Query 047127
Match_columns 322
No_of_seqs 143 out of 293
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 13:39:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3obq_A Tumor susceptibility ge 100.0 2.2E-44 7.5E-49 306.5 10.4 137 6-157 8-146 (146)
2 3r3q_A Suppressor protein STP2 100.0 5.1E-43 1.8E-47 302.8 13.1 141 2-152 11-159 (162)
3 2p22_A Suppressor protein STP2 100.0 4E-31 1.4E-35 229.5 17.4 143 172-318 19-173 (174)
4 2f6m_A Suppressor protein STP2 99.9 3.6E-28 1.2E-32 177.5 8.8 63 256-318 2-64 (65)
5 2gjd_A Ubiquitin-conjugating e 98.9 1.5E-08 5.2E-13 86.7 13.0 107 33-149 9-122 (157)
6 2grr_A Ubiquitin-conjugating e 98.9 2E-08 7E-13 86.2 13.2 107 33-149 12-125 (161)
7 2aak_A UBC1, ubiquitin conjuga 98.9 1.6E-08 5.4E-13 86.1 10.9 102 33-149 9-115 (152)
8 1jat_A Ubiquitin-conjugating e 98.8 4.3E-08 1.5E-12 83.6 10.5 102 33-149 10-116 (155)
9 3iv1_A Tumor susceptibility ge 98.8 5.3E-08 1.8E-12 73.3 9.6 67 172-238 3-76 (78)
10 2c4o_A Ubiquitin-conjugating e 98.7 4.6E-08 1.6E-12 84.4 10.6 112 23-149 14-130 (165)
11 1ayz_A UBC2, ubiquitin-conjuga 98.7 6.8E-08 2.3E-12 83.7 10.9 102 33-149 9-115 (169)
12 2e2c_A Ubiquitin conjugating e 98.7 8.7E-08 3E-12 81.8 11.4 102 33-149 14-120 (156)
13 1z2u_A Ubiquitin-conjugating e 98.7 6.4E-08 2.2E-12 82.1 10.4 102 33-149 9-115 (150)
14 1y8x_A Ubiquitin-conjugating e 98.7 6.8E-08 2.3E-12 82.9 10.2 79 63-149 33-115 (160)
15 1wzv_A Ubiquitin-conjugating e 98.7 3.6E-08 1.2E-12 84.1 8.2 102 33-149 9-116 (155)
16 2c2v_B Ubiquitin-conjugating e 98.7 1.1E-07 3.9E-12 80.9 11.2 102 33-149 10-116 (154)
17 3rcz_B SUMO-conjugating enzyme 98.7 2.7E-07 9.1E-12 79.5 13.4 107 33-149 15-128 (163)
18 2a7l_A Hypothetical ubiquitin- 98.7 9.4E-08 3.2E-12 80.0 10.2 104 33-148 27-136 (136)
19 1i7k_A Ubiquitin-conjugating e 98.7 2.1E-07 7.1E-12 81.4 12.5 102 33-149 35-141 (179)
20 2r0j_A Ubiquitin carrier prote 98.7 1.2E-07 4.3E-12 80.2 10.6 79 63-149 29-112 (149)
21 1c4z_D UBCH7, ubiquitin conjug 98.7 8.1E-08 2.8E-12 81.8 9.3 78 63-149 31-114 (154)
22 2nvu_C NEDD8-conjugating enzym 98.7 8.7E-08 3E-12 83.8 9.5 79 63-149 53-135 (180)
23 2ayv_A Ubiquitin-conjugating e 98.6 2.7E-07 9.2E-12 79.7 11.6 103 32-149 25-132 (166)
24 1zdn_A Ubiquitin-conjugating e 98.6 7.6E-08 2.6E-12 82.4 7.8 102 33-149 18-124 (158)
25 2bep_A Ubiquitin-conjugating e 98.6 1.3E-07 4.4E-12 81.0 9.1 80 63-150 39-124 (159)
26 4gpr_A Ubiquitin-conjugating e 98.6 1.4E-07 4.8E-12 80.1 8.7 79 63-149 32-115 (151)
27 1fxt_A Ubiquitin-conjugating e 98.6 1E-07 3.6E-12 80.7 7.8 80 63-150 30-115 (149)
28 2fo3_A Ubiquitin-conjugating e 98.6 1.6E-07 5.5E-12 77.3 8.7 103 33-149 11-118 (125)
29 3h8k_A Ubiquitin-conjugating e 98.6 2E-07 6.8E-12 80.1 9.3 103 33-149 8-128 (164)
30 3bzh_A Ubiquitin-conjugating e 98.6 1.5E-07 5.3E-12 83.2 8.8 80 63-150 76-160 (194)
31 2q0v_A Ubiquitin-conjugating e 98.6 3E-07 1E-11 78.6 10.2 106 33-149 26-138 (156)
32 3o2u_A NEDD8-conjugating enzym 98.6 2.9E-07 1E-11 81.1 10.4 79 63-149 59-144 (190)
33 2ucz_A UBC7, ubiquitin conjuga 98.6 2.4E-07 8.2E-12 79.7 9.2 79 63-149 33-129 (165)
34 2h2y_A Ubiquitin-conjugating e 98.5 2.4E-07 8.4E-12 77.3 8.9 104 32-149 24-132 (136)
35 3ceg_A Baculoviral IAP repeat- 98.5 4.1E-06 1.4E-10 79.4 18.2 115 33-152 81-207 (323)
36 1yh2_A HSPC150 protein similar 98.5 3.3E-07 1.1E-11 79.3 8.9 79 63-149 32-119 (169)
37 2awf_A Ubiquitin-conjugating e 98.5 1.2E-06 4.1E-11 75.9 12.3 103 33-149 22-142 (172)
38 2pwq_A Ubiquitin conjugating e 98.5 4.6E-07 1.6E-11 81.5 9.9 102 33-149 28-135 (216)
39 2f4z_A Tgtwinscan_2721 - E2 do 98.5 6.7E-07 2.3E-11 79.0 10.5 79 63-149 73-157 (193)
40 4ddg_A Ubiquitin-conjugating e 98.5 8.2E-06 2.8E-10 79.5 19.0 103 33-150 8-115 (399)
41 3k9o_A Ubiquitin-conjugating e 98.5 4.5E-07 1.5E-11 80.5 8.9 80 63-150 36-121 (201)
42 3rz3_A Ubiquitin-conjugating e 98.5 5.8E-07 2E-11 78.7 9.3 79 63-149 36-132 (183)
43 2y9m_A Ubiquitin-conjugating e 98.4 5.5E-07 1.9E-11 78.1 8.7 80 63-149 46-132 (172)
44 1jat_B Ubiquitin-conjugating e 98.4 5.7E-07 2E-11 75.2 8.0 79 63-149 38-123 (138)
45 3fn1_B NEDD8-conjugating enzym 98.4 7.6E-07 2.6E-11 76.7 8.7 103 33-149 19-131 (167)
46 2f4w_A Ubiquitin-conjugating e 98.4 1.2E-06 4.1E-11 77.0 10.1 103 33-152 19-129 (187)
47 1tte_A Ubiquitin-conjugating e 98.4 5E-07 1.7E-11 81.1 7.7 79 63-149 31-115 (215)
48 2a4d_A Ubiquitin-conjugating e 98.4 1E-06 3.5E-11 75.6 9.2 81 63-151 57-145 (160)
49 1zuo_A Hypothetical protein LO 98.4 5.6E-07 1.9E-11 79.1 7.5 81 63-151 58-157 (186)
50 1yrv_A Ubiquitin-conjugating l 98.4 7.7E-07 2.6E-11 77.0 8.0 102 33-149 28-137 (169)
51 4ds2_A Ubiquitin-conjugating e 98.4 9.6E-07 3.3E-11 76.1 8.5 79 63-149 48-134 (167)
52 2hlw_A Ubiquitin-conjugating e 98.4 9.5E-07 3.3E-11 76.5 8.3 81 63-151 67-155 (170)
53 3e46_A Ubiquitin-conjugating e 98.3 1.2E-06 4E-11 80.6 8.9 80 63-150 88-173 (253)
54 2z5d_A Ubiquitin-conjugating e 98.3 6.7E-07 2.3E-11 78.1 6.3 79 63-149 49-134 (179)
55 2onu_A Ubiquitin-conjugating e 98.3 1.7E-06 5.7E-11 73.6 8.4 79 63-149 27-112 (152)
56 1yf9_A Ubiquitin carrier prote 98.2 1.6E-06 5.5E-11 75.1 6.2 97 33-148 17-120 (171)
57 2z6o_A UFM1-conjugating enzyme 97.3 0.00012 4.2E-09 62.8 3.1 59 76-140 81-143 (172)
58 3kpa_A Probable ubiquitin fold 94.7 0.0078 2.7E-07 50.7 0.9 49 75-131 82-130 (168)
59 2p22_C Protein SRN2; endosome, 91.2 1.5 5E-05 38.3 10.1 116 191-316 66-186 (192)
60 1deq_A Fibrinogen (alpha chain 85.2 3.6 0.00012 39.3 9.0 42 258-299 139-187 (390)
61 2f6m_B Vacuolar protein sortin 83.3 3.3 0.00011 32.8 6.7 47 255-301 20-66 (109)
62 2p22_B Vacuolar protein sortin 82.6 3.3 0.00011 33.2 6.6 47 255-301 29-75 (118)
63 2caz_B Vacuolar protein sortin 80.4 4.1 0.00014 34.2 6.6 47 255-301 37-83 (155)
64 3vmx_A Voltage-gated hydrogen 79.2 11 0.00039 25.2 7.2 43 193-235 3-45 (48)
65 3zqs_A E3 ubiquitin-protein li 77.2 3.6 0.00012 35.6 5.5 54 80-154 40-93 (186)
66 2day_A Ring finger protein 25; 73.5 2.6 8.9E-05 33.5 3.5 22 79-100 60-81 (128)
67 2yz0_A Serine/threonine-protei 73.4 3.4 0.00011 33.3 4.2 22 79-100 63-84 (138)
68 2ve7_A Kinetochore protein HEC 72.3 13 0.00046 34.4 8.6 39 260-300 270-308 (315)
69 2daw_A RWD domain containing p 71.6 3.4 0.00012 34.3 3.9 22 79-100 76-97 (154)
70 2jee_A YIIU; FTSZ, septum, coi 71.5 29 0.00099 25.9 10.3 60 172-232 6-72 (81)
71 2ebm_A RWD domain-containing p 70.8 3.1 0.00011 32.9 3.4 22 79-100 56-77 (128)
72 3a2a_A Voltage-gated hydrogen 68.7 17 0.00058 25.1 6.1 45 191-235 8-52 (58)
73 3ghg_A Fibrinogen alpha chain; 67.0 15 0.00051 36.6 7.8 43 258-300 136-185 (562)
74 2pnv_A Small conductance calci 65.8 19 0.00065 23.6 5.7 33 201-233 9-41 (43)
75 3he5_B Synzip2; heterodimeric 64.3 26 0.0009 22.9 6.1 38 195-232 11-48 (52)
76 3he5_A Synzip1; heterodimeric 60.9 31 0.0011 22.3 6.9 43 189-231 5-47 (49)
77 1ukx_A GCN2, GCN2 EIF2alpha ki 60.2 4.1 0.00014 32.6 2.1 22 79-100 64-85 (137)
78 2dax_A Protein C21ORF6; RWD do 60.0 5.2 0.00018 32.8 2.8 22 79-100 74-95 (152)
79 1ci6_A Transcription factor AT 58.1 45 0.0015 23.3 8.8 45 189-233 18-62 (63)
80 2w6a_A ARF GTPase-activating p 57.6 46 0.0016 23.3 7.5 42 186-227 19-60 (63)
81 2ebk_A RWD domain-containing p 53.8 4.6 0.00016 32.0 1.4 22 79-100 57-78 (128)
82 2p22_A Suppressor protein STP2 52.2 22 0.00075 30.3 5.4 59 179-237 15-78 (174)
83 4fla_A Regulation of nuclear P 51.2 47 0.0016 27.5 7.2 37 113-150 4-41 (152)
84 1m1j_A Fibrinogen alpha subuni 49.5 35 0.0012 33.4 6.9 19 127-145 40-61 (491)
85 4aj5_1 SKA3, spindle and kinet 48.2 93 0.0032 24.0 8.8 78 211-304 9-86 (101)
86 3nmd_A CGMP dependent protein 44.7 70 0.0024 23.2 6.3 24 213-236 45-68 (72)
87 3na7_A HP0958; flagellar bioge 44.6 84 0.0029 27.8 8.5 21 212-232 64-84 (256)
88 1wt6_A Myotonin-protein kinase 44.5 53 0.0018 24.4 5.7 17 217-233 54-70 (81)
89 1g6u_A Domain swapped dimer; d 43.9 62 0.0021 20.8 5.3 22 212-233 24-45 (48)
90 2oqq_A Transcription factor HY 43.7 64 0.0022 20.9 6.7 30 202-231 11-40 (42)
91 3hnw_A Uncharacterized protein 42.7 1.2E+02 0.0041 24.6 8.3 8 115-122 12-19 (138)
92 2ke4_A CDC42-interacting prote 39.6 1.2E+02 0.0043 23.0 8.0 24 213-236 67-90 (98)
93 2jee_A YIIU; FTSZ, septum, coi 38.8 1.2E+02 0.004 22.5 9.1 18 211-228 37-54 (81)
94 3u1c_A Tropomyosin alpha-1 cha 34.9 1.5E+02 0.0051 22.5 9.1 17 212-228 41-57 (101)
95 1go4_E MAD1 (mitotic arrest de 33.8 1.6E+02 0.0055 22.6 7.4 26 211-236 71-96 (100)
96 1ic2_A Tropomyosin alpha chain 32.3 1.4E+02 0.0049 21.6 8.3 6 182-187 5-10 (81)
97 3oja_A Leucine-rich immune mol 30.9 83 0.0028 30.1 6.5 21 217-237 444-464 (487)
98 3ghg_A Fibrinogen alpha chain; 30.2 1.5E+02 0.0051 29.5 8.0 14 257-270 180-193 (562)
99 2pnv_A Small conductance calci 29.8 73 0.0025 20.8 4.0 29 197-225 12-40 (43)
100 2ve7_C Kinetochore protein NUF 28.3 1E+02 0.0036 27.4 6.2 9 35-43 17-25 (250)
101 2dfs_A Myosin-5A; myosin-V, in 26.9 2.7E+02 0.0091 30.1 10.1 9 35-43 574-582 (1080)
102 4ani_A Protein GRPE; chaperone 26.6 1.6E+02 0.0053 25.7 6.9 37 183-219 66-102 (213)
103 2v66_B Nuclear distribution pr 26.5 2.3E+02 0.0079 22.1 8.5 24 212-235 39-62 (111)
104 3hnw_A Uncharacterized protein 26.2 2.6E+02 0.0087 22.5 9.3 20 214-233 109-128 (138)
105 2dq3_A Seryl-tRNA synthetase; 25.7 77 0.0026 30.4 5.2 64 213-283 42-105 (425)
106 3trt_A Vimentin; cytoskeleton, 25.6 1.8E+02 0.0061 20.5 9.2 18 214-231 55-72 (77)
107 1deq_A Fibrinogen (alpha chain 25.4 2E+02 0.0069 27.3 7.8 19 126-144 41-62 (390)
108 2v71_A Nuclear distribution pr 24.5 3.3E+02 0.011 23.2 8.5 27 211-237 91-117 (189)
109 3gpv_A Transcriptional regulat 24.3 1.8E+02 0.0063 23.3 6.6 35 204-238 98-132 (148)
110 3nso_A Protein S100-A3; EF-han 23.4 51 0.0017 24.9 2.8 34 269-303 52-85 (101)
111 1ykh_B RNA polymerase II holoe 23.3 2.8E+02 0.0097 22.0 11.3 37 194-230 89-125 (132)
112 3ibp_A Chromosome partition pr 22.6 76 0.0026 29.2 4.2 11 268-278 130-140 (302)
113 1yke_B RNA polymerase II holoe 22.6 3.2E+02 0.011 22.3 13.0 43 194-236 89-131 (151)
114 2v4h_A NF-kappa-B essential mo 22.5 2.8E+02 0.0095 21.7 7.4 23 211-233 86-108 (110)
115 3hh0_A Transcriptional regulat 22.4 1.3E+02 0.0045 24.1 5.3 46 258-303 85-134 (146)
116 3u59_A Tropomyosin beta chain; 22.4 2.5E+02 0.0086 21.1 9.1 6 182-187 8-13 (101)
117 4eto_A Protein S100-A4; calciu 22.2 51 0.0017 24.2 2.5 32 271-303 54-85 (93)
118 3zwh_A Protein S100-A4; Ca-bin 21.9 66 0.0022 24.3 3.2 34 270-304 56-89 (104)
119 1nlw_A MAD protein, MAX dimeri 21.2 2.3E+02 0.0078 20.5 5.9 8 138-145 18-25 (80)
120 3n22_A Protein S100-A2; EF-han 20.8 56 0.0019 24.3 2.5 33 270-303 54-86 (98)
121 1q90_R Cytochrome B6-F complex 20.8 54 0.0018 22.0 2.1 13 299-311 8-20 (49)
122 3a7o_A Autophagy protein 16; c 20.5 2.5E+02 0.0084 20.3 9.0 60 172-235 14-73 (75)
123 3oja_A Leucine-rich immune mol 20.4 3.8E+02 0.013 25.3 9.1 17 213-229 433-449 (487)
124 1nkp_B MAX protein, MYC proto- 20.3 1.8E+02 0.0061 20.9 5.2 22 213-234 59-80 (83)
125 1t2k_D Cyclic-AMP-dependent tr 20.1 2.1E+02 0.0073 19.4 8.9 39 192-230 20-58 (61)
126 2q07_A Uncharacterized protein 20.0 97 0.0033 28.5 4.4 34 271-305 148-181 (306)
No 1
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=100.00 E-value=2.2e-44 Score=306.47 Aligned_cols=137 Identities=22% Similarity=0.443 Sum_probs=131.2
Q ss_pred HHHHHHHHhcCCCCCCcccCCccchHhHHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec--CCCCCeeEE
Q 047127 6 SIQFIDTALWCTTPFRLSYADPNQKWLIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS--QSTPPIHFT 83 (322)
Q Consensus 6 v~~wL~~vl~~~~~~~~~Y~~~~~~~~v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~--g~~y~iPi~ 83 (322)
..+||.++|++ |.+++.+ .+|+.+++++||+|+|++++|+ |++++||||+|||||. |.+|||||.
T Consensus 8 ~~~~l~~~l~~-------Y~~~d~t---~~dv~~vl~~yp~L~p~~~~y~---G~~~~LL~l~GtIpv~y~g~~y~iPi~ 74 (146)
T 3obq_A 8 SESQLKKMVSK-------YKYRDLT---VRETVNVITLYKDLKPVLDSYG---TGSRELMNLTGTIPVPYRGNTYNIPIC 74 (146)
T ss_dssp CHHHHHHHTTT-------CSSHHHH---HHHHHHHHHHCTTEEEEEEESS---STTCEEEEEEEEEEEECSSCEEEEEEE
T ss_pred CHHHHHHHHhc-------CCCcchh---HHHHHHHHHhCCCCceEeeeee---CChheEEEEEEEeeeeecCccccceEE
Confidence 46899999995 9999987 5999999999999999999998 9999999999999999 999999999
Q ss_pred EeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccccccCCCCCHHHHHHHHHHhhccCCCCCcCC
Q 047127 84 LWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSHDHPLIYYS 157 (322)
Q Consensus 84 Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~~W~~~~s~L~~lv~~l~~~f~~~pPl~~~p 157 (322)
||||++||++||+|||+ ||++|.|+++ ++||++|+|++|||++|++++|||++|+++|+.+|+++||||+||
T Consensus 75 Iwlp~~YP~~pP~vfv~-pt~~m~I~~~-~~Vd~~G~i~lpyL~~W~~~~snL~~ll~~l~~~F~~epPv~sk~ 146 (146)
T 3obq_A 75 LWLLDTYPYNPPICFVK-PTSSMTIKTG-KHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFSRP 146 (146)
T ss_dssp EECCTTTTTSCCEEEEC-CCTTEEECCB-TTBCTTCBBCCHHHHTCCTTTCCHHHHHHHHHHHHHHSCSEEECC
T ss_pred EEeCccCCCCCCEEEEe-CCCCCEECCC-CCCCCCCCEecccccccCCCCCCHHHHHHHHHHHHhhCCCCccCC
Confidence 99999999999999999 9999999876 999999999999999999989999999999999999999999975
No 2
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=100.00 E-value=5.1e-43 Score=302.83 Aligned_cols=141 Identities=23% Similarity=0.398 Sum_probs=131.5
Q ss_pred CchhHHHHHHHHhcCCCCCCcccCCccchHhHHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec--CCC-C
Q 047127 2 APSSSIQFIDTALWCTTPFRLSYADPNQKWLIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS--QST-P 78 (322)
Q Consensus 2 ~p~~v~~wL~~vl~~~~~~~~~Y~~~~~~~~v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~--g~~-y 78 (322)
+||+|++|||+||+| .|.|++.+ ++|+.++|++||+|+|++++|||+||++++||||+||||+. |.+ |
T Consensus 11 ~p~~v~~wl~~vl~p------~Y~~~~~~---~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Y 81 (162)
T 3r3q_A 11 VPEAVVNWLFKVIQP------IYNDGRTT---FHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPH 81 (162)
T ss_dssp CCHHHHHHHHHHHTT------TCTTHHHH---HHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCC
T ss_pred CCHHHHHHHHHhcCc------cccChhHH---HHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccc
Confidence 589999999999998 69998887 59999999999999999999999999999999999999999 777 9
Q ss_pred CeeEEEeecccCCCCCCEEEEecC-CCCCccc----CCCCccCCCCceeccccccccCCCCCHHHHHHHHHHhhccCCC
Q 047127 79 PIHFTLWLHENYPSMAPMAFIVSS-NSMYPIR----QNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSHDHP 152 (322)
Q Consensus 79 ~iPi~Iwlp~~yP~~pP~v~v~~p-t~~m~I~----~~h~~Vd~~G~v~~pyL~~W~~~~s~L~~lv~~l~~~f~~~pP 152 (322)
||||.||||++||++||+|||+ | |.+|.++ ..|++||++|+|++|||++|+++.|+|.+++++|+..|++..|
T Consensus 82 n~pi~IwlP~~YP~~PP~v~v~-p~t~~m~~~~~~I~~hpnVD~~G~I~lpyL~~W~p~~s~L~~ll~~l~~lf~ep~~ 159 (162)
T 3r3q_A 82 SIPVIMWVPSMYPVKPPFISIN-LENFDMNTISSSLPIQEYIDSNGWIALPILHAWDPAAMNLIMVVQELMSLLHEPPQ 159 (162)
T ss_dssp EEEEEEECCTTTTTSCCEEEEC-GGGCCTTTSCTTSTHHHHBCTTSBBCCGGGGSCCGGGCCHHHHHHHHHHTTSCCCC
T ss_pred cccEEEEeCcccCCCCCEEEEE-CCCccccccccccCCCCCCCCCCcEeCcccccCCCCcCcHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999 6 8888743 3479999999999999999998889999999999999998765
No 3
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=99.97 E-value=4e-31 Score=229.54 Aligned_cols=143 Identities=20% Similarity=0.213 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHH---HHHHcCCcccc
Q 047127 172 EALDRFSGMLHYDMGALQARTEEET-EALLTIQVELKNRA-------RKLKETVVELAGKADVLTN---WLKVNGDPKAI 240 (322)
Q Consensus 172 ~l~~~~~~~L~~~l~~~~~~~~~e~-~~L~~~q~~L~~~~-------~~Le~~~~~l~~~~~~L~~---~~~e~~~~~~~ 240 (322)
++++++.++++....+.+...+.++ .+|.+.+.+|..++ +.|+++.+.++.+++.++. ++++..+.
T Consensus 19 ~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~--- 95 (174)
T 2p22_A 19 TVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSST--- 95 (174)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 4555666666655555555666666 56666777766665 4566677777777777777 44444333
Q ss_pred ccccCC-CcccccccCChhHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047127 241 GVILGD-RVEDAFEAIDAESKAELEGSAADEAIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLVKLEVKR 318 (322)
Q Consensus 241 ~~~~~~-dide~v~~~~~l~~QLlel~Aed~AieDtIy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Rali~Ki~~~~ 318 (322)
...+. |+|+++++++|+++|||+++|+|+||+||||+|++||++|+|++|+|+|+||.|||||||+||+++||+..+
T Consensus 96 -~~~~~~diD~~v~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~I~ld~ylK~vR~LaReQF~~ral~~Ki~~~~ 173 (174)
T 2p22_A 96 -SHVDDEDVNSIAVAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQFLVRWHIQRITSPL 173 (174)
T ss_dssp -SCCCSSCGGGTEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -CCCCCCChhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 12334 999999999999999999999999999999999999999999999999999999999999999999998654
No 4
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=99.95 E-value=3.6e-28 Score=177.52 Aligned_cols=63 Identities=30% Similarity=0.409 Sum_probs=61.2
Q ss_pred ChhHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047127 256 DAESKAELEGSAADEAIEDVIYALDKALERGVVSFDSYIRQVRILAREQFFHRDLLVKLEVKR 318 (322)
Q Consensus 256 ~~l~~QLlel~Aed~AieDtIy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Rali~Ki~~~~ 318 (322)
+|+++|||+++|||+|||||||+|++||++|+|++|+|+|+||.||||||++||+++||+..+
T Consensus 2 ~pl~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaReQF~~Rali~Ki~~~~ 64 (65)
T 2f6m_A 2 TDGLNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQQFLVRWHIQRITSPL 64 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 799999999999999999999999999999999999999999999999999999999998754
No 5
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=98.91 E-value=1.5e-08 Score=86.67 Aligned_cols=107 Identities=21% Similarity=0.329 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+++..+.+.-+ ...........|| ..+++.+.|+|... |..|. +.+.|++|.+||+.||.|++. .
T Consensus 9 L~kE~~~l~~~~~-~g~~~~p~~~~~~-~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~-t------ 79 (157)
T 2gjd_A 9 LQEERKKWRKDHP-FGFYAKPVKKADG-SMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFP-A------ 79 (157)
T ss_dssp HHHHHHHHHHCCC-TTCEEEEEECTTS-CEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECC-T------
T ss_pred HHHHHHHHHhCCC-CCEEEEeccccCC-CCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeecc-C------
Confidence 3567766655422 1222222222234 35799999999764 44443 889999999999999999997 3
Q ss_pred cCCCCccCCCCceecccccc---ccCCCCCHHHHHHHHHHhhcc
Q 047127 109 RQNHPFVSPCGTITTPYLQT---WSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 109 ~~~h~~Vd~~G~v~~pyL~~---W~~~~s~L~~lv~~l~~~f~~ 149 (322)
+..||+|+.+|+|++.+|.. |++ ..++..++..+...|..
T Consensus 80 ~i~HPnv~~~G~iCl~iL~~~~~W~p-~~~i~~vl~~i~~ll~~ 122 (157)
T 2gjd_A 80 GFYHPNVYPSGTICLSILNEDQDWRP-AITLKQIVLGVQDLLDS 122 (157)
T ss_dssp TCCCTTBCTTSBBCCGGGCTTTTCCT-TCCHHHHHHHHHHHHTS
T ss_pred CCccCCCCCCCcEeeecccCCCCCCC-CCcHHHHHHHHHHHHhC
Confidence 35699999999999999986 995 79999999999999865
No 6
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=98.89 E-value=2e-08 Score=86.20 Aligned_cols=107 Identities=17% Similarity=0.355 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+|+..+.+.-+ ...........|| ..+++.+.|+|... |..|. +.+.|++|.+||+.||.|++. .
T Consensus 12 L~kE~~~l~~~~~-~g~~~~p~~~~~~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~-t------ 82 (161)
T 2grr_A 12 LAQERKAWRKDHP-FGFVAVPTKNPDG-TMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFE-P------ 82 (161)
T ss_dssp HHHHHHHHHHSCC-TTCEEEEEECTTS-CEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES-S------
T ss_pred HHHHHHHHHhCCC-CCEEEEeccccCC-CCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEe-c------
Confidence 4577777665433 1111111222233 35899999999754 33333 788999999999999999997 3
Q ss_pred cCCCCccCCCCceecccccc---ccCCCCCHHHHHHHHHHhhcc
Q 047127 109 RQNHPFVSPCGTITTPYLQT---WSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 109 ~~~h~~Vd~~G~v~~pyL~~---W~~~~s~L~~lv~~l~~~f~~ 149 (322)
+..||+|+.+|.|++.+|.. |++ ..++..++..+...|..
T Consensus 83 ~i~HPnv~~~G~iCl~iL~~~~~W~p-~~~i~~vl~~i~~ll~~ 125 (161)
T 2grr_A 83 PLFHPNVYPSGTVCLSILEEDKDWRP-AITIKQILLGIQELLNE 125 (161)
T ss_dssp CCCSTTBCTTSBBCCGGGCTTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred CcccCCCCCCCeEeehhcCCCCCcCC-CCcHHHHHHHHHHHHhC
Confidence 25699999999999999985 995 78999999999999875
No 7
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=98.85 E-value=1.6e-08 Score=86.06 Aligned_cols=102 Identities=21% Similarity=0.360 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+|+..+.+.-+. ...+...+ .+++.+.|+|... |..|. +.+.|++|.+||+.||.|.+. .
T Consensus 9 L~~E~~~l~~~~~~---~i~~~~~~----~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~-t------ 74 (152)
T 2aak_A 9 LMRDFKRLQQDPPA---GISGAPQD----NNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFV-S------ 74 (152)
T ss_dssp HHHHHHHHHHSCCT---TEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES-S------
T ss_pred HHHHHHHHHhCCCC---CEEEEeCC----CCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEe-c------
Confidence 45777776654321 11122222 2699999999765 44443 899999999999999999996 3
Q ss_pred cCCCCccCCCCceeccccc-cccCCCCCHHHHHHHHHHhhcc
Q 047127 109 RQNHPFVSPCGTITTPYLQ-TWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 109 ~~~h~~Vd~~G~v~~pyL~-~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
+..||+|+.+|+|++.+|. +|++ ..++..++..+...|..
T Consensus 75 ~i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~ 115 (152)
T 2aak_A 75 RMFHPNIYADGSICLDILQNQWSP-IYDVAAILTSIQSLLCD 115 (152)
T ss_dssp CCCCTTBCTTSBBCCGGGTTSCCT-TCCHHHHHHHHHHHHTS
T ss_pred CcccCCCCCCCEEechhhcCCCCC-CCcHHHHHHHHHHHHhC
Confidence 2569999999999999998 6995 78999999999999875
No 8
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=98.76 E-value=4.3e-08 Score=83.63 Aligned_cols=102 Identities=21% Similarity=0.316 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+|+..+.+. +.- ...+.. ++ .+++.+.|+|... |..|. +.+.|.+|.+||+.||.|.+. .
T Consensus 10 L~kE~~~l~~~-~~~--~i~~~~--~~--~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~-t------ 75 (155)
T 1jat_A 10 IIKETEKLVSD-PVP--GITAEP--HD--DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFL-T------ 75 (155)
T ss_dssp HHHHHHHHHHS-CCT--TEEEEE--ET--TEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEEC-S------
T ss_pred HHHHHHHHHhC-CCC--CEEEEE--CC--CchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceee-c------
Confidence 35788777554 211 111222 22 3799999999755 44443 899999999999999999886 3
Q ss_pred cCCCCccCCCCceeccccc-cccCCCCCHHHHHHHHHHhhcc
Q 047127 109 RQNHPFVSPCGTITTPYLQ-TWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 109 ~~~h~~Vd~~G~v~~pyL~-~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
+.-||+|+.+|.|++.+|. +|++ ..++..++..+...|..
T Consensus 76 ~i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~ 116 (155)
T 1jat_A 76 KIYHPNIDRLGRICLDVLKTNWSP-ALQIRTVLLSIQALLAS 116 (155)
T ss_dssp CCCBTTBCTTCCBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred ccccCCCCCCCEEEchhhccCCCC-CCCHHHHHHHHHHHHhC
Confidence 2568999999999999997 8995 88999999999998875
No 9
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=98.75 E-value=5.3e-08 Score=73.29 Aligned_cols=67 Identities=21% Similarity=0.242 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHcCCcc
Q 047127 172 EALDRFSGMLHYDMGALQARTEEETEALLTIQVELKNRARKL-------KETVVELAGKADVLTNWLKVNGDPK 238 (322)
Q Consensus 172 ~l~~~~~~~L~~~l~~~~~~~~~e~~~L~~~q~~L~~~~~~L-------e~~~~~l~~~~~~L~~~~~e~~~~~ 238 (322)
+++++|+++|++++.+.+++.++|+++|.+++++|..|+.+| +++.++++.+++.|++..+++++.+
T Consensus 3 SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999654 5555666778888888888887654
No 10
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=98.75 E-value=4.6e-08 Score=84.38 Aligned_cols=112 Identities=18% Similarity=0.292 Sum_probs=79.1
Q ss_pred ccCCccchHhHHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEE
Q 047127 23 SYADPNQKWLIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAF 98 (322)
Q Consensus 23 ~Y~~~~~~~~v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~ 98 (322)
.+..+-....+.+|+..+.+. +.- ...+.. ++ .+++.+.|+|... |..|. +.+.|.+|.+||+.||.|.
T Consensus 14 ~~~~~~~~~RL~kEl~~l~~~-~~~--gi~~~p--~~--~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~ 86 (165)
T 2c4o_A 14 VPRGSMALKRIHKELNDLARD-PPA--QCSAGP--VG--DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVA 86 (165)
T ss_dssp --CCHHHHHHHHHHHHHHHSS-CCT--TEEEEE--SS--SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE
T ss_pred ccCCcHHHHHHHHHHHHHHhC-CCC--CEEEEE--cC--CCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEE
Confidence 444433333356777776543 211 122222 22 2588889988644 44443 8889999999999999999
Q ss_pred EecCCCCCcccCCCCccCCCCceeccccc-cccCCCCCHHHHHHHHHHhhcc
Q 047127 99 IVSSNSMYPIRQNHPFVSPCGTITTPYLQ-TWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 99 v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~-~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
+. . +..||+|+.+|+|++..|. +|++ ..++..++..+...|..
T Consensus 87 F~-T------~i~HPnV~~~G~ICl~iL~~~W~P-~~ti~~vL~si~~ll~~ 130 (165)
T 2c4o_A 87 FT-T------RIYHPNINSNGSICLDILRSQWSP-ALTISKVLLSICSLLCD 130 (165)
T ss_dssp EC-S------CCCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred Ee-c------CCcCCcCCCCCeEeehhhcCCCCC-cCcHHHHHHHHHHHHhC
Confidence 86 3 2468999999999999997 8996 79999999999999875
No 11
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=98.72 E-value=6.8e-08 Score=83.68 Aligned_cols=102 Identities=18% Similarity=0.317 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+++..+.+.-+ +...+... ..+++.+.|+|... |..|. +.+.|.||.+||+.||.|.+. .
T Consensus 9 L~kEl~~l~~~~~---~gi~~~p~----~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~-t------ 74 (169)
T 1ayz_A 9 LMRDFKRMKEDAP---PGVSASPL----PDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFL-S------ 74 (169)
T ss_dssp HHHHHHHHHHSCC---TTEEEEEE----TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES-S------
T ss_pred HHHHHHHHHhCCC---CCEEEEec----CCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccc-c------
Confidence 3567777655422 11222222 22699999999654 44443 889999999999999999996 3
Q ss_pred cCCCCccCCCCceeccccc-cccCCCCCHHHHHHHHHHhhcc
Q 047127 109 RQNHPFVSPCGTITTPYLQ-TWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 109 ~~~h~~Vd~~G~v~~pyL~-~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
+..||+|+.+|+|++..|. +|++ ..++..++..+...|..
T Consensus 75 ~i~HPNI~~~G~ICl~iL~~~WsP-~~~i~~vL~si~~ll~~ 115 (169)
T 1ayz_A 75 EMFHPNVYANGEICLDILQNRWTP-TYDVASILTSIQSLFND 115 (169)
T ss_dssp CCCCTTBCTTSBBCCGGGTTTCCT-TCCHHHHHHHHHHHHTC
T ss_pred CCccCCCCCCCeEeehhhccCCCC-cCcHHHHHHHHHHHHhC
Confidence 2569999999999999998 6985 88999999999999864
No 12
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=98.72 E-value=8.7e-08 Score=81.81 Aligned_cols=102 Identities=24% Similarity=0.407 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+|+..+.+.-+ . ...++. ++ .+++.+.|+|... |..|. +.+.|.+|.+||+.||.|.+. .
T Consensus 14 L~kEl~~l~~~~~-~--~i~~~p--~~--~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~-t------ 79 (156)
T 2e2c_A 14 LQQELRTLLMSGD-P--GITAFP--DG--DNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFT-T------ 79 (156)
T ss_dssp HHHHHHHHHHHCC-T--TEEEEE--SS--SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES-S------
T ss_pred HHHHHHHHHhCCC-C--CEEEEE--CC--CCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEe-C------
Confidence 4678887765422 1 122222 22 2688899998644 43332 889999999999999999996 3
Q ss_pred cCCCCccCCCCceeccccc-cccCCCCCHHHHHHHHHHhhcc
Q 047127 109 RQNHPFVSPCGTITTPYLQ-TWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 109 ~~~h~~Vd~~G~v~~pyL~-~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
+..||+|+.+|.|++..|. +|++ ..++..++..+...|..
T Consensus 80 ~i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vL~si~~ll~~ 120 (156)
T 2e2c_A 80 PCWHPNVDQSGNICLDILKENWTA-SYDVRTILLSLQSLLGE 120 (156)
T ss_dssp CCCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHTTS
T ss_pred CcccCCCccCceEECccccccCCC-CCcHHHHHHHHHHHHhC
Confidence 2469999999999999997 6985 79999999999998865
No 13
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=98.72 E-value=6.4e-08 Score=82.06 Aligned_cols=102 Identities=21% Similarity=0.362 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+|+..+.+.-+ -.. .+.. ++ .+++.+.|+|.-. |..|. +.+.|.+|.+||+.||.|.+. .
T Consensus 9 L~kEl~~l~~~~~-~~~--~~~~--~~--~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~-t------ 74 (150)
T 1z2u_A 9 IQKELQDLGRDPP-AQC--SAGP--VG--DDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFT-T------ 74 (150)
T ss_dssp HHHHHHHHHHSCC-SSE--EEEE--ET--TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES-S------
T ss_pred HHHHHHHHHhCCC-CCE--EEEE--CC--CcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEe-c------
Confidence 3577777655322 111 1121 22 3699999999744 44443 888999999999999999986 3
Q ss_pred cCCCCccCCCCceeccccc-cccCCCCCHHHHHHHHHHhhcc
Q 047127 109 RQNHPFVSPCGTITTPYLQ-TWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 109 ~~~h~~Vd~~G~v~~pyL~-~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
+..||+|+.+|+|++..|. +|++ ..++..++..+...|..
T Consensus 75 ~i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~ 115 (150)
T 1z2u_A 75 RIYHPNINSNGSICLDILRSQWSP-ALTISKVLLSICSLLCD 115 (150)
T ss_dssp CCCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred CcccCcCCCCCeEeeccccCCCCC-CCCHHHHHHHHHHHhhC
Confidence 2468999999999999997 8996 79999999999999875
No 14
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=98.70 E-value=6.8e-08 Score=82.89 Aligned_cols=79 Identities=16% Similarity=0.284 Sum_probs=65.7
Q ss_pred eEEEEEEeeeecCCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccc-cccCCCCCHHH
Q 047127 63 NLFKVSGCFHVSQSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQ-TWSYPGYNLND 138 (322)
Q Consensus 63 ~Ll~l~Gtipv~g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~-~W~~~~s~L~~ 138 (322)
+|..+.++|.-.|..|. +.+.|.+|.+||+.||.|.+. . +..||+|+.+|.|++..|. +|++ ..++..
T Consensus 33 ~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~-t------~i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~ 104 (160)
T 1y8x_A 33 DLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE-T------MVYHPNIDLEGNVCLNILREDWKP-VLTINS 104 (160)
T ss_dssp CTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTSCCEEEEC-S------CCCBTTBCTTCBBCCGGGTTTCCT-TCCHHH
T ss_pred ccceEEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEe-c------CCccCcCCCCCeEEcccchhhccC-CCCHHH
Confidence 57888888832244443 889999999999999999997 3 2569999999999999995 7986 789999
Q ss_pred HHHHHHHhhcc
Q 047127 139 LVHNLVQIFSH 149 (322)
Q Consensus 139 lv~~l~~~f~~ 149 (322)
++..+...|..
T Consensus 105 vL~~i~~ll~~ 115 (160)
T 1y8x_A 105 IIYGLQYLFLE 115 (160)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhC
Confidence 99999998876
No 15
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=98.69 E-value=3.6e-08 Score=84.07 Aligned_cols=102 Identities=19% Similarity=0.303 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+|+..+.+.-+ +...+. ..++ .+++.+.|+|. . |..|. +.+.|.+|.+||+.||.|.+. .
T Consensus 9 L~kEl~~l~~~~~---~~i~~~-~~~~--~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~-t------ 74 (155)
T 1wzv_A 9 VVKELEDLQKKPP---PYLRNL-SSDD--ANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFT-T------ 74 (155)
T ss_dssp HHHHHHHHHHSCC---TTEEEE-EECS--SCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEES-S------
T ss_pred HHHHHHHHHhCCC---CCEEEE-ecCC--CchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceee-C------
Confidence 4577777655433 112120 1222 26889999998 6 55553 899999999999999999997 3
Q ss_pred cCCCCccCCCCceecccc--ccccCCCCCHHHHHHHHHHhhcc
Q 047127 109 RQNHPFVSPCGTITTPYL--QTWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 109 ~~~h~~Vd~~G~v~~pyL--~~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
+..||+|+.+|.|++..| .+|++ ..++..++..+...|.+
T Consensus 75 ~i~HPnV~~~G~iCl~iL~~~~W~p-~~~i~~vl~~i~~ll~~ 116 (155)
T 1wzv_A 75 KIYHPNVDENGQICLPIISSENWKP-CTKTCQVLEALNVLVNR 116 (155)
T ss_dssp CCCBTTBCTTCBCCCGGGCTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred CCccCcCCCCCeEeecCCCccCCCC-CCcHHHHHHHHHHHHhC
Confidence 246999999999999999 68995 78999999999999875
No 16
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=98.69 E-value=1.1e-07 Score=80.92 Aligned_cols=102 Identities=23% Similarity=0.310 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+|+..+.+. +.-. ..+...+| +++.+.|+|... |..|. +.+.|.+|.+||+.||.|.+. .
T Consensus 10 L~kEl~~l~~~-~~~~--i~~~~~~~----~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~-t------ 75 (154)
T 2c2v_B 10 IIKETQRLLAE-PVPG--IKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFM-T------ 75 (154)
T ss_dssp HHHHHHHHHHS-CCTT--EEEEECSS----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEEC-S------
T ss_pred HHHHHHHHHhC-CCCC--EEEEECCC----chheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEee-c------
Confidence 45788776654 2211 22222222 688899999654 44443 889999999999999999986 3
Q ss_pred cCCCCccCCCCceecccc-ccccCCCCCHHHHHHHHHHhhcc
Q 047127 109 RQNHPFVSPCGTITTPYL-QTWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 109 ~~~h~~Vd~~G~v~~pyL-~~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
+..||+|+.+|+|++..| .+|++ ..++..++..+...|..
T Consensus 76 ~i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~ 116 (154)
T 2c2v_B 76 KIYHPNVDKLGRICLDILKDKWSP-ALQIRTVLLSIQALLSA 116 (154)
T ss_dssp CCCCTTBCTTCBBCCHHHHTSCCT-TCCHHHHHHHHHHHTTS
T ss_pred CcccCcCccCCeEEchhccCCCCC-CCcHHHHHHHHHHHHhC
Confidence 246999999999999999 68996 89999999999998865
No 17
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=98.69 E-value=2.7e-07 Score=79.46 Aligned_cols=107 Identities=17% Similarity=0.351 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+++..+-+.-| -.........+|| ..+|+.+.|+|... |+.|. +-+.|.+|.+||+.||.|.+. .
T Consensus 15 L~kEl~~l~~~~p-~gi~~~p~~~~d~-~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~-t------ 85 (163)
T 3rcz_B 15 LQEERKQWRRDHP-FGFYAKPCKSSDG-GLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFT-P------ 85 (163)
T ss_dssp HHHHHHHHHHSCC-TTCEEEEEECTTS-SEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES-S------
T ss_pred HHHHHHHHHhCCC-CCEEEEEccCcCC-CCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEe-C------
Confidence 3577777765433 1222222222355 45899999999765 55554 889999999999999999986 3
Q ss_pred cCCCCccCCCCceecccccc---ccCCCCCHHHHHHHHHHhhcc
Q 047127 109 RQNHPFVSPCGTITTPYLQT---WSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 109 ~~~h~~Vd~~G~v~~pyL~~---W~~~~s~L~~lv~~l~~~f~~ 149 (322)
+..||+|+.+|+|++..|.. |++ ..++..++..+...|..
T Consensus 86 ~i~HPnV~~~G~iCl~iL~~~~~W~p-~~ti~~vL~~i~~ll~~ 128 (163)
T 3rcz_B 86 PLFHPNVYPSGTVCLSILNEEEGWKP-AITIKQILLGIQDLLDD 128 (163)
T ss_dssp CCCSTTBCTTSBBCCGGGCTTTTCCT-TCCHHHHHHHHHHHHTS
T ss_pred CCccCCCCCCCcEeccccCCCCCcCC-cCcHHHHHHHHHHHHhC
Confidence 25699999999999999974 996 78999999999999854
No 18
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=98.68 E-value=9.4e-08 Score=79.97 Aligned_cols=104 Identities=17% Similarity=0.301 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhCC-CCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCc
Q 047127 33 IRKQLLSLLQNYP-SFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYP 107 (322)
Q Consensus 33 v~~dv~~~l~~y~-~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~ 107 (322)
+.+|+..+.+.-+ ++... ...+ ..++..+.++|... |..|. +.+.|.+|.+||+.||.|.+. ..
T Consensus 27 L~kEl~~l~~~~~~gi~v~----~~~~--~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~-T~---- 95 (136)
T 2a7l_A 27 LQKELLALQNDPPPGMTLN----EKSV--QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFT-GE---- 95 (136)
T ss_dssp HHHHHHHHHHSCCTTCCCC----TTCC--CCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEE-SS----
T ss_pred HHHHHHHHHhCCCCCEEEE----EeeC--ccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEe-CC----
Confidence 4688887765422 22210 0112 22688999998755 54443 889999999999999999887 31
Q ss_pred ccCCCCccCCCCceeccccc-cccCCCCCHHHHHHHHHHhhc
Q 047127 108 IRQNHPFVSPCGTITTPYLQ-TWSYPGYNLNDLVHNLVQIFS 148 (322)
Q Consensus 108 I~~~h~~Vd~~G~v~~pyL~-~W~~~~s~L~~lv~~l~~~f~ 148 (322)
|-+-||+|+.+|+|++..|. +|++ ..++..++..++..++
T Consensus 96 i~~~HPNV~~~G~ICL~iL~~~WsP-~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 96 NIPVHPHVYSNGHICLSILTEDWSP-ALSVQSVCLSIISMLS 136 (136)
T ss_dssp CCCCBTTBCTTCBBCCGGGTTTCCT-TSCHHHHHHHHHHHTC
T ss_pred CcCCCccCCCCCeEEchhcCCCCCC-CCcHHHHHHHHHHHhC
Confidence 22348999999999999994 8996 7899999988887653
No 19
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=98.67 E-value=2.1e-07 Score=81.38 Aligned_cols=102 Identities=22% Similarity=0.381 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+|+..+...-+ . .. +...++. +++.+.|+|... |..|. +-+.|.||.+||+.||.|.+. .
T Consensus 35 L~kEl~~l~~~~~-~--gi--~~~p~~~--nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~-T------ 100 (179)
T 1i7k_A 35 LQQELMTLMMSGD-K--GI--SAFPESD--NLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFL-T------ 100 (179)
T ss_dssp HHHHHHHHHHHCC-T--TE--EEEEETT--EEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEES-S------
T ss_pred HHHHHHHHHhCCC-C--CE--EEEEcCC--cccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEe-c------
Confidence 5678877766422 1 11 2222222 799999999765 44443 889999999999999999996 3
Q ss_pred cCCCCccCCCCceeccccc-cccCCCCCHHHHHHHHHHhhcc
Q 047127 109 RQNHPFVSPCGTITTPYLQ-TWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 109 ~~~h~~Vd~~G~v~~pyL~-~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
+..||+|+.+|+|++..|. +|++ ..++..++..+...|.+
T Consensus 101 ~i~HPNV~~~G~ICL~iL~~~WsP-~~ti~~vL~sI~sll~~ 141 (179)
T 1i7k_A 101 PCYHPNVDTQGNISLDILKEKWSA-LYDVRTILLSIQSLLGE 141 (179)
T ss_dssp CCCSTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred CCccCccccCCeEEcccCcCcCCC-CCCHHHHHHHHHHHHhC
Confidence 2469999999999999997 6985 78999999999998864
No 20
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=98.67 E-value=1.2e-07 Score=80.22 Aligned_cols=79 Identities=19% Similarity=0.343 Sum_probs=67.2
Q ss_pred eEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccc-cccCCCCCHH
Q 047127 63 NLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQ-TWSYPGYNLN 137 (322)
Q Consensus 63 ~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~-~W~~~~s~L~ 137 (322)
++..+.|+|... |..|. +.+.|.+|.+||+.||.|.+. . +..||+|+.+|+|++..|. +|++ ..++.
T Consensus 29 ~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~-t------~i~HPnv~~~G~iCl~iL~~~W~p-~~~i~ 100 (149)
T 2r0j_A 29 NYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFL-T------KIYHPNIDKLGRICLDILKDKWSP-ALQIR 100 (149)
T ss_dssp EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEEC-S------CCCBTTBCTTCBBCCGGGTTTCCT-TSCHH
T ss_pred cccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEec-c------CCccCCCCCCCEEechhcCCCCCC-CCcHH
Confidence 699999999654 44442 889999999999999999986 3 2469999999999999997 8995 78999
Q ss_pred HHHHHHHHhhcc
Q 047127 138 DLVHNLVQIFSH 149 (322)
Q Consensus 138 ~lv~~l~~~f~~ 149 (322)
.++..+...|..
T Consensus 101 ~vl~~i~~ll~~ 112 (149)
T 2r0j_A 101 TVLLSIQALLSS 112 (149)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhC
Confidence 999999998865
No 21
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=98.66 E-value=8.1e-08 Score=81.78 Aligned_cols=78 Identities=15% Similarity=0.373 Sum_probs=65.9
Q ss_pred eEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccc--cccCCCCCH
Q 047127 63 NLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQ--TWSYPGYNL 136 (322)
Q Consensus 63 ~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~--~W~~~~s~L 136 (322)
+++.+.|+|. . |..|. +.+.|.+|.+||+.||.|.+. . +..||+|+.+|.|++..|. +|++ ..++
T Consensus 31 ~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~-t------~i~HPnv~~~G~iCl~iL~~~~W~p-~~~i 101 (154)
T 1c4z_D 31 NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFK-T------KIYHPNIDEKGQVCLPVISAENWKP-ATKT 101 (154)
T ss_dssp SSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEES-S------CCCCTTBCTTCBBCCTTTSSSSCCT-TCCH
T ss_pred chheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEe-C------CCccccCCCCCEEECCCCCCCCCCC-CCcH
Confidence 6888999996 4 44332 889999999999999999997 3 2469999999999999995 8996 7899
Q ss_pred HHHHHHHHHhhcc
Q 047127 137 NDLVHNLVQIFSH 149 (322)
Q Consensus 137 ~~lv~~l~~~f~~ 149 (322)
..++..+...|.+
T Consensus 102 ~~vl~~i~~ll~~ 114 (154)
T 1c4z_D 102 DQVIQSLIALVND 114 (154)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcC
Confidence 9999999998865
No 22
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=98.65 E-value=8.7e-08 Score=83.83 Aligned_cols=79 Identities=16% Similarity=0.288 Sum_probs=65.0
Q ss_pred eEEEEEEeeeecCCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccc-cccCCCCCHHH
Q 047127 63 NLFKVSGCFHVSQSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQ-TWSYPGYNLND 138 (322)
Q Consensus 63 ~Ll~l~Gtipv~g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~-~W~~~~s~L~~ 138 (322)
++..+.++|.-.|..|. +.+.|.+|.+||+.||.|.+. . +..||+||.+|.|++..|. +|++ ..++..
T Consensus 53 nl~~W~~~igP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~-t------~i~HPNV~~~G~iCl~iL~~~W~p-~~~i~~ 124 (180)
T 2nvu_C 53 DLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE-T------MVYHPNIDLEGNVALNILREDWKP-VLTINS 124 (180)
T ss_dssp CTTEEEEEECCCSGGGTTBCEEEEEECCTTTTTSCCEEEEC-S------CCCBTTBCTTSBBCCGGGTTSCCT-TCCHHH
T ss_pred cccceEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCcCcee-c------cCccCCCCCCCcEEcccccccCCC-CCCHHH
Confidence 57888888832233332 888999999999999999997 3 2469999999999999995 7986 789999
Q ss_pred HHHHHHHhhcc
Q 047127 139 LVHNLVQIFSH 149 (322)
Q Consensus 139 lv~~l~~~f~~ 149 (322)
++..+...|..
T Consensus 125 vL~si~~ll~~ 135 (180)
T 2nvu_C 125 IIYGLQYLFLE 135 (180)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhC
Confidence 99999998875
No 23
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=98.62 E-value=2.7e-07 Score=79.67 Aligned_cols=103 Identities=18% Similarity=0.349 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCc
Q 047127 32 LIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYP 107 (322)
Q Consensus 32 ~v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~ 107 (322)
.+.+|+..+.+. +.-. ..+.. ++ .++..+.|+|.-. |..|. +.+.|.+|.+||+.||.|.+. .
T Consensus 25 RL~kEl~~l~~~-~~~g--i~~~~--~~--~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~-T----- 91 (166)
T 2ayv_A 25 RINKELNDLSKD-PPTN--CSAGP--VG--DDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFT-T----- 91 (166)
T ss_dssp HHHHHHHHHHHS-CCTT--EEEEE--CS--SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEEC-S-----
T ss_pred HHHHHHHHHHhC-CCCC--EEEEE--cC--CCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeec-c-----
Confidence 356788777554 2111 11222 22 2588889998744 44443 889999999999999999986 3
Q ss_pred ccCCCCccCCCCceeccccc-cccCCCCCHHHHHHHHHHhhcc
Q 047127 108 IRQNHPFVSPCGTITTPYLQ-TWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 108 I~~~h~~Vd~~G~v~~pyL~-~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
+..||+|+.+|.|++..|. +|++ ..++..++..+...|..
T Consensus 92 -~i~HPNI~~~G~ICL~iL~~~WsP-~~ti~~vL~sI~sll~~ 132 (166)
T 2ayv_A 92 -KIYHPNINSQGAICLDILKDQWSP-ALTISKVLLSISSLLTD 132 (166)
T ss_dssp -CCCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred -CCcCCcCCCCCeEEcccccccCCC-CCcHHHHHHHHHHHHhC
Confidence 2468999999999999998 7996 78999999999998865
No 24
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=98.61 E-value=7.6e-08 Score=82.36 Aligned_cols=102 Identities=17% Similarity=0.358 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+|+..+.+.-+ +...+.. ++ .++..+.|+|... |..|. +.+.|.+|.+||+.||.|.+. .
T Consensus 18 L~kEl~~l~~~~~---~gi~~~~--~~--~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~-t------ 83 (158)
T 1zdn_A 18 VYKEVTTLTADPP---DGIKVFP--NE--EDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFL-T------ 83 (158)
T ss_dssp HHHHHHHHHHSCC---TTEEEEE--CS--SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES-S------
T ss_pred HHHHHHHHHhCCC---CCEEEEE--CC--CChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEec-c------
Confidence 4577777655322 1122222 22 2588899998655 44443 889999999999999999996 3
Q ss_pred cCCCCccCCCCceeccccc-cccCCCCCHHHHHHHHHHhhcc
Q 047127 109 RQNHPFVSPCGTITTPYLQ-TWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 109 ~~~h~~Vd~~G~v~~pyL~-~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
+..||+|+.+|+|++..|. +|++ ..++..++..+...|..
T Consensus 84 ~i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vL~~i~~ll~~ 124 (158)
T 1zdn_A 84 KIFHPNVGANGEICVNVLKRDWTA-ELGIRHVLLTIKCLLIH 124 (158)
T ss_dssp CCCCTTBCTTSBBCHHHHTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred CcccCCCCCCCEEehhhcCCCCCC-CCcHHHHHHHHHHHHhC
Confidence 2469999999999999996 8996 79999999999998865
No 25
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=98.61 E-value=1.3e-07 Score=81.02 Aligned_cols=80 Identities=19% Similarity=0.365 Sum_probs=66.3
Q ss_pred eEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCC-CCceecccccc-ccCCCCCH
Q 047127 63 NLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSP-CGTITTPYLQT-WSYPGYNL 136 (322)
Q Consensus 63 ~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~-~G~v~~pyL~~-W~~~~s~L 136 (322)
+++.+.|+|... |..|. +.+.|.+|.+||+.||.|.+. . +..||+|+. +|.|++.+|.+ |++ ..++
T Consensus 39 ~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~-t------~i~HPni~~~~G~iCl~iL~~~W~p-~~~i 110 (159)
T 2bep_A 39 NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI-T------KIWHPNISSVTGAICLDILKDQWAA-AMTL 110 (159)
T ss_dssp SSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES-S------CCCBTTBCTTTCBBCCGGGTTTCCT-TCCH
T ss_pred chheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEee-C------CCCccCCCCCCCEEeChhhhccCCC-CCcH
Confidence 588899999644 33332 889999999999999999997 3 246899995 89999999985 995 8999
Q ss_pred HHHHHHHHHhhccC
Q 047127 137 NDLVHNLVQIFSHD 150 (322)
Q Consensus 137 ~~lv~~l~~~f~~~ 150 (322)
..++..+...|...
T Consensus 111 ~~vl~~i~~ll~~p 124 (159)
T 2bep_A 111 RTVLLSLQALLAAA 124 (159)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999998753
No 26
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=98.59 E-value=1.4e-07 Score=80.08 Aligned_cols=79 Identities=18% Similarity=0.382 Sum_probs=66.6
Q ss_pred eEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceecccc-ccccCCCCCHH
Q 047127 63 NLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYL-QTWSYPGYNLN 137 (322)
Q Consensus 63 ~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL-~~W~~~~s~L~ 137 (322)
+++.+.|+|... |..|. +-+.|.+|.+||+.||.|.+. . +..||+|+.+|+|++..| .+|++ ..++.
T Consensus 32 nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~-t------~i~HPnv~~~G~iCl~iL~~~W~p-~~~i~ 103 (151)
T 4gpr_A 32 DIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFM-T------KVYHPNINKNGVICLDILKDQWSP-ALTLS 103 (151)
T ss_dssp CTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEES-S------CCCBTTBCTTCBBCCGGGTTTCCT-TCCHH
T ss_pred CceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEe-c------CcccceECCCCEEEcccccCCCCC-CCcHH
Confidence 688899998744 44443 889999999999999999886 3 246899999999999999 58985 78999
Q ss_pred HHHHHHHHhhcc
Q 047127 138 DLVHNLVQIFSH 149 (322)
Q Consensus 138 ~lv~~l~~~f~~ 149 (322)
.++..+...|..
T Consensus 104 ~vl~~i~~ll~~ 115 (151)
T 4gpr_A 104 RVLLSISSLLTD 115 (151)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 999999998875
No 27
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=98.58 E-value=1e-07 Score=80.67 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=67.0
Q ss_pred eEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCC-CCceeccccc-cccCCCCCH
Q 047127 63 NLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSP-CGTITTPYLQ-TWSYPGYNL 136 (322)
Q Consensus 63 ~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~-~G~v~~pyL~-~W~~~~s~L 136 (322)
++..+.|+|... |..|. +.+.|.+|.+||+.||.|.+. . +..||+|+. +|.|++..|. +|++ ..++
T Consensus 30 ~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~-t------~i~HPni~~~~G~iCl~iL~~~W~p-~~~i 101 (149)
T 1fxt_A 30 DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFD-T------KVYHPNISSVTGAICLDILKNAWSP-VITL 101 (149)
T ss_dssp CSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEES-S------CCCBTTBCSSSCCBCCHHHHTSCCT-TCCH
T ss_pred CceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEe-C------CCccCCCcCCCCeEeCCcCCCCCCC-CCcH
Confidence 588899998654 44443 889999999999999999996 3 256999998 9999999997 6985 7899
Q ss_pred HHHHHHHHHhhccC
Q 047127 137 NDLVHNLVQIFSHD 150 (322)
Q Consensus 137 ~~lv~~l~~~f~~~ 150 (322)
..++..+...|...
T Consensus 102 ~~vl~~i~~ll~~p 115 (149)
T 1fxt_A 102 KSALISLQALLQSP 115 (149)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999998753
No 28
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=98.58 E-value=1.6e-07 Score=77.30 Aligned_cols=103 Identities=19% Similarity=0.325 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+|+..+.+.-+ -. ..+...+ .++..+.++|... |..|. +-+.|.+|.+||+.||.|.+. .. |
T Consensus 11 L~kEl~~l~~~~~-~~--~~~~~~~----~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~-t~----i 78 (125)
T 2fo3_A 11 IQKELHNFLNNPP-IN--CTLDVHP----NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFL-QK----P 78 (125)
T ss_dssp HHHHHHHHHHSCC-TT--EEEEECT----TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEEC-SS----C
T ss_pred HHHHHHHHHhCCC-CC--EEEEeCc----chhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEe-CC----C
Confidence 4678877755422 11 1112222 2588888988644 44442 889999999999999999986 21 1
Q ss_pred cCCCCccCCCCceecccc-ccccCCCCCHHHHHHHHHHhhcc
Q 047127 109 RQNHPFVSPCGTITTPYL-QTWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 109 ~~~h~~Vd~~G~v~~pyL-~~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
..||+|+.+|+|++..| ++|++ ..++..++..+...+..
T Consensus 79 -~~HPnv~~~G~iCl~iL~~~W~P-~~~i~~vl~si~~ll~~ 118 (125)
T 2fo3_A 79 -PKHTHVYSNGDICLSLLGDDYNP-SLSISGLVLSIISMLSS 118 (125)
T ss_dssp -CCBTTBCTTSBBCCGGGTTTCCT-TCCHHHHHHHHHHHHC-
T ss_pred -CCCCcCCCCCEEEchhcCCCCCC-CCcHHHHHHHHHHHHhC
Confidence 37999999999999999 48985 78999999999888764
No 29
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=98.57 E-value=2e-07 Score=80.11 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+|+..+...-+ - ...+...++ .+++.+.|+|... |..|. +.+.|.+|.+||+.||.|.+. ..
T Consensus 8 L~kEl~~l~~~~~-~--gi~~~~~~~---~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~-t~----- 75 (164)
T 3h8k_A 8 LMAEYKQLTLNPP-E--GIVAGPMNE---ENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFT-CE----- 75 (164)
T ss_dssp HHHHHHHHHHSCC-T--TEEEEESST---TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEEC-SC-----
T ss_pred HHHHHHHHHhCCC-C--CEEEEECCC---CCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEc-CC-----
Confidence 3577777665422 1 111222222 1588889998754 44443 889999999999999999986 32
Q ss_pred cCCCCccCCCCceecccc--------------ccccCCCCCHHHHHHHHHHhhcc
Q 047127 109 RQNHPFVSPCGTITTPYL--------------QTWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 109 ~~~h~~Vd~~G~v~~pyL--------------~~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
.-||+|+.+|+|++..| .+|++ ..++..++..+...|..
T Consensus 76 -i~HPNV~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p-~~ti~~vL~~i~~ll~~ 128 (164)
T 3h8k_A 76 -MFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP-VQSVEKILLSVVSMLAE 128 (164)
T ss_dssp -CCCTTBCTTSBBCCGGGSCSCSCCCSCCTTCCCCCT-TCCHHHHHHHHHHHHHS
T ss_pred -CccCCCCCCCcEeeecccCcccccccccccccCCCC-CCcHHHHHHHHHHHHcC
Confidence 56899999999999999 57985 78999999999998875
No 30
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=98.57 E-value=1.5e-07 Score=83.20 Aligned_cols=80 Identities=15% Similarity=0.286 Sum_probs=67.3
Q ss_pred eEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccc-cccCCCCCHH
Q 047127 63 NLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQ-TWSYPGYNLN 137 (322)
Q Consensus 63 ~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~-~W~~~~s~L~ 137 (322)
+++.+.|+|... |..|. +.+.|.||.+||+.||.|.+. . +..||+|+.+|.|++.+|. +|.+ ..++.
T Consensus 76 nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~-T------~i~HPNV~~~G~ICL~iL~~~WsP-~~ti~ 147 (194)
T 3bzh_A 76 NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFR-T------RIYHCNINSQGVICLDILKDNWSP-ALTIS 147 (194)
T ss_dssp CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES-S------CCCBTTBCTTCBBCCGGGTTTCCT-TCCHH
T ss_pred ccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCcccccc-C------CCccceECCCCceechhhhccCCC-cCcHH
Confidence 688899999654 44443 899999999999999999996 3 2469999999999999997 7985 78999
Q ss_pred HHHHHHHHhhccC
Q 047127 138 DLVHNLVQIFSHD 150 (322)
Q Consensus 138 ~lv~~l~~~f~~~ 150 (322)
.++..+...|...
T Consensus 148 ~vL~sI~~ll~~p 160 (194)
T 3bzh_A 148 KVLLSICSLLTDC 160 (194)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCC
Confidence 9999999988653
No 31
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=98.57 E-value=3e-07 Score=78.64 Aligned_cols=106 Identities=16% Similarity=0.238 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+|+..+.+.-+. +...+... ++...+++.+.|+|... |..|. +-+.|.+|.+||+.||.|.+. .
T Consensus 26 L~kEl~~l~~~~~~--~~i~~~~~-~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~-t------ 95 (156)
T 2q0v_A 26 LLDELERGQKGNVS--EGVSFGLE-SADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFD-T------ 95 (156)
T ss_dssp HHHHHHHHHCC-CC--TTEEEEES-STTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES-B------
T ss_pred HHHHHHHHHhCCCC--CCeEEEEC-CCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEE-c------
Confidence 45777766543221 11111221 22223588899998654 44442 889999999999999999886 3
Q ss_pred cCCCCccCCCCce---eccccccccCCCCCHHHHHHHHHHhhcc
Q 047127 109 RQNHPFVSPCGTI---TTPYLQTWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 109 ~~~h~~Vd~~G~v---~~pyL~~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
+..||+|+.+|+| ++..|.+|++ ..++..++..+...|..
T Consensus 96 ~i~HPNV~~~G~icisCL~iL~~WsP-~~ti~~vL~sI~~ll~~ 138 (156)
T 2q0v_A 96 KIEMSCVDNCGRVIKNNLHILKNWNR-NYTIETILISLRQEMLS 138 (156)
T ss_dssp CCCCTTBCTTSBBCGGGSHHHHTCCT-TCCHHHHHHHHHHHTTS
T ss_pred ccccCCCccCCeEehhhcccccCCCC-cCcHHHHHHHHHHHHhC
Confidence 2468999999999 8899999996 78999999999998875
No 32
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=98.57 E-value=2.9e-07 Score=81.13 Aligned_cols=79 Identities=22% Similarity=0.365 Sum_probs=65.6
Q ss_pred eEE---EEEEeeeecCCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccc-cccCCCCC
Q 047127 63 NLF---KVSGCFHVSQSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQ-TWSYPGYN 135 (322)
Q Consensus 63 ~Ll---~l~Gtipv~g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~-~W~~~~s~ 135 (322)
+++ .+.|+|.-.+..|. +.+.|.+|.+||+.||.|.+. . +..||+|+.+|.|++..|. +|++ ..+
T Consensus 59 nl~~~~~w~~~I~p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~-t------~i~HPnV~~~G~iCl~iL~~~W~p-~~~ 130 (190)
T 3o2u_A 59 DRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCL-K------KIFHPNIDLKGNVCLNILREDWSP-ALD 130 (190)
T ss_dssp CTTSCCEEEEEECCSSSTTTTCCEEEEEECCTTTTTSCCEEEEC-S------CCCCTTBCTTSBBCCGGGTTTCCT-TCC
T ss_pred cCCcCCeEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCceeEEe-c------CcccCCCCCCCeEechhccCCCCC-CCC
Confidence 677 88999863343333 789999999999999999886 2 2469999999999999994 8985 899
Q ss_pred HHHHHHHHHHhhcc
Q 047127 136 LNDLVHNLVQIFSH 149 (322)
Q Consensus 136 L~~lv~~l~~~f~~ 149 (322)
+..++..+...|..
T Consensus 131 i~~vL~~i~~ll~~ 144 (190)
T 3o2u_A 131 LQSIITGLLFLFLE 144 (190)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998875
No 33
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=98.55 E-value=2.4e-07 Score=79.74 Aligned_cols=79 Identities=18% Similarity=0.336 Sum_probs=65.8
Q ss_pred eEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceecccc------------
Q 047127 63 NLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYL------------ 126 (322)
Q Consensus 63 ~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL------------ 126 (322)
+++.+.|+|... |..|. +.+.|.+|.+||+.||.|.+. .. ..||+|+.+|+|++..|
T Consensus 33 ~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~-t~------i~HPNv~~~G~iCl~iL~~~~~~~~~~~~ 105 (165)
T 2ucz_A 33 NIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFT-PS------ILHPNIYPNGEVCISILHSPGDDPNMYEL 105 (165)
T ss_dssp CCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES-SC------CSCTTBCTTSBBCCGGGSCCCSCTTSTTT
T ss_pred CccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEe-CC------CccCCCCCCCcEeehhhCCccccccccCC
Confidence 588889988654 44442 889999999999999999986 32 46999999999999999
Q ss_pred --ccccCCCCCHHHHHHHHHHhhcc
Q 047127 127 --QTWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 127 --~~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
.+|++ ..++..++..+...|..
T Consensus 106 ~~~~W~p-~~~i~~vL~si~~ll~~ 129 (165)
T 2ucz_A 106 AEERWSP-VQSVEKILLSVMSMLSE 129 (165)
T ss_dssp TTTSCCT-TCCHHHHHHHHHHHHHS
T ss_pred CCCCCCC-cCcHHHHHHHHHHHHhC
Confidence 47986 78999999999998864
No 34
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=98.55 E-value=2.4e-07 Score=77.34 Aligned_cols=104 Identities=19% Similarity=0.313 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCc
Q 047127 32 LIRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYP 107 (322)
Q Consensus 32 ~v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~ 107 (322)
.+.+|+..+.+.-+ -. ..+...+ .++..+.++|... |..|. +-+.|.+|.+||+.||.|.+. ..
T Consensus 24 RL~kEl~~l~~~~~-~~--~~~~~~~----~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~-t~---- 91 (136)
T 2h2y_A 24 RIQKELNNFLKNPP-IN--CTIDVHP----SNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFL-QK---- 91 (136)
T ss_dssp HHHHHHHHHHHSCC-TT--EEEEECT----TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEEC-SS----
T ss_pred HHHHHHHHHHhCCC-CC--eEEEecc----ccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEe-CC----
Confidence 35678877655422 11 1112222 2588888888644 44442 889999999999999999886 21
Q ss_pred ccCCCCccCCCCceeccccc-cccCCCCCHHHHHHHHHHhhcc
Q 047127 108 IRQNHPFVSPCGTITTPYLQ-TWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 108 I~~~h~~Vd~~G~v~~pyL~-~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
| ..||+|+.+|+|++..|. +|++ ..++..++..+...|..
T Consensus 92 i-~~HPnv~~~G~ICl~iL~~~WsP-~~ti~~vL~si~sll~~ 132 (136)
T 2h2y_A 92 P-PKHTHVYSNGDICLSVLGDDYNP-SLSISGLILSIISMLSS 132 (136)
T ss_dssp C-CCCTTBCTTCCBCCGGGTTTCCT-TCCHHHHHHHHHHHHSS
T ss_pred C-CCCCcCCCCCEEECccccCCCCC-CCcHHHHHHHHHHHHhC
Confidence 1 379999999999999997 8985 88999999999988764
No 35
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=98.54 E-value=4.1e-06 Score=79.39 Aligned_cols=115 Identities=14% Similarity=0.276 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+|+..+...-|. .+....|...++ .++..+.++|... |..|. +.+.|.||.+||+.||.|.+. ...+..+
T Consensus 81 L~kEl~~L~k~~p~-g~~~~i~v~~~e--dnl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~-T~~g~~~ 156 (323)
T 3ceg_A 81 LAQEAVTLSTSLPL-SSSSSVFVRCDE--ERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLE-TTGGHSV 156 (323)
T ss_dssp HHHHHHHHHHHCCC-CSSCCEEEEEES--SCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEEC-CSTTTTC
T ss_pred HHHHHHHHHhCCCC-CcccceeecccC--CCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEe-ccCCCcc
Confidence 45677776655432 111222322222 1477778888654 44443 889999999999999999986 3322111
Q ss_pred cCCCCccCCCCceeccccc--------cccCCCCCHHHHHHHHHHhhccCCC
Q 047127 109 RQNHPFVSPCGTITTPYLQ--------TWSYPGYNLNDLVHNLVQIFSHDHP 152 (322)
Q Consensus 109 ~~~h~~Vd~~G~v~~pyL~--------~W~~~~s~L~~lv~~l~~~f~~~pP 152 (322)
.-||+|+.+|+|++..|. +|++..++|..++..+...|...-|
T Consensus 157 -ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~P 207 (323)
T 3ceg_A 157 -RFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEP 207 (323)
T ss_dssp -CCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSG
T ss_pred -cccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCC
Confidence 358999999999999996 7886334899999999999864333
No 36
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=98.50 E-value=3.3e-07 Score=79.27 Aligned_cols=79 Identities=15% Similarity=0.310 Sum_probs=66.4
Q ss_pred eEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccc-----cccCCC
Q 047127 63 NLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQ-----TWSYPG 133 (322)
Q Consensus 63 ~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~-----~W~~~~ 133 (322)
+++.+.|+|... |..|. +.+.|.+|.+||+.||.|.+. . +..||+|+.+|+|++..|. +|++ .
T Consensus 32 ~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~-t------~i~HPNv~~~G~iCl~iL~~~~~~~W~p-~ 103 (169)
T 1yh2_A 32 QMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFL-T------PIYHPNIDSAGRICLDVLKLPPKGAWRP-S 103 (169)
T ss_dssp CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES-S------CCCBTTBCTTCBBCCGGGSCTTTSCCCT-T
T ss_pred chheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEee-c------CCccccCCcCCeEecccccCCcccCCCC-C
Confidence 688899998654 44442 889999999999999999986 3 2468999999999999985 8985 7
Q ss_pred CCHHHHHHHHHHhhcc
Q 047127 134 YNLNDLVHNLVQIFSH 149 (322)
Q Consensus 134 s~L~~lv~~l~~~f~~ 149 (322)
.++..++..+...|..
T Consensus 104 ~~i~~vL~si~~ll~~ 119 (169)
T 1yh2_A 104 LNIATVLTSIQLLMSE 119 (169)
T ss_dssp SCHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHhC
Confidence 8999999999998875
No 37
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=98.50 E-value=1.2e-06 Score=75.94 Aligned_cols=103 Identities=17% Similarity=0.272 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+|+..+.+. +.- ...+...++ .+++.+.|+|... |..|. +.+.|.+|.+||+.||.|.+. ..
T Consensus 22 L~kEl~~l~~~-~~~--gi~~~p~~~---~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~-T~----- 89 (172)
T 2awf_A 22 LRRQLAELNKN-PVE--GFSAGLIDD---NDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFI-TE----- 89 (172)
T ss_dssp HHHHHHHHHHS-CCT--TEEEEESST---TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEEC-SC-----
T ss_pred HHHHHHHHHhC-CCC--CEEEEECCC---ccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCccccc-CC-----
Confidence 46787776553 211 111122222 2577889988654 44442 889999999999999999987 32
Q ss_pred cCCCCccCCCCceeccccc--------------cccCCCCCHHHHHHHHHHhhcc
Q 047127 109 RQNHPFVSPCGTITTPYLQ--------------TWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 109 ~~~h~~Vd~~G~v~~pyL~--------------~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
..||+|+.+|+|++..|. +|++ ..++..++..+...|..
T Consensus 90 -i~HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP-~~ti~~vL~sI~sll~~ 142 (172)
T 2awf_A 90 -IWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLP-IHTVETIMISVISMLAD 142 (172)
T ss_dssp -CCCTTBCTTCBBCCGGGSCC---------CTTSCCT-TCCHHHHHHHHHHHHSC
T ss_pred -CccCCCCCCCcEehhhcCCcccccccccccCCCCCC-cCcHHHHHHHHHHHHHC
Confidence 368999999999999985 7985 78999999999998865
No 38
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=98.49 E-value=4.6e-07 Score=81.46 Aligned_cols=102 Identities=19% Similarity=0.339 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+|+..+...-+ +...+...+| +++.+.|+|... |..|. +.+.|.+|.+||+.||.|.+. .
T Consensus 28 L~kEl~~l~~~~~---~gi~~~p~~~----nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~-T------ 93 (216)
T 2pwq_A 28 LQKELKDIENENV---QEIDAHIKDS----NFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFV-T------ 93 (216)
T ss_dssp HHHHHHHHHHSCT---TTEEEEECSS----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES-S------
T ss_pred HHHHHHHHHhCCC---CCEEEEEcCC----ccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCccccc-C------
Confidence 4678777655432 2222222222 588999999655 44443 889999999999999999986 3
Q ss_pred cCCCCccC-CCCceeccccc-cccCCCCCHHHHHHHHHHhhcc
Q 047127 109 RQNHPFVS-PCGTITTPYLQ-TWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 109 ~~~h~~Vd-~~G~v~~pyL~-~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
+.-||+|+ .+|.|++..|. +|++ ..++..++..+...|..
T Consensus 94 ~i~HPNI~~~~G~ICL~iL~~~WsP-~~ti~~VL~sI~sLL~~ 135 (216)
T 2pwq_A 94 KIWHPNISSQTGAICLDVLKNEWSP-ALTIRTALLSIQALLSD 135 (216)
T ss_dssp CCCBTTBCTTTCBBCCHHHHHHCCT-TCCHHHHHHHHHHHHHS
T ss_pred CCcCCCCcCCCCEEEchhhcccCCC-CCcHHHHHHHHHHHHhC
Confidence 24689999 58999999998 5996 79999999999998875
No 39
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=98.48 E-value=6.7e-07 Score=79.04 Aligned_cols=79 Identities=16% Similarity=0.342 Sum_probs=66.6
Q ss_pred eEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccC-CCCceeccccc-cccCCCCCH
Q 047127 63 NLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVS-PCGTITTPYLQ-TWSYPGYNL 136 (322)
Q Consensus 63 ~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd-~~G~v~~pyL~-~W~~~~s~L 136 (322)
+++.+.|+|... |..|. +.+.|.+|.+||+.||.|.+. . +.-||+|+ .+|.|++..|. +|++ ..++
T Consensus 73 nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~-T------~i~HPNI~~~~G~ICL~iL~~~WsP-~~ti 144 (193)
T 2f4z_A 73 DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFV-T------KIWHPNISSQTGAICLDILKHEWSP-ALTI 144 (193)
T ss_dssp EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES-S------CCCBTTBCTTTCBBCCGGGTTTCCT-TSCH
T ss_pred CcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeEEEe-c------CCccCCCcCCCCEEECccccccCCC-CCCH
Confidence 699999999654 44442 889999999999999999986 3 24689999 58999999998 4985 8899
Q ss_pred HHHHHHHHHhhcc
Q 047127 137 NDLVHNLVQIFSH 149 (322)
Q Consensus 137 ~~lv~~l~~~f~~ 149 (322)
..++..+...|..
T Consensus 145 ~~vL~sI~sll~~ 157 (193)
T 2f4z_A 145 RTALLSIQAMLAD 157 (193)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998875
No 40
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=98.47 E-value=8.2e-06 Score=79.54 Aligned_cols=103 Identities=18% Similarity=0.343 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+|+..+.+.-| +...+...+ .+++.+.|+|... |+.|. +.+.|.+|.+||+.||.|.+. .
T Consensus 8 L~kEl~~l~~~~~---~~~~~~p~~----~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~-t------ 73 (399)
T 4ddg_A 8 IHKELNDLARDPP---AQCSAGPVG----DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT-T------ 73 (399)
T ss_dssp HHHHHHHHHHSCC---SSEEEEEET----TEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEES-S------
T ss_pred HHHHHHHHHhCCC---CCEEEEEcC----CcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEee-c------
Confidence 3567777655322 112222222 2799999999744 44343 789999999999999999986 3
Q ss_pred cCCCCccCCCCceeccccc-cccCCCCCHHHHHHHHHHhhccC
Q 047127 109 RQNHPFVSPCGTITTPYLQ-TWSYPGYNLNDLVHNLVQIFSHD 150 (322)
Q Consensus 109 ~~~h~~Vd~~G~v~~pyL~-~W~~~~s~L~~lv~~l~~~f~~~ 150 (322)
+..||+|+++|.|++..|. +|++ ..++..++..+...+...
T Consensus 74 ~i~HPnv~~~G~iCl~il~~~W~p-~~~i~~vL~~i~~ll~~p 115 (399)
T 4ddg_A 74 RIYHPNINSNGSISLDILRSQWSP-ALTISKVLLSICSLLCDP 115 (399)
T ss_dssp CCCCTTBCTTCBBCCGGGTTSCCT-TCCHHHHHHHHHHHHHSC
T ss_pred cccccccCCCCeEeCcccccCCCc-cccHHHHHHHHHHHHcCC
Confidence 2579999999999999995 8985 789999999999988753
No 41
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.46 E-value=4.5e-07 Score=80.53 Aligned_cols=80 Identities=19% Similarity=0.363 Sum_probs=66.7
Q ss_pred eEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCC-CCceecccc-ccccCCCCCH
Q 047127 63 NLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSP-CGTITTPYL-QTWSYPGYNL 136 (322)
Q Consensus 63 ~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~-~G~v~~pyL-~~W~~~~s~L 136 (322)
++..+.|+|... |..|. +.+.|.+|.+||+.||.|.+. . +..||+|+. +|.|++..| .+|++ ..++
T Consensus 36 nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~-t------~i~HPnv~~~~G~iCl~iL~~~W~p-~~~i 107 (201)
T 3k9o_A 36 NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI-T------KIWHPNISSVTGAICLDILKDQWAA-AMTL 107 (201)
T ss_dssp TSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES-S------CCCBTTBCTTTCBBCCGGGTTTCCT-TCCH
T ss_pred CccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccc-c------CcccCCCcCCCCeeeCcccccCCCC-CCCH
Confidence 688999999744 44443 889999999999999999986 3 246999995 999999999 58985 8999
Q ss_pred HHHHHHHHHhhccC
Q 047127 137 NDLVHNLVQIFSHD 150 (322)
Q Consensus 137 ~~lv~~l~~~f~~~ 150 (322)
..++..+...|...
T Consensus 108 ~~vL~~i~~ll~~p 121 (201)
T 3k9o_A 108 RTVLLSLQALLAAA 121 (201)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999988753
No 42
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=98.45 E-value=5.8e-07 Score=78.70 Aligned_cols=79 Identities=14% Similarity=0.298 Sum_probs=66.2
Q ss_pred eEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceecccc------------
Q 047127 63 NLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYL------------ 126 (322)
Q Consensus 63 ~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL------------ 126 (322)
+|+.+.++|... |..|. +.+.|.+|.+||+.||.|.+. .. .-||+|+.+|+|++..|
T Consensus 36 nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~-t~------i~HPnV~~~G~iClsiL~~~~~~~~~~~~ 108 (183)
T 3rz3_A 36 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFL-TK------MWHPNIYETGDVCISILHPPVDDPQSGEL 108 (183)
T ss_dssp CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES-SC------CCCTTBCTTSBBCCTTC------------
T ss_pred chhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEec-CC------CccCCCCCCCcEehhhcCccccccccccc
Confidence 688899999654 44443 889999999999999999986 32 46899999999999999
Q ss_pred --ccccCCCCCHHHHHHHHHHhhcc
Q 047127 127 --QTWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 127 --~~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
.+|++ ..++..++..+...|.+
T Consensus 109 ~~~~W~p-~~~i~~vL~si~~ll~~ 132 (183)
T 3rz3_A 109 PSERWNP-TQNVRTILLSVISLLNE 132 (183)
T ss_dssp --CCCCT-TCCHHHHHHHHHHHHHS
T ss_pred ccCCCCC-cCcHHHHHHHHHHHHhC
Confidence 57985 78899999999988865
No 43
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=98.44 E-value=5.5e-07 Score=78.08 Aligned_cols=80 Identities=19% Similarity=0.271 Sum_probs=66.5
Q ss_pred eEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccC-CCCceeccccc--cccCCCCC
Q 047127 63 NLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVS-PCGTITTPYLQ--TWSYPGYN 135 (322)
Q Consensus 63 ~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd-~~G~v~~pyL~--~W~~~~s~ 135 (322)
+++.+.|+|... |..|. +.+.|.+|.+||+.||.|.+. .+ +.-||+|| .+|.|++..|. +|++ ..+
T Consensus 46 nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~-t~-----~i~HPni~~~~G~iCl~iL~~~~W~p-~~~ 118 (172)
T 2y9m_A 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFM-QN-----NILHCNVKSATGEICLNILKPEEWTP-VWD 118 (172)
T ss_dssp CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEEC-TT-----SCCCTTEETTTTEECCGGGSTTTCCT-TCC
T ss_pred chhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEEe-eC-----CeecCCCcCCCCEEeccccCCCCCCC-cCc
Confidence 588889998644 44443 889999999999999999997 32 24699997 78999999996 8995 789
Q ss_pred HHHHHHHHHHhhcc
Q 047127 136 LNDLVHNLVQIFSH 149 (322)
Q Consensus 136 L~~lv~~l~~~f~~ 149 (322)
+..++..+...|..
T Consensus 119 i~~vL~si~~ll~~ 132 (172)
T 2y9m_A 119 LLHCVHAVWRLLRE 132 (172)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998875
No 44
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=98.42 E-value=5.7e-07 Score=75.18 Aligned_cols=79 Identities=23% Similarity=0.415 Sum_probs=65.1
Q ss_pred eEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCC-Cce--eccccccccCCCCC
Q 047127 63 NLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPC-GTI--TTPYLQTWSYPGYN 135 (322)
Q Consensus 63 ~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~-G~v--~~pyL~~W~~~~s~ 135 (322)
++..+.|+|.-. |..|. +-+.|.+|.+||++||.|.+. . +..||+|+.+ |+| ++..|.+|++ ..+
T Consensus 38 nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~-t------~i~HPnv~~~~G~i~~cL~~l~~W~p-~~~ 109 (138)
T 1jat_B 38 TMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFI-S------KINLPCVNPTTGEVQTDFHTLRDWKR-AYT 109 (138)
T ss_dssp TCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEES-B------CCCCTTBCTTTCBBCTTSHHHHTCCT-TCC
T ss_pred cceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEE-c------ccccCCEeCCCCEEeeecccCCCCCC-cCc
Confidence 588889988643 33332 889999999999999999886 2 2469999997 999 7888889996 789
Q ss_pred HHHHHHHHHHhhcc
Q 047127 136 LNDLVHNLVQIFSH 149 (322)
Q Consensus 136 L~~lv~~l~~~f~~ 149 (322)
+..++..+...|..
T Consensus 110 i~~vl~~i~~ll~~ 123 (138)
T 1jat_B 110 METLLLDLRKEMAT 123 (138)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999998864
No 45
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=98.41 E-value=7.6e-07 Score=76.70 Aligned_cols=103 Identities=19% Similarity=0.304 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeecCCCCC---eeEEEeecccCCCCCCEEEEecCCCCCccc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVSQSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIR 109 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~ 109 (322)
+.+|+..+.+.-+. ...+. ..++ .++..+.++|.-.|..|. +-+.|.+|.+||+.||.|.+. . +
T Consensus 19 L~kEl~~l~~~~~~---gi~~~-~~~~--~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~-t------~ 85 (167)
T 3fn1_B 19 LVKEVAELEANLPC---TCKVH-FPDP--NKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCL-T------K 85 (167)
T ss_dssp HHHHHHHHGGGSCT---TEEEE-CSSS--SCTTEEEEEECCSSSTTTTCCEEEEEECCTTBTTBCCEEEEC-S------C
T ss_pred HHHHHHHHHhCCCC---CEEEE-eCCC--CcceeEEEEECCCCCccCCCEEEEEEECCCCCCCCCCeeEec-C------C
Confidence 46777776554321 11111 1222 257777777732233332 789999999999999999886 3 2
Q ss_pred CCCCccCCCCceeccccc-------cccCCCCCHHHHHHHHHHhhcc
Q 047127 110 QNHPFVSPCGTITTPYLQ-------TWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 110 ~~h~~Vd~~G~v~~pyL~-------~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
.-||+|+.+|+|++..|. +|++ ..++..++..+...|.+
T Consensus 86 i~HPnv~~~G~iCl~iL~~~~~~~~~W~p-~~~i~~vl~~i~~ll~~ 131 (167)
T 3fn1_B 86 IWHPNITETGEICLSLLREHSIDGTGWAP-TRTLKDVVWGLNSLFTD 131 (167)
T ss_dssp CCCSSBCTTCCBCCGGGSBCSSSTTSBCT-TCCHHHHHHHHHHTTTT
T ss_pred cccCCCCCCCEEechhhccCCCCCCCCCC-cCcHHHHHHHHHHHHcC
Confidence 469999999999999998 5885 78999999999998876
No 46
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=98.41 E-value=1.2e-06 Score=77.00 Aligned_cols=103 Identities=10% Similarity=0.181 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+|+..+...-+ +...+...+ .+++.+.++|.-. |..|. +.+.|.+|.+||+.||.|.+. .
T Consensus 19 L~kEl~~l~~~~~---~~i~~~p~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~-T------ 84 (187)
T 2f4w_A 19 LKQDYLRIKKDPV---PYICAEPLP----SNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMI-T------ 84 (187)
T ss_dssp HHHHHHHHHHSCC---TTEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEEC-S------
T ss_pred HHHHHHHHHhCCC---CCEEEEEcC----CccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccc-C------
Confidence 4678777665422 112222222 2699999999644 44442 889999999999999999886 2
Q ss_pred cCCCCccCCCCceecccc----ccccCCCCCHHHHHHHHHHhhccCCC
Q 047127 109 RQNHPFVSPCGTITTPYL----QTWSYPGYNLNDLVHNLVQIFSHDHP 152 (322)
Q Consensus 109 ~~~h~~Vd~~G~v~~pyL----~~W~~~~s~L~~lv~~l~~~f~~~pP 152 (322)
+ |++++++|+|++..| ++|++ ..++..++..+...|...-|
T Consensus 85 -~-~~~~~~~G~ICL~iL~~~~~~W~P-~~ti~~vL~si~sll~~p~p 129 (187)
T 2f4w_A 85 -P-NGRFKCNTRLCLSITDFHPDTWNP-AWSVSTILTGLLSFMVEKGP 129 (187)
T ss_dssp -C-CSSBCTTSCBC----------CCT-TCCHHHHHHHHHHHHHSCCC
T ss_pred -C-CceeccCCeEeeeccccCccCCCC-cCcHHHHHHHHHHHhcCCCC
Confidence 2 588999999999999 58985 89999999999998876444
No 47
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=98.40 E-value=5e-07 Score=81.13 Aligned_cols=79 Identities=19% Similarity=0.317 Sum_probs=65.0
Q ss_pred eEEEEEEeeeec-CCCC---CeeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCC-CCceeccccc-cccCCCCCH
Q 047127 63 NLFKVSGCFHVS-QSTP---PIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSP-CGTITTPYLQ-TWSYPGYNL 136 (322)
Q Consensus 63 ~Ll~l~Gtipv~-g~~y---~iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~-~G~v~~pyL~-~W~~~~s~L 136 (322)
.+..+.|+|... |..| .+.+.|.+|.+||+.||.|.+. . +.-||+|+. +|.|++..|. +|++ ..++
T Consensus 31 ~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~-T------~i~HPNI~~~~G~ICL~iL~~~WsP-~~ti 102 (215)
T 1tte_A 31 DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFD-T------KVYHPNISSVTGAICLDILRNAWSP-VITL 102 (215)
T ss_dssp SCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEET-T------TCCCSSSCSSSSCCCSSTTTCCSCT-TCCH
T ss_pred cccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCccccc-C------CCccCcCcCCCCEEECccCCCCCCC-cCcH
Confidence 455888888543 3333 2889999999999999999996 3 256999999 9999999997 6985 7899
Q ss_pred HHHHHHHHHhhcc
Q 047127 137 NDLVHNLVQIFSH 149 (322)
Q Consensus 137 ~~lv~~l~~~f~~ 149 (322)
..++..+...|..
T Consensus 103 ~~VL~sI~sLL~~ 115 (215)
T 1tte_A 103 KSALISLQALLQS 115 (215)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999875
No 48
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=98.40 E-value=1e-06 Score=75.62 Aligned_cols=81 Identities=15% Similarity=0.305 Sum_probs=65.8
Q ss_pred eEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccC-CCCceecccc---ccccCCCC
Q 047127 63 NLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVS-PCGTITTPYL---QTWSYPGY 134 (322)
Q Consensus 63 ~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd-~~G~v~~pyL---~~W~~~~s 134 (322)
+|+.+.++|... |..|. +-+.|.+|.+||+.||.|.+. . +-.||+|+ .+|+|++.+| .+|++ ..
T Consensus 57 ~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~-T------~i~HPNV~~~~G~ICl~iL~~~~~WsP-~~ 128 (160)
T 2a4d_A 57 TLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFV-T------KINMNGVNSSNGVVDPRAISVLAKWQN-SY 128 (160)
T ss_dssp TCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES-B------CCCCTTBCTTTCBBCGGGSHHHHTCCT-TC
T ss_pred cceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEe-c------CceeCCEECCCCEEehhhcCCccCCCc-cC
Confidence 488899998654 44442 889999999999999999886 3 13699999 6999998887 48986 78
Q ss_pred CHHHHHHHHHHhhccCC
Q 047127 135 NLNDLVHNLVQIFSHDH 151 (322)
Q Consensus 135 ~L~~lv~~l~~~f~~~p 151 (322)
++..++..+...|..+|
T Consensus 129 ti~~vL~sI~~ll~~~p 145 (160)
T 2a4d_A 129 SIKVVLQELRRLMMSKE 145 (160)
T ss_dssp CHHHHHHHHHHHHTSTT
T ss_pred cHHHHHHHHHHHHccCC
Confidence 99999999999986543
No 49
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=98.39 E-value=5.6e-07 Score=79.09 Aligned_cols=81 Identities=16% Similarity=0.306 Sum_probs=66.5
Q ss_pred eEEEEEEeeee--cCCCC--------------CeeEEEeecccCCCCCCEEEEecCCCCCcccCCCC-ccCCCCceeccc
Q 047127 63 NLFKVSGCFHV--SQSTP--------------PIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHP-FVSPCGTITTPY 125 (322)
Q Consensus 63 ~Ll~l~Gtipv--~g~~y--------------~iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~-~Vd~~G~v~~py 125 (322)
+|+.+.++|.. .+..| .+-+.|.||.+||+.||.|.+.-| --|+ +|+.+|.|++..
T Consensus 58 nl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP~V~f~tp-------i~hPnnV~~~G~ICL~i 130 (186)
T 1zuo_A 58 SLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLP-------VLSGGYVLGGGALCMEL 130 (186)
T ss_dssp EEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCEEEEEES-------CEESTTBCGGGBBCCGG
T ss_pred ccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCCeEEEeCC-------ccCCCccCCCCcEEecc
Confidence 79999999975 23333 388999999999999999988722 2367 799999999999
Q ss_pred cc--cccCCCCCHHHHHHHHHHhhccCC
Q 047127 126 LQ--TWSYPGYNLNDLVHNLVQIFSHDH 151 (322)
Q Consensus 126 L~--~W~~~~s~L~~lv~~l~~~f~~~p 151 (322)
|. +|++ ..++..++..+...|.+.+
T Consensus 131 L~~~~WsP-~~ti~~VL~sI~slL~~p~ 157 (186)
T 1zuo_A 131 LTKQGWSS-AYSIESVIMQINATLVKGK 157 (186)
T ss_dssp GSTTTCCT-TSCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCC-cCcHHHHHHHHHHHHcCCC
Confidence 96 7995 8999999999999887644
No 50
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=98.37 E-value=7.7e-07 Score=77.01 Aligned_cols=102 Identities=16% Similarity=0.275 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+|+..+.+.-+ +...+...+| +++.+.|+|... |..|. +.+.|.+|.+||+.||.|.+. .
T Consensus 28 L~kEl~~l~~~~~---~gi~~~p~~~----nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~-T------ 93 (169)
T 1yrv_A 28 LHRDFCDLKENNY---KGITAKPVSE----DMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFI-T------ 93 (169)
T ss_dssp HHHHHHHHHHHCC---TTEEEEECST----TSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEES-S------
T ss_pred HHHHHHHHHhCCC---CCEEEEEcCC----ccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceec-C------
Confidence 4677777665422 1112222222 588999999643 44442 889999999999999999986 3
Q ss_pred cCCCCcc-CCCCceeccccc---cccCCCCCHHHHHHHHHHhhcc
Q 047127 109 RQNHPFV-SPCGTITTPYLQ---TWSYPGYNLNDLVHNLVQIFSH 149 (322)
Q Consensus 109 ~~~h~~V-d~~G~v~~pyL~---~W~~~~s~L~~lv~~l~~~f~~ 149 (322)
+.-||+| +.+|.|++..|. +|++ ..++..++..+...|..
T Consensus 94 ~i~HPNI~~~~G~ICL~iL~~~~~WsP-~~ti~~vL~sI~sll~~ 137 (169)
T 1yrv_A 94 IPFHPNVDPHTGQPCIDFLDNPEKWNT-NYTLSSILLALQVMLSN 137 (169)
T ss_dssp CCCCTTBCTTTCCBCCHHHHCGGGCCT-TCCHHHHHHHHHHHHTS
T ss_pred CCccCcccCCCCeEeehhhcCCcCCCC-cCCHHHHHHHHHHHHhC
Confidence 2468999 799999999996 8996 89999999999999865
No 51
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=98.37 E-value=9.6e-07 Score=76.13 Aligned_cols=79 Identities=18% Similarity=0.319 Sum_probs=64.0
Q ss_pred eEEEEEEeeeec-CCCCC-----eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceecccc-ccccCCCCC
Q 047127 63 NLFKVSGCFHVS-QSTPP-----IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYL-QTWSYPGYN 135 (322)
Q Consensus 63 ~Ll~l~Gtipv~-g~~y~-----iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL-~~W~~~~s~ 135 (322)
+++.+.++|... |..|. +-+.|.+|.+||+.||.|.+. .. ..||+|+.+|.|++..| .+|++ ..+
T Consensus 48 nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v~f~-t~------i~HPnv~~~G~iCl~il~~~W~p-~~~ 119 (167)
T 4ds2_A 48 TIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFV-TP------VYSPLVTGEGGICDRMVNDFWTP-DQH 119 (167)
T ss_dssp STTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEEEES-SC------CCCSSCCTTSCCCTHHHHTTCCT-TSC
T ss_pred cccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEEEEe-CC------cccccCCCCCEEEcccCcCCCCC-CCC
Confidence 688899998755 55555 889999999999999999986 32 46899999999999998 48985 788
Q ss_pred HHHH-HHHHHHhhcc
Q 047127 136 LNDL-VHNLVQIFSH 149 (322)
Q Consensus 136 L~~l-v~~l~~~f~~ 149 (322)
+..+ +..+...|+.
T Consensus 120 i~~vll~~l~~l~~~ 134 (167)
T 4ds2_A 120 ASDVIKLVLDRVFSQ 134 (167)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHhc
Confidence 8874 4566677765
No 52
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=98.36 E-value=9.5e-07 Score=76.54 Aligned_cols=81 Identities=15% Similarity=0.305 Sum_probs=65.2
Q ss_pred eEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccC-CCCceecccc---ccccCCCC
Q 047127 63 NLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVS-PCGTITTPYL---QTWSYPGY 134 (322)
Q Consensus 63 ~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd-~~G~v~~pyL---~~W~~~~s 134 (322)
+|+.+.|+|... |..|. +-+.|.+|.+||+.||.|.+. . +-.||+|+ .+|.|++.+| .+|++ ..
T Consensus 67 nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~-T------~i~HPNV~~~~G~ICl~iL~~~~~WsP-~~ 138 (170)
T 2hlw_A 67 TLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFV-T------KINMNGVNSSNGVVDPRAISVLAKWQN-SY 138 (170)
T ss_dssp SCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEEC-B------CCCCSSBCSSSCBBCTTTCHHHHTCCS-SC
T ss_pred cceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEe-c------ccccCCEeCCCCEEEhhhcCCCCCCCc-cC
Confidence 488889988643 33332 778999999999999999886 3 23699999 7999998887 58986 78
Q ss_pred CHHHHHHHHHHhhccCC
Q 047127 135 NLNDLVHNLVQIFSHDH 151 (322)
Q Consensus 135 ~L~~lv~~l~~~f~~~p 151 (322)
++..++..+...|..+|
T Consensus 139 ti~~vL~sI~~ll~~~p 155 (170)
T 2hlw_A 139 SIKVVLQELRRLMMSKE 155 (170)
T ss_dssp CHHHHHHHHHHHHHSTT
T ss_pred cHHHHHHHHHHHHccCC
Confidence 99999999999887543
No 53
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=98.35 E-value=1.2e-06 Score=80.58 Aligned_cols=80 Identities=19% Similarity=0.363 Sum_probs=66.7
Q ss_pred eEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCC-CCceecccc-ccccCCCCCH
Q 047127 63 NLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSP-CGTITTPYL-QTWSYPGYNL 136 (322)
Q Consensus 63 ~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~-~G~v~~pyL-~~W~~~~s~L 136 (322)
+++.+.|+|... |..|. +.+.|.+|.+||+.||.|.+. . +..||+|+. +|.|++..| .+|++ ..++
T Consensus 88 nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~-T------~i~HPNV~~~~G~ICL~iL~~~WsP-~~ti 159 (253)
T 3e46_A 88 NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI-T------KIWHPNISSVTGAICLDILKDQWAA-AMTL 159 (253)
T ss_dssp TSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES-S------CCCBTTBCTTTCBBCCGGGTTCCCT-TCCH
T ss_pred cccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeec-C------CCccCCccCCCCeeecccccCCCCC-CCCH
Confidence 689999999744 44443 889999999999999999886 3 246899995 899999999 58985 8999
Q ss_pred HHHHHHHHHhhccC
Q 047127 137 NDLVHNLVQIFSHD 150 (322)
Q Consensus 137 ~~lv~~l~~~f~~~ 150 (322)
..++..+...|...
T Consensus 160 ~~vL~sI~~ll~~p 173 (253)
T 3e46_A 160 RTVLLSLQALLAAA 173 (253)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999988753
No 54
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=98.32 E-value=6.7e-07 Score=78.12 Aligned_cols=79 Identities=22% Similarity=0.333 Sum_probs=63.9
Q ss_pred eEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCC-CCceecccc-ccccCCCCCH
Q 047127 63 NLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSP-CGTITTPYL-QTWSYPGYNL 136 (322)
Q Consensus 63 ~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~-~G~v~~pyL-~~W~~~~s~L 136 (322)
.+..+.++|... |..|. +.+.|.+|.+||+.||.|.+. . +..||+|+. +|.|++..| .+|++ ..++
T Consensus 49 dl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~-t------~i~HPNV~~~~G~ICL~iL~~~WsP-~~ti 120 (179)
T 2z5d_A 49 GLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFM-N------KIFHPNIDEASGTVCLDVINQTWTA-LYDL 120 (179)
T ss_dssp ETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES-S------CCCBTTBCTTTCBBCHHHHHHHCCT-TCCT
T ss_pred CCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEe-c------CCccCcCCCCCCeEeccccccCCCC-CCCH
Confidence 468888888644 33332 889999999999999999996 3 246899999 999999999 58995 7899
Q ss_pred HHHHHH-HHHhhcc
Q 047127 137 NDLVHN-LVQIFSH 149 (322)
Q Consensus 137 ~~lv~~-l~~~f~~ 149 (322)
..++.. +...|..
T Consensus 121 ~~iL~s~I~~Ll~~ 134 (179)
T 2z5d_A 121 TNIFESFLPQLLAY 134 (179)
T ss_dssp THHHHTHHHHHHHS
T ss_pred HHHHHHHHHHHHhC
Confidence 998888 7777764
No 55
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=98.31 E-value=1.7e-06 Score=73.59 Aligned_cols=79 Identities=20% Similarity=0.336 Sum_probs=63.0
Q ss_pred eEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccC-CCCceeccccc-cccCCCCCH
Q 047127 63 NLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVS-PCGTITTPYLQ-TWSYPGYNL 136 (322)
Q Consensus 63 ~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd-~~G~v~~pyL~-~W~~~~s~L 136 (322)
++..+.++|... |..|. +-+.|.+|.+||+.||.|.+. . +..||+|+ .+|.|++..|. +|++ ..++
T Consensus 27 ~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~-t------~i~HPni~~~~G~iCl~il~~~W~p-~~~i 98 (152)
T 2onu_A 27 STQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFM-N------KLLHPNVDEASGSVCLDVINQTWTP-LYSL 98 (152)
T ss_dssp EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES-S------CCCCTTBCTTTCBBCHHHHHHHCCT-TCCH
T ss_pred ccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEe-c------CCccCcCcCcCCeEecccccccCCC-CCCH
Confidence 699999999543 33332 889999999999999999986 3 24699999 48999999997 6985 7899
Q ss_pred HHHHHH-HHHhhcc
Q 047127 137 NDLVHN-LVQIFSH 149 (322)
Q Consensus 137 ~~lv~~-l~~~f~~ 149 (322)
..++.. +...|..
T Consensus 99 ~~vl~~ii~~Ll~~ 112 (152)
T 2onu_A 99 VNVFEVFLPQLLTY 112 (152)
T ss_dssp HHHHHTHHHHHHHS
T ss_pred HHHHHHHHHHHHhC
Confidence 988876 4566653
No 56
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=98.21 E-value=1.6e-06 Score=75.13 Aligned_cols=97 Identities=16% Similarity=0.259 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCCceeEEEEEEeeeec-CCCCC---eeEEEeecccCCCCCCEEEEecCCCCCcc
Q 047127 33 IRKQLLSLLQNYPSFNLSNDTFTHNDGTAVNLFKVSGCFHVS-QSTPP---IHFTLWLHENYPSMAPMAFIVSSNSMYPI 108 (322)
Q Consensus 33 v~~dv~~~l~~y~~L~p~~~~~t~~dG~~~~Ll~l~Gtipv~-g~~y~---iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I 108 (322)
+.+|+..+...- + .+.. + .+++.+.++|... |..|. +.+.|.+|.+||+.||.|.+. .
T Consensus 17 L~~El~~l~~~~----~--~v~~-~----~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~-t------ 78 (171)
T 1yf9_A 17 REMDYMRLCNST----R--KVYP-S----DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFC-N------ 78 (171)
T ss_dssp HHHHHHHHHSSS----S--CEEE-C----SSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES-S------
T ss_pred HHHHHHHHHhCC----C--CCCC-C----CCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEee-c------
Confidence 457888776542 1 1222 2 2588889998644 44442 889999999999999999986 3
Q ss_pred cCCCCccC-CCCceeccccc-cccCCCCCHHHHHHHH-HHhhc
Q 047127 109 RQNHPFVS-PCGTITTPYLQ-TWSYPGYNLNDLVHNL-VQIFS 148 (322)
Q Consensus 109 ~~~h~~Vd-~~G~v~~pyL~-~W~~~~s~L~~lv~~l-~~~f~ 148 (322)
+.-||+|+ .+|.|++..|. +|++ ..++..++..+ ...++
T Consensus 79 ~i~HPNi~~~~G~iCl~iL~~~W~p-~~~i~~vL~sil~~ll~ 120 (171)
T 1yf9_A 79 RILHPNVDERSGSVCLDVINQTWTP-MYQLENIFDVFLPQLLR 120 (171)
T ss_dssp CCCBTTBCTTTCBBCHHHHHHHCCT-TCCTHHHHHTHHHHHHH
T ss_pred CcccccCcccCCeEeccccccCCCC-CCcHHHHHHHHHHHHHh
Confidence 24699999 59999999997 8995 78899888776 45665
No 57
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=97.27 E-value=0.00012 Score=62.78 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=46.3
Q ss_pred CCCCeeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceecccccc--ccC--CCCCHHHHH
Q 047127 76 STPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQT--WSY--PGYNLNDLV 140 (322)
Q Consensus 76 ~~y~iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~~--W~~--~~s~L~~lv 140 (322)
..|.+.+.|-||.+||.+||-|.+ |+.++ -|+.|+.+|+|++..|.. |.. |..++..++
T Consensus 81 ~~y~F~L~~~fPe~YP~~PPeV~F--~~~~~----~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL 143 (172)
T 2z6o_A 81 LKYEFDIEFDIPITYPTTAPEIAV--PELDG----KTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLM 143 (172)
T ss_dssp EEEEEEEEEECCTTTTTSCCCCBC--GGGTT----TCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHH
T ss_pred cceEEEEEEECCCCCCCCCCeeee--CCCCC----CCCCCCCCCcEechhhccccccccCCccCHHHHH
Confidence 357799999999999999999988 44322 378899999999999943 652 477776655
No 58
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=94.67 E-value=0.0078 Score=50.70 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=40.3
Q ss_pred CCCCCeeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccccccC
Q 047127 75 QSTPPIHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSY 131 (322)
Q Consensus 75 g~~y~iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~~W~~ 131 (322)
-..|-+.+.|=+|.+||..||.|-+ |+.+ --|+.+..+|+|++..+ |.+
T Consensus 82 ~~kyeFkLefdiP~tYP~tPPeI~F--p~ld----gkt~kmYr~GkICLdIh--wkP 130 (168)
T 3kpa_A 82 NEKYEFEMNFDIPVTYPQAPPEIAL--PELE----GKTVKMYRGGKICMTTH--FFP 130 (168)
T ss_dssp TEEEEEEEEEECCTTTTTSCCCCBC--GGGT----TTCSSEETTTEECCCTT--HHH
T ss_pred cceeEEEEEEeCCccCCCCCCEeec--cccc----CcCccccCCCcEEeccc--cch
Confidence 4578999999999999999999988 5432 23688999999999875 764
No 59
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=91.18 E-value=1.5 Score=38.26 Aligned_cols=116 Identities=10% Similarity=0.020 Sum_probs=65.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCccccccccCCCccccc---ccCChhHHHHHHhhh
Q 047127 191 RTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGDPKAIGVILGDRVEDAF---EAIDAESKAELEGSA 267 (322)
Q Consensus 191 ~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~~~~~~~~~~~dide~v---~~~~~l~~QLlel~A 267 (322)
..+++++.+...-.++......|+..++.+++....++....+...+.. +.|..+ ...+.+...|-..++
T Consensus 66 ~~~~~~e~l~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q-------~~~~~ls~~~sp~~L~~~L~~a~~ 138 (192)
T 2p22_C 66 DFAGKIHAFRDQFKQLEENFEDLHEQKDKVQALLENARILESKYVASWQ-------DYHSEFSKKYGDIALKKKLEQNTK 138 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhccCCHHHHHHHHHHHHH
Confidence 4445555554444445455555666666666655555555444422211 333222 233446666666666
Q ss_pred hhhhhHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047127 268 ADEAIEDVIYALDKALERG--VVSFDSYIRQVRILAREQFFHRDLLVKLEV 316 (322)
Q Consensus 268 ed~AieDtIy~L~~aL~~g--~I~ld~flK~vR~LaReQF~~Rali~Ki~~ 316 (322)
+-.+-.| .|.+.|..| .++++.||++.|..-..--+.|.-..+...
T Consensus 139 e~eeeS~---~l~~~F~~~~~e~dv~~Fl~~y~~~R~~yH~RreK~~rw~e 186 (192)
T 2p22_C 139 KLDEESS---QLETTTRSIDSADDLDQFIKNYLDIRTQYHLRREKLATWDK 186 (192)
T ss_dssp HHHHHHH---HHHHSCSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH---HHHHHHcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6554444 456777777 699999999999876655444444444433
No 60
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=85.18 E-value=3.6 Score=39.33 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=20.6
Q ss_pred hHHHHHHhhhhhhhhHHHHHHHHHH----HhcC---CCCHHHHHHHHHH
Q 047127 258 ESKAELEGSAADEAIEDVIYALDKA----LERG---VVSFDSYIRQVRI 299 (322)
Q Consensus 258 l~~QLlel~Aed~AieDtIy~L~~a----L~~g---~I~ld~flK~vR~ 299 (322)
|-+-|-+++.+.+-||=.|.+--+. ..+. +||++.|.++-..
T Consensus 139 Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQ 187 (390)
T 1deq_A 139 LQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQ 187 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHH
Confidence 3344445555555555555332221 1111 3677777766554
No 61
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Probab=83.33 E-value=3.3 Score=32.81 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=43.3
Q ss_pred CChhHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 047127 255 IDAESKAELEGSAADEAIEDVIYALDKALERGVVSFDSYIRQVRILA 301 (322)
Q Consensus 255 ~~~l~~QLlel~Aed~AieDtIy~L~~aL~~g~I~ld~flK~vR~La 301 (322)
.++..+..||-.|+-.||==|+.+|.+|+-++.|+-+.|-..+..|=
T Consensus 20 ~~~~eRe~ye~LAelYSII~tle~LEkAyikD~It~~eYt~~c~rLL 66 (109)
T 2f6m_B 20 ITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLL 66 (109)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999988777664
No 62
>2p22_B Vacuolar protein sorting-associated protein 28; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=82.63 E-value=3.3 Score=33.20 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=43.5
Q ss_pred CChhHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 047127 255 IDAESKAELEGSAADEAIEDVIYALDKALERGVVSFDSYIRQVRILA 301 (322)
Q Consensus 255 ~~~l~~QLlel~Aed~AieDtIy~L~~aL~~g~I~ld~flK~vR~La 301 (322)
.++..+..||-+|+-.||==|+.+|.+|+-++.|+-+.|-..+..|=
T Consensus 29 ~~~~eRe~ye~LAeLYSII~tle~LEKAyikD~It~~eYt~~C~rLL 75 (118)
T 2p22_B 29 ITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLL 75 (118)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999988877664
No 63
>2caz_B Vacuolar protein sorting-associated protein VPS28; protein transport, ESCRT, MVB, multivesicular bodies, endosome, lysosome, PH domain, protein sorting; 3.6A {Saccharomyces cerevisiae} SCOP: a.2.17.2
Probab=80.35 E-value=4.1 Score=34.16 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=43.0
Q ss_pred CChhHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 047127 255 IDAESKAELEGSAADEAIEDVIYALDKALERGVVSFDSYIRQVRILA 301 (322)
Q Consensus 255 ~~~l~~QLlel~Aed~AieDtIy~L~~aL~~g~I~ld~flK~vR~La 301 (322)
.++..+.+||-+|+-.||==|+.+|.+|+-++.|+-++|-..+..|=
T Consensus 37 ~s~~ERe~yE~LAeLYSII~tLE~LEKAYikD~It~~eYT~aC~rLL 83 (155)
T 2caz_B 37 ITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLL 83 (155)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999987776653
No 64
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=79.24 E-value=11 Score=25.25 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Q 047127 193 EEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNG 235 (322)
Q Consensus 193 ~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~ 235 (322)
+..+.+|...+..|..+...|+..-++.+.++.+|...++++.
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkqHg 45 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQNG 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcC
Confidence 4467778888888888888888888888899999999888764
No 65
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=77.20 E-value=3.6 Score=35.63 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=40.2
Q ss_pred eeEEEeecccCCCCCCEEEEecCCCCCcccCCCCccCCCCceeccccccccCCCCCHHHHHHHHHHhhccCCCCC
Q 047127 80 IHFTLWLHENYPSMAPMAFIVSSNSMYPIRQNHPFVSPCGTITTPYLQTWSYPGYNLNDLVHNLVQIFSHDHPLI 154 (322)
Q Consensus 80 iPi~Iwlp~~yP~~pP~v~v~~pt~~m~I~~~h~~Vd~~G~v~~pyL~~W~~~~s~L~~lv~~l~~~f~~~pPl~ 154 (322)
.-+.|-++..||.++|.|.+++|.+- --+|.. .++|.++++........--+++
T Consensus 40 H~l~v~l~~~yp~~~P~~~~DlP~~~--------------------~~~w~~-~ssL~~v~~qF~~~Le~lq~Fw 93 (186)
T 3zqs_A 40 HLITLKLKAKYPAESPDYFVDFPVPF--------------------CASWTP-QSSLISIYSQFLAAIESLKAFW 93 (186)
T ss_dssp EEEEEECCTTTTTSCCEEECCCSSCC--------------------CCCCCT-TCCHHHHHHHHHHHHHHTHHHH
T ss_pred EEEEEEECCCCCCCCCeeEEcCCCCc--------------------ccccCC-CccHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999977421 137885 6889888887766655444444
No 66
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=73.53 E-value=2.6 Score=33.46 Aligned_cols=22 Identities=23% Similarity=0.316 Sum_probs=19.4
Q ss_pred CeeEEEeecccCCCCCCEEEEe
Q 047127 79 PIHFTLWLHENYPSMAPMAFIV 100 (322)
Q Consensus 79 ~iPi~Iwlp~~yP~~pP~v~v~ 100 (322)
.+-+.|.+|.+||..+|.+++.
T Consensus 60 ~~~L~~~~p~~YP~~~P~i~~~ 81 (128)
T 2day_A 60 CFTLVLQVPAEYPHEVPQISIR 81 (128)
T ss_dssp EEEEEEEECSSTTSSCCEEEEE
T ss_pred eEEEEEEcCCCCCCCCCCeEEE
Confidence 3557799999999999999998
No 67
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=73.37 E-value=3.4 Score=33.27 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.8
Q ss_pred CeeEEEeecccCCCCCCEEEEe
Q 047127 79 PIHFTLWLHENYPSMAPMAFIV 100 (322)
Q Consensus 79 ~iPi~Iwlp~~yP~~pP~v~v~ 100 (322)
.+=+.|.+|.+||..||.+.|.
T Consensus 63 ~~~L~~~~p~~YP~~~P~i~l~ 84 (138)
T 2yz0_A 63 SITLHFAMTPMYPYTAPEIEFK 84 (138)
T ss_dssp EEEEEEECCSSTTSSCCEEEEE
T ss_pred EEEEEEECCCCCCCCCCeEEEe
Confidence 4668889999999999999997
No 68
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=72.31 E-value=13 Score=34.41 Aligned_cols=39 Identities=15% Similarity=0.328 Sum_probs=2.1
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 047127 260 KAELEGSAADEAIEDVIYALDKALERGVVSFDSYIRQVRIL 300 (322)
Q Consensus 260 ~QLlel~Aed~AieDtIy~L~~aL~~g~I~ld~flK~vR~L 300 (322)
+.-|+.+.-+-.+++ +.-|-.-|++. =+|-.|||.+|+.
T Consensus 270 ~~~Y~v~~c~P~l~~-~~~l~~~lN~~-~d~~~Fl~~~R~~ 308 (315)
T 2ve7_A 270 ARDYEVSDSAPHLEG-LAEFQENVRKT-NNFSAFLANVRKA 308 (315)
T ss_dssp --------------------------------------CHH
T ss_pred CCceEEEecCCCCcc-HHHHHHHHhcc-CCHHHHHHHHHHH
Confidence 577888888888887 66666666654 3799999999865
No 69
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=71.64 E-value=3.4 Score=34.29 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=20.6
Q ss_pred CeeEEEeecccCCCCCCEEEEe
Q 047127 79 PIHFTLWLHENYPSMAPMAFIV 100 (322)
Q Consensus 79 ~iPi~Iwlp~~yP~~pP~v~v~ 100 (322)
.+-+.|.+|.+||..+|.+.|.
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~ 97 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGR 97 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEE
T ss_pred eEEEEEEcCCCCCCCCCcEEEE
Confidence 4889999999999999999998
No 70
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=71.53 E-value=29 Score=25.86 Aligned_cols=60 Identities=12% Similarity=0.157 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 047127 172 EALDRFSGMLHYDMGALQARTEEETEAL-------LTIQVELKNRARKLKETVVELAGKADVLTNWLK 232 (322)
Q Consensus 172 ~l~~~~~~~L~~~l~~~~~~~~~e~~~L-------~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~ 232 (322)
++++.++.|+...+.. ..-.+.+++.| ..-.++++.+.+.|+++...|..+...-+..++
T Consensus 6 ElleqLE~KIq~avdt-I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDT-ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666654432 12223344444 333445555556666676666654444444433
No 71
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.82 E-value=3.1 Score=32.95 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.7
Q ss_pred CeeEEEeecccCCCCCCEEEEe
Q 047127 79 PIHFTLWLHENYPSMAPMAFIV 100 (322)
Q Consensus 79 ~iPi~Iwlp~~yP~~pP~v~v~ 100 (322)
.+=+.|.+|.+||..||.+.+.
T Consensus 56 ~~~L~v~~p~~YP~~~P~i~l~ 77 (128)
T 2ebm_A 56 QTTLKFTYSEKYPDEAPLYEIF 77 (128)
T ss_dssp BEEEEEECCSSTTTSCCEEEEE
T ss_pred eEEEEEEeCCCCCCCCceEEEE
Confidence 4668999999999999999887
No 72
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=68.71 E-value=17 Score=25.06 Aligned_cols=45 Identities=22% Similarity=0.340 Sum_probs=35.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Q 047127 191 RTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNG 235 (322)
Q Consensus 191 ~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~ 235 (322)
+++..+..|.+++.+|..--+.||..-++.+.++++|...+++..
T Consensus 8 Rse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqHg 52 (58)
T 3a2a_A 8 RSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQHG 52 (58)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455677888888888888888899888999999999999988764
No 73
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=66.99 E-value=15 Score=36.57 Aligned_cols=43 Identities=16% Similarity=0.030 Sum_probs=22.8
Q ss_pred hHHHHHHhhhhhhhhHHHHHHHHHHHhcC-------CCCHHHHHHHHHHH
Q 047127 258 ESKAELEGSAADEAIEDVIYALDKALERG-------VVSFDSYIRQVRIL 300 (322)
Q Consensus 258 l~~QLlel~Aed~AieDtIy~L~~aL~~g-------~I~ld~flK~vR~L 300 (322)
|.+.|=+++.|.+-+|=.|.+==+.=+.- .||++.|.-.=++|
T Consensus 136 LQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQL 185 (562)
T 3ghg_A 136 LQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQL 185 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHH
Confidence 33444455555555555554443333221 47888887665554
No 74
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=65.82 E-value=19 Score=23.61 Aligned_cols=33 Identities=18% Similarity=0.374 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 047127 201 TIQVELKNRARKLKETVVELAGKADVLTNWLKV 233 (322)
Q Consensus 201 ~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e 233 (322)
.+..+|..+.+.||.++..|+.+.+.|.+.++.
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345566667777777777777777777766543
No 75
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=64.29 E-value=26 Score=22.89 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 047127 195 ETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLK 232 (322)
Q Consensus 195 e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~ 232 (322)
.+..|..-+-+|.+-+++||..+..|..++.+|++.+.
T Consensus 11 kiarlkkdnlqlerdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 11 KIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 34445555556666677788888888877777776654
No 76
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=60.85 E-value=31 Score=22.30 Aligned_cols=43 Identities=21% Similarity=0.192 Sum_probs=22.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 047127 189 QARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWL 231 (322)
Q Consensus 189 ~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~ 231 (322)
.++.++|..+|..-+.-|++..-.-++.+..|+.++..|+..+
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 3455556666555554444332222445566666666665554
No 77
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=60.23 E-value=4.1 Score=32.63 Aligned_cols=22 Identities=14% Similarity=0.301 Sum_probs=19.5
Q ss_pred CeeEEEeecccCCCCCCEEEEe
Q 047127 79 PIHFTLWLHENYPSMAPMAFIV 100 (322)
Q Consensus 79 ~iPi~Iwlp~~yP~~pP~v~v~ 100 (322)
.+=+.|.+|.+||..+|.+++.
T Consensus 64 ~~~L~v~~p~~YP~~~P~i~l~ 85 (137)
T 1ukx_A 64 QVELRVKCPPTYPDVVPEIDLK 85 (137)
T ss_dssp EEEEEECCCTTTTSSCCCCEEE
T ss_pred EEEEEEECCCCCCCCCCcEEEe
Confidence 4678899999999999999995
No 78
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=60.00 E-value=5.2 Score=32.82 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.9
Q ss_pred CeeEEEeecccCCCCCCEEEEe
Q 047127 79 PIHFTLWLHENYPSMAPMAFIV 100 (322)
Q Consensus 79 ~iPi~Iwlp~~yP~~pP~v~v~ 100 (322)
.|-+.|.+|.+||..||.+.|.
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~ 95 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVR 95 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEE
T ss_pred eEEEEEECCCCCCCCCCeEEEE
Confidence 3678899999999999999998
No 79
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=58.12 E-value=45 Score=23.31 Aligned_cols=45 Identities=27% Similarity=0.313 Sum_probs=29.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 047127 189 QARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKV 233 (322)
Q Consensus 189 ~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e 233 (322)
+....++.+.|..--.+|...-..|+.+++.|..++..|++.+.+
T Consensus 18 R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 18 RQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555556665555566666666777777777777777776654
No 80
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=57.58 E-value=46 Score=23.27 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=23.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 047127 186 GALQARTEEETEALLTIQVELKNRARKLKETVVELAGKADVL 227 (322)
Q Consensus 186 ~~~~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L 227 (322)
...++.+++.++.|-..+..|..--..|.++++.|+++...|
T Consensus 19 K~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 19 KKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 334556677777776666555444444555666665544444
No 81
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.75 E-value=4.6 Score=32.05 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.1
Q ss_pred CeeEEEeecccCCCCCCEEEEe
Q 047127 79 PIHFTLWLHENYPSMAPMAFIV 100 (322)
Q Consensus 79 ~iPi~Iwlp~~yP~~pP~v~v~ 100 (322)
.+=+.|.+|.+||..||.+.|.
T Consensus 57 ~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 57 PLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp EEEEEEEECSSTTSSCCCCCCC
T ss_pred EEEEEEECCCCCCCCCCeEEEE
Confidence 4678899999999999988876
No 82
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=52.16 E-value=22 Score=30.31 Aligned_cols=59 Identities=10% Similarity=0.020 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCc
Q 047127 179 GMLHYDMGALQARTE-EETEALLTIQV----ELKNRARKLKETVVELAGKADVLTNWLKVNGDP 237 (322)
Q Consensus 179 ~~L~~~l~~~~~~~~-~e~~~L~~~q~----~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~~ 237 (322)
++|+..+.++..+.. ..++.+.+.|. .|+++++.|+...+.|+...+.|++..+.++..
T Consensus 15 ~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~ 78 (174)
T 2p22_A 15 QNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQ 78 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554444 33355544443 346666777777766666666666655555444
No 83
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=51.18 E-value=47 Score=27.53 Aligned_cols=37 Identities=19% Similarity=0.090 Sum_probs=11.1
Q ss_pred CccCCCCceeccccccccCC-CCCHHHHHHHHHHhhccC
Q 047127 113 PFVSPCGTITTPYLQTWSYP-GYNLNDLVHNLVQIFSHD 150 (322)
Q Consensus 113 ~~Vd~~G~v~~pyL~~W~~~-~s~L~~lv~~l~~~f~~~ 150 (322)
.|-.+||+- .|||..=.+| ...|..+++.|...++.+
T Consensus 4 ~~~~~~~~~-~~~~~~~~p~~~~elik~L~~le~sassD 41 (152)
T 4fla_A 4 HHHHSSGRE-NLYFQGAGPLLTEELIKALQDLENAASGD 41 (152)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCC-CCCCCCCCCCCHHHHHHHHHHhhccccch
Confidence 344567763 5888877764 336677777776665544
No 84
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=49.48 E-value=35 Score=33.40 Aligned_cols=19 Identities=16% Similarity=0.524 Sum_probs=10.7
Q ss_pred cccc---CCCCCHHHHHHHHHH
Q 047127 127 QTWS---YPGYNLNDLVHNLVQ 145 (322)
Q Consensus 127 ~~W~---~~~s~L~~lv~~l~~ 145 (322)
.+|. +.+|.|.+++..-..
T Consensus 40 eDwGvkCPSGCrLqglL~kqer 61 (491)
T 1m1j_A 40 DDWGTKCPSGCRMQGIIDDTDQ 61 (491)
T ss_dssp TSTTTEECCSTTHHHHHHHHHH
T ss_pred ccccCCCCCccchhhHHHHhhh
Confidence 4666 346677766654433
No 85
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=48.23 E-value=93 Score=24.02 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCccccccccCCCcccccccCChhHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCH
Q 047127 211 RKLKETVVELAGKADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAADEAIEDVIYALDKALERGVVSF 290 (322)
Q Consensus 211 ~~Le~~~~~l~~~~~~L~~~~~e~~~~~~~~~~~~~dide~v~~~~~l~~QLlel~Aed~AieDtIy~L~~aL~~g~I~l 290 (322)
.+|...-..|+.++..|+..++. . |-|. ++--.+-|.++.+|-.++.|-|..+=.--+.....+
T Consensus 9 ~KLR~La~tLe~Eta~L~~al~~---e---------dsd~----E~~~~rilhdl~seV~~LK~dv~~~L~k~~~e~qe~ 72 (101)
T 4aj5_1 9 GKLRSLASTLDCETARLQRALDG---E---------ESDF----EDYPMRILYDLHSEVQTLKDDINILLDKARLENQEG 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---C---------SSHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---c---------cccc----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34455555555566666555432 1 1111 233457789999999999988876655555666799
Q ss_pred HHHHHHHHHHHHHH
Q 047127 291 DSYIRQVRILAREQ 304 (322)
Q Consensus 291 d~flK~vR~LaReQ 304 (322)
..|+|.++.|...-
T Consensus 73 ~~FIKa~kvL~~rn 86 (101)
T 4aj5_1 73 IDFIKATKVLMEKN 86 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887653
No 86
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.65 E-value=70 Score=23.23 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=12.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHcCC
Q 047127 213 LKETVVELAGKADVLTNWLKVNGD 236 (322)
Q Consensus 213 Le~~~~~l~~~~~~L~~~~~e~~~ 236 (322)
|+.++++.+..+..|+..+++..+
T Consensus 45 LEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 45 LELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444555555555555555555543
No 87
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=44.63 E-value=84 Score=27.77 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHH
Q 047127 212 KLKETVVELAGKADVLTNWLK 232 (322)
Q Consensus 212 ~Le~~~~~l~~~~~~L~~~~~ 232 (322)
.++..+..+...+...++.+.
T Consensus 64 ~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 64 KNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 88
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=44.53 E-value=53 Score=24.41 Aligned_cols=17 Identities=12% Similarity=0.218 Sum_probs=8.6
Q ss_pred HHHHHhHHHHHHHHHHH
Q 047127 217 VVELAGKADVLTNWLKV 233 (322)
Q Consensus 217 ~~~l~~~~~~L~~~~~e 233 (322)
-.+|..++..++..+++
T Consensus 54 n~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 54 NRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455555555554
No 89
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=43.89 E-value=62 Score=20.77 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 047127 212 KLKETVVELAGKADVLTNWLKV 233 (322)
Q Consensus 212 ~Le~~~~~l~~~~~~L~~~~~e 233 (322)
.||++.+.++.....|+..++.
T Consensus 24 aleselqalekklaalksklqa 45 (48)
T 1g6u_A 24 ALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555443
No 90
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=43.71 E-value=64 Score=20.90 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 047127 202 IQVELKNRARKLKETVVELAGKADVLTNWL 231 (322)
Q Consensus 202 ~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~ 231 (322)
.-.+|..+-..||..++.|+.+...|++.+
T Consensus 11 r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 11 RVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 333444444556677777776666666554
No 91
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=42.72 E-value=1.2e+02 Score=24.56 Aligned_cols=8 Identities=25% Similarity=0.273 Sum_probs=4.9
Q ss_pred cCCCCcee
Q 047127 115 VSPCGTIT 122 (322)
Q Consensus 115 Vd~~G~v~ 122 (322)
|.-.|+.|
T Consensus 12 V~I~Gk~Y 19 (138)
T 3hnw_A 12 VILGGKVI 19 (138)
T ss_dssp EEETTEEE
T ss_pred EEECCEEE
Confidence 55567666
No 92
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=39.58 E-value=1.2e+02 Score=23.03 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=16.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHcCC
Q 047127 213 LKETVVELAGKADVLTNWLKVNGD 236 (322)
Q Consensus 213 Le~~~~~l~~~~~~L~~~~~e~~~ 236 (322)
....+..|..+...++.|+.+++.
T Consensus 67 ~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 67 TLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566667777788888877754
No 93
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=38.80 E-value=1.2e+02 Score=22.51 Aligned_cols=18 Identities=17% Similarity=0.219 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 047127 211 RKLKETVVELAGKADVLT 228 (322)
Q Consensus 211 ~~Le~~~~~l~~~~~~L~ 228 (322)
..|.++.+++.++.+.|.
T Consensus 37 ~~L~~e~~e~~~~~~~L~ 54 (81)
T 2jee_A 37 NSLSQEVQNAQHQREELE 54 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHH
Confidence 444455544444333333
No 94
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=34.91 E-value=1.5e+02 Score=22.52 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhHHHHHH
Q 047127 212 KLKETVVELAGKADVLT 228 (322)
Q Consensus 212 ~Le~~~~~l~~~~~~L~ 228 (322)
+.+.++..|+..+..+.
T Consensus 41 ~~E~Ei~sL~kk~~~lE 57 (101)
T 3u1c_A 41 QLEDDIVQLEKQLRVTE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 34444444444333333
No 95
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=33.81 E-value=1.6e+02 Score=22.62 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCC
Q 047127 211 RKLKETVVELAGKADVLTNWLKVNGD 236 (322)
Q Consensus 211 ~~Le~~~~~l~~~~~~L~~~~~e~~~ 236 (322)
+..+..+..|+..++.|+..+..+++
T Consensus 71 ~~~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 71 QRLREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677788888888888888876654
No 96
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=32.33 E-value=1.4e+02 Score=21.55 Aligned_cols=6 Identities=17% Similarity=0.091 Sum_probs=2.2
Q ss_pred HHHHHH
Q 047127 182 HYDMGA 187 (322)
Q Consensus 182 ~~~l~~ 187 (322)
+.++..
T Consensus 5 kkKm~~ 10 (81)
T 1ic2_A 5 KKKMQM 10 (81)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 97
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.92 E-value=83 Score=30.11 Aligned_cols=21 Identities=14% Similarity=-0.024 Sum_probs=8.9
Q ss_pred HHHHHhHHHHHHHHHHHcCCc
Q 047127 217 VVELAGKADVLTNWLKVNGDP 237 (322)
Q Consensus 217 ~~~l~~~~~~L~~~~~e~~~~ 237 (322)
++.+.++.++++..+++++..
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 444 ETQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhh
Confidence 333344444444444444433
No 98
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.17 E-value=1.5e+02 Score=29.49 Aligned_cols=14 Identities=21% Similarity=-0.009 Sum_probs=9.7
Q ss_pred hhHHHHHHhhhhhh
Q 047127 257 AESKAELEGSAADE 270 (322)
Q Consensus 257 ~l~~QLlel~Aed~ 270 (322)
-+.+||..+.|.|.
T Consensus 180 ~~QKQLeQv~a~dL 193 (562)
T 3ghg_A 180 DQQKQLEQVIAKDL 193 (562)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhccc
Confidence 35677777777665
No 99
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=29.81 E-value=73 Score=20.75 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 047127 197 EALLTIQVELKNRARKLKETVVELAGKAD 225 (322)
Q Consensus 197 ~~L~~~q~~L~~~~~~Le~~~~~l~~~~~ 225 (322)
..++.-+.+|.+|-..||.++..|.+...
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677788888888888887776554
No 100
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=28.29 E-value=1e+02 Score=27.37 Aligned_cols=9 Identities=11% Similarity=0.383 Sum_probs=6.3
Q ss_pred HHHHHHHHh
Q 047127 35 KQLLSLLQN 43 (322)
Q Consensus 35 ~dv~~~l~~ 43 (322)
.|++..|+.
T Consensus 17 ~eIv~~L~~ 25 (250)
T 2ve7_C 17 AEIVIHIRN 25 (250)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 677777774
No 101
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=26.87 E-value=2.7e+02 Score=30.13 Aligned_cols=9 Identities=11% Similarity=0.460 Sum_probs=4.8
Q ss_pred HHHHHHHHh
Q 047127 35 KQLLSLLQN 43 (322)
Q Consensus 35 ~dv~~~l~~ 43 (322)
.|+..+|+.
T Consensus 574 ~~~~~ll~~ 582 (1080)
T 2dfs_A 574 EEQIKVLKS 582 (1080)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 355555543
No 102
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=26.62 E-value=1.6e+02 Score=25.74 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=17.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047127 183 YDMGALQARTEEETEALLTIQVELKNRARKLKETVVE 219 (322)
Q Consensus 183 ~~l~~~~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~ 219 (322)
..+.++.++..+.-+.+.+.+.+..+.+...++++..
T Consensus 66 ~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~ 102 (213)
T 4ani_A 66 AQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEA 102 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333345555566655555444444443
No 103
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=26.48 E-value=2.3e+02 Score=22.12 Aligned_cols=24 Identities=8% Similarity=0.188 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHcC
Q 047127 212 KLKETVVELAGKADVLTNWLKVNG 235 (322)
Q Consensus 212 ~Le~~~~~l~~~~~~L~~~~~e~~ 235 (322)
.|+.++..|....+.+...+++++
T Consensus 39 ~Lq~El~~lr~~~~~l~~~iReLE 62 (111)
T 2v66_B 39 VLEDDLSQTRAIKEQLHKYVRELE 62 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 104
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=26.19 E-value=2.6e+02 Score=22.52 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=8.2
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 047127 214 KETVVELAGKADVLTNWLKV 233 (322)
Q Consensus 214 e~~~~~l~~~~~~L~~~~~e 233 (322)
+.++.++...+..|+..+.+
T Consensus 109 ~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 109 AKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 105
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=25.71 E-value=77 Score=30.43 Aligned_cols=64 Identities=6% Similarity=-0.038 Sum_probs=33.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHcCCccccccccCCCcccccccCChhHHHHHHhhhhhhhhHHHHHHHHHHH
Q 047127 213 LKETVVELAGKADVLTNWLKVNGDPKAIGVILGDRVEDAFEAIDAESKAELEGSAADEAIEDVIYALDKAL 283 (322)
Q Consensus 213 Le~~~~~l~~~~~~L~~~~~e~~~~~~~~~~~~~dide~v~~~~~l~~QLlel~Aed~AieDtIy~L~~aL 283 (322)
+..+..+|+++...+++.+.+. ...+++.++++.....+..++=++-++-.++++.+..+-..+
T Consensus 42 ~~~~~~~l~~~~n~~sk~i~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 105 (425)
T 2dq3_A 42 IIKRLEALRSERNKLSKEIGKL-------KREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWI 105 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHTTGG-------GSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------hhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444444444444444444332 112335556655555666666666666666666666555443
No 106
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=25.63 E-value=1.8e+02 Score=20.53 Aligned_cols=18 Identities=22% Similarity=0.171 Sum_probs=8.2
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 047127 214 KETVVELAGKADVLTNWL 231 (322)
Q Consensus 214 e~~~~~l~~~~~~L~~~~ 231 (322)
+.++.++...+..|+..+
T Consensus 55 k~Ei~elrr~iq~L~~el 72 (77)
T 3trt_A 55 KQESTEYRRQVQSLTMEV 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 107
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=25.42 E-value=2e+02 Score=27.33 Aligned_cols=19 Identities=16% Similarity=0.504 Sum_probs=10.1
Q ss_pred cccccC---CCCCHHHHHHHHH
Q 047127 126 LQTWSY---PGYNLNDLVHNLV 144 (322)
Q Consensus 126 L~~W~~---~~s~L~~lv~~l~ 144 (322)
=.+|.. ..|.|.++|..-.
T Consensus 41 DeDwG~kCPsGCrLqg~Ldk~e 62 (390)
T 1deq_A 41 DEDWNTKCPSGCRMKGLIDEVD 62 (390)
T ss_pred hhhccCCCCccchHHHHHHHhh
Confidence 346663 3566666655443
No 108
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=24.49 E-value=3.3e+02 Score=23.23 Aligned_cols=27 Identities=7% Similarity=0.180 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCc
Q 047127 211 RKLKETVVELAGKADVLTNWLKVNGDP 237 (322)
Q Consensus 211 ~~Le~~~~~l~~~~~~L~~~~~e~~~~ 237 (322)
..|+.+++.+....+.|+..+.+++..
T Consensus 91 ~~Lq~el~~l~~~~~~l~~~ireLEq~ 117 (189)
T 2v71_A 91 SVLEDDLSQTRAIKEQLHKYVRELEQA 117 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666665555443
No 109
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=24.33 E-value=1.8e+02 Score=23.26 Aligned_cols=35 Identities=6% Similarity=0.049 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcc
Q 047127 204 VELKNRARKLKETVVELAGKADVLTNWLKVNGDPK 238 (322)
Q Consensus 204 ~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~~~ 238 (322)
.-|.+..+.|++++.+|+...+.|...++..++.+
T Consensus 98 ~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 132 (148)
T 3gpv_A 98 KLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEI 132 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556677777777777777777777666553
No 110
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=23.44 E-value=51 Score=24.90 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=23.1
Q ss_pred hhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 047127 269 DEAIEDVIYALDKALERGVVSFDSYIRQVRILARE 303 (322)
Q Consensus 269 d~AieDtIy~L~~aL~~g~I~ld~flK~vR~LaRe 303 (322)
+..+++.|..++.- ..|.|++++|+.-+..++-.
T Consensus 52 ~~ev~~~i~~~D~d-gDG~Idf~EF~~~~~~~~~~ 85 (101)
T 3nso_A 52 ECDYNKFMSVLDTN-KDCEVDFVEYVRSLACLCLY 85 (101)
T ss_dssp HHHHHHHHHHHHHC-CCSCEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CCCCCcHHHHHHHHHHHHHH
Confidence 34455555555432 46799999999988877653
No 111
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=23.34 E-value=2.8e+02 Score=22.03 Aligned_cols=37 Identities=11% Similarity=0.050 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 047127 194 EETEALLTIQVELKNRARKLKETVVELAGKADVLTNW 230 (322)
Q Consensus 194 ~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~ 230 (322)
+..+++..++.+++...+.+++.+.+-+.-...+++.
T Consensus 89 ~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 125 (132)
T 1ykh_B 89 EQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 125 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666555555555555444333333333
No 112
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=22.64 E-value=76 Score=29.23 Aligned_cols=11 Identities=36% Similarity=0.537 Sum_probs=8.3
Q ss_pred hhhhhHHHHHH
Q 047127 268 ADEAIEDVIYA 278 (322)
Q Consensus 268 ed~AieDtIy~ 278 (322)
+|=+|+|+-|+
T Consensus 130 DDI~ieDApyf 140 (302)
T 3ibp_A 130 DDVSLEDAPYF 140 (302)
T ss_dssp TTCCTTTHHHH
T ss_pred cCCChhhHHHH
Confidence 56688888875
No 113
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.61 E-value=3.2e+02 Score=22.34 Aligned_cols=43 Identities=12% Similarity=0.037 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC
Q 047127 194 EETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNGD 236 (322)
Q Consensus 194 ~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~~ 236 (322)
+..+++..++.+++...+.+++.+.+-+.-.+.+++.+.....
T Consensus 89 eQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~ 131 (151)
T 1yke_B 89 EQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVD 131 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777666777666666555666666655544
No 114
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=22.49 E-value=2.8e+02 Score=21.66 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q 047127 211 RKLKETVVELAGKADVLTNWLKV 233 (322)
Q Consensus 211 ~~Le~~~~~l~~~~~~L~~~~~e 233 (322)
+++.+++.+|..++..|+..+++
T Consensus 86 Ekl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 86 EKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHh
Confidence 66778888888777777666543
No 115
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=22.39 E-value=1.3e+02 Score=24.14 Aligned_cols=46 Identities=15% Similarity=0.087 Sum_probs=35.4
Q ss_pred hHHHHHHhhhhhhhhHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHH
Q 047127 258 ESKAELEGSAADEAIEDVIYALDKALE----RGVVSFDSYIRQVRILARE 303 (322)
Q Consensus 258 l~~QLlel~Aed~AieDtIy~L~~aL~----~g~I~ld~flK~vR~LaRe 303 (322)
+.+|.-.+.++...++.++..|+..+. ...++++.|.+-.|.++-+
T Consensus 85 L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~Li~~~~~~ 134 (146)
T 3hh0_A 85 MHFQREVLLAEQERIAKVLSHMDEMTKKFQKEERVNVALFSSFLQTFIWE 134 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHc
Confidence 556777777778888888888877775 3468999999999988754
No 116
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=22.38 E-value=2.5e+02 Score=21.07 Aligned_cols=6 Identities=17% Similarity=0.091 Sum_probs=2.2
Q ss_pred HHHHHH
Q 047127 182 HYDMGA 187 (322)
Q Consensus 182 ~~~l~~ 187 (322)
+.++..
T Consensus 8 KkKm~~ 13 (101)
T 3u59_A 8 KKKMQM 13 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 117
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Probab=22.19 E-value=51 Score=24.23 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 047127 271 AIEDVIYALDKALERGVVSFDSYIRQVRILARE 303 (322)
Q Consensus 271 AieDtIy~L~~aL~~g~I~ld~flK~vR~LaRe 303 (322)
-+++.|..++.- ..|.|++++|++-++.++..
T Consensus 54 ev~~~i~~~D~d-~DG~Idf~EF~~~~~~~~~~ 85 (93)
T 4eto_A 54 AFQKLMSNLDSN-RDNEVDFQEYCVFLSCIAMM 85 (93)
T ss_dssp HHHHHHHHHCTT-SSSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCCCCcHHHHHHHHHHHHHH
Confidence 344444443322 45789999999988887654
No 118
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens}
Probab=21.95 E-value=66 Score=24.33 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 047127 270 EAIEDVIYALDKALERGVVSFDSYIRQVRILAREQ 304 (322)
Q Consensus 270 ~AieDtIy~L~~aL~~g~I~ld~flK~vR~LaReQ 304 (322)
..+++.|..++.- ..|.|++++|++.+..++...
T Consensus 56 ~ev~~~i~~~D~d-gDG~Idf~EF~~~m~~~~~~~ 89 (104)
T 3zwh_A 56 AAFQKLMSNLDSN-RDNEVDFQEYCVFLSSIAMMS 89 (104)
T ss_dssp HHHHHHHHHHCTT-CSSSBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CCCCCcHHHHHHHHHHHHHHH
Confidence 3344444444332 467899999999888876543
No 119
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=21.24 E-value=2.3e+02 Score=20.53 Aligned_cols=8 Identities=13% Similarity=-0.072 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 047127 138 DLVHNLVQ 145 (322)
Q Consensus 138 ~lv~~l~~ 145 (322)
+.+..|.+
T Consensus 18 ~~f~~Lr~ 25 (80)
T 1nlw_A 18 LSLEKLKG 25 (80)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33334443
No 120
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=20.82 E-value=56 Score=24.33 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 047127 270 EAIEDVIYALDKALERGVVSFDSYIRQVRILARE 303 (322)
Q Consensus 270 ~AieDtIy~L~~aL~~g~I~ld~flK~vR~LaRe 303 (322)
..+++.|..++.- ..|.|++++|++-++.++..
T Consensus 54 ~ev~~~i~~~D~d-~DG~Idf~EF~~~~~~~~~~ 86 (98)
T 3n22_A 54 EGLKKLMGSLDEN-SDQQVDFQEYAVFLALITVM 86 (98)
T ss_dssp HHHHHHHHHHCTT-SSSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CCCCCcHHHHHHHHHHHHHH
Confidence 3344444444332 45789999999988877653
No 121
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=20.79 E-value=54 Score=21.99 Aligned_cols=13 Identities=8% Similarity=0.082 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHH
Q 047127 299 ILAREQFFHRDLL 311 (322)
Q Consensus 299 ~LaReQF~~Rali 311 (322)
+++|.|||...++
T Consensus 8 dm~RRqfln~l~~ 20 (49)
T 1q90_R 8 DMNKRNIMNLILA 20 (49)
T ss_dssp CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 4789999999886
No 122
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=20.49 E-value=2.5e+02 Score=20.26 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Q 047127 172 EALDRFSGMLHYDMGALQARTEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNWLKVNG 235 (322)
Q Consensus 172 ~l~~~~~~~L~~~l~~~~~~~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~~~e~~ 235 (322)
+++......|++.+.+ ...||..|...-.-=.+.-+.|.+++-.+.-+...|++++..+.
T Consensus 14 ~~~~~~l~~Lr~eL~~----Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 14 DALLNTLAILQKELKS----KEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 3444433444444432 34455444333222222337788888888888888888876553
No 123
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.37 E-value=3.8e+02 Score=25.28 Aligned_cols=17 Identities=12% Similarity=-0.091 Sum_probs=6.6
Q ss_pred HHHHHHHHHhHHHHHHH
Q 047127 213 LKETVVELAGKADVLTN 229 (322)
Q Consensus 213 Le~~~~~l~~~~~~L~~ 229 (322)
.++......+.++.+++
T Consensus 433 ~~~~~~~~~~~~~~~~~ 449 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAE 449 (487)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHH
Confidence 33333333334444443
No 124
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.32 E-value=1.8e+02 Score=20.93 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=10.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHc
Q 047127 213 LKETVVELAGKADVLTNWLKVN 234 (322)
Q Consensus 213 Le~~~~~l~~~~~~L~~~~~e~ 234 (322)
|+.++..|..+...|...+..+
T Consensus 59 l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 59 HQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444455555554443
No 125
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=20.06 E-value=2.1e+02 Score=19.36 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 047127 192 TEEETEALLTIQVELKNRARKLKETVVELAGKADVLTNW 230 (322)
Q Consensus 192 ~~~e~~~L~~~q~~L~~~~~~Le~~~~~l~~~~~~L~~~ 230 (322)
....++.|..--..|......|..+++.|..++..|+..
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444433344444444555556665555555443
No 126
>2q07_A Uncharacterized protein AF0587; monomer, structural genomics, PSI-2, protein structure initiative; 2.04A {Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1 c.18.1.4 d.17.6.5
Probab=20.03 E-value=97 Score=28.48 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 047127 271 AIEDVIYALDKALERGVVSFDSYIRQVRILAREQF 305 (322)
Q Consensus 271 AieDtIy~L~~aL~~g~I~ld~flK~vR~LaReQF 305 (322)
...+.+..|.++|+... .++..+..+|.+++.||
T Consensus 148 ~~~~sl~~l~~~l~~~~-~~~~d~~~ir~i~~yqF 181 (306)
T 2q07_A 148 LSDESIERLKQEIESKG-KVDLYRRILEHMLSYQF 181 (306)
T ss_dssp TSHHHHHHHHHHHCCSS-CCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhhcc-ccHHHHHHHHHHHHHHc
Confidence 44689999999999654 57789999999999999
Done!