Query 047125
Match_columns 166
No_of_seqs 117 out of 597
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 13:37:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047125.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047125hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nz0_B Potassium voltage-gated 40.2 46 0.0016 25.1 5.0 62 97-164 32-94 (140)
2 2vkp_A BTB/POZ domain-containi 35.3 54 0.0018 21.7 4.3 57 102-163 11-70 (109)
3 2lmc_A Bacterial RNA polymeras 33.8 90 0.0031 22.6 5.4 57 78-140 10-69 (84)
4 1und_A Advillin, P92; actin bi 31.5 12 0.00041 23.1 0.4 19 120-138 1-19 (37)
5 1y74_B MLIN-2/CASK, peripheral 28.8 19 0.00065 22.5 1.0 20 120-139 26-49 (50)
6 3qli_A Coenzyme A transferase; 22.1 48 0.0016 29.8 2.6 44 96-140 403-454 (455)
7 2al3_A TUG long isoform; TUG U 20.5 1.1E+02 0.0039 21.9 3.9 40 100-143 9-48 (90)
8 1vd2_A Protein kinase C, IOTA 18.2 2.6E+02 0.009 19.7 5.7 45 100-149 5-49 (89)
9 2xko_C PIPX, global nitrogen r 16.9 14 0.00049 27.1 -1.6 11 120-130 5-15 (89)
10 3ga1_A Nucleus accumbens-assoc 16.8 1.4E+02 0.0048 20.5 3.6 50 102-163 36-89 (129)
No 1
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=40.23 E-value=46 Score=25.12 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=43.0
Q ss_pred CCCceEEEEEcCCCCceEEEEeccCC-CCHHHHHHHHhHHHhcCCcCCCCceEeeccHHHHHHHHHhhc
Q 047125 97 IRSFLLEVEVGRPENQKLASTPVSFL-SQPPFQELLSKAEEEFGYNNPMGGLTIPYREDIFINLTSGLN 164 (166)
Q Consensus 97 VPKG~faVYVG~e~e~rRFVVPv~yL-nHPlFqeLLeqAEEEfGf~~~~G~LtIPCdv~~FE~VL~~I~ 164 (166)
.....+.+-||. +||.+..+-| ++|. .+|..++...-++.+.|.+-|-.+...|++||..+.
T Consensus 32 ~~~~~V~LNVGG----~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR 94 (140)
T 2nz0_B 32 RQDELIVLNVSG----RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYR 94 (140)
T ss_dssp TCCCEEEEEETT----EEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECC----EEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHh
Confidence 355678888985 6899887655 3342 244444444445444489999999999999998764
No 2
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=35.33 E-value=54 Score=21.69 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=37.2
Q ss_pred EEEEEcCCCCceEEEEeccCC--CCHHHHHHHHhHHHhcCCcCCCCceEee-ccHHHHHHHHHhh
Q 047125 102 LEVEVGRPENQKLASTPVSFL--SQPPFQELLSKAEEEFGYNNPMGGLTIP-YREDIFINLTSGL 163 (166)
Q Consensus 102 faVYVG~e~e~rRFVVPv~yL--nHPlFqeLLeqAEEEfGf~~~~G~LtIP-Cdv~~FE~VL~~I 163 (166)
+.+.||++.+.++|-+.=..| ..|.|+.++...-.|-. ..|.|+ .+.+.|+.++..+
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-----~~i~l~~~~~~~f~~~l~~i 70 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-----SEIHIPDVEPAAFLILLKYM 70 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-----CEEEETTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-----CeEEeCCCCHHHHHHHHHHH
Confidence 345677653337888877777 58999999975433322 368886 5889999998765
No 3
>2lmc_A Bacterial RNA polymerase inhibitor; transferase, transcription; NMR {Enterobacteria phage T7} PDB: 2wnm_A
Probab=33.81 E-value=90 Score=22.58 Aligned_cols=57 Identities=18% Similarity=0.086 Sum_probs=27.2
Q ss_pred cCCCCCCCCCCCCCCC--C-CCCCCceEEEEEcCCCCceEEEEeccCCCCHHHHHHHHhHHHhcCC
Q 047125 78 RSRMYPPRGHSRSRPP--T-RSIRSFLLEVEVGRPENQKLASTPVSFLSQPPFQELLSKAEEEFGY 140 (166)
Q Consensus 78 ~s~gy~~~g~~~~~~~--~-~~VPKG~faVYVG~e~e~rRFVVPv~yLnHPlFqeLLeqAEEEfGf 140 (166)
.|+|++|.|.-.+.-. + ...-|-+++-..|.. +-|.|||--= .+.+-|+.||+||+-
T Consensus 10 ~~~~~~~~~~~ms~~n~g~l~~~~KKf~vtveg~~---~s~EVPV~A~---sLdEAlE~AE~eYee 69 (84)
T 2lmc_A 10 HSSGLVPRGSHMSNVNTGSLSVDNKKFWATVESSE---HSFEVPIYAE---TLDEALELAEWQYVP 69 (84)
T ss_dssp ----------------CCSCCCCSSEEEEEEECSS---CEEEEEECCS---SHHHHHHHHHHTTGG
T ss_pred cccCccccccccceeccccccccceEEEEEEeccc---ceEEEeeecc---cHHHHHHHHHHHhhh
Confidence 4577788774422111 1 124566666667777 5788988543 367778899988853
No 4
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=31.47 E-value=12 Score=23.10 Aligned_cols=19 Identities=21% Similarity=0.517 Sum_probs=16.8
Q ss_pred cCCCCHHHHHHHHhHHHhc
Q 047125 120 SFLSQPPFQELLSKAEEEF 138 (166)
Q Consensus 120 ~yLnHPlFqeLLeqAEEEf 138 (166)
.||+.-.|++++.++.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999987
No 5
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=28.84 E-value=19 Score=22.49 Aligned_cols=20 Identities=40% Similarity=0.634 Sum_probs=15.0
Q ss_pred cCCCCHHHHHHHH----hHHHhcC
Q 047125 120 SFLSQPPFQELLS----KAEEEFG 139 (166)
Q Consensus 120 ~yLnHPlFqeLLe----qAEEEfG 139 (166)
..|+.|-||+||+ -|.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 4578899999996 4566664
No 6
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=22.13 E-value=48 Score=29.81 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=28.9
Q ss_pred CCCCceEEEEEcCCC-----C---ceEEEEeccCCCCHHHHHHHHhHHHhcCC
Q 047125 96 SIRSFLLEVEVGRPE-----N---QKLASTPVSFLSQPPFQELLSKAEEEFGY 140 (166)
Q Consensus 96 ~VPKG~faVYVG~e~-----e---~rRFVVPv~yLnHPlFqeLLeqAEEEfGf 140 (166)
..|++++=+.|-+-. + .+|-..=+. +.||.||+.|.+++++.|+
T Consensus 403 tt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 403 TTPRIDTHYIVTEFGAVNLKGLSSTERALRIIE-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp SBCTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC
T ss_pred ccCcccccEEEeccEEEECCCCCHHHHHHHHHH-ccCcchHHHHHHHHHHcCC
Confidence 457887777764332 1 133332233 9999999999988888764
No 7
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=20.45 E-value=1.1e+02 Score=21.92 Aligned_cols=40 Identities=8% Similarity=0.033 Sum_probs=28.2
Q ss_pred ceEEEEEcCCCCceEEEEeccCCCCHHHHHHHHhHHHhcCCcCC
Q 047125 100 FLLEVEVGRPENQKLASTPVSFLSQPPFQELLSKAEEEFGYNNP 143 (166)
Q Consensus 100 G~faVYVG~e~e~rRFVVPv~yLnHPlFqeLLeqAEEEfGf~~~ 143 (166)
|--.+++.... +|+.|++. ..-.+.++|++|=+.||++.+
T Consensus 9 ~m~v~Vl~~n~--rr~~VKvt--p~t~L~~VL~eaC~K~gl~~~ 48 (90)
T 2al3_A 9 GSAVSVLAPNG--RRHTVKVT--PSTVLLQVLEDTCRRQDFNPS 48 (90)
T ss_dssp -CCEEEECTTS--CEEEECCC--TTSBHHHHHHHHHHHTTCCGG
T ss_pred ccEEEEEcCCC--cEEEEEEC--CCCCHHHHHHHHHHHhCCChh
Confidence 33344444444 89999993 333678899999999999864
No 8
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=18.19 E-value=2.6e+02 Score=19.68 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=29.9
Q ss_pred ceEEEEEcCCCCceEEEEeccCCCCHHHHHHHHhHHHhcCCcCCCCceEe
Q 047125 100 FLLEVEVGRPENQKLASTPVSFLSQPPFQELLSKAEEEFGYNNPMGGLTI 149 (166)
Q Consensus 100 G~faVYVG~e~e~rRFVVPv~yLnHPlFqeLLeqAEEEfGf~~~~G~LtI 149 (166)
|-+-|-+-=+++..|+-||. ...|++|.++-.+-|++..+ .++++
T Consensus 5 ~~vkvK~~~~gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~~-~~f~l 49 (89)
T 1vd2_A 5 SQVRVKAYYRGDIMITHFEP----SISFEGLCNEVRDMCSFDNE-QLFTM 49 (89)
T ss_dssp SCEEEEEESSSCEEEEEECT----TCCHHHHHHHHHHHTTCCSS-CCEEE
T ss_pred CeEEEEEEeCCeEEEEECCC----CCCHHHHHHHHHHHhCCCCC-CeEEE
Confidence 33455442222237888887 46899999999999998644 34443
No 9
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=16.86 E-value=14 Score=27.06 Aligned_cols=11 Identities=36% Similarity=0.818 Sum_probs=8.5
Q ss_pred cCCCCHHHHHH
Q 047125 120 SFLSQPPFQEL 130 (166)
Q Consensus 120 ~yLnHPlFqeL 130 (166)
.|||||.|.-|
T Consensus 5 ~YLNHPtFGlL 15 (89)
T 2xko_C 5 NYLNHPTFGLL 15 (89)
T ss_dssp CEEEETTTEEE
T ss_pred ccccCCccchh
Confidence 58999998544
No 10
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=16.81 E-value=1.4e+02 Score=20.54 Aligned_cols=50 Identities=18% Similarity=0.243 Sum_probs=35.3
Q ss_pred EEEEEcCCCCceEEEEeccCC--CCHHHHHHHHhHHHhcCCcCCCCceEee--ccHHHHHHHHHhh
Q 047125 102 LEVEVGRPENQKLASTPVSFL--SQPPFQELLSKAEEEFGYNNPMGGLTIP--YREDIFINLTSGL 163 (166)
Q Consensus 102 faVYVG~e~e~rRFVVPv~yL--nHPlFqeLLeqAEEEfGf~~~~G~LtIP--Cdv~~FE~VL~~I 163 (166)
+.+.||+ ++|-+.=..| ..|.|++++... .. ..|.|| .+.+.|+.++..+
T Consensus 36 v~l~v~~----~~~~~Hk~vLaa~S~~F~~~f~~~-------~~-~~i~l~~~~~~~~f~~ll~~i 89 (129)
T 3ga1_A 36 VSVVVKG----HAFKAHRAVLAASSSYFRDLFNNS-------RS-AVVELPAAVQPQSFQQILSFC 89 (129)
T ss_dssp EEEEETT----EEEEECHHHHHHHBHHHHHHHHHC-------CC-SEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEECC----EEEEehHHHHHHcCHHHHHHHcCC-------CC-CEEEECCCCCHHHHHHHHHHH
Confidence 3455643 5666654444 368999998765 33 689996 8999999998865
Done!