ .+..++..++++|.+|+.+ +.....+. .++++.|+.++.++++.++..++++|.+++..
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 99999999999999996 6899999999999999964 33333333 78999999999999999999999999999984
Q ss_pred -hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHH
Q 047123 319 -EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAI 397 (579)
Q Consensus 319 -~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL 397 (579)
++....+.+.|+++.|+.++.+.++.++..++++|.+++..++..+..+.+.|+++.|+.++.+.+. .++..|+++|
T Consensus 223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~--~vr~~a~~~L 300 (450)
T 2jdq_A 223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKE--SIKKEACWTI 300 (450)
T ss_dssp SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSH--HHHHHHHHHH
T ss_pred CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCH--HHHHHHHHHH
Confidence 5667778899999999999999999999999999999999887777788889999999999988654 8999999999
Q ss_pred HHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccCCCCHhH
Q 047123 398 SSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMECPKPVGL 471 (579)
Q Consensus 398 ~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v 471 (579)
.+++.+ .....+++. |+++.|+.++.++++.++..|+++|.+++ .+++..+.+.+. ++.|++++ ..++..+
T Consensus 301 ~~l~~~~~~~~~~~~~~--~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v 377 (450)
T 2jdq_A 301 SNITAGNRAQIQTVIDA--NIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLL-TVMDSKI 377 (450)
T ss_dssp HHHTTSCHHHHHHHHHT--THHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGG-GSSCHHH
T ss_pred HHHHcCCHHHHHHHHHC--CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHh-cCCCHHH
Confidence 999975 566678888 99999999999999999999999999998 367777777776 99999999 6678999
Q ss_pred HHHHHHHHHHhhcCCcc-----------hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123 472 QEAATDAVLSLLTVRSN-----------RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS 530 (579)
Q Consensus 472 ~~~a~~aL~~L~~~~~~-----------~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~ 530 (579)
+..++.+|.+++...++ ....+.+.+|++.|..++++++.. +++.++.++.++...+.
T Consensus 378 ~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~-v~~~a~~~l~~~~~~~~ 446 (450)
T 2jdq_A 378 VQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQE-IYQKAFDLIEHYFGTED 446 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHH-HHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHH-HHHHHHHHHHHHCCccc
Confidence 99999999999865432 234555788999999988877666 88999999998886553
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.97 E-value=1e-29 Score=288.06 Aligned_cols=380 Identities=15% Similarity=0.172 Sum_probs=317.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
.++.++..|++++.+.+..++..+... ....+ ..|+++.|+.+|. ++++.+|+.|+.+|.+|+. ++.++..
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~------~~~~i-~~g~ip~Lv~lL~-~~d~~vr~~A~~~L~~L~~-~~~~~~~ 186 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQ------DDAEL-ATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSK-KEASRHA 186 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHH------HHHHH-HHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHT-SHHHHHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhh------hHHHH-HhCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhC-CChhHHH
Confidence 478999999999988888888877643 12233 4899999999999 9999999999999999999 7788887
Q ss_pred HHhc-CCHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-h
Q 047123 243 VFEE-GGLGPLLRILETG-SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV-E 319 (579)
Q Consensus 243 i~~~-g~l~~Lv~lL~~~-~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~-~ 319 (579)
+... |+++.|++.|+++ +++++..|+.+|.+|+.+++++..+.+.|+++.|+.+++++++.++..|+++|.||+.. +
T Consensus 187 i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~ 266 (780)
T 2z6g_A 187 IMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQE 266 (780)
T ss_dssp HTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST
T ss_pred HHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh
Confidence 7754 8999999999876 89999999999999999888999999999999999999999999999999999999985 5
Q ss_pred hhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHH
Q 047123 320 DIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISS 399 (579)
Q Consensus 320 ~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~ 399 (579)
+.+..+.+.|+++.|+.++.+.+..++..++.+|.+++..++..+..+.+.|+++.|+.++++.+. ...++.++.+|++
T Consensus 267 ~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~-~~~~~~a~~aL~~ 345 (780)
T 2z6g_A 267 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY-EKLLWTTSRVLKV 345 (780)
T ss_dssp THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCC-HHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCH-HHHHHHHHHHHHH
Confidence 677778899999999999999999999999999999998888889999999999999999998765 4677899999999
Q ss_pred cccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHH
Q 047123 400 LSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDA 478 (579)
Q Consensus 400 L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~a 478 (579)
|+.. ..+..++.. |+++.|+.++.+.+..++..++++|.+|+........+...++.|++++ .+++..++..|+.+
T Consensus 346 Ls~~~~~~~~i~~~--g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL-~~~d~~vr~~A~~a 422 (780)
T 2z6g_A 346 LSVCSSNKPAIVEA--GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGI 422 (780)
T ss_dssp HHTSTTHHHHHHHT--THHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred hhcChHHHHHHHHh--chHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHH-cCCCHHHHHHHHHH
Confidence 9988 777888899 9999999999999999999999999999933221111222399999999 78899999999999
Q ss_pred HHHhhcCCcchhHHHhhcccHHHHHhhcCCC-chhhhhHHHHHHHHHHhCCCCh--hHHHHHHHcCchHHHHhhhccCCc
Q 047123 479 VLSLLTVRSNRKELVRDEKSVMRLMQMLDPK-NEALNKKFPVMVTAAVLGGGSN--GCRKRLVAAGAYQHLQKLAETEVP 555 (579)
Q Consensus 479 L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~~k~~av~~L~~L~~~~~~--~~r~~i~~~g~~~~L~~L~~~~~~ 555 (579)
|++|+......+..+.+.++++.|+++|... +.+..+..++.+|.+|+..... ..+..+.+.|+++.|++++..+.+
T Consensus 423 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~ 502 (780)
T 2z6g_A 423 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSH 502 (780)
T ss_dssp HHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCC
T ss_pred HHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCCh
Confidence 9999987655555555689999999999763 3323889999999999875432 246788999999999999987754
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=3.3e-29 Score=256.33 Aligned_cols=266 Identities=18% Similarity=0.196 Sum_probs=236.2
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcc-----------CCHHHHHHHHHHHHHhcCCC-ccHHHHHh
Q 047123 219 SSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILET-----------GSMPLKEKAAIGVEAITTDP-ENAWAISA 286 (579)
Q Consensus 219 ~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~-----------~~~~v~~~aa~~L~~Ls~~~-~~~~~i~~ 286 (579)
...+..|+++|.+++. ++++|..+++.|++++|+.+|.. .++.+++.|+++|.+|+.+. +++..+..
T Consensus 46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3555689999999999 89999999999999999999953 24779999999999999765 47777866
Q ss_pred c-CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--hhhHHHHHHcCCHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChh
Q 047123 287 Y-GGVSVLIEAFRSGTALTQSHAVGAIRNIAAV--EDIKAALAEEGAVPVLVQSL-TSSSNLAQENAADCIATLAASGEY 362 (579)
Q Consensus 287 ~-g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~--~~~~~~l~~~g~v~~Lv~lL-~~~~~~v~~~a~~~L~~La~~~~~ 362 (579)
. |+|+.|+.+|.++++.+++.++++|+||+.. ++++..+++.|+||.|+++| +++++.+++.++.+|+||+...+.
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 5 4599999999999999999999999999984 67899999999999999974 678899999999999999986656
Q ss_pred hHHHHH-hcCcHHHHHHhhccCCCCh--HHHHHHHHHHHHccc----c-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHH
Q 047123 363 FRLLII-QERGLQRLMHLIQDSTSSI--VTVENALLAISSLSL----S-DSAARILSSTTSFIIQLGEFIKRGNVLLQQV 434 (579)
Q Consensus 363 ~r~~l~-~~g~i~~Lv~ll~~~~~~~--~~~~~A~~aL~~L~~----~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~ 434 (579)
.+..+. ..|+++.|++++.+.++.. .+++.|+++|+||+. . +.+..+.+. |+++.|+.+|++++..+++.
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~v~~~ 282 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN--NCLQTLLQHLKSHSLTIVSN 282 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT--THHHHHHHHTTCSCHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHc--CCHHHHHHHHcCCChHHHHH
Confidence 677887 7999999999998766421 489999999999996 4 677888898 99999999999999999999
Q ss_pred HHHHHHHhc-CChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcc
Q 047123 435 SSSLLGNLS-ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSN 488 (579)
Q Consensus 435 A~~aL~~L~-~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~ 488 (579)
|+++|+||+ .+++.++.+.+. ++.|++++ .+++..+++.|+.+|.||+...+.
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL-~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLI-HSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTT-TCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999 789999999988 99999999 788899999999999999987554
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=2.5e-29 Score=257.20 Aligned_cols=261 Identities=20% Similarity=0.242 Sum_probs=233.7
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccC-----------CCHHHHHHHHHHHHHhhccChhhHHHHHh
Q 047123 177 EFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFH-----------HQSSIREQAVLALSIIVSANDESRKIVFE 245 (579)
Q Consensus 177 ~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~-----------~~~~~~~~A~~aL~~La~~~~~~~~~i~~ 245 (579)
..+.+|+.+|.+++.+ +++++.+++.|+++.|+.+|. . .++.+|+.|+++|.+|+..+++++..+..
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~-~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQ-VDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHH-HHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHh-cccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456899999999875 799999999999999999994 2 24789999999999999855668877765
Q ss_pred c-CCHHHHHHHHccCCHHHHHHHHHHHHHhcCC--CccHHHHHhcCcHHHHHHH-hcCCCHHHHHHHHHHHHHhhc-Chh
Q 047123 246 E-GGLGPLLRILETGSMPLKEKAAIGVEAITTD--PENAWAISAYGGVSVLIEA-FRSGTALTQSHAVGAIRNIAA-VED 320 (579)
Q Consensus 246 ~-g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~l-l~~~~~~~~~~a~~aL~nLs~-~~~ 320 (579)
. |+||+|+++|+++++++++.|+++|.+|+.. ++++..+.+.|+|+.|+.+ +.+++..+++.++.+|+||+. .++
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 5 5599999999999999999999999999974 5789999999999999997 466789999999999999999 778
Q ss_pred hHHHHH-HcCCHHHHHHHhcCCCH----HHHHHHHHHHHHHhc---CChhhHHHHHhcCcHHHHHHhhccCCCChHHHHH
Q 047123 321 IKAALA-EEGAVPVLVQSLTSSSN----LAQENAADCIATLAA---SGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVEN 392 (579)
Q Consensus 321 ~~~~l~-~~g~v~~Lv~lL~~~~~----~v~~~a~~~L~~La~---~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~ 392 (579)
++..++ ..|+++.|+.+|.++++ .+++.++++|.|++. .++..+..+.+.|+++.|++++.+++. .+++.
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~v~~~ 282 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL--TIVSN 282 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCH--HHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCCh--HHHHH
Confidence 888888 79999999999987654 599999999999997 577789999999999999999998775 89999
Q ss_pred HHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123 393 ALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS 443 (579)
Q Consensus 393 A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~ 443 (579)
|+++|+||+.. +.+..+++. |+++.|+.++++++..+++.|+++|.||+
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~--G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDM--GAVSMLKNLIHSKHKMIAMGSAAALRNLM 333 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHT--THHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHC--CCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 99999999964 678889999 99999999999999999999999999999
No 27
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=9.3e-26 Score=220.78 Aligned_cols=237 Identities=22% Similarity=0.299 Sum_probs=222.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
..+.++..|++++++.+..|+.+|..+...++.++..+.+.|+++.|+++|+ ++++.++..|+.+|.+++..+++++..
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3688999999999999999999998877767788889999999999999999 999999999999999999868999999
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccH-HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-Chh
Q 047123 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENA-WAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VED 320 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~ 320 (579)
+++.|+++.|+++|+++++.+++.++++|.+|+.+++++ ..+.+.|+++.|+.++.++++.++..++++|.|++. .++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999988888 889999999999999999999999999999999998 567
Q ss_pred hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHc
Q 047123 321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSL 400 (579)
Q Consensus 321 ~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L 400 (579)
.+..+.+.|+++.|+.++.++++.++..++++|.+++..++..+..+.+.|+++.|+.++.+.++ .+++.|+++|.||
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--~v~~~A~~~L~~l 249 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENE--KIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSS--HHHHTHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCH--HHHHHHHHHHHHH
Confidence 77888899999999999999999999999999999998888888899999999999999998876 8999999999999
Q ss_pred cc
Q 047123 401 SL 402 (579)
Q Consensus 401 ~~ 402 (579)
+.
T Consensus 250 ~~ 251 (252)
T 4db8_A 250 QS 251 (252)
T ss_dssp C-
T ss_pred hc
Confidence 85
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=2.4e-25 Score=217.24 Aligned_cols=238 Identities=26% Similarity=0.354 Sum_probs=224.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
.|+.|+..|++++++.+..|+.+|.+++..+++++..+.+.|+++.|+++|+ ++++.++..|+.+|.+++..+++++..
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 4789999999999999999999999999999889999999999999999999 999999999999999999955999999
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc-CCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-Chh
Q 047123 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAIT-TDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VED 320 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls-~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~ 320 (579)
+++.|+++.|+.+|++++++++..++++|.+|+ .+++++..+.+.|+++.|+.++.++++.++..++++|.|++. .++
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 577899999999999999999999999999999999999998 556
Q ss_pred hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHc
Q 047123 321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSL 400 (579)
Q Consensus 321 ~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L 400 (579)
.+..+.+.|+++.|+.++.++++.++..++++|.+++..++..+..+.+.|+++.|++++.+.+. .+++.|+++|+||
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~--~v~~~a~~~L~~l 239 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDS--EVQKEAQRALENI 239 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcH--HHHHHHHHHHHHH
Confidence 66888899999999999999999999999999999999888888899999999999999988765 8999999999999
Q ss_pred ccc
Q 047123 401 SLS 403 (579)
Q Consensus 401 ~~~ 403 (579)
+..
T Consensus 240 ~~~ 242 (252)
T 4hxt_A 240 KSG 242 (252)
T ss_dssp HHT
T ss_pred HcC
Confidence 876
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=3.5e-25 Score=216.09 Aligned_cols=235 Identities=25% Similarity=0.347 Sum_probs=221.3
Q ss_pred CcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHH
Q 047123 204 GNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PENAW 282 (579)
Q Consensus 204 g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-~~~~~ 282 (579)
|.++.|+++|+ ++++++|..|+.+|.+++..+++++..+++.|+++.|+++|++++.+++..++++|.+|+.+ ++++.
T Consensus 2 ~~i~~L~~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLT-STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 57999999999 99999999999999999985667999999999999999999999999999999999999976 88999
Q ss_pred HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhh-cChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh
Q 047123 283 AISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIA-AVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGE 361 (579)
Q Consensus 283 ~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs-~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~ 361 (579)
.+.+.|+++.|+.++.++++.++..++++|.|++ .+++++..+.+.|+++.|++++.++++.++..++++|.+++..++
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999999999999999999 578899999999999999999999999999999999999999888
Q ss_pred hhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHH
Q 047123 362 YFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLL 439 (579)
Q Consensus 362 ~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL 439 (579)
..+..+.+.|+++.|+.++.+.+. .++..|+++|.+++.. .....+.+. |+++.|+.+++++++.++..|+++|
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~~~--~v~~~a~~~L~~l~~~~~~~~~~l~~~--~~i~~L~~ll~~~~~~v~~~a~~~L 236 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTSTDS--EVQKEAARALANIASGPTSAIKAIVDA--GGVEVLQKLLTSTDSEVQKEAQRAL 236 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHTTSBHHHHHHHHHT--THHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCH--HHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHCCCcHHHHHHHHHHH
Confidence 878889999999999999997665 8999999999999985 667778888 9999999999999999999999999
Q ss_pred HHhc
Q 047123 440 GNLS 443 (579)
Q Consensus 440 ~~L~ 443 (579)
.||+
T Consensus 237 ~~l~ 240 (252)
T 4hxt_A 237 ENIK 240 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9999
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=8.7e-25 Score=213.86 Aligned_cols=237 Identities=20% Similarity=0.282 Sum_probs=218.7
Q ss_pred hCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccH
Q 047123 203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENA 281 (579)
Q Consensus 203 ~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~ 281 (579)
....+.++++|+ ++++++|..|+.+|.++...+++.+..+++.|+++.|+++|+++++.++..++++|.+++. +++++
T Consensus 11 ~~~~~~~~~~L~-s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 11 GSELPQMTQQLN-SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp TCSHHHHHHHHH-SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cchHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 346889999999 9999999999999976544377888999999999999999999999999999999999997 78899
Q ss_pred HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhH-HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 047123 282 WAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIK-AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASG 360 (579)
Q Consensus 282 ~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~-~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~ 360 (579)
..+.+.|+++.|+.++.++++.++..++++|.|++.+++.+ ..+.+.|+++.|+.++.++++.++..++++|.+++..+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999988888 88899999999999999999999999999999999988
Q ss_pred hhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHH
Q 047123 361 EYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSL 438 (579)
Q Consensus 361 ~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~a 438 (579)
+..+..+.+.|+++.|++++.+.+. .++..|+++|.+|+.. +....+++. |+++.|+.++.++++.++..|+++
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~v~~~A~~~ 245 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNE--QILQEALWALSNIASGGNEQKQAVKEA--GALEKLEQLQSHENEKIQKEAQEA 245 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSH--HHHHHHHHHHHHHTTSCHHHHHHHHHT--THHHHHHTTTTCSSSHHHHTHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCH--HHHHHHHHHHHHHhcCCHHHHHHHHHC--CcHHHHHHHhCCCCHHHHHHHHHH
Confidence 8888889999999999999998754 8999999999999965 567778888 999999999999999999999999
Q ss_pred HHHhcC
Q 047123 439 LGNLSI 444 (579)
Q Consensus 439 L~~L~~ 444 (579)
|.+|+.
T Consensus 246 L~~l~~ 251 (252)
T 4db8_A 246 LEKLQS 251 (252)
T ss_dssp HHTTC-
T ss_pred HHHHhc
Confidence 999973
No 31
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.6e-23 Score=224.65 Aligned_cols=383 Identities=12% Similarity=0.065 Sum_probs=292.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH-H
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR-K 241 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~-~ 241 (579)
+++.+...+..+..+....++-.+.+.+..++.+|..| ...++++|.++++ + ..+|..|+-+|..+.. .+... .
T Consensus 256 ~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I-~~~~~~~L~~~l~-~--~~ir~lAavvL~KL~~-~~~~~~~ 330 (778)
T 3opb_A 256 LSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYI-TENYLQLLERSLN-V--EDVQIYSALVLVKTWS-FTKLTCI 330 (778)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHTT-S--GGGHHHHHHHHHHHTG-GGTCTTC
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHH-HHhHHHHHHHHhc-c--HHHHHHHHHHHHHHhc-CCCCCcC
Confidence 46666667755443444444444444444566777776 5677899999998 5 4788899999999887 33221 1
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhc-CcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCh
Q 047123 242 IVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAY-GGVSVLIEAFRS-GTALTQSHAVGAIRNIAAVE 319 (579)
Q Consensus 242 ~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLs~~~ 319 (579)
.+. ...+.+.+.|..++.+.+..|++.|.+|+.+++.+..++.. |.++.|+.+++. ++..+...++.+|.|++...
T Consensus 331 si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~ 408 (778)
T 3opb_A 331 NLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLP 408 (778)
T ss_dssp CHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCC
T ss_pred cHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCC
Confidence 111 24566777777777777999999999999999999999985 569999999995 77789999999999997622
Q ss_pred h---------------------------------------hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 047123 320 D---------------------------------------IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASG 360 (579)
Q Consensus 320 ~---------------------------------------~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~ 360 (579)
+ ++..+.+.|+||.|+.++.++++.+++.++++|.+++..
T Consensus 409 ~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d- 487 (778)
T 3opb_A 409 EEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS- 487 (778)
T ss_dssp CCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-
T ss_pred cccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-
Confidence 1 345566899999999999999999999999999999975
Q ss_pred hhhHHHHHhcCcHHHHHHhhccCCCC-hHHHHHHHHHHHHcccchhHHHHHh--hcCcHHHHHHHHHhc--CC-------
Q 047123 361 EYFRLLIIQERGLQRLMHLIQDSTSS-IVTVENALLAISSLSLSDSAARILS--STTSFIIQLGEFIKR--GN------- 428 (579)
Q Consensus 361 ~~~r~~l~~~g~i~~Lv~ll~~~~~~-~~~~~~A~~aL~~L~~~~~~~~l~~--~~~g~i~~L~~lL~~--~~------- 428 (579)
+..|..+++.|+++.|++++.+++.. ...++.|+.+|.+|....+...+.. ...|++++|+.+|.. +.
T Consensus 488 ~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~ 567 (778)
T 3opb_A 488 KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHN 567 (778)
T ss_dssp GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---
T ss_pred HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccc
Confidence 57799999999999999999888641 2389999999999997633333332 112899999999983 21
Q ss_pred ----H-HHHHHHHHHHHHhcCC-----hhhHHHHHH-H--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcch-hHHHh
Q 047123 429 ----V-LLQQVSSSLLGNLSIS-----DGNKRAVAS-C--MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNR-KELVR 494 (579)
Q Consensus 429 ----~-~v~~~A~~aL~~L~~~-----~~~~~~i~~-~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~-~~~~~ 494 (579)
+ -.+..|+.||.||+.. ++.|+.+.. . ++.|..++ .+++..+|..|+++++||+.+...+ +.+..
T Consensus 568 ~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL-~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~ 646 (778)
T 3opb_A 568 DEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLM-LDENVPLQRSTLELISNMMSHPLTIAAKFFN 646 (778)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGG-GCSSHHHHHHHHHHHHHHHTSGGGTGGGTSC
T ss_pred cccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHH-hCCCHHHHHHHHHHHHHHhCCcHHHHHHHHh
Confidence 1 2377999999999943 356776665 2 99999999 7778999999999999999877664 34542
Q ss_pred h-----cccHHHHHhhcCCCchhhhhHHHHHHHHHHhC-CCChhHHHHHHHc-CchHHHHhhhcc--CCchH
Q 047123 495 D-----EKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG-GGSNGCRKRLVAA-GAYQHLQKLAET--EVPGA 557 (579)
Q Consensus 495 ~-----~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~-~~~~~~r~~i~~~-g~~~~L~~L~~~--~~~~a 557 (579)
. .+++..||.+++..+.+ .++.|.++|.+++. ++. .++.+++. +++..++.+++. ++++.
T Consensus 647 ~~~~~~~~rL~lLV~Ll~s~D~~-~r~AAagALAnLts~~~~--ia~~ll~~~~gi~~Ll~lL~~~~~~~~l 715 (778)
T 3opb_A 647 LENPQSLRNFNILVKLLQLSDVE-SQRAVAAIFANIATTIPL--IAKELLTKKELIENAIQVFADQIDDIEL 715 (778)
T ss_dssp CSSHHHHHHHHHHHHGGGCSCHH-HHHHHHHHHHHHHHHCHH--HHHHHTTCHHHHHHHHHHHHHTTTCHHH
T ss_pred hcCchhhccHHHHHHHHcCCCHH-HHHHHHHHHHHhcCCChH--HHHHHHHccccHHHHHHHHhccCCCHHH
Confidence 1 22488999999988777 89999999999964 444 66777766 899999999988 56543
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.6e-23 Score=225.41 Aligned_cols=381 Identities=16% Similarity=0.160 Sum_probs=294.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
+++-|...+++ .+.|..|+..|..+..........+ ....+.++++|. .++.+.+..|+..|..++. +++.|+.
T Consensus 297 ~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si--~~La~~~~~~L~-~~~~~~~~~AvEgLaYLSl-~~~VKe~ 370 (778)
T 3opb_A 297 YLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINL--KQLSEIFINAIS-RRIVPKVEMSVEALAYLSL-KASVKIM 370 (778)
T ss_dssp HHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCH--HHHHHHHHHHTT-TCCHHHHHHHHHHHHHHTT-SSHHHHH
T ss_pred HHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcH--HHHHHHHHHHHh-cCCccHHHHHHHHHHHHhC-CHHHHHH
Confidence 45556666654 4678888888888765332211111 225677888887 7777779999999999999 9999999
Q ss_pred HHhc-CCHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCc---------------------------------------cH
Q 047123 243 VFEE-GGLGPLLRILET-GSMPLKEKAAIGVEAITTDPE---------------------------------------NA 281 (579)
Q Consensus 243 i~~~-g~l~~Lv~lL~~-~~~~v~~~aa~~L~~Ls~~~~---------------------------------------~~ 281 (579)
++.. |.+..|+++++. ++..+...++.+|.||+.+.+ ++
T Consensus 371 L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~ 450 (778)
T 3opb_A 371 IRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNE 450 (778)
T ss_dssp HHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHH
Confidence 8865 569999999995 677889999999999995322 45
Q ss_pred HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHH---HHHHHHHHHHHHhc
Q 047123 282 WAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNL---AQENAADCIATLAA 358 (579)
Q Consensus 282 ~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~---v~~~a~~~L~~La~ 358 (579)
..+.+.|+++.|+.++.++++.+++.++++|.||+.++++|..++++|+++.|+.++.+++.. .+..|+.+|.+++.
T Consensus 451 ~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLli 530 (778)
T 3opb_A 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLI 530 (778)
T ss_dssp HHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHh
Confidence 677889999999999999999999999999999999999999999999999999999887654 89999999999985
Q ss_pred CChhhHHHHHh---cCcHHHHHHhhccCCCC-----------h-HHHHHHHHHHHHcccch------hHHHHHh-hcCcH
Q 047123 359 SGEYFRLLIIQ---ERGLQRLMHLIQDSTSS-----------I-VTVENALLAISSLSLSD------SAARILS-STTSF 416 (579)
Q Consensus 359 ~~~~~r~~l~~---~g~i~~Lv~ll~~~~~~-----------~-~~~~~A~~aL~~L~~~~------~~~~l~~-~~~g~ 416 (579)
.... ...+.. .|++++|+.+|..+... + ..+..|+.||.||+..+ .+..++. . |+
T Consensus 531 s~np-~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~--ga 607 (778)
T 3opb_A 531 FTNP-GLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTK--VY 607 (778)
T ss_dssp TSCH-HHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSH--HH
T ss_pred cCCH-HHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhc--CH
Confidence 4322 122211 38999999999832210 1 22779999999999973 2555666 6 89
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhH-HHHH-----HH---HHHHHHhccCCCCHhHHHHHHHHHHHhhc-CC
Q 047123 417 IIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNK-RAVA-----SC---MGSLIKLMECPKPVGLQEAATDAVLSLLT-VR 486 (579)
Q Consensus 417 i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~-~~i~-----~~---v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~-~~ 486 (579)
++.|..+|.+++..+|..|+.+++||+.+++.. +.+. .. ++.|+.++ ++++.++|..|+++|.+++. .+
T Consensus 608 ~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll-~s~D~~~r~AAagALAnLts~~~ 686 (778)
T 3opb_A 608 WSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLL-QLSDVESQRAVAAIFANIATTIP 686 (778)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCCh
Confidence 999999999999999999999999999888764 2331 21 89999999 88899999999999999965 45
Q ss_pred cchhHHHhhcccHHHHHhhcCC--CchhhhhHHHHHHHHHHhC----CCChhHHHHHH-HcCchHHHHhhhccCC
Q 047123 487 SNRKELVRDEKSVMRLMQMLDP--KNEALNKKFPVMVTAAVLG----GGSNGCRKRLV-AAGAYQHLQKLAETEV 554 (579)
Q Consensus 487 ~~~~~~~~~~~~i~~Lv~lL~~--~~~~~~k~~av~~L~~L~~----~~~~~~r~~i~-~~g~~~~L~~L~~~~~ 554 (579)
...+.++...+|+..+++++.+ .+++ .+..++.++.+++. +.+.+.-..+. .......|.++++.++
T Consensus 687 ~ia~~ll~~~~gi~~Ll~lL~~~~~~~~-l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~ 760 (778)
T 3opb_A 687 LIAKELLTKKELIENAIQVFADQIDDIE-LRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGD 760 (778)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTCHH-HHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHccccHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCC
Confidence 5677788766899999999998 5666 78888888999996 22211222333 4556667777776663
No 33
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.91 E-value=9.6e-24 Score=201.50 Aligned_cols=197 Identities=17% Similarity=0.247 Sum_probs=177.3
Q ss_pred cHHHHHHhhccCCCH--HHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccH
Q 047123 205 NVGYLISLLDFHHQS--SIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENA 281 (579)
Q Consensus 205 ~v~~Lv~LL~~~~~~--~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~ 281 (579)
.+|.|+++|. ++++ .+|..|+.+|.+++..+++++..+++.|+||+|+++|+++++++|+.|+++|.+|+. +++++
T Consensus 9 ~i~~lV~lL~-s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLE-ADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCC-SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhC-CCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 5899999999 8887 899999999999997688999999999999999999999999999999999999997 68999
Q ss_pred HHHHhcCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhc----------------CCCHH
Q 047123 282 WAISAYGGVSVLIEAFR-SGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLT----------------SSSNL 344 (579)
Q Consensus 282 ~~i~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~----------------~~~~~ 344 (579)
..|.+.|+|+.|+++|. +++..+++.++.+|+||+.++++|..+++. +++.|+.++. ..++.
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999998 578999999999999999999999999875 6999988652 12669
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhc-CcHHHHHHhhccC----CCChHHHHHHHHHHHHcccc
Q 047123 345 AQENAADCIATLAASGEYFRLLIIQE-RGLQRLMHLIQDS----TSSIVTVENALLAISSLSLS 403 (579)
Q Consensus 345 v~~~a~~~L~~La~~~~~~r~~l~~~-g~i~~Lv~ll~~~----~~~~~~~~~A~~aL~~L~~~ 403 (579)
+++++..+|.||+..+++.|..+.+. |+|+.|+.+++.. ..+.+.+++|+.+|+||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999999888889999985 6789999999763 23358999999999999975
No 34
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=3e-23 Score=198.04 Aligned_cols=196 Identities=16% Similarity=0.150 Sum_probs=176.6
Q ss_pred HHHHHHHHHhccCCH--HHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh
Q 047123 162 LFIRDIFTRLQIGGV--EFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDES 239 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~~--~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~ 239 (579)
..++.++.+|+++++ +.+..|+.+|..++..++.++..+.+.|+||.|+++|+ ++++++|+.|+++|.+|+..++++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~-s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLK-VQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHH
Confidence 358999999999988 88899999999999999999999999999999999999 999999999999999999867999
Q ss_pred HHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhc----------------CCCH
Q 047123 240 RKIVFEEGGLGPLLRILE-TGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFR----------------SGTA 302 (579)
Q Consensus 240 ~~~i~~~g~l~~Lv~lL~-~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~----------------~~~~ 302 (579)
+..+++.|+|++|+++|. +++.++++.++.+|++|+..++++..|.+. ++++|+.++. ..++
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence 999999999999999998 479999999999999999999999999875 7899998652 1266
Q ss_pred HHHHHHHHHHHHhhc-ChhhHHHHHHc-CCHHHHHHHhcC------CCHHHHHHHHHHHHHHhcC
Q 047123 303 LTQSHAVGAIRNIAA-VEDIKAALAEE-GAVPVLVQSLTS------SSNLAQENAADCIATLAAS 359 (579)
Q Consensus 303 ~~~~~a~~aL~nLs~-~~~~~~~l~~~-g~v~~Lv~lL~~------~~~~v~~~a~~~L~~La~~ 359 (579)
.++++|.++|+||+. ++++|..|.+. |+|+.|+.+++. .+...++.++.+|+||+..
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 899999999999988 66999999975 678999999964 2557999999999999863
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=7.3e-22 Score=187.46 Aligned_cols=195 Identities=23% Similarity=0.305 Sum_probs=184.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
..+.|+.+|++++++++..|+.+|.+++..+++.+..+.+.|+++.|+++|+ ++++.+++.|+++|++++..+++++..
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 5788999999999999999999999999999999999999999999999999 999999999999999999658899999
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-hh
Q 047123 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV-ED 320 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~-~~ 320 (579)
+++.|+++.|+.+|+++++.++..++++|.+|+. +++.+..+.+.|+++.|+.++.++++.++..++++|.|++.. ++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 171 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH
Confidence 9999999999999999999999999999999995 556777888999999999999999999999999999999986 78
Q ss_pred hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123 321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA 358 (579)
Q Consensus 321 ~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~ 358 (579)
.+..+.+.|+++.|++++.++++.+++.|+++|.+++.
T Consensus 172 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 172 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999975
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=5.6e-22 Score=188.29 Aligned_cols=198 Identities=21% Similarity=0.285 Sum_probs=183.4
Q ss_pred hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCcc
Q 047123 202 KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPEN 280 (579)
Q Consensus 202 ~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~ 280 (579)
..|+.+.|+.+|+ ++++.++..|+++|.+++..+++.+..+++.|+++.|+++|+++++.+++.|+++|.+|+. ++++
T Consensus 10 ~~~~~~~l~~LL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 4678999999999 9999999999999999996588999999999999999999999999999999999999995 6788
Q ss_pred HHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 047123 281 AWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAAS 359 (579)
Q Consensus 281 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~ 359 (579)
+..+.+.|+++.|+.++.++++.++..++++|.|++. .++.+..+.+.|+++.|++++.++++.++..++++|.+++..
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999996 566777888999999999999999999999999999999998
Q ss_pred ChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHccc
Q 047123 360 GEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSL 402 (579)
Q Consensus 360 ~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~ 402 (579)
++..+..+.+.|+++.|++++.+.+. .+++.|+.+|.+|+.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~--~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENE--KIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCH--HHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCH--HHHHHHHHHHHHHhc
Confidence 78889999999999999999997665 899999999999985
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.87 E-value=1.9e-20 Score=186.42 Aligned_cols=203 Identities=17% Similarity=0.191 Sum_probs=179.5
Q ss_pred HHHHHHHHhccC------------CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHH-hhccCCCHHHHHHHHHHH
Q 047123 163 FIRDIFTRLQIG------------GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLIS-LLDFHHQSSIREQAVLAL 229 (579)
Q Consensus 163 ~v~~Lv~~L~~~------------~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~-LL~~~~~~~~~~~A~~aL 229 (579)
.++..+..|++. +.+.+..|+..|.+++. +.++...+...|++++|+. +|+ ++++.+|+.|+++|
T Consensus 29 ~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~-s~~~~vr~~Aa~~L 106 (296)
T 1xqr_A 29 QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLE-AGAAGLRWRAAQLI 106 (296)
T ss_dssp HHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTT-CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence 345566666543 34688999999999986 4568888899999999999 999 99999999999999
Q ss_pred HHhhccChhhHHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHH
Q 047123 230 SIIVSANDESRKIVFEEGGLGPLLRILETG-SMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSH 307 (579)
Q Consensus 230 ~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 307 (579)
++++.+++.++..+++.|++++|+++|+++ +..+++.|+++|++|+. +++....|.+.|+++.|+.+|++++..++..
T Consensus 107 g~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~ 186 (296)
T 1xqr_A 107 GTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVK 186 (296)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHH
Confidence 999987889999999999999999999964 88999999999999996 5567788999999999999999999999999
Q ss_pred HHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 047123 308 AVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLI 367 (579)
Q Consensus 308 a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l 367 (579)
++++|.+++. +++.+..+++.|+++.|+.+|.++++.+++.++.+|.+++...+......
T Consensus 187 A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~ 247 (296)
T 1xqr_A 187 SAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC 247 (296)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHH
Confidence 9999999987 67889999999999999999999999999999999999998765444333
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.82 E-value=1.1e-18 Score=173.64 Aligned_cols=221 Identities=15% Similarity=0.147 Sum_probs=186.2
Q ss_pred CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHH-HhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHH
Q 047123 260 SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIE-AFRSGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQS 337 (579)
Q Consensus 260 ~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-ll~~~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~l 337 (579)
+.+-+..|...|.+++.+.++...|...|+++.|+. +|.++++.++..|+++|.|++. ++..+..+++.|+++.|+.+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 456788999999999999899999999999999999 9999999999999999999998 57788899999999999999
Q ss_pred hcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcC
Q 047123 338 LTS-SSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTT 414 (579)
Q Consensus 338 L~~-~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~ 414 (579)
|.+ .++.++..|+++|.|++.+++.....+.+.|+++.|+.++.+.+. .++..|+++|.+|+.+ +.+..+++.
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~--~v~~~A~~aLs~L~~~~~~~~~~vv~~-- 208 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQ--KLKVKSAFLLQNLLVGHPEHKGTLCSM-- 208 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCH--HHHHHHHHHHHHHHHHCGGGHHHHHHT--
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCH--HHHHHHHHHHHHHHhCChHHHHHHHHc--
Confidence 985 478999999999999999887777888899999999999998765 9999999999999987 678889999
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHH-------HHHHHHHhccCCC-CHhHHHHHHHHHHHhhc
Q 047123 415 SFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVAS-------CMGSLIKLMECPK-PVGLQEAATDAVLSLLT 484 (579)
Q Consensus 415 g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~-------~v~~Lv~lL~~~~-~~~v~~~a~~aL~~L~~ 484 (579)
|+++.|+.+|.+.+..+++.|+.+|.+|. ..+.....+.. .++.-++-++..+ ..++.+.+...+.++..
T Consensus 209 g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 209 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999 43444333321 1333344442122 45666777777766654
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.72 E-value=3.5e-14 Score=151.12 Aligned_cols=395 Identities=12% Similarity=0.134 Sum_probs=279.2
Q ss_pred HHHHHHHHhccC--CHHHHHHHHHHHHHHhccChh-----------------hHHH-HHhhCcHHHHHHhhccCCCHHHH
Q 047123 163 FIRDIFTRLQIG--GVEFKKKALESLLQLLKDDDK-----------------SAAV-VAKEGNVGYLISLLDFHHQSSIR 222 (579)
Q Consensus 163 ~v~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~-----------------~~~~-i~~~g~v~~Lv~LL~~~~~~~~~ 222 (579)
.++.|+..|+.+ |.+....+++.|..+...++. +... +.+.+.|+.|+.+|+ +.+..+|
T Consensus 61 ~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~-~~df~vR 139 (651)
T 3grl_A 61 AMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE-EFDFHVR 139 (651)
T ss_dssp THHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT-CCCHHHH
T ss_pred hHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc-CccHHHH
Confidence 478888888764 778888889999887654432 1223 346789999999999 9999999
Q ss_pred HHHHHHHHHhhccChh-hHHHHHhc-CCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcC
Q 047123 223 EQAVLALSIIVSANDE-SRKIVFEE-GGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRS 299 (579)
Q Consensus 223 ~~A~~aL~~La~~~~~-~~~~i~~~-g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~ 299 (579)
..++++|..|+...++ .++.+... ++++.|+.+|++....+|..+...|.+|+. +++.+..++-.|+++.|+.++..
T Consensus 140 ~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~ 219 (651)
T 3grl_A 140 WPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITE 219 (651)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHh
Confidence 9999999999986666 77878855 999999999999999999999999999996 55666666778999999999987
Q ss_pred CCH----HHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhcCCC------HHHHHH---HHHHHHHHhcC------
Q 047123 300 GTA----LTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSS------NLAQEN---AADCIATLAAS------ 359 (579)
Q Consensus 300 ~~~----~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~~~~------~~v~~~---a~~~L~~La~~------ 359 (579)
+.. .+...++.+|.||.. ++.|+..+.|.|+++.|..++..+. +....+ ++.++..+...
T Consensus 220 Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~ 299 (651)
T 3grl_A 220 EGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGA 299 (651)
T ss_dssp HTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHH
T ss_pred cCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 443 678889999999988 6679999999999999999986442 222233 66677777654
Q ss_pred ChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhc-------CcHHHHHHHHHhc-CCH
Q 047123 360 GEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSST-------TSFIIQLGEFIKR-GNV 429 (579)
Q Consensus 360 ~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~-------~g~i~~L~~lL~~-~~~ 429 (579)
...++..+.+.|+++.|++++........++..|..++..+..+ .+...+.... +-.+..|+.++.+ ...
T Consensus 300 t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~ 379 (651)
T 3grl_A 300 TSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPF 379 (651)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCH
T ss_pred CHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccH
Confidence 22457788999999999999887654468999999999999987 4444444431 2344445555544 356
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHHH--------------H-HHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHH
Q 047123 430 LLQQVSSSLLGNLS-ISDGNKRAVASC--------------M-GSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELV 493 (579)
Q Consensus 430 ~v~~~A~~aL~~L~-~~~~~~~~i~~~--------------v-~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~ 493 (579)
++|..|+.++.... .|++.+..+... . ..|..-+ -+.++.--..|+-+|.++...++..+...
T Consensus 380 ~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l-~s~d~~~~wfAavil~hll~~n~~~K~~~ 458 (651)
T 3grl_A 380 VLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGL-FSTDSLSNWCAAVALAHALQENATQKEQL 458 (651)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHH-TSSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhh-ccCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88989999998888 888888777765 1 1233434 33455555778999999998877666543
Q ss_pred hh-----------cccHHHHHhhcCCCchhhhhHHHHHHHHHHh----CCCChhHHHHHHHcC-chHHHHhhhccCCchH
Q 047123 494 RD-----------EKSVMRLMQMLDPKNEALNKKFPVMVTAAVL----GGGSNGCRKRLVAAG-AYQHLQKLAETEVPGA 557 (579)
Q Consensus 494 ~~-----------~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~----~~~~~~~r~~i~~~g-~~~~L~~L~~~~~~~a 557 (579)
.. ..-++.+...|...+.. +..++.|+-|+ .+.. .-+.+.+.| .++.|+..+..+..+.
T Consensus 459 l~v~l~~~~ge~~vtliq~~~~~L~~~~~~---ri~vgyL~LL~~WL~e~p~--AV~dFL~~~s~l~~L~~~i~~~~~~~ 533 (651)
T 3grl_A 459 LRVQLATSIGNPPVSLLQQCTNILSQGSKI---QTRVGLLMLLCTWLSNCPI--AVTHFLHNSANVPFLTGQIAENLGEE 533 (651)
T ss_dssp TTCBCCCCTTCCCCBHHHHHHHHTTTTCCH---HHHHHHHHHHHHHHTTCHH--HHHHHHHSTTHHHHHHHHHHSCCCHH
T ss_pred HhCcccccCCCCcccHHHHHHHHHhcCCch---hHHHHHHHHHHHHHhCChH--HHHHHHcCCchHHHHHHHHHhccCcc
Confidence 21 12255566666544322 23333333333 3332 545555444 5777776654332233
Q ss_pred HHHHHHH
Q 047123 558 KKVLQRL 564 (579)
Q Consensus 558 k~~~~~l 564 (579)
..+++.|
T Consensus 534 ~~lvqGL 540 (651)
T 3grl_A 534 EQLVQGL 540 (651)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 4444443
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.69 E-value=5.7e-14 Score=149.47 Aligned_cols=321 Identities=17% Similarity=0.147 Sum_probs=255.6
Q ss_pred HHHHHHHHHhccC-CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccC-CCHHHHHHHHHHHHHhhccChh-
Q 047123 162 LFIRDIFTRLQIG-GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFH-HQSSIREQAVLALSIIVSANDE- 238 (579)
Q Consensus 162 ~~v~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~-~~~~~~~~A~~aL~~La~~~~~- 238 (579)
..|+.|..++++. -.+.|+.|+..|..++++ ++..+. .++++.|+..|+.+ .|.++...++..|.++...+++
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 4799999999876 478999999999999764 333333 55699999988723 4688888999999876552322
Q ss_pred ----------------hHHHHH-hcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCc-cHHHHHh-cCcHHHHHHHhc
Q 047123 239 ----------------SRKIVF-EEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPE-NAWAISA-YGGVSVLIEAFR 298 (579)
Q Consensus 239 ----------------~~~~i~-~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~-~~~~i~~-~g~i~~Lv~ll~ 298 (579)
..+.++ +.+.++.|+.+|++.+..++..+..+|..|+. .++ ++..|.. .+|++.|+.+|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~ 176 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh
Confidence 122333 45789999999999999999999999999995 444 7888885 599999999999
Q ss_pred CCCHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhcCCC----HHHHHHHHHHHHHHhcCChhhHHHHHhcCcH
Q 047123 299 SGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSS----NLAQENAADCIATLAASGEYFRLLIIQERGL 373 (579)
Q Consensus 299 ~~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~~~~----~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i 373 (579)
+....+|..++..|.+|+. +.+.++.+.-+|+++.|+.++..+. ..+...++.+|.||...++..+..+.+.|++
T Consensus 177 d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i 256 (651)
T 3grl_A 177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYI 256 (651)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCG
T ss_pred CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCH
Confidence 9999999999999999998 5666777778999999999996532 3688999999999999999889999999999
Q ss_pred HHHHHhhccCCC----ChHHHHH---HHHHHHHcccc--------hhHHHHHhhcCcHHHHHHHHHhcC--CHHHHHHHH
Q 047123 374 QRLMHLIQDSTS----SIVTVEN---ALLAISSLSLS--------DSAARILSSTTSFIIQLGEFIKRG--NVLLQQVSS 436 (579)
Q Consensus 374 ~~Lv~ll~~~~~----~~~~~~~---A~~aL~~L~~~--------~~~~~l~~~~~g~i~~L~~lL~~~--~~~v~~~A~ 436 (579)
+.|..+++.... .+....+ +..+++-|+.. .+...+.+. |++..|+.++... ...++..|.
T Consensus 257 ~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~--g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 257 QRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQC--GLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp GGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHT--THHHHHHHHHTCSSCCHHHHHHHH
T ss_pred HHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHC--CCHHHHHHHHccCCCCHHHHHHHH
Confidence 999999875532 1112223 56677777654 345677888 9999999998765 678999999
Q ss_pred HHHHHhc-CChhhHHHHHHH-----------HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcc
Q 047123 437 SLLGNLS-ISDGNKRAVASC-----------MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSN 488 (579)
Q Consensus 437 ~aL~~L~-~~~~~~~~i~~~-----------v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~ 488 (579)
.++..+. .|+.++..|.+. +..|+.++.......+|.+++.++.+....++.
T Consensus 335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~ 398 (651)
T 3grl_A 335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK 398 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH
Confidence 9999998 888999988863 555666674556789999999999999877654
No 41
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.64 E-value=4.8e-14 Score=154.36 Aligned_cols=369 Identities=8% Similarity=0.001 Sum_probs=258.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
.++.+...++++++.+|..|+.+|..++...+.. ......+|.+..+++ +++..+|..++.+|+.++. .-. ..
T Consensus 204 l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~-d~~~~vR~~a~~~l~~l~~-~~~--~~ 276 (588)
T 1b3u_A 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAE-DKSWRVRYMVADKFTELQK-AVG--PE 276 (588)
T ss_dssp HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHT-CSSHHHHHHHHHTHHHHHH-HHC--HH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHH-HhC--cc
Confidence 4555566666666666666666666665432211 122346777777777 7788888888888888876 211 11
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC--CccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChh
Q 047123 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD--PENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVED 320 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~ 320 (579)
......++.+++++++.++.++..++.+|..++.. ++..........++.+..++++.++.++..++.+|..++..-.
T Consensus 277 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~ 356 (588)
T 1b3u_A 277 ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG 356 (588)
T ss_dssp HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC
T ss_pred cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 22345688999999999999999999999998842 2222222335677888899999999999999999988865221
Q ss_pred hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHc
Q 047123 321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSL 400 (579)
Q Consensus 321 ~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L 400 (579)
.. ......+|.+..++++.++.++..++.+|..+...... .......++.+..++.+.+. .++..++.+|..+
T Consensus 357 ~~--~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~~lp~l~~~~~d~~~--~vr~~~~~~l~~l 429 (588)
T 1b3u_A 357 KD--NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI---RQLSQSLLPAIVELAEDAKW--RVRLAIIEYMPLL 429 (588)
T ss_dssp HH--HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH---HHHHHHHHHHHHHHHTCSSH--HHHHHHHHHHHHH
T ss_pred Hh--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHH
Confidence 11 12234788899999999999999999999888753211 11224567788888776555 8999999999988
Q ss_pred ccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHH
Q 047123 401 SLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDA 478 (579)
Q Consensus 401 ~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~a 478 (579)
+.. .. . .... .+++.+..++.+.+..+|..|+.++..++..-+. ..+.+. ++.|.+++ .+.+..+|..++.+
T Consensus 430 ~~~~~~-~-~~~~--~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-~~~~~~llp~l~~~~-~~~~~~~R~~a~~~ 503 (588)
T 1b3u_A 430 AGQLGV-E-FFDE--KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK-EWAHATIIPKVLAMS-GDPNYLHRMTTLFC 503 (588)
T ss_dssp HHHHCG-G-GCCH--HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-HHHHHHTHHHHHHTT-TCSCHHHHHHHHHH
T ss_pred HHHcCH-H-HHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHh-hCCCHHHHHHHHHH
Confidence 764 11 0 1122 4678888889999999999999999999822111 122344 88888888 77789999999999
Q ss_pred HHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhccCCchHH
Q 047123 479 VLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAK 558 (579)
Q Consensus 479 L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~~~ak 558 (579)
++.++..... ... ....++.|++++++++++ ++..++.++..+...-. .........+.|.++....+++.+
T Consensus 504 l~~l~~~~~~--~~~-~~~~~~~l~~~l~d~~~~-Vr~~a~~~l~~l~~~~~----~~~~~~~~~p~l~~l~~d~d~~vr 575 (588)
T 1b3u_A 504 INVLSEVCGQ--DIT-TKHMLPTVLRMAGDPVAN-VRFNVAKSLQKIGPILD----NSTLQSEVKPILEKLTQDQDVDVK 575 (588)
T ss_dssp HHHHHHHHHH--HHH-HHHTHHHHHHGGGCSCHH-HHHHHHHHHHHHGGGSC----HHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHhcCH--HHH-HHHHHHHHHhhCCCCCch-HHHHHHHHHHHHHHHhc----hhhhHHHHHHHHHHHcCCCchhHH
Confidence 9999864221 112 146778899999888777 89999999999986543 223345677888888777777655
Q ss_pred H
Q 047123 559 K 559 (579)
Q Consensus 559 ~ 559 (579)
.
T Consensus 576 ~ 576 (588)
T 1b3u_A 576 Y 576 (588)
T ss_dssp H
T ss_pred H
Confidence 3
No 42
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.63 E-value=8.6e-14 Score=152.33 Aligned_cols=369 Identities=11% Similarity=0.053 Sum_probs=270.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhH
Q 047123 161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESR 240 (579)
Q Consensus 161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~ 240 (579)
...++.+...+++.++++|..|+.+|..++...+.. ......+|.|..+++ +++..+|..|+.+|..++...+.
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~-- 236 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLAS-DEQDSVRLLAVEACVNIAQLLPQ-- 236 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHT-CSCHHHHTTHHHHHHHHHHHSCH--
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHhCCH--
Confidence 345677778888999999999999999998644321 224678899999999 99999999999999999872221
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--
Q 047123 241 KIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV-- 318 (579)
Q Consensus 241 ~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~-- 318 (579)
.......++.+.+++++.+..+|..++.+|..++..... .......++.++.+++++++.++..++.+|..++..
T Consensus 237 -~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 237 -EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp -HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred -HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC
Confidence 122345788888999988999999999999999842111 122345789999999999999999999999988763
Q ss_pred hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123 319 EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAIS 398 (579)
Q Consensus 319 ~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~ 398 (579)
++.+........+|.+..++.+.+..++..++.+|..++..-.. .......++.+..++.+.++ .++..++.++.
T Consensus 314 ~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~--~Vr~~a~~~l~ 388 (588)
T 1b3u_A 314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECP--EVRLNIISNLD 388 (588)
T ss_dssp TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCH--HHHHHHHTTCH
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCch--HHHHHHHHHHH
Confidence 23232233445778888999999999999999999988752111 11223467888888876654 89999999988
Q ss_pred HcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--ChhhHHHHHHH-HHHHHHhccCCCCHhHHHHH
Q 047123 399 SLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI--SDGNKRAVASC-MGSLIKLMECPKPVGLQEAA 475 (579)
Q Consensus 399 ~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~--~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a 475 (579)
.++..-...... . .+++.+..++.+.+..++..++.++..++. .++ .+.+. ++.+.+++ .+++..+|+.|
T Consensus 389 ~l~~~~~~~~~~-~--~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l-~d~~~~Vr~~a 461 (588)
T 1b3u_A 389 CVNEVIGIRQLS-Q--SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWL-VDHVYAIREAA 461 (588)
T ss_dssp HHHHHSCHHHHH-H--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGG-GCSSHHHHHHH
T ss_pred HHHHhcCHHHHH-H--HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHh-cCCcHHHHHHH
Confidence 887652112222 2 578888899999999999999999999872 222 12223 78888999 67789999999
Q ss_pred HHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhccCCc
Q 047123 476 TDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVP 555 (579)
Q Consensus 476 ~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~~ 555 (579)
+.+|+.++...... +. -...++.|++++.+.+.. .+..++.++..++..- .........++.|.++++.+++
T Consensus 462 ~~~l~~l~~~~~~~--~~-~~~llp~l~~~~~~~~~~-~R~~a~~~l~~l~~~~----~~~~~~~~~~~~l~~~l~d~~~ 533 (588)
T 1b3u_A 462 TSNLKKLVEKFGKE--WA-HATIIPKVLAMSGDPNYL-HRMTTLFCINVLSEVC----GQDITTKHMLPTVLRMAGDPVA 533 (588)
T ss_dssp HHHHHHHHHHHCHH--HH-HHHTHHHHHHTTTCSCHH-HHHHHHHHHHHHHHHH----HHHHHHHHTHHHHHHGGGCSCH
T ss_pred HHHHHHHHHHhCch--hH-HHHHHHHHHHHhhCCCHH-HHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHhhCCCCCc
Confidence 99999998653321 12 145678888887766655 7888888888886532 2222335688889998888877
Q ss_pred hHH
Q 047123 556 GAK 558 (579)
Q Consensus 556 ~ak 558 (579)
..+
T Consensus 534 ~Vr 536 (588)
T 1b3u_A 534 NVR 536 (588)
T ss_dssp HHH
T ss_pred hHH
Confidence 665
No 43
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.59 E-value=8.7e-14 Score=159.71 Aligned_cols=374 Identities=11% Similarity=0.040 Sum_probs=256.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHH
Q 047123 164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIV 243 (579)
Q Consensus 164 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i 243 (579)
-..++..|.+.++.+|..++.++..+++.+... .-.+.++.|++.+. ++++.+++.++.+|..++...+.....-
T Consensus 92 k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~----~wp~ll~~L~~~l~-~~~~~~r~~al~~L~~i~~~~~~~~~~~ 166 (852)
T 4fdd_A 92 KSECLNNIGDSSPLIRATVGILITTIASKGELQ----NWPDLLPKLCSLLD-SEDYNTCEGAFGALQKICEDSAEILDSD 166 (852)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT----TCTTHHHHHHHHHS-CSSHHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc----ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhHHHhchh
Confidence 345667778888999999999999998754211 12568999999999 9999999999999999988322221100
Q ss_pred H----hcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-
Q 047123 244 F----EEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV- 318 (579)
Q Consensus 244 ~----~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~- 318 (579)
. -...++.+++.+.+.+..+|..|+++|.++.........-.-...++.|+.++.++++.++..++.+|.+++..
T Consensus 167 ~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~ 246 (852)
T 4fdd_A 167 VLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVR 246 (852)
T ss_dssp SSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHC
T ss_pred hhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC
Confidence 0 12357788888888899999999999998875432211111135778899999999999999999999999873
Q ss_pred hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--cCcHHHHHHhhc----------cC---
Q 047123 319 EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQ--ERGLQRLMHLIQ----------DS--- 383 (579)
Q Consensus 319 ~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~--~g~i~~Lv~ll~----------~~--- 383 (579)
++.-.... .+.++.++..+.+.++.++..+++++..++... ..+..+.. ...++.++..+. .+
T Consensus 247 ~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~-~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~e 324 (852)
T 4fdd_A 247 MDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQP-ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEG 324 (852)
T ss_dssp HHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST-THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC----
T ss_pred HHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccc
Confidence 22111111 246778888888889999999999999998643 22322211 234566666651 11
Q ss_pred C-------CChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH
Q 047123 384 T-------SSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC 455 (579)
Q Consensus 384 ~-------~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~ 455 (579)
+ ....++..|..+|..++.... ..++. .+++.+..++.+.+..+|..|+.++.+++ ...+....+.+.
T Consensus 325 d~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~---~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~ 400 (852)
T 4fdd_A 325 GSGGDDTISDWNLRKCSAAALDVLANVYR-DELLP---HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE 400 (852)
T ss_dssp --------CCCCHHHHHHHHHHHHHHHHG-GGGHH---HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHhcc-HHHHH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 0 112468889999998887611 12222 47778888888999999999999999999 333322223333
Q ss_pred -HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcc--hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCChh
Q 047123 456 -MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSN--RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGSNG 532 (579)
Q Consensus 456 -v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~--~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~~~ 532 (579)
++.+++.+ .+.+..+|..++.+|++++..... ...+. ...++.|++.|.+.++. ++..++.++.+++......
T Consensus 401 ~l~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~-vr~~a~~aL~~l~~~~~~~ 476 (852)
T 4fdd_A 401 LIPHLIQCL-SDKKALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKR-VQEAACSAFATLEEEACTE 476 (852)
T ss_dssp HHHHHHHHT-TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHH-HHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHHhhHh
Confidence 99999999 777899999999999999864211 11122 35678888888877766 8889999999887432211
Q ss_pred HHHHHHHcCchHHHHhhhccCC
Q 047123 533 CRKRLVAAGAYQHLQKLAETEV 554 (579)
Q Consensus 533 ~r~~i~~~g~~~~L~~L~~~~~ 554 (579)
.... . .+.++.|.++++...
T Consensus 477 l~~~-l-~~ll~~L~~~l~~~~ 496 (852)
T 4fdd_A 477 LVPY-L-AYILDTLVFAFSKYQ 496 (852)
T ss_dssp GGGG-H-HHHHHHHHHHHHHCC
T ss_pred hHhH-H-HHHHHHHHHHHHHhC
Confidence 1111 1 345555666665443
No 44
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.58 E-value=3.9e-13 Score=133.09 Aligned_cols=253 Identities=13% Similarity=0.044 Sum_probs=198.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
.++.|+..|+++++.+|..|+..|..+. + .+.++.|+.+|+ ++++.+|..|+.+|+.+.. .+.....
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~--~---------~~~~~~L~~~l~-d~~~~vR~~A~~aL~~l~~-~~~~~~~ 90 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG--G---------QDAVRLAIEFCS-DKNYIRRDIGAFILGQIKI-CKKCEDN 90 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC--C---------HHHHHHHHHHHT-CSSHHHHHHHHHHHHHSCC-CTTTHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccC--C---------chHHHHHHHHHc-CCCHHHHHHHHHHHHHhcc-ccccchH
Confidence 4789999999999999999999999885 2 346899999999 9999999999999999986 3322111
Q ss_pred HHhcCCHHHHH-HHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChh
Q 047123 243 VFEEGGLGPLL-RILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVED 320 (579)
Q Consensus 243 i~~~g~l~~Lv-~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~ 320 (579)
.++.|. .++++.++.++..++++|.++.. ++.. ....++.|+..+.++++.++..++.+|.++..
T Consensus 91 -----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--- 157 (280)
T 1oyz_A 91 -----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIND--- 157 (280)
T ss_dssp -----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----
T ss_pred -----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC---
Confidence 123333 24567899999999999999873 2211 12457899999999999999999999987653
Q ss_pred hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHc
Q 047123 321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSL 400 (579)
Q Consensus 321 ~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L 400 (579)
.++++.|+.++.+.++.++..++++|..+...++ ..++.|+.++.+.+. .++..|+.+|.++
T Consensus 158 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~--~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 158 -------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNE--EVRIEAIIGLSYR 219 (280)
T ss_dssp --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCH--HHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCH--HHHHHHHHHHHHh
Confidence 3589999999999999999999999999864332 357888888877665 8999999999998
Q ss_pred ccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHH
Q 047123 401 SLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVL 480 (579)
Q Consensus 401 ~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~ 480 (579)
... .+++.|+.++++.+ ++..|+.+|..+.... .++.|.+++++.++.++...+..+|.
T Consensus 220 ~~~-----------~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~~--------~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 220 KDK-----------RVLSVLCDELKKNT--VYDDIIEAAGELGDKT--------LLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp TCG-----------GGHHHHHHHHTSSS--CCHHHHHHHHHHCCGG--------GHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred CCH-----------hhHHHHHHHhcCcc--HHHHHHHHHHhcCchh--------hhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 743 78899999998754 8899999999987422 28889998866667777777777664
No 45
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.57 E-value=3.8e-14 Score=162.72 Aligned_cols=349 Identities=13% Similarity=0.099 Sum_probs=240.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHH----hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChh
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVA----KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDE 238 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~----~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~ 238 (579)
.++.|+..++++++..+..|+.+|..++.+.+.....-. -...++.|+++++ ++++.+|..|+.+|..+....+.
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~-~~~~~vR~~A~~aL~~~~~~~~~ 207 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFK-HSSPKIRSHAVACVNQFIISRTQ 207 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTT-CSSHHHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcccH
Confidence 689999999999999999999999999865443321100 1346788888888 89999999999999988762221
Q ss_pred hHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 047123 239 SRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAV 318 (579)
Q Consensus 239 ~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~ 318 (579)
..... -...++.+++.+.+++.+++..++++|..++........-.-.+.++.++..+++.++.++..++..+.+++..
T Consensus 208 ~~~~~-~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~ 286 (852)
T 4fdd_A 208 ALMLH-IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQ 286 (852)
T ss_dssp HHHTS-HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc
Confidence 11111 12467888899999999999999999999985322111111124778888888999999999999999999876
Q ss_pred hhhHHHHH--HcCCHHHHHHHh-----------cC-----------CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHH
Q 047123 319 EDIKAALA--EEGAVPVLVQSL-----------TS-----------SSNLAQENAADCIATLAASGEYFRLLIIQERGLQ 374 (579)
Q Consensus 319 ~~~~~~l~--~~g~v~~Lv~lL-----------~~-----------~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~ 374 (579)
...+..+. -...+|.++..+ .+ .+-.++..+..+|..++...+. .+. ...++
T Consensus 287 ~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~-~~l~~ 362 (852)
T 4fdd_A 287 PICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELL-PHILP 362 (852)
T ss_dssp TTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHH
Confidence 54443221 113456666666 22 1113688888888888753211 111 23456
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-h-h-hH
Q 047123 375 RLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSIS-D-G-NK 449 (579)
Q Consensus 375 ~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~-~-~-~~ 449 (579)
.+..++.+.+. ..++.|+.+|.+++.+ +.....+. ++++.++..+++.++.|+..+++++.+++.. . . ..
T Consensus 363 ~l~~~l~~~~~--~~R~aa~~alg~i~~~~~~~~~~~l~---~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~ 437 (852)
T 4fdd_A 363 LLKELLFHHEW--VVKESGILVLGAIAEGCMQGMIPYLP---ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD 437 (852)
T ss_dssp HHHHHHTCSSH--HHHHHHHHHHHHTTTTTHHHHGGGHH---HHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred HHHHHhcCCCH--HHHHHHHHHHHHHHhcchHHHHHHHH---HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHH
Confidence 66667766554 8999999999999987 22222333 5889999999999999999999999999821 1 1 22
Q ss_pred HHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcc-hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHh
Q 047123 450 RAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSN-RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVL 526 (579)
Q Consensus 450 ~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~-~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~ 526 (579)
..+.+.++.|++.+ .+++..+|..|+.+|.+++..... ...+. ...++.|+++++..+.. ....++.++..++
T Consensus 438 ~~~~~ll~~L~~~L-~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~~l~~~~~~-~~~~~~~ai~~l~ 511 (852)
T 4fdd_A 438 TYLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHK-NLLILYDAIGTLA 511 (852)
T ss_dssp TTHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCCHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHHHHHHhChH-HHHHHHHHHHHHH
Confidence 23333389999999 667899999999999999854222 22222 45667788888765544 3444555565554
No 46
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.56 E-value=2.2e-12 Score=127.68 Aligned_cols=254 Identities=14% Similarity=0.047 Sum_probs=196.5
Q ss_pred HhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc
Q 047123 201 AKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPEN 280 (579)
Q Consensus 201 ~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~ 280 (579)
...+.++.|+.+|+ ++++.+|..|+.+|+.+.. .+.++.|+++|+++++.++..++++|..+...++.
T Consensus 20 ~~~~~i~~L~~~L~-~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 20 CKKLNDDELFRLLD-DHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHTSCHHHHHHHTT-CSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHhhHHHHHHHHH-cCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 35678999999999 9999999999999999875 45689999999999999999999999999854332
Q ss_pred HHHHHhcCcHHHHHH-HhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123 281 AWAISAYGGVSVLIE-AFRSGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA 358 (579)
Q Consensus 281 ~~~i~~~g~i~~Lv~-ll~~~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~ 358 (579)
... .++.|.. ++.++++.++..++.+|.++.. .+... ..+++.|+.++.+.++.++..++.+|.++..
T Consensus 88 ~~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 88 EDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred chH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 111 2344442 4567899999999999999864 22111 2357889999999999999999999987643
Q ss_pred CChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHH
Q 047123 359 SGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSL 438 (579)
Q Consensus 359 ~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~a 438 (579)
.+.++.|+.++.+.+. .++..|+.+|..+.... . .+++.|+.++++.++.++..|+.+
T Consensus 158 -----------~~~~~~L~~~l~d~~~--~vr~~a~~aL~~~~~~~-------~--~~~~~L~~~l~d~~~~vR~~A~~a 215 (280)
T 1oyz_A 158 -----------KATIPLLINLLKDPNG--DVRNWAAFAININKYDN-------S--DIRDCFVEMLQDKNEEVRIEAIIG 215 (280)
T ss_dssp ------------CCHHHHHHHHTCSSH--HHHHHHHHHHHHHTCCC-------H--HHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCCCH--HHHHHHHHHHHhhccCc-------H--HHHHHHHHHhcCCCHHHHHHHHHH
Confidence 3478999999987665 89999999999885321 1 578889999999999999999999
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHH
Q 047123 439 LGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFP 518 (579)
Q Consensus 439 L~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a 518 (579)
|.++..... ++.|+.++ .++ +++..++.+|+.+.. ...++.|.+++...........+
T Consensus 216 L~~~~~~~~--------~~~L~~~l-~d~--~vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~~ 273 (280)
T 1oyz_A 216 LSYRKDKRV--------LSVLCDEL-KKN--TVYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSA 273 (280)
T ss_dssp HHHTTCGGG--------HHHHHHHH-TSS--SCCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred HHHhCCHhh--------HHHHHHHh-cCc--cHHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHHH
Confidence 999973222 88899999 433 389999999998753 35678899998765433234444
Q ss_pred HH
Q 047123 519 VM 520 (579)
Q Consensus 519 v~ 520 (579)
+.
T Consensus 274 ~~ 275 (280)
T 1oyz_A 274 ID 275 (280)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.45 E-value=6.6e-12 Score=137.82 Aligned_cols=335 Identities=14% Similarity=0.120 Sum_probs=230.9
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChh
Q 047123 159 DLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDE 238 (579)
Q Consensus 159 ~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~ 238 (579)
-.+..++.+...|.+.++.+|..|+.++..+...+++.. ...++++.|.++|. ++++.++..|+.+|..++..+++
T Consensus 118 ~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~ 193 (591)
T 2vgl_B 118 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIA-DSNPMVVANAVAALSEISESHPN 193 (591)
T ss_dssp GHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCC
Confidence 344567889999999999999999999999988766533 23578999999999 99999999999999999984443
Q ss_pred hHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-
Q 047123 239 SRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA- 317 (579)
Q Consensus 239 ~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~- 317 (579)
....-...+.+..|+..+.+.++-.+....++|..++..++.. ....++.+..++++.++.++..|+.++..+..
T Consensus 194 ~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~ 269 (591)
T 2vgl_B 194 SNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLEL 269 (591)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCS
T ss_pred ccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhc
Confidence 2100011234677888888888889999999888887432211 13456788888888999999999999999864
Q ss_pred ---ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHH
Q 047123 318 ---VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENAL 394 (579)
Q Consensus 318 ---~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~ 394 (579)
+++....+. ..+.+.|+.++. .++.++..++.+|..+....+.. +.. .+.. ++...+++..++..++
T Consensus 270 ~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~----~~~-~~~~---~~~~~~d~~~Ir~~al 339 (591)
T 2vgl_B 270 LPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEI----LKQ-EIKV---FFVKYNDPIYVKLEKL 339 (591)
T ss_dssp CCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCST----TTT-CTTT---TSCCTTSCHHHHHHHH
T ss_pred cCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHH----HHH-HHHh---heeccCChHHHHHHHH
Confidence 333333332 345677777664 78899999999999997644321 110 1111 1111122247888888
Q ss_pred HHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHhccCCCCHhHHH
Q 047123 395 LAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASCMGSLIKLMECPKPVGLQE 473 (579)
Q Consensus 395 ~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~ 473 (579)
..|.+++...+... .+..|..++.+.+.+++..++.+|.+++ ..+... ...++.|++++ ......++.
T Consensus 340 ~~L~~l~~~~nv~~-------iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~---~~~v~~Ll~ll-~~~~~~v~~ 408 (591)
T 2vgl_B 340 DIMIRLASQANIAQ-------VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA---ERCVSTLLDLI-QTKVNYVVQ 408 (591)
T ss_dssp HHHHHTCCSSTHHH-------HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH---HHHHHHHHHHH-HTCCHHHHH
T ss_pred HHHHHHCChhhHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH---HHHHHHHHHHH-cccchHHHH
Confidence 88888887655432 4555677778888888888888888888 443221 11277888888 555667777
Q ss_pred HHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhC
Q 047123 474 AATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG 527 (579)
Q Consensus 474 ~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~ 527 (579)
.+..++.++....++.+ +.++..|.+.+++......+..+++++...+.
T Consensus 409 e~i~~l~~ii~~~p~~~-----~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~ 457 (591)
T 2vgl_B 409 EAIVVIRDIFRKYPNKY-----ESIIATLCENLDSLDEPDARAAMIWIVGEYAE 457 (591)
T ss_dssp HHHHHHHHHHHHSCSSC-----CTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHCcchH-----HHHHHHHHHHHHhccCHHHHHHHHHHHHcccc
Confidence 77778888775443321 45667777777644333256666777766654
No 48
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.42 E-value=1.5e-11 Score=116.23 Aligned_cols=188 Identities=20% Similarity=0.248 Sum_probs=158.7
Q ss_pred hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccH
Q 047123 202 KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENA 281 (579)
Q Consensus 202 ~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~ 281 (579)
..+.++.|+++|+ ++++.+|..|+.+|+.+.. ...++.|++.|.++++.++..++++|..+..
T Consensus 17 ~~~~~~~L~~~L~-~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----- 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQ-DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----- 79 (211)
T ss_dssp CGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----
T ss_pred CHhHHHHHHHHHc-CCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence 3567999999999 9999999999999998876 4679999999999999999999999998863
Q ss_pred HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh
Q 047123 282 WAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGE 361 (579)
Q Consensus 282 ~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~ 361 (579)
.+.++.|+.++.++++.++..++.+|.++.. ...++.|+.++.+.++.++..++.+|.++..
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 3578999999999999999999999988753 2478899999999999999999999998843
Q ss_pred hhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047123 362 YFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGN 441 (579)
Q Consensus 362 ~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~ 441 (579)
...++.|..++.+.+. .++..|+.+|..+... .+++.|..++++.++.++..|..+|.+
T Consensus 142 --------~~~~~~L~~~l~d~~~--~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 --------ERAVEPLIKALKDEDG--WVRQSAADALGEIGGE-----------RVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp --------GGGHHHHHHHTTCSSH--HHHHHHHHHHHHHCSH-----------HHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHcCCCH--HHHHHHHHHHHHhCch-----------hHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3468888888876654 8999999999988653 678888899999999999999999999
Q ss_pred hcCC
Q 047123 442 LSIS 445 (579)
Q Consensus 442 L~~~ 445 (579)
+..+
T Consensus 201 ~~~~ 204 (211)
T 3ltm_A 201 HKSF 204 (211)
T ss_dssp ----
T ss_pred cCCC
Confidence 9843
No 49
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.38 E-value=3.3e-11 Score=112.87 Aligned_cols=185 Identities=21% Similarity=0.259 Sum_probs=161.2
Q ss_pred hCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHH
Q 047123 203 EGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAW 282 (579)
Q Consensus 203 ~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~ 282 (579)
.+..+.++++|+ ++++.+|..|+.+|..+.. .+.++.|++.|+++++.++..++.+|..+..
T Consensus 13 ~~~~~~~i~~L~-~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQ-DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp HHHHHHHHHHTT-CSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred CcchHHHHHHhc-CCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 456889999999 9999999999999998876 4679999999999999999999999998853
Q ss_pred HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh
Q 047123 283 AISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEY 362 (579)
Q Consensus 283 ~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~ 362 (579)
...++.|+.++.+.++.++..++.+|.++.. ..+++.|+.++.+.++.++..++.+|.++..
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 3578999999999999999999999998753 2478889999999999999999999998853
Q ss_pred hHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 047123 363 FRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNL 442 (579)
Q Consensus 363 ~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L 442 (579)
...++.|..++.+.+. .++..|+.+|..+... .+++.|..++++.++.++..|..+|.++
T Consensus 137 -------~~~~~~L~~~l~d~~~--~vr~~A~~aL~~~~~~-----------~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDEDG--WVRQSAADALGEIGGE-----------RVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp -------GGGHHHHHHHTTCSSH--HHHHHHHHHHHHHCSH-----------HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred -------HHHHHHHHHHHcCCCH--HHHHHHHHHHHHhCch-----------hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3568889999987654 8999999999998543 6788899999999999999999999987
Q ss_pred c
Q 047123 443 S 443 (579)
Q Consensus 443 ~ 443 (579)
.
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 5
No 50
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.36 E-value=5e-11 Score=112.54 Aligned_cols=185 Identities=22% Similarity=0.235 Sum_probs=158.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
.++.|+..|+++++.+|..|+..|..+.. .+.++.|+++|+ ++++.+|..|+.+|+.+..
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~-~~~~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALK-DEDAWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT-CSCHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHc-CCCHHHHHHHHHHHHhhCC--------
Confidence 58999999999999999999999988742 357999999999 9999999999999999876
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhH
Q 047123 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIK 322 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~ 322 (579)
.+.++.|++.|++.++.++..++++|.++.. ...++.|+.++.++++.++..++.+|.++..
T Consensus 80 ---~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 141 (211)
T 3ltm_A 80 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 141 (211)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence 4678999999999999999999999999864 3478999999999999999999999998743
Q ss_pred HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHccc
Q 047123 323 AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSL 402 (579)
Q Consensus 323 ~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~ 402 (579)
...++.|..++.+.++.++..++.+|..+.. ...++.|..++.+.++ .++..|..+|.++..
T Consensus 142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~--~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTG--FARKVAVNYLETHKS 203 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCH--HHHHHHHHHHHC---
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCH--HHHHHHHHHHHhcCC
Confidence 2478899999999999999999999999843 3357788888887765 899999999999876
Q ss_pred c
Q 047123 403 S 403 (579)
Q Consensus 403 ~ 403 (579)
.
T Consensus 204 ~ 204 (211)
T 3ltm_A 204 F 204 (211)
T ss_dssp -
T ss_pred C
Confidence 5
No 51
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.36 E-value=3.2e-11 Score=132.32 Aligned_cols=294 Identities=11% Similarity=0.110 Sum_probs=218.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
.+.++-+.|++++.+.+..++..+..+..-+.+. ..+.+.+++++. +++..++..+..++..++..+++..
T Consensus 14 e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~~e~~-- 84 (591)
T 2vgl_B 14 EIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQ-TDNLELKKLVYLYLMNYAKSQPDMA-- 84 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHSHHHH--
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcccCchHH--
Confidence 4778888999999999999988887765433211 335677888998 9999999999888888877333322
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-Chhh
Q 047123 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VEDI 321 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~~ 321 (579)
.-++..+.+-|.++++.++..|.++|+++. .++.... .++.+..++.+.++.++..|+.++.++.. +++.
T Consensus 85 ---~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-~~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~ 155 (591)
T 2vgl_B 85 ---IMAVNSFVKDCEDPNPLIRALAVRTMGCIR-VDKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM 155 (591)
T ss_dssp ---HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-SGGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC
T ss_pred ---HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-hHHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh
Confidence 234678888888999999999999999986 3333333 35778899999999999999999999976 3332
Q ss_pred HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcc
Q 047123 322 KAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLS 401 (579)
Q Consensus 322 ~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~ 401 (579)
+.+.+.++.+..+|.+.++.++..|+.+|..++..++..+......+.+..|+..+...++ ..+...++++..++
T Consensus 156 ---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~--~~q~~il~~l~~l~ 230 (591)
T 2vgl_B 156 ---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTE--WGQIFILDCLSNYN 230 (591)
T ss_dssp ---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCH--HHHHHHHHHHHTSC
T ss_pred ---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCc--hHHHHHHHHHHHhC
Confidence 2234678999999999999999999999999998664310000112345667776665554 78888888888887
Q ss_pred cchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcC----ChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHH
Q 047123 402 LSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI----SDGNKRAVASC-MGSLIKLMECPKPVGLQEAAT 476 (579)
Q Consensus 402 ~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~----~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~ 476 (579)
..+... .. .+++.+..++++.++.|+..|+.++..+.. +++..+.+.+. .+.|+.++ . .+..+|..++
T Consensus 231 ~~~~~~---~~--~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~-~d~~vr~~aL 303 (591)
T 2vgl_B 231 PKDDRE---AQ--SICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-S-GEPEVQYVAL 303 (591)
T ss_dssp CCSHHH---HH--HHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-T-SCHHHHHHHH
T ss_pred CCChHH---HH--HHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-c-CCccHHHHHH
Confidence 552211 12 467778888889999999999999999872 45655555555 78888777 4 5789999999
Q ss_pred HHHHHhhcCC
Q 047123 477 DAVLSLLTVR 486 (579)
Q Consensus 477 ~aL~~L~~~~ 486 (579)
.+|..+....
T Consensus 304 ~~l~~i~~~~ 313 (591)
T 2vgl_B 304 RNINLIVQKR 313 (591)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998643
No 52
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.35 E-value=9.1e-11 Score=109.83 Aligned_cols=183 Identities=22% Similarity=0.246 Sum_probs=159.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
..+.++..|+++++.+|..|+..|..+.. .+.++.|+++|+ ++++.+|..|+.+|+.+..
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~-~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALK-DEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC--------
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHc-CCCHHHHHHHHHHHHhhCC--------
Confidence 57889999999999999999999988752 356999999999 9999999999999999876
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhH
Q 047123 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIK 322 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~ 322 (579)
...++.|+..|.+.++.++..++++|.++.. ...++.|+.++.+.++.++..++.+|.++..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence 4678999999999999999999999999864 3478999999999999999999999998753
Q ss_pred HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcc
Q 047123 323 AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLS 401 (579)
Q Consensus 323 ~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~ 401 (579)
...++.|+.++.+.++.++..++.+|..+.. ...++.|..++.+.+. .++..|..+|..+.
T Consensus 137 -----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~--~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTG--FARKVAVNYLETHK 197 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCH--HHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCH--HHHHHHHHHHHHHH
Confidence 3578899999999999999999999999832 2357888888877665 89999999998875
No 53
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.29 E-value=1.1e-09 Score=120.69 Aligned_cols=291 Identities=13% Similarity=0.093 Sum_probs=186.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
.....+..+++.+.+.|.-.--.+..++..+++.... .++.|.+-|+ ++++.+|..|+++|+++.. . +
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~-~~n~~vr~lAL~~L~~i~~-~-~---- 138 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLN-HSTQFVQGLALCTLGCMGS-S-E---- 138 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHS-CSSSHHHHHHHHHHHHHCC-H-H----
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcC-CCCHhHHHHHHHHHHhcCC-H-H----
Confidence 4566778888999999988888888888776553222 3778888888 9999999999999999985 2 2
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChh-
Q 047123 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVED- 320 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~- 320 (579)
+. ...++.+.+.|.+.++.+|..|+.++.++.. +++.. .+.++.+..++.+.++.++..|+.+|..++....
T Consensus 139 ~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 139 MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence 21 3558889999999999999999999999984 44432 2566778888889999999999999999987532
Q ss_pred hHHHHHHcCCHHHHHHHhcC---------------CCHHHHHHHHHHHHHHhcCChhhHHHHHh----------------
Q 047123 321 IKAALAEEGAVPVLVQSLTS---------------SSNLAQENAADCIATLAASGEYFRLLIIQ---------------- 369 (579)
Q Consensus 321 ~~~~l~~~g~v~~Lv~lL~~---------------~~~~v~~~a~~~L~~La~~~~~~r~~l~~---------------- 369 (579)
....+ ...+|.++.+|.+ .++-.+...+.+|..++..++.....+.+
T Consensus 213 ~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 290 (618)
T 1w63_A 213 MLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVG 290 (618)
T ss_dssp HHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHH
T ss_pred HHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchH
Confidence 22222 2577877776642 36778888888888888765442211000
Q ss_pred ---------------------cCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCC
Q 047123 370 ---------------------ERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGN 428 (579)
Q Consensus 370 ---------------------~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~ 428 (579)
..+++.|..++.+.++ .++..|+.+|..++... ..++. .....++..+.+.+
T Consensus 291 ~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~--~vr~~aL~~L~~i~~~~--p~~~~---~~~~~i~~~l~d~d 363 (618)
T 1w63_A 291 NAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDK--NIRYVALTSLLKTVQTD--HNAVQ---RHRSTIVDCLKDLD 363 (618)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSST--TTHHHHHHHHHHHHHHH--HHHHG---GGHHHHHHGGGSSC
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHHhhC--HHHHH---HHHHHHHHHccCCC
Confidence 0123334444443332 44555555554444320 01111 23344555556666
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123 429 VLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTV 485 (579)
Q Consensus 429 ~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~ 485 (579)
..++..|..+|..++....... + ++.|...+ .+.+.+++..++.+++.++..
T Consensus 364 ~~Ir~~alelL~~l~~~~nv~~-i---v~eL~~~l-~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 364 VSIKRRAMELSFALVNGNNIRG-M---MKELLYFL-DSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHHHHHHHHHHHCCSSSTHH-H---HHHHHHHH-HHCCHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHcccccHHH-H---HHHHHHHH-HhCCHHHHHHHHHHHHHHHHH
Confidence 6666666666666653222111 1 34444444 334566666666666666654
No 54
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.26 E-value=1.7e-10 Score=122.06 Aligned_cols=347 Identities=11% Similarity=0.064 Sum_probs=233.3
Q ss_pred HHHHHHHHhccC--CHHHHHHHHHHHHHHhccChhhHH--------HH---HhhCcHHHHHHhhccCCCHHHHHHHHHHH
Q 047123 163 FIRDIFTRLQIG--GVEFKKKALESLLQLLKDDDKSAA--------VV---AKEGNVGYLISLLDFHHQSSIREQAVLAL 229 (579)
Q Consensus 163 ~v~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~~~~--------~i---~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL 229 (579)
++..|+..+.++ ++.+|..|+..|.++......... .+ .....-..|+..|. ++++.+ ..++.+|
T Consensus 36 ~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~-~~~~~v-~~~~~~i 113 (462)
T 1ibr_B 36 FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLG-TETYRP-SSASQCV 113 (462)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTT-CCCSSS-CSHHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhC-CCCchh-hHHHHHH
Confidence 455666777664 688999999999998754321110 00 12234455777787 777777 8889999
Q ss_pred HHhhccChhhHHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhcCC--CccHHHHHhcCcHHHHHHHhcCC--CHH
Q 047123 230 SIIVSANDESRKIVFEEGGLGPLLRILETG--SMPLKEKAAIGVEAITTD--PENAWAISAYGGVSVLIEAFRSG--TAL 303 (579)
Q Consensus 230 ~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~ll~~~--~~~ 303 (579)
..++. ...-.. .-.+.++.|+..+.++ ++.+++.++.+|..++.. ++.-... -...++.++..+.+. ++.
T Consensus 114 ~~ia~-~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~ 189 (462)
T 1ibr_B 114 AGIAC-AEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNN 189 (462)
T ss_dssp HHHHH-HHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHH
T ss_pred HHHHH-Hhcccc--ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHH
Confidence 99987 321110 1146789999999998 899999999999999842 2211111 123678888888887 789
Q ss_pred HHHHHHHHHHHhhcC-hhhH-HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh-HHHHHhcCcHHHHHHhh
Q 047123 304 TQSHAVGAIRNIAAV-EDIK-AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF-RLLIIQERGLQRLMHLI 380 (579)
Q Consensus 304 ~~~~a~~aL~nLs~~-~~~~-~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~-r~~l~~~g~i~~Lv~ll 380 (579)
++..++.++.++... .++- ......-.++.+...+.+.++.++..++.+|..++...+.. ... ...+.++.++..+
T Consensus 190 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~-~~~~l~~~~~~~~ 268 (462)
T 1ibr_B 190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETY-MGPALFAITIEAM 268 (462)
T ss_dssp HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTT-TTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 999999999987542 1111 00111114666667778888999999999999998643321 111 1115667777777
Q ss_pred ccCCCChHHHHHHHHHHHHcccch-h----------------------HHHHHhhcCcHHHHHHHHHhcC-------CHH
Q 047123 381 QDSTSSIVTVENALLAISSLSLSD-S----------------------AARILSSTTSFIIQLGEFIKRG-------NVL 430 (579)
Q Consensus 381 ~~~~~~~~~~~~A~~aL~~L~~~~-~----------------------~~~l~~~~~g~i~~L~~lL~~~-------~~~ 430 (579)
.+.++ .++..++..+..++... . ....+. ..++.++..+... +..
T Consensus 269 ~~~~~--~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~p~l~~~l~~~d~d~~~~~~~ 343 (462)
T 1ibr_B 269 KSDID--EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ---YLVPILTQTLTKQDENDDDDDWN 343 (462)
T ss_dssp HCSSH--HHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHH---HHHHHHHHHTTCCCSSCCTTCCS
T ss_pred cCCch--HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhh---hccHHHHHHHHhcccccccccch
Confidence 66554 89999999988887642 1 111111 3566666666432 347
Q ss_pred HHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCc-c-hhHHHhhcccHHHHHhhc
Q 047123 431 LQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVRS-N-RKELVRDEKSVMRLMQML 506 (579)
Q Consensus 431 v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~-~-~~~~~~~~~~i~~Lv~lL 506 (579)
++..|..+|..++ ..++ .+... ++.+...+ .+.+..+|+.|+.+|+.++.... . ....+ ...++.++++|
T Consensus 344 ~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l 417 (462)
T 1ibr_B 344 PCKAAGVCLMLLATCCED---DIVPHVLPFIKEHI-KNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELM 417 (462)
T ss_dssp HHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHh
Confidence 8999999999998 2221 33334 77888888 67789999999999999996432 1 12222 45788899999
Q ss_pred CCCchhhhhHHHHHHHHHHhCC
Q 047123 507 DPKNEALNKKFPVMVTAAVLGG 528 (579)
Q Consensus 507 ~~~~~~~~k~~av~~L~~L~~~ 528 (579)
.++++. ++..++.+|..++..
T Consensus 418 ~d~~~~-Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 418 KDPSVV-VRDTAAWTVGRICEL 438 (462)
T ss_dssp GCSCHH-HHHHHHHHHHHHHHH
T ss_pred cCCCHH-HHHHHHHHHHHHHHh
Confidence 888777 899999999988754
No 55
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.25 E-value=5.1e-09 Score=115.36 Aligned_cols=331 Identities=9% Similarity=0.071 Sum_probs=235.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh
Q 047123 160 LVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDES 239 (579)
Q Consensus 160 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~ 239 (579)
+...+.++-+.+++++...|..++..|..+..-+... ..+....++++. +++...+.-..-++..++..+++.
T Consensus 32 i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~------~~~~~~vik~~~-s~~~~~Krl~Yl~~~~~~~~~~e~ 104 (618)
T 1w63_A 32 IQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPA------HFGQLECLKLIA-SQKFTDKRIGYLGAMLLLDERQDV 104 (618)
T ss_dssp HHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCC------GGGHHHHHHHHH-SSSHHHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCC------cchHHHHHHHHc-CCchHHHHHHHHHHHHHhCCCcHH
Confidence 4445667777888888778888888777764332211 235666778888 999998888888888888734332
Q ss_pred HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-C
Q 047123 240 RKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-V 318 (579)
Q Consensus 240 ~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~ 318 (579)
.. -++..|.+-|.++++.++..|.++|+++.. ++. . ...++.+..++.+.++.++..|+.++.++.. +
T Consensus 105 ~~-----l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~~----~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~ 173 (618)
T 1w63_A 105 HL-----LMTNCIKNDLNHSTQFVQGLALCTLGCMGS-SEM----C-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV 173 (618)
T ss_dssp HH-----HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HHH----H-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC
T ss_pred HH-----HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HHH----H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC
Confidence 22 237788899999999999999999999984 222 1 3456888899999999999999999999976 4
Q ss_pred hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcc-------------CCC
Q 047123 319 EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQD-------------STS 385 (579)
Q Consensus 319 ~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~-------------~~~ 385 (579)
++.. .+.++.+..++.+.++.++..|+.+|..++..++.....+ ...++.++++|.. +..
T Consensus 174 p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~ 246 (618)
T 1w63_A 174 PELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGIS 246 (618)
T ss_dssp GGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSS
T ss_pred hHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCC
Confidence 4422 2577788888999999999999999999997654422222 3567777776653 122
Q ss_pred ChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHh------cCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 047123 386 SIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIK------RGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSL 459 (579)
Q Consensus 386 ~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~------~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~L 459 (579)
++..+...+++|..++..+... .. .+...|..++. +.+..+...|+.++..+..+++.+. .+++.|
T Consensus 247 ~~~~q~~il~~L~~l~~~~~~~---~~--~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~---~a~~~L 318 (618)
T 1w63_A 247 DPFLQVRILRLLRILGRNDDDS---SE--AMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV---LAINIL 318 (618)
T ss_dssp CHHHHHHHHHHHHHHTTTCHHH---HH--TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH---HHHHHH
T ss_pred CChHHHHHHHHHHHhCCCCHHH---HH--HHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH---HHHHHH
Confidence 4578888999999988762110 11 34444555543 2345788889999988875544332 237788
Q ss_pred HHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123 460 IKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS 530 (579)
Q Consensus 460 v~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~ 530 (579)
.+++ .++++.+|..|..+|..++...+ ..+ ......++.++.+++.. +|..++.++..++...+
T Consensus 319 ~~~L-~~~d~~vr~~aL~~L~~i~~~~p---~~~--~~~~~~i~~~l~d~d~~-Ir~~alelL~~l~~~~n 382 (618)
T 1w63_A 319 GRFL-LNNDKNIRYVALTSLLKTVQTDH---NAV--QRHRSTIVDCLKDLDVS-IKRRAMELSFALVNGNN 382 (618)
T ss_dssp HHHH-TCSSTTTHHHHHHHHHHHHHHHH---HHH--GGGHHHHHHGGGSSCHH-HHHHHHHHHHHHCCSSS
T ss_pred HHHH-hCCCCchHHHHHHHHHHHHhhCH---HHH--HHHHHHHHHHccCCChh-HHHHHHHHHHHHccccc
Confidence 8888 66678999999999999886432 233 23456788888877666 88889998888887654
No 56
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.24 E-value=1.1e-09 Score=125.40 Aligned_cols=375 Identities=14% Similarity=0.079 Sum_probs=245.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh---
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDES--- 239 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~--- 239 (579)
.++.+...+++++++.|..++.+|..++...+...........++.+...+. +.+..++..|+.++..++. ....
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~vr~~a~~~l~~l~~-~~~~~~~ 302 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMK-SPNDKVASMTVEFWSTICE-EEIDIAY 302 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTT-CSSHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHH-HHHhhhh
Confidence 5666777788899999999999999998755543332223367778888888 8899999999999999887 3211
Q ss_pred ---------------HHHHHhcCCHHHHHHHHccC-------CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHh
Q 047123 240 ---------------RKIVFEEGGLGPLLRILETG-------SMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAF 297 (579)
Q Consensus 240 ---------------~~~i~~~g~l~~Lv~lL~~~-------~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll 297 (579)
....+ ...++.++..|... +..++..+..+|..++..-.. .+ -...++.+...+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~--~~-~~~l~~~l~~~l 378 (861)
T 2bpt_A 303 ELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--HI-LEPVLEFVEQNI 378 (861)
T ss_dssp HHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--GG-HHHHHHHHHHHT
T ss_pred hhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH--hH-HHHHHHHHHHHc
Confidence 11111 34677888887642 357889999999998842110 01 123456666777
Q ss_pred cCCCHHHHHHHHHHHHHhhcChh--hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh-HHHHHhcCcHH
Q 047123 298 RSGTALTQSHAVGAIRNIAAVED--IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYF-RLLIIQERGLQ 374 (579)
Q Consensus 298 ~~~~~~~~~~a~~aL~nLs~~~~--~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~-r~~l~~~g~i~ 374 (579)
.+.+...++.++.++.+++.... .-.... ...++.++..+.+.++.++..+++++..++..-... ...-.-...++
T Consensus 379 ~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~ 457 (861)
T 2bpt_A 379 TADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQ 457 (861)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHH
Confidence 78889999999999999986432 111122 247888889999999999999999999987531100 00000134567
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHHcccc-h-----hHHHHHhhcCcHHHHHHHHHhcCC--HHHHHHHHHHHHHhc--C
Q 047123 375 RLMHLIQDSTSSIVTVENALLAISSLSLS-D-----SAARILSSTTSFIIQLGEFIKRGN--VLLQQVSSSLLGNLS--I 444 (579)
Q Consensus 375 ~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~-----~~~~l~~~~~g~i~~L~~lL~~~~--~~v~~~A~~aL~~L~--~ 444 (579)
.++..+.+. +.++..|+.+|.+++.. . .....+. ..++.|+..+.+.+ ..++..+..++..+. .
T Consensus 458 ~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~---~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~ 531 (861)
T 2bpt_A 458 ACLIGLQDH---PKVATNCSWTIINLVEQLAEATPSPIYNFYP---ALVDGLIGAANRIDNEFNARASAFSALTTMVEYA 531 (861)
T ss_dssp HHHHHHTSC---HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHH---HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC
T ss_pred HHHHHhccC---hHHHHHHHHHHHHHHHhcccccchhhHHHHH---HHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHc
Confidence 777777654 48999999999998764 2 1112222 46777888887543 789999999999998 4
Q ss_pred ChhhHHHHHHHHHHHHHhccC--------------CCCHhHHHHHHHHHHHhhcCCcc-hhHHHhhcccHHHHHhhcCCC
Q 047123 445 SDGNKRAVASCMGSLIKLMEC--------------PKPVGLQEAATDAVLSLLTVRSN-RKELVRDEKSVMRLMQMLDPK 509 (579)
Q Consensus 445 ~~~~~~~i~~~v~~Lv~lL~~--------------~~~~~v~~~a~~aL~~L~~~~~~-~~~~~~~~~~i~~Lv~lL~~~ 509 (579)
.++....+.+-++.+++.+.. .....++..++.+|.+++..... ...+. ...++.+++++...
T Consensus 532 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~ 609 (861)
T 2bpt_A 532 TDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLFFRLLEKK 609 (861)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHHHHST
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHHccC
Confidence 444444444436666665521 11345788899999999865332 11222 34566777888776
Q ss_pred ch-hhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhccCCc
Q 047123 510 NE-ALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVP 555 (579)
Q Consensus 510 ~~-~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~~ 555 (579)
+. . .++.++.++..++.....+....+ ...++.|.+.+..+++
T Consensus 610 ~~~~-v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~ 653 (861)
T 2bpt_A 610 DSAF-IEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDS 653 (861)
T ss_dssp TGGG-THHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTS
T ss_pred CCCc-HHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhccccH
Confidence 54 4 677777777777643321133322 2266777777655544
No 57
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.23 E-value=3.3e-10 Score=119.83 Aligned_cols=370 Identities=14% Similarity=0.046 Sum_probs=245.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCC--CHHHHHHHHHHHHHhhccChhhHH
Q 047123 164 IRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHH--QSSIREQAVLALSIIVSANDESRK 241 (579)
Q Consensus 164 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~--~~~~~~~A~~aL~~La~~~~~~~~ 241 (579)
+..++..+.+.+.+.|..|-..|..+...+ ..+++..|+.++. ++ ++.+|..|+..|.++.........
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~-~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLA-NPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHH-cCCCChHHHHHHHHHHHHhccccchHHH
Confidence 456677777889999999999998765321 2456778888887 54 689999999999998652211000
Q ss_pred --------HH---HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC--CccHHHHHhcCcHHHHHHHhcCC--CHHHHH
Q 047123 242 --------IV---FEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD--PENAWAISAYGGVSVLIEAFRSG--TALTQS 306 (579)
Q Consensus 242 --------~i---~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~ 306 (579)
.+ ....+-..++..|.+.+..+ ..++.++..++.. ++.. -.+.++.|+..+.++ ++.++.
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~----w~~ll~~L~~~l~~~~~~~~~r~ 148 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQ----WPELIPQLVANVTNPNSTEHMKE 148 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTC----CTTHHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccc----cHHHHHHHHHHhccCCCCHHHHH
Confidence 00 11223445777788877777 8889999998843 2111 256889999999988 899999
Q ss_pred HHHHHHHHhhcC--hhhHHHHHHcCCHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCChhhH-HHHHhcCcHHHHHHhhc
Q 047123 307 HAVGAIRNIAAV--EDIKAALAEEGAVPVLVQSLTSS--SNLAQENAADCIATLAASGEYFR-LLIIQERGLQRLMHLIQ 381 (579)
Q Consensus 307 ~a~~aL~nLs~~--~~~~~~l~~~g~v~~Lv~lL~~~--~~~v~~~a~~~L~~La~~~~~~r-~~l~~~g~i~~Lv~ll~ 381 (579)
.++.+|..++.. ++.-.... ...++.++.++.+. ++.++..++.++.++...-...- ......-.++.+...+.
T Consensus 149 ~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 227 (462)
T 1ibr_B 149 STLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ 227 (462)
T ss_dssp HHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 999999998752 22111111 13677888888877 78999999999999764321100 00011113555555555
Q ss_pred cCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCh-------------
Q 047123 382 DSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISD------------- 446 (579)
Q Consensus 382 ~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~------------- 446 (579)
+.+ ..++..++.+|..++.. +.....+.. ++++.++..+++.++.++..+...+..++...
T Consensus 228 ~~~--~~vr~~~~~~l~~l~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 303 (462)
T 1ibr_B 228 CPD--TRVRVAALQNLVKIMSLYYQYMETYMGP--ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303 (462)
T ss_dssp CSS--HHHHHHHHHHHHHHHHHCGGGCTTTTTT--THHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCS
T ss_pred CCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 444 48999999999998865 222222332 57777788888899999999999988887321
Q ss_pred ------hhHHHH---HHH-HHHHHHhccC------CCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCc
Q 047123 447 ------GNKRAV---ASC-MGSLIKLMEC------PKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKN 510 (579)
Q Consensus 447 ------~~~~~i---~~~-v~~Lv~lL~~------~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~ 510 (579)
.....+ ... ++.+++.+.+ +++..+|..|+.+|..++..... .+. ...++.+.+.+.+.+
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~--~~~~~~l~~~l~~~~ 379 (462)
T 1ibr_B 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV--PHVLPFIKEHIKNPD 379 (462)
T ss_dssp SSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH--HHHHHHHHHHTTCSS
T ss_pred CCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--HHH--HHHHHHHHHHhcCCC
Confidence 001111 122 7888887732 23457899999999999875441 222 345677778888776
Q ss_pred hhhhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhccCCchHH
Q 047123 511 EALNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAK 558 (579)
Q Consensus 511 ~~~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~~~ak 558 (579)
.. .|..++.++..++.+...+.-+..+ ..+++.|.+++.++++..+
T Consensus 380 ~~-~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr 425 (462)
T 1ibr_B 380 WR-YRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVR 425 (462)
T ss_dssp HH-HHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHH
T ss_pred hH-HHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHH
Confidence 66 8899999999998644311111111 5688999999988777554
No 58
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.20 E-value=2.4e-09 Score=122.72 Aligned_cols=348 Identities=11% Similarity=0.042 Sum_probs=233.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCC--CHHHHHHHHHHHHHhhccC-hhhHH
Q 047123 165 RDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHH--QSSIREQAVLALSIIVSAN-DESRK 241 (579)
Q Consensus 165 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~--~~~~~~~A~~aL~~La~~~-~~~~~ 241 (579)
..++..|.+.++.. ..++.++..++....... .-...++.|+..+. ++ ++.+++.++.++..++... ++.-.
T Consensus 93 ~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~---~w~~ll~~l~~~l~-~~~~~~~~r~~al~~l~~l~~~~~~~~~~ 167 (876)
T 1qgr_A 93 NYVLHTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVT-NPNSTEHMKESTLEAIGYICQDIDPEQLQ 167 (876)
T ss_dssp HHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHH-CTTCCHHHHHHHHHHHHHHHHHSCHHHHG
T ss_pred HHHHHHhCCCcHHH-HHHHHHHHHHHHhhCccc---ccHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHhcCHhhHH
Confidence 44667777776666 777888887765321000 02567899999998 88 8999999999999998722 11100
Q ss_pred HHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhcCC-Ccc-HHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 047123 242 IVFEEGGLGPLLRILETG--SMPLKEKAAIGVEAITTD-PEN-AWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA 317 (579)
Q Consensus 242 ~i~~~g~l~~Lv~lL~~~--~~~v~~~aa~~L~~Ls~~-~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~ 317 (579)
. .-...++.+.+.+.++ +..++..++.++.++... ..+ .........++.+...+.+.+..++..++.+|..+..
T Consensus 168 ~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~ 246 (876)
T 1qgr_A 168 D-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS 246 (876)
T ss_dssp G-GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred h-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 0 0124567788888776 689999999999998742 111 0000111256777778888889999999999998876
Q ss_pred -ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhH------------------HHH--HhcCcHHHH
Q 047123 318 -VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFR------------------LLI--IQERGLQRL 376 (579)
Q Consensus 318 -~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r------------------~~l--~~~g~i~~L 376 (579)
.+..-........++.++..+.+.++.++..++.++..++....... ..+ .-...++.+
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 326 (876)
T 1qgr_A 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326 (876)
T ss_dssp HSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHH
Confidence 33221222233678888888888889999999999998875311000 000 002345666
Q ss_pred HHhhccC-----CCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--Chh-h
Q 047123 377 MHLIQDS-----TSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI--SDG-N 448 (579)
Q Consensus 377 v~ll~~~-----~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~--~~~-~ 448 (579)
++.+... +.+..++..|..+|..++..-. ..++. .+++.+...+.+.+..+|..|+.++..++. .++ .
T Consensus 327 l~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~---~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~ 402 (876)
T 1qgr_A 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVP---HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL 402 (876)
T ss_dssp HHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG-GGGHH---HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHH
T ss_pred HHHhhcccccccccccHHHHHHHHHHHHHHHHCc-HhhHH---HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHH
Confidence 6766432 1223688899999998887611 12222 466777778888899999999999999993 323 3
Q ss_pred HHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcch---hHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHH
Q 047123 449 KRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNR---KELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAV 525 (579)
Q Consensus 449 ~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~---~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L 525 (579)
...+.+.++.+++.+ .+.+..+|..|+.+|++++...... .... ...++.|++.|.+. +. ++..++.++..+
T Consensus 403 ~~~~~~~l~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~~-~~-v~~~a~~al~~l 477 (876)
T 1qgr_A 403 KPLVIQAMPTLIELM-KDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSAE-PR-VASNVCWAFSSL 477 (876)
T ss_dssp HHHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTSC-HH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcCC-HH-HHHHHHHHHHHH
Confidence 333333399999999 7778999999999999998753321 1222 35667888888764 44 677888888777
Q ss_pred hC
Q 047123 526 LG 527 (579)
Q Consensus 526 ~~ 527 (579)
+.
T Consensus 478 ~~ 479 (876)
T 1qgr_A 478 AE 479 (876)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 59
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.18 E-value=2.9e-09 Score=121.83 Aligned_cols=333 Identities=12% Similarity=0.129 Sum_probs=223.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhccCh-hhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh-
Q 047123 162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDD-KSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDES- 239 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~- 239 (579)
..++.+...+++.++..|..|+.++..++.... +...... ...++.|+..++ ++++.+|..++.+|+.++......
T Consensus 369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~ 446 (861)
T 2bpt_A 369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMN-DQSLQVKETTAWCIGRIADSVAESI 446 (861)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHhhhhc
Confidence 345566677788899999999999999986542 3222222 357889999998 899999999999999998721110
Q ss_pred -HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc--cHHHHH--hcCcHHHHHHHhcCCC--HHHHHHHHHHH
Q 047123 240 -RKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPE--NAWAIS--AYGGVSVLIEAFRSGT--ALTQSHAVGAI 312 (579)
Q Consensus 240 -~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~--~~~~i~--~~g~i~~Lv~ll~~~~--~~~~~~a~~aL 312 (579)
... .-...++.++..+++. +.++..++++|.+++..-. ....+. -...++.|+..+.+.+ +.++..++.++
T Consensus 447 ~~~~-~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 447 DPQQ-HLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp CTTT-THHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence 000 1124578888888775 8999999999999874210 000111 1345788888887543 68899999999
Q ss_pred HHhhcC--hhhHHHHHHcCCHHHHHHHhcCC---------------CHHHHHHHHHHHHHHhcCChh-hHHHHHhcCcHH
Q 047123 313 RNIAAV--EDIKAALAEEGAVPVLVQSLTSS---------------SNLAQENAADCIATLAASGEY-FRLLIIQERGLQ 374 (579)
Q Consensus 313 ~nLs~~--~~~~~~l~~~g~v~~Lv~lL~~~---------------~~~v~~~a~~~L~~La~~~~~-~r~~l~~~g~i~ 374 (579)
..+... ++....+. ..++.++..+... ...++..++.+|.+++..-+. .... -...++
T Consensus 525 ~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~l~~ 600 (861)
T 2bpt_A 525 TTMVEYATDTVAETSA--SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV--ADMLMG 600 (861)
T ss_dssp HHHHHHCCGGGHHHHH--HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG--HHHHHH
T ss_pred HHHHHHcchhhHHHHH--HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHHHH
Confidence 988762 22222222 3566666666421 345778899999988753322 1110 124567
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHH
Q 047123 375 RLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKR 450 (579)
Q Consensus 375 ~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~ 450 (579)
.++..+..... +.+++.++.++..++.. ......+. .+++.+...++..++.++..+..++..++ ..+....
T Consensus 601 ~l~~~l~~~~~-~~v~~~~~~~l~~l~~~~~~~~~~~l~---~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 676 (861)
T 2bpt_A 601 LFFRLLEKKDS-AFIEDDVFYAISALAASLGKGFEKYLE---TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRR 676 (861)
T ss_dssp HHHHHHHSTTG-GGTHHHHHHHHHHHHHHHGGGGHHHHH---HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHH
T ss_pred HHHHHHccCCC-CcHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccc
Confidence 77777776542 16889999999988876 33344444 38888999998888899999999999998 3344444
Q ss_pred HHHHHHHHHHHhccCC-CCHhHHHHHHHHHHHhhcCC-cchhHHHhhcccHHHHHhhcCC
Q 047123 451 AVASCMGSLIKLMECP-KPVGLQEAATDAVLSLLTVR-SNRKELVRDEKSVMRLMQMLDP 508 (579)
Q Consensus 451 ~i~~~v~~Lv~lL~~~-~~~~v~~~a~~aL~~L~~~~-~~~~~~~~~~~~i~~Lv~lL~~ 508 (579)
.+..-++.+++.+++. .+.+++..+..+++.++... +....++ ...++.+++.+..
T Consensus 677 ~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l--~~~l~~l~~~~~~ 734 (861)
T 2bpt_A 677 YSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYL--NDIMALCVAAQNT 734 (861)
T ss_dssp HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHHhc
Confidence 4433388888888443 24789999999999998643 2333333 3456777777764
No 60
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.18 E-value=4.9e-09 Score=120.14 Aligned_cols=350 Identities=15% Similarity=0.090 Sum_probs=234.0
Q ss_pred HHHHHHHHhccC--CHHHHHHHHHHHHHHhccC-hhhHHHHHhhCcHHHHHHhhccCC--CHHHHHHHHHHHHHhhccCh
Q 047123 163 FIRDIFTRLQIG--GVEFKKKALESLLQLLKDD-DKSAAVVAKEGNVGYLISLLDFHH--QSSIREQAVLALSIIVSAND 237 (579)
Q Consensus 163 ~v~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~LL~~~~--~~~~~~~A~~aL~~La~~~~ 237 (579)
.++.++..+.++ ++..|..++.+|..++..- ++.. .-.....++.+.+.+. ++ +..+|..|+.++..+....+
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~~ll~~l~~~l~-~~~~~~~vr~~a~~~l~~~~~~~~ 206 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQGMR-KEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHH-GGGHHHHHHHHHHHHS-TTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhH-HhHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 688899999998 9999999999999998642 2210 0012445777888887 66 68999999999998875222
Q ss_pred hhH-HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 047123 238 ESR-KIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNI 315 (579)
Q Consensus 238 ~~~-~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL 315 (579)
..- ........++.+...+.+.+.+++..++.+|..+.. .++.-........++.++..+.+.++.++..++..+.++
T Consensus 207 ~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l 286 (876)
T 1qgr_A 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 111 111112256777777778889999999999999984 333222223346788888888888889999999988888
Q ss_pred hcChhh-----HH--------------HH--HHcCCHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcCChhhHHHH
Q 047123 316 AAVEDI-----KA--------------AL--AEEGAVPVLVQSLTS-------SSNLAQENAADCIATLAASGEYFRLLI 367 (579)
Q Consensus 316 s~~~~~-----~~--------------~l--~~~g~v~~Lv~lL~~-------~~~~v~~~a~~~L~~La~~~~~~r~~l 367 (579)
+..... .. .. .-...++.++..+.. .+..++..+..+|..++...+. .+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~ 363 (876)
T 1qgr_A 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DI 363 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GG
T ss_pred HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hh
Confidence 653210 00 00 002346667777742 2346888899999888753211 11
Q ss_pred HhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-h--hHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-
Q 047123 368 IQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-D--SAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS- 443 (579)
Q Consensus 368 ~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~--~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~- 443 (579)
. ...++.+...+.+.+. .+++.|+.++..++.. . .....+. .+++.++..+.+.++.++..|++++.+++
T Consensus 364 ~-~~~l~~l~~~l~~~~~--~~r~~a~~~l~~i~~~~~~~~~~~~~~---~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~ 437 (876)
T 1qgr_A 364 V-PHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVI---QAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (876)
T ss_dssp H-HHHHHHHHHHTTCSSH--HHHHHHHHHHHHTSSSSCHHHHHHHHH---HHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHccCCCh--HHHHHHHHHHHHHHcCCCHHHHHHHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 1 2345555566665544 8999999999999986 2 2333443 58899999999999999999999999999
Q ss_pred CChh---hHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCc---------------chhHHHhhcccHHHHHhh
Q 047123 444 ISDG---NKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRS---------------NRKELVRDEKSVMRLMQM 505 (579)
Q Consensus 444 ~~~~---~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~---------------~~~~~~~~~~~i~~Lv~l 505 (579)
..+. ....+...++.|++.+ .+ +..++..++.+|.+++.... .....+ ...++.|++.
T Consensus 438 ~~~~~~~~~~~l~~~l~~l~~~l-~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~ 513 (876)
T 1qgr_A 438 LLPEAAINDVYLAPLLQCLIEGL-SA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLET 513 (876)
T ss_dssp HCGGGTSSTTTHHHHHHHHHHHT-TS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHH
T ss_pred hCchhcccHHHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHH
Confidence 3222 2233434488999999 44 38899999999999985421 111222 3466778888
Q ss_pred cCCCc--hhhhhHHHHHHHHHHhC
Q 047123 506 LDPKN--EALNKKFPVMVTAAVLG 527 (579)
Q Consensus 506 L~~~~--~~~~k~~av~~L~~L~~ 527 (579)
+...+ ....+..++.++..++.
T Consensus 514 l~~~~~~~~~~r~~~~~~l~~l~~ 537 (876)
T 1qgr_A 514 TDRPDGHQNNLRSSAYESLMEIVK 537 (876)
T ss_dssp TTSCSSCSTTHHHHHHHHHHHHHH
T ss_pred HhCcCcchhhHHHHHHHHHHHHHH
Confidence 87543 12255566666666654
No 61
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.14 E-value=8.7e-10 Score=131.43 Aligned_cols=347 Identities=15% Similarity=0.165 Sum_probs=237.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
.+..++..+.+.|.+.|..|...|.+....+......-.....++.|++.|. +.++.+|..|+.+|+.++...++ ..
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~--~~ 83 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKE--YQ 83 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCH--HH
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCH--HH
Confidence 5788999999999999999999998876433110000012245788889998 99999999999999999873332 11
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC--CCcc----HHHHHhcCcHHHHHHHhc-CCCHHHHHHHHHHHHHh
Q 047123 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT--DPEN----AWAISAYGGVSVLIEAFR-SGTALTQSHAVGAIRNI 315 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~--~~~~----~~~i~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nL 315 (579)
+ ...++.++..+.+++..+|..++.+|..++. .++. ...-.....++.|+..+. ++++.++..++.++..+
T Consensus 84 ~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 84 V--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp H--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 1 2357788888888888899999999999883 2210 011122457899999998 57889999999999988
Q ss_pred hcC--hhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHH
Q 047123 316 AAV--EDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENA 393 (579)
Q Consensus 316 s~~--~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A 393 (579)
+.. +.....+ ...++.++..+.+.++.++..++.+|..++...+. .+ -...++.++..+..... ...+..+
T Consensus 162 ~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~-~~~r~~a 234 (1230)
T 1u6g_C 162 LSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDS-MSTTRTY 234 (1230)
T ss_dssp HHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCS-SCSCTTH
T ss_pred HHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCc-hhHHHHH
Confidence 741 1111111 23566777778888899999999999999875432 11 23457888887766542 2567778
Q ss_pred HHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHhccCC----
Q 047123 394 LLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASCMGSLIKLMECP---- 466 (579)
Q Consensus 394 ~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~v~~Lv~lL~~~---- 466 (579)
+.++..++.. .. .+...-...++.++..+.+.+++++..+..++..++ ...+.+.++.+-++.+++.+..+
T Consensus 235 ~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~ 312 (1230)
T 1u6g_C 235 IQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYN 312 (1230)
T ss_dssp HHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC----
T ss_pred HHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCC
Confidence 8888888765 21 111112268889999999889999999999999998 33344444444477777766210
Q ss_pred --------------------------------CCHhHHHHHHHHHHHhhcCCcc-hhHHHhhcccHHHHHhhcCCCchhh
Q 047123 467 --------------------------------KPVGLQEAATDAVLSLLTVRSN-RKELVRDEKSVMRLMQMLDPKNEAL 513 (579)
Q Consensus 467 --------------------------------~~~~v~~~a~~aL~~L~~~~~~-~~~~~~~~~~i~~Lv~lL~~~~~~~ 513 (579)
....+|..|+.+|..++...+. ...++ ...++.+++.+.+++++
T Consensus 313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d~~~~- 389 (1230)
T 1u6g_C 313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY--KTVSPALISRFKEREEN- 389 (1230)
T ss_dssp --------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH--TTTHHHHHSTTSCSSSH-
T ss_pred CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHcCCCchH-
Confidence 0134688999999999875442 23333 45677888888777666
Q ss_pred hhHHHHHHHHHHh
Q 047123 514 NKKFPVMVTAAVL 526 (579)
Q Consensus 514 ~k~~av~~L~~L~ 526 (579)
++..++.++..+.
T Consensus 390 Vr~~a~~~l~~l~ 402 (1230)
T 1u6g_C 390 VKADVFHAYLSLL 402 (1230)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666554
No 62
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.07 E-value=7.5e-10 Score=123.29 Aligned_cols=191 Identities=16% Similarity=0.144 Sum_probs=153.9
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHH-HHccCCHHHHHHHHHHHHHhcC--CCccHH
Q 047123 206 VGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLR-ILETGSMPLKEKAAIGVEAITT--DPENAW 282 (579)
Q Consensus 206 v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~-lL~~~~~~v~~~aa~~L~~Ls~--~~~~~~ 282 (579)
|.++++.|+ ++++..|..|+.+|.+|+. +++.+..+..+|++.+++. +|.+.+.++++.|+++|.||+. .++.+.
T Consensus 36 i~Pll~~L~-S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 36 ILPVLKDLK-SPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp THHHHHHHS-SSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 555667799 9999999999999999999 9999999999999988765 5788899999999999999994 568899
Q ss_pred HHHhcCcHHHHHHHhcCCC---------------------HHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhcC
Q 047123 283 AISAYGGVSVLIEAFRSGT---------------------ALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLTS 340 (579)
Q Consensus 283 ~i~~~g~i~~Lv~ll~~~~---------------------~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~~ 340 (579)
.+...|++++|..+++... ..+..+++.+|++|+. +++....+...+.++.++..|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 9999999999999886311 1244667888999986 56667788889999999998832
Q ss_pred ---CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcH---HHHHHhhccCCCChHHHHHHHHHHHHcc
Q 047123 341 ---SSNLAQENAADCIATLAASGEYFRLLIIQERGL---QRLMHLIQDSTSSIVTVENALLAISSLS 401 (579)
Q Consensus 341 ---~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i---~~Lv~ll~~~~~~~~~~~~A~~aL~~L~ 401 (579)
...+++..++.||..++.+++.....+.+.+.. ..+..+... .. ..+..+++.|+|+.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~--~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TD--PRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SC--TTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-Cc--HHHHHHHHHHHhHh
Confidence 346899999999999999988887888876643 333333333 33 46778899999874
No 63
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.00 E-value=3.1e-09 Score=118.29 Aligned_cols=194 Identities=13% Similarity=0.101 Sum_probs=153.4
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHH-HhcCCCHHHHHHHHHHHHHhhc--ChhhHH
Q 047123 247 GGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIE-AFRSGTALTQSHAVGAIRNIAA--VEDIKA 323 (579)
Q Consensus 247 g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-ll~~~~~~~~~~a~~aL~nLs~--~~~~~~ 323 (579)
..+.|+++.|++++++.|..||++|.+|+.++.++..+...|+|..++. ++.+.+..++..|+++|+||+. ..+.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 4577788999999999999999999999999999999999999988765 6888899999999999999987 467889
Q ss_pred HHHHcCCHHHHHHHhcCC--------------C-------HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcc
Q 047123 324 ALAEEGAVPVLVQSLTSS--------------S-------NLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQD 382 (579)
Q Consensus 324 ~l~~~g~v~~Lv~lL~~~--------------~-------~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~ 382 (579)
.++..|+++.|..++... . ..+...++.+|.+||..+......+.+.++++.|+..+.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 999999999999887421 1 1355678899999998777777888889999999998744
Q ss_pred C-CCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcH---HHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123 383 S-TSSIVTVENALLAISSLSLS--DSAARILSSTTSF---IIQLGEFIKRGNVLLQQVSSSLLGNLS 443 (579)
Q Consensus 383 ~-~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~---i~~L~~lL~~~~~~v~~~A~~aL~~L~ 443 (579)
. .....++..|+.+|.+++.. +....+.+. +. ...+..+. ..+...+..++..|.|+.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~--~~~~~~~~ll~~~-~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDD--QETHVYDVLLKLA-TGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTC--CSSCHHHHHHHHH-HSSCTTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhc--chHHHHHHHHHHh-cCCcHHHHHHHHHHHhHh
Confidence 3 33357999999999999987 555666665 43 23333333 344445667788888863
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.97 E-value=1.6e-07 Score=103.14 Aligned_cols=327 Identities=14% Similarity=0.139 Sum_probs=219.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
.....+..+++.+.+.|.-+--.+..++..+++.... .++.+.+=|+ ++++.++-.|+++|+++.. ++..
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~-~~n~~ir~lALr~L~~i~~--~e~~-- 144 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLA-SRNPTFMGLALHCIANVGS--REMA-- 144 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHH-SCCHHHHHHHHHHHHHHCC--HHHH--
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcC-CCCHHHHHHHHHHhhccCC--HHHH--
Confidence 3567788999999999999999999998877654422 2667777788 9999999999999999965 3322
Q ss_pred HHhcCCHHHHHHHH--ccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh
Q 047123 243 VFEEGGLGPLLRIL--ETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVE 319 (579)
Q Consensus 243 i~~~g~l~~Lv~lL--~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~ 319 (579)
+..++++.+.| .+.++.+|..|+.++.++.. +++. +-..+.++.+..++.+.++.++.+|+.++..++...
T Consensus 145 ---~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 145 ---EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp ---HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 34578899999 88899999999999999985 3332 112478899999999999999999999999987632
Q ss_pred hhHHHHHHcCCHHHHHH----HhcCC-------------CHHHHHHHHHHHHHHhcC-ChhhHHHHHhcCcHHHHHHhhc
Q 047123 320 DIKAALAEEGAVPVLVQ----SLTSS-------------SNLAQENAADCIATLAAS-GEYFRLLIIQERGLQRLMHLIQ 381 (579)
Q Consensus 320 ~~~~~l~~~g~v~~Lv~----lL~~~-------------~~~v~~~a~~~L~~La~~-~~~~r~~l~~~g~i~~Lv~ll~ 381 (579)
.. . -...+|.+++ ++..+ ++-.|...+..|..++.. ++..+..+.+ .+..++..+.
T Consensus 219 ~~--~--~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~ 292 (621)
T 2vgl_A 219 PE--E--FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQ 292 (621)
T ss_dssp HH--H--HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHH
T ss_pred hH--H--HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhc
Confidence 11 1 1123444443 33221 578999999999988864 3444433322 3333333221
Q ss_pred cC---------CCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHH
Q 047123 382 DS---------TSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRA 451 (579)
Q Consensus 382 ~~---------~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~ 451 (579)
.. +....+.-.|+.++..+...+ .+.. .++..|..++.+.++.+|..+...|..++ .++. ...
T Consensus 293 ~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~---~~~~---~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~ 365 (621)
T 2vgl_A 293 EPPKSKKVQHSNAKNAVLFEAISLIIHHDSEP---NLLV---RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEA 365 (621)
T ss_dssp SCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCH---HHHH---HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHH
T ss_pred cCcccccccccchHHHHHHHHHHHHHhcCCcH---HHHH---HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHH
Confidence 11 101145566677777765321 2222 36777888888889999999999999998 3332 223
Q ss_pred HHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHh
Q 047123 452 VASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVL 526 (579)
Q Consensus 452 i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~ 526 (579)
+.+....++..++.+++..++..+...|..++.. .|...+ +..|.+.+...+.+ .+..++..+..++
T Consensus 366 ~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~-~Nv~~I------v~eL~~yl~~~d~~-~~~~~v~~I~~la 432 (621)
T 2vgl_A 366 VKTHIETVINALKTERDVSVRQRAVDLLYAMCDR-SNAQQI------VAEMLSYLETADYS-IREEIVLKVAILA 432 (621)
T ss_dssp HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH-HHHHHH------HHHHHHHHHHCCHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh-hhHHHH------HHHHHHHHHhcCHH-HHHHHHHHHHHHH
Confidence 3333777788883267788999999999998853 333333 34455555544444 5555555555554
No 65
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.93 E-value=1.5e-08 Score=120.83 Aligned_cols=348 Identities=12% Similarity=0.070 Sum_probs=227.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhh
Q 047123 160 LVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDES 239 (579)
Q Consensus 160 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~ 239 (579)
....++.++..|.+.++++|..|+.+|..++..-+.. .-...++.|+..+. ++++.+|..|+.+|..++......
T Consensus 46 ~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~----~~~~i~~~Ll~~l~-d~~~~vR~~a~~~L~~i~~~l~~~ 120 (1230)
T 1u6g_C 46 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY----QVETIVDTLCTNML-SDKEQLRDISSIGLKTVIGELPPA 120 (1230)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH----HHHHHHHHHHHHTT-CSSSHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH----HHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHhCCCc
Confidence 3457888999999999999999999999998644331 11345778888888 888899999999999988632221
Q ss_pred H-----HHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhcCC--CccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHH
Q 047123 240 R-----KIVFEEGGLGPLLRILE-TGSMPLKEKAAIGVEAITTD--PENAWAISAYGGVSVLIEAFRSGTALTQSHAVGA 311 (579)
Q Consensus 240 ~-----~~i~~~g~l~~Lv~lL~-~~~~~v~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~a 311 (579)
. ..-.....+|.|+..+. +.+..++..+..+|..++.. +.... .-...++.|+..+.+.++.++..++.+
T Consensus 121 ~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~a 198 (1230)
T 1u6g_C 121 SSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIA 198 (1230)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 0 11122356899999998 47899999999999998731 11110 113466778888888889999999999
Q ss_pred HHHhhcChhhHHHHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHH--hcCcHHHHHHhhccCCCChH
Q 047123 312 IRNIAAVEDIKAALAEEGAVPVLVQSLTSS-SNLAQENAADCIATLAASGEYFRLLII--QERGLQRLMHLIQDSTSSIV 388 (579)
Q Consensus 312 L~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~~La~~~~~~r~~l~--~~g~i~~Lv~ll~~~~~~~~ 388 (579)
|..++...... + -...++.++..+... +..++..++.++..++...+. .+. -...++.+++.+.+.++ .
T Consensus 199 l~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~d~~~--~ 270 (1230)
T 1u6g_C 199 LGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCNVDDD--E 270 (1230)
T ss_dssp HHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHSSCCT--T
T ss_pred HHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhcCCCH--H
Confidence 99998743221 2 224577788777543 235667788888888753221 111 14678888888876655 7
Q ss_pred HHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhc-------------------------------------CCH
Q 047123 389 TVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKR-------------------------------------GNV 429 (579)
Q Consensus 389 ~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~-------------------------------------~~~ 429 (579)
+++.+..++..++.. +.....+. ..++.++..+.. ...
T Consensus 271 vR~~a~~~l~~l~~~~~~~~~~~l~---~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 347 (1230)
T 1u6g_C 271 LREYCIQAFESFVRRCPKEVYPHVS---TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSW 347 (1230)
T ss_dssp THHHHHHHHHHHHHCTTCCCHHHHH---HHHHHHTTCCCCC------------------------------------CTT
T ss_pred HHHHHHHHHHHHHHHChHHHHHhHH---HHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCH
Confidence 999999999888775 22222222 244444333321 112
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcc----------------hhH
Q 047123 430 LLQQVSSSLLGNLS-ISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTVRSN----------------RKE 491 (579)
Q Consensus 430 ~v~~~A~~aL~~L~-~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~----------------~~~ 491 (579)
.++..|+.++..++ ..++.-..+.+. ++.|+..+ .+.+..+|..+..++..+...... ...
T Consensus 348 ~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (1230)
T 1u6g_C 348 KVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRF-KEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLT 426 (1230)
T ss_dssp HHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTT-SCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHH
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHH
Confidence 46888999999988 333322333333 88888888 666789999999999888652110 011
Q ss_pred HHh--hcccHHHHHhhcCCCchhhhhHHHHHHHHHHhC
Q 047123 492 LVR--DEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG 527 (579)
Q Consensus 492 ~~~--~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~ 527 (579)
.+. -...++.+.+.+.+.+.. .+..++.++..+..
T Consensus 427 ~~~~~l~~ll~~l~~~l~~~~~~-vr~~~~~~L~~l~~ 463 (1230)
T 1u6g_C 427 MLQSQVPNIVKALHKQMKEKSVK-TRQCCFNMLTELVN 463 (1230)
T ss_dssp HHHHHTTHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHhccCCHH-HHHHHHHHHHHHHH
Confidence 110 023445566668777665 56666666666653
No 66
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.91 E-value=9.5e-08 Score=105.02 Aligned_cols=295 Identities=14% Similarity=0.134 Sum_probs=205.9
Q ss_pred hhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhh--ccCCCHHHHHHHHHHHHHhhc
Q 047123 157 KQDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLL--DFHHQSSIREQAVLALSIIVS 234 (579)
Q Consensus 157 ~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL--~~~~~~~~~~~A~~aL~~La~ 234 (579)
.|.+...+..+..-|++.++..|.-|+.+|..+. .++.. +..++.+.++| . +.++.+|..|+.++..+..
T Consensus 106 ~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~-----~~l~~~v~~~l~~~-d~~~~VRK~A~~al~kl~~ 177 (621)
T 2vgl_A 106 SELIRLINNAIKNDLASRNPTFMGLALHCIANVG--SREMA-----EAFAGEIPKILVAG-DTMDSVKQSAALCLLRLYR 177 (621)
T ss_dssp HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHH-----HHHTTHHHHHHHCS-SSCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHH-----HHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHH
Confidence 3445556788888899999999999999999995 34432 34578888898 7 8899999999999999988
Q ss_pred cChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHH----HHhcCC----------
Q 047123 235 ANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLI----EAFRSG---------- 300 (579)
Q Consensus 235 ~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv----~ll~~~---------- 300 (579)
.+++.. ...+.++.+.++|.+.++.++..|..++..++..... .+ ...++.++ .++..+
T Consensus 178 ~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~ 250 (621)
T 2vgl_A 178 TSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--EF--KTSVSLAVSRLSRIVTSASTDLQDYTYY 250 (621)
T ss_dssp HCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--HH--TTHHHHHHHHHHHHHHCCSSSCSTTEET
T ss_pred hChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--HH--HHHHHHHHHHHHHHHhCCCCCccchhhc
Confidence 444432 2248899999999999999999999999999853221 11 12334444 343322
Q ss_pred ---CHHHHHHHHHHHHHhhcC--hhhHHHHHHcCCHHHHHHHhc---------CCCH--HHHHHHHHHHHHHhcCChhhH
Q 047123 301 ---TALTQSHAVGAIRNIAAV--EDIKAALAEEGAVPVLVQSLT---------SSSN--LAQENAADCIATLAASGEYFR 364 (579)
Q Consensus 301 ---~~~~~~~a~~aL~nLs~~--~~~~~~l~~~g~v~~Lv~lL~---------~~~~--~v~~~a~~~L~~La~~~~~~r 364 (579)
++..|...+..|..++.. ++.+..+.+ .++.++..+. +.+. .+...++.++..+.. ++...
T Consensus 251 ~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~ 327 (621)
T 2vgl_A 251 FVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLL 327 (621)
T ss_dssp TEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHH
T ss_pred CCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHH
Confidence 578888888888888763 344444443 3333433221 1123 778888888888863 22222
Q ss_pred HHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHh-cCCHHHHHHHHHHHHHh
Q 047123 365 LLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIK-RGNVLLQQVSSSLLGNL 442 (579)
Q Consensus 365 ~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~-~~~~~v~~~A~~aL~~L 442 (579)
..++..|..++.+.++ .++..++.+|..++.. +.. .++. .....++..|. +.+..++..+..++..+
T Consensus 328 -----~~~~~~L~~~L~~~~~--niry~aL~~l~~l~~~~~~~-~~~~---~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l 396 (621)
T 2vgl_A 328 -----VRACNQLGQFLQHRET--NLRYLALESMCTLASSEFSH-EAVK---THIETVINALKTERDVSVRQRAVDLLYAM 396 (621)
T ss_dssp -----HHHHHHHHHHSSCSCH--HHHHHHHHHHHHHTTCTTTH-HHHH---TTHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhcCCCc--chHHHHHHHHHHHHhccCcH-HHHH---HHHHHHHHHhccCCCHhHHHHHHHHHHHH
Confidence 2356778888875544 8999999999999876 322 2333 35677888888 89999999999999999
Q ss_pred cCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123 443 SISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTV 485 (579)
Q Consensus 443 ~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~ 485 (579)
+. +.+.+.+ +..|.+.+ ...+.+.+..++.+++.++..
T Consensus 397 ~~-~~Nv~~I---v~eL~~yl-~~~d~~~~~~~v~~I~~la~k 434 (621)
T 2vgl_A 397 CD-RSNAQQI---VAEMLSYL-ETADYSIREEIVLKVAILAEK 434 (621)
T ss_dssp CC-HHHHHHH---HHHHHHHH-HHCCHHHHHHHHHHHHHHHHH
T ss_pred cC-hhhHHHH---HHHHHHHH-HhcCHHHHHHHHHHHHHHHHh
Confidence 73 3333333 45566666 344688899999999998753
No 67
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.71 E-value=2.1e-05 Score=81.06 Aligned_cols=337 Identities=12% Similarity=0.088 Sum_probs=210.9
Q ss_pred HHHHHHHHhc-cCCHHHHHHHHHHHHHHhccCh---hhHHHHHhhCcH-HHHHH-hhccCCCHHHHHHHHHHHHHhhccC
Q 047123 163 FIRDIFTRLQ-IGGVEFKKKALESLLQLLKDDD---KSAAVVAKEGNV-GYLIS-LLDFHHQSSIREQAVLALSIIVSAN 236 (579)
Q Consensus 163 ~v~~Lv~~L~-~~~~~~~~~Al~~L~~l~~~~~---~~~~~i~~~g~v-~~Lv~-LL~~~~~~~~~~~A~~aL~~La~~~ 236 (579)
.+..++.+|+ ....+.....+.-+.++..+++ .....+.+.... ..+.. ++. .++.-.+..+..++..++...
T Consensus 78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~-~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLK-GDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSC-SSHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhc-ccchHHHHHHHHHHHHHhccC
Confidence 5778888887 4678888888999999998877 444454443322 22333 334 455667777777767665312
Q ss_pred hh---hHHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccHHHHHhcC--cHHHHHHHhcC-----------
Q 047123 237 DE---SRKIVFEEGGLGPLLRILETG-SMPLKEKAAIGVEAITTDPENAWAISAYG--GVSVLIEAFRS----------- 299 (579)
Q Consensus 237 ~~---~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~ll~~----------- 299 (579)
.. ....+... +-++..|... +.+.+..++.+|..|...++.|..|.+.+ .++.++.+++.
T Consensus 157 ~~~~~~l~~l~~~---~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 157 LHNVKLVEKLLKN---NNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TCCHHHHHHHHHC---HHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CccHhHHHHHhhh---HHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 22 12222211 0466666653 45667789999999999999999998754 36666654331
Q ss_pred ----C--CHHHHHHHHHHHHHhhcChhhHHHHHHcCCH--HHHHHHhc-CCCHHHHHHHHHHHHHHhcCChh-----hHH
Q 047123 300 ----G--TALTQSHAVGAIRNIAAVEDIKAALAEEGAV--PVLVQSLT-SSSNLAQENAADCIATLAASGEY-----FRL 365 (579)
Q Consensus 300 ----~--~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v--~~Lv~lL~-~~~~~v~~~a~~~L~~La~~~~~-----~r~ 365 (579)
+ ..+++.+++-|++-|+..++....+...+.. +.|+..++ +.-+.+...++.+|.|+...++. ..+
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~ 313 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ 313 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHH
Confidence 1 2467899999999999999988888877643 55666664 34678999999999999876521 223
Q ss_pred HHHhcCcHHHHHHhhccCC-CChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHH-HHhc
Q 047123 366 LIIQERGLQRLMHLIQDST-SSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLL-GNLS 443 (579)
Q Consensus 366 ~l~~~g~i~~Lv~ll~~~~-~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL-~~L~ 443 (579)
.+...++++ +++.|.... .++++.+..-.....|-. -.+.-+. .-+...... +.|.
T Consensus 314 ~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~--------------------~~~~lts-fDeY~~El~sG~L~ 371 (480)
T 1ho8_A 314 LLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILEN--------------------EYQELTS-FDEYVAELDSKLLC 371 (480)
T ss_dssp HHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHH--------------------HHHTCCH-HHHHHHHHHHTCCC
T ss_pred HHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHH--------------------HHHhccc-HHHHHHHHhcCCcc
Confidence 333344444 445444433 334444332221111111 1111110 001111111 2233
Q ss_pred CChhhHH-HHHHH------------HHHHHHhccC---------CCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHH
Q 047123 444 ISDGNKR-AVASC------------MGSLIKLMEC---------PKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMR 501 (579)
Q Consensus 444 ~~~~~~~-~i~~~------------v~~Lv~lL~~---------~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~ 501 (579)
=+|-.+. .|+.. +..|+++|+. +.++.+..-||.=++.+++..++.+.++.+-|+-..
T Consensus 372 WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~ 451 (480)
T 1ho8_A 372 WSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKAD 451 (480)
T ss_dssp CCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHH
T ss_pred cCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHH
Confidence 1222211 22222 7888999842 346778888999999999999999999988889899
Q ss_pred HHhhcCCCchhhhhHHHHHHHHHHh
Q 047123 502 LMQMLDPKNEALNKKFPVMVTAAVL 526 (579)
Q Consensus 502 Lv~lL~~~~~~~~k~~av~~L~~L~ 526 (579)
++++|.+++++ ++..|+-++..+.
T Consensus 452 VM~Lm~h~d~~-Vr~~AL~avQklm 475 (480)
T 1ho8_A 452 IMELLNHSDSR-VKYEALKATQAII 475 (480)
T ss_dssp HHHHTSCSSHH-HHHHHHHHHHHHH
T ss_pred HHHHhcCCCHH-HHHHHHHHHHHHH
Confidence 99999999888 8888888776654
No 68
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.58 E-value=1.3e-05 Score=90.83 Aligned_cols=373 Identities=12% Similarity=0.145 Sum_probs=244.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccCh---hh
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAND---ES 239 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~---~~ 239 (579)
.+.+++..+...+...+..|+..+..+...+.... .+..+.+..|.+.+. ..... |.|+.++..|+.... ..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~k~~~--~~a~~~~~~~~~~~~~~~~~ 89 (986)
T 2iw3_A 15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIK-DKKTA--ANAMQAVAHIANQSNLSPSV 89 (986)
T ss_dssp HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHT-SHHHH--HHHHHHHHHHTCTTTCCTTT
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHh-ccCCH--HHHHHHHHHHHHhcCCCCCc
Confidence 45567777777666667788888888765431111 112367788888887 44333 999999999995221 22
Q ss_pred HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC--CCccHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHhh
Q 047123 240 RKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT--DPENAWAISAYGGVSVLIEAFRSG-TALTQSHAVGAIRNIA 316 (579)
Q Consensus 240 ~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~--~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLs 316 (579)
...++ +.++.++..+.+....|+..|..++..+.. +++.. ...++.|+..+.+. ....+..|+.++..|+
T Consensus 90 e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~ 162 (986)
T 2iw3_A 90 EPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMV 162 (986)
T ss_dssp HHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred ccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 23333 678999999888888999999888888773 33332 33579999988765 5789999999999998
Q ss_pred cChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc--CChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHH
Q 047123 317 AVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA--SGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENAL 394 (579)
Q Consensus 317 ~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~--~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~ 394 (579)
..........-...||.+...+.+..+++...+..++..+|. ++.+. ...+|.|++.+...+ + ...++
T Consensus 163 ~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~---~-~~~~~ 232 (986)
T 2iw3_A 163 DAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPT---E-VPETV 232 (986)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTT---H-HHHHH
T ss_pred HHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChh---h-hHHHH
Confidence 632222122223478888888988899999999999999985 33332 567899999887753 2 33344
Q ss_pred HHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CChhhHHHHHHH-HHHHHHhccCCCCH
Q 047123 395 LAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS---ISDGNKRAVASC-MGSLIKLMECPKPV 469 (579)
Q Consensus 395 ~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~---~~~~~~~~i~~~-v~~Lv~lL~~~~~~ 469 (579)
..|..-.+- +.....+.- .+|.|..-|...+..+++.++-++.||| .+|.....|... +|.|-+..+...++
T Consensus 233 ~~l~~~tfv~~v~~~~l~~---~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~p 309 (986)
T 2iw3_A 233 HLLGATTFVAEVTPATLSI---MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADP 309 (986)
T ss_dssp HHHTTCCCCSCCCHHHHHH---HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSH
T ss_pred HHhhcCeeEeeecchhHHH---HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCH
Confidence 555544444 222333332 5666777788889999999999999999 677777777777 89999888777899
Q ss_pred hHHHHHHHHHHHhhcCCc-----chhHHHh--h-cccHHHHHhhcCCCch----hhhhHHHHHHHHHHhCCCChhHHHHH
Q 047123 470 GLQEAATDAVLSLLTVRS-----NRKELVR--D-EKSVMRLMQMLDPKNE----ALNKKFPVMVTAAVLGGGSNGCRKRL 537 (579)
Q Consensus 470 ~v~~~a~~aL~~L~~~~~-----~~~~~~~--~-~~~i~~Lv~lL~~~~~----~~~k~~av~~L~~L~~~~~~~~r~~i 537 (579)
++|+.|..|+..|-.... ....... + ......+.+.+..... +....|...+...+...+. ....-
T Consensus 310 e~r~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~--~~~~~ 387 (986)
T 2iw3_A 310 EAREVTLRALKTLRRVGNVGEDDAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERI--IDQQA 387 (986)
T ss_dssp HHHHHHHHHHHHHHHHHTCBTTTBCCCCCCTTCHHHHHHHHHHHTTTSCCCGGGHHHHHHHHHHHHHHHHTTC--CSHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccchHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhccc--cchhH
Confidence 999999999998843211 1000000 0 0112334444543221 2256778888888887775 43444
Q ss_pred HHcCchHHHHhhhccCCchHHHHHHHH
Q 047123 538 VAAGAYQHLQKLAETEVPGAKKVLQRL 564 (579)
Q Consensus 538 ~~~g~~~~L~~L~~~~~~~ak~~~~~l 564 (579)
+.....++|..++. +..++.+++.+
T Consensus 388 ~~~~~~~~~~~~~~--~~~~~~~~~~~ 412 (986)
T 2iw3_A 388 WFTHITPYMTIFLH--EKKAKDILDEF 412 (986)
T ss_dssp HHHHTHHHHTTTSC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--hhhHHHHHHHH
Confidence 44555566665553 23455555543
No 69
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.55 E-value=1.7e-06 Score=83.06 Aligned_cols=182 Identities=16% Similarity=0.175 Sum_probs=138.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhh-ccCCCHHHHHHHHHHHHHhhccChhhHHHHH
Q 047123 166 DIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLL-DFHHQSSIREQAVLALSIIVSANDESRKIVF 244 (579)
Q Consensus 166 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL-~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~ 244 (579)
.+.+.+++.++..|..|+..|..++...+..... .-...++.|..++ + +.+..++..|+.+++.|+..-...-.. .
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~-~~~~i~~~L~~~l~k-d~~~~V~~~a~~~l~~la~~l~~~~~~-~ 95 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENG-EYGALVSALKKVITK-DSNVVLVAMAGKCLALLAKGLAKRFSN-Y 95 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC-CCHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHHGGGGHH-H
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCC-CHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHhhhHHH-H
Confidence 4777889999999999999999998763321100 0123577788888 6 889999999999999999621111111 1
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-C-hh--
Q 047123 245 EEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-V-ED-- 320 (579)
Q Consensus 245 ~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~-~~-- 320 (579)
-...+++++..+.+.+..++..+..+|..+...... ...++.+...+++.++.++..++..|..+.. . ++
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 234799999999999999999999999999865432 1356888889999999999999999999644 3 22
Q ss_pred hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123 321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA 358 (579)
Q Consensus 321 ~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~ 358 (579)
....+ ...+|.++.++.+.+..+|..|..++..++.
T Consensus 170 ~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 170 NKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred cHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 22333 2478999999999999999999999999875
No 70
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.50 E-value=1.3e-05 Score=74.02 Aligned_cols=187 Identities=13% Similarity=0.080 Sum_probs=149.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
.+..|+.+|+..|+.++..|+..|.++.+.-+...+...-..+++.+++++. +.|..+...|+++|..|-.+.|-..+.
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk-~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALS-QENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCC-STTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 5778899999999999999999999999886666666666778999999999 999999999999999888755555555
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhH
Q 047123 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIK 322 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~ 322 (579)
+.. +...|..++++++.-.++.++..+..+.--...+ +++..++.++.+.+..++..+..++.|++...+..
T Consensus 113 y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 113 FLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp HHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred HHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 532 4678888999999999999999999994222222 35578888898999999999999999998733221
Q ss_pred HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 047123 323 AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASG 360 (579)
Q Consensus 323 ~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~ 360 (579)
.. -.+++..+-.++++.++.+++.|+..+..+.+..
T Consensus 185 ~i--~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 185 GH--LTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp CC--GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 11 1234555667889999999999999999998753
No 71
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.47 E-value=6.5e-05 Score=84.12 Aligned_cols=271 Identities=15% Similarity=0.094 Sum_probs=185.5
Q ss_pred HHHHHHHhc---cCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCC--------HHHHHHHHHHHHHh
Q 047123 164 IRDIFTRLQ---IGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQ--------SSIREQAVLALSII 232 (579)
Q Consensus 164 v~~Lv~~L~---~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~--------~~~~~~A~~aL~~L 232 (579)
+..|-..|. ++++..+.-|+..|+-+..+... ..+..|...|. +.+ +.++..|+..|+.+
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~-~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIV-ENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHH-HHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHc-CccccccccccHHHHHHHHHHHHHH
Confidence 334444554 56778888888888888654421 14677777776 544 66888888888876
Q ss_pred hccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhc-CCCHHHHHHHHHH
Q 047123 233 VSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFR-SGTALTQSHAVGA 311 (579)
Q Consensus 233 a~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~a~~a 311 (579)
..... . +.+++.|..+|.+.+..+++.|+.+|+.+-....+.. ++..|+..+. ..+..++..++.+
T Consensus 465 ~~GS~--~-----eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~------ai~~LL~~~~e~~~e~vrR~aalg 531 (963)
T 4ady_A 465 AMGSA--N-----IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE------AIHDMFTYSQETQHGNITRGLAVG 531 (963)
T ss_dssp STTCC--C-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred hcCCC--C-----HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH------HHHHHHHHHhccCcHHHHHHHHHH
Confidence 43111 1 1246778888888777778888888887643222222 3466666543 4577888888888
Q ss_pred HHHhhcChhhHHHHHHcCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHH
Q 047123 312 IRNIAAVEDIKAALAEEGAVPVLVQSLT-SSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTV 390 (579)
Q Consensus 312 L~nLs~~~~~~~~l~~~g~v~~Lv~lL~-~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~ 390 (579)
|..+... +...++.+++.|. +.++-++..++.++..-..+..+ ...++.|++.+.++.. +.++
T Consensus 532 LGll~~g--------~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn-------~~aIq~LL~~~~~d~~-d~VR 595 (963)
T 4ady_A 532 LALINYG--------RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN-------NSAVKRLLHVAVSDSN-DDVR 595 (963)
T ss_dssp HHHHTTT--------CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC-------HHHHHHHHHHHHHCSC-HHHH
T ss_pred HHhhhCC--------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHhccCCc-HHHH
Confidence 8877542 2235677777764 57888998888887754433222 2347777777765543 5799
Q ss_pred HHHHHHHHHcccchhHHHHHhhcCcHHHHHHH-HHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHhccCCCC
Q 047123 391 ENALLAISSLSLSDSAARILSSTTSFIIQLGE-FIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASCMGSLIKLMECPKP 468 (579)
Q Consensus 391 ~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~-lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~v~~Lv~lL~~~~~ 468 (579)
..|+.+|..+..++. ..++.++. +++++++.+|..++.+|+.++ .++. . +.++.|.+++ ++.+
T Consensus 596 raAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~----~aid~L~~L~-~D~d 660 (963)
T 4ady_A 596 RAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-Q----SAIDVLDPLT-KDPV 660 (963)
T ss_dssp HHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-H----HHHHHHHHHH-TCSS
T ss_pred HHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-H----HHHHHHHHHc-cCCC
Confidence 999999998876621 34555555 456789999999999999998 4432 1 1277788888 7889
Q ss_pred HhHHHHHHHHHHHhhcCCc
Q 047123 469 VGLQEAATDAVLSLLTVRS 487 (579)
Q Consensus 469 ~~v~~~a~~aL~~L~~~~~ 487 (579)
..||..|+.+|+.+.....
T Consensus 661 ~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 661 DFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHhcCCc
Confidence 9999999999999976543
No 72
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.46 E-value=0.00016 Score=81.00 Aligned_cols=300 Identities=12% Similarity=0.018 Sum_probs=200.2
Q ss_pred HhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhcc--CCCHHHHHHHHHHHHHhhccChhhHHHHHhcC
Q 047123 170 RLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDF--HHQSSIREQAVLALSIIVSANDESRKIVFEEG 247 (579)
Q Consensus 170 ~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~--~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g 247 (579)
.+.......+..|+.+|+-+-..+. .+++..|-..|.. ++++.++..|+.+|+.+..... ..
T Consensus 366 Wl~k~~~~~k~sA~aSLGlIh~g~~--------~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~---~~----- 429 (963)
T 4ady_A 366 WLGKAQNWAKFTATASLGVIHKGNL--------LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG---RD----- 429 (963)
T ss_dssp HHHHCCTHHHHHHHHHHHHHTSSCT--------TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT---HH-----
T ss_pred hhhccchHHHHHHHHHhhhhccCch--------HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc---HH-----
Confidence 3333344556777777777765542 2346666666641 3468899999999999877222 11
Q ss_pred CHHHHHHHHccCC--------HHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh
Q 047123 248 GLGPLLRILETGS--------MPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVE 319 (579)
Q Consensus 248 ~l~~Lv~lL~~~~--------~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~ 319 (579)
++..|...|.+.+ +.++..|+..|+-......+. .++..|..++.+.+..++..++.+|..+-...
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e------ev~e~L~~~L~dd~~~~~~~AalALGli~vGT 503 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI------EVYEALKEVLYNDSATSGEAAALGMGLCMLGT 503 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc
Confidence 4677777777655 668888888888765332222 24577888888877777777888877663322
Q ss_pred hhHHHHHHcCCHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123 320 DIKAALAEEGAVPVLVQSL-TSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAIS 398 (579)
Q Consensus 320 ~~~~~l~~~g~v~~Lv~lL-~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~ 398 (579)
.+.. ++..|+..+ .+.++.++..++..|+.+..+++. .++.+++.+..... +.++..++.++.
T Consensus 504 gn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~d-p~vRygaa~alg 567 (963)
T 4ady_A 504 GKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDE-SLLRYGGAFTIA 567 (963)
T ss_dssp CCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSC-HHHHHHHHHHHH
T ss_pred CCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence 2221 344555554 456788999999999988766543 47777777765443 467777777666
Q ss_pred Hcccc-hhHHHHHhhcCcHHHHHHHHH-hcCCHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHhccCCCCHhHHHHH
Q 047123 399 SLSLS-DSAARILSSTTSFIIQLGEFI-KRGNVLLQQVSSSLLGNLS-ISDGNKRAVASCMGSLIKLMECPKPVGLQEAA 475 (579)
Q Consensus 399 ~L~~~-~~~~~l~~~~~g~i~~L~~lL-~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a 475 (579)
.-+.+ .+. .++..|++.+ .+.+..+|..|+.+|..+. .+++ .++.++.++.++.++.+|..+
T Consensus 568 lAyaGTGn~--------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e-------~v~rlv~~L~~~~d~~VR~gA 632 (963)
T 4ady_A 568 LAYAGTGNN--------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT-------TVPRIVQLLSKSHNAHVRCGT 632 (963)
T ss_dssp HHTTTSCCH--------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS-------SHHHHTTTGGGCSCHHHHHHH
T ss_pred HHhcCCCCH--------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH-------HHHHHHHHHHhcCCHHHHHHH
Confidence 43333 221 3566566665 4567899999999999987 4442 267777766577889999999
Q ss_pred HHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC
Q 047123 476 TDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS 530 (579)
Q Consensus 476 ~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~ 530 (579)
+.||+.++...++ ...+..|..++.+.+.. ++..|+.+|..+.....
T Consensus 633 alALGli~aGn~~-------~~aid~L~~L~~D~d~~-Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 633 AFALGIACAGKGL-------QSAIDVLDPLTKDPVDF-VRQAAMIALSMILIQQT 679 (963)
T ss_dssp HHHHHHHTSSSCC-------HHHHHHHHHHHTCSSHH-HHHHHHHHHHHHSTTCC
T ss_pred HHHHHHhccCCCc-------HHHHHHHHHHccCCCHH-HHHHHHHHHHHHhcCCc
Confidence 9999999764432 23456777888877777 77778777887776543
No 73
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.35 E-value=4.8e-08 Score=84.56 Aligned_cols=118 Identities=17% Similarity=0.152 Sum_probs=92.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
.++.++..|++.++.+|..|+..|..+.. ..++.|+++|+ ++++.+|..|+.+|+++..
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~-d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLS-NEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGG-CSCHHHHHHHHHHHGGGCS--------
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHc-CCCHHHHHHHHHHHHhcCC--------
Confidence 47788899999999999998888876532 12689999999 9999999999999998875
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Q 047123 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRN 314 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~n 314 (579)
...++.|+..|++.++.++..++++|.++.. ...++.|+.++++.++.++..++.+|.+
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3458999999999999999999999999862 2467899999998899999999988764
No 74
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.35 E-value=0.0004 Score=61.54 Aligned_cols=213 Identities=13% Similarity=0.202 Sum_probs=158.9
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhc-ChhhH
Q 047123 246 EGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFR-SGTALTQSHAVGAIRNIAA-VEDIK 322 (579)
Q Consensus 246 ~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLs~-~~~~~ 322 (579)
...+..++.+|++.-..++.+|...+.+++. .++....+ +..|+.+++ ++....-.....++..++. .|+.-
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence 4578899999999999999999999999995 55544333 466666654 5666665666777777776 44433
Q ss_pred HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHccc
Q 047123 323 AALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSL 402 (579)
Q Consensus 323 ~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~ 402 (579)
. +.||.+..-+.-+++.++.+...+|..++..+|..- .+.++-+..++.+.+. .-+-.|...|..+..
T Consensus 106 ~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smltskd~--~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 106 K-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLSSKNR--EDKLTALNFIEAMGE 173 (253)
T ss_dssp H-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTSCSSH--HHHHHHHHHHHTCCT
T ss_pred H-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCCCh--HHHHHHHHHHHHHhc
Confidence 2 356777777778899999999999999998777643 3345667777775553 556667777766655
Q ss_pred chhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHH
Q 047123 403 SDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLS 481 (579)
Q Consensus 403 ~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~ 481 (579)
+ .-..+. -++++|..+|.+++.-|+..|..+|.+++ .++..|+.+.+ -+.-+ ++.+..++....++|+.
T Consensus 174 n--~~~yv~---PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~----kl~e~-~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 174 N--SFKYVN---PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK----RLEEL-NDTSSLVNKTVKEGISR 243 (253)
T ss_dssp T--THHHHG---GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH----HHHHC-CCSCHHHHHHHHHHHHH
T ss_pred c--CccccC---cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHH----HHHHh-cCcHHHHHHHHHHHHHH
Confidence 4 223333 48999999999999999999999999999 88887776444 34455 67788999999999998
Q ss_pred hhcC
Q 047123 482 LLTV 485 (579)
Q Consensus 482 L~~~ 485 (579)
|..-
T Consensus 244 l~l~ 247 (253)
T 2db0_A 244 LLLL 247 (253)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8754
No 75
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.31 E-value=2.9e-05 Score=78.18 Aligned_cols=308 Identities=10% Similarity=0.070 Sum_probs=169.7
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHH
Q 047123 175 GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLR 254 (579)
Q Consensus 175 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~ 254 (579)
++.-...++..+..+...++..-..- -.......++++. +++...+.-.--++.+++. .++- .+ =++..|.+
T Consensus 40 ~~~kc~~~l~kll~l~~~G~~f~~~e-~t~lf~~v~kl~~-s~d~~lKrLvYLyl~~~~~-~~~e--~i---Lv~Nsl~k 111 (355)
T 3tjz_B 40 NPRKCAHILTKILYLINQGEHLGTTE-ATEAFFAMTKLFQ-SNDPTLRRMCYLTIKEMSC-IAED--VI---IVTSSLTK 111 (355)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHHGGGG-CCCHHHHHHHHHHHHHHTT-TSSC--GG---GGHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCCCchhH-HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhCC-CHHH--HH---HHHHHHHh
Confidence 44444556666666544332211000 0122345567888 9999999988888888887 3221 11 35788888
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHH
Q 047123 255 ILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPV 333 (579)
Q Consensus 255 lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~ 333 (579)
=+.++++-++..|.++|+++...+ ... ...+.+-+.+.+.++.++..|+.+..+|.. .++ +++ +.++.
T Consensus 112 Dl~~~N~~iR~lALRtL~~I~~~~-m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe----~v~-~~~~~ 180 (355)
T 3tjz_B 112 DMTGKEDSYRGPAVRALCQITDST-MLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD----VVK-RWVNE 180 (355)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCCTT-THH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH----HHH-TTHHH
T ss_pred hcCCCcHhHHHHHHHHHhcCCCHH-HHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH----HHH-HHHHH
Confidence 899999999999999999998643 222 234667778889999999999999988876 333 222 68889
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCC-CChHHHHHHHHHHHHcccchhHHHHHhh
Q 047123 334 LVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDST-SSIVTVENALLAISSLSLSDSAARILSS 412 (579)
Q Consensus 334 Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~-~~~~~~~~A~~aL~~L~~~~~~~~l~~~ 412 (579)
+-.++.+.++.++.+|+.+|..+...+.. .+..|+..+..+. .++-.+-.-.+.+..++..+. .-...
T Consensus 181 l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~--~~~~~ 249 (355)
T 3tjz_B 181 AQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED--GSRDS 249 (355)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC------------
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc--hhhHH
Confidence 99999999999999999999999875532 2444555444432 123334343444434433220 11112
Q ss_pred cCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHH
Q 047123 413 TTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKEL 492 (579)
Q Consensus 413 ~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 492 (579)
..++.+..+|++.++.|..+|+.++..+...+. ..+..++..|..++ .+.++.+|..|...|..++...++.-..
T Consensus 250 --~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~--~~~~~a~~~L~~fL-ss~d~niryvaLr~L~~l~~~~P~~v~~ 324 (355)
T 3tjz_B 250 --PLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA--KELAPAVSVLQLFC-SSPKAALRYAAVRTLNKVAMKHPSAVTA 324 (355)
T ss_dssp ---------CCCCCSSHHHHHHHHHHHTC-------------CCCTHHHHH-HSSSSSSHHHHHHCC-------------
T ss_pred --HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH--HHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHCcHHHHH
Confidence 466777778889999999999999999874221 11122266777778 6667899999999999988765433221
Q ss_pred HhhcccHHHHHhhcCCCchhhhhHHHHHHHH
Q 047123 493 VRDEKSVMRLMQMLDPKNEALNKKFPVMVTA 523 (579)
Q Consensus 493 ~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~ 523 (579)
.-..+.+++.+++.. +...|+..|.
T Consensus 325 -----~n~~ie~li~d~n~s-I~t~Aittll 349 (355)
T 3tjz_B 325 -----CNLDLENLVTDANRS-IATLAITTLL 349 (355)
T ss_dssp -------------------------------
T ss_pred -----HHHHHHHHccCCcHh-HHHHHHHHhh
Confidence 224567777766644 4444444443
No 76
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.29 E-value=3.8e-06 Score=81.07 Aligned_cols=189 Identities=14% Similarity=0.107 Sum_probs=136.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHH-HhccChhhHHHHHh-hCcHHHHHHhh-ccCCCHHHHHHHHHHHHHhhccC--hhhH
Q 047123 166 DIFTRLQIGGVEFKKKALESLLQ-LLKDDDKSAAVVAK-EGNVGYLISLL-DFHHQSSIREQAVLALSIIVSAN--DESR 240 (579)
Q Consensus 166 ~Lv~~L~~~~~~~~~~Al~~L~~-l~~~~~~~~~~i~~-~g~v~~Lv~LL-~~~~~~~~~~~A~~aL~~La~~~--~~~~ 240 (579)
.+...+++.++..|..|+..|.. ++.+.++......+ ...+..|.+.+ + +.+..++..|+.+|+.|+..- +...
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~-D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK-DANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhccccccc
Confidence 34567799999999999999999 87543321100001 23477788888 6 889999999999999998622 1221
Q ss_pred -HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH--hcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 047123 241 -KIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAIS--AYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA 317 (579)
Q Consensus 241 -~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~ 317 (579)
... .-.+++++..+++....+++.+..+|..+..+-+- .... -...++.|+..+++.++.++..++.+|..+..
T Consensus 99 ~~y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 99 KDYV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 222 23689999999999999999999999888842110 0010 11367889999999999999999999988875
Q ss_pred Chh---hHHHHHH-cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123 318 VED---IKAALAE-EGAVPVLVQSLTSSSNLAQENAADCIATLAA 358 (579)
Q Consensus 318 ~~~---~~~~l~~-~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~ 358 (579)
... ....-.- ...+|.+.+++.+.++.+|..|..+|..++.
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 322 1111122 5789999999999999999999999998863
No 77
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.25 E-value=9.7e-08 Score=82.58 Aligned_cols=121 Identities=17% Similarity=0.204 Sum_probs=94.2
Q ss_pred hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccH
Q 047123 202 KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENA 281 (579)
Q Consensus 202 ~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~ 281 (579)
....++.|+.+|+ ++++.+|..|+.+|+.+.. ..++.|++.|++.++.++..|+++|.++..
T Consensus 10 ~~~~~~~l~~~L~-~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~----- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMA-DENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD----- 71 (131)
T ss_dssp -----------CC-SSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----
T ss_pred ccccHHHHHHHhc-CCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----
Confidence 4567889999999 9999999999988887765 237999999999999999999999999863
Q ss_pred HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHH
Q 047123 282 WAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIAT 355 (579)
Q Consensus 282 ~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~ 355 (579)
...++.|+..+.++++.++..++++|.++.. ..+++.|+.++++.++.++..++.+|.+
T Consensus 72 -----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 -----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2357999999999999999999999998752 2357889999998899999999988764
No 78
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.19 E-value=0.0013 Score=58.32 Aligned_cols=213 Identities=15% Similarity=0.183 Sum_probs=152.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123 162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK 241 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~ 241 (579)
.++..++..|..+-+-++..|+..+..++..-++...- .+..|+.+++.+.....-...+++++.++.-.|+...
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~ 106 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK 106 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHH
Confidence 47889999999999999999999999999887765433 3455666665466666655667889999985555443
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChh
Q 047123 242 IVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVED 320 (579)
Q Consensus 242 ~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~ 320 (579)
+++|.+..=..-+++.++.+...+|..++. +|+... ++++-+..++.+.+..-+-.++..+..+..
T Consensus 107 -----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGe--- 173 (253)
T 2db0_A 107 -----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGE--- 173 (253)
T ss_dssp -----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCT---
T ss_pred -----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhc---
Confidence 347888888888999999999999999984 554433 345778888888886555555555544432
Q ss_pred hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHc
Q 047123 321 IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSL 400 (579)
Q Consensus 321 ~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L 400 (579)
+...-+ ...+|.|..+|.+++.-++..++++|.+++..++..|..+. .-++-+++.++ .++.....+|..+
T Consensus 174 n~~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~--lv~~~V~egL~rl 244 (253)
T 2db0_A 174 NSFKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSS--LVNKTVKEGISRL 244 (253)
T ss_dssp TTHHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCH--HHHHHHHHHHHHH
T ss_pred cCcccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHH--HHHHHHHHHHHHH
Confidence 222211 23678899999999999999999999999998888766542 22333344443 6666666666655
Q ss_pred c
Q 047123 401 S 401 (579)
Q Consensus 401 ~ 401 (579)
.
T Consensus 245 ~ 245 (253)
T 2db0_A 245 L 245 (253)
T ss_dssp H
T ss_pred H
Confidence 4
No 79
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.16 E-value=1.3e-05 Score=76.93 Aligned_cols=178 Identities=15% Similarity=0.164 Sum_probs=132.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcC--hhhHHHHH
Q 047123 251 PLLRILETGSMPLKEKAAIGVEAITTD-PENAWAISAYGGVSVLIEAFR-SGTALTQSHAVGAIRNIAAV--EDIKAALA 326 (579)
Q Consensus 251 ~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLs~~--~~~~~~l~ 326 (579)
.+.+.+.+.+...|..++..|..+... ++..... -...++.|...+. +.+..++..++.++..++.. +.....
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~-- 95 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY-- 95 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH--
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH--
Confidence 477888888999999999999998743 3211000 0235778888884 89999999999999999852 222222
Q ss_pred HcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--h
Q 047123 327 EEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--D 404 (579)
Q Consensus 327 ~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~ 404 (579)
-...+|.++..+.+.++.++..+..+|..+..... . ...++.+...+++.++ .++..++..|..+... +
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~~--~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKNP--SVKSETALFIARALTRTQP 166 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSCH--HHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHcCC
Confidence 23378999999999999999999999999986432 1 2356778888887655 8999999999996543 2
Q ss_pred h--HHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123 405 S--AARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS 443 (579)
Q Consensus 405 ~--~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~ 443 (579)
. ....+. .+++.|..++.+.++++|..|..++..++
T Consensus 167 ~~~~~~~l~---~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 167 TALNKKLLK---LLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp GGCCHHHHH---HHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred CCccHHHHH---HHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 1 223333 37888889999899999999999988887
No 80
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.12 E-value=3.6e-05 Score=77.56 Aligned_cols=275 Identities=13% Similarity=0.086 Sum_probs=156.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
.-...+..+++.|.+.|.-.--.+..++...++.. + ++..|.+=++ ++++-+|-.|+++|+++.. . +..+
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i--L----v~Nsl~kDl~-~~N~~iR~lALRtL~~I~~-~-~m~~- 138 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI--I----VTSSLTKDMT-GKEDSYRGPAVRALCQITD-S-TMLQ- 138 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG--G----GHHHHHHHHH-SSCHHHHHHHHHHHHHHCC-T-TTHH-
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH--H----HHHHHHhhcC-CCcHhHHHHHHHHHhcCCC-H-HHHH-
Confidence 44567788999999999988888888876644332 1 3777888888 9999999999999999987 2 2222
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhH
Q 047123 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIK 322 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~ 322 (579)
...+++.+.|.+.++.|+..|+.+..+|.... .+.+ .+.+..+-+++.+.++.++.+|+.+|..+..++..
T Consensus 139 ----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~- 209 (355)
T 3tjz_B 139 ----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL- 209 (355)
T ss_dssp ----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH-
T ss_pred ----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH-
Confidence 23556667777889999999999999998532 2222 26788999999999999999999999999875421
Q ss_pred HHHHHcCCHHHHHHHhcCC---CHHHHHHHHHHHHHHhcCC-hhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123 323 AALAEEGAVPVLVQSLTSS---SNLAQENAADCIATLAASG-EYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAIS 398 (579)
Q Consensus 323 ~~l~~~g~v~~Lv~lL~~~---~~~v~~~a~~~L~~La~~~-~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~ 398 (579)
++..++..+..+ ++-.+...+..+..++..+ +. .....++.+..++++.++ .+.-.|+.+|.
T Consensus 210 -------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~--aVvyEa~k~I~ 275 (355)
T 3tjz_B 210 -------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHE--MVVYEAASAIV 275 (355)
T ss_dssp -------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSH--HHHHHHHHHHT
T ss_pred -------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCCh--HHHHHHHHHHH
Confidence 234444444432 4555555666555555443 22 113445666666765554 78888999998
Q ss_pred HcccchhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHH
Q 047123 399 SLSLSDSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASCMGSLIKLMECPKPVGLQEAATD 477 (579)
Q Consensus 399 ~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~ 477 (579)
.+..... .... .++..|..++.+.++.+|..|...|..+. .+|+.-. .+-..+.+++ .+.+..+.-.|..
T Consensus 276 ~l~~~~~--~~~~---~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~---~~n~~ie~li-~d~n~sI~t~Ait 346 (355)
T 3tjz_B 276 NLPGCSA--KELA---PAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVT---ACNLDLENLV-TDANRSIATLAIT 346 (355)
T ss_dssp C----------------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------------
T ss_pred hccCCCH--HHHH---HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHH---HHHHHHHHHc-cCCcHhHHHHHHH
Confidence 8765311 1222 24556777788999999999999888887 5554322 2244555666 4445555554444
Q ss_pred HH
Q 047123 478 AV 479 (579)
Q Consensus 478 aL 479 (579)
.|
T Consensus 347 tl 348 (355)
T 3tjz_B 347 TL 348 (355)
T ss_dssp --
T ss_pred Hh
Confidence 43
No 81
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.06 E-value=0.00017 Score=66.68 Aligned_cols=221 Identities=14% Similarity=0.143 Sum_probs=152.6
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hh
Q 047123 328 EGAVPVLVQSLTSSSNLAQENAADCIATLAASG-EYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DS 405 (579)
Q Consensus 328 ~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~-~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~ 405 (579)
++.+..+..++++.++.++.+++.+|..+...- ...+... -...++.++.++.+.+. .+.-.|.++|..|-.+ +-
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~-~e~~Ld~iI~llk~~dE--kval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMV-LERHLDVFINALSQENE--KVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHTCCSTTH--HHHHHHHHHHHHHHTTCCB
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHH-HHHHHHHHHHHHhccch--hHHHHHHHHHHHHHcCCCC
Confidence 346788999999999999999999999988642 2233333 35568999999977775 8999999999999887 32
Q ss_pred HHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123 406 AARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTV 485 (579)
Q Consensus 406 ~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~ 485 (579)
...-.. ..+..|..++.++++-.+.+++..+..+..-...++- +..+.+++ .+++..++.++..+|.+++..
T Consensus 109 ~~~~y~---Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V----~~~l~sLl-~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 109 GSKTFL---KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLV----RTYINELV-VSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp CHHHHH---HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHH----HHHHHHHH-TCSSHHHHHHHHHHHHHHGGG
T ss_pred CHHHHH---HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHH----HHHHHHHH-hCCChhHHHHHHHHHHHhhcc
Confidence 222222 2566788888999999999999999999611111111 66788889 999999999999999999976
Q ss_pred CcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC-hhHHHHHHHcCchHHHHhhhc-cCCc----hHHH
Q 047123 486 RSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS-NGCRKRLVAAGAYQHLQKLAE-TEVP----GAKK 559 (579)
Q Consensus 486 ~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~-~~~r~~i~~~g~~~~L~~L~~-~~~~----~ak~ 559 (579)
+.+...+ +..+..+-.+|.+.++. .++.++..+-.+...+- ++.-..+ .++......|++ .+.| .||+
T Consensus 181 S~D~~i~---~~I~~eI~elL~~eD~~-l~e~aLd~Le~ils~pi~~~~~~~~--~~~~~~v~~l~~~~~~~~~~~ka~~ 254 (265)
T 3b2a_A 181 SADSGHL---TLILDEIPSLLQNDNEF-IVELALDVLEKALSFPLLENVKIEL--LKISRIVDGLVYREGAPIIRLKAKK 254 (265)
T ss_dssp CSSCCCG---GGTTTTHHHHHTCSCHH-HHHHHHHHHHHHTTSCCCSCCHHHH--HHHHHHHHHGGGCSSCHHHHHHHHH
T ss_pred cCCHHHH---HHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHcCcccHhHHHHH--HHHHHHHHHHHHhcCChhHHHHHHH
Confidence 5332211 22334455667777766 88899998888877662 1111111 223333445663 3444 4666
Q ss_pred HHHHHh
Q 047123 560 VLQRLA 565 (579)
Q Consensus 560 ~~~~l~ 565 (579)
+.+++.
T Consensus 255 v~~~le 260 (265)
T 3b2a_A 255 VSDLID 260 (265)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666664
No 82
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.99 E-value=0.00041 Score=68.12 Aligned_cols=152 Identities=14% Similarity=0.044 Sum_probs=126.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKI 242 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~ 242 (579)
.+..++..|++++.+.+..++-.|..+..++......++..+|+..|++... .++...+..+++++.+|.. +......
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~-~~~gN~q~Y~L~AL~~LM~-~v~Gm~g 196 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGA-AADHNYQSYILRALGQLML-FVDGMLG 196 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHT-TSCHHHHHHHHHHHHHHTT-SHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHH-hcChHHHHHHHHHHHHHHh-ccccccc
Confidence 4778899999999999999999999977788899999999999999999999 8999999999999999999 8777766
Q ss_pred HH-hcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHhc----------CcHHHHHHHhc---CCCHHHHHH
Q 047123 243 VF-EEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPE-NAWAISAY----------GGVSVLIEAFR---SGTALTQSH 307 (579)
Q Consensus 243 i~-~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~-~~~~i~~~----------g~i~~Lv~ll~---~~~~~~~~~ 307 (579)
++ +...|..+..++.+....+...|..+|..++.+.+ +...+.+. .-+..|+.+|+ +.|.+++.+
T Consensus 197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 66 44578888888888889999999999999986443 43333221 12779999997 678999999
Q ss_pred HHHHHHHhh
Q 047123 308 AVGAIRNIA 316 (579)
Q Consensus 308 a~~aL~nLs 316 (579)
+...+-.+-
T Consensus 277 amtLIN~lL 285 (339)
T 3dad_A 277 TVTLINKTL 285 (339)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888775553
No 83
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.94 E-value=4e-05 Score=73.82 Aligned_cols=201 Identities=10% Similarity=0.126 Sum_probs=138.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-hhc-ChhhHHHHHH-cCCHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCh--hhHHH
Q 047123 293 LIEAFRSGTALTQSHAVGAIRN-IAA-VEDIKAALAE-EGAVPVLVQSL-TSSSNLAQENAADCIATLAASGE--YFRLL 366 (579)
Q Consensus 293 Lv~ll~~~~~~~~~~a~~aL~n-Ls~-~~~~~~~l~~-~g~v~~Lv~lL-~~~~~~v~~~a~~~L~~La~~~~--~~r~~ 366 (579)
+.+.+++.+..-|..++..|.. +.. .+.......+ ...+..|.+.+ ++.+..++..|+.+|..++.+-. .+..
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~- 99 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK- 99 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH-
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH-
Confidence 3456678899999999999998 763 3221100000 12466777788 78899999999999999985211 1110
Q ss_pred HHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHH--HhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123 367 IIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARI--LSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS 443 (579)
Q Consensus 367 l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l--~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~ 443 (579)
-.-.-.++.++..+.+... .+++.+..++.+++.. +..... ++ ..++.|...|++.++.+|+.++.+|..+.
T Consensus 100 ~y~~~llp~ll~~l~dkk~--~V~~aa~~al~~i~~~~~~~~~~~~l~---~ll~~l~~~l~~k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKP--SVIEAIRKALLTICKYYDPLASSGRNE---DMLKDILEHMKHKTPQIRMECTQLFNASM 174 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCH--HHHHHHHHHHHHHHHHSCTTCTTCTTH---HHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHccccccCCcHH---HHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 0112357888888877664 7899999999988875 110010 22 36778889999999999999999999998
Q ss_pred -CCh----hhHHHH-HHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCC
Q 047123 444 -ISD----GNKRAV-ASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDP 508 (579)
Q Consensus 444 -~~~----~~~~~i-~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~ 508 (579)
..+ .....+ .+-++.|.+++ ++.+.++|..|..+|+.++.. + .+..+.+.+.-|++
T Consensus 175 ~~~~~~~~~l~~~l~~~iip~l~~~l-~D~~~~VR~aA~~~l~~i~~~-------v-G~~~~~p~l~~Ld~ 236 (249)
T 2qk1_A 175 KEEKDGYSTLQRYLKDEVVPIVIQIV-NDTQPAIRTIGFESFAILIKI-------F-GMNTFVKTLEHLDN 236 (249)
T ss_dssp HHCCSCSHHHHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHH-------H-CSGGGHHHHHHSCH
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHH-------h-CHHHHHHHHHHHhH
Confidence 222 233455 44499999999 777899999999999999863 2 13345566655643
No 84
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.92 E-value=0.001 Score=68.65 Aligned_cols=231 Identities=14% Similarity=0.120 Sum_probs=155.1
Q ss_pred HHHHhhccC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcC--CHHHHHHHHcc---------------C--CHHHHHHH
Q 047123 208 YLISLLDFH-HQSSIREQAVLALSIIVSANDESRKIVFEEG--GLGPLLRILET---------------G--SMPLKEKA 267 (579)
Q Consensus 208 ~Lv~LL~~~-~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g--~l~~Lv~lL~~---------------~--~~~v~~~a 267 (579)
.++..|. . ++...+..++++|..|.. .+++|..+.+.+ .+++++.++.. + ...++..+
T Consensus 171 ~~~~~L~-~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ 248 (480)
T 1ho8_A 171 NLINILQ-NIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHS 248 (480)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHH
T ss_pred HHHHHhc-cccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHH
Confidence 4555666 4 346667889999999999 999999998654 46777655442 1 24568899
Q ss_pred HHHHHHhcCCCccHHHHHhcCcH--HHHHHHhcC-CCHHHHHHHHHHHHHhhcCh-----hhHH-HHHHcCCHHHHHHHh
Q 047123 268 AIGVEAITTDPENAWAISAYGGV--SVLIEAFRS-GTALTQSHAVGAIRNIAAVE-----DIKA-ALAEEGAVPVLVQSL 338 (579)
Q Consensus 268 a~~L~~Ls~~~~~~~~i~~~g~i--~~Lv~ll~~-~~~~~~~~a~~aL~nLs~~~-----~~~~-~l~~~g~v~~Lv~lL 338 (579)
+-+++-|+.+++....+...+.. ..|+.+++. .-.++.+-++.+|+|+.... .... .++..+++ .++..|
T Consensus 249 ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l-~~l~~L 327 (480)
T 1ho8_A 249 LLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL-PTVQSL 327 (480)
T ss_dssp HHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH-HHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccch-HHHHHH
Confidence 99999999999888888877754 677777775 45788899999999998743 1112 23334444 455555
Q ss_pred cC---CCHHHHHHHHHHHH-------HHhcCChh--------------hH-HHHHh----------cCcHHHHHHhhccC
Q 047123 339 TS---SSNLAQENAADCIA-------TLAASGEY--------------FR-LLIIQ----------ERGLQRLMHLIQDS 383 (579)
Q Consensus 339 ~~---~~~~v~~~a~~~L~-------~La~~~~~--------------~r-~~l~~----------~g~i~~Lv~ll~~~ 383 (579)
.. .++++.+..-.... .+++.++. .+ +.+.. ...+..|++++++.
T Consensus 328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 407 (480)
T ss_dssp HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence 32 35555444333222 22222211 11 12222 12468888988742
Q ss_pred --------CCChHHHHHHHHHHHHcccc-hh-HHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123 384 --------TSSIVTVENALLAISSLSLS-DS-AARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS 443 (579)
Q Consensus 384 --------~~~~~~~~~A~~aL~~L~~~-~~-~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~ 443 (579)
+.++.+...||.=|..++.. +. +..+-+. |+-..+.+++.+.+++|+.+|..++..+-
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~l--g~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKT--GGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHH--SHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHc--CcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 12246788888888888887 44 4444455 88889999999999999999999988764
No 85
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.83 E-value=0.0011 Score=65.10 Aligned_cols=153 Identities=15% Similarity=0.121 Sum_probs=120.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH-hcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHH-Hc
Q 047123 251 PLLRILETGSMPLKEKAAIGVEA-ITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALA-EE 328 (579)
Q Consensus 251 ~Lv~lL~~~~~~v~~~aa~~L~~-Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~-~~ 328 (579)
.++..|.+++...+..+..-|.. +..+.+....|+..+|+..|+.....++...+.+++.++.++..+...-..++ ..
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 34556666777778888888888 66788999999999999999999999999999999999999998877665555 44
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC----------cHHHHHHhhccCC-CChHHHHHHHHHH
Q 047123 329 GAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQER----------GLQRLMHLIQDST-SSIVTVENALLAI 397 (579)
Q Consensus 329 g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g----------~i~~Lv~ll~~~~-~~~~~~~~A~~aL 397 (579)
..|..+..++.+.+..+...|+..|..++..++.....+.+.- -.+.|+.+|...+ .+.+++.+|...|
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 5788888888888899999999999999877664444333211 2679999997322 2358888888877
Q ss_pred HHcccc
Q 047123 398 SSLSLS 403 (579)
Q Consensus 398 ~~L~~~ 403 (579)
..+-..
T Consensus 282 N~lL~~ 287 (339)
T 3dad_A 282 NKTLAA 287 (339)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 766654
No 86
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.34 E-value=0.044 Score=63.21 Aligned_cols=333 Identities=10% Similarity=0.054 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhcc----CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHH
Q 047123 177 EFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDF----HHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPL 252 (579)
Q Consensus 177 ~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~----~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~L 252 (579)
.++..++.+|..++...++...-. -..+++...+++.. ..+..+...++..+..++. .+..+..+.....++.+
T Consensus 261 ~vk~~~~~~l~~l~~~~~~~f~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~-~~~~~~~~~~~~~l~~l 338 (960)
T 1wa5_C 261 KVKSSIQELVQLYTTRYEDVFGPM-INEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTR-IPKYFEIFNNESAMNNI 338 (960)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHT-SHHHHGGGCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhC-cHhHHHHHcCchHHHHH
Confidence 356778888888876554432211 23445555555531 2346888899999998887 55544333211233333
Q ss_pred H-----HHHc----c-----CC--------------HHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhc------
Q 047123 253 L-----RILE----T-----GS--------------MPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFR------ 298 (579)
Q Consensus 253 v-----~lL~----~-----~~--------------~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~------ 298 (579)
+ ..+. + .+ ...+..|..+|..|+..-+ ..+. ...++.+...+.
T Consensus 339 i~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v~-~~~l~~i~~~l~~~~~~~ 415 (960)
T 1wa5_C 339 TEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLVT-NIFLAHMKGFVDQYMSDP 415 (960)
T ss_dssp HHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHHH-HHHHHHHHHHHHHHHC--
T ss_pred HHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhHH-HHHHHHHHHHHHHhccCc
Confidence 3 2221 0 01 1356667777777774321 1110 112233333344
Q ss_pred CCCHHHHHHHHHHHHHhhcChhhHHHHHHc-----CCHH----HHHHHhcCC---CHHHHHHHHHHHHHHhcCChhhHHH
Q 047123 299 SGTALTQSHAVGAIRNIAAVEDIKAALAEE-----GAVP----VLVQSLTSS---SNLAQENAADCIATLAASGEYFRLL 366 (579)
Q Consensus 299 ~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~-----g~v~----~Lv~lL~~~---~~~v~~~a~~~L~~La~~~~~~r~~ 366 (579)
+.+...++.|+.++..++..-..+..-... ...+ .++..+.+. ++-++..++++++.++..-. .+.
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~ 493 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQ 493 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HHH
Confidence 456788999999999997421100000000 1112 223334555 88999999999999987421 111
Q ss_pred HHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-h---------hHHHHHhhcCcHHHHHHHHHhcCC---HH--H
Q 047123 367 IIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-D---------SAARILSSTTSFIIQLGEFIKRGN---VL--L 431 (579)
Q Consensus 367 l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~---------~~~~l~~~~~g~i~~L~~lL~~~~---~~--v 431 (579)
-...++.+++.+.+.+ ..++..|+.+|.+++.. + ....+...-...+..|+.+++... .. .
T Consensus 494 --l~~~l~~l~~~L~d~~--~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~ 569 (960)
T 1wa5_C 494 --LIELMPILATFLQTDE--YVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAE 569 (960)
T ss_dssp --HHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTS
T ss_pred --HHHHHHHHHHHhCCCC--hhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccc
Confidence 2345677777776544 48999999999998863 1 112121111146677777887651 11 2
Q ss_pred HHHHHHHHHHhc--CChhhHHHHHHHHHHHHH----hccCCCCHhHHHHHHHHHHHhhcC-CcchhHHHhhcccHHHHHh
Q 047123 432 QQVSSSLLGNLS--ISDGNKRAVASCMGSLIK----LMECPKPVGLQEAATDAVLSLLTV-RSNRKELVRDEKSVMRLMQ 504 (579)
Q Consensus 432 ~~~A~~aL~~L~--~~~~~~~~i~~~v~~Lv~----lL~~~~~~~v~~~a~~aL~~L~~~-~~~~~~~~~~~~~i~~Lv~ 504 (579)
...+..+|..+. ..++...++..-++.|+. ..++..+...+....++|+.++.. .+.....+ +...++.+..
T Consensus 570 ~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~ 648 (960)
T 1wa5_C 570 NEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLT 648 (960)
T ss_dssp CHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHH
Confidence 245556666654 223333322222444443 333455677778889999999875 22222222 2455667777
Q ss_pred hcCCCchhhhhHHHHHHH
Q 047123 505 MLDPKNEALNKKFPVMVT 522 (579)
Q Consensus 505 lL~~~~~~~~k~~av~~L 522 (579)
.|.....+ ...++..++
T Consensus 649 iL~~~~~~-~~~~~~~i~ 665 (960)
T 1wa5_C 649 VFSEDIQE-FIPYVFQII 665 (960)
T ss_dssp HHHTTCTT-THHHHHHHH
T ss_pred HHHhhhHh-hHHHHHHHH
Confidence 77655433 333444333
No 87
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.29 E-value=0.056 Score=62.30 Aligned_cols=343 Identities=10% Similarity=0.073 Sum_probs=188.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHhccC-hhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccC------hh
Q 047123 166 DIFTRLQIGGVEFKKKALESLLQLLKDD-DKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAN------DE 238 (579)
Q Consensus 166 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~------~~ 238 (579)
.++..+...+..+|.+...++..++..+ ++. =.+.++.|+++++ ++++..++.++.++..++... ++
T Consensus 89 ~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~-----Wp~ll~~L~~~l~-s~~~~~~~~aL~~l~~i~~~~~~~~~~~~ 162 (960)
T 1wa5_C 89 EIVPLMISLPNNLQVQIGEAISSIADSDFPDR-----WPTLLSDLASRLS-NDDMVTNKGVLTVAHSIFKRWRPLFRSDE 162 (960)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHTTCC-SSCTTHHHHHHHHHHHHHGGGTTSCCCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhCccc-----hhHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHhhcChH
Confidence 4556666667888999999998887532 211 1567899999998 888888999999999998722 12
Q ss_pred hHHHH--HhcCCHHHHHHHH-------ccCCH---------HHHHHHHHHHHHhcCCCccHHHHHh--cCcHHHHHHHhc
Q 047123 239 SRKIV--FEEGGLGPLLRIL-------ETGSM---------PLKEKAAIGVEAITTDPENAWAISA--YGGVSVLIEAFR 298 (579)
Q Consensus 239 ~~~~i--~~~g~l~~Lv~lL-------~~~~~---------~v~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~ll~ 298 (579)
.+..+ +-....+++++++ ..... ++...++.++.++....- ...+.+ ...++.+..++.
T Consensus 163 ~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~ 241 (960)
T 1wa5_C 163 LFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDI-PEFFEDNIQVGMGIFHKYLS 241 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCC-CHHHHHTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHc
Confidence 22222 1122345555443 33211 233346667776653211 111111 122344455553
Q ss_pred CC------C---------HHHHHHHHHHHHHhhc-Chh-hHHHHHHcCCHHHHHHHhc-----CCCHHHHHHHHHHHHHH
Q 047123 299 SG------T---------ALTQSHAVGAIRNIAA-VED-IKAALAEEGAVPVLVQSLT-----SSSNLAQENAADCIATL 356 (579)
Q Consensus 299 ~~------~---------~~~~~~a~~aL~nLs~-~~~-~~~~l~~~g~v~~Lv~lL~-----~~~~~v~~~a~~~L~~L 356 (579)
.. + ..++..++.+|..+.. +++ ....+ ...++.+...+. ..++.+...++..+..+
T Consensus 242 ~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~ 319 (960)
T 1wa5_C 242 YSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMI--NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAV 319 (960)
T ss_dssp CCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH--HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHH
T ss_pred CCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHH
Confidence 21 1 2466777888877764 322 11111 123444455553 34678899999999888
Q ss_pred hcCChhhHHHHHhcCcHHHHH-----Hhhc----c-----------------CCCChHHHHHHHHHHHHcccchhHHHHH
Q 047123 357 AASGEYFRLLIIQERGLQRLM-----HLIQ----D-----------------STSSIVTVENALLAISSLSLSDSAARIL 410 (579)
Q Consensus 357 a~~~~~~r~~l~~~g~i~~Lv-----~ll~----~-----------------~~~~~~~~~~A~~aL~~L~~~~~~~~l~ 410 (579)
+... ..+..+.....++.++ ..+. + .+.....+..|..+|..|+..-. +.++
T Consensus 320 ~~~~-~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~ 397 (960)
T 1wa5_C 320 TRIP-KYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVT 397 (960)
T ss_dssp HTSH-HHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHH
T ss_pred hCcH-hHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHH
Confidence 7532 2222111113333333 2221 0 01112456677777777776611 2222
Q ss_pred hhcCcHHHHHHHHHh------cCCHHHHHHHHHHHHHhcCC---hh--hHH-----HHHHH-HHHHHHhccCC--CCHhH
Q 047123 411 SSTTSFIIQLGEFIK------RGNVLLQQVSSSLLGNLSIS---DG--NKR-----AVASC-MGSLIKLMECP--KPVGL 471 (579)
Q Consensus 411 ~~~~g~i~~L~~lL~------~~~~~v~~~A~~aL~~L~~~---~~--~~~-----~i~~~-v~~Lv~lL~~~--~~~~v 471 (579)
.. +++.+...+. +.+...++.|..++..++.. .+ ... .+.+- +..++..+.+. .++-+
T Consensus 398 ~~---~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~v 474 (960)
T 1wa5_C 398 NI---FLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIIL 474 (960)
T ss_dssp HH---HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHH
T ss_pred HH---HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCcee
Confidence 22 3444444454 45567888999999998721 11 000 12121 12233334222 38899
Q ss_pred HHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhC
Q 047123 472 QEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG 527 (579)
Q Consensus 472 ~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~ 527 (579)
|..++.+++.++..-. .... ...++.+++.|.+.+.. ++.+|+.++.+|+.
T Consensus 475 r~~a~~~lg~~~~~~~--~~~l--~~~l~~l~~~L~d~~~~-V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 475 RVDAIKYIYTFRNQLT--KAQL--IELMPILATFLQTDEYV-VYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHHHHHHTGGGSC--HHHH--HHHHHHHHHHTTCSCHH-HHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhhCC--HHHH--HHHHHHHHHHhCCCChh-HHHHHHHHHHHHHh
Confidence 9999999999986531 2222 34567788888766544 88999999999886
No 88
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.18 E-value=0.027 Score=64.98 Aligned_cols=294 Identities=10% Similarity=0.074 Sum_probs=153.8
Q ss_pred CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhh---c-cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCH
Q 047123 174 GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLL---D-FHHQSSIREQAVLALSIIVSANDESRKIVFEEGGL 249 (579)
Q Consensus 174 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL---~-~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l 249 (579)
.+...+..|+.++..++..-.... ...++.++.++ . .++++.++..++.+++.++.......+.+ ..++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHH
Confidence 566788888999998875433221 23344444433 2 02479999999999999886212111111 2346
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh--cCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcC-h-hhHH
Q 047123 250 GPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISA--YGGVSVLIEAFRSG--TALTQSHAVGAIRNIAAV-E-DIKA 323 (579)
Q Consensus 250 ~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~ll~~~--~~~~~~~a~~aL~nLs~~-~-~~~~ 323 (579)
+.|+..|+ +.++..|+.++.+++. +++..+.. .+.+..|..++..+ +...+..+..++..++.. + +...
T Consensus 549 ~~l~~~l~---~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~ 623 (971)
T 2x1g_F 549 NLLVRGLN---SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP 623 (971)
T ss_dssp HHHHHHHH---SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred HHHHHHhC---hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 66677773 6789999999999994 33444432 34666677777763 567888888888887652 2 2222
Q ss_pred HHHHcCCHHHHHHHh----cCC--CHHHHHHHHHHHHHHhcCChhh-------------HH--HHHhcCcHHHHHHhhcc
Q 047123 324 ALAEEGAVPVLVQSL----TSS--SNLAQENAADCIATLAASGEYF-------------RL--LIIQERGLQRLMHLIQD 382 (579)
Q Consensus 324 ~l~~~g~v~~Lv~lL----~~~--~~~v~~~a~~~L~~La~~~~~~-------------r~--~l~~~g~i~~Lv~ll~~ 382 (579)
...+ ..+++++..+ ... +++.+.....++..++..-... .. .-.-...++.+..++..
T Consensus 624 ~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~ 702 (971)
T 2x1g_F 624 KYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEM 702 (971)
T ss_dssp HHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHh
Confidence 2221 2334444333 332 3434444444554443210000 00 01123456777777665
Q ss_pred CCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc----CChhhHHHHHHH-
Q 047123 383 STSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS----ISDGNKRAVASC- 455 (579)
Q Consensus 383 ~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~----~~~~~~~~i~~~- 455 (579)
...+..+.+.+++++..++.. +.....+.. +++.++..++.... ..+...+..+. .+++....+.+.
T Consensus 703 ~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~---~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~ 776 (971)
T 2x1g_F 703 WVEEIDVLEAACSAMKHAITNLRSSFQPMLQD---LCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLL 776 (971)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHC--CTHHHH---HHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhhhhccccHHH---HHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 433358999999999998765 222222221 33444433333221 12333344333 333333333333
Q ss_pred ---HHHHHHhccCC------CCHhHHHHHHHHHHHhhcCC
Q 047123 456 ---MGSLIKLMECP------KPVGLQEAATDAVLSLLTVR 486 (579)
Q Consensus 456 ---v~~Lv~lL~~~------~~~~v~~~a~~aL~~L~~~~ 486 (579)
+..+..++... .++++++.....+..+....
T Consensus 777 ~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~ 816 (971)
T 2x1g_F 777 REFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKI 816 (971)
T ss_dssp HHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhC
Confidence 44455555221 35677787777777776543
No 89
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.16 E-value=0.059 Score=61.19 Aligned_cols=283 Identities=11% Similarity=0.072 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc--HHHHHhcCcHHHHHHH
Q 047123 219 SSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPEN--AWAISAYGGVSVLIEA 296 (579)
Q Consensus 219 ~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~l 296 (579)
..-+..++..+..+....... ..+..+.+..+.+.+...... +.|+.++..|+..... ...-.-.+.++.++..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 103 (986)
T 2iw3_A 28 ADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTN 103 (986)
T ss_dssp TTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 344455666666654412111 111135677777777664333 9999999999943221 1112223678999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhc--ChhhHHHHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHh--cC
Q 047123 297 FRSGTALTQSHAVGAIRNIAA--VEDIKAALAEEGAVPVLVQSLTSS-SNLAQENAADCIATLAASGEYFRLLIIQ--ER 371 (579)
Q Consensus 297 l~~~~~~~~~~a~~aL~nLs~--~~~~~~~l~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~~La~~~~~~r~~l~~--~g 371 (579)
+.+....++..|..++..+.. +++... .++|.|+..+.+. .=..+..|+.++..|+...+ .++.. ..
T Consensus 104 ~~dk~~~v~~aa~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~---~~~~~~~~~ 175 (986)
T 2iw3_A 104 AGNKDKEIQSVASETLISIVNAVNPVAIK-----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK---DQVALRMPE 175 (986)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHSCGGGHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH---HHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH---HHHHHhccc
Confidence 999889999999988877754 443332 3578888888654 35788999999999986432 23322 56
Q ss_pred cHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhh-H
Q 047123 372 GLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGN-K 449 (579)
Q Consensus 372 ~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~-~ 449 (579)
.+|.+...+.+-.+ +++..|..++..+|.. ++.+. + .+++.|++.+.+.+. + .++...|..-+.-.+. .
T Consensus 176 ~~p~~~~~~~d~k~--~v~~~~~~~~~~~~~~~~n~d~--~---~~~~~~~~~~~~p~~-~-~~~~~~l~~~tfv~~v~~ 246 (986)
T 2iw3_A 176 LIPVLSETMWDTKK--EVKAAATAAMTKATETVDNKDI--E---RFIPSLIQCIADPTE-V-PETVHLLGATTFVAEVTP 246 (986)
T ss_dssp HHHHHHHHTTCSSH--HHHHHHHHHHHHHGGGCCCTTT--G---GGHHHHHHHHHCTTH-H-HHHHHHHTTCCCCSCCCH
T ss_pred hhcchHhhcccCcH--HHHHHHHHHHHHHHhcCCCcch--h---hhHHHHHHHhcChhh-h-HHHHHHhhcCeeEeeecc
Confidence 77888887776655 8999999999999986 33221 1 588999999987744 3 3345555544422222 2
Q ss_pred HHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcc---hhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHH
Q 047123 450 RAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSN---RKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAV 525 (579)
Q Consensus 450 ~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~---~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L 525 (579)
..+.=.+|.|.+-| ...+..++..++-++.||+.--++ ...|+ ..-++.+-+..+.-..+..++.+-.++..|
T Consensus 247 ~~l~~~~p~l~r~l-~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~--~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 247 ATLSIMVPLLSRGL-NERETGIKRKSAVIIDNMCKLVEDPQVIAPFL--GKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHHHHHHHHHHHHH-TSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH--TTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhh-ccCcchhheeeEEEEcchhhhcCCHHHHhhhh--hhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 22222288999999 667888889999999999875444 33344 344555555555443332555544444433
No 90
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.01 E-value=0.11 Score=59.87 Aligned_cols=337 Identities=9% Similarity=0.057 Sum_probs=175.9
Q ss_pred ccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhh-c-cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCH
Q 047123 172 QIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLL-D-FHHQSSIREQAVLALSIIVSANDESRKIVFEEGGL 249 (579)
Q Consensus 172 ~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL-~-~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l 249 (579)
...++..+..++.+++.++..-... ....++.++..+ . .++++.++..++.+++.++.......+. -..++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~--l~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM--INSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH--HTTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH--HHHHH
Confidence 4457788888899999887543221 123345555443 1 0357889999999999988721222222 24788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh--cCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCh--hhHH
Q 047123 250 GPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISA--YGGVSVLIEAFRSG--TALTQSHAVGAIRNIAAVE--DIKA 323 (579)
Q Consensus 250 ~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~ll~~~--~~~~~~~a~~aL~nLs~~~--~~~~ 323 (579)
+.++..|.+ +.++..|+.++.+++.. ++..+.. ...+..|..++..+ +...+.....++..+...- +...
T Consensus 532 ~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 532 PLVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 889988865 78999999999999842 2222321 23445555666642 4678888888888886532 2222
Q ss_pred HHHHcCCHHHHHHHhc----C-CCHHHHH---HHHHHHHHHhcC----Ch-h--------------hH--HHHHhcCcHH
Q 047123 324 ALAEEGAVPVLVQSLT----S-SSNLAQE---NAADCIATLAAS----GE-Y--------------FR--LLIIQERGLQ 374 (579)
Q Consensus 324 ~l~~~g~v~~Lv~lL~----~-~~~~v~~---~a~~~L~~La~~----~~-~--------------~r--~~l~~~g~i~ 374 (579)
... ...++.+...+. . .+++.+. ..+.+|..+... .+ . .+ -.-......+
T Consensus 608 ~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (963)
T 2x19_B 608 KNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ 686 (963)
T ss_dssp HHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence 222 224445444442 2 2444443 444555444321 00 0 00 0111233455
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHHHHHHhc-CCHHHHHHHHHHHHHhcCChhhHHH
Q 047123 375 RLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQLGEFIKR-GNVLLQQVSSSLLGNLSISDGNKRA 451 (579)
Q Consensus 375 ~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L~~lL~~-~~~~v~~~A~~aL~~L~~~~~~~~~ 451 (579)
.+..++.....+..+.+.++.++..+... +....++.. .++.++.-... ..+.+-.-....+.....++.....
T Consensus 687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~---~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~~ 763 (963)
T 2x19_B 687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQ---LCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPP 763 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHH---HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCHH
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHH---HHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHHH
Confidence 55555554333357888899988887643 211111211 22233333332 3333333333334433333222222
Q ss_pred ---HHHH-HHHHHHhcc-C-CCCHhHHHHHHHHHHHhhcCCcchhHHHhh----cccHHHHHhhcCCCchhhhhHHHHHH
Q 047123 452 ---VASC-MGSLIKLME-C-PKPVGLQEAATDAVLSLLTVRSNRKELVRD----EKSVMRLMQMLDPKNEALNKKFPVMV 521 (579)
Q Consensus 452 ---i~~~-v~~Lv~lL~-~-~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~----~~~i~~Lv~lL~~~~~~~~k~~av~~ 521 (579)
+.+. +..++.++. + ..+++++......|..+....+.. +... ...+..++..|...+.. ..+.++..
T Consensus 764 ~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~l~~~~~~-~~~~~l~~ 840 (963)
T 2x19_B 764 IEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDL--FLCERLDVKAVFQCAVLALKFPEAP-TVKASCGF 840 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGG--GGCTTSCHHHHHHHHHHHTTCSCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHH--HcCCcccHHHHHHHHHHHcCCCCHH-HHHHHHHH
Confidence 2222 455555442 1 246888988888888887543321 1110 11233445555544444 44555555
Q ss_pred HHHHh
Q 047123 522 TAAVL 526 (579)
Q Consensus 522 L~~L~ 526 (579)
+..+.
T Consensus 841 l~~l~ 845 (963)
T 2x19_B 841 FTELL 845 (963)
T ss_dssp HHHHG
T ss_pred HHHHH
Confidence 55554
No 91
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.022 Score=55.27 Aligned_cols=185 Identities=12% Similarity=0.073 Sum_probs=123.1
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHhccChhhH--HHHH--hhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccCh--h-h
Q 047123 167 IFTRLQIGGVEFKKKALESLLQLLKDDDKSA--AVVA--KEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAND--E-S 239 (579)
Q Consensus 167 Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~--~~i~--~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~--~-~ 239 (579)
+-.+|.+.++..|.+|+..|..+....+... .... -...++.+.+.+. +.+..++..++.++..++.... . .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~-DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT-DSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 5688999999999999999998876543221 1111 1234566677888 9999999999999998875211 1 1
Q ss_pred H--HHHHhcCCHHHHHHH-HccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 047123 240 R--KIVFEEGGLGPLLRI-LETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIA 316 (579)
Q Consensus 240 ~--~~i~~~g~l~~Lv~l-L~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs 316 (579)
+ ....-...++.|+.- |.+....++..+..++..+......... .++.++..+.+.++.++..++..|..+.
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 1 112223467777764 6777888898888888777632211111 3466777888899999999998887764
Q ss_pred cC--hh--hHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047123 317 AV--ED--IKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAA 358 (579)
Q Consensus 317 ~~--~~--~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~ 358 (579)
.. .. .....+ ..+++.+..++.+.++.||..|..++..+-.
T Consensus 168 ~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 168 AAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 31 11 111111 1245567778899999999999999988754
No 92
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.69 E-value=0.037 Score=52.99 Aligned_cols=181 Identities=12% Similarity=0.062 Sum_probs=122.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccC--hhhHHH
Q 047123 165 RDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAN--DESRKI 242 (579)
Q Consensus 165 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~--~~~~~~ 242 (579)
.++...|.+.|...+..|+..|......+++......+. .+.++.--+. +.++.+...++.+|..+...- .+++-.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDl-l~kw~~lr~~-d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDL-LLKWCTLRFF-ETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHH-HHHHHHHHTT-SCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHH-HHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 356777788899999999999998876655432211111 2343332334 678888889888888764311 011100
Q ss_pred HHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhh
Q 047123 243 VFE-EGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDI 321 (579)
Q Consensus 243 i~~-~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~ 321 (579)
-.+ .-.+|.|+.-+.+....+|..+-.++..+..- .......+.+++-+++.+...+..++..+..+-.....
T Consensus 127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~ 200 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI 200 (266)
T ss_dssp HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC
Confidence 011 23589999999888899999988888777531 11122557788888999999999999888877442211
Q ss_pred HHHHHHcCCH---HHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047123 322 KAALAEEGAV---PVLVQSLTSSSNLAQENAADCIATLA 357 (579)
Q Consensus 322 ~~~l~~~g~v---~~Lv~lL~~~~~~v~~~a~~~L~~La 357 (579)
. ...++ +.+..++.+.+..++..|+.++..+-
T Consensus 201 ~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 201 S----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp G----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred C----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 1 23478 99999999999999999999988653
No 93
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.64 E-value=0.71 Score=53.06 Aligned_cols=231 Identities=9% Similarity=0.054 Sum_probs=128.1
Q ss_pred CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHH---c--cCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcH
Q 047123 217 HQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRIL---E--TGSMPLKEKAAIGVEAITTD-PENAWAISAYGGV 290 (579)
Q Consensus 217 ~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL---~--~~~~~v~~~aa~~L~~Ls~~-~~~~~~i~~~g~i 290 (579)
.+...++.|+.+++.++....... ...++.++.++ . +.++.++..+++++..++.. .++... -..++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~--l~~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY--IPPAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C--HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH--HHHHH
Confidence 567789999999999987322211 13344444444 3 34789999999999998831 111110 12356
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHH--HcCCHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCh-hhHH
Q 047123 291 SVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALA--EEGAVPVLVQSLTS--SSNLAQENAADCIATLAASGE-YFRL 365 (579)
Q Consensus 291 ~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~--~~g~v~~Lv~lL~~--~~~~v~~~a~~~L~~La~~~~-~~r~ 365 (579)
+.|+..+ + +.++..|++++.+++. +.+..+. -...+..+..++.. .+...+..+..++..++..-+ ....
T Consensus 549 ~~l~~~l-~--~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~ 623 (971)
T 2x1g_F 549 NLLVRGL-N--SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP 623 (971)
T ss_dssp HHHHHHH-H--SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred HHHHHHh-C--hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 6777766 3 6789999999999984 2333333 22355566666765 356888899999998875321 1111
Q ss_pred HHHhcCcHHHHHH----hhccCCCChHHHHHHHHHHHHcccc-h---h--------------HHHHHhhcCcHHHHHHHH
Q 047123 366 LIIQERGLQRLMH----LIQDSTSSIVTVENALLAISSLSLS-D---S--------------AARILSSTTSFIIQLGEF 423 (579)
Q Consensus 366 ~l~~~g~i~~Lv~----ll~~~~~~~~~~~~A~~aL~~L~~~-~---~--------------~~~l~~~~~g~i~~L~~l 423 (579)
... ...++.++. +++....++..+.....++..|+.. . . ...+.. .+++.+..+
T Consensus 624 ~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~i~~~l~~~ 699 (971)
T 2x1g_F 624 KYL-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQ---RTMPIFKRI 699 (971)
T ss_dssp HHH-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHH---TTHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHH---HHHHHHHHH
Confidence 111 223333333 3333210123445555555555432 1 0 011122 366666666
Q ss_pred Hhc--CCHHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHHHHhc
Q 047123 424 IKR--GNVLLQQVSSSLLGNLSI--SDGNKRAVASCMGSLIKLM 463 (579)
Q Consensus 424 L~~--~~~~v~~~A~~aL~~L~~--~~~~~~~i~~~v~~Lv~lL 463 (579)
+.. .+..+.+.+..++.+++. ..+....+...++.|+..+
T Consensus 700 l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~ 743 (971)
T 2x1g_F 700 AEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASF 743 (971)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHC
T ss_pred HHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHH
Confidence 654 367899999999999771 1122222222266666666
No 94
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.49 E-value=0.1 Score=59.99 Aligned_cols=314 Identities=12% Similarity=0.060 Sum_probs=168.0
Q ss_pred HHHHHHHhc----cCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhcc--Ch
Q 047123 164 IRDIFTRLQ----IGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSA--ND 237 (579)
Q Consensus 164 v~~Lv~~L~----~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~--~~ 237 (579)
++.+...|. ..+++.+..++.+|.....- -....+...+.++.+.++|. . +++++.|+.+|..+... .+
T Consensus 191 ~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~w--i~~~~i~~~~ll~~l~~~L~-~--~~~r~~A~ecL~ei~~k~~~~ 265 (980)
T 3ibv_A 191 VSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSW--ININLIVNEPCMNLLYSFLQ-I--EELRCAACETMTEIVNKKMKP 265 (980)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--SCHHHHHCHHHHHHHHHHTT-S--HHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhh--cCHHhhhcchHHHHHHHHcC-C--hHHHHHHHHHHHHHHHcCCCh
Confidence 444445553 37888899999999999863 23456677889999999987 4 89999999999988762 23
Q ss_pred hhHHHHHhcCCHHHHHHHHc--cCCHHHHHHHHHHHHHhcC-------CC-----ccHHHHHh--cCcHHHHHHHhcCCC
Q 047123 238 ESRKIVFEEGGLGPLLRILE--TGSMPLKEKAAIGVEAITT-------DP-----ENAWAISA--YGGVSVLIEAFRSGT 301 (579)
Q Consensus 238 ~~~~~i~~~g~l~~Lv~lL~--~~~~~v~~~aa~~L~~Ls~-------~~-----~~~~~i~~--~g~i~~Lv~ll~~~~ 301 (579)
+.+..++..=.+...+..+. ..+.+..+..++.+..++. .+ +.+..... .+.++.++..+.+++
T Consensus 266 ~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~ 345 (980)
T 3ibv_A 266 LEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDY 345 (980)
T ss_dssp HHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSS
T ss_pred hhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCc
Confidence 33333333211222232222 3577776666655544431 11 11111111 357888888888888
Q ss_pred HHHHHHHHHHHHHhhcChh-------hHHHHH--HcCCHHHHHHHhcCC------C------H----HHHHHHHHHHHHH
Q 047123 302 ALTQSHAVGAIRNIAAVED-------IKAALA--EEGAVPVLVQSLTSS------S------N----LAQENAADCIATL 356 (579)
Q Consensus 302 ~~~~~~a~~aL~nLs~~~~-------~~~~l~--~~g~v~~Lv~lL~~~------~------~----~v~~~a~~~L~~L 356 (579)
.++-..++..+..+..... ...... =...++.+++-+..+ + . +.|......+..+
T Consensus 346 deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~ 425 (980)
T 3ibv_A 346 DETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTI 425 (980)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 7776666655544432100 011100 011333333333211 1 1 2333333222222
Q ss_pred hcCChhhHHHHHhcCcHHHHH-Hhhc---cCCCChHHHHHHHHHHHHcccc-hh-HHHHH---hhcCcHHHHHHHHHh--
Q 047123 357 AASGEYFRLLIIQERGLQRLM-HLIQ---DSTSSIVTVENALLAISSLSLS-DS-AARIL---SSTTSFIIQLGEFIK-- 425 (579)
Q Consensus 357 a~~~~~~r~~l~~~g~i~~Lv-~ll~---~~~~~~~~~~~A~~aL~~L~~~-~~-~~~l~---~~~~g~i~~L~~lL~-- 425 (579)
+.-++...-... ...+..++ +.+. +.+. ...|.++.+|..++.+ .. ..... ...+..++.+..+++
T Consensus 426 ~~l~~~~~l~~~-~~~i~~~l~~~l~~~~~~~W--~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~ 502 (980)
T 3ibv_A 426 NSIDSSLFSSYM-YSAITSSLSTAATLSPENSW--QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQ 502 (980)
T ss_dssp HHHCHHHHHHHH-HHHHHHHHHHHTTSCHHHHH--HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSS
T ss_pred HhcChHHHHHHH-HHHHHHHHHHHhcccCCCCH--HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCC
Confidence 221211100000 00122211 2222 1123 6688999999998886 21 11100 011135556666665
Q ss_pred ---cCCHHHHHHHHHHHHHhcCChhhH-HHHHHHHHHHHH--hccCCCCHhHHHHHHHHHHHhhcCC
Q 047123 426 ---RGNVLLQQVSSSLLGNLSISDGNK-RAVASCMGSLIK--LMECPKPVGLQEAATDAVLSLLTVR 486 (579)
Q Consensus 426 ---~~~~~v~~~A~~aL~~L~~~~~~~-~~i~~~v~~Lv~--lL~~~~~~~v~~~a~~aL~~L~~~~ 486 (579)
..++.++..+..++.+.+..-... +.+...++.++. .+ ..++..++..|+.++.+++..-
T Consensus 503 i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl-~~~~~~V~~~a~~af~~f~~~~ 568 (980)
T 3ibv_A 503 VCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGI-HNTNERVRPRAWYLFYRFVKSI 568 (980)
T ss_dssp TTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTT-TCCCTTTHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccc-cCCChhHHHHHHHHHHHHHHHh
Confidence 678999999999999998221111 122222555666 55 4566889999999999998643
No 95
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.38 E-value=0.02 Score=59.59 Aligned_cols=245 Identities=15% Similarity=0.113 Sum_probs=155.1
Q ss_pred cHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHH-----cc--------CCHHHHHHHHHHH
Q 047123 205 NVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRIL-----ET--------GSMPLKEKAAIGV 271 (579)
Q Consensus 205 ~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL-----~~--------~~~~v~~~aa~~L 271 (579)
+...|+.-|- ++.-++|--|+.+|+.+...+............ ...++++ +. --..||+.++.+|
T Consensus 175 fcE~L~~DLF-dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtL 252 (800)
T 3oc3_A 175 FFEQISDNLL-SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLL 252 (800)
T ss_dssp TTHHHHHHTT-CSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHH
T ss_pred HHHHHHHHhc-CcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHH
Confidence 4566666666 889999999999999887633221111111111 2333333 21 1356999999999
Q ss_pred HHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHH
Q 047123 272 EAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAAD 351 (579)
Q Consensus 272 ~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~ 351 (579)
+.+ ..-+.. ..++..|+..+.....+++..+.-.|..+.. .-.. -.++++.++..|++.+++|+..|+.
T Consensus 253 GaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~D---LL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 253 SRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKE---FVED--KDGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp HHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGG---GCCC--HHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHH---HHHH--HHHHHHHHHhhcCCcccHHHHHHHH
Confidence 999 422221 5667777776677889999999999988821 1001 2346788888899999999999999
Q ss_pred HHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhcCCHHH
Q 047123 352 CIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIKRGNVLL 431 (579)
Q Consensus 352 ~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~~~~~v 431 (579)
+|.-++. .+.. ...+..+...|.+.++-..........|..|+..+.. ...++..+++|..++++.-..|
T Consensus 322 tLiPIA~-p~~l------~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSV 391 (800)
T 3oc3_A 322 LLCHFPI-TDSL------DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEV 391 (800)
T ss_dssp HHTTSCC-SSTH------HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHH
T ss_pred Hhhhhcc-hhhH------HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHH
Confidence 9999882 2111 2234444444443321113455666777777776320 1112368999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHH
Q 047123 432 QQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVL 480 (579)
Q Consensus 432 ~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~ 480 (579)
|..+..++..+. +...-+.+.+ ++| -..+.+++..+.++..
T Consensus 392 R~AVL~TL~tfL-~~~~LRLIFQ------NIL-LE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 392 RTSILNMVKNLS-EESIDFLVAE------VVL-IEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHTTTCC-CHHHHHHHHH------HHH-HCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hhhHHHHHHH------HHH-hCCcHHHHHHHHHHHH
Confidence 999999998887 2222222222 344 4556788887777653
No 96
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.37 E-value=0.01 Score=61.82 Aligned_cols=244 Identities=12% Similarity=0.114 Sum_probs=155.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHH--hhCcHHHHHHhh--cc----CCC---HHHHHHHHHHHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVA--KEGNVGYLISLL--DF----HHQ---SSIREQAVLALSI 231 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~--~~g~v~~Lv~LL--~~----~~~---~~~~~~A~~aL~~ 231 (579)
+...|+.-|-+..++.|.-|+..|+++.+.......... ..+..-.|+-++ ++ .+| ..|||.|+++|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 667888888999999999999999999865432111101 113233333322 21 122 6899999999999
Q ss_pred hhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHH
Q 047123 232 IVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGA 311 (579)
Q Consensus 232 La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~a 311 (579)
+ ..-++. ..++..++..+....-+++..+.-.|..+. +.... -.++++.++..|++.+.+++..|+.+
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED--KDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH--HHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 8 523332 345555665667778999999999999982 11100 25567888888999999999999999
Q ss_pred HHHhhcChhhHHHHHHcCCHHHHHHHhcCCC--HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHH
Q 047123 312 IRNIAAVEDIKAALAEEGAVPVLVQSLTSSS--NLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVT 389 (579)
Q Consensus 312 L~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~--~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~ 389 (579)
|.-++ .++.-.. ++..+-..|.+.+ .......+..|+.|+..+... ......+|.|..++..... .+
T Consensus 323 LiPIA-~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtIT--SV 391 (800)
T 3oc3_A 323 LCHFP-ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVP--EV 391 (800)
T ss_dssp HTTSC-CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSH--HH
T ss_pred hhhhc-chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcH--HH
Confidence 99888 2222111 2233334443322 123455566777776644321 1123678888888888776 89
Q ss_pred HHHHHHHHHHcccchhHHHHHhhcCcHHHH-HHHHHhcCCHHHHHHHHHHHH
Q 047123 390 VENALLAISSLSLSDSAARILSSTTSFIIQ-LGEFIKRGNVLLQQVSSSLLG 440 (579)
Q Consensus 390 ~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~-L~~lL~~~~~~v~~~A~~aL~ 440 (579)
|..++.+|..+... .++.. +.++|-..+.+++..+..+-.
T Consensus 392 R~AVL~TL~tfL~~-----------~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 392 RTSILNMVKNLSEE-----------SIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHTTTCCCH-----------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-----------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999888732 23332 233455677788877776653
No 97
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.30 E-value=0.24 Score=48.56 Aligned_cols=222 Identities=14% Similarity=0.068 Sum_probs=160.0
Q ss_pred HHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhH----HHHHh-cCcHHHHHHhhccCCCChHHHHHHHHHHH
Q 047123 324 ALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFR----LLIIQ-ERGLQRLMHLIQDSTSSIVTVENALLAIS 398 (579)
Q Consensus 324 ~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r----~~l~~-~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~ 398 (579)
.+...+.+..|+..|..=+-+.+..+..+..++.......+ ..+.+ ...+..|+..-+ ++++--.+-..|+
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe----~~diAl~~G~mLR 148 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE----SPEIALNCGIMLR 148 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG----STTTHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc----cchhHhHHHHHHH
Confidence 45667888888888888788899999999888876543321 22222 222333333222 2356777778888
Q ss_pred Hcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhhHHHHHHH-----HHHHHHhccCCCCHhH
Q 047123 399 SLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLS-ISDGNKRAVASC-----MGSLIKLMECPKPVGL 471 (579)
Q Consensus 399 ~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-----v~~Lv~lL~~~~~~~v 471 (579)
.+..+ .....++.. +.+..+.++++.++-++...|...+..|- .+......+... ....-++| .+++.-.
T Consensus 149 ecir~e~la~~iL~~--~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll-~S~NYVT 225 (341)
T 1upk_A 149 ECIRHEPLAKIILWS--EQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL-HSENYVT 225 (341)
T ss_dssp HHHTSHHHHHHHHHS--GGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT-TCSSHHH
T ss_pred HHHHhHHHHHHHhcc--HHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHh-cCCcchh
Confidence 88888 556667777 77888999999999999999999998887 777666666555 67777899 8889999
Q ss_pred HHHHHHHHHHhhcCCcch---hHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC--hhHHHHHH--HcCchH
Q 047123 472 QEAATDAVLSLLTVRSNR---KELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS--NGCRKRLV--AAGAYQ 544 (579)
Q Consensus 472 ~~~a~~aL~~L~~~~~~~---~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~--~~~r~~i~--~~g~~~ 544 (579)
+..+...|+.|..+..|. ...+.+...+..++.+|.+.+.. ++-.|.-+.--+..++. ++....++ ....+.
T Consensus 226 kRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~-Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~ 304 (341)
T 1upk_A 226 KRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRN-IQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIE 304 (341)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhc-hhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHH
Confidence 999999999999887774 45666677888999999999888 78888887777776663 23333333 244555
Q ss_pred HHHhhhccC
Q 047123 545 HLQKLAETE 553 (579)
Q Consensus 545 ~L~~L~~~~ 553 (579)
.|.++....
T Consensus 305 fl~~f~~d~ 313 (341)
T 1upk_A 305 FLSKFQNDR 313 (341)
T ss_dssp HHHHTTTTC
T ss_pred HHHhCCCCC
Confidence 666665544
No 98
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.04 E-value=1.5 Score=50.22 Aligned_cols=138 Identities=14% Similarity=0.033 Sum_probs=89.6
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcc-CCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcH
Q 047123 339 TSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQD-STSSIVTVENALLAISSLSLS-DSAARILSSTTSF 416 (579)
Q Consensus 339 ~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~-~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~ 416 (579)
.+.+-..++.++.+++.++..-... ....++.++..+.. ..+++.++..++.++..++.. ......+. .+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~---~v 530 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMIN---SV 530 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHT---TT
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHH---HH
Confidence 3446678899999999998643210 02334555554322 112357899999999998876 22123444 47
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHhccCC-CCHhHHHHHHHHHHHhhcCC
Q 047123 417 IIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASCMGSLIKLMECP-KPVGLQEAATDAVLSLLTVR 486 (579)
Q Consensus 417 i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~v~~Lv~lL~~~-~~~~v~~~a~~aL~~L~~~~ 486 (579)
++.++..|.+ +.++..|+.++.+++ ........+.+-+..|..++... -+...+....++++.++...
T Consensus 531 l~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 531 LPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 8888888854 889999999999999 22222222222266677777332 35788999999999998654
No 99
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.02 E-value=0.28 Score=46.09 Aligned_cols=222 Identities=14% Similarity=0.158 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHh-cCCHHHHHHHHccC---------CHH---HHHHHHHHHHHhcCCCccHHHH
Q 047123 218 QSSIREQAVLALSIIVSANDESRKIVFE-EGGLGPLLRILETG---------SMP---LKEKAAIGVEAITTDPENAWAI 284 (579)
Q Consensus 218 ~~~~~~~A~~aL~~La~~~~~~~~~i~~-~g~l~~Lv~lL~~~---------~~~---v~~~aa~~L~~Ls~~~~~~~~i 284 (579)
+++.|+.|+.-|+.=-+..++....+=. -|.+..|++=+-+- +.. -..+|...|..++.+++.+..|
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~F 93 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF 93 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence 3556888866666544423333333333 36666665544321 122 2345666678888999999999
Q ss_pred HhcCcHHHHHHHhcCCC-----HHHHHHHHHHHHHhhc--ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047123 285 SAYGGVSVLIEAFRSGT-----ALTQSHAVGAIRNIAA--VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLA 357 (579)
Q Consensus 285 ~~~g~i~~Lv~ll~~~~-----~~~~~~a~~aL~nLs~--~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La 357 (579)
.+....-.|..++...+ +.++-.+++++..|.. +++.-..+.+...||..++.+..+++-.+..|...+..+-
T Consensus 94 l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 94 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 99998777777777543 3578889999999876 5566677778899999999999999999999999999987
Q ss_pred cCChhhHHHHHh--------cCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHH--HHHHHHhc
Q 047123 358 ASGEYFRLLIIQ--------ERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFII--QLGEFIKR 426 (579)
Q Consensus 358 ~~~~~~r~~l~~--------~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~--~L~~lL~~ 426 (579)
.++... ..+.. ..++..++..+... ++..+.++.+++-..|+.+ ..++.+...-+..+. .+..++ .
T Consensus 174 ~dd~GL-~YiC~t~eRF~av~~vL~~mV~~l~~~-ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lrd~tf~~~l-~ 250 (268)
T 2fv2_A 174 LDDTGL-AYICQTYERFSHVAMILGKMVLQLSKE-PSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVL-K 250 (268)
T ss_dssp HSHHHH-HHHTSSHHHHHHHHHHHHHHHHHTTTS-CCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGTSSTTHHHH-T
T ss_pred ccchhH-HHHHccHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhhChHHHHHH-h
Confidence 765432 22211 12333344433222 2358889999999999888 333333322111110 112222 3
Q ss_pred CCHHHHHHHHHHHHHh
Q 047123 427 GNVLLQQVSSSLLGNL 442 (579)
Q Consensus 427 ~~~~v~~~A~~aL~~L 442 (579)
+|+.++..-...+.|+
T Consensus 251 ~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 251 DDTTTKRWLAQLVKNL 266 (268)
T ss_dssp SCHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHhc
Confidence 5677777766666665
No 100
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.89 E-value=0.87 Score=52.50 Aligned_cols=139 Identities=6% Similarity=-0.068 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccC-----CCHHHHHHHHHHHHHhhccChhhHHHHHhcCC
Q 047123 174 GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFH-----HQSSIREQAVLALSIIVSANDESRKIVFEEGG 248 (579)
Q Consensus 174 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~-----~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~ 248 (579)
.++..+..++.+++.++..-......-.-..+++.|+.++. . +...++..++.+|+..+.--....+.+ ..+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~-~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~v 541 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCV-KKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTV 541 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhh-ccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHH
Confidence 47889999999999998654333222233456778888875 3 224456677788887665111111111 233
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh------cCcHHHHHH----HhcCCCHHHHHHHHHHHHHhhc
Q 047123 249 LGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISA------YGGVSVLIE----AFRSGTALTQSHAVGAIRNIAA 317 (579)
Q Consensus 249 l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~------~g~i~~Lv~----ll~~~~~~~~~~a~~aL~nLs~ 317 (579)
+..|+..+.+.++.++..||+++.+|+. +++..+.. ..-++.++. ....-+...+.....++..+..
T Consensus 542 l~~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 542 ILKLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4455555666678999999999999995 45555542 123444443 3334456666777777777765
No 101
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.42 E-value=0.27 Score=46.12 Aligned_cols=146 Identities=16% Similarity=0.124 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCC-----HHHHHHHHHHHHHhhcc-ChhhHHHHHhcCCHHHHH
Q 047123 180 KKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQ-----SSIREQAVLALSIIVSA-NDESRKIVFEEGGLGPLL 253 (579)
Q Consensus 180 ~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~-----~~~~~~A~~aL~~La~~-~~~~~~~i~~~g~l~~Lv 253 (579)
..|+..|..+++ +++.+..+.+....-.|.-+|+ ..+ .-.|..++.+++.+... +++.-..+.+...+|..+
T Consensus 74 cnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~-t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 74 CNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLH-TVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHH-CCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhc-cccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 455666666664 7889999998887777777887 443 46888899999998852 556667778889999999
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh--------cCcHHHHHH-HhcCCCHHHHHHHHHHHHHhhcChhhHHH
Q 047123 254 RILETGSMPLKEKAAIGVEAITTDPENAWAISA--------YGGVSVLIE-AFRSGTALTQSHAVGAIRNIAAVEDIKAA 324 (579)
Q Consensus 254 ~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~--------~g~i~~Lv~-ll~~~~~~~~~~a~~aL~nLs~~~~~~~~ 324 (579)
+.++.|+.-.+..|..++.++-.++..-.-+.+ ..++..++. +.+..++.+.++.++|-..|+.++..++.
T Consensus 152 rime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~a 231 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREA 231 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999998765543333322 123333443 34567889999999999999999988887
Q ss_pred HHH
Q 047123 325 LAE 327 (579)
Q Consensus 325 l~~ 327 (579)
+..
T Consensus 232 L~~ 234 (268)
T 2fv2_A 232 LRQ 234 (268)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 102
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.38 E-value=2.1 Score=44.00 Aligned_cols=165 Identities=17% Similarity=0.157 Sum_probs=111.2
Q ss_pred ccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHH
Q 047123 172 QIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGP 251 (579)
Q Consensus 172 ~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~ 251 (579)
..|+...+.-|+..|....+.-|+... .++..++.|.+ +.+..+|..|.+.|-.+|. + ++...+ ...
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcE-Ded~~IR~qaik~Lp~~ck-~-~~i~ki-----aDv 104 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCE-DEDVSIRRQAIKELPQFAT-G-ENLPRV-----ADI 104 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHT-CSSHHHHHHHHHHGGGGCC-T-TCHHHH-----HHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHh-cccHHHHHHHHHhhHHHhh-h-hhhhhH-----HHH
Confidence 357889999999999999888777644 36788999999 9999999999999999999 5 554444 678
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc--ChhhHHHHHHc
Q 047123 252 LLRILETGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAA--VEDIKAALAEE 328 (579)
Q Consensus 252 Lv~lL~~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~--~~~~~~~l~~~ 328 (579)
|+++|.+.++.-...+-.+|..|-. ++ .+.+..|+..+..+++.+++.++..|..-.. ..+.-..-.+.
T Consensus 105 L~QlLqtdd~~E~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~ 176 (507)
T 3u0r_A 105 LTQLLQTDDSAEFNLVNNALLSIFKMDA--------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEE 176 (507)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHH
Confidence 9999998887767777777766653 22 3456778877777888889888877743322 11111111122
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047123 329 GAVPVLVQSLTSSSNLAQENAADCIATLA 357 (579)
Q Consensus 329 g~v~~Lv~lL~~~~~~v~~~a~~~L~~La 357 (579)
-++..+.+.|.+-+..=-...+.+|..+-
T Consensus 177 ~i~~~ikK~L~DVT~~EF~L~m~lL~~lk 205 (507)
T 3u0r_A 177 LILTESKKVLEDVTGEEFVLFMKILSGLK 205 (507)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhcc
Confidence 23344555565544433344445554443
No 103
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.49 Score=45.55 Aligned_cols=183 Identities=13% Similarity=0.051 Sum_probs=117.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcChh---hHHHHH--HcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh---hH
Q 047123 293 LIEAFRSGTALTQSHAVGAIRNIAAVED---IKAALA--EEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEY---FR 364 (579)
Q Consensus 293 Lv~ll~~~~~~~~~~a~~aL~nLs~~~~---~~~~l~--~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~---~r 364 (579)
|-+-|.+.+...|..+...|..+..... ...... -...++.+-..+.+.+..++..++.++..++..-.. .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5567888999999999998877654211 111111 122455666778899999999999999988753211 11
Q ss_pred --HHHHhcCcHHHHHHh-hccCCCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047123 365 --LLIIQERGLQRLMHL-IQDSTSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLG 440 (579)
Q Consensus 365 --~~l~~~g~i~~Lv~l-l~~~~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~ 440 (579)
....-...++.|+.- +.+.. ..++..+..++..++.. .... .++..+...+.+.++.++..++..|.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k--~~~~~~a~~~l~~~~~~~~~~~-------~~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSR--ATTKTQSMSCILSLCGLDTSIT-------QSVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCC--HHHHHHHHHHHHHHHHTSSSSH-------HHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCcc--HHHHHHHHHHHHHHHHhcCcHH-------HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 111123445666543 43333 47888888888777654 1111 23445666778899999999888888
Q ss_pred HhcC----ChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123 441 NLSI----SDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTV 485 (579)
Q Consensus 441 ~L~~----~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~ 485 (579)
++.. ..-.-+.+... ++.+.+++ .+.+..||..|..++..+-..
T Consensus 165 ~~l~~fg~~~~~~k~~l~~i~~~l~k~l-~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFLPELLKHVPQLA-GHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHTTTTCCHHHHHHHHGGGHHHHH-TCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCcCCchhHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHH
Confidence 7751 11112233333 77788889 777899999999999988753
No 104
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.00 E-value=0.57 Score=45.80 Aligned_cols=182 Identities=10% Similarity=-0.038 Sum_probs=111.1
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHH----HHHcc-CCHHHHHHHHHHHHHhcCCCcc
Q 047123 206 VGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLL----RILET-GSMPLKEKAAIGVEAITTDPEN 280 (579)
Q Consensus 206 v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv----~lL~~-~~~~v~~~aa~~L~~Ls~~~~~ 280 (579)
+..+.++++ .+. +.+--++..++.+.. ++.....+.+.+.-..++ ..+.. +.+..+..++++++|+-.++..
T Consensus 105 l~~l~kil~-WP~-~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g 181 (304)
T 3ebb_A 105 LQILWKAIN-CPE-DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAG 181 (304)
T ss_dssp HHHHHHHHT-SCT-TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHH
T ss_pred HHHHHHHHc-CCH-HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchh
Confidence 556666665 443 344456666666666 776666665543333343 33322 3566789999999999988877
Q ss_pred HHHHHhc--CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChh--h-HHHHHHcCCHHHHHHHhc-CCCHHHHHHHHHHHH
Q 047123 281 AWAISAY--GGVSVLIEAFRSGTALTQSHAVGAIRNIAAVED--I-KAALAEEGAVPVLVQSLT-SSSNLAQENAADCIA 354 (579)
Q Consensus 281 ~~~i~~~--g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~--~-~~~l~~~g~v~~Lv~lL~-~~~~~v~~~a~~~L~ 354 (579)
+..+... .+++.+...+.+.+..++..++..+.|++.... . .+. ...+...+..++. ..+.+....++-+|+
T Consensus 182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~~l~~il~~~~d~EalyR~LvALG 259 (304)
T 3ebb_A 182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG--KAQCLSLISTILEVVQDLEATFRLLVALG 259 (304)
T ss_dssp HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 7766542 355555555556788999999999999986211 0 011 1113344444453 357899999999999
Q ss_pred HHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHH
Q 047123 355 TLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENA 393 (579)
Q Consensus 355 ~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A 393 (579)
++...+...++....-|....+-++.....+ .++.+.+
T Consensus 260 tL~~~~~~~~~lak~l~~~~~v~~~~~~~~~-~kv~~~~ 297 (304)
T 3ebb_A 260 TLISDDSNAVQLAKSLGVDSQIKKYSSVSEP-AKVSECC 297 (304)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHGGGGGGCCSS-HHHHHHH
T ss_pred HHHhCChhHHHHHHHcCHHHHHHHHHhCCCc-hhHHHHH
Confidence 9998776655544445544444444444232 4544443
No 105
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.83 E-value=1.2 Score=43.63 Aligned_cols=117 Identities=16% Similarity=0.139 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--Chh-hHHHHHHHHHHHHHh
Q 047123 387 IVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI--SDG-NKRAVASCMGSLIKL 462 (579)
Q Consensus 387 ~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~--~~~-~~~~i~~~v~~Lv~l 462 (579)
+..+..+++++.|+-.. ..+..++.....++..+...+.+.+..++..++.++.|++. ..+ ......+.+..+..+
T Consensus 162 p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~i 241 (304)
T 3ebb_A 162 PANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTI 241 (304)
T ss_dssp HHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 46788999999999887 33444443311345555555556788999999999999991 110 011111115555566
Q ss_pred ccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHh
Q 047123 463 MECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQ 504 (579)
Q Consensus 463 L~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~ 504 (579)
++..++.+....+..||++|+..+...+.+.+ .-++...++
T Consensus 242 l~~~~d~EalyR~LvALGtL~~~~~~~~~lak-~l~~~~~v~ 282 (304)
T 3ebb_A 242 LEVVQDLEATFRLLVALGTLISDDSNAVQLAK-SLGVDSQIK 282 (304)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHGG
T ss_pred HhccCCHHHHHHHHHHHHHHHhCChhHHHHHH-HcCHHHHHH
Confidence 65667899999999999999987666666665 344444433
No 106
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=94.57 E-value=8.8 Score=44.33 Aligned_cols=350 Identities=11% Similarity=0.069 Sum_probs=180.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccCh--------hhH-----HHHHh--hCcHHHHHHhhccCCCHHHHHHHHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDD--------KSA-----AVVAK--EGNVGYLISLLDFHHQSSIREQAVL 227 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~--------~~~-----~~i~~--~g~v~~Lv~LL~~~~~~~~~~~A~~ 227 (579)
+++.++..++ .++..+..++..|..++.+-. ..+ ..+.. ...+..+...+...++..++..++.
T Consensus 139 ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~ 217 (1049)
T 3m1i_C 139 FIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLE 217 (1049)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6888888887 555555556666666553211 011 11221 1223444455552456788999999
Q ss_pred HHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC--Ccc----HHHHHh--cCcHHHHHH----
Q 047123 228 ALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD--PEN----AWAISA--YGGVSVLIE---- 295 (579)
Q Consensus 228 aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~--~~~----~~~i~~--~g~i~~Lv~---- 295 (579)
++.....-.+ ...+.....++.+++.+- .+++++..|+.+|..+... ++. ...+.. .+.+..+..
T Consensus 218 ~l~~~l~wi~--~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p 294 (1049)
T 3m1i_C 218 SLLRYLHWIP--YRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMP 294 (1049)
T ss_dssp HHHHHTTTSC--THHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhhCC--HHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCC
Confidence 9987654122 223455566666663222 3788999999999998843 121 111111 122222211
Q ss_pred -------Hh---cCCCHHHHHHHHHHHHHhhc--------ChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047123 296 -------AF---RSGTALTQSHAVGAIRNIAA--------VEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLA 357 (579)
Q Consensus 296 -------ll---~~~~~~~~~~a~~aL~nLs~--------~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La 357 (579)
.. .+.+.+.....+..+..+.. .++.+..+ ...++.++......+.++...++.....++
T Consensus 295 ~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~v~~~~lefw~~l~ 372 (1049)
T 3m1i_C 295 VTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIEERELFKTTLDYWHNLV 372 (1049)
T ss_dssp TTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred CcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 11 12233344444444433321 11112221 134566666666677888888888877776
Q ss_pred c----CCh---hhHHHHHhcCcHHHHHHhhccCCC-----------------Ch---HHHHHHHHHHHHcccchhHHHHH
Q 047123 358 A----SGE---YFRLLIIQERGLQRLMHLIQDSTS-----------------SI---VTVENALLAISSLSLSDSAARIL 410 (579)
Q Consensus 358 ~----~~~---~~r~~l~~~g~i~~Lv~ll~~~~~-----------------~~---~~~~~A~~aL~~L~~~~~~~~l~ 410 (579)
. ... ..+..+ ...++.++..+....+ +. ..+..+..+|..++... ...++
T Consensus 373 ~~l~~~~~~~~~~~~~l--~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~-~~~~l 449 (1049)
T 3m1i_C 373 ADLFYEPLKKHIYEEIC--SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLN-VIDTE 449 (1049)
T ss_dssp HHHHHSTTCGGGGHHHH--HHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHC-HHHHH
T ss_pred HHHHhchhHHHHHHHHH--HHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccC-HHHHH
Confidence 5 111 111111 1223444443321100 00 12334556666666331 11122
Q ss_pred hhcCcHHHHHHHHHhc--CCHHHHHHHHHHHHHhc--CChhhHHHHHHH-HHHHHHhccCC----CCHhHHHHHHHHHHH
Q 047123 411 SSTTSFIIQLGEFIKR--GNVLLQQVSSSLLGNLS--ISDGNKRAVASC-MGSLIKLMECP----KPVGLQEAATDAVLS 481 (579)
Q Consensus 411 ~~~~g~i~~L~~lL~~--~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~-v~~Lv~lL~~~----~~~~v~~~a~~aL~~ 481 (579)
.. +.+.+-..+.+ .+...++.++.+++.++ ......+.+... ++.|..+.+.. .++.++..++.+++.
T Consensus 450 ~~---v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgr 526 (1049)
T 3m1i_C 450 EI---MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQ 526 (1049)
T ss_dssp HH---HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHH
Confidence 21 33334444442 45677889999999998 222222333333 66666654211 234445467788887
Q ss_pred hhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhC
Q 047123 482 LLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLG 527 (579)
Q Consensus 482 L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~ 527 (579)
++.-......+. ...++.+++.|.+.++. ++..|+.++.+|+.
T Consensus 527 y~~~~~~~~~~l--~~vl~~ll~~l~~~~~~-V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 527 YPRFLKAHWNFL--RTVILKLFEFMHETHEG-VQDMACDTFIKIVQ 569 (1049)
T ss_dssp CHHHHHHCHHHH--HHHHHHHHHHTTSSCHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHH--HHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHH
Confidence 764322223333 34567788888876666 88889999999986
No 107
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=94.49 E-value=9.1 Score=44.18 Aligned_cols=295 Identities=13% Similarity=0.121 Sum_probs=156.3
Q ss_pred CCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHH-hhccCCCHHHHHHHHHHHHHhhccC-hhh----HHHHHh--
Q 047123 174 GGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLIS-LLDFHHQSSIREQAVLALSIIVSAN-DES----RKIVFE-- 245 (579)
Q Consensus 174 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~-LL~~~~~~~~~~~A~~aL~~La~~~-~~~----~~~i~~-- 245 (579)
++.+.+..++.++.....--+ ...+.+...++.+.+ ++. ++.++..|+.+|..+.... +.. ...+..
T Consensus 207 ~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l~---~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~ 281 (1049)
T 3m1i_C 207 SSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFMT---SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF 281 (1049)
T ss_dssp CCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHHH---SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhCC---CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Confidence 467888999999988765333 223455677777774 443 6899999999999888621 111 111111
Q ss_pred cCCHHHHHH-----------HH---ccCCHHHHHHHHHHHHHhcC--------CCccHHHHHhcCcHHHHHHHhcCCCHH
Q 047123 246 EGGLGPLLR-----------IL---ETGSMPLKEKAAIGVEAITT--------DPENAWAISAYGGVSVLIEAFRSGTAL 303 (579)
Q Consensus 246 ~g~l~~Lv~-----------lL---~~~~~~v~~~aa~~L~~Ls~--------~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 303 (579)
.+.+..+.. .. .+.+.+.....+..+..+.. .++....+ ...++.++......+..
T Consensus 282 ~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~ 359 (1049)
T 3m1i_C 282 QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIEERE 359 (1049)
T ss_dssp HHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCcHH
Confidence 122222211 11 11234444455555544331 11111111 23566666666677777
Q ss_pred HHHHHHHHHHHhhc----Chhh----HHHHHHcCCHHHHHHHhcCC-------------------CH---HHHHHHHHHH
Q 047123 304 TQSHAVGAIRNIAA----VEDI----KAALAEEGAVPVLVQSLTSS-------------------SN---LAQENAADCI 353 (579)
Q Consensus 304 ~~~~a~~aL~nLs~----~~~~----~~~l~~~g~v~~Lv~lL~~~-------------------~~---~v~~~a~~~L 353 (579)
+...++.....++. .+.. +..+. ..++.++..+..+ +. ..+..+..+|
T Consensus 360 v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~--~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L 437 (1049)
T 3m1i_C 360 LFKTTLDYWHNLVADLFYEPLKKHIYEEICS--QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL 437 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCGGGGHHHHH--HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHH--HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHH
Confidence 77777766666654 2211 11111 1344444444211 11 2344556666
Q ss_pred HHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hh-HHHHHhhcCcHHHHHHHHHhc----
Q 047123 354 ATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DS-AARILSSTTSFIIQLGEFIKR---- 426 (579)
Q Consensus 354 ~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~-~~~l~~~~~g~i~~L~~lL~~---- 426 (579)
..++.-.+. .+. .-..+.+-+.+.....+-..++.++.++..++.. .. ...++. .+++.|..+...
T Consensus 438 ~~l~~~~~~---~~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~---~v~~~l~~l~~~~~~~ 510 (1049)
T 3m1i_C 438 VYLTHLNVI---DTE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV---TVIKDLLDLTVKKRGK 510 (1049)
T ss_dssp HHHHHHCHH---HHH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH---HHHHHHHHHTTSSCSH
T ss_pred HHHHccCHH---HHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH---HHHHHHHHHHhhhccc
Confidence 666642221 110 1112333334433222347899999999999875 22 122233 255555554332
Q ss_pred -CCHHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123 427 -GNVLLQQVSSSLLGNLSIS-DGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTV 485 (579)
Q Consensus 427 -~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~ 485 (579)
.++.++..+++++...+.. ....+.+...++.|+..+ .+.+..|+..|+.++.+++..
T Consensus 511 ~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l-~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 511 DNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFM-HETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHH
Confidence 2334444577788777621 111223333388888888 666899999999999999974
No 108
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.44 E-value=5.2 Score=41.14 Aligned_cols=175 Identities=11% Similarity=0.082 Sum_probs=113.4
Q ss_pred cCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHH
Q 047123 258 TGSMPLKEKAAIGVEAITT-DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQ 336 (579)
Q Consensus 258 ~~~~~v~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~ 336 (579)
.++...+.-|+..+.+.-. .|+... .++..++.+|.+++..+|..|+..|-.+|.+ +.... ++.+|++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~Q 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILTQ 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHHH
Confidence 3578899999999988774 555443 2569999999999999999999999999988 44433 4578999
Q ss_pred HhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc---hhHHHHHhhc
Q 047123 337 SLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS---DSAARILSST 413 (579)
Q Consensus 337 lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~---~~~~~l~~~~ 413 (579)
+|..+++.-...+-.+|..+-..++. +.+..+...+..+. +.+|+.+...|..=... +....-++.
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~--e~~Rer~lkFi~~kl~~l~~~~l~~E~E~- 176 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGE--DIVRERAIKFLSTKLKTLPDEVLTKEVEE- 176 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSC--HHHHHHHHHHHHHHGGGSCTTTSCHHHHH-
T ss_pred HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccc--hHHHHHHHHHHHHHHhhcchhhccHHHHH-
Confidence 99988887677777777776665543 34555555555554 37888877777543332 111122222
Q ss_pred CcHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH
Q 047123 414 TSFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC 455 (579)
Q Consensus 414 ~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~ 455 (579)
-++..+.+.|+.-+.+--.....+|..+. .+...++.+.+.
T Consensus 177 -~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~i 219 (507)
T 3u0r_A 177 -LILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVEL 219 (507)
T ss_dssp -HHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHH
T ss_pred -HHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHH
Confidence 24445566665555544344445555554 455555555444
No 109
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.35 E-value=4.3 Score=39.78 Aligned_cols=215 Identities=11% Similarity=0.067 Sum_probs=151.8
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-c----cHHHHHh-cCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 047123 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDP-E----NAWAISA-YGGVSVLIEAFRSGTALTQSHAVGAIRNIA 316 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~-~----~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs 316 (579)
+...+.+..|+..|..-+-+.+..++.+..++.... . ...-+.. ..++..|+.-- +++++--.+-..|+...
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLReci 151 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHH
Confidence 344688889999998889999999999888887432 1 2223332 22444444433 34455667777788888
Q ss_pred cChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh---cCcHHHHHHhhccCCCChHHHHHH
Q 047123 317 AVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQ---ERGLQRLMHLIQDSTSSIVTVENA 393 (579)
Q Consensus 317 ~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~---~g~i~~Lv~ll~~~~~~~~~~~~A 393 (579)
.++.....+...+.+-.+.+++..++=++...|..++..+-............ +......-+++.+++. -.+..+
T Consensus 152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NY--VTkRQS 229 (341)
T 1upk_A 152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENY--VTKRQS 229 (341)
T ss_dssp TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSH--HHHHHH
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcc--hhHHHH
Confidence 89998888888888889999999999999999999999887655443334443 2345666778888776 899999
Q ss_pred HHHHHHcccc-hhHHHHHhh--cCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcC----ChhhHHHHHHHHHHHHH
Q 047123 394 LLAISSLSLS-DSAARILSS--TTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSI----SDGNKRAVASCMGSLIK 461 (579)
Q Consensus 394 ~~aL~~L~~~-~~~~~l~~~--~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~----~~~~~~~i~~~v~~Lv~ 461 (579)
+..|+.|-.. .+...+... ++.-+..+..+|++.+..+|.+|-.+..-... +++....+...=+.|++
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~ 304 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIE 304 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHH
Confidence 9999999876 333333221 23557889999999999999999999888773 34555555554333333
No 110
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=93.82 E-value=11 Score=43.00 Aligned_cols=285 Identities=11% Similarity=0.011 Sum_probs=157.0
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCC--CHHHHHHHHHHHHHhhccChhh----HHHHHhcCC
Q 047123 175 GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHH--QSSIREQAVLALSIIVSANDES----RKIVFEEGG 248 (579)
Q Consensus 175 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~--~~~~~~~A~~aL~~La~~~~~~----~~~i~~~g~ 248 (579)
+++.|.+|-..|..+-+. .++......+|..++ ++.+|--|+..|.+....-+.. ....+....
T Consensus 21 d~~~r~~A~~~L~~~q~s----------p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~l 90 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSS----------STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSV 90 (980)
T ss_dssp CHHHHHHHHHHHHHHHHS----------TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC----------hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHH
Confidence 788899998888776432 345666777776222 6899999998888554312222 223333333
Q ss_pred HHHHHHHHc-cCCHHHHHHHHHHHHHhcCC--CccHHHHHhcCcHHHHHHHhcCCCH-HHHHHHHHHHHHhhc---C---
Q 047123 249 LGPLLRILE-TGSMPLKEKAAIGVEAITTD--PENAWAISAYGGVSVLIEAFRSGTA-LTQSHAVGAIRNIAA---V--- 318 (579)
Q Consensus 249 l~~Lv~lL~-~~~~~v~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~nLs~---~--- 318 (579)
+..+.+.-. .++..++.+.+.++..+... ++ .-.+.++.|+.+++.++. ......+.+|..++. +
T Consensus 91 l~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~-----~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~ 165 (980)
T 3ibv_A 91 WSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS-----NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLV 165 (980)
T ss_dssp HHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT-----TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc-----cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhccc
Confidence 444433110 23567899999999988732 21 124567778887776443 333444444443321 0
Q ss_pred ---h-------hhHHHHHHcC---CHHHHHHHh----cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhc
Q 047123 319 ---E-------DIKAALAEEG---AVPVLVQSL----TSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQ 381 (579)
Q Consensus 319 ---~-------~~~~~l~~~g---~v~~Lv~lL----~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~ 381 (579)
. +.++.+.+.. +++....++ .+.++.++..++.||......-+ -..+.+...++.+.+++.
T Consensus 166 ~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~L~ 243 (980)
T 3ibv_A 166 LKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSFLQ 243 (980)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHHTT
T ss_pred ccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHHcC
Confidence 0 0123333221 123333333 34678899999999999877533 245566778888888876
Q ss_pred cCCCChHHHHHHHHHHHHcccc----hhHHHHHhhcCcHHHHHHHHHh--cCCHHHHHHHHHHHHHhc-------CC---
Q 047123 382 DSTSSIVTVENALLAISSLSLS----DSAARILSSTTSFIIQLGEFIK--RGNVLLQQVSSSLLGNLS-------IS--- 445 (579)
Q Consensus 382 ~~~~~~~~~~~A~~aL~~L~~~----~~~~~l~~~~~g~i~~L~~lL~--~~~~~v~~~A~~aL~~L~-------~~--- 445 (579)
. +..+..|+.+|..+... +....++.. =.+...+..+. ..+.+..+.-++.+..++ ..
T Consensus 244 ~----~~~r~~A~ecL~ei~~k~~~~~~k~~li~~--l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~ 317 (980)
T 3ibv_A 244 I----EELRCAACETMTEIVNKKMKPLEKLNLLNI--LNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSE 317 (980)
T ss_dssp S----HHHHHHHHHHHHHHHHSCCCHHHHHHHHHH--HHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC-
T ss_pred C----hHHHHHHHHHHHHHHHcCCChhhHHHHHHH--HhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccc
Confidence 5 48999999999998876 222223322 11111121122 456666554444444332 11
Q ss_pred --hhhHHHHHHH----HHHHHHhccCCCCHhHHHHHHHHHHHhh
Q 047123 446 --DGNKRAVASC----MGSLIKLMECPKPVGLQEAATDAVLSLL 483 (579)
Q Consensus 446 --~~~~~~i~~~----v~~Lv~lL~~~~~~~v~~~a~~aL~~L~ 483 (579)
++.+...... ++.++..+ ..++.++-..+...+..+.
T Consensus 318 ~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw~~~l 360 (980)
T 3ibv_A 318 LSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFLSDLL 360 (980)
T ss_dssp -CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHH
Confidence 1222211122 77777777 4455666665555555443
No 111
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=93.60 E-value=13 Score=42.73 Aligned_cols=294 Identities=13% Similarity=0.122 Sum_probs=155.0
Q ss_pred cCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHH-HhhccCCCHHHHHHHHHHHHHhhccC---h--hhHHHHHh-
Q 047123 173 IGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLI-SLLDFHHQSSIREQAVLALSIIVSAN---D--ESRKIVFE- 245 (579)
Q Consensus 173 ~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv-~LL~~~~~~~~~~~A~~aL~~La~~~---~--~~~~~i~~- 245 (579)
.++++....++.++....+- -....+...+.++.+. .+|. ++..++.|+.+|..+.... + .+...+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~W--I~i~~i~~~~ll~~l~~~~L~---~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~l 280 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLHW--IPYRYIYETNILELLSTKFMT---SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF 280 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTTT--SCTHHHHSSSHHHHHHTHHHH---SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh--CCHHHhcchhHHHHHHHHHcC---CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHH
Confidence 35667778889999888753 2345667788999999 8887 5789999999999987621 1 12222210
Q ss_pred -cCCHHHH-----------HHHHc---cCCHHHHHHHHHHHHHhcC--------CCccHHHHHhcCcHHHHHHHhcCCCH
Q 047123 246 -EGGLGPL-----------LRILE---TGSMPLKEKAAIGVEAITT--------DPENAWAISAYGGVSVLIEAFRSGTA 302 (579)
Q Consensus 246 -~g~l~~L-----------v~lL~---~~~~~v~~~aa~~L~~Ls~--------~~~~~~~i~~~g~i~~Lv~ll~~~~~ 302 (579)
.+.+..+ -..+. ..+.+.....++.+..+.. +++.+..+ ..++..|+.....++.
T Consensus 281 f~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l--~~~l~~Ll~~~~~~d~ 358 (1023)
T 4hat_C 281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIEER 358 (1023)
T ss_dssp HHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHH--HHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHH--HHHHHHHHHhhCCCcH
Confidence 0111111 11121 2245666666666655542 11111111 1123455555455666
Q ss_pred HHHHHHHHHHHHhhc--C-hhhHHHHH---HcCCHHHHHHHhcCCC--------------------H-HHHH-HHHHHHH
Q 047123 303 LTQSHAVGAIRNIAA--V-EDIKAALA---EEGAVPVLVQSLTSSS--------------------N-LAQE-NAADCIA 354 (579)
Q Consensus 303 ~~~~~a~~aL~nLs~--~-~~~~~~l~---~~g~v~~Lv~lL~~~~--------------------~-~v~~-~a~~~L~ 354 (579)
++...++..=..++. . ++.+.... -...++.+++-+..+. + .... ..-.+|.
T Consensus 359 ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~ 438 (1023)
T 4hat_C 359 ELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV 438 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHH
Confidence 665555543233332 1 10010000 0113344444332211 0 0111 0113333
Q ss_pred HHhcCChhhHHHHHhcCcHHHHHH----hhccCCCChHHHHHHHHHHHHcccc--hh-HHHHHhhcCcHHHHHHHHHhc-
Q 047123 355 TLAASGEYFRLLIIQERGLQRLMH----LIQDSTSSIVTVENALLAISSLSLS--DS-AARILSSTTSFIIQLGEFIKR- 426 (579)
Q Consensus 355 ~La~~~~~~r~~l~~~g~i~~Lv~----ll~~~~~~~~~~~~A~~aL~~L~~~--~~-~~~l~~~~~g~i~~L~~lL~~- 426 (579)
.++.-.. ...++.++. .+...+.+=..++.++.+++.++.+ +. ...++.. +++.|+.+++.
T Consensus 439 ~l~~l~~--------~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~---vi~~Ll~l~~~~ 507 (1023)
T 4hat_C 439 YLTHLNV--------IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVT---VIKDLLDLCVKK 507 (1023)
T ss_dssp HHHHHCH--------HHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH---HHHHHHHHHHHC
T ss_pred HHhccCH--------HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHH---HHHHHHHhhhcc
Confidence 3322111 122333333 3333222237899999999999987 22 3445554 78888888864
Q ss_pred ----CCHHHHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123 427 ----GNVLLQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTV 485 (579)
Q Consensus 427 ----~~~~v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~ 485 (579)
....++..+++++++.+..-.....+.+. +..|+..+ ..+++.++.+|+.++.+|+..
T Consensus 508 ~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l-~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 508 RGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFM-HETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp CSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHH
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHHH
Confidence 22234456667777776211111223343 78888888 666789999999999999863
No 112
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.52 E-value=3.7 Score=39.04 Aligned_cols=173 Identities=13% Similarity=0.066 Sum_probs=109.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhc--cCCCChHHHHHHHHHHHHcccc--h----
Q 047123 333 VLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQ--DSTSSIVTVENALLAISSLSLS--D---- 404 (579)
Q Consensus 333 ~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~--~~~~~~~~~~~A~~aL~~L~~~--~---- 404 (579)
.+...|.+.+..-+..++..|......++. .+. ..++.++.++. -.+.+..+...++.+|..+... +
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344455555666667777777665543321 111 12333344321 1122346777777777766443 1
Q ss_pred hHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHh
Q 047123 405 SAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSL 482 (579)
Q Consensus 405 ~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L 482 (579)
....-. . -++|.|++=+.+....++..+..++..+.. ..... ++.++.-+ .+++...|+.++..+.++
T Consensus 125 ~~~~ea-~--~~lP~LveKlGd~k~~vR~~~r~il~~l~~------v~~~~~v~~~l~~g~-ksKN~R~R~e~l~~l~~l 194 (266)
T 2of3_A 125 MSQEEV-S--AFVPYLLLKTGEAKDNMRTSVRDIVNVLSD------VVGPLKMTPMLLDAL-KSKNARQRSECLLVIEYY 194 (266)
T ss_dssp CCHHHH-H--HHHHHHHHGGGCSSHHHHHHHHHHHHHHHH------HHCHHHHHHHHHHGG-GCSCHHHHHHHHHHHHHH
T ss_pred chHHHH-H--HHHHHHHHHhCCChHHHHHHHHHHHHHHHH------HCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 111111 2 367888888888888899988888877751 01111 67788888 889999999999999999
Q ss_pred hcCCcchhHHHhhcccH---HHHHhhcCCCchhhhhHHHHHHHHHHh
Q 047123 483 LTVRSNRKELVRDEKSV---MRLMQMLDPKNEALNKKFPVMVTAAVL 526 (579)
Q Consensus 483 ~~~~~~~~~~~~~~~~i---~~Lv~lL~~~~~~~~k~~av~~L~~L~ 526 (579)
...+.-. ...++ +.+.+++.+++.. ++..|+.++..+-
T Consensus 195 i~~~G~~-----~~~~l~~~~~ia~ll~D~d~~-VR~aAl~~lve~y 235 (266)
T 2of3_A 195 ITNAGIS-----PLKSLSVEKTVAPFVGDKDVN-VRNAAINVLVACF 235 (266)
T ss_dssp HHHHCSG-----GGGGGCHHHHHGGGGGCSSHH-HHHHHHHHHHHHH
T ss_pred HHhcCCC-----ccccccchHHHHHHHcCCCHH-HHHHHHHHHHHHH
Confidence 7543222 14578 9999999998888 8889888776554
No 113
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=92.93 E-value=0.046 Score=51.84 Aligned_cols=66 Identities=11% Similarity=0.054 Sum_probs=40.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhc
Q 047123 167 IFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEE 246 (579)
Q Consensus 167 Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~ 246 (579)
+..++++.++.+|..++..| ..+.|..+++ ++++.+|..++..+ .
T Consensus 79 l~~L~~D~~~~VR~~aA~~L------------------~~~~L~~ll~-D~d~~VR~~aA~~l---~------------- 123 (244)
T 1lrv_A 79 LTPLIRDSDEVVRRAVAYRL------------------PREQLSALMF-DEDREVRITVADRL---P------------- 123 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS------------------CSGGGGGTTT-CSCHHHHHHHHHHS---C-------------
T ss_pred HHHHccCcCHHHHHHHHHHC------------------CHHHHHHHHc-CCCHHHHHHHHHhC---C-------------
Confidence 34445566666666666432 1245667777 88888888876632 1
Q ss_pred CCHHHHHHHHccCCHHHHHHHHH
Q 047123 247 GGLGPLLRILETGSMPLKEKAAI 269 (579)
Q Consensus 247 g~l~~Lv~lL~~~~~~v~~~aa~ 269 (579)
.+.|..++++++..|+..++.
T Consensus 124 --~~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 124 --LEQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp --TGGGGGGTTCSSHHHHHHHHH
T ss_pred --HHHHHHHHcCCCHHHHHHHHH
Confidence 123455566777888877776
No 114
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=92.57 E-value=9.1 Score=44.24 Aligned_cols=185 Identities=14% Similarity=0.112 Sum_probs=115.0
Q ss_pred HHHHHHHHcc----CCHHHHHHHHHHHHHhc----CC-CccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh
Q 047123 249 LGPLLRILET----GSMPLKEKAAIGVEAIT----TD-PENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVE 319 (579)
Q Consensus 249 l~~Lv~lL~~----~~~~v~~~aa~~L~~Ls----~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~ 319 (579)
+..+..++++ .++.++..+.-+++.|. .+ +.|...++ ......|.+.+..++..-+..++.+|.|+...
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p- 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAGQP- 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-
Confidence 4445555554 36677777777777765 22 22211111 11233444555677777888899999997652
Q ss_pred hhHHHHHHcCCHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHH
Q 047123 320 DIKAALAEEGAVPVLVQSLTS-------SSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVEN 392 (579)
Q Consensus 320 ~~~~~l~~~g~v~~Lv~lL~~-------~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~ 392 (579)
..++.+..++.. ....++..|+.+|.+++...+. .+-+.++++..+.....++|..
T Consensus 471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~--------~v~~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR--------KVQEIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH--------HHHHHHHHHHHCTTSCHHHHHH
T ss_pred ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH--------HHHHHHHHHhcCCCCChHHHHH
Confidence 246666677632 2357889999999999875542 1245667777666555689998
Q ss_pred HHHHHHHcccchhHHHHHhhcCcHHHHHHHHHhc-CCHHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHhc
Q 047123 393 ALLAISSLSLSDSAARILSSTTSFIIQLGEFIKR-GNVLLQQVSSSLLGNLS--ISDGNKRAVASCMGSLIKLM 463 (579)
Q Consensus 393 A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~~-~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~v~~Lv~lL 463 (579)
|+..|....-. . ..+..+...+.. .+..|.......|.+++ .+| ..+.+.......++++
T Consensus 534 A~~~Lm~t~P~--------~--~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P-~~~~la~~~~~a~~~l 596 (1056)
T 1lsh_A 534 SCIVFFESKPS--------V--ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP-EFRDVAAACSVAIKML 596 (1056)
T ss_dssp HHHHHHHTCCC--------H--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG-GGHHHHHHHHHHHTTS
T ss_pred HHHHHHHHCcC--------H--HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHh
Confidence 88888754322 1 456666777765 57788888889999999 333 3344444444445555
No 115
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=92.56 E-value=7.5 Score=44.92 Aligned_cols=167 Identities=10% Similarity=0.012 Sum_probs=106.8
Q ss_pred cHHHHHHHhcC----CCHHHHHHHHHHHHHhhc----ChhhHHHHHHcCCHHHH----HHHhcCCCHHHHHHHHHHHHHH
Q 047123 289 GVSVLIEAFRS----GTALTQSHAVGAIRNIAA----VEDIKAALAEEGAVPVL----VQSLTSSSNLAQENAADCIATL 356 (579)
Q Consensus 289 ~i~~Lv~ll~~----~~~~~~~~a~~aL~nLs~----~~~~~~~l~~~g~v~~L----v~lL~~~~~~v~~~a~~~L~~L 356 (579)
.+..+..++.+ .++.++..+..++.+|.. +...+ ....++.+ .+.+..++..-+..++.+|+|+
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 34667777765 355677777777766632 21110 11123333 3444667777888899999998
Q ss_pred hcCChhhHHHHHhcCcHHHHHHhhccC-----CCChHHHHHHHHHHHHcccc-hhHHHHHhhcCcHHHHHHHHH--hcCC
Q 047123 357 AASGEYFRLLIIQERGLQRLMHLIQDS-----TSSIVTVENALLAISSLSLS-DSAARILSSTTSFIIQLGEFI--KRGN 428 (579)
Q Consensus 357 a~~~~~~r~~l~~~g~i~~Lv~ll~~~-----~~~~~~~~~A~~aL~~L~~~-~~~~~l~~~~~g~i~~L~~lL--~~~~ 428 (579)
.. ...++.|..++... +....++..|+.+|++++.. +. -+-+.++.+. ...+
T Consensus 468 g~-----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~---------~v~~il~~i~~n~~e~ 527 (1056)
T 1lsh_A 468 GQ-----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR---------KVQEIVLPIFLNVAIK 527 (1056)
T ss_dssp TC-----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH---------HHHHHHHHHHHCTTSC
T ss_pred CC-----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH---------HHHHHHHHHhcCCCCC
Confidence 65 23477777776531 22236778899999988754 11 2344566676 4568
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCC
Q 047123 429 VLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVR 486 (579)
Q Consensus 429 ~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~ 486 (579)
+++|..|...|..-.-+... +..+...+...++..|.-.....|.+++...
T Consensus 528 ~EvRiaA~~~Lm~t~P~~~~-------l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 528 SELRIRSCIVFFESKPSVAL-------VSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHHHHTCCCHHH-------HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHCcCHHH-------HHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 89999998888754422111 5566666656678899999999999998764
No 116
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=92.17 E-value=7.4 Score=36.17 Aligned_cols=165 Identities=17% Similarity=0.189 Sum_probs=100.7
Q ss_pred HHHHHHHHHhccC-hhhHHHHHhhCcHHHHHHhhcc---CC-------CHHHHHHHHHHHHHhhccChhhHHHHHh-cCC
Q 047123 181 KALESLLQLLKDD-DKSAAVVAKEGNVGYLISLLDF---HH-------QSSIREQAVLALSIIVSANDESRKIVFE-EGG 248 (579)
Q Consensus 181 ~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~LL~~---~~-------~~~~~~~A~~aL~~La~~~~~~~~~i~~-~g~ 248 (579)
+-+..|.-..+.+ ....+.+ ..+|+..|+.+|.. .+ +...+..++.||..+.. +......+.. .++
T Consensus 20 ~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~ 97 (233)
T 2f31_A 20 SCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEG 97 (233)
T ss_dssp HHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSH
T ss_pred HHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHH
Confidence 3445554444433 3445555 46788888887751 11 35667789999999988 7766666654 568
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCc--c-HHHHH----------hcCcHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 047123 249 LGPLLRILETGSMPLKEKAAIGVEAITTDPE--N-AWAIS----------AYGGVSVLIEAFRS-GTALTQSHAVGAIRN 314 (579)
Q Consensus 249 l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~--~-~~~i~----------~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~n 314 (579)
+..++..|.+.++.++..+...|..++..++ . ...+. +..-...+++.+.+ .+.+.+..+...+-.
T Consensus 98 i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~ 177 (233)
T 2f31_A 98 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINA 177 (233)
T ss_dssp HHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999886443 3 33222 12244557776664 344555554444444
Q ss_pred hhcChh-------hHHHHHHcCCHHHHHHHhcCCCHHHHH
Q 047123 315 IAAVED-------IKAALAEEGAVPVLVQSLTSSSNLAQE 347 (579)
Q Consensus 315 Ls~~~~-------~~~~l~~~g~v~~Lv~lL~~~~~~v~~ 347 (579)
+...++ .|..+...|..+.+-.+=..+++++..
T Consensus 178 li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 178 LITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKV 217 (233)
T ss_dssp HHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHH
Confidence 433322 244555666655554443444554433
No 117
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=91.79 E-value=2.6 Score=40.63 Aligned_cols=145 Identities=12% Similarity=0.162 Sum_probs=97.7
Q ss_pred HHHHHHHhccC------CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhh--ccCCCHHHHHHHHHHHHHhhcc
Q 047123 164 IRDIFTRLQIG------GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLL--DFHHQSSIREQAVLALSIIVSA 235 (579)
Q Consensus 164 v~~Lv~~L~~~------~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL--~~~~~~~~~~~A~~aL~~La~~ 235 (579)
......++++| +.+....|+..|.+++- +.++.-.|++.+ ...|-.++ . ...+.+++.|+++|+.--++
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSH-Di~~G~KI~~~e-f~lL~nL~~~~-~~~~~~rE~aarII~ssLRN 100 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAH-DYKHGYKIITHE-FALLANLSLNE-NLPLTLRELSTRVITSCLRN 100 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTT-SHHHHHHHHHHH-HHHHHHHHHCT-TSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhh-hHHhhhHHHhCc-HHHHHHHHhhc-cCChhHHHHHHHHHHHHHcc
Confidence 34555566666 45566789999999985 455555555432 34444433 3 55678999999999988777
Q ss_pred ChhhHHHHHhc--CCHHHHHHHHcc-------CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCC--CHHH
Q 047123 236 NDESRKIVFEE--GGLGPLLRILET-------GSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSG--TALT 304 (579)
Q Consensus 236 ~~~~~~~i~~~--g~l~~Lv~lL~~-------~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~~ 304 (579)
||...+.+... ..+..++.-|.. ....++..-..+|..|..++. .| ...++..|.+++... ++.+
T Consensus 101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~ 176 (315)
T 3qml_C 101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQL 176 (315)
T ss_dssp CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHH
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHH
Confidence 88888777653 455555555543 245677778888999997752 22 245668888887776 8888
Q ss_pred HHHHHHHHHHh
Q 047123 305 QSHAVGAIRNI 315 (579)
Q Consensus 305 ~~~a~~aL~nL 315 (579)
+..++..+..+
T Consensus 177 k~Kvl~li~d~ 187 (315)
T 3qml_C 177 QIKVLELISKI 187 (315)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888777554
No 118
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=91.52 E-value=8.2 Score=35.80 Aligned_cols=139 Identities=12% Similarity=0.086 Sum_probs=94.2
Q ss_pred HHHH-HhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHH-hhccCCCHHHHHHHHHHHHHhhc-cChhhHHH
Q 047123 166 DIFT-RLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLIS-LLDFHHQSSIREQAVLALSIIVS-ANDESRKI 242 (579)
Q Consensus 166 ~Lv~-~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~-LL~~~~~~~~~~~A~~aL~~La~-~~~~~~~~ 242 (579)
.+.. +.++...++|..|+..|+.+ ... ...++.+.. +-. +.+-.||+.++.++..++. .+++
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~-D~~WrVre~lA~a~~~~~~~~~pe---- 138 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSK-DNNWRVQEVLAKAFDEFCKKIEYK---- 138 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGG-CSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCC-CCCccHHHHHHHHHHHHHHhcCHH----
Confidence 4444 44566788999999988777 322 224666666 555 7789999999999998874 2443
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh-cCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-Chh
Q 047123 243 VFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISA-YGGVSVLIEAFRSGTALTQSHAVGAIRNIAA-VED 320 (579)
Q Consensus 243 i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~-~~~ 320 (579)
..++.+.....++++.+|+.|...+.--+..+.. ... .-+++.|-.+..+++.-+|....+.|+.++. +|+
T Consensus 139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~---k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF---KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT---TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh---hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence 2578889999999999999998876532211100 000 1134555556667888999999999999998 555
Q ss_pred hHHHHH
Q 047123 321 IKAALA 326 (579)
Q Consensus 321 ~~~~l~ 326 (579)
-...++
T Consensus 212 ~V~~~~ 217 (240)
T 3l9t_A 212 LVKIEL 217 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 119
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=91.41 E-value=9 Score=38.58 Aligned_cols=147 Identities=16% Similarity=0.102 Sum_probs=101.5
Q ss_pred HHHHHhhcCcHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhcCChhhHHHHHHH---HHHHHHhccCCCCHhH
Q 047123 406 AARILSSTTSFIIQLGEFIKR-----------GNVLLQQVSSSLLGNLSISDGNKRAVASC---MGSLIKLMECPKPVGL 471 (579)
Q Consensus 406 ~~~l~~~~~g~i~~L~~lL~~-----------~~~~v~~~A~~aL~~L~~~~~~~~~i~~~---v~~Lv~lL~~~~~~~v 471 (579)
+..+. . +++..|+.+|.. .+...+..+..+|..+..+......+... +..|...+ .+.+..+
T Consensus 103 V~~F~-~--~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L-~s~~~~~ 178 (383)
T 3eg5_B 103 VQTFG-A--EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPNM 178 (383)
T ss_dssp HHHHH-H--HHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTC-CTTSHHH
T ss_pred HHHHH-H--ccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHh-CCCchHH
Confidence 44554 4 677888888741 23477888899999998777777766665 99999999 8889999
Q ss_pred HHHHHHHHHHhhcCCc--c-hhHHH---------hhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCC-Ch----hHH
Q 047123 472 QEAATDAVLSLLTVRS--N-RKELV---------RDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGG-SN----GCR 534 (579)
Q Consensus 472 ~~~a~~aL~~L~~~~~--~-~~~~~---------~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~-~~----~~r 534 (579)
+..+.+.|..++..+. + ...++ .+..-...+++.|+.......+.+.+..+..+..+. +. ..|
T Consensus 179 ~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR 258 (383)
T 3eg5_B 179 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIR 258 (383)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999887654 2 33222 223346778888886432224555556566666554 22 356
Q ss_pred HHHHHcCchHHHHhhhccCCch
Q 047123 535 KRLVAAGAYQHLQKLAETEVPG 556 (579)
Q Consensus 535 ~~i~~~g~~~~L~~L~~~~~~~ 556 (579)
..+...|..+.+.+|-..++++
T Consensus 259 ~ef~~~Gl~~il~~lr~~~~~~ 280 (383)
T 3eg5_B 259 SELMRLGLHQVLQELREIENED 280 (383)
T ss_dssp HHHHHTTHHHHHHHHTTSCCHH
T ss_pred HHHHHCChHHHHHHHhcCCChh
Confidence 7777899999998876665554
No 120
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=91.40 E-value=6.8 Score=36.45 Aligned_cols=147 Identities=17% Similarity=0.118 Sum_probs=100.5
Q ss_pred cHHHHHHHHHhc----C-------CHHHHHHHHHHHHHhcCChhhHHHHHHH---HHHHHHhccCCCCHhHHHHHHHHHH
Q 047123 415 SFIIQLGEFIKR----G-------NVLLQQVSSSLLGNLSISDGNKRAVASC---MGSLIKLMECPKPVGLQEAATDAVL 480 (579)
Q Consensus 415 g~i~~L~~lL~~----~-------~~~v~~~A~~aL~~L~~~~~~~~~i~~~---v~~Lv~lL~~~~~~~v~~~a~~aL~ 480 (579)
+++..|+.+|.. + +...+..+..+|..+..+......+... +..|...+ ++++..++..+.+.|.
T Consensus 43 ~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~~~~r~~~leLL~ 121 (233)
T 2f31_A 43 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPNMMIDAAKLLS 121 (233)
T ss_dssp HHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTC-CTTSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHh-CCCCchHHHHHHHHHH
Confidence 667777777642 1 3466788889999998777767766665 89999999 8889999999999999
Q ss_pred HhhcCCc--c-hhHHH---------hhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC-----hhHHHHHHHcCch
Q 047123 481 SLLTVRS--N-RKELV---------RDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS-----NGCRKRLVAAGAY 543 (579)
Q Consensus 481 ~L~~~~~--~-~~~~~---------~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~-----~~~r~~i~~~g~~ 543 (579)
.++..+. . ...+. .+..-...+++.+...+....+.+.+..+..+..+.+ ...|..+...|..
T Consensus 122 ~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~ 201 (233)
T 2f31_A 122 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 201 (233)
T ss_dssp HHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 8887654 3 33222 2223456688888754322245555555666666553 2357778899999
Q ss_pred HHHHhhhccCCchHHHHHH
Q 047123 544 QHLQKLAETEVPGAKKVLQ 562 (579)
Q Consensus 544 ~~L~~L~~~~~~~ak~~~~ 562 (579)
+.+.+|-..++++...=++
T Consensus 202 ~il~~l~~~~~~~L~~Qi~ 220 (233)
T 2f31_A 202 QVLQELREIENEDMKVQLC 220 (233)
T ss_dssp HHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHH
Confidence 9999998777766554443
No 121
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=90.34 E-value=30 Score=39.83 Aligned_cols=298 Identities=12% Similarity=0.100 Sum_probs=148.6
Q ss_pred cCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHH-HhhccCCCHHHHHHHHHHHHHhhcc-ChhhHHHHHh--cCC
Q 047123 173 IGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLI-SLLDFHHQSSIREQAVLALSIIVSA-NDESRKIVFE--EGG 248 (579)
Q Consensus 173 ~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv-~LL~~~~~~~~~~~A~~aL~~La~~-~~~~~~~i~~--~g~ 248 (579)
.++++....++.+|..+.+=- ....+.+.+.++.|+ .+|. ++..+..|+.+|..+... .+++...+.. .++
T Consensus 218 ~~~~~lv~~~L~~L~~~~sWI--~i~~i~~~~ll~~L~~~~L~---~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~ 292 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLNWI--PLGYIFETKLISTLIYKFLN---VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLT 292 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTTTS--CTHHHHSSSHHHHHHHHTSS---SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhc--CHHHhccchHHHHHHHHhcC---ChHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 457777778888888886532 245677888888884 6665 678999999999998762 2233333321 122
Q ss_pred HHHHHHHHcc----------C---CHHHHHHHHHHHHHhcCCCccHHHHHhc--------CcHHHHHHHhcCCCHHHHHH
Q 047123 249 LGPLLRILET----------G---SMPLKEKAAIGVEAITTDPENAWAISAY--------GGVSVLIEAFRSGTALTQSH 307 (579)
Q Consensus 249 l~~Lv~lL~~----------~---~~~v~~~aa~~L~~Ls~~~~~~~~i~~~--------g~i~~Lv~ll~~~~~~~~~~ 307 (579)
+..+-.++.. + +.+.-..-++.+..+.... ...+... .++..|+.+...++.++.+.
T Consensus 293 ~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~--~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~ki 370 (1073)
T 3gjx_A 293 MMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEH--GQLLEKRLNLREALMEALHYMLLVSEVEETEIFKI 370 (1073)
T ss_dssp HHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHH--HHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHH--HHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 2222222211 1 2344444555555444211 1112111 13344555555667666655
Q ss_pred HHHHHHHhhc-----Ch-----------------hhHHHHHH---cCCHHHHHHHhcCC--------------------C
Q 047123 308 AVGAIRNIAA-----VE-----------------DIKAALAE---EGAVPVLVQSLTSS--------------------S 342 (579)
Q Consensus 308 a~~aL~nLs~-----~~-----------------~~~~~l~~---~g~v~~Lv~lL~~~--------------------~ 342 (579)
+...=..+.. .+ ..+..+.. ...+..++.-+..+ .
T Consensus 371 tf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~ 450 (1073)
T 3gjx_A 371 CLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDT 450 (1073)
T ss_dssp HHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSC
T ss_pred HHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhc
Confidence 5543222221 00 01111110 11122222222211 1
Q ss_pred HH--HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hh-HHHHHhhcCcHH
Q 047123 343 NL--AQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DS-AARILSSTTSFI 417 (579)
Q Consensus 343 ~~--v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~-~~~l~~~~~g~i 417 (579)
.. +....-.+|..++.-+...... -..+.+-+.+.....+-...+.++++++.++.. +. -+.++.. ++
T Consensus 451 ~~~~ly~~mrd~L~~lt~l~~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~---vi 523 (1073)
T 3gjx_A 451 DSINLYKNMRETLVYLTHLDYVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVT---VI 523 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH---HH
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHH---HH
Confidence 11 1122223333333211110000 012233333333333347889999999999866 22 3344443 77
Q ss_pred HHHHHHHhcCC-HH----HHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123 418 IQLGEFIKRGN-VL----LQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECPKPVGLQEAATDAVLSLLTV 485 (579)
Q Consensus 418 ~~L~~lL~~~~-~~----v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~ 485 (579)
+.|+.+.+... .+ ++.....+++..+..-.....+.+. +..|++.+ ...+..++++|+.++..++..
T Consensus 524 ~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m-~~~~~~vq~aA~~af~~i~~~ 596 (1073)
T 3gjx_A 524 KDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFM-HETHDGVQDMACDTFIKIAQK 596 (1073)
T ss_dssp HHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHT-TCCSTTHHHHHHHHHHHHHHH
T ss_pred HHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHH
Confidence 77877776542 12 2222234555544211122334444 88888888 677889999999999999853
No 122
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=89.89 E-value=8.7 Score=38.72 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=96.3
Q ss_pred HHHhcCcHHHHHHHhcC-----------CCHHHHHHHHHHHHHhhcChhhHHHHH-HcCCHHHHHHHhcCCCHHHHHHHH
Q 047123 283 AISAYGGVSVLIEAFRS-----------GTALTQSHAVGAIRNIAAVEDIKAALA-EEGAVPVLVQSLTSSSNLAQENAA 350 (579)
Q Consensus 283 ~i~~~g~i~~Lv~ll~~-----------~~~~~~~~a~~aL~nLs~~~~~~~~l~-~~g~v~~Lv~lL~~~~~~v~~~a~ 350 (579)
.|. .+|+..|+.++.. .+...+..++.||+.+..+......+. ....+..++..+.+..+.++..++
T Consensus 105 ~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~al 183 (383)
T 3eg5_B 105 TFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAA 183 (383)
T ss_dssp HHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHH
T ss_pred HHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHH
Confidence 444 5677888887751 244778889999999988777666665 566889999999999999999999
Q ss_pred HHHHHHhcCCh-hh-HHHH----------HhcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--------hhHHHHH
Q 047123 351 DCIATLAASGE-YF-RLLI----------IQERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--------DSAARIL 410 (579)
Q Consensus 351 ~~L~~La~~~~-~~-r~~l----------~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--------~~~~~l~ 410 (579)
..|..+|..+. .. ...+ .+..-...++..++.... .+.+..+...|..+... ..+..+.
T Consensus 184 eLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~-~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~ 262 (383)
T 3eg5_B 184 KLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTS-IALKVGCLQLINALITPAEELDFRVHIRSELM 262 (383)
T ss_dssp HHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCc-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999997553 21 2222 223345777887776432 46666666666666664 2344555
Q ss_pred hhcCcHHHHHHHHHhc-CCHHHH
Q 047123 411 SSTTSFIIQLGEFIKR-GNVLLQ 432 (579)
Q Consensus 411 ~~~~g~i~~L~~lL~~-~~~~v~ 432 (579)
.. |..+.+-. ++. .++++.
T Consensus 263 ~~--Gl~~il~~-lr~~~~~~L~ 282 (383)
T 3eg5_B 263 RL--GLHQVLQE-LREIENEDMK 282 (383)
T ss_dssp HT--THHHHHHH-HTTSCCHHHH
T ss_pred HC--ChHHHHHH-HhcCCChhHH
Confidence 66 55555544 443 344433
No 123
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=88.97 E-value=0.24 Score=46.86 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=30.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHH
Q 047123 166 DIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVL 227 (579)
Q Consensus 166 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~ 227 (579)
.+..+++..++++|..++..+ . .+.|..+++ ++++.+|..++.
T Consensus 102 ~L~~ll~D~d~~VR~~aA~~l------~------------~~~L~~L~~-D~d~~VR~~aA~ 144 (244)
T 1lrv_A 102 QLSALMFDEDREVRITVADRL------P------------LEQLEQMAA-DRDYLVRAYVVQ 144 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHHS------C------------TGGGGGGTT-CSSHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhC------C------------HHHHHHHHc-CCCHHHHHHHHH
Confidence 456667788899988887753 1 123556677 888888888776
No 124
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=88.37 E-value=9.1 Score=37.51 Aligned_cols=158 Identities=8% Similarity=0.075 Sum_probs=109.1
Q ss_pred HHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHh-cCCCHHH
Q 047123 267 AAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSL-TSSSNLA 345 (579)
Q Consensus 267 aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL-~~~~~~v 345 (579)
+-..|.-|-.+...-.-++...|+..+...++..+.++....+..|...+........- -...+|.++..+ ..+++++
T Consensus 263 ~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~-L~e~LPFi~~~i~~h~eDdv 341 (619)
T 3c2g_A 263 TFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP-LENILPFLLRLIEIHPDDEV 341 (619)
T ss_dssp HHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC-CTTHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc-ccccchHHHHHhccCCCcce
Confidence 33344444466677788999999999999999999999999999998877643321110 123567777776 4678899
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCC-----ChHHHHHHHHHHHHccc------------------
Q 047123 346 QENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTS-----SIVTVENALLAISSLSL------------------ 402 (579)
Q Consensus 346 ~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~-----~~~~~~~A~~aL~~L~~------------------ 402 (579)
.....+.|.|...+....++..+..|++..|...+....+ ...-+..||+.+.|.-.
T Consensus 342 vYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~ 421 (619)
T 3c2g_A 342 IYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETK 421 (619)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCC
T ss_pred EEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccc
Confidence 9999999999998888889999999999988887644331 12334455555544322
Q ss_pred --c----hhHHHHHhhcCcHHHHHHHHHhcC
Q 047123 403 --S----DSAARILSSTTSFIIQLGEFIKRG 427 (579)
Q Consensus 403 --~----~~~~~l~~~~~g~i~~L~~lL~~~ 427 (579)
+ ..+.++++. .++.+|...|+..
T Consensus 422 ~~G~~EqQQVckFIE~--d~LKrLMtCLS~e 450 (619)
T 3c2g_A 422 TAGPNEKQQVCKFIEI--DILKKLMSCLSCE 450 (619)
T ss_dssp CCCHHHHHHHHGGGSH--HHHHHHHHHHHCC
T ss_pred cCChHHHHHHHHHHHH--HHHHHHHHHhccc
Confidence 1 123345565 6777777777654
No 125
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=88.35 E-value=8.2 Score=35.79 Aligned_cols=135 Identities=10% Similarity=0.013 Sum_probs=92.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHH-hhccCCCChHHHHHHHHHHHHccc-c-hhHHH
Q 047123 332 PVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMH-LIQDSTSSIVTVENALLAISSLSL-S-DSAAR 408 (579)
Q Consensus 332 ~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~-ll~~~~~~~~~~~~A~~aL~~L~~-~-~~~~~ 408 (579)
+....+..+....+|..|+..|..+ ... ...++.+.. +..+.+- .+++.++.++..++. . ..
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~W--rVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNW--RVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCH--HHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHhcCHH---
Confidence 3334455777789999999988877 322 223555555 4444555 899999999998885 2 21
Q ss_pred HHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcCCcc
Q 047123 409 ILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGNKRAVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTVRSN 488 (579)
Q Consensus 409 l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~~~ 488 (579)
..++.+.....+.+..++..|...+.--+..+..+......++.|-.+. .+++.-||...+.+|..++..++.
T Consensus 139 ------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~-~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 139 ------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLK-EDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp ------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTT-TCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred ------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHhhhCHH
Confidence 2567788899999999999998886543311211111111155555566 788999999999999999988765
No 126
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=88.31 E-value=20 Score=35.98 Aligned_cols=165 Identities=16% Similarity=0.186 Sum_probs=100.8
Q ss_pred HHHHHHHHhccC-hhhHHHHHhhCcHHHHHHhhcc---CC-------CHHHHHHHHHHHHHhhccChhhHHHHH-hcCCH
Q 047123 182 ALESLLQLLKDD-DKSAAVVAKEGNVGYLISLLDF---HH-------QSSIREQAVLALSIIVSANDESRKIVF-EEGGL 249 (579)
Q Consensus 182 Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~LL~~---~~-------~~~~~~~A~~aL~~La~~~~~~~~~i~-~~g~l 249 (579)
.+..|.-..+.+ ...+..+. .+|+..|+..|.. .+ +...+..++.||..+.. +......+. ..+++
T Consensus 25 ~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i 102 (386)
T 2bnx_A 25 CLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGI 102 (386)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHH
T ss_pred HHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHH
Confidence 445554444433 34455554 5778888887741 11 35677889999999988 666665555 45789
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCCc--c-HHHHH----------hcCcHHHHHHHhcC-CCHHHHHHHHHHHHHh
Q 047123 250 GPLLRILETGSMPLKEKAAIGVEAITTDPE--N-AWAIS----------AYGGVSVLIEAFRS-GTALTQSHAVGAIRNI 315 (579)
Q Consensus 250 ~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~--~-~~~i~----------~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nL 315 (579)
..++..|.+.++.++..+...|..+|..++ . ...+. +..-...+++.+.+ .+.+.+..+...+-.+
T Consensus 103 ~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~l 182 (386)
T 2bnx_A 103 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 182 (386)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 999999999999999999999998886443 2 22221 22244567777764 4445555544444444
Q ss_pred hcChh-------hHHHHHHcCCHHHHHHHhcCCCHHHHHH
Q 047123 316 AAVED-------IKAALAEEGAVPVLVQSLTSSSNLAQEN 348 (579)
Q Consensus 316 s~~~~-------~~~~l~~~g~v~~Lv~lL~~~~~~v~~~ 348 (579)
...++ .|..+...|..+.+-.+=..+++.+...
T Consensus 183 v~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 183 ITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 43322 2555666676666544434455554443
No 127
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=86.84 E-value=18 Score=36.42 Aligned_cols=143 Identities=17% Similarity=0.118 Sum_probs=97.8
Q ss_pred cHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhcCChhhHHHHHHH---HHHHHHhccCCCCHhHHHHHHHHHH
Q 047123 415 SFIIQLGEFIKR-----------GNVLLQQVSSSLLGNLSISDGNKRAVASC---MGSLIKLMECPKPVGLQEAATDAVL 480 (579)
Q Consensus 415 g~i~~L~~lL~~-----------~~~~v~~~A~~aL~~L~~~~~~~~~i~~~---v~~Lv~lL~~~~~~~v~~~a~~aL~ 480 (579)
+++..|+.+|.. .+...+..+..+|..+..+......+... +..|...+ ++++..++..+.+.|.
T Consensus 47 ~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL-~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 47 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTC-CTTSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHh-CCCCchHHHHHHHHHH
Confidence 567777777631 13467788889999998777666666665 89999999 8888999999999998
Q ss_pred HhhcCCc--c-hhHHH---------hhcccHHHHHhhcCCCchhhhhHHHHHHHHHHhCCCC-----hhHHHHHHHcCch
Q 047123 481 SLLTVRS--N-RKELV---------RDEKSVMRLMQMLDPKNEALNKKFPVMVTAAVLGGGS-----NGCRKRLVAAGAY 543 (579)
Q Consensus 481 ~L~~~~~--~-~~~~~---------~~~~~i~~Lv~lL~~~~~~~~k~~av~~L~~L~~~~~-----~~~r~~i~~~g~~ 543 (579)
.++..+. . ...++ .+..-...+|+.+........+.+.+..+..+..+.. ...|..+...|..
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~ 205 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 205 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 8887654 3 22221 1223445688888754432245555565666665553 2367888899999
Q ss_pred HHHHhhhccCCchHH
Q 047123 544 QHLQKLAETEVPGAK 558 (579)
Q Consensus 544 ~~L~~L~~~~~~~ak 558 (579)
+.+.+|-..+++...
T Consensus 206 ~il~~Lr~~~~~~L~ 220 (386)
T 2bnx_A 206 QVLQELREIENEDMK 220 (386)
T ss_dssp HHHHHHTTCCCHHHH
T ss_pred HHHHHHhccCChhHH
Confidence 999988777766543
No 128
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=84.18 E-value=71 Score=37.37 Aligned_cols=296 Identities=9% Similarity=-0.035 Sum_probs=160.8
Q ss_pred HHHHHHHHhccC--CHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHH-hhccCCCHHHHHHHHHHHHHhhcc----
Q 047123 163 FIRDIFTRLQIG--GVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLIS-LLDFHHQSSIREQAVLALSIIVSA---- 235 (579)
Q Consensus 163 ~v~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~-LL~~~~~~~~~~~A~~aL~~La~~---- 235 (579)
.+..++..+.++ +.+.|.+|-..|..+-... ++...+.. +...+.++.+|..|+..|.+....
T Consensus 12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~ 81 (1204)
T 3a6p_A 12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG 81 (1204)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc
Confidence 344444444443 6777888888887764321 23444444 332266789999999999877541
Q ss_pred -ChhhHHHHHhcCCHHHHHHHHc---cCCHHHHHHHHHHHHHhcCCC-ccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Q 047123 236 -NDESRKIVFEEGGLGPLLRILE---TGSMPLKEKAAIGVEAITTDP-ENAWAISAYGGVSVLIEAFRSGTALTQSHAVG 310 (579)
Q Consensus 236 -~~~~~~~i~~~g~l~~Lv~lL~---~~~~~v~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~ 310 (579)
.++.+..+ +...+..+...-. ..+..++...+.++..++... ... -.+.++.|+.++++ ++...+.+..
T Consensus 82 l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~----Wp~ll~~L~~~~~~-~~~~~e~~L~ 155 (1204)
T 3a6p_A 82 MSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH----WPDMLIELDTLSKQ-GETQTELVMF 155 (1204)
T ss_dssp SCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT----CTTHHHHHHHHHHT-CHHHHHHHHH
T ss_pred CCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc----chHHHHHHHHHhcC-CHHHHHHHHH
Confidence 23333333 3333333333211 136789999999999988421 111 24678888888876 4556777888
Q ss_pred HHHHhhcC-------hhhH-----HHHHHcCCHHHHHHH----hcC-------------------CCHHHHHHHHHHHHH
Q 047123 311 AIRNIAAV-------EDIK-----AALAEEGAVPVLVQS----LTS-------------------SSNLAQENAADCIAT 355 (579)
Q Consensus 311 aL~nLs~~-------~~~~-----~~l~~~g~v~~Lv~l----L~~-------------------~~~~v~~~a~~~L~~ 355 (579)
+|..++.. ...| ..+.+. ++.++.+ +.. ++..+...++.++.+
T Consensus 156 iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~--~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 156 ILLRLAEDVVTFQTLPPQRRRDIQQTLTQN--MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHTSCCSCHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 88777531 1111 122221 3333333 321 123466667777766
Q ss_pred HhcCChhhHHHHHhc--CcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--h--hHHHHHhh-cCcHHHHHHHHHh---
Q 047123 356 LAASGEYFRLLIIQE--RGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--D--SAARILSS-TTSFIIQLGEFIK--- 425 (579)
Q Consensus 356 La~~~~~~r~~l~~~--g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~--~~~~l~~~-~~g~i~~L~~lL~--- 425 (579)
....-+. ..+.+. ..++.+..++.. ++++..|+.+|..+... . ....++.. ...++..++..+.
T Consensus 234 ~l~Wi~~--~~i~~~~~~ll~~l~~~l~~----~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~ 307 (1204)
T 3a6p_A 234 YIDWVSM--SHITAENCKLLEILCLLLNE----QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTAD 307 (1204)
T ss_dssp TTTTSCH--HHHHTTTSHHHHHHHHGGGC----TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCC
T ss_pred HHhccCH--HHHHhccchHHHHHHHHcCC----HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCC
Confidence 5443221 223332 256666666553 36899999999999975 1 11112221 0022445555542
Q ss_pred -----cCCHHHHHHHHHHHHHhcCChhhHH------------HHHHHHHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123 426 -----RGNVLLQQVSSSLLGNLSISDGNKR------------AVASCMGSLIKLMECPKPVGLQEAATDAVLSLLTV 485 (579)
Q Consensus 426 -----~~~~~v~~~A~~aL~~L~~~~~~~~------------~i~~~v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~ 485 (579)
..+.+..+.-+.++..++. .... .+.+-++.++++. ...+..+-..++..-..+...
T Consensus 308 ~~~~~e~d~e~~k~l~~ll~~lg~--~l~~l~~~~~~~~~~~~l~~~l~~lL~~t-~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 308 GGGLVEKHYVFLKRLCQVLCALGN--QLCALLGADSDVETPSNFGKYLESFLAFT-THPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHH--HHHHHHHTCSSCCCCTTHHHHHHHHHHHH-TSSCHHHHHHHHHHHHHHHSC
T ss_pred CCCCccHHHHHHHHHHHHHHHHHH--HHHHHHhccccccChhHHHHHHHHHHHHH-hCccHHhHHHHHHHHHHHHhc
Confidence 1124555566666666651 1111 1122277888888 445777777777755556654
No 129
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=81.61 E-value=4.7 Score=35.23 Aligned_cols=74 Identities=9% Similarity=-0.005 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc
Q 047123 161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKD-DDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVS 234 (579)
Q Consensus 161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~ 234 (579)
...++.+..+|+++++.++..|+..|-.+.+. .+.....|....++..|++++....++.+++.++..|..-+.
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999988888775 455666777889999999999823678999999988887665
No 130
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=79.62 E-value=7.4 Score=33.38 Aligned_cols=73 Identities=16% Similarity=0.040 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhhCcHHHHHHhhccC------CCHHHHHHHHHHHHHhh
Q 047123 161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKD-DDKSAAVVAKEGNVGYLISLLDFH------HQSSIREQAVLALSIIV 233 (579)
Q Consensus 161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~LL~~~------~~~~~~~~A~~aL~~La 233 (579)
...++.+..+|+++++.++..|+..|-.+.+. ++.....+....++..|++++. . .++.+++.++..+..-+
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~-~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLS-PKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTC-CSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHc-cccCCCCCCHHHHHHHHHHHHHHH
Confidence 34688899999999999999999998888775 4566778888999999999986 3 36899999999888777
Q ss_pred c
Q 047123 234 S 234 (579)
Q Consensus 234 ~ 234 (579)
.
T Consensus 116 ~ 116 (148)
T 1mhq_A 116 V 116 (148)
T ss_dssp H
T ss_pred H
Confidence 5
No 131
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=79.45 E-value=1e+02 Score=36.02 Aligned_cols=210 Identities=11% Similarity=-0.047 Sum_probs=115.1
Q ss_pred CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc--cCCHHHHHHHHHHHHHhcC------CCccHHHHHhcC
Q 047123 217 HQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLRILE--TGSMPLKEKAAIGVEAITT------DPENAWAISAYG 288 (579)
Q Consensus 217 ~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~--~~~~~v~~~aa~~L~~Ls~------~~~~~~~i~~~g 288 (579)
.+...|..|-..|..+-. ++ .+...+...|. +.+..+|..|+.+|.+... .++.+..| +..
T Consensus 25 ~~~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r~~ 93 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-KNS 93 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-HHH
T ss_pred CChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-HHH
Confidence 367788888888887765 33 23444444443 3478899999999998752 12222222 223
Q ss_pred cHHHHHHHhcC---CCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---C--
Q 047123 289 GVSVLIEAFRS---GTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTSSSNLAQENAADCIATLAAS---G-- 360 (579)
Q Consensus 289 ~i~~Lv~ll~~---~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~La~~---~-- 360 (579)
.+..+...... .+..++...+.++..++..+--. .-.+.++.+++++++ ++..++.++.+|..++.. .
T Consensus 94 ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~---~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~ 169 (1204)
T 3a6p_A 94 VMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ---HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQT 169 (1204)
T ss_dssp HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT---TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccc
Confidence 33333322111 35678888888888876532110 023467778888866 556678888888888642 0
Q ss_pred -hhhHH-----HHHhc--CcHHHHHHhhccC-----------------CCChHHHHHHHHHHHHcccchhHHHHHhhcCc
Q 047123 361 -EYFRL-----LIIQE--RGLQRLMHLIQDS-----------------TSSIVTVENALLAISSLSLSDSAARILSSTTS 415 (579)
Q Consensus 361 -~~~r~-----~l~~~--g~i~~Lv~ll~~~-----------------~~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g 415 (579)
...|. .+.+. ..++.+.+++... ..+..+...+..++.+...-.....+.+....
T Consensus 170 ~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ 249 (1204)
T 3a6p_A 170 LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCK 249 (1204)
T ss_dssp SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccch
Confidence 01111 12211 1222333333321 00123455566666655443233333333112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 047123 416 FIIQLGEFIKRGNVLLQQVSSSLLGNLS 443 (579)
Q Consensus 416 ~i~~L~~lL~~~~~~v~~~A~~aL~~L~ 443 (579)
.+..+..++. +++++..|+.+|..+.
T Consensus 250 ll~~l~~~l~--~~~lr~~A~ecL~~i~ 275 (1204)
T 3a6p_A 250 LLEILCLLLN--EQELQLGAAECLLIAV 275 (1204)
T ss_dssp HHHHHHHGGG--CTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHHH
Confidence 6666665554 5678899999999998
No 132
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=78.98 E-value=7.5 Score=32.95 Aligned_cols=73 Identities=12% Similarity=0.055 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhccC-hhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc
Q 047123 161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKDD-DKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVS 234 (579)
Q Consensus 161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~ 234 (579)
...++.+..+|+++++.++..|+..|-.+.+.. +.....+....++..|+++++ ..++.+++..+..+..-+.
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~-~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLN-KGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHH
Confidence 346888999999999999999998887776643 445556778889999999998 7889999999998887664
No 133
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=75.99 E-value=1.2e+02 Score=34.93 Aligned_cols=217 Identities=11% Similarity=0.093 Sum_probs=136.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhcc----Chh
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSA----NDE 238 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~----~~~ 238 (579)
.+..++..+.+++.+.|.+|-..|..+-. ++ ++...+..+|..+.++.+|--|+..|.+.... -+.
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~ 98 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPR 98 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHc-Cc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence 56777888888888888888888876643 32 44555666666355799999999999977651 122
Q ss_pred hHHHHHhcCCHHHHHHHHcc-----CCHHHHHHHHHHHHHhcC--CCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHH
Q 047123 239 SRKIVFEEGGLGPLLRILET-----GSMPLKEKAAIGVEAITT--DPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGA 311 (579)
Q Consensus 239 ~~~~i~~~g~l~~Lv~lL~~-----~~~~v~~~aa~~L~~Ls~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~a 311 (579)
....-++...+..+.+.-.. .++.++...+.++..++. .++ . -.+.++-++..++. ++......+.+
T Consensus 99 e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~-~----Wp~fi~dLv~~~~~-~~~~~~~~L~I 172 (1073)
T 3gjx_A 99 NQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK-H----WPTFISDIVGASRT-SESLCQNNMVI 172 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT-T----CTTHHHHHHHHHHH-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh-h----ccHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 22223333445555444322 246677888888888873 222 1 24567777777754 34455667777
Q ss_pred HHHhhcC--h------------hhHHHHHHcCCHHHHHHHh-----cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc
Q 047123 312 IRNIAAV--E------------DIKAALAEEGAVPVLVQSL-----TSSSNLAQENAADCIATLAASGEYFRLLIIQERG 372 (579)
Q Consensus 312 L~nLs~~--~------------~~~~~l~~~g~v~~Lv~lL-----~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~ 372 (579)
|..|+.. + ..+..+.+. ++.++.++ ...++.+...++.+|......-+- ..+.+.+.
T Consensus 173 L~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i--~~i~~~~l 248 (1073)
T 3gjx_A 173 LKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL--GYIFETKL 248 (1073)
T ss_dssp HHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSH
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH--HHhccchH
Confidence 7766531 1 112334332 45555444 356778888899999998875432 35677888
Q ss_pred HHHHH-HhhccCCCChHHHHHHHHHHHHcccc
Q 047123 373 LQRLM-HLIQDSTSSIVTVENALLAISSLSLS 403 (579)
Q Consensus 373 i~~Lv-~ll~~~~~~~~~~~~A~~aL~~L~~~ 403 (579)
++.++ .++.. +..+..|+.+|..+...
T Consensus 249 l~~L~~~~L~~----~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 249 ISTLIYKFLNV----PMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHHHHTSSS----HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCC----hHHHHHHHHHHHHHHhc
Confidence 88774 66532 47999999999998764
No 134
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=74.86 E-value=13 Score=31.80 Aligned_cols=74 Identities=16% Similarity=0.043 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhccC-hhhHHHHHhhCcHHHHHHhhcc-----CCCHHHHHHHHHHHHHhhc
Q 047123 161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKDD-DKSAAVVAKEGNVGYLISLLDF-----HHQSSIREQAVLALSIIVS 234 (579)
Q Consensus 161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~LL~~-----~~~~~~~~~A~~aL~~La~ 234 (579)
...++.+..+|+++++.++..|+..|-.+.+.. +.....|....++..|++++.. ..++.+++..+..+..-+.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 346889999999999999999999888887643 4455777788999999999861 2468999999999887775
No 135
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=73.04 E-value=11 Score=33.28 Aligned_cols=74 Identities=15% Similarity=0.055 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhccC-hhhHHHHHhhCcHHHHHHhhcc-----CCCHHHHHHHHHHHHHhhc
Q 047123 161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLKDD-DKSAAVVAKEGNVGYLISLLDF-----HHQSSIREQAVLALSIIVS 234 (579)
Q Consensus 161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~LL~~-----~~~~~~~~~A~~aL~~La~ 234 (579)
...++.+..+|+++++.++..|+..|-.+.+.. +.....|....++..|++++.. ..+..+++.++..|..-+.
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999988887763 4556677889999999999861 1358999999999987776
No 136
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=72.66 E-value=22 Score=34.28 Aligned_cols=134 Identities=16% Similarity=0.081 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHH-hcCcHHHHHHhhccCCCChHHHHHHHHHHHHcccc--hhHHHHHhhcCcHHHHH
Q 047123 344 LAQENAADCIATLAASGEYFRLLII-QERGLQRLMHLIQDSTSSIVTVENALLAISSLSLS--DSAARILSSTTSFIIQL 420 (579)
Q Consensus 344 ~v~~~a~~~L~~La~~~~~~r~~l~-~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~--~~~~~l~~~~~g~i~~L 420 (579)
...+.++..|..++.+-..+-..+- +...+..|+ +... ..+.+++.|+++|...-.+ +....+....+.++..+
T Consensus 43 ~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~--~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 43 ARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNEN--LPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTT--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhcc--CChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 4567788888888775444333333 333334443 2222 3357999999999988887 56667777777888877
Q ss_pred HHHHhc-------CCHHHHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHhccCCC--CHhHHHHHHHHHHHhhc
Q 047123 421 GEFIKR-------GNVLLQQVSSSLLGNLSISDGNKRAVASC-MGSLIKLMECPK--PVGLQEAATDAVLSLLT 484 (579)
Q Consensus 421 ~~lL~~-------~~~~v~~~A~~aL~~L~~~~~~~~~i~~~-v~~Lv~lL~~~~--~~~v~~~a~~aL~~L~~ 484 (579)
..-|.. ....++..-+.+|..|..++. .|... +..|.+++ ... +..++..+...+..+-.
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F~~~~m~~L~~ly-~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DLPIYSTVVLQNVY-ERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC--CCHHHHHHHH-HHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hhhhccHHHHHHHH-ccCCCCHHHHHHHHHHHHHHcc
Confidence 766644 344566677788888886642 12122 66777766 334 78899988888888764
No 137
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=71.32 E-value=11 Score=34.84 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=60.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc
Q 047123 162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKD-DDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVS 234 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~ 234 (579)
..++.+..+|+++++.++..|+..|-.+.+. .+.....|....++..|+++++...++.+++.++..|..-+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999988887764 344566777888999999998745678999999999887765
No 138
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=66.78 E-value=1e+02 Score=30.32 Aligned_cols=131 Identities=10% Similarity=0.124 Sum_probs=92.2
Q ss_pred HHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhc-CCC
Q 047123 223 EQAVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFR-SGT 301 (579)
Q Consensus 223 ~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~-~~~ 301 (579)
..+...|..+-. +...-+-++...|+..+..+...++.++.+..+..|...+.....+.. --...++-++..+. +++
T Consensus 261 tR~FDLL~LLmH-dSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t-~L~e~LPFi~~~i~~h~e 338 (619)
T 3c2g_A 261 IRTFDLLGLLLH-DSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT-PLENILPFLLRLIEIHPD 338 (619)
T ss_dssp HHHHHHHHHHCC-SHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS-CCTTHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhc-ccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc-cccccchHHHHHhccCCC
Confidence 345555555555 666778899999999999999999999999999998888754322110 01345676766655 678
Q ss_pred HHHHHHHHHHHHHhhcChh-hHHHHHHcCCHHHHHHHhcCC-------CHHHHHHHHHHHHH
Q 047123 302 ALTQSHAVGAIRNIAAVED-IKAALAEEGAVPVLVQSLTSS-------SNLAQENAADCIAT 355 (579)
Q Consensus 302 ~~~~~~a~~aL~nLs~~~~-~~~~l~~~g~v~~Lv~lL~~~-------~~~v~~~a~~~L~~ 355 (579)
.++.....+.|.|...+.. .++..+..|+|+.|...+... +..-+..+|+.++|
T Consensus 339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 8999999999999988654 455566889999988776322 23344455555554
No 139
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=66.37 E-value=12 Score=34.47 Aligned_cols=73 Identities=12% Similarity=0.067 Sum_probs=59.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhccC-hhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc
Q 047123 162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDD-DKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVS 234 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~ 234 (579)
..++.+..+|+++++.++..|+..|-.+.+.. +.....|.+..++..|+++++...+..+++.++..+..-+.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999998888754 44556777888999999998734568999999888887664
No 140
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=60.49 E-value=97 Score=30.93 Aligned_cols=106 Identities=16% Similarity=0.196 Sum_probs=72.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc-------
Q 047123 162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVS------- 234 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~------- 234 (579)
.+++.++..-...+.++|...+..|.+.+..+.+.. ...++.|..||+ +.++.+...+..+..++-.
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~-d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLR-DENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999988888899999999999999998665553 235778888998 8899888887776655531
Q ss_pred cCh-------hhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 047123 235 AND-------ESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAIT 275 (579)
Q Consensus 235 ~~~-------~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls 275 (579)
.++ +....+. ..-..++..+++++..++..+...+..+.
T Consensus 137 ~~~~~~~~~e~~W~~m~--~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 137 KSRVISELQEACWDMVS--AMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HC-CCCHHHHHHHHHHH--HHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHH--HHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 011 1222222 12234555566677777777777666643
No 141
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=56.34 E-value=38 Score=29.38 Aligned_cols=72 Identities=8% Similarity=-0.031 Sum_probs=55.2
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCC
Q 047123 415 SFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVR 486 (579)
Q Consensus 415 g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~ 486 (579)
.++..|.+-|.+.++.++..|+.+|-.+. ..+..+..+... ++.|++++....+..|+..+...+..-+...
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 45666777788899999999999988888 556677666654 7788888844467899999999887776543
No 142
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=55.18 E-value=1.4e+02 Score=27.97 Aligned_cols=106 Identities=12% Similarity=0.141 Sum_probs=72.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhc-------
Q 047123 162 LFIRDIFTRLQIGGVEFKKKALESLLQLLKDDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVS------- 234 (579)
Q Consensus 162 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~------- 234 (579)
.+++.++..-...+.++|...+..|.+.+...++... ..++.|..+++ +.++.+...+..+..++-.
T Consensus 53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll~-d~d~~V~K~~I~~~~~iY~~~l~~i~ 126 (257)
T 3gs3_A 53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLLR-DNSAQVIKRVIQACGSIYKNGLQYLC 126 (257)
T ss_dssp HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888876677899999999999999977665433 35778888998 8899998888776555422
Q ss_pred cCh-------hhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 047123 235 AND-------ESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAIT 275 (579)
Q Consensus 235 ~~~-------~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls 275 (579)
.++ +..+.+. ..=..++..+++++..++..+...+..+.
T Consensus 127 ~~~~~~~~~~~~W~~m~--~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 127 SLMEPGDSAEQAWNILS--LIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TSSSCCHHHHHHHHHHH--HHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHH--HHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 021 1222222 22334566667778888888877776644
No 143
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=54.45 E-value=40 Score=28.96 Aligned_cols=73 Identities=14% Similarity=0.076 Sum_probs=57.3
Q ss_pred HHHHHHHHHhc-cCCHHHHHHHHHHHHHHhccC-hhhHHHHHhhCcHHH-HHHhhcc--CCCHHHHHHHHHHHHHhhc
Q 047123 162 LFIRDIFTRLQ-IGGVEFKKKALESLLQLLKDD-DKSAAVVAKEGNVGY-LISLLDF--HHQSSIREQAVLALSIIVS 234 (579)
Q Consensus 162 ~~v~~Lv~~L~-~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~-Lv~LL~~--~~~~~~~~~A~~aL~~La~ 234 (579)
..++.+..+|+ .+++.++..|+..|-.+.+.. +.....+.+..++.. |++++.. .++..+++.++..+..-+.
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 46788999998 589999999999888887754 566667888899998 8898841 2346899999888887665
No 144
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=51.44 E-value=71 Score=27.10 Aligned_cols=73 Identities=12% Similarity=0.003 Sum_probs=57.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccC-----CCCHhHHHHHHHHHHHhhcC
Q 047123 415 SFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMEC-----PKPVGLQEAATDAVLSLLTV 485 (579)
Q Consensus 415 g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~-----~~~~~v~~~a~~aL~~L~~~ 485 (579)
.++..|.+-|.+.++.++..|+.+|-.+. ..+.....+... +..|++++.. ..+..|+..+...+..-+..
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45666777788999999999999998888 567777777665 8889999832 13789999999988888765
Q ss_pred Cc
Q 047123 486 RS 487 (579)
Q Consensus 486 ~~ 487 (579)
..
T Consensus 118 f~ 119 (148)
T 1mhq_A 118 FP 119 (148)
T ss_dssp CT
T ss_pred cC
Confidence 43
No 145
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=50.74 E-value=70 Score=27.19 Aligned_cols=73 Identities=11% Similarity=0.012 Sum_probs=57.0
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccC-----CCCHhHHHHHHHHHHHhhcC
Q 047123 415 SFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMEC-----PKPVGLQEAATDAVLSLLTV 485 (579)
Q Consensus 415 g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~-----~~~~~v~~~a~~aL~~L~~~ 485 (579)
.++..|.+-+.+.++.++..|+.+|-.+. ..+.+...+... +..|++++.. ..+..|+......+..-+..
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 35666777788999999999999988888 666677766665 8889998832 24789999999999888765
Q ss_pred Cc
Q 047123 486 RS 487 (579)
Q Consensus 486 ~~ 487 (579)
++
T Consensus 128 f~ 129 (149)
T 3g2s_A 128 LP 129 (149)
T ss_dssp CT
T ss_pred hC
Confidence 43
No 146
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=46.76 E-value=37 Score=28.58 Aligned_cols=70 Identities=9% Similarity=0.013 Sum_probs=52.3
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123 415 SFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTV 485 (579)
Q Consensus 415 g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~ 485 (579)
.++..+.+-|.++++.++..|+.+|-.+. ..+.....+... +..|++++ ...+..|+......+...+..
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~-~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVL-NKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH
Confidence 35666677788899999999998888887 556666555444 67777777 445789999999988887653
No 147
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=43.70 E-value=44 Score=30.69 Aligned_cols=72 Identities=10% Similarity=0.056 Sum_probs=55.0
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcCC
Q 047123 415 SFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTVR 486 (579)
Q Consensus 415 g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~~ 486 (579)
.++..|.+-|.+.++.++..|+.+|-.+. ..+.....+... ++.|.++++...+..|++.+.+.+...+...
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 45666777788999999999999988888 444555555554 7778888855567899999999988887544
No 148
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=43.23 E-value=2.1e+02 Score=26.67 Aligned_cols=194 Identities=14% Similarity=0.147 Sum_probs=122.2
Q ss_pred hHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccC
Q 047123 158 QDLVLFIRDIFTRLQIGGVEFKKKALESLLQLLKD-DDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSAN 236 (579)
Q Consensus 158 ~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~ 236 (579)
...+..|-+|+...+....+.+...+....+++.. ++..- ..+++.++.+.. +.+.++|...+..|...+...
T Consensus 11 ~~~~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~-~~~~~vrk~~~~Fi~e~~~~k 84 (257)
T 3gs3_A 11 ATARAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAELA-----EEFLESVLSLAH-DSNMEVRKQVVAFVEQVCKVK 84 (257)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGG-CSCHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHH
Confidence 34455677777777775558999999999997654 33322 345777777766 788999999999999888644
Q ss_pred hhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHH--------hcCCCc------cHHHHHhcCcHHHHHHHhcCCCH
Q 047123 237 DESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEA--------ITTDPE------NAWAISAYGGVSVLIEAFRSGTA 302 (579)
Q Consensus 237 ~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~--------Ls~~~~------~~~~i~~~g~i~~Lv~ll~~~~~ 302 (579)
++... .+++.|..+|++.++.+...+..+..+ ++.++. ..|... ...=..++.+..+++.
T Consensus 85 ~~l~~-----~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m-~~lK~~Il~~~~s~n~ 158 (257)
T 3gs3_A 85 VELLP-----HVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNIL-SLIKAQILDMIDNEND 158 (257)
T ss_dssp GGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHH-HHHHHHHHHGGGSSCH
T ss_pred HHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH-HHHHHHHHHHHccCCc
Confidence 44333 347788888988888888777765444 344433 122211 1223445566777888
Q ss_pred HHHHHHHHHHHHhh--cC------------------hhh-----HHHHH--HcCCHHHHHHHhcCC--CHHHHHHHHHHH
Q 047123 303 LTQSHAVGAIRNIA--AV------------------EDI-----KAALA--EEGAVPVLVQSLTSS--SNLAQENAADCI 353 (579)
Q Consensus 303 ~~~~~a~~aL~nLs--~~------------------~~~-----~~~l~--~~g~v~~Lv~lL~~~--~~~v~~~a~~~L 353 (579)
.++..++..+-.+- .. +.+ ...+. ..+.+..|+..+.+. +......++.+|
T Consensus 159 gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL 238 (257)
T 3gs3_A 159 GIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSL 238 (257)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHH
Confidence 88888887775442 10 001 23333 234566677766544 344556777777
Q ss_pred HHHhcCChhh
Q 047123 354 ATLAASGEYF 363 (579)
Q Consensus 354 ~~La~~~~~~ 363 (579)
..++..-+.+
T Consensus 239 ~~Iak~RP~~ 248 (257)
T 3gs3_A 239 CTIAKMRPIF 248 (257)
T ss_dssp HHHHHHCGGG
T ss_pred HHHHHhCcHH
Confidence 7777654443
No 149
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=41.05 E-value=64 Score=30.14 Aligned_cols=103 Identities=15% Similarity=0.080 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHcccchh-HHHHHhhcCcHHHHHHHHHh--------cCCHHHHHHHHHHHHHhc---CChhhHHHHHH
Q 047123 387 IVTVENALLAISSLSLSDS-AARILSSTTSFIIQLGEFIK--------RGNVLLQQVSSSLLGNLS---ISDGNKRAVAS 454 (579)
Q Consensus 387 ~~~~~~A~~aL~~L~~~~~-~~~l~~~~~g~i~~L~~lL~--------~~~~~v~~~A~~aL~~L~---~~~~~~~~i~~ 454 (579)
+..+..+++++.|+-..+. ...++... .....++..+. ..+..++..++.++.|++ ...... .+
T Consensus 104 ~~~~ml~lR~l~NlF~~~~~g~~l~~~~-~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~---~e 179 (253)
T 3gae_A 104 ITLTMLTVRILVNCFNNENWGVKLLESN-QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LE 179 (253)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTSH-HHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSC---TT
T ss_pred hhHHHHHHHHHHHcccCCchHHHHHhcc-hhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccch---HH
Confidence 5789999999999988744 34444331 23344444431 135678889999999998 111110 11
Q ss_pred HHHHHHHhccC--------CCCHhHHHHHHHHHHHhhcCCcchhHHH
Q 047123 455 CMGSLIKLMEC--------PKPVGLQEAATDAVLSLLTVRSNRKELV 493 (579)
Q Consensus 455 ~v~~Lv~lL~~--------~~~~~v~~~a~~aL~~L~~~~~~~~~~~ 493 (579)
....++..+.. .++.+....+..||++|...++..+.+.
T Consensus 180 ~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~~~~a 226 (253)
T 3gae_A 180 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFA 226 (253)
T ss_dssp HHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGGGCCT
T ss_pred HHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHHHHHh
Confidence 12233333311 1377899999999999997665554444
No 150
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=39.93 E-value=93 Score=27.06 Aligned_cols=73 Identities=11% Similarity=0.034 Sum_probs=56.4
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccC-----CCCHhHHHHHHHHHHHhhcC
Q 047123 415 SFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMEC-----PKPVGLQEAATDAVLSLLTV 485 (579)
Q Consensus 415 g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~-----~~~~~v~~~a~~aL~~L~~~ 485 (579)
.++..|.+-+.+.++.++..|+.+|-.+. +....+..+... +..|++++.. ..+..|+..+.+.+..-+..
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 35667777888999999999999998888 445666666665 8889998832 23689999999999888765
Q ss_pred Cc
Q 047123 486 RS 487 (579)
Q Consensus 486 ~~ 487 (579)
..
T Consensus 130 f~ 131 (171)
T 1juq_A 130 LP 131 (171)
T ss_dssp CT
T ss_pred cC
Confidence 43
No 151
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=39.85 E-value=1.1e+02 Score=25.64 Aligned_cols=71 Identities=10% Similarity=0.130 Sum_probs=50.1
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH---HHHHHHhccC-------CCCHhHHHHHHHHHHHh
Q 047123 415 SFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC---MGSLIKLMEC-------PKPVGLQEAATDAVLSL 482 (579)
Q Consensus 415 g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~---v~~Lv~lL~~-------~~~~~v~~~a~~aL~~L 482 (579)
.++..|..-|.+.++.++..|+.+|..|+ .++.+++.+.+. |..+..+-.. +....||..|-+++..|
T Consensus 49 eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 49 EFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 36667888888899999999999999999 677777777776 3333332211 11256788888877766
Q ss_pred hcC
Q 047123 483 LTV 485 (579)
Q Consensus 483 ~~~ 485 (579)
...
T Consensus 129 ~d~ 131 (140)
T 1vdy_A 129 FSE 131 (140)
T ss_dssp TCC
T ss_pred hCc
Confidence 543
No 152
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=37.82 E-value=22 Score=28.58 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhhhcccccchhhh
Q 047123 27 LDLITNILSLLLLSSLTVRSFVGR 50 (579)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~f~~~ 50 (579)
+..++++..-+-.....|..|.+.
T Consensus 29 ~~~I~~I~~eV~~L~~qV~~f~g~ 52 (111)
T 1uk5_A 29 VLKVEAILEKVQGLEQAVDSFEGK 52 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444444443333355566667554
No 153
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=37.44 E-value=32 Score=32.24 Aligned_cols=143 Identities=10% Similarity=0.057 Sum_probs=83.3
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHH-HHccCCHHHHHHHHHHHHHhcCCCc-cHHHH
Q 047123 207 GYLISLLDFHHQSSIREQAVLALSIIVSANDESRKIVFEEGGLGPLLR-ILETGSMPLKEKAAIGVEAITTDPE-NAWAI 284 (579)
Q Consensus 207 ~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~-lL~~~~~~v~~~aa~~L~~Ls~~~~-~~~~i 284 (579)
..+.+++...+ .+--++..++-+.. ++... +.+..++. .+..+++..+..++++++|+-.++. .+..+
T Consensus 59 ~~~~ki~~~WP---~~fP~lDllRl~~~-~~~~~------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~ 128 (253)
T 3gae_A 59 SFANTIRSNWE---IKTPAYDIVRLIVK-KLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLL 128 (253)
T ss_dssp HHHHHHHHHCS---CCHHHHHHHHHHGG-GCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHH
T ss_pred HHHHHHHHhCC---ccchHHHHHHHHHc-CCchH------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHH
Confidence 33445552144 24456777777666 44432 22222222 2334578899999999999998887 56666
Q ss_pred HhcCcHHHHHHHhcC--------CCHHHHHHHHHHHHHhhcChh-hHHHHHHcCCHHHHHHHhcC---------CCHHHH
Q 047123 285 SAYGGVSVLIEAFRS--------GTALTQSHAVGAIRNIAAVED-IKAALAEEGAVPVLVQSLTS---------SSNLAQ 346 (579)
Q Consensus 285 ~~~g~i~~Lv~ll~~--------~~~~~~~~a~~aL~nLs~~~~-~~~~l~~~g~v~~Lv~lL~~---------~~~~v~ 346 (579)
..+.....+++.+.+ .+..++..++..+.|++..-. .+. +......++..+.. .+++..
T Consensus 129 ~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~ 205 (253)
T 3gae_A 129 ESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAA 205 (253)
T ss_dssp TSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHH
T ss_pred hcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHH
Confidence 554344555554422 244688888889999976211 010 11123344444431 366888
Q ss_pred HHHHHHHHHHhcCChh
Q 047123 347 ENAADCIATLAASGEY 362 (579)
Q Consensus 347 ~~a~~~L~~La~~~~~ 362 (579)
..++-+|+++...++.
T Consensus 206 yR~LvAlGtL~~~~~~ 221 (253)
T 3gae_A 206 YRLTVAYGNLATVEPT 221 (253)
T ss_dssp HHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHhCcHH
Confidence 8899999998865543
No 154
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=37.12 E-value=59 Score=29.59 Aligned_cols=71 Identities=8% Similarity=0.014 Sum_probs=53.2
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHHHHHhccCCCCHhHHHHHHHHHHHhhcC
Q 047123 415 SFIIQLGEFIKRGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGSLIKLMECPKPVGLQEAATDAVLSLLTV 485 (579)
Q Consensus 415 g~i~~L~~lL~~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~Lv~lL~~~~~~~v~~~a~~aL~~L~~~ 485 (579)
.++..|.+-|.+.++.++..|+.+|-.+. ..+..+..+... ++.|++++.+..+..|+..+.+.+..-+..
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 35566677788899999999999999888 334555555554 778888885556789999888888777643
No 155
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=36.65 E-value=3.3e+02 Score=27.05 Aligned_cols=101 Identities=12% Similarity=0.127 Sum_probs=72.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhc-cChhhHHHHHhhCcHHHHHHhhccCCCHHHHHHHHHHHHHhhccChhhHH
Q 047123 163 FIRDIFTRLQIGGVEFKKKALESLLQLLK-DDDKSAAVVAKEGNVGYLISLLDFHHQSSIREQAVLALSIIVSANDESRK 241 (579)
Q Consensus 163 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~-~~~~~~~~i~~~g~v~~Lv~LL~~~~~~~~~~~A~~aL~~La~~~~~~~~ 241 (579)
-|-+|++..+....+.+...+..+.+++- .++. .-..+++.++.+-. +.+.++|...+..|...+..+.+...
T Consensus 26 ~v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~-d~~~~vRk~~a~FieEa~~~~~el~~ 99 (386)
T 3o2t_A 26 RVVDLLNQAALITNDSKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQA-DKSIEVRKFVIGFIEEACKRDIELLL 99 (386)
T ss_dssp HHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGG-CSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHhhhccChHHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555544333578899999999754 4443 23678999999888 88999999999999988874444432
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHh
Q 047123 242 IVFEEGGLGPLLRILETGSMPLKEKAAIGVEAI 274 (579)
Q Consensus 242 ~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~L 274 (579)
.+++.|..+|++.++.+...+..+..++
T Consensus 100 -----~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 100 -----KLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp -----HHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3477888888888888888777766664
No 156
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=31.67 E-value=3.8e+02 Score=30.45 Aligned_cols=181 Identities=11% Similarity=0.065 Sum_probs=96.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcc---CCCChHHHHHHHHHHHHcccchhHH
Q 047123 331 VPVLVQSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQD---STSSIVTVENALLAISSLSLSDSAA 407 (579)
Q Consensus 331 v~~Lv~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~---~~~~~~~~~~A~~aL~~L~~~~~~~ 407 (579)
+.-|+++--+..++++..|-.+|......-+..+.. +++.+++.|+. +.+ .+-.+-|+.+| .... ..
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~-~~~iKGaLy~L---~~k~-~~ 204 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHD-YMKIQVILNVL---LIKK-IH 204 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCS-CHHHHHHHHHT---TSHH-HH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCC-HHHHHHHHHHH---hhhh-hh
Confidence 455666666778899999999999887655444433 36777777765 333 23344444433 3221 11
Q ss_pred HHHhhcCcHHHH----HHHHHhcCCHHHHHHHHHHHHHhcC------------------------------------Chh
Q 047123 408 RILSSTTSFIIQ----LGEFIKRGNVLLQQVSSSLLGNLSI------------------------------------SDG 447 (579)
Q Consensus 408 ~l~~~~~g~i~~----L~~lL~~~~~~v~~~A~~aL~~L~~------------------------------------~~~ 447 (579)
..+..+...+.. |++....+.+.++..+-.+...+.. ..+
T Consensus 205 ~~~~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~ 284 (997)
T 1vsy_5 205 RKLMTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKK 284 (997)
T ss_dssp HHGGGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTH
T ss_pred hHHhcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHH
Confidence 222222233333 3333344555666544444333220 111
Q ss_pred hHHHHHHH----HHHHHHhccCCCC--HhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchhhhhHHHHHH
Q 047123 448 NKRAVASC----MGSLIKLMECPKP--VGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEALNKKFPVMV 521 (579)
Q Consensus 448 ~~~~i~~~----v~~Lv~lL~~~~~--~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~av~~ 521 (579)
.++...+. ...|+.+.++..+ -.....++..|.+|....+ .......+..+++.+.++.+. .++.++.+
T Consensus 285 ~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d----~~~~~~~v~~~~~~l~~dhp~-~R~~a~~~ 359 (997)
T 1vsy_5 285 KREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE----SKPDKRAVFSIISQISTKHPE-IIHLVVKS 359 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS----CCCCHHHHHHHHGGGGGCCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHhhcCCCHH-HHHHHHHH
Confidence 12222221 3344455534455 6777888888777764332 111344567788888887777 77777776
Q ss_pred HHHHh
Q 047123 522 TAAVL 526 (579)
Q Consensus 522 L~~L~ 526 (579)
+..+.
T Consensus 360 l~~il 364 (997)
T 1vsy_5 360 LLSTC 364 (997)
T ss_dssp HTHHH
T ss_pred HHHHH
Confidence 65543
No 157
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=28.44 E-value=2.7e+02 Score=23.45 Aligned_cols=82 Identities=10% Similarity=0.077 Sum_probs=61.0
Q ss_pred cChhhHHHHHHcCCHHHHHHHhc---C---CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHH
Q 047123 317 AVEDIKAALAEEGAVPVLVQSLT---S---SSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTV 390 (579)
Q Consensus 317 ~~~~~~~~l~~~g~v~~Lv~lL~---~---~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~ 390 (579)
...+.+..+++.|++..+-..|. + ++..++...+.+|.++-.. ++.+.+.|.-..++.+-++....++.+
T Consensus 49 ~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI~----~e~Lk~SglGkvv~~l~k~~~et~~nk 124 (145)
T 2xpp_A 49 MSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIH----KEHLVTSGVGKIVYFYSINPKESKEVR 124 (145)
T ss_dssp TCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCC----HHHHHHHCHHHHHHHHHHCTTSCHHHH
T ss_pred hhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCCC----HHHhhcCCCCcchhhhhcCCccCHHHH
Confidence 34455778889999988877774 2 3568999999999998642 567778887777777777777667888
Q ss_pred HHHHHHHHHccc
Q 047123 391 ENALLAISSLSL 402 (579)
Q Consensus 391 ~~A~~aL~~L~~ 402 (579)
..|-..+...+.
T Consensus 125 ~la~~Li~~WsR 136 (145)
T 2xpp_A 125 ASAKALVQKWTN 136 (145)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777765543
No 158
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=25.58 E-value=91 Score=27.84 Aligned_cols=113 Identities=15% Similarity=0.084 Sum_probs=62.5
Q ss_pred cHHHHHHHhcC------CCHHHHHHHHHHHHHhhcChhhHHHHHHcCCHHHHHHHhcC---CCHHHHHHHHHHHHHHhcC
Q 047123 289 GVSVLIEAFRS------GTALTQSHAVGAIRNIAAVEDIKAALAEEGAVPVLVQSLTS---SSNLAQENAADCIATLAAS 359 (579)
Q Consensus 289 ~i~~Lv~ll~~------~~~~~~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv~lL~~---~~~~v~~~a~~~L~~La~~ 359 (579)
.+|.++.++.+ .+.............|..++...-...-+..+|.++.++-. +...+|+.|+..|..++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 44666655442 34555555666666666665543333333367777777621 2338999999999999852
Q ss_pred ChhhHHHHHhcCcHHHHHHhhccCCCChHHHHHHHHHHHHccc
Q 047123 360 GEYFRLLIIQERGLQRLMHLIQDSTSSIVTVENALLAISSLSL 402 (579)
Q Consensus 360 ~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~ 402 (579)
....- .-.+...+..+.+.+.+...+....--|+..|..+..
T Consensus 121 ~~~~y-~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 121 YSRSY-KTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp HTTTS-TTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred hCccC-chHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH
Confidence 11100 0112334566776665554434555556666655544
No 159
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=25.36 E-value=8.7e+02 Score=28.42 Aligned_cols=290 Identities=13% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcChhhHHHHHH-
Q 047123 249 LGPLLRILETGSMPLKEKAAIGVEAITTDPENAWAISAYGGVSVLIEAFRSGTALTQSHAVGAIRNIAAVEDIKAALAE- 327 (579)
Q Consensus 249 l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLs~~~~~~~~l~~- 327 (579)
...+++++.-.+..+|......|-.+..+.+..... ..|.+++.. ++.+....+.+|.||..+++....+.+
T Consensus 159 ~~ki~~vl~vap~~lQ~diI~sLPeIl~ds~H~~v~------~~L~~lL~~-~~~L~~~iLdaLs~L~Ls~~~l~~vr~~ 231 (1323)
T 3s4w_B 159 TAQMMQLISVAPVNLQHDFITSLPEILGDSQHANVG------KELGELLVQ-NTSLTVPILDVFSSLRLDPNFLSKIRQL 231 (1323)
T ss_dssp HHHHHHHHHHSCTTTHHHHHHTHHHHSCGGGHHHHH------HHHHHHHHH-CSTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHhHHHhcchhhHHHH------HHHHHHHhc-CcchHHHHHHHHHcCCCCHHHHHHHHHH
Q ss_pred ---------cCCHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCh--------hhHHHHHhcC------------------
Q 047123 328 ---------EGAVPVLVQSL-TSSSNLAQENAADCIATLAASGE--------YFRLLIIQER------------------ 371 (579)
Q Consensus 328 ---------~g~v~~Lv~lL-~~~~~~v~~~a~~~L~~La~~~~--------~~r~~l~~~g------------------ 371 (579)
...+|.+++++ ++.+..-...++..|+..-.... .....+.+.|
T Consensus 232 vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~evI~~LR~~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~l 311 (1323)
T 3s4w_B 232 VMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIAELRENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDCIVL 311 (1323)
T ss_dssp HHHSTTSSCTTHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHCC----------------------------CHHHHHHHH
T ss_pred HHHHhccCChhhhHHHHHHHHHhCCHhhHHHHHHHHHHHcCccccccchhhhhhhhhhhccccccCCccccccccchHHH
Q ss_pred cHHHHHHhhccCCCChHHHHHHHHHHHHcccc---hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhh
Q 047123 372 GLQRLMHLIQDSTSSIVTVENALLAISSLSLS---DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGN 448 (579)
Q Consensus 372 ~i~~Lv~ll~~~~~~~~~~~~A~~aL~~L~~~---~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~ 448 (579)
.++.+-.-+.... .+.+.-.++|.++... ...+-++-- ++-+.+..-+..+-.++.+.......
T Consensus 312 ild~lks~l~~~k---~i~eAwlK~I~~~~~~~~hk~~Dl~vLl----------ii~s~n~~~rk~aE~ilrkkI~~G~i 378 (1323)
T 3s4w_B 312 VFDVIKSAIRYEK---TISEAWFKAIERIESAAEHKSLDVVMLL----------IIYSTSTQTKKGVEKLLRNKIQSDCI 378 (1323)
T ss_dssp HHHHHHHHHHHCH---HHHHHHHHHHHHGGGSTTCCTHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHhcCh---HHHHHHHHHHhCCCcccccchhHHHHHH----------HHHcCCchhHHHHHHHHHHHHHcCCc
Q ss_pred HHHHHHH------------HHHHHH----hccCCCCHhHHHHHHHHHHHhhcCCcchhHHHhhcccHHHHHhhcCCCchh
Q 047123 449 KRAVASC------------MGSLIK----LMECPKPVGLQEAATDAVLSLLTVRSNRKELVRDEKSVMRLMQMLDPKNEA 512 (579)
Q Consensus 449 ~~~i~~~------------v~~Lv~----lL~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~ 512 (579)
...+... .+.++. ++ .+.+..+++.+...-..+-...+ .+.+ ...+..|+.-.-+++..
T Consensus 379 t~~ll~~~f~~h~~vL~~~f~siL~La~~Ll-~S~~~~v~~Fg~~lY~~lF~~fd---~~~q-qeVl~~Lv~hi~sg~~~ 453 (1323)
T 3s4w_B 379 QEQLLDSAFSTHYLVLKDICPSILLLAQTLF-HSQDQRIILFGSLLYKYAFKFFD---TYCQ-QEVVGALVTHVCSGTEA 453 (1323)
T ss_dssp CHHHHHHHHHHHHHHHTTSHHHHHHHHHHHH-TSSSHHHHHHHHHHHHHHHHSSC---HHHH-HHHHHHHHHHHHHCCHH
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhcc---chhH-HHHHHHHHhhhcCCCcH
Q ss_pred hhhHHHHHHHHHHhCCCChhHHHHHHHcCchHHHHhhhccCCchHHHHHHHHhc
Q 047123 513 LNKKFPVMVTAAVLGGGSNGCRKRLVAAGAYQHLQKLAETEVPGAKKVLQRLAG 566 (579)
Q Consensus 513 ~~k~~av~~L~~L~~~~~~~~r~~i~~~g~~~~L~~L~~~~~~~ak~~~~~l~~ 566 (579)
....++.+|..|+.... ..-.--..=.-..|-.+-.......++++.-|.+
T Consensus 454 -eVd~ALdvL~~L~~~~~--~~l~~~a~~l~giLD~l~~l~~~QiRklf~iL~~ 504 (1323)
T 3s4w_B 454 -EVDTALDVLLELIVLNA--SAMRLNAAFVKGILDYLENMSPQQIRKIFCILST 504 (1323)
T ss_dssp -HHHHHHHHHHHHHHHCH--HHHHHTHHHHHGGGGGGGGCCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCH--HHHhHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
No 160
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=24.94 E-value=2.1e+02 Score=23.87 Aligned_cols=73 Identities=23% Similarity=0.221 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhc-cChhhHHHHHhhC-cHHHHHHhhccCCC--------HHHHHHHHHHHH
Q 047123 161 VLFIRDIFTRLQIGGVEFKKKALESLLQLLK-DDDKSAAVVAKEG-NVGYLISLLDFHHQ--------SSIREQAVLALS 230 (579)
Q Consensus 161 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~-~~~~~~~~i~~~g-~v~~Lv~LL~~~~~--------~~~~~~A~~aL~ 230 (579)
.....-|..+|+..++.++.+|+..|..++. +++..+..+...- .|..+..+=. .++ ..||+.|-.++.
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g-~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKG-HPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCC-CCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCC-CCCcccccchhHHHHHHHHHHHH
Confidence 3456778899999999999999999999986 4445555555433 2222222211 111 568888877777
Q ss_pred Hhhc
Q 047123 231 IIVS 234 (579)
Q Consensus 231 ~La~ 234 (579)
.|..
T Consensus 127 ll~d 130 (140)
T 1vdy_A 127 AIFS 130 (140)
T ss_dssp HHTC
T ss_pred HHhC
Confidence 7765
No 161
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=24.29 E-value=2.7e+02 Score=23.61 Aligned_cols=71 Identities=14% Similarity=0.077 Sum_probs=51.8
Q ss_pred cHHHHHHHHHh-cCCHHHHHHHHHHHHHhc--CChhhHHHHHHH--HHH-HHHhccC--CCCHhHHHHHHHHHHHhhcC
Q 047123 415 SFIIQLGEFIK-RGNVLLQQVSSSLLGNLS--ISDGNKRAVASC--MGS-LIKLMEC--PKPVGLQEAATDAVLSLLTV 485 (579)
Q Consensus 415 g~i~~L~~lL~-~~~~~v~~~A~~aL~~L~--~~~~~~~~i~~~--v~~-Lv~lL~~--~~~~~v~~~a~~aL~~L~~~ 485 (579)
.++..|.+-|+ +.++.++..|+.+|-.+. ..+.....+... ++. |++++.. ..+..|+..+.+.+..-+..
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 35666677776 578999999999988888 557777767665 777 7888722 23468899888888777653
No 162
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=22.78 E-value=2.3e+02 Score=28.57 Aligned_cols=133 Identities=11% Similarity=0.056 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhhccChhhHHHHHhcCCHHHHH-HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh-cCcHHHHHHHhcC
Q 047123 222 REQAVLALSIIVSANDESRKIVFEEGGLGPLL-RILETGSMPLKEKAAIGVEAITTDPENAWAISA-YGGVSVLIEAFRS 299 (579)
Q Consensus 222 ~~~A~~aL~~La~~~~~~~~~i~~~g~l~~Lv-~lL~~~~~~v~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~ll~~ 299 (579)
+--++..++.+.. ++.... .+..++ ..+...++..+..+.++++|+-.++.....+.. ......+++.+..
T Consensus 243 ~FPaLDLLRl~v~-~p~~~~------~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVK-KLPYSS------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGG-GCSCGG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHc-CCchHH------HHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 5557777777776 443221 222233 233345788899999999999988875444443 3334566665431
Q ss_pred --------CCHHHHHHHHHHHHHhhcChhh-HHHHHHcCCHHHHHHHhc---------CCCHHHHHHHHHHHHHHhcCCh
Q 047123 300 --------GTALTQSHAVGAIRNIAAVEDI-KAALAEEGAVPVLVQSLT---------SSSNLAQENAADCIATLAASGE 361 (579)
Q Consensus 300 --------~~~~~~~~a~~aL~nLs~~~~~-~~~l~~~g~v~~Lv~lL~---------~~~~~v~~~a~~~L~~La~~~~ 361 (579)
.+..++..++..+.|++..-.. +. +......++.++. ..+++....++-+|++|...++
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 2346788888888999762110 00 0122334555554 2477899999999999986554
Q ss_pred hhH
Q 047123 362 YFR 364 (579)
Q Consensus 362 ~~r 364 (579)
..+
T Consensus 393 ~~~ 395 (425)
T 3pst_A 393 TLR 395 (425)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 163
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=21.80 E-value=1.2e+02 Score=30.04 Aligned_cols=132 Identities=11% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHHHhhccChhhHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHh------
Q 047123 225 AVLALSIIVSANDESRKIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTDPE-NAWAISAYGGVSVLIEAF------ 297 (579)
Q Consensus 225 A~~aL~~La~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~ll------ 297 (579)
++..++.+.. ++.....+.. .+-..+...++..+..+.++++|+-.++. .+..+........+++.+
T Consensus 183 ~LDLLRl~v~-~~~~~~~l~~-----li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~ 256 (362)
T 3l3f_X 183 AYDIVRLIVK-KLPYSSDIKD-----YIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQ 256 (362)
T ss_dssp HHHHHHHHGG-GCSCGGGGHH-----HHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSS
T ss_pred HHHHHHHHhc-CCChHHHHHH-----HHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhh
Q ss_pred --cCCCHHHHHHHHHHHHHhhc-ChhhHHHHHHcCCHHHHHHHhc---------CCCHHHHHHHHHHHHHHhcCChhhHH
Q 047123 298 --RSGTALTQSHAVGAIRNIAA-VEDIKAALAEEGAVPVLVQSLT---------SSSNLAQENAADCIATLAASGEYFRL 365 (579)
Q Consensus 298 --~~~~~~~~~~a~~aL~nLs~-~~~~~~~l~~~g~v~~Lv~lL~---------~~~~~v~~~a~~~L~~La~~~~~~r~ 365 (579)
...+..++..++..+.|++. ....+.. ......++.++. ..+++....++-+|++|...++..+.
T Consensus 257 ~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~---~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~~~ 333 (362)
T 3l3f_X 257 ASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQ 333 (362)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCSC---TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHH
No 164
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=21.71 E-value=3.1e+02 Score=27.64 Aligned_cols=136 Identities=10% Similarity=0.022 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHcCCHHHHH-HHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccC
Q 047123 305 QSHAVGAIRNIAAVEDIKAALAEEGAVPVLV-QSLTSSSNLAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDS 383 (579)
Q Consensus 305 ~~~a~~aL~nLs~~~~~~~~l~~~g~v~~Lv-~lL~~~~~~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~ 383 (579)
+..++..|+-+..++.... .+..++ ..+.+..+..+-.++++++|+-......+..+........+++.+...
T Consensus 243 ~FPaLDLLRl~v~~p~~~~------~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 316 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYSS------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 316 (425)
T ss_dssp CHHHHHHHHHHGGGCSCGG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHcCCchHH------HHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHH
Confidence 5567777776665443221 222232 223455678888999999999776543344443333345666654322
Q ss_pred C------CChHHHHHHHHHHHHcccchhHHHHHhhcCcHHHHHHHHHh---------cCCHHHHHHHHHHHHHhc-CChh
Q 047123 384 T------SSIVTVENALLAISSLSLSDSAARILSSTTSFIIQLGEFIK---------RGNVLLQQVSSSLLGNLS-ISDG 447 (579)
Q Consensus 384 ~------~~~~~~~~A~~aL~~L~~~~~~~~l~~~~~g~i~~L~~lL~---------~~~~~v~~~A~~aL~~L~-~~~~ 447 (579)
- .+..++..++..+.|++........ +. ..+..+++++. ..+.+....++.||++|. ..++
T Consensus 317 l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~-~~--el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~ 393 (425)
T 3pst_A 317 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-DL--ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 393 (425)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS-CT--THHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHH
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccc-hH--HHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 1 1125677777888888875111000 01 34445555555 357889999999999998 4444
Q ss_pred hH
Q 047123 448 NK 449 (579)
Q Consensus 448 ~~ 449 (579)
.+
T Consensus 394 ~~ 395 (425)
T 3pst_A 394 LR 395 (425)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 165
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=20.33 E-value=6.8e+02 Score=25.32 Aligned_cols=226 Identities=11% Similarity=0.049 Sum_probs=107.1
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhc-
Q 047123 241 KIVFEEGGLGPLLRILETGSMPLKEKAAIGVEAITTD-PENAWAISAYGGVSVLIEAFRS-GTALTQSHAVGAIRNIAA- 317 (579)
Q Consensus 241 ~~i~~~g~l~~Lv~lL~~~~~~v~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLs~- 317 (579)
...++...+..|+.++++.++.-|.....+|..+-.. ...+..|. ...-..+...+-. .........+.++..+-.
T Consensus 156 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Ir-k~i~nif~~fi~e~e~~nGIaeLLeilgSIinG 234 (449)
T 2npp_B 156 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR-KQINNIFYRFIYETEHHNGIAELLEILGSIING 234 (449)
T ss_dssp GGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHH-HHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSS
T ss_pred hhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhc
Confidence 4444556677888888888888787777777665421 12221111 1111112222211 111111122222322211
Q ss_pred -----ChhhHHHHHHcCCHHHHHHHhcCCCH-HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhccCCCChHHHH
Q 047123 318 -----VEDIKAALAEEGAVPVLVQSLTSSSN-LAQENAADCIATLAASGEYFRLLIIQERGLQRLMHLIQDSTSSIVTVE 391 (579)
Q Consensus 318 -----~~~~~~~l~~~g~v~~Lv~lL~~~~~-~v~~~a~~~L~~La~~~~~~r~~l~~~g~i~~Lv~ll~~~~~~~~~~~ 391 (579)
.++.+..+ ...|+.+.+...- .-...-..|+......|+..-. -++..|++++-..++ .++
T Consensus 235 fa~PLKeehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~-----~vi~~LLk~WP~tns---~Ke 301 (449)
T 2npp_B 235 FALPLKEEHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTE-----PVVMALLKYWPKTHS---PKE 301 (449)
T ss_dssp CCSSCCHHHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHTCCSSCH---HHH
T ss_pred cCCCCcHHHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHH-----HHHHHHHHhCCCCCc---hHH
Confidence 12222222 2233334433321 1222333444444444443221 234445554444332 232
Q ss_pred -HHHHHHHHcccc---hhHHHHHhhcCcHHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhh-------HHHHHHH-HHHH
Q 047123 392 -NALLAISSLSLS---DSAARILSSTTSFIIQLGEFIKRGNVLLQQVSSSLLGNLSISDGN-------KRAVASC-MGSL 459 (579)
Q Consensus 392 -~A~~aL~~L~~~---~~~~~l~~~~~g~i~~L~~lL~~~~~~v~~~A~~aL~~L~~~~~~-------~~~i~~~-v~~L 459 (579)
.-+.-|..+... .....+... ...++...+.+.+..|-+.|.... .++.. .+.+... ++.|
T Consensus 302 vlFL~eleeile~~~~~ef~~i~~~---lF~~la~ci~S~hfqVAErAL~~w----~N~~i~~li~~n~~~IlPii~p~L 374 (449)
T 2npp_B 302 VMFLNELEEILDVIEPSEFVKIMEP---LFRQLAKCVSSPHFQVAERALYYW----NNEYIMSLISDNAAKILPIMFPSL 374 (449)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH---HHHHHHHHHTCSCHHHHHHHHGGG----GCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH---HHHHHHHHHcCCCHHHHHHHHHHH----CCHHHHHHHHhchhhhHHhhHHHH
Confidence 223333333332 333334443 677788888999998888765432 33333 3333333 4445
Q ss_pred HHhccCCCCHhHHHHHHHHHHHhhcCCc
Q 047123 460 IKLMECPKPVGLQEAATDAVLSLLTVRS 487 (579)
Q Consensus 460 v~lL~~~~~~~v~~~a~~aL~~L~~~~~ 487 (579)
.+..+...+..++..+..++.-+...++
T Consensus 375 ~~~s~~HWn~~V~~la~~vlk~l~e~d~ 402 (449)
T 2npp_B 375 YRNSKTHWNKTIHGLIYNALKLFMEMNQ 402 (449)
T ss_dssp TSCTTCCSSTTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHCH
Confidence 5544466689999999999998876543
Done!