BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047125
         (166 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DKX|A Chain A, Solution Structure Of The Sam_pnt-Domain Of Ets
           Transcription Factor Pdef (Prostate Ets)
          Length = 96

 Score = 27.7 bits (60), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 128 QELLSKAEEEFGYNNPMGGLTIPYREDIFINLTSG 162
           +EL + +EE+F   +P+GG  +    DI+ +  SG
Sbjct: 58  KELCAMSEEQFRQRSPLGGDVLHAHLDIWKSAASG 92


>pdb|4F7A|A Chain A, Crystal Structure Of A Susd Homolog (Bvu_2203) From
           Bacteroides Vulgatus Atcc 8482 At 1.85 A Resolution
          Length = 511

 Score = 26.9 bits (58), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 34  GTGVWGIYFDKASHDEQVSGSRIPRIGIFYRSLVAGEYEQDY 75
           G   WG  +  A+    ++G   PRI I+Y      E+ ++Y
Sbjct: 254 GVAGWGETYXGATIASVLNGYEDPRISIYYNPATLAEHTEEY 295


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.138    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,085,756
Number of Sequences: 62578
Number of extensions: 193385
Number of successful extensions: 268
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 266
Number of HSP's gapped (non-prelim): 2
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)