BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047128
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 120/283 (42%), Gaps = 28/283 (9%)
Query: 6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK 65
+L L L N L+ +I L NCT L + + N G IP WIG R + +L L +N
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNS 525
Query: 66 FHGPLPTRLCDLPFLQILDIADTNLSGAIPN--------------------WINNLTGMV 105
F G +P L D L LD+ +G IP +I N GM
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN-DGMK 584
Query: 106 TSCSFTRSVQQYLPLPIDVGVILVEK-----ASVVSKGEMVDYEDILNLVRMIDISRNNF 160
C ++ ++ + + L + S V G D + +D+S N
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644
Query: 161 SGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMXXXX 220
SG IP E+ ++ L LN +N + IP+ +G + L +D S+N+L G IP++M
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704
Query: 221 XXXXXXXXXXXXTGKIPSSTQLQSFDVSSFAGN-DLCGAPIPK 262
+G IP Q ++F + F N LCG P+P+
Sbjct: 705 MLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 132/298 (44%), Gaps = 44/298 (14%)
Query: 1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
+G ++L L + NKLS D ++ CT L+ L++ N+FVG IP + L
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLS 275
Query: 61 LRSNKFHGPLPTRL---CDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQY 117
L NKF G +P L CD L LD++ + GA+P + + + + + + +
Sbjct: 276 LAENKFTGEIPDFLSGACDT--LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 118 LPLPIDV---GVILVEKASVVSKGEMVDYEDILNL---VRMIDISRNNF----------- 160
LP+ + G+ +++ + GE+ E + NL + +D+S NNF
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELP--ESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391
Query: 161 ---------------SGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFST 205
+GKIP ++N L SL+ S+N + IP S+G ++ L +
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451
Query: 206 NQLSGEIPESMXXXXXXXXXXXXXXXXTGKIPSS-TQLQSFDVSSFAGNDLCGAPIPK 262
N L GEIP+ + TG+IPS + + + S + N L G IPK
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE-IPK 508
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 110/243 (45%), Gaps = 17/243 (6%)
Query: 16 KLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLC 75
+L +D L+ ++ L+ LD+ NEF G +P + + ++ L L SN F GP+ LC
Sbjct: 333 ELPMDTLLKMRG---LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389
Query: 76 DLP--FLQILDIADTNLSGAIPNWINNLTGMVT-SCSFTRSVQQYLPLPIDVGVILVEKA 132
P LQ L + + +G IP ++N + +V+ SF YL I + + K
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF-----NYLSGTIPSSLGSLSKL 444
Query: 133 SVVS------KGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTR 186
+ +GE+ + + + + N+ +G+IP ++N L+ ++ S N T
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504
Query: 187 RIPESIGVMTSLESIDFSTNQLSGEIPESMXXXXXXXXXXXXXXXXTGKIPSSTQLQSFD 246
IP+ IG + +L + S N SG IP + G IP++ QS
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564
Query: 247 VSS 249
+++
Sbjct: 565 IAA 567
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 120/283 (42%), Gaps = 28/283 (9%)
Query: 6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK 65
+L L L N L+ +I L NCT L + + N G IP WIG R + +L L +N
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNS 522
Query: 66 FHGPLPTRLCDLPFLQILDIADTNLSGAIPN--------------------WINNLTGMV 105
F G +P L D L LD+ +G IP +I N GM
Sbjct: 523 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN-DGMK 581
Query: 106 TSCSFTRSVQQYLPLPIDVGVILVEK-----ASVVSKGEMVDYEDILNLVRMIDISRNNF 160
C ++ ++ + + L + S V G D + +D+S N
Sbjct: 582 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 641
Query: 161 SGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMXXXX 220
SG IP E+ ++ L LN +N + IP+ +G + L +D S+N+L G IP++M
Sbjct: 642 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 701
Query: 221 XXXXXXXXXXXXTGKIPSSTQLQSFDVSSFAGN-DLCGAPIPK 262
+G IP Q ++F + F N LCG P+P+
Sbjct: 702 MLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 132/298 (44%), Gaps = 44/298 (14%)
Query: 1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLI 60
+G ++L L + NKLS D ++ CT L+ L++ N+FVG IP + L
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLS 272
Query: 61 LRSNKFHGPLPTRL---CDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQY 117
L NKF G +P L CD L LD++ + GA+P + + + + + + +
Sbjct: 273 LAENKFTGEIPDFLSGACDT--LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 118 LPLPIDV---GVILVEKASVVSKGEMVDYEDILNL---VRMIDISRNNF----------- 160
LP+ + G+ +++ + GE+ E + NL + +D+S NNF
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELP--ESLTNLSASLLTLDLSSNNFSGPILPNLCQN 388
Query: 161 ---------------SGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFST 205
+GKIP ++N L SL+ S+N + IP S+G ++ L +
Sbjct: 389 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 448
Query: 206 NQLSGEIPESMXXXXXXXXXXXXXXXXTGKIPSS-TQLQSFDVSSFAGNDLCGAPIPK 262
N L GEIP+ + TG+IPS + + + S + N L G IPK
Sbjct: 449 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE-IPK 505
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 110/243 (45%), Gaps = 17/243 (6%)
Query: 16 KLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLC 75
+L +D L+ ++ L+ LD+ NEF G +P + + ++ L L SN F GP+ LC
Sbjct: 330 ELPMDTLLKMRG---LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 386
Query: 76 DLP--FLQILDIADTNLSGAIPNWINNLTGMVT-SCSFTRSVQQYLPLPIDVGVILVEKA 132
P LQ L + + +G IP ++N + +V+ SF YL I + + K
Sbjct: 387 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF-----NYLSGTIPSSLGSLSKL 441
Query: 133 SVVS------KGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTR 186
+ +GE+ + + + + N+ +G+IP ++N L+ ++ S N T
Sbjct: 442 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 501
Query: 187 RIPESIGVMTSLESIDFSTNQLSGEIPESMXXXXXXXXXXXXXXXXTGKIPSSTQLQSFD 246
IP+ IG + +L + S N SG IP + G IP++ QS
Sbjct: 502 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 561
Query: 247 VSS 249
+++
Sbjct: 562 IAA 564
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 98/231 (42%), Gaps = 33/231 (14%)
Query: 64 NKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLP---- 119
N GP+P + L L L I TN+SGAIP++++ + +VT ++ LP
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 120 -LPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNL------- 171
LP VG+ + +S Y L + ISRN +GKIP NL
Sbjct: 147 SLPNLVGITF--DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL 204
Query: 172 ----------------KALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPES 215
K ++ + NS + + +G+ +L +D N++ G +P+
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG 263
Query: 216 MXXXXXXXXXXXXXXXXTGKIPSSTQLQSFDVSSFAGND-LCGAPIPKNCT 265
+ G+IP LQ FDVS++A N LCG+P+P CT
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA-CT 313
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 59 LILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWIN 99
L LR+N+ +G LP L L FL L+++ NL G IP N
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 152 MIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGE 211
++D+ N + + NLK LH+L N ++ P + + LE + S NQL E
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-E 114
Query: 212 IPESM 216
+PE M
Sbjct: 115 LPEKM 119
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 152 MIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGE 211
++D+ N + + NLK LH+L N ++ P + + LE + S NQL E
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-E 114
Query: 212 IPESM 216
+PE M
Sbjct: 115 LPEKM 119
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 170 NLKALHSLNFSYNSF-TRRIPESIGVMTSLESIDFSTNQL 208
NLKAL L+ S N + + S G + SL+SIDFS+NQ+
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 100/226 (44%), Gaps = 30/226 (13%)
Query: 1 MGSLTSLVWLRLGKNKLSVDILVSL--KNCTTLESLDVGENEFVGNIPTWIGERFSRMVV 58
+ L +L L L N + SL KN + L++L++ NE +G + + + ++ +
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLG-LQSQAFKECPQLEL 401
Query: 59 LILRSNKFHGPLPTR-LCDLPFLQI-------LDIADTNLSGAIP-----NWINN--LTG 103
L L + H P +L FLQ+ LD ++ +L +P N N G
Sbjct: 402 LDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDG 461
Query: 104 MVTSCSFTRSVQQYLPLPI-DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG 162
+T + ++V L + G++ +++ + S G+M +D+S N+ +
Sbjct: 462 TITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKM----------SHVDLSHNSLTC 511
Query: 163 KIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQL 208
+++LK ++ LN + NS P + +++ +I+ S N L
Sbjct: 512 DSIDSLSHLKGIY-LNLAANSINIISPRLLPILSQQSTINLSHNPL 556
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEF 41
+ +L+ L WL +G N++S DI ++K+ T L+ L+VG N+
Sbjct: 239 LANLSQLTWLEIGTNQIS-DI-NAVKDLTKLKXLNVGSNQI 277
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
Length = 968
Score = 29.6 bits (65), Expect = 2.4, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 35/126 (27%)
Query: 61 LRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIP--------NWINNLTGMVTSCSFTR 112
L+ N+F P P R +LD NL+ + N +N TG
Sbjct: 830 LQLNRFLPPTPVR-------XLLDKNGNNLAAQVEFETFNRQLNAVNRHTG----SKLVN 878
Query: 113 SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLK 172
+VQQ + + +G +EK++ +ID +RN K+ E++ L+
Sbjct: 879 AVQQDVHAILQLGEAQIEKSARA----------------LIDAARNEADEKLSAELSRLE 922
Query: 173 ALHSLN 178
AL ++N
Sbjct: 923 ALRAVN 928
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 150 VRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDF 203
V+++D+ NN IP +VT+L+AL LN + N + +P+ GV L S+ +
Sbjct: 452 VKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQL-KSVPD--GVFDRLTSLQY 501
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 168 VTNLKALHSLNFSYNSFTR-RIPESIGVMTSLESIDFSTNQLSG 210
+ +LK L LN ++N ++PE +T+LE +D S+N++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 168 VTNLKALHSLNFSYNSFTR-RIPESIGVMTSLESIDFSTNQLSG 210
+ +LK L LN ++N ++PE +T+LE +D S+N++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 158 NNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQL 208
N GK+P + +K L SLN +YN T G +E++ F+ N+L
Sbjct: 340 NQLEGKLPAFGSEIK-LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 168 VTNLKALHSLNFSYNSFTR-RIPESIGVMTSLESIDFSTNQLSG 210
+ +LK L LN ++N ++PE +T+LE +D S+N++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 168 VTNLKALHSLNFSYNSFTR-RIPESIGVMTSLESIDFSTNQLSG 210
+ +LK L LN ++N ++PE +T+LE +D S+N++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 168 VTNLKALHSLNFSYNSFTR-RIPESIGVMTSLESIDFSTNQLSG 210
+ +LK L LN ++N ++PE +T+LE +D S+N++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3TL8|B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|F Chain F, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|K Chain K, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|L Chain L, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 117
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVIL 128
D AD L G + +N L + T+ R V Q LP+P+D+G L
Sbjct: 38 DEADAALRGLVQQGVN-LEHLRTA--LERHVMQRLPIPLDIGSAL 79
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 168 VTNLKALHSLNFSYNSFTR-RIPESIGVMTSLESIDFSTNQL 208
+ +LK L LN ++N ++PE +T+LE +D S+N++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 168 VTNLKALHSLNFSYNSFTR-RIPESIGVMTSLESIDFSTNQLSG 210
+ +LK L LN ++N ++PE +T+LE +D S+N++
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 168 VTNLKALHSLNFSYN---SFTRRIPESIGVMTSLESIDFSTNQLSG 210
+ +LK L LN ++N SF ++PE +T+LE +D S+N++
Sbjct: 120 IGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 152 MIDISRNNFSG-KIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQL 208
++D+S NN S + T L LHSL S+N E+ + +L +D S+N L
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,627,732
Number of Sequences: 62578
Number of extensions: 265509
Number of successful extensions: 628
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 473
Number of HSP's gapped (non-prelim): 74
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)