BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047127
(322 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FFY6|ELCL_ARATH Protein ELC-like OS=Arabidopsis thaliana GN=ELCL PE=1 SV=1
Length = 368
Score = 193 bits (491), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 127/338 (37%), Positives = 184/338 (54%), Gaps = 43/338 (12%)
Query: 8 QFIDTALWCTTPFRLSYADPNQKWLIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKV 67
QF+ +AL P L YA+ N K LIR+ LL+L+ +Y S + TFTHNDG +V L +
Sbjct: 13 QFLSSALTQRGPSALPYAE-NTKSLIRQHLLNLISSYTSLDPKTATFTHNDGRSVILLQA 71
Query: 68 SGCF-----HVSQSTPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTIT 122
G VS + P +WL E+YP P ++ + M I++ H VSP G ++
Sbjct: 72 DGTIPMPFQGVSYNIP---VVIWLLESYPQYPPCVYVNPTRDMI-IKRPHSNVSPSGLVS 127
Query: 123 TPYLQTWSYPGYNLNDLVHNLVQIFSHDHPLIYYSTE---------SSFTR--------- 164
PYLQ W YP NL DL +L FS D PL S ++R
Sbjct: 128 LPYLQNWIYPSSNLVDLASHLSAAFSRDPPLYSQRRPPPQPSPSIGSGYSRPLPPRQTDD 187
Query: 165 TSLVSKREALDRFSGMLHYDMGALQARTEEETEALLTIQVELKNRARKL----KETVVE- 219
+ V K+ A++R M+H D+ +++ E ETE LL++Q +LK R ++ KE V+E
Sbjct: 188 AAEVYKKNAINRIVEMVHGDIVLMRSAREVETEGLLSLQSDLKRREEEINNGFKEMVIEK 247
Query: 220 ---------LAGKADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAADE 270
+A DVL +W++ N KA +++ V+D+FE ID+ SK LE +A D
Sbjct: 248 ETLEQQLQVIAMNTDVLGSWIRENQG-KAKDLLVDLDVDDSFECIDSLSKQMLECTALDL 306
Query: 271 AIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHR 308
AIEDV+Y++DK+ G + FD Y+R VR+L+REQFFHR
Sbjct: 307 AIEDVVYSMDKSFRDGSLPFDQYLRNVRLLSREQFFHR 344
>sp|Q9LHG8|ELC_ARATH Protein ELC OS=Arabidopsis thaliana GN=ELC PE=1 SV=1
Length = 398
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 129/374 (34%), Positives = 185/374 (49%), Gaps = 75/374 (20%)
Query: 3 PSSSIQFIDTALWCTTPFRLSYADPNQKWLIRKQLLSLLQNYPSFNLSNDTFTHNDGTAV 62
P QF+ +AL P + Y + N KWLIR+ LL+L+ +YPS +F HNDG +V
Sbjct: 8 PQQVQQFLSSALSQRGPSSVPYEESN-KWLIRQHLLNLISSYPSLEPKTASFMHNDGRSV 66
Query: 63 NLFKVSGC----FH-VSQSTPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSP 117
NL + G FH V+ + P I +WL E+YP P ++ + M I++ H V+P
Sbjct: 67 NLLQADGTIPMPFHGVTYNIPVI---IWLLESYPRHPPCVYVNPTADMI-IKRPHAHVTP 122
Query: 118 CGTITTPYLQTWSYPGYNLNDLVHNLVQIFSHDHPLIYYST------------ESSFTR- 164
G ++ PYLQ W YP NL DLV +L F+ D PL +SS +R
Sbjct: 123 SGLVSLPYLQNWVYPSSNLVDLVSDLSAAFARDPPLYSRRRPQPPPPSPPTVYDSSLSRP 182
Query: 165 ------------------------------------TSLVSKREALDRFSGMLHYDMGAL 188
+ V KR A+++ M+H D+ ++
Sbjct: 183 PSADQSLPRPFPPSPYGGGVSRVQVQHVHHQQQSDDAAEVFKRNAINKMVEMVHSDLVSM 242
Query: 189 QARTEEETEALLTIQVELKNRARK----LKETVVE----------LAGKADVLTNWLKVN 234
+ E E E LL++Q LK R + LKE V E ++ D+L +W++ N
Sbjct: 243 RRAREAEAEELLSLQAGLKRREDELNIGLKEMVEEKETLEQQLQIISMNTDILDSWVREN 302
Query: 235 GDPKAIGVILGDRVEDAFEAIDAESKAELEGSAADEAIEDVIYALDKALERGVVSFDSYI 294
K ++ D V++AFE D SK LE +A D AIED IY+LDK+ + GVV FD Y+
Sbjct: 303 QG-KTKNLVDLD-VDNAFECGDTLSKQMLECTALDLAIEDAIYSLDKSFQDGVVPFDQYL 360
Query: 295 RQVRILAREQFFHR 308
R VR+L+REQFFHR
Sbjct: 361 RNVRLLSREQFFHR 374
>sp|Q66KB7|UEVLD_XENTR Ubiquitin-conjugating enzyme E2 variant 3 OS=Xenopus tropicalis
GN=uevld PE=2 SV=1
Length = 476
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 4/140 (2%)
Query: 32 LIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVSQ--STPPIHFTLWLHEN 89
L ++L L + +PSF S +T+T DG+ +L ++G + +T I LW+ ++
Sbjct: 20 LTIEELKDLNRTFPSFIFSMETYTFRDGSQKDLLNLTGTVPMKHQGTTYNIPICLWILDS 79
Query: 90 YPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSH 149
+P P+ F+ S +M H + G I PYLQ WS+P + L+ + F
Sbjct: 80 HPFAPPLCFLKPSGNMGIRVGRH--IDAQGRIYLPYLQNWSHPKSTVTGLIREMAVKFEE 137
Query: 150 DHPLIYYSTESSFTRTSLVS 169
+ PL S E + L+S
Sbjct: 138 ELPLYSLSAEDGARQRELLS 157
>sp|Q99816|TS101_HUMAN Tumor susceptibility gene 101 protein OS=Homo sapiens GN=TSG101
PE=1 SV=2
Length = 390
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 17/168 (10%)
Query: 164 RTSLVSKREALDRFSGMLHYDMGALQARTEEETEALLTIQVELKNRARKLKETVVELAGK 223
R SL+S S L + M R + E AL + +LK +KL+E V L +
Sbjct: 227 RASLISA------VSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQE 280
Query: 224 -ADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAES---------KAELEGSAADEAIE 273
A+V N + + + L +++E+ E D + K L A + AIE
Sbjct: 281 VAEVDKNIELLKKKDEELSSAL-EKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIE 339
Query: 274 DVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLVKLEVKRGFT 321
D I+ L +AL RGV+ D +++ VR+L+R+QF R L+ K G +
Sbjct: 340 DTIFYLGEALRRGVIDLDVFLKHVRLLSRKQFQLRALMQKARKTAGLS 387
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 52 DTFTHNDGTAVNLFKVSGCFHVS--QSTPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIR 109
D++ NDG++ L ++G V +T I LWL + YP P+ F+ ++SM
Sbjct: 40 DSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKT 99
Query: 110 QNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSHDHPLIYYSTESSF 162
H V G I PYL W +P +L L+ ++ +F + P+ +S+
Sbjct: 100 GKH--VDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFSRPISASY 150
>sp|Q61187|TS101_MOUSE Tumor susceptibility gene 101 protein OS=Mus musculus GN=Tsg101
PE=1 SV=2
Length = 391
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 32 LIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS--QSTPPIHFTLWLHEN 89
L +Q ++++ Y D++ NDG++ L ++G V + I LWL +
Sbjct: 20 LTVRQTVNVIAMYKDLKPVLDSYVFNDGSSRELVNLTGTIPVRYRGNIYNIPICLWLLDT 79
Query: 90 YPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSH 149
YP P+ F+ ++SM H V G I PYL W +P L +L+ ++ IF
Sbjct: 80 YPYNPPICFVKPTSSMTIKTGKH--VDANGKIYLPYLHDWKHPRSELLELIQIMIVIFGE 137
Query: 150 DHPLIYYSTESS 161
+ P+ T S+
Sbjct: 138 EPPVFSRPTVSA 149
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 164 RTSLVSKREALDRFSGMLHYDMGALQARTEEETEALLTIQVELKNRARKLKETVVELAGK 223
R SL+S D+ + +M QA E AL + +LK +KL+E V L +
Sbjct: 228 RASLISA--VSDKLRWRMKEEMDGAQA----ELNALKRTEEDLKKGHQKLEEMVTRLDQE 281
Query: 224 -ADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAES---------KAELEGSAADEAIE 273
A+V N + + + L +++E+ E D + K L A + AIE
Sbjct: 282 VAEVDKNIELLKKKDEELSSAL-EKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIE 340
Query: 274 DVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLVKLEVKRGFT 321
D I+ L +AL RGV+ D +++ VR+L+R+QF R L+ K G +
Sbjct: 341 DTIFYLGEALRRGVIDLDVFLKHVRLLSRKQFQLRALMQKARKTAGLS 388
>sp|Q6IRE4|TS101_RAT Tumor susceptibility gene 101 protein OS=Rattus norvegicus
GN=Tsg101 PE=1 SV=1
Length = 391
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 32 LIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS--QSTPPIHFTLWLHEN 89
L +Q ++++ Y D++ NDG++ L ++G V + I LWL +
Sbjct: 20 LTVRQTVNVIAMYKDLKPVLDSYVFNDGSSRELVNLTGTIPVRYRGNIYNIPICLWLLDT 79
Query: 90 YPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSH 149
YP P+ F+ ++SM H V G I PYL W +P L +L+ ++ IF
Sbjct: 80 YPYNPPICFVKPTSSMTIKTGKH--VDANGKIYLPYLHDWKHPRSELLELIQIMIVIFGE 137
Query: 150 DHPLIYYSTESS 161
+ P+ T S+
Sbjct: 138 EPPVFSRPTVSA 149
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 164 RTSLVSKREALDRFSGMLHYDMGALQARTEEETEALLTIQVELKNRARKLKETVVELAGK 223
R SL+S D+ + +M QA E AL + +LK +KL+E V L +
Sbjct: 228 RASLISA--VSDKLRWRMKEEMDGAQA----ELNALKRTEEDLKKGHQKLEEMVTRLDQE 281
Query: 224 -ADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAES---------KAELEGSAADEAIE 273
A+V N + + + L +++E+ E D + K L A + AIE
Sbjct: 282 VAEVDKNIELLKKKDEELSSAL-EKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIE 340
Query: 274 DVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLVKLEVKRGFT 321
D I+ L +AL RGV+ D +++ VR+L+R+QF R L+ K G +
Sbjct: 341 DTIFYLGEALRRGVIDLDVFLKHVRLLSRKQFQLRALMQKARKTAGLS 388
>sp|Q8IX04|UEVLD_HUMAN Ubiquitin-conjugating enzyme E2 variant 3 OS=Homo sapiens GN=UEVLD
PE=1 SV=2
Length = 471
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 44 YPSFNLSNDTFTHNDGTAVNLFKVSGCFHV--SQSTPPIHFTLWLHENYPSMAPMAFIVS 101
+P F S DT+ D + +L +G V +T I W+ +++P P+ F+
Sbjct: 32 FPHFKYSMDTYVFKDSSQKDLLNFTGTIPVMYQGNTYNIPIRFWILDSHPFAPPICFLKP 91
Query: 102 SNSMYPIRQNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSHDHPLIYYSTESS 161
+ +M + H V G I PYLQ WS+P + L+ ++ F + P+ YS SS
Sbjct: 92 TANMGILVGKH--VDAQGRIYLPYLQNWSHPKSVIVGLIKEMIAKFQEELPM--YSLSSS 147
>sp|Q3U1V6|UEVLD_MOUSE Ubiquitin-conjugating enzyme E2 variant 3 OS=Mus musculus GN=Uevld
PE=2 SV=1
Length = 471
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 6/132 (4%)
Query: 32 LIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHV--SQSTPPIHFTLWLHEN 89
L ++L ++ ++P F S DT+ D + +L +G V T I W+ ++
Sbjct: 20 LTVEELKNVSVSFPHFRYSVDTYVFKDTSQKDLLNFTGTIPVMYQGKTYNIPIRFWILDS 79
Query: 90 YPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSH 149
+P P+ F+ + +M H V G I PYLQ WS+P + L+ ++ F
Sbjct: 80 HPFAPPICFLKPTANMEISVGKH--VDAKGRIYLPYLQNWSHPKSAIVGLIKEMIAKFQE 137
Query: 150 DHPLIYYSTESS 161
+ PL YS SS
Sbjct: 138 ELPL--YSIPSS 147
>sp|Q54LJ3|TS101_DICDI ESCRT-I complex subunit tsg101 OS=Dictyostelium discoideum
GN=tsg101 PE=3 SV=1
Length = 478
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 219 ELAGKADVLTNWLKVNGDPKA---IGVILGDRVEDAFEAIDAESKAELEGSAADEAIEDV 275
+L + L W+ N + I ILG + D+ SK L+ + D IED+
Sbjct: 354 QLNENIEQLEKWINENDKSDSNIDIDQILGPK--------DSLSKQLLKLVSDDSTIEDL 405
Query: 276 IYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLVKLE 315
+Y LDKAL +S + Y++ VR L+R+QF R + K++
Sbjct: 406 LYYLDKALHSNRISLEEYLKNVRSLSRDQFIIRATVKKVQ 445
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 47/112 (41%), Gaps = 14/112 (12%)
Query: 23 SYADPNQKWLIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSG----CFHVSQSTP 78
+Y DP I K L +P NLS F N VNL + G CF
Sbjct: 40 AYRDP---LRISKDLKETFHLFP--NLS--PFYENIPNRVNLICIKGTIPICFKGINYYL 92
Query: 79 PIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWS 130
PI +W+ NYP P + + M I +NH V+ G + PY+ +WS
Sbjct: 93 PI--IVWVPLNYPQEFPTMVLDPTPEMR-IVKNHHHVNLQGLVYHPYISSWS 141
>sp|Q6DBY5|UEVLD_DANRE Ubiquitin-conjugating enzyme E2 variant 3 OS=Danio rerio GN=uevld
PE=2 SV=1
Length = 471
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 4/136 (2%)
Query: 35 KQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHV--SQSTPPIHFTLWLHENYPS 92
++L + + YP + T+T +D +L K+ G V + I LWL +++P
Sbjct: 23 EELQKVYRVYPDMKIMAGTYTSSDSLQKDLLKLVGNIPVVYQGRSYNIPILLWLLDSFPF 82
Query: 93 MAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSHDHP 152
P+ ++ ++SM IR+ V G I P L W +P ++N L+ ++ F + P
Sbjct: 83 TPPICYLRPTSSMV-IREGK-HVDSKGRIHLPALHNWDHPKSSVNALLAEMIGKFEEEPP 140
Query: 153 LIYYSTESSFTRTSLV 168
L S+ T ++L+
Sbjct: 141 LGTKSSAHGDTPSNLL 156
>sp|P25604|STP22_YEAST Suppressor protein STP22 of temperature-sensitive alpha-factor
receptor and arginine permease OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=STP22 PE=1
SV=3
Length = 385
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 28/159 (17%)
Query: 154 IYYSTESSFTRTSLVSKREALDRFSGMLHYDMGALQARTE--EETEALLTIQVEL--KNR 209
+ Y + TR +++ +E++ RF ++ D L+A + E+T L Q+++ NR
Sbjct: 240 VDYVADKILTRQTVM--QESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANR 297
Query: 210 ARKLKETVVELAGKADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAAD 269
A+ + + DV +I V D + + + A D
Sbjct: 298 AKVQQFSSTSHVDDEDV-----------NSIAVAKTDGLNQLYNLV-----------AQD 335
Query: 270 EAIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHR 308
A+ D I L + L RG + D++++Q R LAR+QF R
Sbjct: 336 YALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQFLVR 374
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 52/125 (41%), Gaps = 14/125 (11%)
Query: 38 LSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVSQ--STP-PIHFTLWLHENYPSMA 94
L+LL N+ S FTH+DGT L + G + S+P I +W+ YP
Sbjct: 36 LALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKP 95
Query: 95 PMAFIVSSN-------SMYPIRQNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIF 147
P I N S PI++ ++ G I P L W NL +V L+ +
Sbjct: 96 PFISINLENFDMNTISSSLPIQE---YIDSNGWIALPILHCWDPAAMNLIMVVQELMSLL 152
Query: 148 SHDHP 152
H+ P
Sbjct: 153 -HEPP 156
>sp|Q7Z992|SST6_SCHPO ESCRT-I complex subunit vps23 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sst6 PE=3 SV=2
Length = 487
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 18/89 (20%)
Query: 243 ILGDRVEDAFEAIDA---------------ESKAEL---EGSAADEAIEDVIYALDKALE 284
ILG R A EA+ S+ EL E DE +++ I AL++AL
Sbjct: 397 ILGKRRRKAREALQKLDNLKDLSVQELFIIPSERELKYYELKRKDEKLDEGIRALNQALH 456
Query: 285 RGVVSFDSYIRQVRILAREQFFHRDLLVK 313
+ S+++ +++LAR+QF RD +++
Sbjct: 457 HESIMPASWLKGIKLLARQQFLIRDEMLQ 485
>sp|Q8SS35|Y4A0_ENCCU Probable myosin havy chain ECU04_1000 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=ECU04_1000 PE=1 SV=1
Length = 1700
Score = 34.7 bits (78), Expect = 0.86, Method: Composition-based stats.
Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 14/155 (9%)
Query: 164 RTSLVSKREALDRFSGMLHYDMGALQARTEEETEALLTIQVELKNRARKLKETVVELAGK 223
RT ++ + D ++ L D ALQ + ++E E + L N RK+ + EL
Sbjct: 1047 RTRCLNMKRWKDEYA-ELREDYEALQKKLKDEVEDMQVENDRLHNEIRKISKEREELGRM 1105
Query: 224 ADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAADE-----AIEDVIYA 278
L + L+ + G ++E AF+ + E +A +EG E + ++ +
Sbjct: 1106 QKKLLDDLEFERNR-------GSKLEKAFQELRGEYEA-VEGQLQKERQFRDSTQESLLE 1157
Query: 279 LDKALERGVVSFDSYIRQVRILAREQFFHRDLLVK 313
+ LER V S + +R+ + R+ +D + +
Sbjct: 1158 KTRGLERRVKSLNEKLRREEMANRQLMSEKDEMYR 1192
>sp|B0VD55|HSCA_ACIBY Chaperone protein HscA homolog OS=Acinetobacter baumannii (strain
AYE) GN=hscA PE=3 SV=1
Length = 619
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 54/116 (46%), Gaps = 14/116 (12%)
Query: 168 VSKREALDRFSGM-LHYDMGALQARTEEETEALLT---IQVELKNRARKLKETVVELAGK 223
VS REA SG+ H D+ +E +TE LL E R LKET VE +
Sbjct: 482 VSAREAT---SGVQAHIDIKPSYGLSEADTERLLIEGFQHAEEDKNLRHLKETKVEAERE 538
Query: 224 ADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAADEAIEDVIYAL 279
+ L LKV+ D +L ++ DA + KA+LEGS +AIE + L
Sbjct: 539 LESLEQALKVDAD------LLDEKQLDALNSAKESLKAQLEGSDI-QAIEHAVQQL 587
>sp|B7I5P9|HSCA_ACIB5 Chaperone protein HscA homolog OS=Acinetobacter baumannii (strain
AB0057) GN=hscA PE=3 SV=1
Length = 619
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 54/116 (46%), Gaps = 14/116 (12%)
Query: 168 VSKREALDRFSGM-LHYDMGALQARTEEETEALLT---IQVELKNRARKLKETVVELAGK 223
VS REA SG+ H D+ +E +TE LL E R LKET VE +
Sbjct: 482 VSAREAT---SGVQAHIDIKPSYGLSEADTERLLIEGFQHAEEDKNLRHLKETKVEAERE 538
Query: 224 ADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAADEAIEDVIYAL 279
+ L LKV+ D +L ++ DA + KA+LEGS +AIE + L
Sbjct: 539 LESLEQALKVDAD------LLDEKQLDALNSAKESLKAQLEGSDI-QAIEHAVQQL 587
>sp|B7H3H4|HSCA_ACIB3 Chaperone protein HscA homolog OS=Acinetobacter baumannii (strain
AB307-0294) GN=hscA PE=3 SV=1
Length = 619
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 54/116 (46%), Gaps = 14/116 (12%)
Query: 168 VSKREALDRFSGM-LHYDMGALQARTEEETEALLT---IQVELKNRARKLKETVVELAGK 223
VS REA SG+ H D+ +E +TE LL E R LKET VE +
Sbjct: 482 VSAREAT---SGVQAHIDIKPSYGLSEADTERLLIEGFQHAEEDKNLRHLKETKVEAERE 538
Query: 224 ADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAADEAIEDVIYAL 279
+ L LKV+ D +L ++ DA + KA+LEGS +AIE + L
Sbjct: 539 LESLEQALKVDAD------LLDEKQLDALNSAKESLKAQLEGSDI-QAIEHAVQQL 587
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 26/135 (19%)
Query: 148 SHDHPLIYYSTESSFTRTSLVSKREALDRFSGMLHYD----MGALQARTEEETE----AL 199
S + +++ T+ + R A+D+ +GML D +G ++R E E E A
Sbjct: 137 SKGYGFVHFETQEAAER--------AIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 188
Query: 200 LTIQVELKNRARKLK-ETVVELAGK------ADVLTNWLKVNGDPKAIGVILGDRVEDAF 252
V +KN + E + E+ GK V+T+ NG K G + +R EDA
Sbjct: 189 EFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD---NGKSKGFGFVSFERHEDAQ 245
Query: 253 EAIDAESKAELEGSA 267
+A+D + ++ G +
Sbjct: 246 KAVDEMNGKDMNGKS 260
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 26/133 (19%)
Query: 148 SHDHPLIYYSTESSFTRTSLVSKREALDRFSGMLHYD----MGALQARTEEETE----AL 199
S + +++ T+ + R A+++ +GML D +G ++R E E E A
Sbjct: 137 SKGYGFVHFETQEAAER--------AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 188
Query: 200 LTIQVELKNRARKLK-ETVVELAGK------ADVLTNWLKVNGDPKAIGVILGDRVEDAF 252
V +KN + E + EL GK V+T+ +G K G + +R EDA
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE---SGKSKGFGFVSFERHEDAQ 245
Query: 253 EAIDAESKAELEG 265
+A+D + EL G
Sbjct: 246 KAVDEMNGKELNG 258
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 26/133 (19%)
Query: 148 SHDHPLIYYSTESSFTRTSLVSKREALDRFSGMLHYD----MGALQARTEEETE----AL 199
S + +++ T+ + R A+++ +GML D +G ++R E E E A
Sbjct: 137 SKGYGFVHFETQEAAER--------AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 188
Query: 200 LTIQVELKNRARKLK-ETVVELAGK------ADVLTNWLKVNGDPKAIGVILGDRVEDAF 252
V +KN + E + EL GK V+T+ +G K G + +R EDA
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE---SGKSKGFGFVSFERHEDAQ 245
Query: 253 EAIDAESKAELEG 265
+A+D + EL G
Sbjct: 246 KAVDEMNGKELNG 258
>sp|Q07DZ5|CTTB2_ORNAN Cortactin-binding protein 2 OS=Ornithorhynchus anatinus GN=CTTNBP2
PE=3 SV=1
Length = 1635
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 245 GDRVEDAFEAIDAESK--AELEGSAADEAIEDVIYALDKALERGVVSFDSYIRQVRI-LA 301
G+++E+A +DAE + ELEG+ + E + ++ +E+ + FD+ Q+R L+
Sbjct: 186 GEKLEEAASKLDAEKRKTGELEGALSAERQKS--SQMEARMEKQLSEFDTEREQLRAKLS 243
Query: 302 REQFFHRDLLVKLEVKR 318
RE+ DL +++ R
Sbjct: 244 REEALTADLREEIDKMR 260
>sp|Q9HBU1|BARX1_HUMAN Homeobox protein BarH-like 1 OS=Homo sapiens GN=BARX1 PE=1 SV=2
Length = 254
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 195 ETEALLTIQVEL--KNRARKLKETVVELAGKADVLTNWLKVNGDPKAIGVILGDRVEDAF 252
E+ L +QV+ +NR K K+ V++ G L + K G PK + +++ +
Sbjct: 177 ESLGLSQLQVKTWYQNRRMKWKKIVLQGGG----LESPTKPKGRPKKNSIPTSEQLTEQE 232
Query: 253 EAIDAESKAELEGSAADEAIED 274
A DAE AE+ G +D + ED
Sbjct: 233 RAKDAEKPAEVPGEPSDRSRED 254
>sp|C3L0J1|Y2720_CLOB6 UPF0348 protein CLJ_B2720 OS=Clostridium botulinum (strain 657 /
Type Ba4) GN=CLJ_B2720 PE=3 SV=1
Length = 409
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 48/112 (42%), Gaps = 13/112 (11%)
Query: 140 VHNLVQIFSHDHPLIYYSTESSFTRTSLV----SKREALDR--------FSGMLHYDMGA 187
+HNL+ + IY S E +FT SLV SKR A R F G +YD+ +
Sbjct: 270 LHNLIDVSEGLDNRIYKSLEKNFTYDSLVGEIKSKRYAYSRIGRILCQYFIGFENYDLNS 329
Query: 188 LQARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDPKA 239
L T L + + LK + K + + K TN L +N D KA
Sbjct: 330 LLKSTPNYMRVLASNEAGLKVLKKIKKHSSTNIYTKVPKNTNTL-LNLDIKA 380
>sp|A4J4E2|ADDB_DESRM ATP-dependent helicase/deoxyribonuclease subunit B
OS=Desulfotomaculum reducens (strain MI-1) GN=addB PE=3
SV=1
Length = 1155
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 24/117 (20%)
Query: 132 PGYNLNDLVHNL-VQIFSHDHPLIYYSTESSFTRTSLVSKREALDRFSGMLHYDM----- 185
P L D+VH L +Q+ ++ + YS + ++++EAL + ML++ +
Sbjct: 958 PDIKLADIVHGLKLQLLTYLDVALRYSKQ--------LTQQEALP--AAMLYFSVRDPFV 1007
Query: 186 GALQARTEEETEALLTIQVELKNRARKLKETVV------ELAGKADVLTNWLKVNGD 236
+ TEEE E L Q+++K L + +V EL+G++D+L LK NGD
Sbjct: 1008 ASTGPMTEEEAEKNLLKQLKMKGLL--LADPLVISKMDKELSGQSDLLPVGLKKNGD 1062
>sp|A7F8K7|EIF3D_SCLS1 Eukaryotic translation initiation factor 3 subunit D OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)
GN=SS1G_13938 PE=3 SV=1
Length = 577
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 13/145 (8%)
Query: 108 IRQNHPFVSPCGTITTPYLQTWSYPGYNLN----DLVHNLVQIFSHDHPLIYYSTESSFT 163
+ +PF +P P + + Y ++L+ D VH +V+ I ++++ +
Sbjct: 362 MEHENPFYNPSEETDPPASKAYKYRKFDLSLNDEDPVHLVVRT------EIDAVSKNAIS 415
Query: 164 RTSLVSKREALDRFSGMLHYDMGALQARTEEETEALLTIQVELKNRARKLKE-TVVELAG 222
+AL+ F GAL RT+ ++ + E+KN + KL TV +
Sbjct: 416 GEDQYLTVKALNEFDSKAQGSGGALDWRTKLVSQRGAVVATEMKNNSCKLARWTVQSIIA 475
Query: 223 KADVLTNWLKVNGDPKAIG--VILG 245
KADV+ +PK VILG
Sbjct: 476 KADVMKLGFVSRANPKLNDRHVILG 500
>sp|B1KX40|Y1872_CLOBM UPF0348 protein CLK_1872 OS=Clostridium botulinum (strain Loch
Maree / Type A3) GN=CLK_1872 PE=3 SV=1
Length = 409
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 13/112 (11%)
Query: 140 VHNLVQIFSHDHPLIYYSTESSFTRTSLV----SKREALDR--------FSGMLHYDMGA 187
+HNL+ + IY S E +FT SLV SKR A R F G +YD+ +
Sbjct: 270 LHNLIDVSEGLDNRIYKSLEKNFTYDSLVGEIKSKRYAYSRIGRILCQYFIGFENYDLNS 329
Query: 188 LQARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDPKA 239
L T L + ++ LK + + + + K TN L +N D KA
Sbjct: 330 LLKSTPNYMRVLASNEIGLKVLKKIKRHSSTNIYTKIPKNTNTL-LNLDIKA 380
>sp|C1FSR0|Y2790_CLOBJ UPF0348 protein CLM_2790 OS=Clostridium botulinum (strain Kyoto /
Type A2) GN=CLM_2790 PE=3 SV=1
Length = 409
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 12/104 (11%)
Query: 140 VHNLVQIFSHDHPLIYYSTESSFTRTSLV----SKREALDR--------FSGMLHYDMGA 187
+HNL+ + IY S E +FT SLV SKR A R F G +YD+ +
Sbjct: 270 LHNLIDVSEGLDNRIYKSLEKNFTYDSLVGEIKSKRYAYSRIGRILCQYFIGFENYDLNS 329
Query: 188 LQARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWL 231
L T L + ++ LK + K + + + K TN L
Sbjct: 330 LLKSTPNYMRVLASNEMGLKVLKKIKKHSSINIYTKLPKNTNTL 373
>sp|P15590|GLB1_MAIZE Globulin-1 S allele OS=Zea mays GN=GLB1 PE=1 SV=2
Length = 573
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 26/111 (23%)
Query: 106 YPIRQNHPFVSPCGTIT-------------TPYLQTWSYPGYNLNDLVHNLVQIF---SH 149
Y I+Q H FV+P G +T T L T S PG Q F
Sbjct: 185 YTIKQGHVFVAPAGAVTYLANTDGRKKLVITKILHTISVPGE---------FQFFFGPGG 235
Query: 150 DHPLIYYSTES-SFTRTSLVSKREALDRFSGMLHYDMGALQARTEEETEAL 199
+P + S+ S S R + + + L+R G D G + TEE+T L
Sbjct: 236 RNPESFLSSFSKSIQRAAYKTSSDRLERLFGRHGQDKGIIVRATEEQTREL 286
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 26/133 (19%)
Query: 148 SHDHPLIYYSTESSFTRTSLVSKREALDRFSGMLHYD----MGALQARTEEETE----AL 199
S + +++ T+ + R A+++ +GML D +G ++R E E E A
Sbjct: 137 SKGYGFVHFETQEAAER--------AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 188
Query: 200 LTIQVELKNRARKLK-ETVVELAGK------ADVLTNWLKVNGDPKAIGVILGDRVEDAF 252
V +KN + E + +L GK V+T+ +G K G + +R EDA
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE---SGKSKGFGFVSFERHEDAQ 245
Query: 253 EAIDAESKAELEG 265
+A+D + EL G
Sbjct: 246 KAVDEMNGKELNG 258
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 26/133 (19%)
Query: 148 SHDHPLIYYSTESSFTRTSLVSKREALDRFSGMLHYD----MGALQARTEEETE----AL 199
S + +++ T+ + R A+++ +GML D +G ++R E E E A
Sbjct: 137 SKGYGFVHFETQEAAER--------AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 188
Query: 200 LTIQVELKNRARKLK-ETVVELAGK------ADVLTNWLKVNGDPKAIGVILGDRVEDAF 252
V +KN + E + +L GK V+T+ +G K G + +R EDA
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE---SGKSKGFGFVSFERHEDAQ 245
Query: 253 EAIDAESKAELEG 265
+A+D + EL G
Sbjct: 246 KAVDEMNGKELNG 258
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 26/133 (19%)
Query: 148 SHDHPLIYYSTESSFTRTSLVSKREALDRFSGMLHYD----MGALQARTEEETE----AL 199
S + +++ T+ + R A+++ +GML D +G ++R E E E A
Sbjct: 137 SKGYGFVHFETQEAAER--------AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 188
Query: 200 LTIQVELKNRARKLK-ETVVELAGK------ADVLTNWLKVNGDPKAIGVILGDRVEDAF 252
V +KN + E + +L GK V+T+ +G K G + +R EDA
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE---SGKSKGFGFVSFERHEDAQ 245
Query: 253 EAIDAESKAELEG 265
+A+D + EL G
Sbjct: 246 KAVDEMNGKELNG 258
>sp|Q62839|GOGA2_RAT Golgin subfamily A member 2 OS=Rattus norvegicus GN=Golga2 PE=1
SV=3
Length = 998
Score = 32.0 bits (71), Expect = 7.1, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 181 LHYDMGALQARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDPKAI 240
LH M LQ+R E ++ +VELK R +L+ ++L+G+ D + ++ + + +A+
Sbjct: 797 LHVAMEKLQSRFLE----VMQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAV 852
>sp|A5I4R8|Y2491_CLOBH UPF0348 protein CBO2491/CLC_2345 OS=Clostridium botulinum (strain
Hall / ATCC 3502 / NCTC 13319 / Type A) GN=CBO2491 PE=3
SV=1
Length = 409
Score = 31.2 bits (69), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Query: 140 VHNLVQIFSHDHPLIYYSTESSFTRTSLV----SKREALDR--------FSGMLHYDMGA 187
+HNL+ + IY S E +FT SLV SKR A R F G +YD+ +
Sbjct: 270 LHNLIDVSEGLDNRIYKSLEKNFTYDSLVGEIKSKRYAYSRIGRILCQYFIGFENYDLNS 329
Query: 188 LQARTEEETEALLTIQVELK 207
L T L + ++ LK
Sbjct: 330 LLKSTPNYMRVLASNEMGLK 349
>sp|A7FW56|Y2363_CLOB1 UPF0348 protein CLB_2363 OS=Clostridium botulinum (strain ATCC
19397 / Type A) GN=CLB_2363 PE=3 SV=1
Length = 409
Score = 31.2 bits (69), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Query: 140 VHNLVQIFSHDHPLIYYSTESSFTRTSLV----SKREALDR--------FSGMLHYDMGA 187
+HNL+ + IY S E +FT SLV SKR A R F G +YD+ +
Sbjct: 270 LHNLIDVSEGLDNRIYKSLEKNFTYDSLVGEIKSKRYAYSRIGRILCQYFIGFENYDLNS 329
Query: 188 LQARTEEETEALLTIQVELK 207
L T L + ++ LK
Sbjct: 330 LLKSTPNYMRVLASNEMGLK 349
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,202,645
Number of Sequences: 539616
Number of extensions: 4627818
Number of successful extensions: 14447
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 14409
Number of HSP's gapped (non-prelim): 69
length of query: 322
length of database: 191,569,459
effective HSP length: 117
effective length of query: 205
effective length of database: 128,434,387
effective search space: 26329049335
effective search space used: 26329049335
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)