Query 047127
Match_columns 322
No_of_seqs 143 out of 293
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:54:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047127.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047127hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2391 Vacuolar sorting prote 100.0 7.3E-79 1.6E-83 567.3 28.0 303 5-321 2-364 (365)
2 PF05743 UEV: UEV domain; Int 100.0 1.2E-43 2.6E-48 295.1 10.4 119 33-153 1-121 (121)
3 PF09454 Vps23_core: Vps23 cor 100.0 3.2E-29 6.8E-34 186.0 9.0 65 249-313 1-65 (65)
4 smart00212 UBCc Ubiquitin-conj 99.1 1.1E-09 2.3E-14 93.6 11.3 100 34-149 4-111 (145)
5 cd00195 UBCc Ubiquitin-conjuga 98.9 2.4E-08 5.1E-13 84.9 11.3 101 33-148 4-110 (141)
6 PTZ00390 ubiquitin-conjugating 98.7 1.4E-07 3E-12 81.6 11.8 102 33-149 7-113 (152)
7 PLN00172 ubiquitin conjugating 98.7 2.5E-07 5.4E-12 79.6 11.5 102 33-149 6-112 (147)
8 COG5078 Ubiquitin-protein liga 98.6 2.4E-07 5.1E-12 80.0 10.5 103 33-149 10-117 (153)
9 PF00179 UQ_con: Ubiquitin-con 98.5 5E-07 1.1E-11 76.6 9.3 78 63-148 26-109 (140)
10 KOG0421 Ubiquitin-protein liga 98.4 1.6E-06 3.4E-11 73.1 9.2 98 34-149 35-140 (175)
11 KOG0422 Ubiquitin-protein liga 98.4 2E-06 4.4E-11 72.2 8.7 80 62-149 30-114 (153)
12 KOG0424 Ubiquitin-protein liga 98.4 1.7E-06 3.6E-11 73.1 8.0 87 54-149 29-122 (158)
13 KOG0417 Ubiquitin-protein liga 98.2 4.9E-06 1.1E-10 70.9 7.9 80 63-150 29-113 (148)
14 KOG0419 Ubiquitin-protein liga 98.1 1.5E-05 3.2E-10 66.5 7.9 79 62-150 31-116 (152)
15 KOG0420 Ubiquitin-protein liga 97.6 0.0002 4.4E-09 62.3 7.3 77 66-150 61-141 (184)
16 KOG0418 Ubiquitin-protein liga 97.4 0.00031 6.7E-09 62.0 6.1 82 63-152 34-121 (200)
17 KOG0416 Ubiquitin-protein liga 97.2 0.0015 3.4E-08 56.8 8.1 97 33-146 8-109 (189)
18 PF14461 Prok-E2_B: Prokaryoti 97.2 0.0012 2.5E-08 55.8 7.0 78 64-148 24-105 (133)
19 KOG0895 Ubiquitin-conjugating 96.6 0.0041 8.9E-08 67.3 6.8 72 80-156 900-978 (1101)
20 KOG0427 Ubiquitin conjugating 96.3 0.011 2.3E-07 49.5 6.1 65 75-148 60-125 (161)
21 KOG0425 Ubiquitin-protein liga 95.7 0.023 4.9E-07 49.1 5.3 75 63-147 34-128 (171)
22 KOG0426 Ubiquitin-protein liga 93.6 0.28 6E-06 41.2 6.8 60 62-128 32-95 (165)
23 KOG0895 Ubiquitin-conjugating 88.2 1 2.2E-05 49.5 6.3 73 80-156 331-411 (1101)
24 KOG0423 Ubiquitin-protein liga 88.2 0.43 9.4E-06 41.9 2.9 53 80-140 59-112 (223)
25 PF07200 Mod_r: Modifier of ru 87.9 4.4 9.5E-05 34.4 9.0 44 257-303 96-139 (150)
26 KOG0429 Ubiquitin-conjugating 87.5 2 4.4E-05 39.3 6.8 86 52-149 38-133 (258)
27 KOG2391 Vacuolar sorting prote 87.4 4.6 9.9E-05 39.3 9.5 57 183-239 214-270 (365)
28 KOG0896 Ubiquitin-conjugating 85.2 4.6 0.0001 34.2 7.3 92 44-145 18-119 (138)
29 KOG0897 Predicted ubiquitin-co 81.4 2.1 4.6E-05 35.3 3.7 61 77-144 10-72 (122)
30 KOG0894 Ubiquitin-protein liga 79.6 5.8 0.00013 36.3 6.3 77 58-145 32-117 (244)
31 smart00591 RWD domain in RING 73.8 4 8.7E-05 31.9 3.4 22 79-100 42-63 (107)
32 PF05773 RWD: RWD domain; Int 73.4 19 0.00041 28.2 7.3 25 76-100 47-71 (113)
33 PF11932 DUF3450: Protein of u 72.4 19 0.00041 33.4 8.0 16 276-291 133-148 (251)
34 PF09304 Cortex-I_coil: Cortex 71.9 13 0.00028 30.3 5.8 50 188-237 17-66 (107)
35 PF08044 DUF1707: Domain of un 70.7 7.5 0.00016 27.6 3.8 33 269-301 5-37 (53)
36 PF15290 Syntaphilin: Golgi-lo 70.1 29 0.00064 33.0 8.6 21 167-187 63-83 (305)
37 PF09851 SHOCT: Short C-termin 69.7 11 0.00024 23.6 4.1 29 272-300 1-29 (31)
38 PF14462 Prok-E2_E: Prokaryoti 69.7 17 0.00038 30.3 6.3 83 63-149 25-121 (122)
39 PF10046 BLOC1_2: Biogenesis o 68.8 46 0.001 26.4 8.5 48 191-238 46-96 (99)
40 PF12174 RST: RCD1-SRO-TAF4 (R 67.8 21 0.00046 26.8 5.9 41 273-314 27-67 (70)
41 KOG4571 Activating transcripti 66.1 54 0.0012 31.4 9.5 48 187-234 241-288 (294)
42 COG1579 Zn-ribbon protein, pos 66.1 78 0.0017 29.5 10.5 53 257-309 107-166 (239)
43 PF04912 Dynamitin: Dynamitin 64.1 41 0.00088 33.3 8.9 39 201-239 347-385 (388)
44 PF13041 PPR_2: PPR repeat fam 61.1 30 0.00065 23.2 5.3 49 254-302 1-50 (50)
45 PF07889 DUF1664: Protein of u 58.4 1.1E+02 0.0024 25.7 9.9 9 225-233 106-114 (126)
46 KOG4571 Activating transcripti 56.9 63 0.0014 30.9 8.3 48 178-225 239-286 (294)
47 COG1463 Ttg2C ABC-type transpo 55.5 41 0.00089 32.9 7.2 79 191-269 184-262 (359)
48 PF09731 Mitofilin: Mitochondr 55.1 2.6E+02 0.0057 29.0 14.4 35 269-303 407-445 (582)
49 smart00502 BBC B-Box C-termina 53.7 1.1E+02 0.0023 24.1 10.8 41 257-299 76-116 (127)
50 PF02563 Poly_export: Polysacc 53.4 14 0.00031 28.1 2.9 37 113-149 33-69 (82)
51 KOG0428 Non-canonical ubiquiti 52.5 13 0.00029 34.6 2.9 97 40-145 16-118 (314)
52 PF10046 BLOC1_2: Biogenesis o 51.2 1.2E+02 0.0026 24.0 10.9 44 189-232 16-59 (99)
53 TIGR00996 Mtu_fam_mce virulenc 51.0 73 0.0016 29.8 7.9 15 79-93 70-84 (291)
54 PF11932 DUF3450: Protein of u 50.1 95 0.0021 28.7 8.4 34 194-227 42-75 (251)
55 PF11887 DUF3407: Protein of u 49.8 60 0.0013 30.5 7.0 23 247-269 95-117 (267)
56 PF04899 MbeD_MobD: MbeD/MobD 48.4 1.2E+02 0.0025 22.9 7.9 23 210-232 44-66 (70)
57 PRK13729 conjugal transfer pil 48.2 1.3E+02 0.0029 30.8 9.5 48 189-236 78-125 (475)
58 PF06785 UPF0242: Uncharacteri 48.1 1.8E+02 0.0039 28.6 9.9 26 259-286 198-224 (401)
59 PF07877 DUF1661: Protein of u 47.9 13 0.00029 23.5 1.5 18 300-317 1-18 (31)
60 PF06005 DUF904: Protein of un 46.4 1.3E+02 0.0027 22.7 10.1 49 173-222 5-53 (72)
61 PF14389 Lzipper-MIP1: Leucine 46.3 96 0.0021 24.2 6.6 28 256-283 50-77 (88)
62 KOG0994 Extracellular matrix g 46.3 2.1E+02 0.0045 32.9 11.0 47 271-317 1560-1606(1758)
63 PF13863 DUF4200: Domain of un 45.6 1.1E+02 0.0023 24.8 7.2 98 202-303 26-123 (126)
64 KOG0971 Microtubule-associated 45.0 99 0.0021 34.3 8.3 54 179-232 378-441 (1243)
65 PRK10884 SH3 domain-containing 45.0 77 0.0017 28.8 6.7 6 75-80 41-46 (206)
66 PF12718 Tropomyosin_1: Tropom 44.9 1.4E+02 0.0031 25.3 8.0 23 281-303 101-123 (143)
67 PF07106 TBPIP: Tat binding pr 44.5 1.6E+02 0.0035 25.3 8.5 26 211-236 112-137 (169)
68 PF12329 TMF_DNA_bd: TATA elem 43.8 73 0.0016 24.0 5.4 47 189-235 14-60 (74)
69 PF13556 HTH_30: PucR C-termin 43.6 22 0.00047 25.3 2.4 33 289-321 4-43 (59)
70 cd00890 Prefoldin Prefoldin is 42.5 36 0.00077 27.6 3.8 40 270-309 83-122 (129)
71 COG3096 MukB Uncharacterized p 42.4 5.1E+02 0.011 28.6 13.6 125 177-311 985-1110(1480)
72 PF10779 XhlA: Haemolysin XhlA 42.0 1.4E+02 0.0031 22.1 7.4 21 206-226 25-45 (71)
73 PF09824 ArsR: ArsR transcript 41.5 36 0.00078 29.7 3.7 63 251-316 85-147 (160)
74 COG4026 Uncharacterized protei 41.2 2.4E+02 0.0052 26.3 9.1 16 75-90 32-47 (290)
75 PF04111 APG6: Autophagy prote 40.4 1.5E+02 0.0032 28.7 8.2 31 255-285 101-131 (314)
76 PF02183 HALZ: Homeobox associ 40.3 1.2E+02 0.0026 20.7 5.7 39 193-231 4-42 (45)
77 PRK00888 ftsB cell division pr 40.2 1.3E+02 0.0028 24.2 6.7 42 191-232 31-72 (105)
78 PF06160 EzrA: Septation ring 39.9 4.1E+02 0.0089 27.7 12.0 84 203-301 395-478 (560)
79 PF03954 Lectin_N: Hepatic lec 38.9 1.5E+02 0.0033 25.3 7.0 44 182-225 68-115 (138)
80 KOG3647 Predicted coiled-coil 38.3 2.4E+02 0.0052 27.0 8.8 46 177-222 106-151 (338)
81 PF14457 Prok-E2_A: Prokaryoti 38.2 50 0.0011 28.8 4.2 66 78-148 53-125 (162)
82 PF06113 BRE: Brain and reprod 37.8 75 0.0016 31.1 5.7 68 67-147 56-124 (333)
83 PF10234 Cluap1: Clusterin-ass 37.8 2.5E+02 0.0055 26.6 9.1 20 134-153 127-146 (267)
84 TIGR00996 Mtu_fam_mce virulenc 37.7 1.9E+02 0.0041 27.0 8.4 23 281-303 248-270 (291)
85 PF07926 TPR_MLP1_2: TPR/MLP1/ 37.5 1.7E+02 0.0038 24.2 7.3 13 250-262 116-128 (132)
86 PRK04778 septation ring format 37.5 3.7E+02 0.0079 28.1 11.2 24 271-294 452-475 (569)
87 PLN03083 E3 UFM1-protein ligas 37.4 6E+02 0.013 28.0 13.4 31 272-304 641-671 (803)
88 KOG0976 Rho/Rac1-interacting s 37.2 5.1E+02 0.011 28.8 11.9 51 257-307 180-245 (1265)
89 COG3883 Uncharacterized protei 37.1 2E+02 0.0043 27.3 8.2 41 190-230 55-95 (265)
90 KOG1830 Wiskott Aldrich syndro 36.0 98 0.0021 31.3 6.2 74 205-278 54-127 (518)
91 PRK09039 hypothetical protein; 35.7 2.8E+02 0.0061 27.1 9.5 30 254-283 131-160 (343)
92 PRK11637 AmiB activator; Provi 35.2 2.6E+02 0.0056 27.9 9.4 86 183-285 43-128 (428)
93 COG1463 Ttg2C ABC-type transpo 34.7 4.4E+02 0.0096 25.7 11.5 99 190-305 176-281 (359)
94 smart00787 Spc7 Spc7 kinetocho 34.6 4.3E+02 0.0094 25.5 14.5 41 113-155 53-102 (312)
95 KOG3284 Vacuolar sorting prote 34.5 1E+02 0.0022 27.9 5.5 43 258-300 19-61 (213)
96 COG4942 Membrane-bound metallo 34.4 4.3E+02 0.0094 26.8 10.6 108 165-282 139-246 (420)
97 PF10168 Nup88: Nuclear pore c 34.3 5.2E+02 0.011 28.0 11.9 20 211-230 596-615 (717)
98 PF04899 MbeD_MobD: MbeD/MobD 34.1 2E+02 0.0044 21.6 9.6 22 214-235 41-62 (70)
99 PF11855 DUF3375: Protein of u 33.9 1.6E+02 0.0035 30.1 7.8 67 211-288 147-213 (478)
100 PF01763 Herpes_UL6: Herpesvir 33.7 2.8E+02 0.0061 29.2 9.4 49 172-220 355-403 (557)
101 PF06056 Terminase_5: Putative 33.6 28 0.00061 25.0 1.6 25 297-321 2-26 (58)
102 PF02344 Myc-LZ: Myc leucine z 33.5 1.3E+02 0.0028 19.2 4.7 26 197-222 4-29 (32)
103 PRK14139 heat shock protein Gr 33.3 2.2E+02 0.0048 25.5 7.6 41 180-220 36-76 (185)
104 PF05667 DUF812: Protein of un 33.2 2.2E+02 0.0048 30.1 8.7 25 247-271 534-561 (594)
105 KOG0804 Cytoplasmic Zn-finger 33.0 2E+02 0.0044 29.3 7.9 22 121-142 201-222 (493)
106 PF03148 Tektin: Tektin family 32.8 5E+02 0.011 25.7 13.0 91 211-307 268-364 (384)
107 PF10205 KLRAQ: Predicted coil 32.6 2.7E+02 0.0059 22.6 7.3 19 191-209 44-62 (102)
108 PF04108 APG17: Autophagy prot 32.5 5.2E+02 0.011 25.8 11.6 47 215-270 77-123 (412)
109 PF10267 Tmemb_cc2: Predicted 32.4 1E+02 0.0022 31.0 5.8 80 174-253 224-308 (395)
110 PF06248 Zw10: Centromere/kine 31.8 4.4E+02 0.0096 27.5 10.8 18 294-311 149-166 (593)
111 TIGR02675 tape_meas_nterm tape 31.5 2.2E+02 0.0048 21.3 6.5 48 267-321 10-57 (75)
112 KOG4657 Uncharacterized conser 31.4 4.1E+02 0.0088 24.7 9.0 27 276-302 207-235 (246)
113 PF15397 DUF4618: Domain of un 31.4 3.1E+02 0.0068 25.9 8.6 41 199-239 65-105 (258)
114 PF08826 DMPK_coil: DMPK coile 31.1 2.1E+02 0.0046 20.9 7.7 13 220-232 44-56 (61)
115 PF07886 BA14K: BA14K-like pro 30.6 48 0.001 21.0 2.1 26 36-61 2-27 (31)
116 PRK14147 heat shock protein Gr 30.5 2.5E+02 0.0055 24.7 7.5 18 200-217 42-59 (172)
117 PRK10722 hypothetical protein; 30.2 2E+02 0.0043 27.0 6.9 43 188-237 170-212 (247)
118 PF07888 CALCOCO1: Calcium bin 30.0 5.3E+02 0.011 27.1 10.6 29 67-95 39-70 (546)
119 PRK14143 heat shock protein Gr 29.9 2.5E+02 0.0055 26.1 7.7 23 197-219 88-110 (238)
120 PRK14154 heat shock protein Gr 29.9 2.4E+02 0.0052 25.7 7.4 19 198-216 74-92 (208)
121 PF09798 LCD1: DNA damage chec 29.6 2.4E+02 0.0051 30.3 8.2 50 181-230 2-62 (654)
122 PF10498 IFT57: Intra-flagella 29.6 5.4E+02 0.012 25.4 10.3 37 5-44 47-83 (359)
123 KOG0993 Rab5 GTPase effector R 29.4 3.5E+02 0.0075 27.5 8.7 44 247-293 152-195 (542)
124 cd05022 S-100A13 S-100A13: S-1 29.3 71 0.0015 24.9 3.4 38 270-308 47-84 (89)
125 KOG0971 Microtubule-associated 28.8 5.9E+02 0.013 28.6 10.9 31 211-241 406-436 (1243)
126 TIGR03017 EpsF chain length de 28.6 5.5E+02 0.012 25.3 10.5 13 247-259 381-393 (444)
127 TIGR01837 PHA_granule_1 poly(h 28.5 3.3E+02 0.0072 22.3 8.6 19 216-234 97-115 (118)
128 PRK14158 heat shock protein Gr 28.4 3.1E+02 0.0066 24.8 7.7 24 197-220 61-84 (194)
129 KOG0859 Synaptobrevin/VAMP-lik 28.3 4.6E+02 0.01 23.9 9.1 20 290-309 169-188 (217)
130 COG3074 Uncharacterized protei 28.2 2.7E+02 0.0058 21.1 7.7 13 173-185 5-17 (79)
131 PF07926 TPR_MLP1_2: TPR/MLP1/ 28.1 3.5E+02 0.0075 22.4 8.9 18 211-228 101-118 (132)
132 KOG0994 Extracellular matrix g 28.1 2.4E+02 0.0052 32.4 8.0 32 186-217 1699-1730(1758)
133 PRK15422 septal ring assembly 28.0 2.9E+02 0.0062 21.4 9.4 53 172-225 4-63 (79)
134 PF05064 Nsp1_C: Nsp1-like C-t 27.8 1.5E+02 0.0033 24.1 5.3 46 194-239 57-102 (116)
135 TIGR01069 mutS2 MutS2 family p 27.7 7.6E+02 0.017 27.0 12.0 10 79-88 311-320 (771)
136 TIGR03319 YmdA_YtgF conserved 27.7 4E+02 0.0086 27.6 9.4 20 289-308 164-183 (514)
137 cd00584 Prefoldin_alpha Prefol 27.4 3.4E+02 0.0073 22.0 7.8 48 265-312 78-125 (129)
138 PF04108 APG17: Autophagy prot 27.3 5.2E+02 0.011 25.8 10.0 44 269-316 327-370 (412)
139 KOG0161 Myosin class II heavy 27.3 2.3E+02 0.0049 34.3 8.2 32 254-285 1527-1558(1930)
140 TIGR03027 pepcterm_export puta 27.0 58 0.0013 28.0 2.8 37 113-149 23-59 (165)
141 PF04568 IATP: Mitochondrial A 27.0 3.4E+02 0.0073 21.9 7.7 28 204-231 72-99 (100)
142 PRK14161 heat shock protein Gr 26.8 4.2E+02 0.0091 23.5 8.2 23 197-219 40-62 (178)
143 KOG0250 DNA repair protein RAD 26.7 4.1E+02 0.0088 30.2 9.5 37 273-309 915-951 (1074)
144 TIGR03752 conj_TIGR03752 integ 26.5 1.6E+02 0.0035 30.2 6.1 21 211-231 119-139 (472)
145 PRK10803 tol-pal system protei 26.4 1.3E+02 0.0027 28.3 5.1 95 191-285 37-172 (263)
146 PF10018 Med4: Vitamin-D-recep 26.3 4.5E+02 0.0098 23.1 9.9 18 285-302 78-95 (188)
147 TIGR00756 PPR pentatricopeptid 26.3 1.2E+02 0.0025 17.6 3.4 30 258-287 2-31 (35)
148 PF09789 DUF2353: Uncharacteri 26.2 3.5E+02 0.0076 26.4 8.2 89 196-284 135-227 (319)
149 PF02403 Seryl_tRNA_N: Seryl-t 26.2 78 0.0017 25.1 3.2 58 214-278 42-99 (108)
150 COG1196 Smc Chromosome segrega 26.1 5.8E+02 0.013 29.2 11.1 29 258-286 444-472 (1163)
151 PF10975 DUF2802: Protein of u 26.0 2E+02 0.0043 21.5 5.1 50 214-278 4-53 (70)
152 PRK12704 phosphodiesterase; Pr 25.6 4.6E+02 0.01 27.2 9.5 135 175-309 52-190 (520)
153 PF11455 DUF3018: Protein of 25.6 31 0.00066 25.7 0.6 7 81-87 19-25 (65)
154 PHA02562 46 endonuclease subun 25.6 5.7E+02 0.012 26.0 10.2 119 172-300 163-281 (562)
155 cd00632 Prefoldin_beta Prefold 25.5 3.3E+02 0.0073 21.5 6.8 21 212-232 74-94 (105)
156 PRK15178 Vi polysaccharide exp 25.2 7.4E+02 0.016 25.2 10.6 29 257-285 311-339 (434)
157 PF00036 EF-hand_1: EF hand; 25.0 28 0.00061 21.3 0.3 17 284-300 13-29 (29)
158 PF09726 Macoilin: Transmembra 24.9 9.1E+02 0.02 26.2 13.0 56 265-320 592-658 (697)
159 PF01535 PPR: PPR repeat; Int 24.9 1.1E+02 0.0025 17.4 3.1 29 258-286 2-30 (31)
160 PRK03947 prefoldin subunit alp 24.7 4E+02 0.0087 22.0 11.0 35 269-303 89-123 (140)
161 KOG2150 CCR4-NOT transcription 24.7 8.5E+02 0.018 25.7 11.0 51 268-320 116-166 (575)
162 PF05266 DUF724: Protein of un 24.5 4.2E+02 0.0091 23.7 7.9 8 180-187 90-97 (190)
163 COG1415 Uncharacterized conser 24.4 99 0.0022 30.5 4.0 35 270-304 331-365 (373)
164 PF04977 DivIC: Septum formati 24.4 2.8E+02 0.0061 20.1 6.3 36 194-229 24-59 (80)
165 PF13942 Lipoprotein_20: YfhG 24.3 3.2E+02 0.0069 24.3 6.8 44 187-237 123-166 (179)
166 TIGR02231 conserved hypothetic 24.1 4.6E+02 0.01 26.9 9.2 37 247-283 125-161 (525)
167 PRK14127 cell division protein 24.0 2.9E+02 0.0062 22.6 6.1 21 186-206 29-49 (109)
168 PF13758 Prefoldin_3: Prefoldi 23.9 2.6E+02 0.0057 22.5 5.7 27 211-237 71-97 (99)
169 KOG0161 Myosin class II heavy 23.9 3.9E+02 0.0085 32.4 9.3 9 137-145 691-699 (1930)
170 PF14782 BBS2_C: Ciliary BBSom 23.8 5.2E+02 0.011 26.2 9.2 14 137-150 281-294 (431)
171 PF09726 Macoilin: Transmembra 23.7 2.3E+02 0.005 30.6 7.0 20 213-232 493-512 (697)
172 PRK14755 transcriptional regul 23.4 66 0.0014 19.0 1.6 17 22-43 2-18 (26)
173 COG3206 GumC Uncharacterized p 23.4 7.4E+02 0.016 24.8 10.4 17 247-263 412-428 (458)
174 PF08317 Spc7: Spc7 kinetochor 23.4 6.7E+02 0.014 24.1 15.2 35 119-154 63-106 (325)
175 PF05597 Phasin: Poly(hydroxya 23.3 4.6E+02 0.0099 22.1 7.9 16 218-233 112-127 (132)
176 PRK14148 heat shock protein Gr 23.1 4.4E+02 0.0095 23.8 7.7 24 197-220 61-84 (195)
177 PF13171 DUF4004: Protein of u 23.0 1.5E+02 0.0032 27.0 4.6 30 275-305 120-149 (199)
178 PF05010 TACC: Transforming ac 22.9 4.4E+02 0.0096 24.0 7.8 11 189-199 145-155 (207)
179 PF10475 DUF2450: Protein of u 22.9 6.4E+02 0.014 23.7 13.4 37 173-209 43-79 (291)
180 PF10211 Ax_dynein_light: Axon 22.8 5.4E+02 0.012 22.8 9.8 24 211-234 123-146 (189)
181 TIGR02168 SMC_prok_B chromosom 22.7 9.7E+02 0.021 26.5 12.0 141 174-318 784-924 (1179)
182 KOG0977 Nuclear envelope prote 22.7 8.1E+02 0.018 25.7 10.5 68 210-280 108-175 (546)
183 PF13864 Enkurin: Calmodulin-b 22.5 2.2E+02 0.0047 22.4 5.1 23 206-228 72-94 (98)
184 KOG2264 Exostosin EXT1L [Signa 22.4 3.3E+02 0.0072 28.9 7.4 24 187-210 100-123 (907)
185 TIGR02169 SMC_prok_A chromosom 22.3 1E+03 0.022 26.5 12.0 8 35-42 561-568 (1164)
186 KOG0995 Centromere-associated 22.3 5.4E+02 0.012 27.1 9.0 28 6-42 108-135 (581)
187 KOG2629 Peroxisomal membrane a 22.0 7.2E+02 0.016 24.0 9.2 8 124-131 78-85 (300)
188 cd05023 S-100A11 S-100A11: S-1 22.0 74 0.0016 24.7 2.2 33 270-303 52-84 (89)
189 COG1561 Uncharacterized stress 21.9 2.8E+02 0.0061 26.7 6.4 41 247-287 216-256 (290)
190 PRK00106 hypothetical protein; 21.8 9.4E+02 0.02 25.2 11.0 38 268-308 167-204 (535)
191 KOG1937 Uncharacterized conser 21.6 8.1E+02 0.018 25.2 9.8 49 247-302 432-483 (521)
192 COG3074 Uncharacterized protei 21.5 3.7E+02 0.008 20.4 9.3 7 179-185 7-13 (79)
193 PF04568 IATP: Mitochondrial A 21.4 4.4E+02 0.0095 21.2 7.4 31 194-224 69-99 (100)
194 KOG1655 Protein involved in va 21.4 6.3E+02 0.014 23.0 10.2 10 144-153 2-11 (218)
195 KOG0250 DNA repair protein RAD 21.2 1E+03 0.022 27.2 11.2 28 212-239 355-382 (1074)
196 TIGR03752 conj_TIGR03752 integ 21.2 4E+02 0.0087 27.4 7.7 27 211-237 112-138 (472)
197 PF06810 Phage_GP20: Phage min 21.0 5.4E+02 0.012 22.1 9.0 14 286-299 117-130 (155)
198 PRK14151 heat shock protein Gr 20.9 4.3E+02 0.0094 23.3 7.1 21 197-217 41-61 (176)
199 KOG3684 Ca2+-activated K+ chan 20.9 3.9E+02 0.0085 27.4 7.5 34 203-236 436-469 (489)
200 KOG4286 Dystrophin-like protei 20.9 5.8E+02 0.012 28.1 9.0 22 282-303 273-294 (966)
201 PHA00728 hypothetical protein 20.9 26 0.00056 29.3 -0.6 8 273-280 60-67 (151)
202 PF07962 Swi3: Replication For 20.9 1.2E+02 0.0026 23.4 3.2 30 287-317 52-81 (83)
203 KOG1760 Molecular chaperone Pr 20.8 2.7E+02 0.0059 23.4 5.4 38 200-237 80-117 (131)
204 TIGR02449 conserved hypothetic 20.8 3.6E+02 0.0078 20.0 8.1 24 199-222 19-42 (65)
205 PF15466 DUF4635: Domain of un 20.7 2.6E+02 0.0056 23.3 5.2 26 209-234 99-124 (135)
206 PRK14162 heat shock protein Gr 20.7 5.2E+02 0.011 23.3 7.6 19 197-215 60-78 (194)
207 cd05026 S-100Z S-100Z: S-100Z 20.6 1E+02 0.0022 23.9 2.8 32 269-301 52-83 (93)
208 COG3123 Uncharacterized protei 20.4 98 0.0021 24.3 2.5 23 52-74 33-55 (94)
209 PF04380 BMFP: Membrane fusoge 20.4 3.9E+02 0.0084 20.3 8.2 22 214-235 56-77 (79)
210 PF05531 NPV_P10: Nucleopolyhe 20.3 2.1E+02 0.0046 21.9 4.3 22 213-234 40-61 (75)
211 KOG0861 SNARE protein YKT6, sy 20.3 4.8E+02 0.01 23.4 7.1 42 194-235 134-175 (198)
212 PF05600 DUF773: Protein of un 20.2 7.1E+02 0.015 25.8 9.5 59 174-233 434-492 (507)
213 PRK00409 recombination and DNA 20.2 5.3E+02 0.011 28.2 9.0 10 80-89 317-326 (782)
214 KOG0946 ER-Golgi vesicle-tethe 20.1 1.2E+03 0.026 25.9 11.3 10 122-131 501-510 (970)
215 PRK13729 conjugal transfer pil 20.1 2.8E+02 0.0061 28.5 6.4 44 186-229 82-125 (475)
No 1
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-79 Score=567.27 Aligned_cols=303 Identities=30% Similarity=0.456 Sum_probs=271.8
Q ss_pred hHHHHHHHHhcCCCCCCcccCCccchHhHHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec--CCCCCeeE
Q 047127 5 SSIQFIDTALWCTTPFRLSYADPNQKWLIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS--QSTPPIHF 82 (322)
Q Consensus 5 ~v~~wL~~vl~~~~~~~~~Y~~~~~~~~v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~--g~~y~iPi 82 (322)
++.+|.+.++.. .|.+. |+.++|.+++++.|++|+|+|++|+|+||++++||.++||||+. |++|||||
T Consensus 2 a~~q~~~~~~~~------~~~~~---~~~~~~~l~lls~~~sL~P~t~tf~~~Dg~s~~ll~~~GTIp~~~~G~tYnIPV 72 (365)
T KOG2391|consen 2 AVSQRQPKVIPY------IYNYK---DLTRQDLLNLLSSFKSLRPKTDTFTHNDGRSRLLLQLDGTIPVPYQGVTYNIPV 72 (365)
T ss_pred cccccccceecc------cccch---hhHHHHHHHHHHhccccCcccceEEecCCCccchhhccCcccccccCCcccceE
Confidence 467888888876 57764 45589999999999999999999999999999999999999999 99999999
Q ss_pred EEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccccccCCCCCHHHHHHHHHHhhccCCCCCcCCC----
Q 047127 83 TLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSHDHPLIYYST---- 158 (322)
Q Consensus 83 ~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~~W~~~~s~L~~lv~~l~~~f~~~pPl~~~pp---- 158 (322)
+|||+++||+.||+|||+ ||++|.|+. |.|||+||+||+|||++|.+|+|||++||++|...|+++||+|+++-
T Consensus 73 ~iWlldtyP~~pP~c~Vn-PT~~M~ik~-~~hVd~nG~V~LPYLh~W~~pssdLv~Liq~l~a~f~~~pP~ys~~~~~~p 150 (365)
T KOG2391|consen 73 IIWLLDTYPYYPPICYVN-PTSTMIIKV-HEHVDPNGKVYLPYLHNWDPPSSDLVGLIQELIAAFSEDPPVYSRSLPSPP 150 (365)
T ss_pred EEEecccCCCCCCeEEec-CCchhhhHH-hhccCCCCeEechhhccCCCccchHHHHHHHHHHHhcCCCccccCCCCCCC
Confidence 999999999999999999 999999988 49999999999999999999999999999999999999999998631
Q ss_pred CC------------C---------CC-C-------------------C-----chhhhHHHHHHHHHHHHHHHHHHHHHh
Q 047127 159 ES------------S---------FT-R-------------------T-----SLVSKREALDRFSGMLHYDMGALQART 192 (322)
Q Consensus 159 ~p------------~---------p~-~-------------------p-----~~~~~~~l~~~~~~~L~~~l~~~~~~~ 192 (322)
+| | |+ . | ..++++++++++.++++++.++.+++.
T Consensus 151 ~p~p~~~~~~~p~~p~~~~~~~p~p~p~~~~gas~~~~~~~d~~~~yp~n~~~~~~irasvisa~~eklR~r~eeeme~~ 230 (365)
T KOG2391|consen 151 PPYPQTEYNTPPLKPKGSAYKPPLPPPPPPGGASALPYMTDDNAEPYPPNASGKLVIRASVISAVREKLRRRREEEMERL 230 (365)
T ss_pred CCCCcccCCCCCCCCCCcCcCCCCCCCCCCCccccCcccCCCCCCcCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0 00 0 0 012467899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHcCCccccccccCC-CcccccccCChhHHHHHH
Q 047127 193 EEETEALLTIQVELKNRA-------RKLKETVVELAGKADVLTNWLKVNGDPKAIGVILGD-RVEDAFEAIDAESKAELE 264 (322)
Q Consensus 193 ~~e~~~L~~~q~~L~~~~-------~~Le~~~~~l~~~~~~L~~~~~e~~~~~~~~~~~~~-dide~v~~~~~l~~QLle 264 (322)
.+++++|.+..++|+.++ +.||++.+.|+.++++|+.|++|+-++ ++..++ |+|+++++++++++|+++
T Consensus 231 ~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~---~~n~~~~~~D~~~~~~~~l~kq~l~ 307 (365)
T KOG2391|consen 231 QAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEK---AENLEALDIDEAIECTAPLYKQILE 307 (365)
T ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh---hccCcCCCchhhhhccchHHHHHHH
Confidence 999999999988887776 668888888999999999999995433 333345 999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 047127 265 GSAADEAIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLVKLEVKRGFT 321 (322)
Q Consensus 265 l~Aed~AieDtIy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Rali~Ki~~~~gl~ 321 (322)
++|+|.||||+||+|+++|++|+|+||.|||+||.||||||++||+++||++.+|+.
T Consensus 308 ~~A~d~aieD~i~~L~~~~r~G~i~l~~yLr~VR~lsReQF~~rat~qk~r~~~~l~ 364 (365)
T KOG2391|consen 308 CYALDLAIEDAIYSLGKSLRDGVIDLDQYLRHVRLLSREQFILRATMQKCRQTAGLA 364 (365)
T ss_pred hhhhhhHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999999999999999999985
No 2
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=100.00 E-value=1.2e-43 Score=295.07 Aligned_cols=119 Identities=39% Similarity=0.693 Sum_probs=108.6
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec--CCCCCeeEEEeecccCCCCCCEEEEecCCCCCcccC
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS--QSTPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQ 110 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~--g~~y~iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~ 110 (322)
+++|+..+|++||+|+|++++||++||++++||||+|||||. |++|||||.||||++||.+||+|||+ ||++|.|++
T Consensus 1 ~~~d~~~~l~~y~~L~p~~~~ft~~~G~~~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~-pt~~m~I~~ 79 (121)
T PF05743_consen 1 TFNDVLSVLQNYPSLRPRTDTFTFNDGSSKLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVR-PTPSMVIKP 79 (121)
T ss_dssp HHHHHHHHHHHSTTEEEEEEEEESTTSTEEEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE--GCCTECCGG
T ss_pred CHHHHHHHHHHCCCCcEeeeeeEcCCCChheEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEe-CCCCCCcCC
Confidence 369999999999999999999999999999999999999999 99999999999999999999999999 999999999
Q ss_pred CCCccCCCCceeccccccccCCCCCHHHHHHHHHHhhccCCCC
Q 047127 111 NHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSHDHPL 153 (322)
Q Consensus 111 ~h~~Vd~~G~v~~pyL~~W~~~~s~L~~lv~~l~~~f~~~pPl 153 (322)
+| +||+||+|++|||++|++++|||++|+++|+++|+++|||
T Consensus 80 ~~-~Vd~~G~v~~pyL~~W~~~~s~L~~lv~~l~~~F~~~pPl 121 (121)
T PF05743_consen 80 SH-HVDSNGRVYLPYLQNWNPPSSNLVDLVQELQAVFSEEPPL 121 (121)
T ss_dssp CC-CB-TTSBB-SHHHHT--TTTS-HHHHHHHHHHCCCHS-SE
T ss_pred CC-eECCCCCEeCchhccCCCCCCCHHHHHHHHHHHHhHcCCC
Confidence 96 9999999999999999999999999999999999999996
No 3
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=99.96 E-value=3.2e-29 Score=185.96 Aligned_cols=65 Identities=48% Similarity=0.697 Sum_probs=62.3
Q ss_pred ccccccCChhHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047127 249 EDAFEAIDAESKAELEGSAADEAIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLVK 313 (322)
Q Consensus 249 de~v~~~~~l~~QLlel~Aed~AieDtIy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Rali~K 313 (322)
|++|++++|+++||||++|||+||+||||+|++||++|+|++|+|+|+||.|||||||+|||++|
T Consensus 1 D~~v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaReQF~~Ral~~K 65 (65)
T PF09454_consen 1 DEIVVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLAREQFLKRALIQK 65 (65)
T ss_dssp GGTEE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 78999999999999999999999999999999999999999999999999999999999999998
No 4
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.09 E-value=1.1e-09 Score=93.62 Aligned_cols=100 Identities=22% Similarity=0.394 Sum_probs=78.8
Q ss_pred HHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec------CCCCCeeEEEeecccCCCCCCEEEEecCCCCCc
Q 047127 34 RKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS------QSTPPIHFTLWLHENYPSMAPMAFIVSSNSMYP 107 (322)
Q Consensus 34 ~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~------g~~y~iPi~Iwlp~~yP~~pP~v~v~~pt~~m~ 107 (322)
.+|+..+...-+ +...++..+|| +++.+.|+|... |.. +++.|++|.+||..||.|++. +.
T Consensus 4 ~~E~~~~~~~~~---~~~~v~~~~~~---~~~~w~~~i~gp~~~~y~g~~--f~~~l~~p~~yP~~pP~v~f~-~~---- 70 (145)
T smart00212 4 LKELKELLKDPP---PGISAYPVDED---NLLEWTGTIVGPPGTPYEGGI--FKLTIEFPPDYPFKPPKVKFI-TK---- 70 (145)
T ss_pred HHHHHHHHhCCC---CCeEEEECCCC---ChheEEEEEEcCCCCCcCCcE--EEEEEECCcccCCCCCEEEEe-CC----
Confidence 466666655433 23444555655 577888887643 444 799999999999999999998 42
Q ss_pred ccCCCCccCCCCceeccccc--cccCCCCCHHHHHHHHHHhhcc
Q 047127 108 IRQNHPFVSPCGTITTPYLQ--TWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 108 I~~~h~~Vd~~G~v~~pyL~--~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
..|++||++|.|++++|. +|++ .++|.+++..+...|.+
T Consensus 71 --i~Hp~i~~~G~icl~~l~~~~W~p-~~~l~~il~~i~~~l~~ 111 (145)
T smart00212 71 --IYHPNVDSSGEICLDILKQEKWSP-ATTLETVLLSIQSLLSE 111 (145)
T ss_pred --ceEeeECCCCCEehhhcCCCCCCC-CCcHHHHHHHHHHHHhC
Confidence 568999999999999998 9995 79999999999999976
No 5
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=98.87 E-value=2.4e-08 Score=84.87 Aligned_cols=101 Identities=24% Similarity=0.400 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCC---CeeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTP---PIHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y---~iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+|...+.+.-+ +...+...++ .+..+.|+|... +..| .+.+.|++|.+||.+||.|.+. +
T Consensus 4 l~~E~~~l~~~~~---~~~~v~~~~~----~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~-~------ 69 (141)
T cd00195 4 LQKELKDLKKDPP---SGISAEPVEE----NLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFV-T------ 69 (141)
T ss_pred HHHHHHHHHhCCC---CCeEEEECCC----ChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEe-C------
Confidence 3567777765443 1222233333 577788888765 3333 2888999999999999999997 3
Q ss_pred cCCCCccCCCCceecccccc--ccCCCCCHHHHHHHHHHhhc
Q 047127 109 RQNHPFVSPCGTITTPYLQT--WSYPGYNLNDLVHNLVQIFS 148 (322)
Q Consensus 109 ~~~h~~Vd~~G~v~~pyL~~--W~~~~s~L~~lv~~l~~~f~ 148 (322)
+..|++||.+|.|++++|.. |.+ ..+|.+++..+...|.
T Consensus 70 ~i~HpnV~~~G~icl~~l~~~~W~p-~~~l~~il~~i~~~l~ 110 (141)
T cd00195 70 KIYHPNVDENGKICLSILKTHGWSP-AYTLRTVLLSLQSLLN 110 (141)
T ss_pred CcccCCCCCCCCCchhhcCCCCcCC-cCcHHHHHHHHHHHHh
Confidence 25689999999999999985 875 7889999999999998
No 6
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=98.74 E-value=1.4e-07 Score=81.61 Aligned_cols=102 Identities=19% Similarity=0.279 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+|+..+...-+ +...++..+ .++..++++|... |+.|. +.+.|.+|.+||+.||.|... |
T Consensus 7 l~~E~~~l~~~~~---~~i~~~~~~----~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~--t----- 72 (152)
T PTZ00390 7 IEKETQNLANDPP---PGIKAEPDP----GNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFL--T----- 72 (152)
T ss_pred HHHHHHHHHhCCC---CCeEEEECC----CCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEe--c-----
Confidence 4577777765322 222233332 2688999999765 55453 899999999999999999886 2
Q ss_pred cCCCCccCCCCceeccccc-cccCCCCCHHHHHHHHHHhhcc
Q 047127 109 RQNHPFVSPCGTITTPYLQ-TWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 109 ~~~h~~Vd~~G~v~~pyL~-~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
+..||+|+.+|.|++.+|. +|++ ..++.+++..+...|..
T Consensus 73 ~i~HPNV~~~G~iCl~iL~~~W~p-~~ti~~iL~~i~~ll~~ 113 (152)
T PTZ00390 73 KIYHPNIDKLGRICLDILKDKWSP-ALQIRTVLLSIQALLSA 113 (152)
T ss_pred CCeeceECCCCeEECccCcccCCC-CCcHHHHHHHHHHHHhC
Confidence 2469999999999999994 8996 89999999999998864
No 7
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=98.68 E-value=2.5e-07 Score=79.57 Aligned_cols=102 Identities=19% Similarity=0.355 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCC---CeeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTP---PIHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y---~iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+|+..+...-+ +...+...+ .+++.+.++|... |+.| .+.+.|.+|.+||+.||.|... |
T Consensus 6 l~kE~~~l~~~~~---~~~~~~~~~----~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~--t----- 71 (147)
T PLN00172 6 IQKEHKDLLKDPP---SNCSAGPSD----ENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFT--T----- 71 (147)
T ss_pred HHHHHHHHHhCCC---CCeEEEECC----CChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEe--c-----
Confidence 4678888775422 222223322 3688888888655 4444 3889999999999999999886 2
Q ss_pred cCCCCccCCCCceecccc-ccccCCCCCHHHHHHHHHHhhcc
Q 047127 109 RQNHPFVSPCGTITTPYL-QTWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 109 ~~~h~~Vd~~G~v~~pyL-~~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
+.-||+|+.+|.|++..| ++|++ ..++.+++..+...|..
T Consensus 72 ~i~HPNv~~~G~iCl~il~~~W~p-~~ti~~il~~i~~ll~~ 112 (147)
T PLN00172 72 KIYHPNINSNGSICLDILRDQWSP-ALTVSKVLLSISSLLTD 112 (147)
T ss_pred CcccceECCCCEEEcccCcCCCCC-cCcHHHHHHHHHHHHhC
Confidence 246999999999999999 48996 78999999999998864
No 8
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.4e-07 Score=80.04 Aligned_cols=103 Identities=24% Similarity=0.390 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+|+..+...- .+.+.....+|- ++..+.++|..- ++.|. +.+.|-+|.+||+.||.|... .
T Consensus 10 L~kE~~~l~~~~---~~~~~a~p~~d~---~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~-t------ 76 (153)
T COG5078 10 LLKELKKLQKDP---PPGISAGPVDDD---NLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFT-T------ 76 (153)
T ss_pred HHHHHHHHhcCC---CCceEEEECCCC---cceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeec-c------
Confidence 357777776554 223333333322 799999999766 33332 889999999999999999887 3
Q ss_pred cCCCCccCCCCceeccccc-cccCCCCCHHHHHHHHHHhhcc
Q 047127 109 RQNHPFVSPCGTITTPYLQ-TWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 109 ~~~h~~Vd~~G~v~~pyL~-~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
+-.||+||.+|+|++..|+ +|+ |..+|..++..|+..|..
T Consensus 77 ~i~HPNV~~~G~vCLdIL~~~Ws-P~~~l~sILlsl~slL~~ 117 (153)
T COG5078 77 KIFHPNVDPSGNVCLDILKDRWS-PVYTLETILLSLQSLLLS 117 (153)
T ss_pred CCcCCCcCCCCCChhHHHhCCCC-ccccHHHHHHHHHHHHcC
Confidence 3569999999999999998 899 489999999999999877
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=98.53 E-value=5e-07 Score=76.57 Aligned_cols=78 Identities=21% Similarity=0.392 Sum_probs=61.5
Q ss_pred eEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccc--cccCCCCCH
Q 047127 63 NLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQ--TWSYPGYNL 136 (322)
Q Consensus 63 ~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~--~W~~~~s~L 136 (322)
.+..+.++|... |+.|. +.+.|.+|.+||+.||.|... . +..||+||.+|+|+++.|. +|++ ..++
T Consensus 26 ~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~-t------~i~HPni~~~G~icl~~l~~~~W~p-~~~i 97 (140)
T PF00179_consen 26 NLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFL-T------PIFHPNIDENGRICLDILNPESWSP-SYTI 97 (140)
T ss_dssp ETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEES-S------S-SBTTB-TTSBBGHGGGTTTTC-T-TSHH
T ss_pred ChheEEEEEeccCccceecccccccccccccccccccccccc-c------ccccccccccccchhhhhhcccCCc-cccc
Confidence 688888888763 33332 899999999999999999997 3 3568999999999999999 5886 8999
Q ss_pred HHHHHHHHHhhc
Q 047127 137 NDLVHNLVQIFS 148 (322)
Q Consensus 137 ~~lv~~l~~~f~ 148 (322)
..++..+...|.
T Consensus 98 ~~il~~i~~ll~ 109 (140)
T PF00179_consen 98 ESILLSIQSLLS 109 (140)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHh
Confidence 999999999883
No 10
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.6e-06 Score=73.12 Aligned_cols=98 Identities=24% Similarity=0.463 Sum_probs=76.0
Q ss_pred HHHHHHHHH-hCCCCccccceeecCCCCceeEEEEEEeeeec------CCCCCeeEEEeecccCCCCCCEEEEecCCCCC
Q 047127 34 RKQLLSLLQ-NYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS------QSTPPIHFTLWLHENYPSMAPMAFIVSSNSMY 106 (322)
Q Consensus 34 ~~dv~~~l~-~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~------g~~y~iPi~Iwlp~~yP~~pP~v~v~~pt~~m 106 (322)
.++++.++. .-|+++. | +++. +|+|+.|||--. |.+ .-+.+-+|.+||+.||+|-..-|
T Consensus 35 q~ELm~Lmms~~~gISA----F--P~~d--nlf~WvGtItGp~dTvyegl~--yklSl~Fp~~YPy~pP~vkFltp---- 100 (175)
T KOG0421|consen 35 QSELMGLMMSNTPGISA----F--PESD--NLFKWVGTITGPKDTVYEGLK--YKLSLSFPNNYPYKPPTVKFLTP---- 100 (175)
T ss_pred HHHHHHHHhcCCCCccc----C--cCcC--ceeEEeeEeeCCCCccccCcE--EEEEEecCCCCCCCCCeeEeecc----
Confidence 678888776 3554432 4 4433 899999999655 444 56778899999999999877513
Q ss_pred cccCCCCccCCCCceeccccc-cccCCCCCHHHHHHHHHHhhcc
Q 047127 107 PIRQNHPFVSPCGTITTPYLQ-TWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 107 ~I~~~h~~Vd~~G~v~~pyL~-~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
--||+||.+|.|++.+|. .|.. -++...++-.++..+++
T Consensus 101 ---c~HPNVD~~GnIcLDILkdKWSa-~YdVrTILLSiQSLLGE 140 (175)
T KOG0421|consen 101 ---CFHPNVDLSGNICLDILKDKWSA-VYDVRTILLSIQSLLGE 140 (175)
T ss_pred ---ccCCCccccccchHHHHHHHHHH-HHhHHHHHHHHHHHhCC
Confidence 248999999999999998 7985 78888888888888875
No 11
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2e-06 Score=72.21 Aligned_cols=80 Identities=18% Similarity=0.346 Sum_probs=66.4
Q ss_pred eeEEEEEEeeeecCCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccc--cccCCCCCH
Q 047127 62 VNLFKVSGCFHVSQSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQ--TWSYPGYNL 136 (322)
Q Consensus 62 ~~Ll~l~Gtipv~g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~--~W~~~~s~L 136 (322)
.+++.++|.|--.|..|+ +-+.|=+|-+||+.||.+-+. + +-.|++||..|.|++|.+. +|.+ ....
T Consensus 30 ~nll~wt~llipd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~----t---kiYHpNVDe~gqvClPiis~EnWkP-~T~t 101 (153)
T KOG0422|consen 30 ANLLKWTGLLIPDKPPYNKGAFRLEIDFPVEYPFKPPKIKFK----T---KIYHPNVDEKGQVCLPIISAENWKP-ATRT 101 (153)
T ss_pred ccceeEEeEecCCCCCccCcceEEEeeCCCCCCCCCCeeeee----e---eeccCCCCCCCceeeeeeecccccC-cccH
Confidence 479999998743344444 889999999999999999887 2 4569999999999999998 8985 7788
Q ss_pred HHHHHHHHHhhcc
Q 047127 137 NDLVHNLVQIFSH 149 (322)
Q Consensus 137 ~~lv~~l~~~f~~ 149 (322)
-++++.|.....+
T Consensus 102 eqVlqaLi~liN~ 114 (153)
T KOG0422|consen 102 EQVLQALIALIND 114 (153)
T ss_pred HHHHHHHHHHhcC
Confidence 8899999887654
No 12
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.7e-06 Score=73.06 Aligned_cols=87 Identities=20% Similarity=0.359 Sum_probs=71.3
Q ss_pred eecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccc--
Q 047127 54 FTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQ-- 127 (322)
Q Consensus 54 ~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~-- 127 (322)
-.+.|| +.+|.+..++||-. |..|. .++.+-+|++||..||.|-.. |. --||+|+++|.|++..|.
T Consensus 29 ~~~~dg-~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~-~p------l~HPNVypsgtVcLsiL~e~ 100 (158)
T KOG0424|consen 29 VKNADG-TLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFK-PP------LFHPNVYPSGTVCLSILNEE 100 (158)
T ss_pred cCCCCC-cceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccC-CC------CcCCCcCCCCcEehhhhccc
Confidence 355677 67899999999988 33322 788899999999999999997 53 459999999999999998
Q ss_pred -cccCCCCCHHHHHHHHHHhhcc
Q 047127 128 -TWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 128 -~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
+|.+ .-+|-.++..+++.+..
T Consensus 101 ~~W~p-aitikqiL~gIqdLL~~ 122 (158)
T KOG0424|consen 101 KDWRP-AITIKQILLGIQDLLDT 122 (158)
T ss_pred cCCCc-hhhHHHHHHHHHHHhcC
Confidence 4985 77898888888887643
No 13
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=4.9e-06 Score=70.86 Aligned_cols=80 Identities=20% Similarity=0.384 Sum_probs=65.9
Q ss_pred eEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccc-cccCCCCCHH
Q 047127 63 NLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQ-TWSYPGYNLN 137 (322)
Q Consensus 63 ~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~-~W~~~~s~L~ 137 (322)
+|..+.-||--. |+.|. +-+.|.||..||+.||-|... | +--||+||.+|+|++..|. +|++ ..+|.
T Consensus 29 nl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~--T-----kIyHPNI~~~G~IclDILk~~WsP-Al~i~ 100 (148)
T KOG0417|consen 29 NLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFL--T-----KIYHPNIDSNGRICLDILKDQWSP-ALTIS 100 (148)
T ss_pred ceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEee--c-----ccccCCcCccccchHHhhhccCCh-hhHHH
Confidence 688888888443 33332 899999999999999988776 2 3569999999999999998 8985 89999
Q ss_pred HHHHHHHHhhccC
Q 047127 138 DLVHNLVQIFSHD 150 (322)
Q Consensus 138 ~lv~~l~~~f~~~ 150 (322)
.++..++..+++.
T Consensus 101 ~VllsI~sLL~~P 113 (148)
T KOG0417|consen 101 KVLLSICSLLSDP 113 (148)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999987653
No 14
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.5e-05 Score=66.46 Aligned_cols=79 Identities=25% Similarity=0.435 Sum_probs=62.7
Q ss_pred eeEEEEEEeeee------cCCCCCeeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccc-cccCCCC
Q 047127 62 VNLFKVSGCFHV------SQSTPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQ-TWSYPGY 134 (322)
Q Consensus 62 ~~Ll~l~Gtipv------~g~~y~iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~-~W~~~~s 134 (322)
.+++....-|-- .|.+ +-+.|-++++||+.||.|-.. . +.-||+|+++|.+++.+|+ +|++ .+
T Consensus 31 ~niM~W~a~I~Gp~~tp~e~gt--FkLtl~FteeYpnkPP~VrFv-s------~mFHPNvya~G~iClDiLqNrWsp-~Y 100 (152)
T KOG0419|consen 31 NNIMEWNAVIFGPQDTPFEGGT--FKLTLEFTEEYPNKPPTVRFV-S------KMFHPNVYADGSICLDILQNRWSP-TY 100 (152)
T ss_pred cceeeeeeeEEcCCCCCcCCce--EEEEEEcccccCCCCCeeEee-e------eccCCCcCCCCcchHHHHhcCCCC-ch
Confidence 355555554422 2556 778899999999999999776 2 3569999999999999999 7885 99
Q ss_pred CHHHHHHHHHHhhccC
Q 047127 135 NLNDLVHNLVQIFSHD 150 (322)
Q Consensus 135 ~L~~lv~~l~~~f~~~ 150 (322)
++..++-.++..++..
T Consensus 101 dva~ILtsiQslL~dP 116 (152)
T KOG0419|consen 101 DVASILTSIQSLLNDP 116 (152)
T ss_pred hHHHHHHHHHHHhcCC
Confidence 9999999998887653
No 15
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0002 Score=62.31 Aligned_cols=77 Identities=18% Similarity=0.304 Sum_probs=62.3
Q ss_pred EEEEeeeecCCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccc-cccCCCCCHHHHHH
Q 047127 66 KVSGCFHVSQSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQ-TWSYPGYNLNDLVH 141 (322)
Q Consensus 66 ~l~Gtipv~g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~-~W~~~~s~L~~lv~ 141 (322)
++.=||--.-.-|. +-+.+-+|..||++||-|-.. + +.-||++|-+|.|++-+|+ +|.+ .-||.+++-
T Consensus 61 ~~elti~PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCl----t---kV~HPNId~~GnVCLnILRedW~P-~lnL~sIi~ 132 (184)
T KOG0420|consen 61 EFELTITPDEGYYQGGKFRFKFKVPNAYPHEPPKVKCL----T---KVYHPNIDLDGNVCLNILREDWRP-VLNLNSIIY 132 (184)
T ss_pred eEEEEEccCcceecCceEEEEEECCCCCCCCCCeeeee----e---ccccCCcCCcchHHHHHHHhcCcc-ccchHHHHH
Confidence 56666643311233 888899999999999999886 2 4669999999999999998 8985 889999999
Q ss_pred HHHHhhccC
Q 047127 142 NLVQIFSHD 150 (322)
Q Consensus 142 ~l~~~f~~~ 150 (322)
-|...|-+-
T Consensus 133 GL~~LF~ep 141 (184)
T KOG0420|consen 133 GLQFLFLEP 141 (184)
T ss_pred HHHHHhccC
Confidence 999998653
No 16
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00031 Score=62.05 Aligned_cols=82 Identities=23% Similarity=0.413 Sum_probs=62.6
Q ss_pred eEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCC-Cceeccccc-cccCCCCCH
Q 047127 63 NLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPC-GTITTPYLQ-TWSYPGYNL 136 (322)
Q Consensus 63 ~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~-G~v~~pyL~-~W~~~~s~L 136 (322)
++-.|+|+|.-. |..|- +=+.|-+|++||+.||-|-.. + +--||+|.++ |.|++..|. +|.. .-+|
T Consensus 34 ~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~-T------kIwHPnVSs~tGaICLDilkd~Wa~-slTl 105 (200)
T KOG0418|consen 34 NLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFI-T------KIWHPNVSSQTGAICLDILKDQWAA-SLTL 105 (200)
T ss_pred ChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeee-e------eeecCCCCcccccchhhhhhcccch-hhhH
Confidence 566789999655 33333 788999999999999999776 3 4568888765 999999998 8985 6788
Q ss_pred HHHHHHHHHhhccCCC
Q 047127 137 NDLVHNLVQIFSHDHP 152 (322)
Q Consensus 137 ~~lv~~l~~~f~~~pP 152 (322)
-..+-+++..++..-|
T Consensus 106 rtvLislQalL~~pEp 121 (200)
T KOG0418|consen 106 RTVLISLQALLCAPEP 121 (200)
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8877777777654443
No 17
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0015 Score=56.82 Aligned_cols=97 Identities=24% Similarity=0.363 Sum_probs=70.3
Q ss_pred HHHHHHHHHHh-CCCCccccceeecCCCCceeEEEEEEeeeec--CCCCCeeEEEeecccCCCCCCEEEEecCCCCCccc
Q 047127 33 IRKQLLSLLQN-YPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS--QSTPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIR 109 (322)
Q Consensus 33 v~~dv~~~l~~-y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~--g~~y~iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~ 109 (322)
+.+||+.++.. |. |=+.+||-++.-+++.|.---. |.. --|.+-+|.+||+..|-|=.. =|
T Consensus 8 id~Dv~KL~~s~ye-------V~~ind~m~ef~V~f~GP~ds~YegGv--Wkv~V~lPd~YP~KSPSIGFv-------nK 71 (189)
T KOG0416|consen 8 IDTDVMKLLMSDYE-------VTIINDGMQEFYVKFHGPKDSPYEGGV--WKVRVELPDNYPFKSPSIGFV-------NK 71 (189)
T ss_pred hhhHHHHHHhcCCe-------EEEecCcccEEEEEeeCCCCCcccCce--EEEEEECCCCCCCCCCcccce-------ee
Confidence 35899999874 53 3356788899999999955322 655 456778999999998876443 15
Q ss_pred CCCCccC-CCCceeccccc-cccCCCCCHHHHHHHHHHh
Q 047127 110 QNHPFVS-PCGTITTPYLQ-TWSYPGYNLNDLVHNLVQI 146 (322)
Q Consensus 110 ~~h~~Vd-~~G~v~~pyL~-~W~~~~s~L~~lv~~l~~~ 146 (322)
--||+|| .+|.|++..+. .|++ -++|+.++..+.-.
T Consensus 72 IfHPNIDe~SGsVCLDViNQtWSp-~yDL~NIfetfLPQ 109 (189)
T KOG0416|consen 72 IFHPNIDEASGSVCLDVINQTWSP-LYDLVNIFETFLPQ 109 (189)
T ss_pred ccCCCchhccCccHHHHHhhhhhH-HHHHHHHHHHHhHH
Confidence 6799999 77999999997 6874 56666665555433
No 18
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=97.20 E-value=0.0012 Score=55.81 Aligned_cols=78 Identities=15% Similarity=0.418 Sum_probs=51.7
Q ss_pred EEEEEEeeeecCCCCCeeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceec---cc-cccccCCCCCHHHH
Q 047127 64 LFKVSGCFHVSQSTPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITT---PY-LQTWSYPGYNLNDL 139 (322)
Q Consensus 64 Ll~l~Gtipv~g~~y~iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~---py-L~~W~~~~s~L~~l 139 (322)
.+.-.|.+.+.|. .++|.|-+|..||..||.+|+. -..... -. |||+.+|.+++ -+ ++.|+ |...+.++
T Consensus 24 ~~~~~~~~~~~~~--~~~l~l~~p~~FP~~pp~v~l~-d~~~~~--~~-pHv~~~G~LCl~~~~~~~D~~~-P~~~~~~~ 96 (133)
T PF14461_consen 24 FLIYEKIVITGGG--PFPLRLVFPDDFPYLPPRVYLE-DPKQFP--LL-PHVESDGKLCLLDEELVLDPWD-PEGIIADC 96 (133)
T ss_pred eeEEEEEEecCCe--EEEEEEEECCcccCcCCEEEec-CccccC--cc-CeEcCCCeEEEecCCcccCccC-HHHHHHHH
Confidence 3444444444454 4999999999999999999998 322211 33 99999998875 22 44555 35566666
Q ss_pred HHHHHHhhc
Q 047127 140 VHNLVQIFS 148 (322)
Q Consensus 140 v~~l~~~f~ 148 (322)
++....++.
T Consensus 97 l~~a~~lL~ 105 (133)
T PF14461_consen 97 LERAIRLLE 105 (133)
T ss_pred HHHHHHHHH
Confidence 665555543
No 19
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0041 Score=67.26 Aligned_cols=72 Identities=19% Similarity=0.401 Sum_probs=59.5
Q ss_pred eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccccccC-------CCCCHHHHHHHHHHhhccCCC
Q 047127 80 IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSY-------PGYNLNDLVHNLVQIFSHDHP 152 (322)
Q Consensus 80 iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~~W~~-------~~s~L~~lv~~l~~~f~~~pP 152 (322)
+.+.|.||.+||..||+||.. .+ +|++ | |+.-.+|+|++-.|..|.- |+|++++++-.++...=.+-|
T Consensus 900 f~fd~~~~~~yp~~pp~~~~~-s~-~~r~--n-pnly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~p 974 (1101)
T KOG0895|consen 900 FFFDFQFPQDYPSSPPLVHYH-SG-GVRL--N-PNLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEP 974 (1101)
T ss_pred EEEEeecCCCCCCCCCceEee-cC-ceee--C-cccccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhccccc
Confidence 889999999999999999996 44 4555 4 5578999999999999973 578999999988888766667
Q ss_pred CCcC
Q 047127 153 LIYY 156 (322)
Q Consensus 153 l~~~ 156 (322)
-|.-
T Consensus 975 y~ne 978 (1101)
T KOG0895|consen 975 YFNE 978 (1101)
T ss_pred ccCc
Confidence 7653
No 20
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.011 Score=49.51 Aligned_cols=65 Identities=22% Similarity=0.429 Sum_probs=47.4
Q ss_pred CCCCCeeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccc-cccCCCCCHHHHHHHHHHhhc
Q 047127 75 QSTPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQ-TWSYPGYNLNDLVHNLVQIFS 148 (322)
Q Consensus 75 g~~y~iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~-~W~~~~s~L~~lv~~l~~~f~ 148 (322)
|.+| -+.+-+|+.||++.|-|...-| .|.|||+-+||-|++.+|. +|.+ .-++..+.-.+...++
T Consensus 60 ~e~~--qLq~~F~~~YP~esPqVmF~~~------~P~HPHiYSNGHICL~iL~d~WsP-Amsv~SvClSIlSMLS 125 (161)
T KOG0427|consen 60 NETY--QLQVEFPEHYPMESPQVMFVGP------APLHPHIYSNGHICLDILYDSWSP-AMSVQSVCLSILSMLS 125 (161)
T ss_pred CcEE--EEEEecCCCCCCCCCeEEEecC------CCCCCceecCCeEEEEeecccCCc-chhhHHHHHHHHHHHc
Confidence 6664 5567789999999887665514 2789999999999999987 8986 5555555444444443
No 21
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.023 Score=49.07 Aligned_cols=75 Identities=15% Similarity=0.260 Sum_probs=51.3
Q ss_pred eEEEEEEeeeec------CCCCCeeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccc---------
Q 047127 63 NLFKVSGCFHVS------QSTPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQ--------- 127 (322)
Q Consensus 63 ~Ll~l~Gtipv~------g~~y~iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~--------- 127 (322)
+++.+.=.|-.. |.- +--.+-+|.+||+.||.+-.. + . -=||+|+.+|+|+.-+|+
T Consensus 34 dif~WeV~i~gppdTlYeGG~--FkA~m~FP~dYP~sPP~~rF~-s--~----mwHPNvy~~G~vCISILH~pgdD~~gy 104 (171)
T KOG0425|consen 34 DIFEWEVAIIGPPDTLYEGGF--FKAHMKFPQDYPLSPPTFRFT-S--K----MWHPNVYEDGDVCISILHPPGDDPSGY 104 (171)
T ss_pred ceeEEEEEEEcCCCccccCce--eEEEEeCcccCCCCCCceeee-h--h----hcCCCcCCCCCEEEEeecCCCCCcccC
Confidence 566655555333 332 667788999999999999887 3 2 348999999999987775
Q ss_pred -----cccCCCCCHHHHHHHHHHhh
Q 047127 128 -----TWSYPGYNLNDLVHNLVQIF 147 (322)
Q Consensus 128 -----~W~~~~s~L~~lv~~l~~~f 147 (322)
+|.+ ..|.-.++-.++..+
T Consensus 105 E~~~erW~P-v~tvetIllSiIsmL 128 (171)
T KOG0425|consen 105 ELPSERWLP-VQTVETILLSIISML 128 (171)
T ss_pred CChhhccCC-ccchhHhHHHHHHHH
Confidence 3553 455555555555544
No 22
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.28 Score=41.24 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=45.3
Q ss_pred eeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceecccccc
Q 047127 62 VNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQT 128 (322)
Q Consensus 62 ~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~~ 128 (322)
.+.+.+.+.|.-. |..|. +|-.+-+|.+||..||..-.. + +| -||++-++|+|+..+|+.
T Consensus 32 dnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ft-c--~~----fHPNiy~dG~VCISILHa 95 (165)
T KOG0426|consen 32 DNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFT-C--EM----FHPNIYPDGRVCISILHA 95 (165)
T ss_pred cceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeee-c--cc----ccCcccCCCeEEEEEeeC
Confidence 4677777777544 22221 899999999999999988887 4 33 389999999999888763
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=88.25 E-value=1 Score=49.53 Aligned_cols=73 Identities=16% Similarity=0.348 Sum_probs=58.6
Q ss_pred eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccccccC--------CCCCHHHHHHHHHHhhccCC
Q 047127 80 IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSY--------PGYNLNDLVHNLVQIFSHDH 151 (322)
Q Consensus 80 iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~~W~~--------~~s~L~~lv~~l~~~f~~~p 151 (322)
+++.|.+|..||..||.|-.. -+.+..+.|+ . ..+|+|++-.|-.|.. ..+.|..++..++.....+.
T Consensus 331 f~Fdiq~P~~yPa~pp~v~~l-t~~~~R~nPN-l--Yn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e~ 406 (1101)
T KOG0895|consen 331 FLFDIQFPDTYPAVPPHVKYL-TGGGVRLNPN-L--YNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNEE 406 (1101)
T ss_pred eeeEeecCCCCCCCCceeEEe-eccceeecCC-c--ccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcccC
Confidence 779999999999999999887 6656666566 3 4489999888776653 34899999999999988887
Q ss_pred CCCcC
Q 047127 152 PLIYY 156 (322)
Q Consensus 152 Pl~~~ 156 (322)
|-+-.
T Consensus 407 Py~ne 411 (1101)
T KOG0895|consen 407 PYFNE 411 (1101)
T ss_pred ccccc
Confidence 77754
No 24
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.17 E-value=0.43 Score=41.86 Aligned_cols=53 Identities=21% Similarity=0.505 Sum_probs=41.8
Q ss_pred eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccc-cccCCCCCHHHHH
Q 047127 80 IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQ-TWSYPGYNLNDLV 140 (322)
Q Consensus 80 iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~-~W~~~~s~L~~lv 140 (322)
+-+.+-|-.+||.+||--|.. -+--||+|.+||.|+.--|. +|++ .-.+-.++
T Consensus 59 FRmKL~L~kDFP~sPPKgYFl-------TKIFHPNVaaNGEICVNtLKkDW~p-~LGirHvL 112 (223)
T KOG0423|consen 59 FRMKLALSKDFPHSPPKGYFL-------TKIFHPNVAANGEICVNTLKKDWNP-SLGIRHVL 112 (223)
T ss_pred eeehhhhcCCCCCCCCcceee-------eeeccCCcccCceehhhhhhcccCc-ccchhhHh
Confidence 677888999999999999886 24568999999999987776 9995 44444433
No 25
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=87.88 E-value=4.4 Score=34.41 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=27.7
Q ss_pred hhHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 047127 257 AESKAELEGSAADEAIEDVIYALDKALERGVVSFDSYIRQVRILARE 303 (322)
Q Consensus 257 ~l~~QLlel~Aed~AieDtIy~L~~aL~~g~I~ld~flK~vR~LaRe 303 (322)
.+.+.|=..+++-..-.|. |.+.|-.|.+++|.||++=+..=..
T Consensus 96 ~l~~~L~~~~~e~eeeSe~---lae~fl~g~~d~~~Fl~~f~~~R~~ 139 (150)
T PF07200_consen 96 ALLARLQAAASEAEEESEE---LAEEFLDGEIDVDDFLKQFKEKRKL 139 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HC-S-SSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 3455555555554444444 4777788999999999988865433
No 26
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=87.48 E-value=2 Score=39.25 Aligned_cols=86 Identities=19% Similarity=0.332 Sum_probs=61.8
Q ss_pred ceeecCCCCceeEEEEEEeeeec-----CCCCCeeEEEeecccCCCC---CCEEEEecCCCCCcccCCCCccCCC-Ccee
Q 047127 52 DTFTHNDGTAVNLFKVSGCFHVS-----QSTPPIHFTLWLHENYPSM---APMAFIVSSNSMYPIRQNHPFVSPC-GTIT 122 (322)
Q Consensus 52 ~~~t~~dG~~~~Ll~l~Gtipv~-----g~~y~iPi~Iwlp~~yP~~---pP~v~v~~pt~~m~I~~~h~~Vd~~-G~v~ 122 (322)
..|..+.- .+-|.+.|-|-|. |.. +-++|.||++||.. |-+||=. + .-||+|++. |...
T Consensus 38 gIyviPSy--an~l~WFGViFvr~GiyaggV--FRFtIliPdnfPdd~dlPrvvF~q-~-------vfHP~icp~skeLd 105 (258)
T KOG0429|consen 38 GIYVIPSY--ANKLLWFGVIFVRKGIYAGGV--FRFTILIPDNFPDDSDLPRVVFEQ-S-------VFHPLICPKSKELD 105 (258)
T ss_pred ceEEcccc--cccceEEEEEEEecccccCce--EEEEEEcCccCCCcCCCCeEEeec-c-------ccccccCCCcccee
Confidence 34665543 3456789999887 554 77899999999944 4444443 2 448999876 4333
Q ss_pred -ccccccccCCCCCHHHHHHHHHHhhcc
Q 047127 123 -TPYLQTWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 123 -~pyL~~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
.-.+..|......|-.++..++.+|..
T Consensus 106 l~raf~eWRk~ehhiwqvL~ylqriF~d 133 (258)
T KOG0429|consen 106 LNRAFPEWRKEEHHIWQVLVYLQRIFYD 133 (258)
T ss_pred HhhhhhhhhccccHHHHHHHHHHHHhcC
Confidence 456677998889999999999999864
No 27
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.44 E-value=4.6 Score=39.31 Aligned_cols=57 Identities=25% Similarity=0.171 Sum_probs=42.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCccc
Q 047127 183 YDMGALQARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDPKA 239 (322)
Q Consensus 183 ~~l~~~~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~~~~ 239 (322)
.....++.+.+++++.+...|++|+++++.|..-+++|....+.|++.+..++..++
T Consensus 214 a~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niD 270 (365)
T KOG2391|consen 214 AVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNID 270 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhH
Confidence 334445667788888888888888888888888888888888888877777766543
No 28
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=85.16 E-value=4.6 Score=34.17 Aligned_cols=92 Identities=13% Similarity=0.222 Sum_probs=67.5
Q ss_pred CCCCccccceeecCCCCceeEEEEEEeeeec------CCCCCeeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCC
Q 047127 44 YPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS------QSTPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSP 117 (322)
Q Consensus 44 y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~------g~~y~iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~ 117 (322)
-+.+.+.+..|-.+|...-.|....|+|--. |..|+ +.|-==..||..||.|+.. - +.+-+.|++
T Consensus 18 ~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiys--LKI~Cgp~YPe~PP~vrf~-t------kinm~gvn~ 88 (138)
T KOG0896|consen 18 EKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYS--LKIECGPKYPELPPTVRFG-T------KINMNGVNS 88 (138)
T ss_pred cccccCceeeccccCCCcceEeeeccceeCCCCcccccceee--EEEecCCCCCCCCceeEEE-E------Eeeeccccc
Confidence 5678888888988888888999999999433 66655 4455678999999999965 2 222234555
Q ss_pred CC-ce---eccccccccCCCCCHHHHHHHHHH
Q 047127 118 CG-TI---TTPYLQTWSYPGYNLNDLVHNLVQ 145 (322)
Q Consensus 118 ~G-~v---~~pyL~~W~~~~s~L~~lv~~l~~ 145 (322)
++ .| .++.|.+|.. .+++-.++..+..
T Consensus 89 ~~g~Vd~~~i~~L~~W~~-~y~~~~vl~~lr~ 119 (138)
T KOG0896|consen 89 SNGVVDPRDITVLARWQR-SYSIKMVLGQLRK 119 (138)
T ss_pred CCCccCccccchhhcccc-cchhhHHHHhhhH
Confidence 54 33 2688999996 7788888888775
No 29
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=81.36 E-value=2.1 Score=35.26 Aligned_cols=61 Identities=23% Similarity=0.450 Sum_probs=45.8
Q ss_pred CCCeeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccc--cccCCCCCHHHHHHHHH
Q 047127 77 TPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQ--TWSYPGYNLNDLVHNLV 144 (322)
Q Consensus 77 ~y~iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~--~W~~~~s~L~~lv~~l~ 144 (322)
+-||-+.+-++++||+.||.+-|.-|- -.+ .+|-.+|.|++-.|. .|.. .|.+-..+-.+.
T Consensus 10 te~ill~~~f~~~fp~~ppf~rvv~p~-----~~~-Gyvl~ggAIcmellt~qgwss-ay~Ve~vi~qia 72 (122)
T KOG0897|consen 10 TENILLLDIFDDNFPFMPPFPRVVKPL-----EDE-GYVLEGGAICMELLTKQGWSS-AYEVERVIMQIA 72 (122)
T ss_pred CceeEeeeecccCCCCCCCcceeeeec-----ccC-CEEecchhhHHHHHccccccc-hhhHHHHHHHHH
Confidence 347888999999999999999998442 123 688999999988887 8986 666555444333
No 30
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.64 E-value=5.8 Score=36.26 Aligned_cols=77 Identities=13% Similarity=0.126 Sum_probs=43.4
Q ss_pred CCCceeEEEEEEee--eecCCCCCeeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceecccc----ccccC
Q 047127 58 DGTAVNLFKVSGCF--HVSQSTPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYL----QTWSY 131 (322)
Q Consensus 58 dG~~~~Ll~l~Gti--pv~g~~y~iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL----~~W~~ 131 (322)
|..-+-=.||.|.= |..|.-|. =.+.+|.+||+.||-++.. -||.++. .|-|+++..- +.|++
T Consensus 32 ~nILEWHYvl~GpedTPy~GG~Yh--Gkl~FP~eyP~KPPaI~Mi--------TPNGRFk-tntRLCLSiSDfHPdsWNP 100 (244)
T KOG0894|consen 32 NNILEWHYVLRGPEDTPYYGGYYH--GKLIFPPEYPFKPPAITMI--------TPNGRFK-TNTRLCLSISDFHPDSWNP 100 (244)
T ss_pred cceeeeEEEeeCCCCCCccCceee--eEEeCCCCCCCCCCeeEEE--------CCCCcee-cCceEEEeccccCcCcCCC
Confidence 33333445677742 33355543 3568999999999999986 2443433 3444443322 48885
Q ss_pred C---CCCHHHHHHHHHH
Q 047127 132 P---GYNLNDLVHNLVQ 145 (322)
Q Consensus 132 ~---~s~L~~lv~~l~~ 145 (322)
. ++=|.+|+.-|.+
T Consensus 101 ~WsVStILtGLlSFM~e 117 (244)
T KOG0894|consen 101 GWSVSTILTGLLSFMTE 117 (244)
T ss_pred cccHHHHHHHHHHHHhc
Confidence 2 2234555555544
No 31
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=73.83 E-value=4 Score=31.89 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.3
Q ss_pred CeeEEEeecccCCCCCCEEEEe
Q 047127 79 PIHFTLWLHENYPSMAPMAFIV 100 (322)
Q Consensus 79 ~iPi~Iwlp~~yP~~pP~v~v~ 100 (322)
.+-+.|.+|.+||..+|.+++.
T Consensus 42 ~~~l~~~~p~~YP~~~P~i~~~ 63 (107)
T smart00591 42 SLTLQVKLPENYPDEAPPISLL 63 (107)
T ss_pred EEEEEEECCCCCCCCCCCeEEE
Confidence 4889999999999999999997
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=73.36 E-value=19 Score=28.17 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=18.8
Q ss_pred CCCCeeEEEeecccCCCCCCEEEEe
Q 047127 76 STPPIHFTLWLHENYPSMAPMAFIV 100 (322)
Q Consensus 76 ~~y~iPi~Iwlp~~yP~~pP~v~v~ 100 (322)
....+-+.|-+|.+||..+|.+.|.
T Consensus 47 ~~~~~~l~~~~p~~YP~~~P~i~l~ 71 (113)
T PF05773_consen 47 SFPSVTLHFTLPPGYPESPPKISLE 71 (113)
T ss_dssp TSEEEEEEEEE-SSTTSS--EEEEE
T ss_pred cceeEEEEEeCCCcCCCcCCEEEEE
Confidence 3345889999999999999999998
No 33
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=72.43 E-value=19 Score=33.38 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=8.4
Q ss_pred HHHHHHHHhcCCCCHH
Q 047127 276 IYALDKALERGVVSFD 291 (322)
Q Consensus 276 Iy~L~~aL~~g~I~ld 291 (322)
|..|...+.+..++..
T Consensus 133 l~~L~~~l~~~dv~~~ 148 (251)
T PF11932_consen 133 LARLRAMLDDADVSLA 148 (251)
T ss_pred HHHHHHhhhccCCCHH
Confidence 4455555555555444
No 34
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=71.89 E-value=13 Score=30.32 Aligned_cols=50 Identities=18% Similarity=0.100 Sum_probs=30.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCc
Q 047127 188 LQARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDP 237 (322)
Q Consensus 188 ~~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~~ 237 (322)
-++..+.+++.....+.+|.+.++.|+.....|..+.....+.+.++..+
T Consensus 17 ~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqak 66 (107)
T PF09304_consen 17 RLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAK 66 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666666666666666666665555544
No 35
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=70.66 E-value=7.5 Score=27.58 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=27.1
Q ss_pred hhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 047127 269 DEAIEDVIYALDKALERGVVSFDSYIRQVRILA 301 (322)
Q Consensus 269 d~AieDtIy~L~~aL~~g~I~ld~flK~vR~La 301 (322)
|.-=+.++..|+.++..|+|++++|=.++-...
T Consensus 5 d~dR~~~~~~L~~a~a~GrL~~~Ef~~R~~~a~ 37 (53)
T PF08044_consen 5 DADRERAVDLLRAAFAEGRLSLDEFDERLDAAY 37 (53)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 334467899999999999999999988876543
No 36
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=70.11 E-value=29 Score=33.01 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=10.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 047127 167 LVSKREALDRFSGMLHYDMGA 187 (322)
Q Consensus 167 ~~~~~~l~~~~~~~L~~~l~~ 187 (322)
.+.|.-.+..+..||++..+.
T Consensus 63 LQQKEV~iRHLkakLkes~~~ 83 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENR 83 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555554433
No 37
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=69.74 E-value=11 Score=23.55 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 047127 272 IEDVIYALDKALERGVVSFDSYIRQVRIL 300 (322)
Q Consensus 272 ieDtIy~L~~aL~~g~I~ld~flK~vR~L 300 (322)
|.|.|..|.+.+.+|.||=++|-+.-+.|
T Consensus 1 ~~~~L~~L~~l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 1 IEDRLEKLKELYDKGEISEEEYEQKKARL 29 (31)
T ss_pred ChHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 46889999999999999999998876544
No 38
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=69.72 E-value=17 Score=30.34 Aligned_cols=83 Identities=13% Similarity=0.193 Sum_probs=48.2
Q ss_pred eEEEEEEeeeec-CCCCC---eeEEEeecccCCCCC-CEEEEecCCC----CCcccCCCCcc--CCCCcee---cccccc
Q 047127 63 NLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMA-PMAFIVSSNS----MYPIRQNHPFV--SPCGTIT---TPYLQT 128 (322)
Q Consensus 63 ~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~p-P~v~v~~pt~----~m~I~~~h~~V--d~~G~v~---~pyL~~ 128 (322)
..|++.| .|+- | .|| +-|.|-||..||..+ .++||. |.- +..| |+...+ .-+|+.. .--.+.
T Consensus 25 ~~lii~~-~~LP~G-~y~~~~~dili~iP~gYP~~~~DmfY~~-P~L~~~~G~~i-P~~~~~~~~~~G~~wQrWSRH~~~ 100 (122)
T PF14462_consen 25 RWLIIKG-YPLPEG-KYNHNEVDILILIPPGYPDAPLDMFYVY-PPLKLADGGPI-PNAAEVTQTFDGRTWQRWSRHNNP 100 (122)
T ss_pred cEEEEeC-CcCCCC-ccCccceEEEEECCCCCCCCCCCcEEEC-CceEccCCCcC-CchhcchhhcCCeeeeeecCCCCC
Confidence 3444666 2333 3 133 789999999999885 477787 742 2333 211111 2336644 111667
Q ss_pred ccCCCCCHHHHHHHHHHhhcc
Q 047127 129 WSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 129 W~~~~s~L~~lv~~l~~~f~~ 149 (322)
|++..-+|...+.-+...+.+
T Consensus 101 W~P~~D~l~T~l~~v~~~L~~ 121 (122)
T PF14462_consen 101 WRPGVDDLWTHLARVEHALAK 121 (122)
T ss_pred CCCCCCcHHHHHHHHHHHHhh
Confidence 877666888777777665543
No 39
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=68.84 E-value=46 Score=26.44 Aligned_cols=48 Identities=23% Similarity=0.149 Sum_probs=30.5
Q ss_pred HhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHcCCcc
Q 047127 191 RTEEETEALLTIQVELKNRA---RKLKETVVELAGKADVLTNWLKVNGDPK 238 (322)
Q Consensus 191 ~~~~e~~~L~~~q~~L~~~~---~~Le~~~~~l~~~~~~L~~~~~e~~~~~ 238 (322)
.....++.|.....+|+..- ..++..++.|+..+..|.+|..+++.+.
T Consensus 46 ~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 46 GLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKF 96 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555554443 3455588888888888888888877653
No 40
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=67.80 E-value=21 Score=26.80 Aligned_cols=41 Identities=15% Similarity=0.363 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047127 273 EDVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLVKL 314 (322)
Q Consensus 273 eDtIy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Rali~Ki 314 (322)
-+.|...-+-|++++|+=|+|+|.+|...-+|-+.- .|.++
T Consensus 27 ~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD~lL~s-~I~~l 67 (70)
T PF12174_consen 27 MDLLQKHYEEFKKKKISREEFVRKLRQIVGDQLLRS-AIKSL 67 (70)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHHHh
Confidence 567777788899999999999999999999886544 34443
No 41
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=66.13 E-value=54 Score=31.41 Aligned_cols=48 Identities=25% Similarity=0.285 Sum_probs=21.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Q 047127 187 ALQARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVN 234 (322)
Q Consensus 187 ~~~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~ 234 (322)
+.+++..+|.+++..--..|.++-+.|+++.+++..+|.-|++.+.+.
T Consensus 241 RYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 241 RYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333444444444444455555555555555443
No 42
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=66.08 E-value=78 Score=29.53 Aligned_cols=53 Identities=21% Similarity=0.155 Sum_probs=23.0
Q ss_pred hhHHHHHHhhhhhhhhHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHH
Q 047127 257 AESKAELEGSAADEAIEDVIYALDKALERG-------VVSFDSYIRQVRILAREQFFHRD 309 (322)
Q Consensus 257 ~l~~QLlel~Aed~AieDtIy~L~~aL~~g-------~I~ld~flK~vR~LaReQF~~Ra 309 (322)
.+-.+|-++.-+...+++=|..|...+.+- .-.++.=++.+|.=+.+-+-.|.
T Consensus 107 ~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~ 166 (239)
T COG1579 107 SLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKRE 166 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443332 23444444555544444444443
No 43
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=64.13 E-value=41 Score=33.31 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCccc
Q 047127 201 TIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDPKA 239 (322)
Q Consensus 201 ~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~~~~ 239 (322)
.++.+|++.++.|+.....+.+|...+..+++.++..+.
T Consensus 347 ~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri~ 385 (388)
T PF04912_consen 347 DLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERIA 385 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555566666666677777777777777766543
No 44
>PF13041 PPR_2: PPR repeat family
Probab=61.06 E-value=30 Score=23.18 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=40.4
Q ss_pred cCChhHHHHHHhhhhhhhhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Q 047127 254 AIDAESKAELEGSAADEAIEDVIYALDKALERGV-VSFDSYIRQVRILAR 302 (322)
Q Consensus 254 ~~~~l~~QLlel~Aed~AieDtIy~L~~aL~~g~-I~ld~flK~vR~LaR 302 (322)
|....+|-|+..+++..-.++++..+.++.++|. -+.-+|---++.++|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 3456789999999999999999999999999995 577777766666553
No 45
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=58.37 E-value=1.1e+02 Score=25.67 Aligned_cols=9 Identities=11% Similarity=0.184 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 047127 225 DVLTNWLKV 233 (322)
Q Consensus 225 ~~L~~~~~e 233 (322)
+.+...++.
T Consensus 106 ~~v~~~V~~ 114 (126)
T PF07889_consen 106 DSVQQMVEG 114 (126)
T ss_pred HHHHHHHHH
Confidence 333333333
No 46
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=56.90 E-value=63 Score=30.94 Aligned_cols=48 Identities=21% Similarity=0.089 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 047127 178 SGMLHYDMGALQARTEEETEALLTIQVELKNRARKLKETVVELAGKAD 225 (322)
Q Consensus 178 ~~~L~~~l~~~~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~ 225 (322)
..+.+++=.+..+....|++.|...+++|+.+-..||++|++++.-+.
T Consensus 239 AtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 239 ATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777778888999999999999999999999999999976443
No 47
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=55.50 E-value=41 Score=32.91 Aligned_cols=79 Identities=20% Similarity=0.138 Sum_probs=35.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCccccccccCCCcccccccCChhHHHHHHhhhhh
Q 047127 191 RTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAAD 269 (322)
Q Consensus 191 ~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~~~~~~~~~~~dide~v~~~~~l~~QLlel~Aed 269 (322)
...+-.++|.....++...-.++.+....+....+.+..++..+......+....++++.++...+.+.++.-.++++.
T Consensus 184 ~l~~~~~~ln~~~~~i~~~i~~l~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~ll~~~ 262 (359)
T COG1463 184 NLAQFTDALNARDGDIGALIANLNQLLDSLAAASDQLDRLLDNLATLTAALAARRDALDDALAALSALAATVNDLLAEN 262 (359)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333443333333333334444444444444444444444333222111122356666666666666666666654
No 48
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=55.08 E-value=2.6e+02 Score=28.97 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHH
Q 047127 269 DEAIEDVIYALDKALERG----VVSFDSYIRQVRILARE 303 (322)
Q Consensus 269 d~AieDtIy~L~~aL~~g----~I~ld~flK~vR~LaRe 303 (322)
-+++-=++..|..+|.+| ..+|...|+.+|.++.+
T Consensus 407 ~~~l~~a~~~l~~~l~~~~~~~~~p~~~el~~l~~~~~~ 445 (582)
T PF09731_consen 407 AQQLWLAVDALKSALDSGNAGSPRPFEDELRALKELAPD 445 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHhCCC
Confidence 344555666777777777 46777777777777665
No 49
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=53.66 E-value=1.1e+02 Score=24.10 Aligned_cols=41 Identities=12% Similarity=0.129 Sum_probs=28.1
Q ss_pred hhHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 047127 257 AESKAELEGSAADEAIEDVIYALDKALERGVVSFDSYIRQVRI 299 (322)
Q Consensus 257 ~l~~QLlel~Aed~AieDtIy~L~~aL~~g~I~ld~flK~vR~ 299 (322)
.+..|+-.+-..-..+..++.+..++|..| +--.||...+.
T Consensus 76 ~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~--~~~e~L~~~~~ 116 (127)
T smart00502 76 VLEQQLESLTQKQEKLSHAINFTEEALNSG--DPTELLLSKKL 116 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CChHHHHHHHH
Confidence 345566667777778889999999999987 33344544443
No 50
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=53.40 E-value=14 Score=28.08 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=28.3
Q ss_pred CccCCCCceeccccccccCCCCCHHHHHHHHHHhhcc
Q 047127 113 PFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 113 ~~Vd~~G~v~~pyL~~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
--|+++|.|.+|++-.-.-.+-++.++-+.+...+.+
T Consensus 33 ~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 33 YTVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp EE--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHTT
T ss_pred eEECCCCcEeecccceEEECCCCHHHHHHHHHHHHHH
Confidence 3489999999999998887788999999999888877
No 51
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=52.51 E-value=13 Score=34.63 Aligned_cols=97 Identities=16% Similarity=0.306 Sum_probs=49.9
Q ss_pred HHHhCCCCccccceeecCCCCceeEEEEEEeeee----c--CCCCCeeEEEeecccCCCCCCEEEEecCCCCCcccCCCC
Q 047127 40 LLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHV----S--QSTPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHP 113 (322)
Q Consensus 40 ~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv----~--g~~y~iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~ 113 (322)
+++.-..|+-.++-|..- --..+|+.+.=||-- . |..|. =.|.||-+||+.||-+.+--|..-..+... =
T Consensus 16 lmkEa~El~~Ptd~yha~-plEdNlFEWhFtiRGp~dtdFeGGiYH--GRI~lPadYPmKPPs~iLLTpNGRFE~nkK-i 91 (314)
T KOG0428|consen 16 LMKEAAELKDPTDHYHAQ-PLEDNLFEWHFTIRGPPDTDFEGGIYH--GRIVLPADYPMKPPSIILLTPNGRFEVNKK-I 91 (314)
T ss_pred HHHHHHHhcCchhhhhhc-cchhceeeEEEEeeCCCCCCccCceee--eeEecCCCCCCCCCeEEEEcCCCceeeCce-E
Confidence 333333344444544321 112356666555522 2 66655 467899999999998777524332333222 2
Q ss_pred ccCCCCceeccccccccCCCCCHHHHHHHHHH
Q 047127 114 FVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQ 145 (322)
Q Consensus 114 ~Vd~~G~v~~pyL~~W~~~~s~L~~lv~~l~~ 145 (322)
+..-+| ||| ..|.+ +-++...+-.|+.
T Consensus 92 CLSISg--yHP--EtWqP-SWSiRTALlAlIg 118 (314)
T KOG0428|consen 92 CLSISG--YHP--ETWQP-SWSIRTALLALIG 118 (314)
T ss_pred EEEecC--CCc--cccCc-chhHHHHHHHHHc
Confidence 233444 455 35663 4455555544544
No 52
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=51.25 E-value=1.2e+02 Score=23.98 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=21.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 047127 189 QARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLK 232 (322)
Q Consensus 189 ~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~ 232 (322)
++.+.+++.-|...+......-..+++....+....+.|.+...
T Consensus 16 l~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~ 59 (99)
T PF10046_consen 16 LEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYE 59 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555544444444555555555554444444443
No 53
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=51.01 E-value=73 Score=29.78 Aligned_cols=15 Identities=13% Similarity=-0.009 Sum_probs=9.7
Q ss_pred CeeEEEeecccCCCC
Q 047127 79 PIHFTLWLHENYPSM 93 (322)
Q Consensus 79 ~iPi~Iwlp~~yP~~ 93 (322)
.+-+.+-+...||..
T Consensus 70 ~v~v~~~i~~~~~i~ 84 (291)
T TIGR00996 70 GARVTFSLDRGVTIP 84 (291)
T ss_pred EEEEEEEecCCcccC
Confidence 366777777777643
No 54
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=50.06 E-value=95 Score=28.66 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 047127 194 EETEALLTIQVELKNRARKLKETVVELAGKADVL 227 (322)
Q Consensus 194 ~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L 227 (322)
++++.+.....+|.+..+.|+.++..++..++.+
T Consensus 42 ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l 75 (251)
T PF11932_consen 42 KRIDQWDDEKQELLAEYRQLEREIENLEVYNEQL 75 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 55
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=49.85 E-value=60 Score=30.52 Aligned_cols=23 Identities=4% Similarity=0.024 Sum_probs=14.9
Q ss_pred CcccccccCChhHHHHHHhhhhh
Q 047127 247 RVEDAFEAIDAESKAELEGSAAD 269 (322)
Q Consensus 247 dide~v~~~~~l~~QLlel~Aed 269 (322)
+++.++...+.++++.-+++++.
T Consensus 95 ~L~~lL~~~~~~a~~~~~~l~~n 117 (267)
T PF11887_consen 95 QLDALLLSATGLADTGTDFLADN 117 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666666666554
No 56
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=48.42 E-value=1.2e+02 Score=22.91 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q 047127 210 ARKLKETVVELAGKADVLTNWLK 232 (322)
Q Consensus 210 ~~~Le~~~~~l~~~~~~L~~~~~ 232 (322)
...|...+..|..++..|.+.++
T Consensus 44 ~a~L~~qv~~Ls~qv~~Ls~ql~ 66 (70)
T PF04899_consen 44 NAALSEQVNNLSQQVQRLSEQLE 66 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544444444443
No 57
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=48.21 E-value=1.3e+02 Score=30.85 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=30.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC
Q 047127 189 QARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGD 236 (322)
Q Consensus 189 ~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~ 236 (322)
.++.+++++.|.+.-+.+.+..+.++++++++++++..|++.++....
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344555566653333334466677888888888888888888754433
No 58
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=48.08 E-value=1.8e+02 Score=28.61 Aligned_cols=26 Identities=12% Similarity=0.383 Sum_probs=17.2
Q ss_pred HHHHHHhhhh-hhhhHHHHHHHHHHHhcC
Q 047127 259 SKAELEGSAA-DEAIEDVIYALDKALERG 286 (322)
Q Consensus 259 ~~QLlel~Ae-d~AieDtIy~L~~aL~~g 286 (322)
.+|.| .++ +.-..|.+|-+...|+-+
T Consensus 198 kRQ~y--I~~LEsKVqDLm~EirnLLQle 224 (401)
T PF06785_consen 198 KRQAY--IGKLESKVQDLMYEIRNLLQLE 224 (401)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 34444 344 667889898888877654
No 59
>PF07877 DUF1661: Protein of unknown function (DUF1661); InterPro: IPR012456 The proteins in this entry have not been characterised.
Probab=47.90 E-value=13 Score=23.52 Aligned_cols=18 Identities=33% Similarity=0.185 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 047127 300 LAREQFFHRDLLVKLEVK 317 (322)
Q Consensus 300 LaReQF~~Rali~Ki~~~ 317 (322)
|+||.|..||.-+|+...
T Consensus 1 lare~k~sRakTKKfs~h 18 (31)
T PF07877_consen 1 LAREVKNSRAKTKKFSRH 18 (31)
T ss_pred ChHHHHhHHHHHHHHHHH
Confidence 689999999999999754
No 60
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=46.40 E-value=1.3e+02 Score=22.75 Aligned_cols=49 Identities=24% Similarity=0.243 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047127 173 ALDRFSGMLHYDMGALQARTEEETEALLTIQVELKNRARKLKETVVELAG 222 (322)
Q Consensus 173 l~~~~~~~L~~~l~~~~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~ 222 (322)
+.+.+..|+...+. ..+..+.+++.|..-+.+|......|+++-..+..
T Consensus 5 ~l~~LE~ki~~ave-ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 5 LLEQLEEKIQQAVE-TIALLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444444444332 23345566666666655555555555555555543
No 61
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=46.32 E-value=96 Score=24.20 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=22.6
Q ss_pred ChhHHHHHHhhhhhhhhHHHHHHHHHHH
Q 047127 256 DAESKAELEGSAADEAIEDVIYALDKAL 283 (322)
Q Consensus 256 ~~l~~QLlel~Aed~AieDtIy~L~~aL 283 (322)
..+-.+.=+|++|...+|..|-.|.+-+
T Consensus 50 ~~lp~~~keLL~EIA~lE~eV~~LE~~v 77 (88)
T PF14389_consen 50 SSLPKKAKELLEEIALLEAEVAKLEQKV 77 (88)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677899999999999999887644
No 62
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=46.29 E-value=2.1e+02 Score=32.92 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047127 271 AIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLVKLEVK 317 (322)
Q Consensus 271 AieDtIy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Rali~Ki~~~ 317 (322)
.+.++..-+-+||+......-.--+.++.-.+.+=..+-++.||...
T Consensus 1560 ~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~ 1606 (1758)
T KOG0994|consen 1560 DVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEE 1606 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45566666666666654444444455566666666666666666543
No 63
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=45.56 E-value=1.1e+02 Score=24.83 Aligned_cols=98 Identities=19% Similarity=0.225 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCccccccccCCCcccccccCChhHHHHHHhhhhhhhhHHHHHHHHH
Q 047127 202 IQVELKNRARKLKETVVELAGKADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAADEAIEDVIYALDK 281 (322)
Q Consensus 202 ~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~~~~~~~~~~~dide~v~~~~~l~~QLlel~Aed~AieDtIy~L~~ 281 (322)
....+......|+.....|.........++.+++.....+.. ..+.-.-...-....|-.+.++..++.--|.-+.+
T Consensus 26 ~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k---~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~ 102 (126)
T PF13863_consen 26 REEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEK---RAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEE 102 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566677777777777777888888877765422110 11111111122233344444555555555555555
Q ss_pred HHhcCCCCHHHHHHHHHHHHHH
Q 047127 282 ALERGVVSFDSYIRQVRILARE 303 (322)
Q Consensus 282 aL~~g~I~ld~flK~vR~LaRe 303 (322)
.+..- -.+..||..|-.-+.+
T Consensus 103 ~l~~~-~~Y~~fL~~v~~~~~e 123 (126)
T PF13863_consen 103 KLEEY-KKYEEFLEKVVPKSPE 123 (126)
T ss_pred HHHHH-HHHHHHHHHhcccccC
Confidence 44433 3566677666554443
No 64
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.05 E-value=99 Score=34.29 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHH----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 047127 179 GMLHYDMGALQA----------RTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLK 232 (322)
Q Consensus 179 ~~L~~~l~~~~~----------~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~ 232 (322)
.+|+..+-++++ ++..|++...+-..+|++-+++|.+++..++..+..|++-++
T Consensus 378 ~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 378 ARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466665554443 344555555555556666666666666666555555555443
No 65
>PRK10884 SH3 domain-containing protein; Provisional
Probab=45.03 E-value=77 Score=28.78 Aligned_cols=6 Identities=17% Similarity=-0.025 Sum_probs=2.6
Q ss_pred CCCCCe
Q 047127 75 QSTPPI 80 (322)
Q Consensus 75 g~~y~i 80 (322)
|..|.|
T Consensus 41 g~~y~I 46 (206)
T PRK10884 41 GDQYRI 46 (206)
T ss_pred CCCCce
Confidence 444443
No 66
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=44.88 E-value=1.4e+02 Score=25.35 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=14.5
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHH
Q 047127 281 KALERGVVSFDSYIRQVRILARE 303 (322)
Q Consensus 281 ~aL~~g~I~ld~flK~vR~LaRe 303 (322)
.-|+.-.+..+.|-|+|..|--+
T Consensus 101 ekl~e~d~~ae~~eRkv~~le~~ 123 (143)
T PF12718_consen 101 EKLREADVKAEHFERKVKALEQE 123 (143)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhh
Confidence 33444456778888888877543
No 67
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=44.52 E-value=1.6e+02 Score=25.32 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCC
Q 047127 211 RKLKETVVELAGKADVLTNWLKVNGD 236 (322)
Q Consensus 211 ~~Le~~~~~l~~~~~~L~~~~~e~~~ 236 (322)
+.|...+.++..++..+.+.++.+.+
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44666677777777777777766654
No 68
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=43.78 E-value=73 Score=24.04 Aligned_cols=47 Identities=28% Similarity=0.292 Sum_probs=25.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Q 047127 189 QARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNG 235 (322)
Q Consensus 189 ~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~ 235 (322)
.++...|-+.|+..+..+..--.+|...+.++...+..++..+++.+
T Consensus 14 Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 14 IAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELE 60 (74)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666555555544445555555555555555555544443
No 69
>PF13556 HTH_30: PucR C-terminal helix-turn-helix domain; PDB: 3ONQ_B.
Probab=43.57 E-value=22 Score=25.33 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=24.6
Q ss_pred CHHHHHHH---HHHHHHHHHHHHHHH----HHHHHhcCCC
Q 047127 289 SFDSYIRQ---VRILAREQFFHRDLL----VKLEVKRGFT 321 (322)
Q Consensus 289 ~ld~flK~---vR~LaReQF~~Rali----~Ki~~~~gl~ 321 (322)
++..|++. ++.-|++.|++|-++ +||.+..|++
T Consensus 4 TL~~yl~~~~n~~~tA~~L~iHrNTl~yRl~ki~~l~g~d 43 (59)
T PF13556_consen 4 TLRAYLENNGNISKTARALHIHRNTLRYRLKKIEELLGLD 43 (59)
T ss_dssp HHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCcC
Confidence 46777776 899999999998776 7888877765
No 70
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=42.52 E-value=36 Score=27.61 Aligned_cols=40 Identities=20% Similarity=0.196 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 047127 270 EAIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHRD 309 (322)
Q Consensus 270 ~AieDtIy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Ra 309 (322)
..++||+.+|.+....=.-.++..=+....+..+.=..+.
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 83 KSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777665544333444444555554444333333
No 71
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=42.40 E-value=5.1e+02 Score=28.61 Aligned_cols=125 Identities=17% Similarity=0.147 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCccccccccCC-CcccccccC
Q 047127 177 FSGMLHYDMGALQARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDPKAIGVILGD-RVEDAFEAI 255 (322)
Q Consensus 177 ~~~~L~~~l~~~~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~~~~~~~~~~~-dide~v~~~ 255 (322)
+.++|+.++...-++..-.-+.|.+.|+++.+...-|-+..+.-+.+.+.|++..+|+..--.- .++ ..+-+=.--
T Consensus 985 LnekLr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d~GV~---AD~gAeeRA~~RR 1061 (1480)
T COG3096 985 LNEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIGVR---ADSGAEERARIRR 1061 (1480)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCC---cCcchHHHHHHHH
Confidence 3345555544433333333455666666666655555555555556666666666655432000 001 111222334
Q ss_pred ChhHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047127 256 DAESKAELEGSAADEAIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLL 311 (322)
Q Consensus 256 ~~l~~QLlel~Aed~AieDtIy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Rali 311 (322)
|.++.||-+.-..-+-+|-+|-... ...|...|..|.+-|+-|-.|-.+
T Consensus 1062 DELh~~Lst~RsRr~~~EkqlT~~E-------~E~~~L~~~~rK~ErDY~~~Re~V 1110 (1480)
T COG3096 1062 DELHAQLSTNRSRRNQLEKQLTFCE-------AEMDNLTRKLRKLERDYFEMREQV 1110 (1480)
T ss_pred HHHHHHHhccHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6667776666666665555554433 245667788888888877777655
No 72
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=41.97 E-value=1.4e+02 Score=22.07 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHH
Q 047127 206 LKNRARKLKETVVELAGKADV 226 (322)
Q Consensus 206 L~~~~~~Le~~~~~l~~~~~~ 226 (322)
++.+.+..+..+..+..+++.
T Consensus 25 lE~~~~~~e~~i~~~~~~l~~ 45 (71)
T PF10779_consen 25 LEKRDAANEKDIKNLNKQLEK 45 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444433333
No 73
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=41.53 E-value=36 Score=29.71 Aligned_cols=63 Identities=21% Similarity=0.210 Sum_probs=51.8
Q ss_pred ccccCChhHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047127 251 AFEAIDAESKAELEGSAADEAIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLVKLEV 316 (322)
Q Consensus 251 ~v~~~~~l~~QLlel~Aed~AieDtIy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Rali~Ki~~ 316 (322)
..|+=..++.=|+=.+..|.-++|...-+.+..++|.+++.. -+|.|++.|.+.|++.++...
T Consensus 85 Fqcs~~DLsdii~i~f~~deel~~~~e~i~~~v~~Gn~Sl~~---lsr~l~~sp~firglAKRs~~ 147 (160)
T PF09824_consen 85 FQCSMEDLSDIIYIAFMSDEELRDYVEKIEKEVEAGNTSLSD---LSRKLGISPVFIRGLAKRSPK 147 (160)
T ss_pred eEeeHHHHHHHHheeecCHHHHHHHHHHHHHHHHcCCCcHHH---HHHHhCCCHHHHHHHHHhccC
Confidence 334445566666777888999999999999999999988765 478999999999999998754
No 74
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=41.21 E-value=2.4e+02 Score=26.26 Aligned_cols=16 Identities=13% Similarity=0.005 Sum_probs=13.2
Q ss_pred CCCCCeeEEEeecccC
Q 047127 75 QSTPPIHFTLWLHENY 90 (322)
Q Consensus 75 g~~y~iPi~Iwlp~~y 90 (322)
|+.|||-|+=.+|.+.
T Consensus 32 G~eYnITisSIiPTT~ 47 (290)
T COG4026 32 GSEYNITISSIIPTTN 47 (290)
T ss_pred cccceeEEEeeccCch
Confidence 8899999988777665
No 75
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=40.35 E-value=1.5e+02 Score=28.69 Aligned_cols=31 Identities=10% Similarity=0.102 Sum_probs=20.7
Q ss_pred CChhHHHHHHhhhhhhhhHHHHHHHHHHHhc
Q 047127 255 IDAESKAELEGSAADEAIEDVIYALDKALER 285 (322)
Q Consensus 255 ~~~l~~QLlel~Aed~AieDtIy~L~~aL~~ 285 (322)
-+.+..++++..-+..+++.-+.+...-|.+
T Consensus 101 ~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 101 YNELQLELIEFQEERDSLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777776666543
No 76
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=40.30 E-value=1.2e+02 Score=20.73 Aligned_cols=39 Identities=26% Similarity=0.226 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 047127 193 EEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWL 231 (322)
Q Consensus 193 ~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~ 231 (322)
+.+-+.|.+.-..|+..-+.|..+.+.|..++..|+..+
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555666666666666666666666666554
No 77
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=40.18 E-value=1.3e+02 Score=24.23 Aligned_cols=42 Identities=19% Similarity=0.333 Sum_probs=25.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 047127 191 RTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLK 232 (322)
Q Consensus 191 ~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~ 232 (322)
+.+++++.+.+..+++++..+.|++++..|+...+-+++.-+
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR 72 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERAR 72 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 344555555555566666667777777777765555555443
No 78
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=39.91 E-value=4.1e+02 Score=27.71 Aligned_cols=84 Identities=19% Similarity=0.141 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCccccccccCCCcccccccCChhHHHHHHhhhhhhhhHHHHHHHHHH
Q 047127 203 QVELKNRARKLKETVVELAGKADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAADEAIEDVIYALDKA 282 (322)
Q Consensus 203 q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~~~~~~~~~~~dide~v~~~~~l~~QLlel~Aed~AieDtIy~L~~a 282 (322)
|.++...-..|...-...+..+..++..+.+..+.+.+.+-.|- +++ +-+.+. ...|-|..|...
T Consensus 395 q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGl-p~~--------y~~~~~------~~~~~i~~l~~~ 459 (560)
T PF06160_consen 395 QEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGL-PED--------YLDYFF------DVSDEIEELSDE 459 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CHH--------HHHHHH------HHHHHHHHHHHH
Confidence 33333333444444444455555555555555544432222221 121 122232 345889999999
Q ss_pred HhcCCCCHHHHHHHHHHHH
Q 047127 283 LERGVVSFDSYIRQVRILA 301 (322)
Q Consensus 283 L~~g~I~ld~flK~vR~La 301 (322)
|++..|+++.--+.+....
T Consensus 460 L~~~pinm~~v~~~l~~a~ 478 (560)
T PF06160_consen 460 LNQVPINMDEVNKQLEEAE 478 (560)
T ss_pred HhcCCcCHHHHHHHHHHHH
Confidence 9999999988777776544
No 79
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=38.86 E-value=1.5e+02 Score=25.28 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHH
Q 047127 182 HYDMGALQARTEEETEALLTIQVEL----KNRARKLKETVVELAGKAD 225 (322)
Q Consensus 182 ~~~l~~~~~~~~~e~~~L~~~q~~L----~~~~~~Le~~~~~l~~~~~ 225 (322)
++.+..+-..+.+|+.+|.++-..+ ...+.++|.+.+++.+.-.
T Consensus 68 retfsNFssst~aEvqaL~S~G~sl~~kVtSLea~lEkqqQeLkAdhS 115 (138)
T PF03954_consen 68 RETFSNFSSSTLAEVQALSSQGGSLQDKVTSLEAKLEKQQQELKADHS 115 (138)
T ss_pred HHHHhcccHHHHHHHHHHHhccccHHhHcccHHHHHHHHHHHHhhhHH
Confidence 3333333346677787776643333 2233455555555554333
No 80
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=38.34 E-value=2.4e+02 Score=26.98 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047127 177 FSGMLHYDMGALQARTEEETEALLTIQVELKNRARKLKETVVELAG 222 (322)
Q Consensus 177 ~~~~L~~~l~~~~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~ 222 (322)
++..|+..+++...+++..-..|.....+..+...+||+...+++.
T Consensus 106 ~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr 151 (338)
T KOG3647|consen 106 VEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELER 151 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3345555555555444444455555555555555556665555543
No 81
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=38.19 E-value=50 Score=28.85 Aligned_cols=66 Identities=15% Similarity=0.282 Sum_probs=43.2
Q ss_pred CCeeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCC--C-----ceeccccccccCCCCCHHHHHHHHHHhhc
Q 047127 78 PPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPC--G-----TITTPYLQTWSYPGYNLNDLVHNLVQIFS 148 (322)
Q Consensus 78 y~iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~--G-----~v~~pyL~~W~~~~s~L~~lv~~l~~~f~ 148 (322)
..=++.|+++..||..+|.|+.. -. +.. .+++|+.+. | ++|....+.|.+ +.++-++|..|..=|.
T Consensus 53 ~~E~~~i~~~~~~~~~~P~v~~l-R~-dFP--~~lpH~~~~~~~~p~~lCl~~~~~~e~~~-~~g~~~~l~rl~~Wl~ 125 (162)
T PF14457_consen 53 RVERVAIVFPPDSPLSAPEVPAL-RK-DFP--GNLPHQNPGPEGEPVSLCLYEGPWSEWRP-SWGPEGFLDRLFDWLR 125 (162)
T ss_pred ccceEEEEecCCCCCCCccchhh-Hh-hCC--CCCCccCCCCCCCCccceEecCCHHHhhh-ccCHHHHHHHHHHHHH
Confidence 33588999999999999976664 21 111 113555433 2 345566677775 7788888888877665
No 82
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=37.82 E-value=75 Score=31.07 Aligned_cols=68 Identities=16% Similarity=0.333 Sum_probs=49.1
Q ss_pred EEEeeeecCCCCCeeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccccccCC-CCCHHHHHHHHHH
Q 047127 67 VSGCFHVSQSTPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSYP-GYNLNDLVHNLVQ 145 (322)
Q Consensus 67 l~Gtipv~g~~y~iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~~W~~~-~s~L~~lv~~l~~ 145 (322)
.+=.||+.|. .+--.|.+--.||..||=+.+. .+.+.. | |.+ .+|.|.+|+.. ...|+.++.+|..
T Consensus 56 F~l~IPy~~~--~l~W~viFd~~~p~~pPDfiF~-eD~~F~--p-----d~s---~l~~L~~Wd~~dp~~Ll~li~EL~~ 122 (333)
T PF06113_consen 56 FKLLIPYCGE--YLKWDVIFDAQYPEFPPDFIFG-EDDNFL--P-----DPS---KLPSLVNWDPSDPNCLLNLISELRQ 122 (333)
T ss_pred EEEEeeccCC--EEEEEEEEcCCCCCCCCCEEeC-CCcCcC--C-----Chh---hcchhhcCCCCCchHHHHHHHHHHH
Confidence 3446787776 4888999999999999998886 543322 1 322 25899999863 4578888888876
Q ss_pred hh
Q 047127 146 IF 147 (322)
Q Consensus 146 ~f 147 (322)
.+
T Consensus 123 ~Y 124 (333)
T PF06113_consen 123 LY 124 (333)
T ss_pred HH
Confidence 54
No 83
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=37.75 E-value=2.5e+02 Score=26.64 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHhhccCCCC
Q 047127 134 YNLNDLVHNLVQIFSHDHPL 153 (322)
Q Consensus 134 s~L~~lv~~l~~~f~~~pPl 153 (322)
|.|.+--..|.+.++++..+
T Consensus 127 seit~~GA~LydlL~kE~~l 146 (267)
T PF10234_consen 127 SEITQRGASLYDLLGKEVEL 146 (267)
T ss_pred HHHHHHHHHHHHHHhchHhH
Confidence 34444444555555555543
No 84
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=37.68 E-value=1.9e+02 Score=26.97 Aligned_cols=23 Identities=4% Similarity=-0.003 Sum_probs=11.4
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHH
Q 047127 281 KALERGVVSFDSYIRQVRILARE 303 (322)
Q Consensus 281 ~aL~~g~I~ld~flK~vR~LaRe 303 (322)
..|...+=+++..+.....+++.
T Consensus 248 ~~l~~~~~~l~~~l~~l~~~~~~ 270 (291)
T TIGR00996 248 DLLAENRPNLPQALANLAPVLTL 270 (291)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHH
Confidence 34444444555555555555443
No 85
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=37.55 E-value=1.7e+02 Score=24.22 Aligned_cols=13 Identities=15% Similarity=-0.130 Sum_probs=5.7
Q ss_pred cccccCChhHHHH
Q 047127 250 DAFEAIDAESKAE 262 (322)
Q Consensus 250 e~v~~~~~l~~QL 262 (322)
++-.-...|++||
T Consensus 116 dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 116 DLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444455554
No 86
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=37.52 E-value=3.7e+02 Score=28.08 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHH
Q 047127 271 AIEDVIYALDKALERGVVSFDSYI 294 (322)
Q Consensus 271 AieDtIy~L~~aL~~g~I~ld~fl 294 (322)
+.++-|..|.+.|++|.|+++.=-
T Consensus 452 ~~~~~i~~l~~~L~~g~VNm~ai~ 475 (569)
T PRK04778 452 EVSDEIEALAEELEEKPINMEAVN 475 (569)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHH
Confidence 567888999999999999888766
No 87
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=37.41 E-value=6e+02 Score=28.00 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 047127 272 IEDVIYALDKALERGVVSFDSYIRQVRILAREQ 304 (322)
Q Consensus 272 ieDtIy~L~~aL~~g~I~ld~flK~vR~LaReQ 304 (322)
+...+-.|-+||+.. ++|.|+..++..+.+-
T Consensus 641 ~r~~~~~l~~sL~~k--~ve~F~~ale~~~~~~ 671 (803)
T PLN03083 641 LSSKALALVEALEGK--RVDAFMSTLRDLAEES 671 (803)
T ss_pred HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHh
Confidence 344556677777555 6899999999888765
No 88
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=37.18 E-value=5.1e+02 Score=28.77 Aligned_cols=51 Identities=10% Similarity=0.055 Sum_probs=32.3
Q ss_pred hhHHHHHHhhhhhhhhHHHHHHHHHHHhcCC-----CCH---------HHHHHHHHHHH-HHHHHH
Q 047127 257 AESKAELEGSAADEAIEDVIYALDKALERGV-----VSF---------DSYIRQVRILA-REQFFH 307 (322)
Q Consensus 257 ~l~~QLlel~Aed~AieDtIy~L~~aL~~g~-----I~l---------d~flK~vR~La-ReQF~~ 307 (322)
.+--|+-.+.|+.+-..-++.++.+.|+... +++ -.-+|.|+.|+ +.|||.
T Consensus 180 ~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~lt 245 (1265)
T KOG0976|consen 180 EFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLT 245 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Confidence 3445667777777777777777777766543 222 34677888875 566664
No 89
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.11 E-value=2e+02 Score=27.30 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=16.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 047127 190 ARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNW 230 (322)
Q Consensus 190 ~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~ 230 (322)
+...++++.+..-..+++..-..++.++..++.+|+.+++.
T Consensus 55 ~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 55 ESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433444333333444444444444444333
No 90
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=36.01 E-value=98 Score=31.32 Aligned_cols=74 Identities=12% Similarity=0.116 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCccccccccCCCcccccccCChhHHHHHHhhhhhhhhHHHHHH
Q 047127 205 ELKNRARKLKETVVELAGKADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAADEAIEDVIYA 278 (322)
Q Consensus 205 ~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~~~~~~~~~~~dide~v~~~~~l~~QLlel~Aed~AieDtIy~ 278 (322)
||-.--.++..+.+.|++.+++|.-++.++|.+.+++...+.+.-.+|-..+..-.||++--.==.++.||-..
T Consensus 54 ELf~da~~f~~R~NSLQ~RIDRL~vkVtqLDs~~eevsLqdinmrKAFkSStvqDQqifdR~tlP~pl~etY~~ 127 (518)
T KOG1830|consen 54 ELFNDANNFNHRANSLQERIDRLAVKVTQLDSTVEEVSLQDINMRKAFKSSTVQDQQIFDRNTLPTPLTETYAQ 127 (518)
T ss_pred HHHHHhhhhhhhhhHHHHHHHHHhhhhhccCCcccccccchhHHHhhhhhhhhhhhhhhccccCCchHHHHHhc
Confidence 33333356777888888899999999999998866554333366667777777777777765555555555433
No 91
>PRK09039 hypothetical protein; Validated
Probab=35.73 E-value=2.8e+02 Score=27.06 Aligned_cols=30 Identities=17% Similarity=-0.008 Sum_probs=15.3
Q ss_pred cCChhHHHHHHhhhhhhhhHHHHHHHHHHH
Q 047127 254 AIDAESKAELEGSAADEAIEDVIYALDKAL 283 (322)
Q Consensus 254 ~~~~l~~QLlel~Aed~AieDtIy~L~~aL 283 (322)
..+..+.|+-.|-++..|++.-+..|..+|
T Consensus 131 ~~se~~~~V~~L~~qI~aLr~Qla~le~~L 160 (343)
T PRK09039 131 VSARALAQVELLNQQIAALRRQLAALEAAL 160 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555444
No 92
>PRK11637 AmiB activator; Provisional
Probab=35.23 E-value=2.6e+02 Score=27.88 Aligned_cols=86 Identities=12% Similarity=-0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCccccccccCCCcccccccCChhHHHH
Q 047127 183 YDMGALQARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAE 262 (322)
Q Consensus 183 ~~l~~~~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~~~~~~~~~~~dide~v~~~~~l~~QL 262 (322)
..+.+.+++.+.+++.+..--.++......++.++..+..++..+...+++.+..+..++ +++
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~-----------------~ei 105 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLN-----------------KQI 105 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHH
Q ss_pred HHhhhhhhhhHHHHHHHHHHHhc
Q 047127 263 LEGSAADEAIEDVIYALDKALER 285 (322)
Q Consensus 263 lel~Aed~AieDtIy~L~~aL~~ 285 (322)
-++-++....++-|..+.+.|..
T Consensus 106 ~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 106 DELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 93
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.69 E-value=4.4e+02 Score=25.66 Aligned_cols=99 Identities=16% Similarity=0.134 Sum_probs=50.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCccccccccCCCcccccccCChhHHHHHHhhhhh
Q 047127 190 ARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAAD 269 (322)
Q Consensus 190 ~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~~~~~~~~~~~dide~v~~~~~l~~QLlel~Aed 269 (322)
.+..+-++.+.+.-.+|.++...+...+..+..-.+.+.+.-++.++... +.+..+ ++ +.+.+
T Consensus 176 ~~l~~~l~~l~~~~~~ln~~~~~i~~~i~~l~~~~~~~~~~~~~l~~~~~-------~l~~l~-------~~---~~~~~ 238 (359)
T COG1463 176 PQLNALLDNLAQFTDALNARDGDIGALIANLNQLLDSLAAASDQLDRLLD-------NLATLT-------AA---LAARR 238 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhHHHHHHHHH-------HHHHHH-------HH---Hhhch
Confidence 34445556666666667666666666666666555555555444443321 222222 21 22233
Q ss_pred hhhHHHHHHHHHH-------HhcCCCCHHHHHHHHHHHHHHHH
Q 047127 270 EAIEDVIYALDKA-------LERGVVSFDSYIRQVRILAREQF 305 (322)
Q Consensus 270 ~AieDtIy~L~~a-------L~~g~I~ld~flK~vR~LaReQF 305 (322)
.++.|++..++.+ |.+.+-.+...+...+.++....
T Consensus 239 ~~l~~~l~~~~~~~~~~~~ll~~~r~~l~~~l~~l~~~~~~~~ 281 (359)
T COG1463 239 DALDDALAALSALAATVNDLLAENRPNLNQALANLRPLATLLV 281 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 4555555555444 34445566666666555554443
No 94
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=34.57 E-value=4.3e+02 Score=25.51 Aligned_cols=41 Identities=22% Similarity=0.443 Sum_probs=23.7
Q ss_pred CccCCCCceeccccccccCCCC--------CHHHHHHHHHHh-hccCCCCCc
Q 047127 113 PFVSPCGTITTPYLQTWSYPGY--------NLNDLVHNLVQI-FSHDHPLIY 155 (322)
Q Consensus 113 ~~Vd~~G~v~~pyL~~W~~~~s--------~L~~lv~~l~~~-f~~~pPl~~ 155 (322)
.+| ..|.|.+|.|.=..+ .| .--.++..+... +...||+|.
T Consensus 53 ~~v-~A~~~~iP~LElY~~-sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~ 102 (312)
T smart00787 53 QYV-VAGYCTVPLLELYQF-SCKELKKYISEGRDLFKEIEEETLINNPPLFK 102 (312)
T ss_pred HHH-HHhcCCCcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHH
Confidence 444 567778888874433 22 223366666655 446778763
No 95
>KOG3284 consensus Vacuolar sorting protein VPS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.50 E-value=1e+02 Score=27.87 Aligned_cols=43 Identities=23% Similarity=0.226 Sum_probs=36.9
Q ss_pred hHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 047127 258 ESKAELEGSAADEAIEDVIYALDKALERGVVSFDSYIRQVRIL 300 (322)
Q Consensus 258 l~~QLlel~Aed~AieDtIy~L~~aL~~g~I~ld~flK~vR~L 300 (322)
--++.||-.||-.||=-|+.+|.+|+-+.-|+-.+|--..-.|
T Consensus 19 rerE~~enlseLyaIi~ale~LEKAyirD~is~sey~s~c~kL 61 (213)
T KOG3284|consen 19 REREVYENLSELYAIIKALEQLEKAYIRDCISPSEYTSECSKL 61 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 3478899999999999999999999999999988886665554
No 96
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=34.41 E-value=4.3e+02 Score=26.76 Aligned_cols=108 Identities=15% Similarity=0.114 Sum_probs=0.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcccccccc
Q 047127 165 TSLVSKREALDRFSGMLHYDMGALQARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDPKAIGVIL 244 (322)
Q Consensus 165 p~~~~~~~l~~~~~~~L~~~l~~~~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~~~~~~~~~ 244 (322)
|.+......+......+...+.+..+...+....|...+..+.+-++.|+....+..++..+|....+|..+...+++..
T Consensus 139 ~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~ 218 (420)
T COG4942 139 PEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSE 218 (420)
T ss_pred hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCCcccccccCChhHHHHHHhhhhhhhhHHHHHHHHHH
Q 047127 245 GDRVEDAFEAIDAESKAELEGSAADEAIEDVIYALDKA 282 (322)
Q Consensus 245 ~~dide~v~~~~~l~~QLlel~Aed~AieDtIy~L~~a 282 (322)
-....+.+=+|-+++.++.+.|--+..+
T Consensus 219 ----------l~~~q~~l~eL~~~~~~L~~~Ias~e~~ 246 (420)
T COG4942 219 ----------LSADQKKLEELRANESRLKNEIASAEAA 246 (420)
T ss_pred ----------HHHHHHHHHHHHhHHHHHHHHHHHHHHH
No 97
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=34.31 E-value=5.2e+02 Score=28.03 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 047127 211 RKLKETVVELAGKADVLTNW 230 (322)
Q Consensus 211 ~~Le~~~~~l~~~~~~L~~~ 230 (322)
++|.+++.++..+-+.|.++
T Consensus 596 e~LaeR~e~a~d~Qe~L~~R 615 (717)
T PF10168_consen 596 EKLAERYEEAKDKQEKLMKR 615 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333333333
No 98
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=34.05 E-value=2e+02 Score=21.58 Aligned_cols=22 Identities=9% Similarity=0.119 Sum_probs=9.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHcC
Q 047127 214 KETVVELAGKADVLTNWLKVNG 235 (322)
Q Consensus 214 e~~~~~l~~~~~~L~~~~~e~~ 235 (322)
.++-+.|...+..|...+..+.
T Consensus 41 ~~~~a~L~~qv~~Ls~qv~~Ls 62 (70)
T PF04899_consen 41 SQENAALSEQVNNLSQQVQRLS 62 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443
No 99
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=33.85 E-value=1.6e+02 Score=30.07 Aligned_cols=67 Identities=21% Similarity=0.184 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCccccccccCCCcccccccCChhHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 047127 211 RKLKETVVELAGKADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAADEAIEDVIYALDKALERGVV 288 (322)
Q Consensus 211 ~~Le~~~~~l~~~~~~L~~~~~e~~~~~~~~~~~~~dide~v~~~~~l~~QLlel~Aed~AieDtIy~L~~aL~~g~I 288 (322)
..|++++.+|+.+++.++.- .... -|...+..-...++++.-+|.+.-.-.+|.+..|++.|....+
T Consensus 147 ~~Le~e~~~i~~EI~~l~aG------~~~~-----ld~~~~~er~~~i~~la~~L~~DFr~V~~~~r~l~r~lr~~i~ 213 (478)
T PF11855_consen 147 AELEREIAEIDAEIDRLEAG------DVPV-----LDDTQARERARQILQLARELPADFRRVEDNFRELDRALRERII 213 (478)
T ss_pred HHHHHHHHHHHHHHHHHHCC------CCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555554432 1110 0455566666778889999999999999999999999966543
No 100
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=33.68 E-value=2.8e+02 Score=29.16 Aligned_cols=49 Identities=14% Similarity=0.147 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047127 172 EALDRFSGMLHYDMGALQARTEEETEALLTIQVELKNRARKLKETVVEL 220 (322)
Q Consensus 172 ~l~~~~~~~L~~~l~~~~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l 220 (322)
.+-+.+...+-.=+++..+..-.+|+.|...++.+.+.-..+|.++...
T Consensus 355 ~~r~~v~nsI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~ 403 (557)
T PF01763_consen 355 AFRDSVSNSINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRY 403 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444555667777777776655545555544444
No 101
>PF06056 Terminase_5: Putative ATPase subunit of terminase (gpP-like); InterPro: IPR010332 This family of proteins are annotated as ATPase subunits of phage terminase after []. Terminases are viral proteins that are involved in packaging viral DNA into the capsid.; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=33.65 E-value=28 Score=25.04 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Q 047127 297 VRILAREQFFHRDLLVKLEVKRGFT 321 (322)
Q Consensus 297 vR~LaReQF~~Rali~Ki~~~~gl~ 321 (322)
+|..||.-|+.-..+..|+..+|++
T Consensus 2 ~k~~A~~LY~~G~~~~eIA~~Lg~~ 26 (58)
T PF06056_consen 2 VKEQARSLYLQGWSIKEIAEELGVP 26 (58)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCCC
Confidence 6899999999999999999999986
No 102
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=33.50 E-value=1.3e+02 Score=19.16 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047127 197 EALLTIQVELKNRARKLKETVVELAG 222 (322)
Q Consensus 197 ~~L~~~q~~L~~~~~~Le~~~~~l~~ 222 (322)
+.|.+....|++++++|+.....|.+
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455556666666666666665543
No 103
>PRK14139 heat shock protein GrpE; Provisional
Probab=33.35 E-value=2.2e+02 Score=25.47 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047127 180 MLHYDMGALQARTEEETEALLTIQVELKNRARKLKETVVEL 220 (322)
Q Consensus 180 ~L~~~l~~~~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l 220 (322)
.+..++.++..+..+.-+.+.+.+.+..+.+...++++..+
T Consensus 36 ~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~ 76 (185)
T PRK14139 36 ALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKA 76 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333333333555666666666665555555544
No 104
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=33.18 E-value=2.2e+02 Score=30.13 Aligned_cols=25 Identities=8% Similarity=-0.007 Sum_probs=17.0
Q ss_pred Cccccccc---CChhHHHHHHhhhhhhh
Q 047127 247 RVEDAFEA---IDAESKAELEGSAADEA 271 (322)
Q Consensus 247 dide~v~~---~~~l~~QLlel~Aed~A 271 (322)
-+||+|.- .|+..+++|.++|.-+.
T Consensus 534 v~dElifrdAKkDe~~rkaYK~La~lh~ 561 (594)
T PF05667_consen 534 VTDELIFRDAKKDEAARKAYKLLASLHE 561 (594)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 45555442 47788899998887654
No 105
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=32.97 E-value=2e+02 Score=29.32 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=14.1
Q ss_pred eeccccccccCCCCCHHHHHHH
Q 047127 121 ITTPYLQTWSYPGYNLNDLVHN 142 (322)
Q Consensus 121 v~~pyL~~W~~~~s~L~~lv~~ 142 (322)
++++-|..|...++-+-...+.
T Consensus 201 fh~~cl~~w~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 201 FHCSCLMKWWDSSCPVCRYCQS 222 (493)
T ss_pred cchHHHhhcccCcChhhhhhcC
Confidence 4578888998756555444433
No 106
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=32.78 E-value=5e+02 Score=25.69 Aligned_cols=91 Identities=15% Similarity=0.148 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCcccccc----ccCC--CcccccccCChhHHHHHHhhhhhhhhHHHHHHHHHHHh
Q 047127 211 RKLKETVVELAGKADVLTNWLKVNGDPKAIGV----ILGD--RVEDAFEAIDAESKAELEGSAADEAIEDVIYALDKALE 284 (322)
Q Consensus 211 ~~Le~~~~~l~~~~~~L~~~~~e~~~~~~~~~----~~~~--dide~v~~~~~l~~QLlel~Aed~AieDtIy~L~~aL~ 284 (322)
.+..+++..++.++..|+..+.+.+..+.-+. .... +++-+ -|+.. +.|+.|=.-|.++|..|.+.|.
T Consensus 268 ~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElc---rD~~q---~~L~~Ev~~l~~~i~~L~~~L~ 341 (384)
T PF03148_consen 268 KKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELC---RDPPQ---YGLIEEVKELRESIEALQEKLD 341 (384)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHH---HhhHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666655544432111 1111 22222 23333 4455666788999999999888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Q 047127 285 RGVVSFDSYIRQVRILAREQFFH 307 (322)
Q Consensus 285 ~g~I~ld~flK~vR~LaReQF~~ 307 (322)
.-.-++..-.++--.|-++-=.+
T Consensus 342 ~a~~~l~~L~~~~~~Le~di~~K 364 (384)
T PF03148_consen 342 EAEASLQKLERTRLRLEEDIAVK 364 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666555555554333
No 107
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=32.56 E-value=2.7e+02 Score=22.56 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=8.6
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 047127 191 RTEEETEALLTIQVELKNR 209 (322)
Q Consensus 191 ~~~~e~~~L~~~q~~L~~~ 209 (322)
+++.|+++|...+++|.++
T Consensus 44 k~eqE~dSL~FrN~QL~kR 62 (102)
T PF10205_consen 44 KLEQENDSLTFRNQQLTKR 62 (102)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445544444444433
No 108
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=32.51 E-value=5.2e+02 Score=25.82 Aligned_cols=47 Identities=21% Similarity=0.181 Sum_probs=29.1
Q ss_pred HHHHHHHhHHHHHHHHHHHcCCccccccccCCCcccccccCChhHHHHHHhhhhhh
Q 047127 215 ETVVELAGKADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAADE 270 (322)
Q Consensus 215 ~~~~~l~~~~~~L~~~~~e~~~~~~~~~~~~~dide~v~~~~~l~~QLlel~Aed~ 270 (322)
..+..|....++|++-++.+.+. .++..+.++..-.+-|++.+.++.
T Consensus 77 ~l~~~ld~~~~~L~~~l~~Lr~t---------~v~~~~~~~~~~~ktL~DFVd~~~ 123 (412)
T PF04108_consen 77 DLVKELDPADARLEQTLDMLRNT---------KVPPFFRPPGEEPKTLYDFVDEDS 123 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC---------cCCccccCCCCCCCcHHHhcCHHH
Confidence 33344444444444444444433 677888888778888999988763
No 109
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=32.37 E-value=1e+02 Score=30.96 Aligned_cols=80 Identities=16% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHcCCccccccccCC-Cc
Q 047127 174 LDRFSGMLHYDMGALQARTEEETEALLTIQVELKNRARKLKETVVELAG----KADVLTNWLKVNGDPKAIGVILGD-RV 248 (322)
Q Consensus 174 ~~~~~~~L~~~l~~~~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~----~~~~L~~~~~e~~~~~~~~~~~~~-di 248 (322)
+......|..++..+..+...++.-+.+.-+|-+-+.+.||..+.++.+ ++..|++-+...++++.....+-. ||
T Consensus 224 ik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi 303 (395)
T PF10267_consen 224 IKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDI 303 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q ss_pred ccccc
Q 047127 249 EDAFE 253 (322)
Q Consensus 249 de~v~ 253 (322)
.|++.
T Consensus 304 ~E~~E 308 (395)
T PF10267_consen 304 WEVME 308 (395)
T ss_pred HHHHH
No 110
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=31.84 E-value=4.4e+02 Score=27.50 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047127 294 IRQVRILAREQFFHRDLL 311 (322)
Q Consensus 294 lK~vR~LaReQF~~Rali 311 (322)
.+-.+.|..|-+..|..+
T Consensus 149 ~~i~~~Lk~e~~~lr~~L 166 (593)
T PF06248_consen 149 LKILKLLKDEYSELRENL 166 (593)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 344455555555444433
No 111
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=31.52 E-value=2.2e+02 Score=21.28 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=34.2
Q ss_pred hhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 047127 267 AADEAIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLVKLEVKRGFT 321 (322)
Q Consensus 267 Aed~AieDtIy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Rali~Ki~~~~gl~ 321 (322)
+....++.+++.|++++.+|++..|+|-... |++- ...+.+.+.+|.+
T Consensus 10 ~s~e~~~~~~~ql~Q~~~~Gkv~~ee~n~~~-----e~~p--~~~~~lAk~~G~t 57 (75)
T TIGR02675 10 ASAEEADGALIQLSQMLASGKLRGEEINSLL-----EALP--GALQALAKAMGVT 57 (75)
T ss_pred CCHHHHHHHHHHHHHHHHcCcccHHHHHHHH-----HHhH--HHHHHHHHHhCCC
Confidence 4456788999999999999999999984332 2321 3556666666654
No 112
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.42 E-value=4.1e+02 Score=24.74 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=17.4
Q ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHHH
Q 047127 276 IYALDKALER--GVVSFDSYIRQVRILAR 302 (322)
Q Consensus 276 Iy~L~~aL~~--g~I~ld~flK~vR~LaR 302 (322)
+|.|++|... ..++|-.|++.+|+==|
T Consensus 207 L~gl~~a~s~vr~tnnFs~FL~n~RsgFr 235 (246)
T KOG4657|consen 207 LQGLTSAISAVRPTNNFSSFLENKRSGFR 235 (246)
T ss_pred cccHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 3444444433 35899999999997444
No 113
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=31.39 E-value=3.1e+02 Score=25.88 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCccc
Q 047127 199 LLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDPKA 239 (322)
Q Consensus 199 L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~~~~ 239 (322)
+...+.+|..-+++.+.+++.|+.+.+.|.+.+....+.+.
T Consensus 65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~ 105 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELN 105 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888888888888888888776655443
No 114
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=31.13 E-value=2.1e+02 Score=20.90 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=5.2
Q ss_pred HHhHHHHHHHHHH
Q 047127 220 LAGKADVLTNWLK 232 (322)
Q Consensus 220 l~~~~~~L~~~~~ 232 (322)
|..+++.|+..++
T Consensus 44 L~~ei~~L~~e~e 56 (61)
T PF08826_consen 44 LEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 115
>PF07886 BA14K: BA14K-like protein; InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process [].
Probab=30.62 E-value=48 Score=20.99 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=21.6
Q ss_pred HHHHHHHhCCCCccccceeecCCCCc
Q 047127 36 QLLSLLQNYPSFNLSNDTFTHNDGTA 61 (322)
Q Consensus 36 dv~~~l~~y~~L~p~~~~~t~~dG~~ 61 (322)
++.-..++|.++.|.+.+|.-.||..
T Consensus 2 h~~~C~~rYRSy~p~~~Ty~~~~G~r 27 (31)
T PF07886_consen 2 HVAWCARRYRSYDPRDNTYQPYDGPR 27 (31)
T ss_pred HHHHHHHHhcCCCCCCCcEeCCCCcc
Confidence 45556779999999999999888864
No 116
>PRK14147 heat shock protein GrpE; Provisional
Probab=30.53 E-value=2.5e+02 Score=24.68 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047127 200 LTIQVELKNRARKLKETV 217 (322)
Q Consensus 200 ~~~q~~L~~~~~~Le~~~ 217 (322)
.+.+.+..+.+...++++
T Consensus 42 lR~~Ad~eN~rkR~~kE~ 59 (172)
T PRK14147 42 LRERADLENQRKRIARDV 59 (172)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444443333333
No 117
>PRK10722 hypothetical protein; Provisional
Probab=30.24 E-value=2e+02 Score=26.99 Aligned_cols=43 Identities=23% Similarity=0.177 Sum_probs=28.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCc
Q 047127 188 LQARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDP 237 (322)
Q Consensus 188 ~~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~~ 237 (322)
+.+.+.+++++|.+.+.+| +.++.....+.+.|++-.+++.+.
T Consensus 170 LQq~sD~qlD~lrqq~~~L-------q~~L~~t~rKLEnLTdIERqLSsR 212 (247)
T PRK10722 170 LQQSSDSELDALRQQQQRL-------QYQLELTTRKLENLTDIERQLSSR 212 (247)
T ss_pred HhhccHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhccC
Confidence 3345567777777766655 555666666777777777777554
No 118
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=29.97 E-value=5.3e+02 Score=27.08 Aligned_cols=29 Identities=21% Similarity=0.094 Sum_probs=14.5
Q ss_pred EEEeeeec---CCCCCeeEEEeecccCCCCCC
Q 047127 67 VSGCFHVS---QSTPPIHFTLWLHENYPSMAP 95 (322)
Q Consensus 67 l~Gtipv~---g~~y~iPi~Iwlp~~yP~~pP 95 (322)
+-|-.-|+ -.-|.-.+=.-.|.+|-....
T Consensus 39 WIGiFKVGw~s~rdY~Tf~Wa~~p~~~~~~s~ 70 (546)
T PF07888_consen 39 WIGIFKVGWSSTRDYYTFVWAPVPENYVEGSA 70 (546)
T ss_pred eeEEeecCCCchhheeeEEeeccCccccCCCc
Confidence 34555665 223555543334566655544
No 119
>PRK14143 heat shock protein GrpE; Provisional
Probab=29.93 E-value=2.5e+02 Score=26.11 Aligned_cols=23 Identities=9% Similarity=0.226 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047127 197 EALLTIQVELKNRARKLKETVVE 219 (322)
Q Consensus 197 ~~L~~~q~~L~~~~~~Le~~~~~ 219 (322)
+.+.+.+.+..+.+...++++..
T Consensus 88 d~~lR~~AdfeN~RKR~~kE~e~ 110 (238)
T PRK14143 88 SQYMRIAADFDNFRKRTSREQED 110 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444444443
No 120
>PRK14154 heat shock protein GrpE; Provisional
Probab=29.90 E-value=2.4e+02 Score=25.75 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047127 198 ALLTIQVELKNRARKLKET 216 (322)
Q Consensus 198 ~L~~~q~~L~~~~~~Le~~ 216 (322)
.+.+.+.+..+.+...+++
T Consensus 74 ~~lRl~ADfeNyRKR~~kE 92 (208)
T PRK14154 74 QYLRAQAEMDNLRKRIERE 92 (208)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444443333333
No 121
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=29.56 E-value=2.4e+02 Score=30.28 Aligned_cols=50 Identities=26% Similarity=0.272 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhHHHHHHHH
Q 047127 181 LHYDMGALQARTEEETEALLTIQVELKNRA-----------RKLKETVVELAGKADVLTNW 230 (322)
Q Consensus 181 L~~~l~~~~~~~~~e~~~L~~~q~~L~~~~-----------~~Le~~~~~l~~~~~~L~~~ 230 (322)
|+.++..+-++.+.|.+.+....+++++.. ++||++..-|..+...+...
T Consensus 2 LRdkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~~ 62 (654)
T PF09798_consen 2 LRDKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLSSS 62 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 556666666677777766666555554433 44555555555544444444
No 122
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=29.56 E-value=5.4e+02 Score=25.41 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=23.8
Q ss_pred hHHHHHHHHhcCCCCCCcccCCccchHhHHHHHHHHHHhC
Q 047127 5 SSIQFIDTALWCTTPFRLSYADPNQKWLIRKQLLSLLQNY 44 (322)
Q Consensus 5 ~v~~wL~~vl~~~~~~~~~Y~~~~~~~~v~~dv~~~l~~y 44 (322)
+...||.+.....=...-.|.||+.+ ...++..|...
T Consensus 47 ~L~~WL~~~~g~~f~~p~e~DDPn~~---~~~Il~~lr~~ 83 (359)
T PF10498_consen 47 SLCAWLISKAGRKFEQPQEYDDPNAT---ISNILDELRKL 83 (359)
T ss_pred HHHHHHHHhcCCCCCCCcccCCHHHH---HHHHHHHHHcc
Confidence 46789999766321112248888875 57777777764
No 123
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.37 E-value=3.5e+02 Score=27.49 Aligned_cols=44 Identities=18% Similarity=0.111 Sum_probs=33.9
Q ss_pred CcccccccCChhHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCHHHH
Q 047127 247 RVEDAFEAIDAESKAELEGSAADEAIEDVIYALDKALERGVVSFDSY 293 (322)
Q Consensus 247 dide~v~~~~~l~~QLlel~Aed~AieDtIy~L~~aL~~g~I~ld~f 293 (322)
.+.+++ .|..+++-++-++-.--||-|.-|.++.+.-.=++..|
T Consensus 152 Klrelv---~pmekeI~elk~kl~~aE~~i~El~k~~~h~a~slh~~ 195 (542)
T KOG0993|consen 152 KLRELV---TPMEKEINELKKKLAKAEQRIDELSKAKHHKAESLHVF 195 (542)
T ss_pred HHHHHH---hhHHHHHHHHHHHHHhHHHHHHHHHhhhcccchHHHHH
Confidence 455554 57889999999999999999999999988854344444
No 124
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=29.26 E-value=71 Score=24.87 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 047127 270 EAIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHR 308 (322)
Q Consensus 270 ~AieDtIy~L~~aL~~g~I~ld~flK~vR~LaReQF~~R 308 (322)
..+++.|..++. =..|+|++++|++.+..|+-.++-.+
T Consensus 47 ~~v~~mi~~~D~-d~DG~I~F~EF~~l~~~l~~~~~~~~ 84 (89)
T cd05022 47 EGLEEKMKNLDV-NQDSKLSFEEFWELIGELAKAVKGEK 84 (89)
T ss_pred HHHHHHHHHhCC-CCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 445555544332 13468999999999999998887664
No 125
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=28.85 E-value=5.9e+02 Score=28.63 Aligned_cols=31 Identities=19% Similarity=0.069 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCccccc
Q 047127 211 RKLKETVVELAGKADVLTNWLKVNGDPKAIG 241 (322)
Q Consensus 211 ~~Le~~~~~l~~~~~~L~~~~~e~~~~~~~~ 241 (322)
+...+++.+|....+.|+..+++++..+.++
T Consensus 406 E~k~sE~~eL~r~kE~Lsr~~d~aEs~iadl 436 (1243)
T KOG0971|consen 406 EKKNSELEELRRQKERLSRELDQAESTIADL 436 (1243)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777777777776665443
No 126
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=28.65 E-value=5.5e+02 Score=25.35 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=8.5
Q ss_pred CcccccccCChhH
Q 047127 247 RVEDAFEAIDAES 259 (322)
Q Consensus 247 dide~v~~~~~l~ 259 (322)
=+|.+..|..|..
T Consensus 381 Vi~~a~~P~~P~~ 393 (444)
T TIGR03017 381 ILNPAVPPLEPSS 393 (444)
T ss_pred eeCCCCCCCCCCC
Confidence 5666666766655
No 127
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=28.46 E-value=3.3e+02 Score=22.29 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=8.7
Q ss_pred HHHHHHhHHHHHHHHHHHc
Q 047127 216 TVVELAGKADVLTNWLKVN 234 (322)
Q Consensus 216 ~~~~l~~~~~~L~~~~~e~ 234 (322)
++..|...++.|.+.++++
T Consensus 97 ev~~L~~RI~~Le~~l~~l 115 (118)
T TIGR01837 97 EIEALSAKIEQLAVQVEEL 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 128
>PRK14158 heat shock protein GrpE; Provisional
Probab=28.42 E-value=3.1e+02 Score=24.75 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047127 197 EALLTIQVELKNRARKLKETVVEL 220 (322)
Q Consensus 197 ~~L~~~q~~L~~~~~~Le~~~~~l 220 (322)
+.+.+.+.+..+.+...++++..+
T Consensus 61 d~~lR~~AefeN~RkR~~kE~e~~ 84 (194)
T PRK14158 61 DKYLRERADLENYRKRVQKEKEEL 84 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555554444444443
No 129
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.33 E-value=4.6e+02 Score=23.93 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047127 290 FDSYIRQVRILAREQFFHRD 309 (322)
Q Consensus 290 ld~flK~vR~LaReQF~~Ra 309 (322)
-..|-|+.|.|.|.-+|.-.
T Consensus 169 s~~fr~q~r~~~r~mw~~n~ 188 (217)
T KOG0859|consen 169 SFDFRTQGRKLRRKMWFQNM 188 (217)
T ss_pred hHHHHHHHHHHHHHHHHhcc
Confidence 56799999999999998743
No 130
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.15 E-value=2.7e+02 Score=21.12 Aligned_cols=13 Identities=0% Similarity=0.317 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 047127 173 ALDRFSGMLHYDM 185 (322)
Q Consensus 173 l~~~~~~~L~~~l 185 (322)
.++.++.|++..+
T Consensus 5 v~ekLE~KiqqAv 17 (79)
T COG3074 5 VFEKLEAKVQQAI 17 (79)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555433
No 131
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=28.12 E-value=3.5e+02 Score=22.40 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 047127 211 RKLKETVVELAGKADVLT 228 (322)
Q Consensus 211 ~~Le~~~~~l~~~~~~L~ 228 (322)
..|+.++..+...++.|.
T Consensus 101 ~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 132
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=28.06 E-value=2.4e+02 Score=32.45 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=12.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047127 186 GALQARTEEETEALLTIQVELKNRARKLKETV 217 (322)
Q Consensus 186 ~~~~~~~~~e~~~L~~~q~~L~~~~~~Le~~~ 217 (322)
..++.++++.++.|..++.+...++..|++..
T Consensus 1699 ~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~ 1730 (1758)
T KOG0994|consen 1699 EKLLGQANEKLDRLKDLELEYLRNEQALEDKA 1730 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 33333444444444444433333333333333
No 133
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=28.03 E-value=2.9e+02 Score=21.39 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHH
Q 047127 172 EALDRFSGMLHYDMGALQARTEEETEALLTIQVELKN-------RARKLKETVVELAGKAD 225 (322)
Q Consensus 172 ~l~~~~~~~L~~~l~~~~~~~~~e~~~L~~~q~~L~~-------~~~~Le~~~~~l~~~~~ 225 (322)
++++.++.|++..+.. ..-.+-|++.|...+..|.+ +++.|+++-..|+.+-.
T Consensus 4 EvleqLE~KIqqAvdt-I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 4 EVFEKLEAKVQQAIDT-ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4556666666655432 22234444555444433333 33445555555544333
No 134
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=27.76 E-value=1.5e+02 Score=24.15 Aligned_cols=46 Identities=11% Similarity=0.128 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCccc
Q 047127 194 EETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDPKA 239 (322)
Q Consensus 194 ~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~~~~ 239 (322)
++|.+|...-..+......|++.+..+..+-..|...+..+++.+.
T Consensus 57 ~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~~~~ 102 (116)
T PF05064_consen 57 EKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEKQVE 102 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555544555556678889999998888888999888887754
No 135
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=27.73 E-value=7.6e+02 Score=26.98 Aligned_cols=10 Identities=40% Similarity=0.361 Sum_probs=6.0
Q ss_pred CeeEEEeecc
Q 047127 79 PIHFTLWLHE 88 (322)
Q Consensus 79 ~iPi~Iwlp~ 88 (322)
.+|+.|.+..
T Consensus 311 ~vp~di~l~~ 320 (771)
T TIGR01069 311 VVPFTLNLKF 320 (771)
T ss_pred eEeceeEeCC
Confidence 3666666654
No 136
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=27.66 E-value=4e+02 Score=27.64 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=10.2
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 047127 289 SFDSYIRQVRILAREQFFHR 308 (322)
Q Consensus 289 ~ld~flK~vR~LaReQF~~R 308 (322)
....++|..-.-+++.--.+
T Consensus 164 ~~~~~~~~~~~~~~~~a~~~ 183 (514)
T TIGR03319 164 EAAKLIKEIEEEAKEEADKK 183 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555544443
No 137
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=27.37 E-value=3.4e+02 Score=22.04 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=30.0
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047127 265 GSAADEAIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLV 312 (322)
Q Consensus 265 l~Aed~AieDtIy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Rali~ 312 (322)
-+.=+..+++|+.++.+.++.=.-..+..-+..+.+.++.=+....++
T Consensus 78 g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 78 GYYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788888888887765555566666666666665544444433
No 138
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=27.29 E-value=5.2e+02 Score=25.81 Aligned_cols=44 Identities=20% Similarity=0.117 Sum_probs=22.1
Q ss_pred hhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047127 269 DEAIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLVKLEV 316 (322)
Q Consensus 269 d~AieDtIy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Rali~Ki~~ 316 (322)
-.+--|.++.|..-..+-. +.|=.-..++.|+++. +..+++|..
T Consensus 327 i~~~~~~l~~L~~~Y~~F~---~aY~~LL~Ev~RRr~~-~~k~~~i~~ 370 (412)
T PF04108_consen 327 IQAYIDELEQLCEFYEGFL---SAYDSLLLEVERRRAV-RDKMKKIIR 370 (412)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3334444444443333322 3455556677788887 444444443
No 139
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=27.26 E-value=2.3e+02 Score=34.33 Aligned_cols=32 Identities=31% Similarity=0.125 Sum_probs=24.7
Q ss_pred cCChhHHHHHHhhhhhhhhHHHHHHHHHHHhc
Q 047127 254 AIDAESKAELEGSAADEAIEDVIYALDKALER 285 (322)
Q Consensus 254 ~~~~l~~QLlel~Aed~AieDtIy~L~~aL~~ 285 (322)
-...+..+|-|+-++..+-||....+.-.+..
T Consensus 1527 e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~ 1558 (1930)
T KOG0161|consen 1527 EKEELQAALEELEAALEAEEDKKLRLQLELQQ 1558 (1930)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 44668899999999999999999875544433
No 140
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=27.03 E-value=58 Score=28.05 Aligned_cols=37 Identities=24% Similarity=0.342 Sum_probs=31.6
Q ss_pred CccCCCCceeccccccccCCCCCHHHHHHHHHHhhcc
Q 047127 113 PFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 113 ~~Vd~~G~v~~pyL~~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
--||++|.|.+||+..-.-.+-++-++=+.+...+++
T Consensus 23 ~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~ 59 (165)
T TIGR03027 23 VPVRPDGKITTPLVGDLVASGKTPTQLARDIEEKLAK 59 (165)
T ss_pred eEECCCCeEeecccCeEEECCCCHHHHHHHHHHHHHH
Confidence 3589999999999999887788888888888887764
No 141
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=26.97 E-value=3.4e+02 Score=21.88 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 047127 204 VELKNRARKLKETVVELAGKADVLTNWL 231 (322)
Q Consensus 204 ~~L~~~~~~Le~~~~~l~~~~~~L~~~~ 231 (322)
++|++.+++|+.++..-+.+++.|++.+
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555555555555555555555443
No 142
>PRK14161 heat shock protein GrpE; Provisional
Probab=26.78 E-value=4.2e+02 Score=23.47 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047127 197 EALLTIQVELKNRARKLKETVVE 219 (322)
Q Consensus 197 ~~L~~~q~~L~~~~~~Le~~~~~ 219 (322)
+.+.+.+.++.+.+...++++..
T Consensus 40 d~~lR~~AefeN~rkR~~ke~~~ 62 (178)
T PRK14161 40 DKLIRTTAEIDNTRKRLEKARDE 62 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444444433
No 143
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=26.69 E-value=4.1e+02 Score=30.17 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 047127 273 EDVIYALDKALERGVVSFDSYIRQVRILAREQFFHRD 309 (322)
Q Consensus 273 eDtIy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Ra 309 (322)
+..|-.|+.++++---+++.|=+.+..-+-+||-.-+
T Consensus 915 ~e~L~~l~~~l~~R~~~~qk~r~~~~~~~~~~F~~~l 951 (1074)
T KOG0250|consen 915 DELLKALGEALESREQKYQKFRKLLTRRATEEFDALL 951 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455555544444555555555555555554433
No 144
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=26.49 E-value=1.6e+02 Score=30.20 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 047127 211 RKLKETVVELAGKADVLTNWL 231 (322)
Q Consensus 211 ~~Le~~~~~l~~~~~~L~~~~ 231 (322)
++|+++++.++..++.|+..+
T Consensus 119 ~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 119 EQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544
No 145
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=26.44 E-value=1.3e+02 Score=28.30 Aligned_cols=95 Identities=13% Similarity=0.129 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCccccccccCC----Ccccccc-------------
Q 047127 191 RTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDPKAIGVILGD----RVEDAFE------------- 253 (322)
Q Consensus 191 ~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~~~~~~~~~~~----dide~v~------------- 253 (322)
..+..+..|.++-..-.+..-.|.+++..|+.++..|+..++++...+..+..... |+|+.+-
T Consensus 37 ~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~~~~~~~~~~~~ 116 (263)
T PRK10803 37 SVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGGAAAQSTSGDQS 116 (263)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccc
Q ss_pred ------------------------cCChhHHHHHHhhhhhhhhHHHHHHHHHHHhc
Q 047127 254 ------------------------AIDAESKAELEGSAADEAIEDVIYALDKALER 285 (322)
Q Consensus 254 ------------------------~~~~l~~QLlel~Aed~AieDtIy~L~~aL~~ 285 (322)
.+...+++.++++-+..-.+++|..+.+.+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~ 172 (263)
T PRK10803 117 GAAASATPAADAGTANAGAPVQSGDANTDYNAAIALVQDKSRQDDAIVAFQNFVKK 172 (263)
T ss_pred cCCCccccccCcccccccCCCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
No 146
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=26.34 E-value=4.5e+02 Score=23.14 Aligned_cols=18 Identities=6% Similarity=0.327 Sum_probs=13.7
Q ss_pred cCCCCHHHHHHHHHHHHH
Q 047127 285 RGVVSFDSYIRQVRILAR 302 (322)
Q Consensus 285 ~g~I~ld~flK~vR~LaR 302 (322)
++.|+.+.-|+..|.||+
T Consensus 78 ~~~v~~~eLL~YA~rISk 95 (188)
T PF10018_consen 78 KRPVDYEELLSYAHRISK 95 (188)
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 345888888888888876
No 147
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=26.28 E-value=1.2e+02 Score=17.59 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=26.5
Q ss_pred hHHHHHHhhhhhhhhHHHHHHHHHHHhcCC
Q 047127 258 ESKAELEGSAADEAIEDVIYALDKALERGV 287 (322)
Q Consensus 258 l~~QLlel~Aed~AieDtIy~L~~aL~~g~ 287 (322)
.+|-++..+++..-.++++..+.+..+.|.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGI 31 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 367889999999999999999999988874
No 148
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=26.18 E-value=3.5e+02 Score=26.36 Aligned_cols=89 Identities=13% Similarity=-0.022 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCccccc-ccc--CC-CcccccccCChhHHHHHHhhhhhhh
Q 047127 196 TEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDPKAIG-VIL--GD-RVEDAFEAIDAESKAELEGSAADEA 271 (322)
Q Consensus 196 ~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~~~~~~-~~~--~~-dide~v~~~~~l~~QLlel~Aed~A 271 (322)
++.+.....+|..--..+-++..++..+.+.++.+.+.+...+..+ +.. .- |||.++.-.-=+..+|-.+..|-.-
T Consensus 135 LEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l 214 (319)
T PF09789_consen 135 LEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKEL 214 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334433334556666667777777777766554433221 111 11 8999998888899999999888888
Q ss_pred hHHHHHHHHHHHh
Q 047127 272 IEDVIYALDKALE 284 (322)
Q Consensus 272 ieDtIy~L~~aL~ 284 (322)
+.-+|.---.+|.
T Consensus 215 ~k~~i~KYK~~le 227 (319)
T PF09789_consen 215 LKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887777777
No 149
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=26.16 E-value=78 Score=25.07 Aligned_cols=58 Identities=12% Similarity=0.136 Sum_probs=25.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHcCCccccccccCCCcccccccCChhHHHHHHhhhhhhhhHHHHHH
Q 047127 214 KETVVELAGKADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAADEAIEDVIYA 278 (322)
Q Consensus 214 e~~~~~l~~~~~~L~~~~~e~~~~~~~~~~~~~dide~v~~~~~l~~QLlel~Aed~AieDtIy~ 278 (322)
..++..++.....++..+.+.... |++.++++.-..-+-.++=++-++-..+++.++.
T Consensus 42 ~~~~e~lr~~rN~~sk~I~~~~~~-------~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 42 QQELEELRAERNELSKEIGKLKKA-------GEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHT-------TCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHhhC-------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443322 2245554444444444444444444444444443
No 150
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=26.10 E-value=5.8e+02 Score=29.15 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=14.6
Q ss_pred hHHHHHHhhhhhhhhHHHHHHHHHHHhcC
Q 047127 258 ESKAELEGSAADEAIEDVIYALDKALERG 286 (322)
Q Consensus 258 l~~QLlel~Aed~AieDtIy~L~~aL~~g 286 (322)
+-.++-.+.+.-..+.|.+..+.+.+..-
T Consensus 444 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 472 (1163)
T COG1196 444 LNEELEELEEQLEELRDRLKELERELAEL 472 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555554443
No 151
>PF10975 DUF2802: Protein of unknown function (DUF2802); InterPro: IPR021244 This bacterial family of proteins has no known function.
Probab=25.97 E-value=2e+02 Score=21.47 Aligned_cols=50 Identities=8% Similarity=0.059 Sum_probs=31.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHcCCccccccccCCCcccccccCChhHHHHHHhhhhhhhhHHHHHH
Q 047127 214 KETVVELAGKADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAADEAIEDVIYA 278 (322)
Q Consensus 214 e~~~~~l~~~~~~L~~~~~e~~~~~~~~~~~~~dide~v~~~~~l~~QLlel~Aed~AieDtIy~ 278 (322)
.+++.+++.....+.+..++.+... +.++.|+|...++..=..+++.+..
T Consensus 4 g~~l~~l~~~l~~l~~~~~~~~~~d---------------~~~~~Y~~A~klv~~Ga~~~el~~~ 53 (70)
T PF10975_consen 4 GQRLAELEQQLKQLEDQQEELEQRD---------------PDSPLYSQAIKLVRQGASVEELMEE 53 (70)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCC---------------CCcchHHHHHHHHHcCCCHHHHHHH
Confidence 4556666666666666666654331 4567778888877777666666543
No 152
>PRK12704 phosphodiesterase; Provisional
Probab=25.64 E-value=4.6e+02 Score=27.22 Aligned_cols=135 Identities=13% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCccccccccCCCcccccc
Q 047127 175 DRFSGMLHYDMGALQARTEEET-EALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDPKAIGVILGDRVEDAFE 253 (322)
Q Consensus 175 ~~~~~~L~~~l~~~~~~~~~e~-~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~~~~~~~~~~~dide~v~ 253 (322)
.+..........+...+..+++ ..+...+.+|.++++.|+++...|....+.|.+..++++.....+......+++.-.
T Consensus 52 ke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~ 131 (520)
T PRK12704 52 EAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE 131 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCChhHHHHHHhhhhhhhh--HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH
Q 047127 254 AIDAESKAELEGSAADEAI--EDVIYALDKALERG-VVSFDSYIRQVRILAREQFFHRD 309 (322)
Q Consensus 254 ~~~~l~~QLlel~Aed~Ai--eDtIy~L~~aL~~g-~I~ld~flK~vR~LaReQF~~Ra 309 (322)
.-.-+..+...-+.+...+ +++=..|=+.+... +-+...++|..-.-++++--.+|
T Consensus 132 ~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a 190 (520)
T PRK12704 132 ELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKA 190 (520)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 153
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=25.58 E-value=31 Score=25.69 Aligned_cols=7 Identities=14% Similarity=0.795 Sum_probs=2.9
Q ss_pred eEEEeec
Q 047127 81 HFTLWLH 87 (322)
Q Consensus 81 Pi~Iwlp 87 (322)
||.||+|
T Consensus 19 PVqiWVP 25 (65)
T PF11455_consen 19 PVQIWVP 25 (65)
T ss_pred cceeeCC
Confidence 3444444
No 154
>PHA02562 46 endonuclease subunit; Provisional
Probab=25.55 E-value=5.7e+02 Score=26.05 Aligned_cols=119 Identities=10% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCccccccccCCCcccc
Q 047127 172 EALDRFSGMLHYDMGALQARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDPKAIGVILGDRVEDA 251 (322)
Q Consensus 172 ~l~~~~~~~L~~~l~~~~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~~~~~~~~~~~dide~ 251 (322)
+..+.+...++..+.+..++...--..+...++++......+++........++.+++.++++... ...+
T Consensus 163 ~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~----------~~~l 232 (562)
T PHA02562 163 SVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEE----------AKTI 232 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH
Q ss_pred cccCChhHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 047127 252 FEAIDAESKAELEGSAADEAIEDVIYALDKALERGVVSFDSYIRQVRIL 300 (322)
Q Consensus 252 v~~~~~l~~QLlel~Aed~AieDtIy~L~~aL~~g~I~ld~flK~vR~L 300 (322)
-..-+-+-++|.++..+...+++.+.-+..++..-.-+++.+-+....+
T Consensus 233 ~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 233 KAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 155
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=25.46 E-value=3.3e+02 Score=21.45 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHH
Q 047127 212 KLKETVVELAGKADVLTNWLK 232 (322)
Q Consensus 212 ~Le~~~~~l~~~~~~L~~~~~ 232 (322)
.|+..+..+..+.+.+.+.+.
T Consensus 74 ~le~~i~~l~~~~~~l~~~~~ 94 (105)
T cd00632 74 TIELRIKRLERQEEDLQEKLK 94 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444433333333333
No 156
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=25.22 E-value=7.4e+02 Score=25.23 Aligned_cols=29 Identities=17% Similarity=0.019 Sum_probs=22.9
Q ss_pred hhHHHHHHhhhhhhhhHHHHHHHHHHHhc
Q 047127 257 AESKAELEGSAADEAIEDVIYALDKALER 285 (322)
Q Consensus 257 ~l~~QLlel~Aed~AieDtIy~L~~aL~~ 285 (322)
|-..|+-.+-+++.||++-|...-..+-.
T Consensus 311 p~sPqV~~l~~rI~aLe~QIa~er~kl~~ 339 (434)
T PRK15178 311 DQNPLIPRLSAKIKVLEKQIGEQRNRLSN 339 (434)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 33457778889999999999998777753
No 157
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=25.01 E-value=28 Score=21.29 Aligned_cols=17 Identities=18% Similarity=0.509 Sum_probs=13.6
Q ss_pred hcCCCCHHHHHHHHHHH
Q 047127 284 ERGVVSFDSYIRQVRIL 300 (322)
Q Consensus 284 ~~g~I~ld~flK~vR~L 300 (322)
+.|.|++++|..-.++|
T Consensus 13 ~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 13 GDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp SSSEEEHHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHhC
Confidence 35789999999888765
No 158
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=24.91 E-value=9.1e+02 Score=26.16 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=31.2
Q ss_pred hhhhhhhhHHHHHHHHHHHhcC-CCCHHHH--HHHHHH--------HHHHHHHHHHHHHHHHHhcCC
Q 047127 265 GSAADEAIEDVIYALDKALERG-VVSFDSY--IRQVRI--------LAREQFFHRDLLVKLEVKRGF 320 (322)
Q Consensus 265 l~Aed~AieDtIy~L~~aL~~g-~I~ld~f--lK~vR~--------LaReQF~~Rali~Ki~~~~gl 320 (322)
|++.=.|+.|==.+|...|..+ +|-+|-| |-.+|. +=.+-..+.-|..||.+.|.+
T Consensus 592 L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av 658 (697)
T PF09726_consen 592 LMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAV 658 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444456666666667777666 4555544 222221 112445667778888877654
No 159
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=24.90 E-value=1.1e+02 Score=17.37 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=25.7
Q ss_pred hHHHHHHhhhhhhhhHHHHHHHHHHHhcC
Q 047127 258 ESKAELEGSAADEAIEDVIYALDKALERG 286 (322)
Q Consensus 258 l~~QLlel~Aed~AieDtIy~L~~aL~~g 286 (322)
.++-|++.+++..-.+++...+.+..++|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46788999999999999999999988877
No 160
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=24.74 E-value=4e+02 Score=22.01 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=18.8
Q ss_pred hhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 047127 269 DEAIEDVIYALDKALERGVVSFDSYIRQVRILARE 303 (322)
Q Consensus 269 d~AieDtIy~L~~aL~~g~I~ld~flK~vR~LaRe 303 (322)
+.-++||+.+|.+.++.=.-.++..-+....+.++
T Consensus 89 E~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~ 123 (140)
T PRK03947 89 EKDLDEAIEILDKRKEELEKALEKLEEALQKLASR 123 (140)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777776654433444444444444443
No 161
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=24.66 E-value=8.5e+02 Score=25.72 Aligned_cols=51 Identities=20% Similarity=0.114 Sum_probs=30.8
Q ss_pred hhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 047127 268 ADEAIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLVKLEVKRGF 320 (322)
Q Consensus 268 ed~AieDtIy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Rali~Ki~~~~gl 320 (322)
++.+=.||+..|...++.=.--+|.|= +-.|=|.+=.+|+|+.|....+++
T Consensus 116 kEkek~d~~~wi~~~ideLe~q~d~~e--a~~~e~~~erh~~H~~~lEliLr~ 166 (575)
T KOG2150|consen 116 KEKEKRDTMDWISNQIDELERQVDSFE--AEELERFIERHRWHQQKLELILRL 166 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888777654322222221 155666667778888887665543
No 162
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=24.53 E-value=4.2e+02 Score=23.70 Aligned_cols=8 Identities=13% Similarity=0.285 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 047127 180 MLHYDMGA 187 (322)
Q Consensus 180 ~L~~~l~~ 187 (322)
-|+.+|++
T Consensus 90 ~l~~RL~k 97 (190)
T PF05266_consen 90 FLRSRLNK 97 (190)
T ss_pred HHHHHHHH
Confidence 33333333
No 163
>COG1415 Uncharacterized conserved protein [Function unknown]
Probab=24.39 E-value=99 Score=30.47 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 047127 270 EAIEDVIYALDKALERGVVSFDSYIRQVRILAREQ 304 (322)
Q Consensus 270 ~AieDtIy~L~~aL~~g~I~ld~flK~vR~LaReQ 304 (322)
...+++|++|.+++++.++.-...++.+|.|+|.-
T Consensus 331 ~~yde~I~~l~~~ve~a~lg~~e~~~~lkrl~e~~ 365 (373)
T COG1415 331 KTYDELIEFLEELVEKARLGRQEKLRALKRLAELS 365 (373)
T ss_pred hhHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHhh
Confidence 46689999999999999999999999999998864
No 164
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=24.36 E-value=2.8e+02 Score=20.10 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 047127 194 EETEALLTIQVELKNRARKLKETVVELAGKADVLTN 229 (322)
Q Consensus 194 ~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~ 229 (322)
.++..+.+...++++..+.|+.+++.+...-+.+++
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~ 59 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERLKNDPDYIEK 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 344444444444444444455555555333333333
No 165
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=24.33 E-value=3.2e+02 Score=24.35 Aligned_cols=44 Identities=23% Similarity=0.182 Sum_probs=29.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCc
Q 047127 187 ALQARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDP 237 (322)
Q Consensus 187 ~~~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~~ 237 (322)
.+.+.+.+++++|...|..| +.+......+.+.|++-.+++.+.
T Consensus 123 rLQqssD~~lD~Lr~qq~~L-------q~qL~~T~RKLEnLTDIERQLSSR 166 (179)
T PF13942_consen 123 RLQQSSDSELDALRQQQQRL-------QYQLDTTTRKLENLTDIERQLSSR 166 (179)
T ss_pred HHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhhHHHHHHhcc
Confidence 34456667778777766655 455555566667788887777664
No 166
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=24.11 E-value=4.6e+02 Score=26.86 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=20.0
Q ss_pred CcccccccCChhHHHHHHhhhhhhhhHHHHHHHHHHH
Q 047127 247 RVEDAFEAIDAESKAELEGSAADEAIEDVIYALDKAL 283 (322)
Q Consensus 247 dide~v~~~~~l~~QLlel~Aed~AieDtIy~L~~aL 283 (322)
++.++....+-+..|+-++.++..+++..+.-+.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 161 (525)
T TIGR02231 125 DLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQL 161 (525)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555566666666666555555555544
No 167
>PRK14127 cell division protein GpsB; Provisional
Probab=24.03 E-value=2.9e+02 Score=22.61 Aligned_cols=21 Identities=19% Similarity=0.104 Sum_probs=9.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 047127 186 GALQARTEEETEALLTIQVEL 206 (322)
Q Consensus 186 ~~~~~~~~~e~~~L~~~q~~L 206 (322)
.+++++...+++.+..-..+|
T Consensus 29 D~FLd~V~~dye~l~~e~~~L 49 (109)
T PRK14127 29 DKFLDDVIKDYEAFQKEIEEL 49 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555544433333
No 168
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=23.93 E-value=2.6e+02 Score=22.50 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCc
Q 047127 211 RKLKETVVELAGKADVLTNWLKVNGDP 237 (322)
Q Consensus 211 ~~Le~~~~~l~~~~~~L~~~~~e~~~~ 237 (322)
+.|.+++.+.+.|+..|++.++..+.+
T Consensus 71 ~~l~RRiDYV~~Ni~tleKql~~aE~k 97 (99)
T PF13758_consen 71 DVLSRRIDYVQQNIETLEKQLEAAENK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568999999999999999998877654
No 169
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=23.86 E-value=3.9e+02 Score=32.44 Aligned_cols=9 Identities=11% Similarity=-0.167 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 047127 137 NDLVHNLVQ 145 (322)
Q Consensus 137 ~~lv~~l~~ 145 (322)
++.|.....
T Consensus 691 LEgIRicR~ 699 (1930)
T KOG0161|consen 691 LEGIRICRQ 699 (1930)
T ss_pred HHHHHHHHh
Confidence 333333333
No 170
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=23.76 E-value=5.2e+02 Score=26.25 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhccC
Q 047127 137 NDLVHNLVQIFSHD 150 (322)
Q Consensus 137 ~~lv~~l~~~f~~~ 150 (322)
.++||+|...|+-+
T Consensus 281 gdlVQsla~fl~i~ 294 (431)
T PF14782_consen 281 GDLVQSLASFLNIT 294 (431)
T ss_pred HHHHHHHHHHhCCc
Confidence 67999999888754
No 171
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.67 E-value=2.3e+02 Score=30.57 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=9.1
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 047127 213 LKETVVELAGKADVLTNWLK 232 (322)
Q Consensus 213 Le~~~~~l~~~~~~L~~~~~ 232 (322)
||+.+.+.+.+...+++-+.
T Consensus 493 LEkrL~eE~~~R~~lEkQL~ 512 (697)
T PF09726_consen 493 LEKRLAEERRQRASLEKQLQ 512 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 172
>PRK14755 transcriptional regulatory protein PufK; Provisional
Probab=23.42 E-value=66 Score=18.96 Aligned_cols=17 Identities=24% Similarity=0.675 Sum_probs=13.2
Q ss_pred cccCCccchHhHHHHHHHHHHh
Q 047127 22 LSYADPNQKWLIRKQLLSLLQN 43 (322)
Q Consensus 22 ~~Y~~~~~~~~v~~dv~~~l~~ 43 (322)
++|++|+. +++..+|..
T Consensus 2 vpyrnprh-----qhvasvlrs 18 (26)
T PRK14755 2 VPYRNPRH-----QHVASVLRS 18 (26)
T ss_pred CCccCchH-----HHHHHHHHc
Confidence 47999876 688888864
No 173
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=23.40 E-value=7.4e+02 Score=24.81 Aligned_cols=17 Identities=6% Similarity=0.116 Sum_probs=11.9
Q ss_pred CcccccccCChhHHHHH
Q 047127 247 RVEDAFEAIDAESKAEL 263 (322)
Q Consensus 247 dide~v~~~~~l~~QLl 263 (322)
=|+.+..|..|.+....
T Consensus 412 vIs~A~~P~~p~~Pk~~ 428 (458)
T COG3206 412 VISPAVPPLSPSKPKKA 428 (458)
T ss_pred EeccccCCCCCCCChHH
Confidence 67778888777665543
No 174
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=23.35 E-value=6.7e+02 Score=24.07 Aligned_cols=35 Identities=20% Similarity=0.536 Sum_probs=18.0
Q ss_pred CceeccccccccCCCC-CH-------HHHHHHHHHh-hccCCCCC
Q 047127 119 GTITTPYLQTWSYPGY-NL-------NDLVHNLVQI-FSHDHPLI 154 (322)
Q Consensus 119 G~v~~pyL~~W~~~~s-~L-------~~lv~~l~~~-f~~~pPl~ 154 (322)
|-|.+|.|.--.+ .| -| -.++..+... +...||+|
T Consensus 63 ~~~~~P~Lely~~-~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf 106 (325)
T PF08317_consen 63 GYCTVPMLELYQF-SCRELKKYISEGRQIFEEIEEETYESNPPLF 106 (325)
T ss_pred hccCChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 5566788773332 12 22 3345555433 44667776
No 175
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=23.25 E-value=4.6e+02 Score=22.12 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=6.6
Q ss_pred HHHHhHHHHHHHHHHH
Q 047127 218 VELAGKADVLTNWLKV 233 (322)
Q Consensus 218 ~~l~~~~~~L~~~~~e 233 (322)
..|...++.|...+++
T Consensus 112 ~~L~~rId~L~~~v~~ 127 (132)
T PF05597_consen 112 EALSARIDQLTAQVER 127 (132)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 176
>PRK14148 heat shock protein GrpE; Provisional
Probab=23.08 E-value=4.4e+02 Score=23.77 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047127 197 EALLTIQVELKNRARKLKETVVEL 220 (322)
Q Consensus 197 ~~L~~~q~~L~~~~~~Le~~~~~l 220 (322)
+.+.+.+.+..+.+...++++..+
T Consensus 61 d~~lR~~Ae~eN~rKR~~rE~e~~ 84 (195)
T PRK14148 61 DEALRAKAEMENIRKRAERDVSNA 84 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544443
No 177
>PF13171 DUF4004: Protein of unknown function (DUF4004)
Probab=23.04 E-value=1.5e+02 Score=26.97 Aligned_cols=30 Identities=23% Similarity=0.505 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 047127 275 VIYALDKALERGVVSFDSYIRQVRILAREQF 305 (322)
Q Consensus 275 tIy~L~~aL~~g~I~ld~flK~vR~LaReQF 305 (322)
++|.|++.|+.|.|++|+ .|.+-.+-.++|
T Consensus 120 ~lyvl~~ll~sg~is~eE-~k~l~~~l~~~~ 149 (199)
T PF13171_consen 120 FLYVLEKLLQSGEISLEE-GKMLLQFLEENY 149 (199)
T ss_pred HHHHHHHHHHhCCCCHHH-HHHHHHHHHHHH
Confidence 578999999999999999 676665555543
No 178
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=22.92 E-value=4.4e+02 Score=23.97 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=4.5
Q ss_pred HHHhHHHHHHH
Q 047127 189 QARTEEETEAL 199 (322)
Q Consensus 189 ~~~~~~e~~~L 199 (322)
++.+..+++.+
T Consensus 145 L~~ANeei~~v 155 (207)
T PF05010_consen 145 LEKANEEIAQV 155 (207)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 179
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=22.92 E-value=6.4e+02 Score=23.69 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 047127 173 ALDRFSGMLHYDMGALQARTEEETEALLTIQVELKNR 209 (322)
Q Consensus 173 l~~~~~~~L~~~l~~~~~~~~~e~~~L~~~q~~L~~~ 209 (322)
-+|.|+.+|...+.+..+.--+++..+..++.+|...
T Consensus 43 ~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a 79 (291)
T PF10475_consen 43 YLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEA 79 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666555555555666666666655444
No 180
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.83 E-value=5.4e+02 Score=22.82 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHc
Q 047127 211 RKLKETVVELAGKADVLTNWLKVN 234 (322)
Q Consensus 211 ~~Le~~~~~l~~~~~~L~~~~~e~ 234 (322)
..++.++..|+.....|+..+.++
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l 146 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQEL 146 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554444444
No 181
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=22.72 E-value=9.7e+02 Score=26.51 Aligned_cols=141 Identities=16% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCccccccccCCCcccccc
Q 047127 174 LDRFSGMLHYDMGALQARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDPKAIGVILGDRVEDAFE 253 (322)
Q Consensus 174 ~~~~~~~L~~~l~~~~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~~~~~~~~~~~dide~v~ 253 (322)
+..+...+ ..+...+.....++..+......+......++..+..+..++..+...+.++...+..+... +..+-.
T Consensus 784 ~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~---~~~~~~ 859 (1179)
T TIGR02168 784 IEELEAQI-EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED---IESLAA 859 (1179)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q ss_pred cCChhHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047127 254 AIDAESKAELEGSAADEAIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLVKLEVKR 318 (322)
Q Consensus 254 ~~~~l~~QLlel~Aed~AieDtIy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Rali~Ki~~~~ 318 (322)
.-.-+..++-++..+-..++..+..+...+..-.-.++..-+.++.+-++.--.+.-+.++...+
T Consensus 860 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 924 (1179)
T TIGR02168 860 EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKL 924 (1179)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 182
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=22.70 E-value=8.1e+02 Score=25.74 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcCCccccccccCCCcccccccCChhHHHHHHhhhhhhhhHHHHHHHH
Q 047127 210 ARKLKETVVELAGKADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAADEAIEDVIYALD 280 (322)
Q Consensus 210 ~~~Le~~~~~l~~~~~~L~~~~~e~~~~~~~~~~~~~dide~v~~~~~l~~QLlel~Aed~AieDtIy~L~ 280 (322)
..+++.++..|..+++.++..+.+..+.... ..+++++....-+-+-..+--+.+...+++|-...|-
T Consensus 108 ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~---~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk 175 (546)
T KOG0977|consen 108 RAKLEIEITKLREELKELRKKLEKAEKERRG---AREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLK 175 (546)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh---hHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777766655433210 0116666655555555666666666666666655543
No 183
>PF13864 Enkurin: Calmodulin-binding
Probab=22.48 E-value=2.2e+02 Score=22.41 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Q 047127 206 LKNRARKLKETVVELAGKADVLT 228 (322)
Q Consensus 206 L~~~~~~Le~~~~~l~~~~~~L~ 228 (322)
.+++++.||.++.+|+..|..++
T Consensus 72 ~~~rK~~lE~~L~qlE~dI~~ls 94 (98)
T PF13864_consen 72 KKRRKEELEKELKQLEKDIKKLS 94 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 35566888998888888877765
No 184
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=22.39 E-value=3.3e+02 Score=28.86 Aligned_cols=24 Identities=25% Similarity=0.149 Sum_probs=14.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Q 047127 187 ALQARTEEETEALLTIQVELKNRA 210 (322)
Q Consensus 187 ~~~~~~~~e~~~L~~~q~~L~~~~ 210 (322)
..++..+.||+.+....+++++.-
T Consensus 100 ~krqel~seI~~~n~kiEelk~~i 123 (907)
T KOG2264|consen 100 VKRQELNSEIEEINTKIEELKRLI 123 (907)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345556666666666666665543
No 185
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=22.33 E-value=1e+03 Score=26.54 Aligned_cols=8 Identities=38% Similarity=0.675 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 047127 35 KQLLSLLQ 42 (322)
Q Consensus 35 ~dv~~~l~ 42 (322)
..++..|.
T Consensus 561 ~~~i~~l~ 568 (1164)
T TIGR02169 561 KEAIELLK 568 (1164)
T ss_pred HHHHHHHH
Confidence 34444444
No 186
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.25 E-value=5.4e+02 Score=27.13 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=15.2
Q ss_pred HHHHHHHHhcCCCCCCcccCCccchHhHHHHHHHHHH
Q 047127 6 SIQFIDTALWCTTPFRLSYADPNQKWLIRKQLLSLLQ 42 (322)
Q Consensus 6 v~~wL~~vl~~~~~~~~~Y~~~~~~~~v~~dv~~~l~ 42 (322)
.-.|||..|.| .|.-| .+| -.||..+|.
T Consensus 108 iFkfLY~~Ldp------~y~f~-~r~--EeEV~~ilK 135 (581)
T KOG0995|consen 108 IFKFLYGFLDP------DYEFP-ERI--EEEVVQILK 135 (581)
T ss_pred HHHHHHhccCC------Ccccc-hhH--HHHHHHHHH
Confidence 45566666665 45443 333 456666655
No 187
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.98 E-value=7.2e+02 Score=23.96 Aligned_cols=8 Identities=25% Similarity=0.605 Sum_probs=4.7
Q ss_pred cccccccC
Q 047127 124 PYLQTWSY 131 (322)
Q Consensus 124 pyL~~W~~ 131 (322)
+.+.+|..
T Consensus 78 ~~~~rwrd 85 (300)
T KOG2629|consen 78 NVLRRWRD 85 (300)
T ss_pred cchhhHHH
Confidence 45667764
No 188
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=21.98 E-value=74 Score=24.68 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 047127 270 EAIEDVIYALDKALERGVVSFDSYIRQVRILARE 303 (322)
Q Consensus 270 ~AieDtIy~L~~aL~~g~I~ld~flK~vR~LaRe 303 (322)
..++..+..++.- +.|.|+++.|++.+..||-.
T Consensus 52 ~~~~~ll~~~D~d-~DG~I~f~EF~~l~~~l~~~ 84 (89)
T cd05023 52 GVLDRMMKKLDLN-SDGQLDFQEFLNLIGGLAVA 84 (89)
T ss_pred HHHHHHHHHcCCC-CCCcCcHHHHHHHHHHHHHH
Confidence 4555555554442 55799999999999988754
No 189
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=21.85 E-value=2.8e+02 Score=26.65 Aligned_cols=41 Identities=7% Similarity=0.095 Sum_probs=35.4
Q ss_pred CcccccccCChhHHHHHHhhhhhhhhHHHHHHHHHHHhcCC
Q 047127 247 RVEDAFEAIDAESKAELEGSAADEAIEDVIYALDKALERGV 287 (322)
Q Consensus 247 dide~v~~~~~l~~QLlel~Aed~AieDtIy~L~~aL~~g~ 287 (322)
||+|=+.--..-..|.++++.+.-++-=-+++|.+-|+|+.
T Consensus 216 DI~EEldRL~sHv~~~~~iL~~~g~vGRkLDFl~QE~nREa 256 (290)
T COG1561 216 DIAEELDRLKSHVKEFRNILEKGGPVGRKLDFLMQEFNREA 256 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHhHHH
Confidence 77777766677788999999999999999999999999973
No 190
>PRK00106 hypothetical protein; Provisional
Probab=21.79 E-value=9.4e+02 Score=25.19 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=18.0
Q ss_pred hhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 047127 268 ADEAIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHR 308 (322)
Q Consensus 268 ed~AieDtIy~L~~aL~~g~I~ld~flK~vR~LaReQF~~R 308 (322)
.+.|=+-.+..+..-+++ ....++|..-.-+++.--.+
T Consensus 167 ~~eak~~l~~~~~~~~~~---~~~~~i~~~e~~a~~~a~~~ 204 (535)
T PRK00106 167 QAEAREIILAETENKLTH---EIATRIREAEREVKDRSDKM 204 (535)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333 35556666555555554443
No 191
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.60 E-value=8.1e+02 Score=25.21 Aligned_cols=49 Identities=16% Similarity=0.105 Sum_probs=29.9
Q ss_pred Ccccccc---cCChhHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 047127 247 RVEDAFE---AIDAESKAELEGSAADEAIEDVIYALDKALERGVVSFDSYIRQVRILAR 302 (322)
Q Consensus 247 dide~v~---~~~~l~~QLlel~Aed~AieDtIy~L~~aL~~g~I~ld~flK~vR~LaR 302 (322)
-+|+++. -.++.+++.|+++|..+++ ++..+..-...| .+-|.||.|-.
T Consensus 432 vtdellf~sakhddhvR~aykllt~iH~n--c~ei~E~i~~tg-----~~~revrdlE~ 483 (521)
T KOG1937|consen 432 VTDELLFMSAKHDDHVRLAYKLLTRIHLN--CMEILEMIRETG-----ALKREVRDLES 483 (521)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHH--HHHHHHHHHHcc-----hHHHHHHHHHH
Confidence 4566554 3488899999999999875 333333333344 34455555543
No 192
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.49 E-value=3.7e+02 Score=20.39 Aligned_cols=7 Identities=14% Similarity=0.102 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 047127 179 GMLHYDM 185 (322)
Q Consensus 179 ~~L~~~l 185 (322)
++|-.++
T Consensus 7 ekLE~Ki 13 (79)
T COG3074 7 EKLEAKV 13 (79)
T ss_pred HHHHHHH
Confidence 3333333
No 193
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=21.44 E-value=4.4e+02 Score=21.22 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 047127 194 EETEALLTIQVELKNRARKLKETVVELAGKA 224 (322)
Q Consensus 194 ~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~ 224 (322)
.|.+.|..++..|.+..+.-+.++.++++++
T Consensus 69 ~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 69 KEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555555553333444444444443
No 194
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.41 E-value=6.3e+02 Score=23.04 Aligned_cols=10 Identities=30% Similarity=0.584 Sum_probs=5.5
Q ss_pred HHhhccCCCC
Q 047127 144 VQIFSHDHPL 153 (322)
Q Consensus 144 ~~~f~~~pPl 153 (322)
-++|+.-.|=
T Consensus 2 nRiFG~~k~k 11 (218)
T KOG1655|consen 2 NRIFGRGKPK 11 (218)
T ss_pred cccccCCCCC
Confidence 3566666543
No 195
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=21.16 E-value=1e+03 Score=27.20 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHcCCccc
Q 047127 212 KLKETVVELAGKADVLTNWLKVNGDPKA 239 (322)
Q Consensus 212 ~Le~~~~~l~~~~~~L~~~~~e~~~~~~ 239 (322)
.++.++.+.++++..++..++.+++.+.
T Consensus 355 ~~~~~~~~~~n~i~~~k~~~d~l~k~I~ 382 (1074)
T KOG0250|consen 355 DLKEEIREIENSIRKLKKEVDRLEKQIA 382 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555443
No 196
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.15 E-value=4e+02 Score=27.41 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCc
Q 047127 211 RKLKETVVELAGKADVLTNWLKVNGDP 237 (322)
Q Consensus 211 ~~Le~~~~~l~~~~~~L~~~~~e~~~~ 237 (322)
..++++...|+++...++..+.++.++
T Consensus 112 ~~~~~~~~ql~~~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 112 QELTKEIEQLKSERQQLQGLIDQLQRR 138 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666655443
No 197
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=20.96 E-value=5.4e+02 Score=22.12 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=9.9
Q ss_pred CCCCHHHHHHHHHH
Q 047127 286 GVVSFDSYIRQVRI 299 (322)
Q Consensus 286 g~I~ld~flK~vR~ 299 (322)
|.+.++..|+..++
T Consensus 117 g~~Gldeqi~~lke 130 (155)
T PF06810_consen 117 GLKGLDEQIKALKE 130 (155)
T ss_pred ccccHHHHHHHHHh
Confidence 45678888887764
No 198
>PRK14151 heat shock protein GrpE; Provisional
Probab=20.91 E-value=4.3e+02 Score=23.33 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047127 197 EALLTIQVELKNRARKLKETV 217 (322)
Q Consensus 197 ~~L~~~q~~L~~~~~~Le~~~ 217 (322)
+.+.+.+.+..+.+...++++
T Consensus 41 d~~lR~~Ae~eN~rkR~~kE~ 61 (176)
T PRK14151 41 DQSLRAAADLQNVRRRAEQDV 61 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333
No 199
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=20.90 E-value=3.9e+02 Score=27.45 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC
Q 047127 203 QVELKNRARKLKETVVELAGKADVLTNWLKVNGD 236 (322)
Q Consensus 203 q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~ 236 (322)
.++|..+++.||.++..|+.+.+.|++.+.....
T Consensus 436 ~~~l~~~q~~le~qI~~Le~kl~~l~~~l~s~~~ 469 (489)
T KOG3684|consen 436 LQELHSRQEELEKQIDTLESKLEALTASLSSLPG 469 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 3445555556666666666666666665554443
No 200
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=20.89 E-value=5.8e+02 Score=28.05 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=15.8
Q ss_pred HHhcCCCCHHHHHHHHHHHHHH
Q 047127 282 ALERGVVSFDSYIRQVRILARE 303 (322)
Q Consensus 282 aL~~g~I~ld~flK~vR~LaRe 303 (322)
+|+.+.-++..|+|.|-.||++
T Consensus 273 ~~~~ei~p~~~~v~~vndla~q 294 (966)
T KOG4286|consen 273 ALRGEIAPLKENVSHVNDLARQ 294 (966)
T ss_pred HHHhhcchHhhchhhHHHHHHH
Confidence 4555555788888888888875
No 201
>PHA00728 hypothetical protein
Probab=20.87 E-value=26 Score=29.30 Aligned_cols=8 Identities=25% Similarity=0.659 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q 047127 273 EDVIYALD 280 (322)
Q Consensus 273 eDtIy~L~ 280 (322)
.|||+||+
T Consensus 60 kDTMfYLs 67 (151)
T PHA00728 60 KDTMFYLS 67 (151)
T ss_pred ccceEEec
Confidence 34555544
No 202
>PF07962 Swi3: Replication Fork Protection Component Swi3; InterPro: IPR012923 Replication fork pausing is required to initiate recombination events. More specifically, Swi1 is required for recombination near the mat1 locus. Swi3 has been found to co-purify with Swi1. Together they define a fork protection complex that coordinates leading- and lagging-strand synthesis and stabilises stalled replication forks []. This complex is required for accurate replication, fork protection and replication checkpoint signalling [, ].; GO: 0006974 response to DNA damage stimulus, 0007049 cell cycle, 0048478 replication fork protection, 0005634 nucleus
Probab=20.85 E-value=1.2e+02 Score=23.38 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047127 287 VVSFDSYIRQVRILAREQFFHRDLLVKLEVK 317 (322)
Q Consensus 287 ~I~ld~flK~vR~LaReQF~~Rali~Ki~~~ 317 (322)
..+|+.|+..|..||+. =..|..+++++..
T Consensus 52 k~~F~d~i~~vE~LG~~-k~v~~~~~~lr~~ 81 (83)
T PF07962_consen 52 KASFEDFIERVEKLGKK-KRVRNYRRELREE 81 (83)
T ss_pred CCCHHHHHHHHHHHcCC-HHHHHHHHHHHhh
Confidence 47999999999999998 7788888887754
No 203
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=20.83 E-value=2.7e+02 Score=23.43 Aligned_cols=38 Identities=13% Similarity=0.220 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCc
Q 047127 200 LTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDP 237 (322)
Q Consensus 200 ~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~~ 237 (322)
..++..|...+++++.++..+++..+.++..++++...
T Consensus 80 ~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~ 117 (131)
T KOG1760|consen 80 DKLQDQLEEKKETLEKEIEELESELESISARMDELKKV 117 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777778877777777777777766543
No 204
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=20.79 E-value=3.6e+02 Score=20.00 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 047127 199 LLTIQVELKNRARKLKETVVELAG 222 (322)
Q Consensus 199 L~~~q~~L~~~~~~Le~~~~~l~~ 222 (322)
|...+..|++....+.++-..|.+
T Consensus 19 L~~EN~~Lr~q~~~~~~ER~~L~e 42 (65)
T TIGR02449 19 LKSENRLLRAQEKTWREERAQLLE 42 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 205
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=20.67 E-value=2.6e+02 Score=23.34 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHc
Q 047127 209 RARKLKETVVELAGKADVLTNWLKVN 234 (322)
Q Consensus 209 ~~~~Le~~~~~l~~~~~~L~~~~~e~ 234 (322)
..++||.++.+|++-+..|+.|++.+
T Consensus 99 flEkLE~EvreLEQlV~DLE~WLDal 124 (135)
T PF15466_consen 99 FLEKLEKEVRELEQLVRDLEEWLDAL 124 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888888888888899998765
No 206
>PRK14162 heat shock protein GrpE; Provisional
Probab=20.65 E-value=5.2e+02 Score=23.29 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047127 197 EALLTIQVELKNRARKLKE 215 (322)
Q Consensus 197 ~~L~~~q~~L~~~~~~Le~ 215 (322)
+.+.+.+.+..+.+...++
T Consensus 60 d~~lR~~AEfeN~rkR~~k 78 (194)
T PRK14162 60 DKYLRSQAEIQNMQNRYAK 78 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333333
No 207
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=20.64 E-value=1e+02 Score=23.91 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=23.4
Q ss_pred hhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 047127 269 DEAIEDVIYALDKALERGVVSFDSYIRQVRILA 301 (322)
Q Consensus 269 d~AieDtIy~L~~aL~~g~I~ld~flK~vR~La 301 (322)
+..+++.|.-++.. ..|.|++++|+.-+..|+
T Consensus 52 ~~~v~~i~~elD~n-~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 52 PMLVDKIMNDLDSN-KDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHH
Confidence 34566666666542 457999999999888876
No 208
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.43 E-value=98 Score=24.32 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=19.9
Q ss_pred ceeecCCCCceeEEEEEEeeeec
Q 047127 52 DTFTHNDGTAVNLFKVSGCFHVS 74 (322)
Q Consensus 52 ~~~t~~dG~~~~Ll~l~Gtipv~ 74 (322)
..|||..+..+.+-|+.|.+-|.
T Consensus 33 geytFgTa~~E~Mtvv~Gal~v~ 55 (94)
T COG3123 33 GEYTFGTAAPEEMTVVSGALTVL 55 (94)
T ss_pred eeEEeccCCceEEEEEeeEEEEE
Confidence 46899999999999999988776
No 209
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=20.41 E-value=3.9e+02 Score=20.25 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=9.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHcC
Q 047127 214 KETVVELAGKADVLTNWLKVNG 235 (322)
Q Consensus 214 e~~~~~l~~~~~~L~~~~~e~~ 235 (322)
...+..+.+.++.|+..+.+++
T Consensus 56 ~~~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 56 KAVLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444443
No 210
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=20.34 E-value=2.1e+02 Score=21.88 Aligned_cols=22 Identities=9% Similarity=0.074 Sum_probs=10.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHc
Q 047127 213 LKETVVELAGKADVLTNWLKVN 234 (322)
Q Consensus 213 Le~~~~~l~~~~~~L~~~~~e~ 234 (322)
|+..+..+....+.+...+.+.
T Consensus 40 l~~klDa~~~~l~~l~~~V~~I 61 (75)
T PF05531_consen 40 LNKKLDAQSAQLTTLNTKVNEI 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 211
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.26 E-value=4.8e+02 Score=23.40 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Q 047127 194 EETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNG 235 (322)
Q Consensus 194 ~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~ 235 (322)
+|.+.|-.+|+||.+-+-.|...|....+.-++|.+.+++-+
T Consensus 134 ~ead~l~kvQ~EldETKiiLhkTiesVL~RgEKLDdLV~KSe 175 (198)
T KOG0861|consen 134 AEADPLLKVQNELDETKIILHKTIESVLERGEKLDDLVSKSE 175 (198)
T ss_pred hhhChHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 566777788888887776677666666665666666655443
No 212
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=20.19 E-value=7.1e+02 Score=25.77 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 047127 174 LDRFSGMLHYDMGALQARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKV 233 (322)
Q Consensus 174 ~~~~~~~L~~~l~~~~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e 233 (322)
++.+.+.|++++.. ........+.+.+-+.++......++-.+..|.+.+..|++.+++
T Consensus 434 vdrl~~~L~qk~~~-~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 434 VDRLVESLQQKLKQ-EEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
No 213
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=20.18 E-value=5.3e+02 Score=28.23 Aligned_cols=10 Identities=10% Similarity=-0.028 Sum_probs=5.5
Q ss_pred eeEEEeeccc
Q 047127 80 IHFTLWLHEN 89 (322)
Q Consensus 80 iPi~Iwlp~~ 89 (322)
||..|-+..+
T Consensus 317 Vpndi~l~~~ 326 (782)
T PRK00409 317 VPKDISLGFD 326 (782)
T ss_pred ECceeEECCC
Confidence 5666655543
No 214
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.14 E-value=1.2e+03 Score=25.89 Aligned_cols=10 Identities=40% Similarity=0.650 Sum_probs=6.1
Q ss_pred eccccccccC
Q 047127 122 TTPYLQTWSY 131 (322)
Q Consensus 122 ~~pyL~~W~~ 131 (322)
++..|-.|-+
T Consensus 501 lLmlL~~WL~ 510 (970)
T KOG0946|consen 501 LLMLLITWLY 510 (970)
T ss_pred HHHHHHHHHc
Confidence 5566667754
No 215
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.09 E-value=2.8e+02 Score=28.52 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=24.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 047127 186 GALQARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTN 229 (322)
Q Consensus 186 ~~~~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~ 229 (322)
+..++..+.|++.+.+...++++.-+.|+.+++.|+.+.+.+..
T Consensus 82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33344445555555555555555556667777777666544333
Done!