Query 047128
Match_columns 312
No_of_seqs 254 out of 3042
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 07:54:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 8.2E-32 1.8E-36 265.9 19.7 256 2-258 329-610 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.5E-29 3.3E-34 249.8 17.7 255 1-257 304-585 (968)
3 KOG4194 Membrane glycoprotein 99.9 3.4E-27 7.5E-32 206.2 1.8 250 6-256 174-429 (873)
4 KOG4194 Membrane glycoprotein 99.9 5.8E-27 1.3E-31 204.8 0.2 258 1-259 193-456 (873)
5 KOG0444 Cytoskeletal regulator 99.9 3E-26 6.6E-31 202.1 -1.7 251 2-259 75-332 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 3.7E-24 8E-29 189.1 -0.8 252 3-261 101-381 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 2.2E-24 4.7E-29 181.2 -2.4 247 2-256 203-541 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 2.4E-24 5.2E-29 180.9 -7.4 239 7-255 47-309 (565)
9 KOG4237 Extracellular matrix p 99.8 3E-23 6.6E-28 173.9 -2.8 229 7-236 69-362 (498)
10 KOG4237 Extracellular matrix p 99.8 2.8E-21 6E-26 162.2 0.6 235 14-256 55-359 (498)
11 KOG0617 Ras suppressor protein 99.8 6.1E-22 1.3E-26 148.5 -4.1 185 24-236 28-215 (264)
12 PRK15370 E3 ubiquitin-protein 99.8 8.7E-19 1.9E-23 165.0 10.4 224 6-255 200-427 (754)
13 KOG0618 Serine/threonine phosp 99.8 1.5E-20 3.3E-25 172.6 -1.9 240 5-253 219-486 (1081)
14 KOG0617 Ras suppressor protein 99.8 1.9E-20 4.1E-25 140.5 -1.5 163 3-194 31-194 (264)
15 PRK15387 E3 ubiquitin-protein 99.8 5.8E-18 1.2E-22 158.9 13.2 220 7-258 224-460 (788)
16 PRK15370 E3 ubiquitin-protein 99.8 4E-18 8.8E-23 160.5 11.5 206 5-234 220-429 (754)
17 PLN03210 Resistant to P. syrin 99.7 8.2E-17 1.8E-21 160.8 18.8 244 4-253 610-903 (1153)
18 PLN03210 Resistant to P. syrin 99.7 9.5E-17 2E-21 160.3 16.3 242 7-259 591-862 (1153)
19 PRK15387 E3 ubiquitin-protein 99.7 4.5E-17 9.8E-22 152.9 11.3 206 4-238 241-463 (788)
20 KOG0618 Serine/threonine phosp 99.7 1.5E-19 3.3E-24 166.1 -5.9 244 2-257 196-466 (1081)
21 cd00116 LRR_RI Leucine-rich re 99.7 2.1E-18 4.5E-23 149.9 -0.2 236 4-258 22-293 (319)
22 cd00116 LRR_RI Leucine-rich re 99.7 1.7E-17 3.7E-22 144.2 4.9 213 3-234 49-292 (319)
23 PLN03150 hypothetical protein; 99.7 4.9E-16 1.1E-20 145.5 12.2 117 149-265 419-538 (623)
24 KOG0532 Leucine-rich repeat (L 99.6 1.2E-16 2.6E-21 140.3 -4.0 181 27-239 73-253 (722)
25 KOG0532 Leucine-rich repeat (L 99.5 1.8E-16 3.9E-21 139.2 -4.4 192 7-231 77-271 (722)
26 COG4886 Leucine-rich repeat (L 99.5 5.2E-14 1.1E-18 126.0 6.8 199 9-239 97-296 (394)
27 COG4886 Leucine-rich repeat (L 99.5 1.2E-13 2.6E-18 123.7 7.2 195 33-258 97-292 (394)
28 KOG3207 Beta-tubulin folding c 99.3 5.5E-13 1.2E-17 114.1 1.9 207 3-234 119-340 (505)
29 PF14580 LRR_9: Leucine-rich r 99.3 3.4E-12 7.5E-17 99.4 5.4 39 171-209 87-126 (175)
30 PLN03150 hypothetical protein; 99.3 1.2E-11 2.6E-16 116.2 9.5 91 147-237 441-532 (623)
31 PF14580 LRR_9: Leucine-rich r 99.3 1.2E-11 2.6E-16 96.3 6.9 126 25-202 15-146 (175)
32 KOG1259 Nischarin, modulator o 99.2 1.9E-12 4.1E-17 106.1 1.7 203 25-259 210-415 (490)
33 KOG1909 Ran GTPase-activating 99.2 2.8E-12 6E-17 107.0 1.2 235 3-255 28-310 (382)
34 KOG3207 Beta-tubulin folding c 99.2 6.1E-12 1.3E-16 107.8 0.5 186 3-210 144-340 (505)
35 KOG1259 Nischarin, modulator o 99.1 5.2E-12 1.1E-16 103.6 -0.3 132 28-214 283-416 (490)
36 PF13855 LRR_8: Leucine rich r 99.1 3E-11 6.6E-16 77.7 2.8 59 6-65 2-60 (61)
37 PF13855 LRR_8: Leucine rich r 99.1 4.3E-11 9.3E-16 77.0 2.9 61 29-90 1-61 (61)
38 KOG1859 Leucine-rich repeat pr 99.0 7.5E-12 1.6E-16 113.5 -5.4 112 145-261 184-297 (1096)
39 KOG0531 Protein phosphatase 1, 99.0 1.5E-10 3.3E-15 104.1 2.8 106 3-115 93-199 (414)
40 KOG0531 Protein phosphatase 1, 99.0 7.3E-11 1.6E-15 106.1 -0.8 197 4-234 71-269 (414)
41 KOG1909 Ran GTPase-activating 98.9 3.5E-10 7.6E-15 94.6 1.8 213 3-233 56-311 (382)
42 KOG4658 Apoptotic ATPase [Sign 98.8 1.3E-09 2.8E-14 105.1 3.1 107 4-112 544-652 (889)
43 KOG4579 Leucine-rich repeat (L 98.7 1.7E-09 3.6E-14 78.9 -1.1 98 7-108 29-129 (177)
44 KOG4658 Apoptotic ATPase [Sign 98.6 4.3E-08 9.4E-13 94.8 6.1 200 6-234 524-731 (889)
45 KOG2982 Uncharacterized conser 98.6 9.1E-09 2E-13 84.6 1.0 204 27-233 69-290 (418)
46 KOG1859 Leucine-rich repeat pr 98.6 3.9E-10 8.4E-15 102.7 -8.8 182 22-235 102-294 (1096)
47 COG5238 RNA1 Ran GTPase-activa 98.5 9.6E-08 2.1E-12 77.8 4.1 235 4-257 29-317 (388)
48 KOG2120 SCF ubiquitin ligase, 98.5 5.6E-09 1.2E-13 85.9 -4.2 176 7-230 187-373 (419)
49 KOG4579 Leucine-rich repeat (L 98.4 2.8E-08 6.1E-13 72.6 -1.1 81 150-233 55-136 (177)
50 PF12799 LRR_4: Leucine Rich r 98.4 4.2E-07 9.2E-12 53.6 3.2 37 5-42 1-37 (44)
51 PF12799 LRR_4: Leucine Rich r 98.3 1E-06 2.3E-11 52.0 3.6 35 174-209 3-37 (44)
52 KOG2982 Uncharacterized conser 98.3 2E-07 4.4E-12 76.9 0.6 189 29-238 45-267 (418)
53 KOG2120 SCF ubiquitin ligase, 98.2 1.1E-07 2.3E-12 78.5 -2.6 161 2-207 207-374 (419)
54 PRK15386 type III secretion pr 98.1 1.1E-05 2.4E-10 71.0 8.1 55 27-88 50-104 (426)
55 KOG1644 U2-associated snRNP A' 98.1 7.6E-06 1.6E-10 64.0 6.3 62 31-96 21-82 (233)
56 KOG1644 U2-associated snRNP A' 98.1 5.5E-06 1.2E-10 64.8 4.5 103 6-112 43-150 (233)
57 KOG3665 ZYG-1-like serine/thre 97.9 8.5E-06 1.8E-10 77.2 3.7 83 29-113 122-206 (699)
58 PF13306 LRR_5: Leucine rich r 97.9 5.7E-05 1.2E-09 56.2 7.0 62 23-87 6-67 (129)
59 PRK15386 type III secretion pr 97.9 0.00015 3.3E-09 63.9 10.3 133 52-230 50-187 (426)
60 COG5238 RNA1 Ran GTPase-activa 97.8 1.9E-05 4.2E-10 64.6 3.4 191 23-234 86-317 (388)
61 PF13306 LRR_5: Leucine rich r 97.7 0.00011 2.4E-09 54.6 6.5 81 2-86 9-89 (129)
62 KOG3665 ZYG-1-like serine/thre 97.7 2.7E-05 5.8E-10 73.9 3.3 89 144-234 169-264 (699)
63 KOG2739 Leucine-rich acidic nu 97.3 0.00027 5.9E-09 57.7 3.6 100 4-108 42-149 (260)
64 KOG2739 Leucine-rich acidic nu 97.1 0.00037 7.9E-09 56.9 2.7 89 25-116 39-130 (260)
65 KOG2123 Uncharacterized conser 96.8 8.7E-05 1.9E-09 61.1 -3.2 82 147-233 18-101 (388)
66 KOG2123 Uncharacterized conser 96.6 0.00015 3.2E-09 59.8 -3.1 80 28-112 18-98 (388)
67 PF00560 LRR_1: Leucine Rich R 96.2 0.003 6.5E-08 30.9 1.3 19 7-26 2-20 (22)
68 PF00560 LRR_1: Leucine Rich R 96.1 0.0028 6.1E-08 31.0 1.0 18 198-216 2-19 (22)
69 smart00370 LRR Leucine-rich re 95.6 0.015 3.3E-07 29.7 2.5 22 28-50 1-22 (26)
70 smart00369 LRR_TYP Leucine-ric 95.6 0.015 3.3E-07 29.7 2.5 22 28-50 1-22 (26)
71 KOG0473 Leucine-rich repeat pr 95.3 0.00044 9.6E-09 55.6 -5.6 85 3-91 40-124 (326)
72 PF13504 LRR_7: Leucine rich r 95.2 0.012 2.5E-07 26.8 1.1 9 32-40 4-12 (17)
73 KOG4308 LRR-containing protein 94.9 0.00022 4.8E-09 64.9 -9.8 86 148-233 204-303 (478)
74 KOG0473 Leucine-rich repeat pr 94.5 0.00098 2.1E-08 53.7 -5.6 85 146-233 40-124 (326)
75 KOG4308 LRR-containing protein 93.8 0.00083 1.8E-08 61.2 -8.5 186 7-210 89-304 (478)
76 smart00370 LRR Leucine-rich re 93.5 0.065 1.4E-06 27.2 1.9 23 4-26 1-23 (26)
77 smart00369 LRR_TYP Leucine-ric 93.5 0.065 1.4E-06 27.2 1.9 23 4-26 1-23 (26)
78 KOG1947 Leucine rich repeat pr 92.9 0.012 2.6E-07 54.1 -2.6 113 27-160 186-307 (482)
79 PF08693 SKG6: Transmembrane a 92.1 0.24 5.2E-06 28.0 3.0 26 283-308 9-34 (40)
80 PF13516 LRR_6: Leucine Rich r 91.2 0.062 1.3E-06 26.7 -0.0 16 5-20 2-17 (24)
81 KOG3864 Uncharacterized conser 89.9 0.027 5.8E-07 44.6 -2.9 80 31-111 103-185 (221)
82 KOG3864 Uncharacterized conser 88.5 0.067 1.4E-06 42.4 -1.7 80 150-229 103-185 (221)
83 smart00364 LRR_BAC Leucine-ric 86.3 0.52 1.1E-05 23.9 1.4 17 30-47 3-19 (26)
84 smart00365 LRR_SD22 Leucine-ri 85.0 0.81 1.8E-05 23.3 1.7 13 30-42 3-15 (26)
85 PF15102 TMEM154: TMEM154 prot 83.7 2.4 5.3E-05 31.7 4.4 20 293-312 66-85 (146)
86 KOG4341 F-box protein containi 79.7 0.83 1.8E-05 40.5 1.0 87 4-90 267-358 (483)
87 PF08114 PMP1_2: ATPase proteo 79.7 0.61 1.3E-05 26.2 0.1 20 293-312 14-33 (43)
88 smart00368 LRR_RI Leucine rich 78.2 1.9 4.1E-05 22.2 1.7 13 6-18 3-15 (28)
89 PF07204 Orthoreo_P10: Orthore 78.2 0.49 1.1E-05 32.1 -0.7 29 284-312 40-68 (98)
90 PF04478 Mid2: Mid2 like cell 77.3 5.1 0.00011 30.3 4.3 16 296-311 63-78 (154)
91 PF08374 Protocadherin: Protoc 77.2 1.8 4E-05 34.5 2.1 28 281-308 33-60 (221)
92 KOG4341 F-box protein containi 77.1 1.3 2.9E-05 39.2 1.5 63 27-89 266-331 (483)
93 KOG3763 mRNA export factor TAP 75.5 1.6 3.5E-05 40.1 1.6 63 170-234 216-284 (585)
94 KOG1947 Leucine rich repeat pr 75.1 1.9 4.1E-05 39.5 2.0 88 3-90 212-307 (482)
95 KOG3763 mRNA export factor TAP 74.8 2.3 5E-05 39.2 2.3 62 27-91 216-283 (585)
96 TIGR00864 PCC polycystin catio 74.0 2.1 4.6E-05 46.9 2.2 36 202-237 1-36 (2740)
97 PF14575 EphA2_TM: Ephrin type 72.7 0.86 1.9E-05 30.2 -0.6 24 288-311 3-26 (75)
98 PTZ00382 Variant-specific surf 69.7 4.8 0.0001 28.0 2.6 7 305-311 89-95 (96)
99 PF05454 DAG1: Dystroglycan (D 66.2 1.9 4.2E-05 36.6 0.0 26 286-311 148-173 (290)
100 PF14991 MLANA: Protein melan- 64.6 2 4.4E-05 30.4 -0.1 20 292-311 31-50 (118)
101 PF02439 Adeno_E3_CR2: Adenovi 63.3 1.3 2.8E-05 24.7 -1.0 20 291-310 12-31 (38)
102 TIGR00864 PCC polycystin catio 61.5 6.5 0.00014 43.5 2.7 32 11-42 1-32 (2740)
103 PF04478 Mid2: Mid2 like cell 58.7 14 0.0003 28.0 3.3 27 284-310 47-73 (154)
104 PF01034 Syndecan: Syndecan do 58.2 3.4 7.3E-05 26.1 0.1 6 292-297 19-24 (64)
105 PTZ00382 Variant-specific surf 56.6 5.6 0.00012 27.7 0.9 26 286-311 66-91 (96)
106 smart00367 LRR_CC Leucine-rich 53.2 9.9 0.00021 19.0 1.3 11 5-15 2-12 (26)
107 PF01299 Lamp: Lysosome-associ 46.3 7.1 0.00015 33.7 0.2 11 301-311 288-298 (306)
108 PF15012 DUF4519: Domain of un 44.4 22 0.00048 21.8 2.0 23 287-309 29-51 (56)
109 PF11446 DUF2897: Protein of u 42.7 6.5 0.00014 24.2 -0.4 20 284-303 4-23 (55)
110 PF01102 Glycophorin_A: Glycop 42.2 5.3 0.00012 29.1 -1.0 11 289-299 67-77 (122)
111 PF01102 Glycophorin_A: Glycop 39.7 6 0.00013 28.9 -1.1 27 284-311 66-92 (122)
112 PF04971 Lysis_S: Lysis protei 39.5 13 0.00029 23.8 0.6 29 283-311 30-58 (68)
113 PRK14762 membrane protein; Pro 36.3 10 0.00022 18.8 -0.2 20 287-306 4-23 (27)
114 PF03302 VSP: Giardia variant- 34.8 19 0.00042 32.4 1.1 24 286-309 367-390 (397)
115 PF13908 Shisa: Wnt and FGF in 34.3 33 0.00071 27.0 2.2 13 286-298 79-91 (179)
116 PF10661 EssA: WXG100 protein 31.5 8.1 0.00018 29.2 -1.5 25 288-312 120-144 (145)
117 PF14610 DUF4448: Protein of u 31.0 34 0.00074 27.2 1.8 21 285-305 156-176 (189)
118 PF02404 SCF: Stem cell factor 29.4 18 0.00039 30.0 0.0 35 277-311 206-240 (273)
119 PF05624 LSR: Lipolysis stimul 29.1 68 0.0015 18.7 2.3 19 286-304 2-20 (49)
120 PF11980 DUF3481: Domain of un 29.0 18 0.00038 24.2 -0.1 18 283-300 13-30 (87)
121 PF06365 CD34_antigen: CD34/Po 28.7 69 0.0015 25.8 3.1 8 305-312 123-130 (202)
122 PF10873 DUF2668: Protein of u 28.4 49 0.0011 24.8 2.1 24 282-305 57-80 (155)
123 PF12877 DUF3827: Domain of un 27.2 47 0.001 31.5 2.3 24 280-303 264-287 (684)
124 PRK10132 hypothetical protein; 27.1 38 0.00081 24.2 1.3 20 290-311 89-108 (108)
125 PF10808 DUF2542: Protein of u 25.7 22 0.00049 23.1 -0.0 32 279-310 48-79 (79)
126 PTZ00370 STEVOR; Provisional 25.7 25 0.00054 29.7 0.2 22 290-311 261-282 (296)
127 TIGR01478 STEVOR variant surfa 25.6 25 0.00054 29.7 0.2 22 290-311 265-286 (295)
128 PF05808 Podoplanin: Podoplani 25.2 24 0.00051 27.1 0.0 17 284-300 127-143 (162)
129 PF03908 Sec20: Sec20; InterP 25.2 33 0.00073 23.5 0.7 10 302-311 82-91 (92)
130 PF05545 FixQ: Cbb3-type cytoc 21.5 42 0.00091 19.9 0.6 15 296-310 18-32 (49)
131 PF06809 NPDC1: Neural prolife 20.6 93 0.002 26.8 2.6 17 287-303 199-215 (341)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.2e-32 Score=265.92 Aligned_cols=256 Identities=30% Similarity=0.429 Sum_probs=157.0
Q ss_pred CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128 2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ 81 (312)
Q Consensus 2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 81 (312)
.++++|+.|++++|.+++..|..+..+++|+.|++++|++.+.+|..+. .+++|+.|++++|++.+..|..+..+++|+
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~ 407 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSNSLEGEIPKSLGACRSLR 407 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh-CcCCCCEEECcCCEecccCCHHHhCCCCCC
Confidence 4567777777777777777777777777777777777777766666655 566666666666666666666566666666
Q ss_pred EEEccCCCCCcccchhhHhhcccccccccccccccccCC------------------------CCcc-ceeeeeeeeeee
Q 047128 82 ILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPL------------------------PIDV-GVILVEKASVVS 136 (312)
Q Consensus 82 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~------------------------~~~~-~~~~~~~~~~~~ 136 (312)
.|++++|.+++..|..+..++.|+.+++.+|.+.+..+. .... ....++...+..
T Consensus 408 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l 487 (968)
T PLN00113 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQF 487 (968)
T ss_pred EEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCcc
Confidence 666666666555555566666666666655555443322 1111 001111111112
Q ss_pred cCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccc
Q 047128 137 KGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESM 216 (312)
Q Consensus 137 ~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~ 216 (312)
.+..+..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..+
T Consensus 488 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 567 (968)
T PLN00113 488 SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567 (968)
T ss_pred CCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhH
Confidence 23334445556666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCCCCCeEecccCcccccCCCCCCCCCCccccccCC-CCCCC
Q 047128 217 SSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGN-DLCGA 258 (312)
Q Consensus 217 ~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n-~l~~~ 258 (312)
..+..|+.+++++|++++.+|..+.+..+....+.+| .+|+.
T Consensus 568 ~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~ 610 (968)
T PLN00113 568 GNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG 610 (968)
T ss_pred hcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCC
Confidence 6666666666666666666666655555555556666 35543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.5e-29 Score=249.85 Aligned_cols=255 Identities=30% Similarity=0.431 Sum_probs=216.1
Q ss_pred CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128 1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL 80 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 80 (312)
+.++++|++|++++|.+++..|..+.++++|++|++++|.+.+.+|..+. .+++|+.|++++|++++..|..+..+++|
T Consensus 304 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L 382 (968)
T PLN00113 304 VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG-KHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382 (968)
T ss_pred HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh-CCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence 35688999999999999989999999999999999999999989999887 89999999999999999999999999999
Q ss_pred cEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccc--eeeeeeeeee-----------------------
Q 047128 81 QILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVG--VILVEKASVV----------------------- 135 (312)
Q Consensus 81 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~--~~~~~~~~~~----------------------- 135 (312)
+.|++++|.+.+..|..+..+++|+.+++.+|.+.+..+..+... ........+.
T Consensus 383 ~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 462 (968)
T PLN00113 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462 (968)
T ss_pred CEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCc
Confidence 999999999999999999999999999999999886555433211 0011100000
Q ss_pred -ecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCc
Q 047128 136 -SKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPE 214 (312)
Q Consensus 136 -~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 214 (312)
..+..+..+ ..++|+.|++++|++++..|..+.++++|++|++++|++.+.+|..+..+++|++|++++|.+++.+|.
T Consensus 463 ~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 541 (968)
T PLN00113 463 KFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541 (968)
T ss_pred eeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCCh
Confidence 011112211 246788899999999988999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCeEecccCcccccCCCC-CCCCCCccccccCCCCCC
Q 047128 215 SMSSLTFSNHLNLSNNNLTGKIPSS-TQLQSFDVSSFAGNDLCG 257 (312)
Q Consensus 215 ~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~l~~n~l~~ 257 (312)
.+..+++|+.|++++|++++.+|.. ..+..++.+++++|.+.+
T Consensus 542 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 542 SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred hHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 9999999999999999999887765 678889999999997765
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=3.4e-27 Score=206.20 Aligned_cols=250 Identities=18% Similarity=0.160 Sum_probs=127.0
Q ss_pred CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEc
Q 047128 6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDI 85 (312)
Q Consensus 6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 85 (312)
++++|+|++|+|+......|.++.+|..|.|+.|+++ .+|...|+++++|+.|+|..|++...-...|.++++|+.|.+
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 3555555555555444445555555555555555555 555555544555555555555555222334555555555555
Q ss_pred cCCCCCcccchhhHhhcccccccccccccccccCCCCccc-eeee-eeeeeeecCcccchHHHhccccEEEcCCCccccc
Q 047128 86 ADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVG-VILV-EKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK 163 (312)
Q Consensus 86 ~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~ 163 (312)
..|.+.......|-.+.+++.++++.|++...-..-.+.. .... ....+.......+.-...++|+.|+|+.|+|+..
T Consensus 253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL 332 (873)
T ss_pred hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence 5555544444445555555555555555443222111100 0000 0000000000111112234455555555555544
Q ss_pred CChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCc---cccCCCCCCeEecccCcccccCCCC-
Q 047128 164 IPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPE---SMSSLTFSNHLNLSNNNLTGKIPSS- 239 (312)
Q Consensus 164 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~---~~~~l~~L~~L~l~~N~l~~~~~~~- 239 (312)
.+.+|..+..|++|+|++|.+....-..|..+.+|++|||++|.++..+.+ .|..+++|+.|++.+|++.......
T Consensus 333 ~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAf 412 (873)
T KOG4194|consen 333 DEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAF 412 (873)
T ss_pred ChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhh
Confidence 555555555555555555555533344556667777777777777654433 3566777777777777776443332
Q ss_pred CCCCCCccccccCCCCC
Q 047128 240 TQLQSFDVSSFAGNDLC 256 (312)
Q Consensus 240 ~~l~~l~~~~l~~n~l~ 256 (312)
..+..|+.+++.+|.+.
T Consensus 413 sgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 413 SGLEALEHLDLGDNAIA 429 (873)
T ss_pred ccCcccceecCCCCcce
Confidence 56777777777777544
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=5.8e-27 Score=204.80 Aligned_cols=258 Identities=19% Similarity=0.217 Sum_probs=181.9
Q ss_pred CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128 1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL 80 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 80 (312)
|.++.+|..|.|+.|+|+...+..|+++++|+.|+|..|+|. .+-...|+++++|+.|.+..|.+...-...|..+.++
T Consensus 193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~km 271 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKM 271 (873)
T ss_pred ccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeeccc
Confidence 556777888888888887666677777888888888888776 5544455567777777777777665445556667777
Q ss_pred cEEEccCCCCCcccchhhHhhcccccccccccccccccCCC--CccceeeeeeeeeeecCcccchHHHhccccEEEcCCC
Q 047128 81 QILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP--IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRN 158 (312)
Q Consensus 81 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n 158 (312)
++|++..|+++..-..++-+++.|+.|+++.|.+.+..... +......+....+....-....+..+..|+.|+|+.|
T Consensus 272 e~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 272 EHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred ceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc
Confidence 77777777766555556666777777777776666433221 1112222222222223333556677889999999999
Q ss_pred cccccCChhhhcCCCCCEEEccCCCCccccC---hhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCccccc
Q 047128 159 NFSGKIPLEVTNLKALHSLNFSYNSFTRRIP---ESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGK 235 (312)
Q Consensus 159 ~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 235 (312)
.++..-..+|..+.+|++|||++|.+++.+- ..|..+++|+.|++.+|++.......|..++.|++|||.+|.|...
T Consensus 352 si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 352 SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceee
Confidence 9997777789999999999999999986554 3467899999999999999954456899999999999999999876
Q ss_pred CCCCCCCCCCccccccCC-CCCCCC
Q 047128 236 IPSSTQLQSFDVSSFAGN-DLCGAP 259 (312)
Q Consensus 236 ~~~~~~l~~l~~~~l~~n-~l~~~p 259 (312)
-+....-..|+.+.+..- -+|++.
T Consensus 432 q~nAFe~m~Lk~Lv~nSssflCDCq 456 (873)
T KOG4194|consen 432 QPNAFEPMELKELVMNSSSFLCDCQ 456 (873)
T ss_pred cccccccchhhhhhhcccceEEecc
Confidence 665533236666655443 556543
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=3e-26 Score=202.10 Aligned_cols=251 Identities=26% Similarity=0.315 Sum_probs=196.5
Q ss_pred CCCCCcCEEECCCCccc-ccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128 2 GSLTSLVWLRLGKNKLS-VDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL 80 (312)
Q Consensus 2 ~~l~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 80 (312)
+.++.|+.+++++|++. .-+|..+..+..|..||||+|++. ++|..+. .-+++-.|+||+|+|..+.-..|.++..|
T Consensus 75 s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~IetIPn~lfinLtDL 152 (1255)
T KOG0444|consen 75 SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIETIPNSLFINLTDL 152 (1255)
T ss_pred ccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCccccCCchHHHhhHhH
Confidence 56888999999999885 236777778999999999999999 9999987 78899999999999994433447788999
Q ss_pred cEEEccCCCCCcccchhhHhhcccccccccccccccc--cCCCCccceeeeeeeeee--ecCcccchHHHhccccEEEcC
Q 047128 81 QILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQY--LPLPIDVGVILVEKASVV--SKGEMVDYEDILNLVRMIDIS 156 (312)
Q Consensus 81 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~L~ls 156 (312)
-.||+|+|++. .+|.....+..|++|.+++|.+... ...+.-.. ....+.+.. .-..++.....+.+|+.+|+|
T Consensus 153 LfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmts-L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 153 LFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTS-LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred hhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchh-hhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 99999999998 7888899999999999999987621 11111111 111111111 123456666778899999999
Q ss_pred CCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCccc--c
Q 047128 157 RNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLT--G 234 (312)
Q Consensus 157 ~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~--~ 234 (312)
.|.+. ..|+.+.++++|+.|+||+|+|+ .+....+.+.+|++|++|+|+++ ..|+.+..++.|+.|++.+|+++ |
T Consensus 231 ~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeG 307 (1255)
T KOG0444|consen 231 ENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEG 307 (1255)
T ss_pred ccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccC
Confidence 99999 89999999999999999999998 66666677889999999999999 88999999999999999999764 6
Q ss_pred cCCCCCCCCCCccccccCCCCCCCC
Q 047128 235 KIPSSTQLQSFDVSSFAGNDLCGAP 259 (312)
Q Consensus 235 ~~~~~~~l~~l~~~~l~~n~l~~~p 259 (312)
.+..++.+..|+.+...+|.+.-.|
T Consensus 308 iPSGIGKL~~Levf~aanN~LElVP 332 (1255)
T KOG0444|consen 308 IPSGIGKLIQLEVFHAANNKLELVP 332 (1255)
T ss_pred CccchhhhhhhHHHHhhccccccCc
Confidence 6666677888888777777555444
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=3.7e-24 Score=189.06 Aligned_cols=252 Identities=22% Similarity=0.315 Sum_probs=186.8
Q ss_pred CCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcE
Q 047128 3 SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQI 82 (312)
Q Consensus 3 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 82 (312)
++..|+.|||++|+++ .+|..+..-+++-+|+||+|.|. .||..++.++..|-.||||+|++. .+|+.+..+.+|++
T Consensus 101 ~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQT 177 (1255)
T ss_pred ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhh
Confidence 5678899999999998 78888888888999999999998 899888888888888899999888 66766777777777
Q ss_pred EEccCCCCCc-------------------------ccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeee-
Q 047128 83 LDIADTNLSG-------------------------AIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVS- 136 (312)
Q Consensus 83 L~l~~n~l~~-------------------------~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~- 136 (312)
|++++|.+.. -+|.++..+.+|..++++.|++......-... ..+..++.+.
T Consensus 178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l--~~LrrLNLS~N 255 (1255)
T KOG0444|consen 178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKL--RNLRRLNLSGN 255 (1255)
T ss_pred hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhh--hhhheeccCcC
Confidence 7777775421 24455566666666677777665432111110 0000111100
Q ss_pred -cCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCc-cccChhhcCCCCCcEEECCCccCCccCCc
Q 047128 137 -KGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFT-RRIPESIGVMTSLESIDFSTNQLSGEIPE 214 (312)
Q Consensus 137 -~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 214 (312)
-.+.......+.+|+.|++|+|+++ ..|++++++++|+.|.+.+|+++ ..+|..++++.+|+.+..++|.+. ..|+
T Consensus 256 ~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPE 333 (1255)
T KOG0444|consen 256 KITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPE 333 (1255)
T ss_pred ceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCch
Confidence 0112223345667888888888888 78889999999999999999875 357888889999999999999988 8899
Q ss_pred cccCCCCCCeEecccCcccccCCCCCCCCCCccccccCC-CCCCCCCC
Q 047128 215 SMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGN-DLCGAPIP 261 (312)
Q Consensus 215 ~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n-~l~~~p~~ 261 (312)
.++.++.|+.|.|++|++-..+..+..++.++.+++..| .+.-.|.+
T Consensus 334 glcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 334 GLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred hhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCCc
Confidence 999999999999999998866666677888899999998 66655544
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=2.2e-24 Score=181.16 Aligned_cols=247 Identities=26% Similarity=0.377 Sum_probs=171.0
Q ss_pred CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128 2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ 81 (312)
Q Consensus 2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 81 (312)
+.+.+|..|+|..|.|. ..| .|.++..|+++.++.|++. .+|....+.++++..||++.|+++ ..|+.+.-+.+|+
T Consensus 203 g~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~ 278 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLE 278 (565)
T ss_pred cchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhh
Confidence 56777788888888887 555 7888888888888888888 899888888999999999999999 8899999999999
Q ss_pred EEEccCCCCCcccchhhHhhccccccccccccccccc---------------CC-----CCc----ccee----------
Q 047128 82 ILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYL---------------PL-----PID----VGVI---------- 127 (312)
Q Consensus 82 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~---------------~~-----~~~----~~~~---------- 127 (312)
+||+|+|.++ .+|..++++ +|+.+.+.+|.+.... .. ... ....
T Consensus 279 rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~ 356 (565)
T KOG0472|consen 279 RLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFP 356 (565)
T ss_pred hhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCccc
Confidence 9999999998 788889999 9999999988765210 00 000 0000
Q ss_pred -----------eeeeeeee--------------------ecC---------------------------cccchHHHhcc
Q 047128 128 -----------LVEKASVV--------------------SKG---------------------------EMVDYEDILNL 149 (312)
Q Consensus 128 -----------~~~~~~~~--------------------~~~---------------------------~~~~~~~~~~~ 149 (312)
........ ... -.+...+.+++
T Consensus 357 ~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~k 436 (565)
T KOG0472|consen 357 DIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQK 436 (565)
T ss_pred chhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhc
Confidence 00000000 000 00112233455
Q ss_pred ccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEeccc
Q 047128 150 VRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSN 229 (312)
Q Consensus 150 L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 229 (312)
|+.|++++|.+. .+|..++.+..|+.|+++.|+|. .+|....-+..++.+-.++|++....|+.+..+.+|+.||+.+
T Consensus 437 Lt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n 514 (565)
T KOG0472|consen 437 LTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN 514 (565)
T ss_pred ceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence 555555555555 45555555555666666666554 5555544444455555555666644455577888999999999
Q ss_pred CcccccCCCCCCCCCCccccccCCCCC
Q 047128 230 NNLTGKIPSSTQLQSFDVSSFAGNDLC 256 (312)
Q Consensus 230 N~l~~~~~~~~~l~~l~~~~l~~n~l~ 256 (312)
|.+...+|..+.+.+++.+.+.||++.
T Consensus 515 Ndlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 515 NDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred CchhhCChhhccccceeEEEecCCccC
Confidence 999988888889999999999999776
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=2.4e-24 Score=180.92 Aligned_cols=239 Identities=23% Similarity=0.318 Sum_probs=125.6
Q ss_pred cCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEcc
Q 047128 7 LVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIA 86 (312)
Q Consensus 7 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 86 (312)
|+.+++++|.+. ...+.+.++..|.++++++|++. .+|.+++ .+..++.++.+.|++. .+|..+..+.+|+.++.+
T Consensus 47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig-~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIG-ELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHH-HHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 444555555554 23334445555555555555555 5555554 4455555555555554 444444445555555555
Q ss_pred CCCCCcccchhhHhhcccccccccccccccccCCCCccce-eeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCC
Q 047128 87 DTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGV-ILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP 165 (312)
Q Consensus 87 ~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p 165 (312)
+|.+. .+|+.++.+..+..++..+|++........+... .......+......+... .|+.|++||...|-++ .+|
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP 199 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLP 199 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCC
Confidence 55444 4444444444444444444444322221111100 000000000001111111 2444555555554444 344
Q ss_pred hhhhcC----------------------CCCCEEEccCCCCccccChhh-cCCCCCcEEECCCccCCccCCccccCCCCC
Q 047128 166 LEVTNL----------------------KALHSLNFSYNSFTRRIPESI-GVMTSLESIDFSTNQLSGEIPESMSSLTFS 222 (312)
Q Consensus 166 ~~~~~l----------------------~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L 222 (312)
+.++.+ ..|.+++++.|.|. .+|... .+++++..||+.+|+++ +.|+.+.-+.+|
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL 277 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSL 277 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhh
Confidence 444444 44455555555544 444443 37788888888888888 788888888888
Q ss_pred CeEecccCcccccCCCCCCCCCCccccccCCCC
Q 047128 223 NHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDL 255 (312)
Q Consensus 223 ~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l 255 (312)
.+||+++|.|++.+++.+.+ ++..+.+.||++
T Consensus 278 ~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 278 ERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred hhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 88888888888888888777 788888888854
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=3e-23 Score=173.87 Aligned_cols=229 Identities=17% Similarity=0.155 Sum_probs=157.6
Q ss_pred cCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccC-CcccccCCcCCCCCCCCcEEEc
Q 047128 7 LVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRS-NKFHGPLPTRLCDLPFLQILDI 85 (312)
Q Consensus 7 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l 85 (312)
-..++|..|+|+.+.+.+|+.+++|++|||++|.|+ .|.++.|++++++..|-+.+ |+|+......|.++..|+.|.+
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 345777777777666777777777777777777777 66666666777766655544 7777444445677777777777
Q ss_pred cCCCCCcccchhhHhhcccccccccccccccccCCCCcc-----------------------------ceeeeeeeeee-
Q 047128 86 ADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDV-----------------------------GVILVEKASVV- 135 (312)
Q Consensus 86 ~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~-----------------------------~~~~~~~~~~~- 135 (312)
.-|++.-...+.|..++++..|.+..|.+.......+.. ...........
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 666666555666666666666655555443221111000 00000000000
Q ss_pred ----------------------------------ecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccC
Q 047128 136 ----------------------------------SKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSY 181 (312)
Q Consensus 136 ----------------------------------~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~ 181 (312)
...-....|..+++|+.|++++|+++++-+.+|.....+++|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 0001123567789999999999999988888999999999999999
Q ss_pred CCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccC
Q 047128 182 NSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKI 236 (312)
Q Consensus 182 n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 236 (312)
|++.......|.++..|+.|+|.+|+|+..-|..|..+..|.+|++-.|++.+.+
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence 9998555667888999999999999999888889999999999999999987654
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=2.8e-21 Score=162.18 Aligned_cols=235 Identities=17% Similarity=0.165 Sum_probs=166.8
Q ss_pred CCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccC-CCCCc
Q 047128 14 KNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIAD-TNLSG 92 (312)
Q Consensus 14 ~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~ 92 (312)
+-.++ .+|..+- +.-..++|..|+|+ .||+..|+.+++|+.||||+|+|+.+.|.+|.++++|..|.+-+ |+|+.
T Consensus 55 ~~GL~-eVP~~LP--~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 55 GKGLT-EVPANLP--PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred CCCcc-cCcccCC--CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 33444 4554432 34568999999999 99999999999999999999999999999999999987776655 99996
Q ss_pred ccchhhHhhcccccccccccccccccCCCCccc-----e-eeeeeeeeeecCcccchHHHhccccEEEcC----------
Q 047128 93 AIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVG-----V-ILVEKASVVSKGEMVDYEDILNLVRMIDIS---------- 156 (312)
Q Consensus 93 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls---------- 156 (312)
.....|+++..++.|.+.-|.+.-.....+... . .+......+..+. +..+..++.+.+.
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~t----f~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGT----FQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcccc----ccchhccchHhhhcCcccccccc
Confidence 666799999999999988877663322111100 0 0000011111100 0001111111111
Q ss_pred ---------------------------------------------------CCcccccCC-hhhhcCCCCCEEEccCCCC
Q 047128 157 ---------------------------------------------------RNNFSGKIP-LEVTNLKALHSLNFSYNSF 184 (312)
Q Consensus 157 ---------------------------------------------------~n~i~~~~p-~~~~~l~~L~~L~Ls~n~l 184 (312)
.....+.-| ..|..+++|++|+|++|++
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI 286 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence 111222333 4678999999999999999
Q ss_pred ccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC-CCCCCCccccccCCCCC
Q 047128 185 TRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-TQLQSFDVSSFAGNDLC 256 (312)
Q Consensus 185 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~l~~n~l~ 256 (312)
++.-+.+|.+...+++|.|..|++.......|..+..|+.|+|.+|+|++..|.. ..+..+..+.+-.|+++
T Consensus 287 ~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 287 TRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred chhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 9888999999999999999999999777778999999999999999999877765 45666777777777443
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.80 E-value=6.1e-22 Score=148.52 Aligned_cols=185 Identities=22% Similarity=0.396 Sum_probs=140.1
Q ss_pred cccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcc
Q 047128 24 SLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTG 103 (312)
Q Consensus 24 ~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 103 (312)
.+.++.+++.|.+++|+++ .+|..+. .+.+|+.|++++|+++ .+|..++.+++|+.|+++.|++. ..|..|+.++.
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia-~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~ 103 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIA-ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA 103 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHH-Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence 3455677777888888888 7787776 7888888888888887 67777888888888888888877 77888888888
Q ss_pred cccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCC
Q 047128 104 MVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNS 183 (312)
Q Consensus 104 L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~ 183 (312)
|+.+++.+|++... ..+.-|-.+..|+.|.+++|.+. .+|..++++++|+.|.+..|.
T Consensus 104 levldltynnl~e~---------------------~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 104 LEVLDLTYNNLNEN---------------------SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred hhhhhccccccccc---------------------cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence 88777777776521 12222334666888888899888 788888999999999999998
Q ss_pred CccccChhhcCCCCCcEEECCCccCCccCCccccCCCC---CCeEecccCcccccC
Q 047128 184 FTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTF---SNHLNLSNNNLTGKI 236 (312)
Q Consensus 184 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~---L~~L~l~~N~l~~~~ 236 (312)
+- ..|..++.++.|++|.+.+|.++ .+|..++.+.- =+.+.+.+|++..++
T Consensus 162 ll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 162 LL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred hh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 86 78888899999999999999998 77766655432 244667777765433
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=8.7e-19 Score=165.02 Aligned_cols=224 Identities=20% Similarity=0.305 Sum_probs=108.9
Q ss_pred CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEc
Q 047128 6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDI 85 (312)
Q Consensus 6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 85 (312)
+|+.|+|++|.++ .+|..+. ++|++|++++|.++ .+|..+. .+|+.|++++|+++ .+|..+. .+|++|++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 4666666666666 3443332 35666666666666 6665543 35666666666666 4555443 35666777
Q ss_pred cCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCC
Q 047128 86 ADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP 165 (312)
Q Consensus 86 ~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p 165 (312)
++|+++ .+|..+. .+|+.|++.+|.+.... ..+......+....+.... ++. ...++|+.|++++|.++. +|
T Consensus 270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP-~~lp~sL~~L~Ls~N~Lt~-LP~--~l~~sL~~L~Ls~N~Lt~-LP 341 (754)
T PRK15370 270 FHNKIS-CLPENLP--EELRYLSVYDNSIRTLP-AHLPSGITHLNVQSNSLTA-LPE--TLPPGLKTLEAGENALTS-LP 341 (754)
T ss_pred cCCccC-ccccccC--CCCcEEECCCCccccCc-ccchhhHHHHHhcCCcccc-CCc--cccccceeccccCCcccc-CC
Confidence 766666 3444332 35666666666655321 1111000000000000000 000 012345556666665552 44
Q ss_pred hhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC----CC
Q 047128 166 LEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS----TQ 241 (312)
Q Consensus 166 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~----~~ 241 (312)
..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|+++ .+|..+. ..|+.|++++|+++..+... ..
T Consensus 342 ~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~ 413 (754)
T PRK15370 342 ASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPHFRGE 413 (754)
T ss_pred hhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHHHhhc
Confidence 3332 45666666666655 444433 245666666666665 3444332 24555666666655332221 12
Q ss_pred CCCCccccccCCCC
Q 047128 242 LQSFDVSSFAGNDL 255 (312)
Q Consensus 242 l~~l~~~~l~~n~l 255 (312)
...+..+++.+|++
T Consensus 414 ~~~l~~L~L~~Npl 427 (754)
T PRK15370 414 GPQPTRIIVEYNPF 427 (754)
T ss_pred CCCccEEEeeCCCc
Confidence 23344455555544
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=1.5e-20 Score=172.55 Aligned_cols=240 Identities=23% Similarity=0.301 Sum_probs=153.5
Q ss_pred CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128 5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD 84 (312)
Q Consensus 5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 84 (312)
++|+.|+..+|.++...+. .--.+|++++++.|+++ .+|+++. .+.+|+.++..+|+++ .+|..+....+|+.|.
T Consensus 219 ~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~-~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~ 293 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIG-ACANLEALNANHNRLV-ALPLRISRITSLVSLS 293 (1081)
T ss_pred cchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHH-hcccceEecccchhHH-hhHHHHhhhhhHHHHH
Confidence 4455555556655422211 11234566666666666 5665555 5666666666666664 4555555555555555
Q ss_pred ccCCCCCcccchhhHhhcccccccccccccccccCCCCccc---------------------------eeeeeeeeeeec
Q 047128 85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVG---------------------------VILVEKASVVSK 137 (312)
Q Consensus 85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~ 137 (312)
+.+|.+. .+|.....+.+|++|++..|.+.......+... ...+....+...
T Consensus 294 ~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 294 AAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred hhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc
Confidence 5555554 344444445555555555554442211000000 000011111223
Q ss_pred CcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCcccc
Q 047128 138 GEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMS 217 (312)
Q Consensus 138 ~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 217 (312)
..+...+..+++|+.|++++|++.......+.++..|++|+||+|+++ .+|..+..++.|++|...+|++. ..| .+.
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~ 449 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELA 449 (1081)
T ss_pred ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhh
Confidence 344556677899999999999999555567789999999999999998 88999999999999999999999 778 688
Q ss_pred CCCCCCeEecccCccccc-CCCCCCCCCCccccccCC
Q 047128 218 SLTFSNHLNLSNNNLTGK-IPSSTQLQSFDVSSFAGN 253 (312)
Q Consensus 218 ~l~~L~~L~l~~N~l~~~-~~~~~~l~~l~~~~l~~n 253 (312)
.++.|+.+|++.|+++.. ++.....++|+.++++||
T Consensus 450 ~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred hcCcceEEecccchhhhhhhhhhCCCcccceeeccCC
Confidence 999999999999999853 333333378999999999
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.77 E-value=1.9e-20 Score=140.54 Aligned_cols=163 Identities=21% Similarity=0.377 Sum_probs=145.7
Q ss_pred CCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcE
Q 047128 3 SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQI 82 (312)
Q Consensus 3 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 82 (312)
.+++.+.|-|++|+++ .+|..++.+.+|+.|++++|+++ .+|..+. .++.|+.|++..|++. .+|..|+.+|.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhh
Confidence 4567788999999998 67778999999999999999999 9999998 8999999999999998 89999999999999
Q ss_pred EEccCCCCC-cccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccc
Q 047128 83 LDIADTNLS-GAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS 161 (312)
Q Consensus 83 L~l~~n~l~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~ 161 (312)
||+++|++. ..+|..|..+..|+.+++..|.+.- .+.....+++|+.|.+.+|.+-
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~-----------------------lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-----------------------LPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCccc-----------------------CChhhhhhcceeEEeeccCchh
Confidence 999999885 4789999999999999999998863 2444567889999999999998
Q ss_pred ccCChhhhcCCCCCEEEccCCCCccccChhhcC
Q 047128 162 GKIPLEVTNLKALHSLNFSYNSFTRRIPESIGV 194 (312)
Q Consensus 162 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 194 (312)
..|..++.+..|++|.+.+|+++ .+|..++.
T Consensus 164 -~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 164 -SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred -hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 79999999999999999999998 66665544
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.76 E-value=5.8e-18 Score=158.86 Aligned_cols=220 Identities=20% Similarity=0.210 Sum_probs=105.9
Q ss_pred cCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEcc
Q 047128 7 LVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIA 86 (312)
Q Consensus 7 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 86 (312)
|+.|++.+|+++. +|. .+++|++|++++|+++ .+|.. .++|+.|++++|.++ .+|.. ..+|+.|+++
T Consensus 224 L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls 290 (788)
T PRK15387 224 ITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIF 290 (788)
T ss_pred CCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc----ccccceeeccCCchh-hhhhc---hhhcCEEECc
Confidence 4455555555542 232 1345555555555555 44421 234444444444444 22221 1345555555
Q ss_pred CCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCCh
Q 047128 87 DTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL 166 (312)
Q Consensus 87 ~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~ 166 (312)
+|+++ .+|. ..++|+.|++.+|.+......+.... .+....+... .++ ..+.+|++|++++|++++ +|.
T Consensus 291 ~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~lp~~L~--~L~Ls~N~L~-~LP---~lp~~Lq~LdLS~N~Ls~-LP~ 359 (788)
T PRK15387 291 GNQLT-SLPV---LPPGLQELSVSDNQLASLPALPSELC--KLWAYNNQLT-SLP---TLPSGLQELSVSDNQLAS-LPT 359 (788)
T ss_pred CCccc-cccc---cccccceeECCCCccccCCCCccccc--ccccccCccc-ccc---ccccccceEecCCCccCC-CCC
Confidence 55555 3332 23556666776666654322111100 0000000000 011 112356677777777663 332
Q ss_pred hhh-----------------cCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEeccc
Q 047128 167 EVT-----------------NLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSN 229 (312)
Q Consensus 167 ~~~-----------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 229 (312)
... ...+|+.|++++|+++ .+|.. .++|+.|++++|+++ .+|.. ..+|+.|++++
T Consensus 360 lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~ 431 (788)
T PRK15387 360 LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYR 431 (788)
T ss_pred CCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhcc
Confidence 111 1124555555555555 34432 245666666666666 34542 23566677777
Q ss_pred CcccccCCCCCCCCCCccccccCCCCCCC
Q 047128 230 NNLTGKIPSSTQLQSFDVSSFAGNDLCGA 258 (312)
Q Consensus 230 N~l~~~~~~~~~l~~l~~~~l~~n~l~~~ 258 (312)
|+++..+.....+.++..+++++|++++.
T Consensus 432 NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 432 NQLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred CcccccChHHhhccCCCeEECCCCCCCch
Confidence 77765444446677777788888877754
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=4e-18 Score=160.55 Aligned_cols=206 Identities=21% Similarity=0.347 Sum_probs=151.9
Q ss_pred CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128 5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD 84 (312)
Q Consensus 5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 84 (312)
++|++|++++|.++ .+|..+. ++|+.|++++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|++|+
T Consensus 220 ~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~ 289 (754)
T PRK15370 220 GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLS 289 (754)
T ss_pred cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEE
Confidence 57999999999998 4565553 47999999999999 9998875 58999999999999 5777664 5899999
Q ss_pred ccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccC
Q 047128 85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI 164 (312)
Q Consensus 85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~ 164 (312)
+++|+++ .+|..+. ..|+.|++.+|.+... +.........+....+.... ++.. ..++|+.|++++|+++ .+
T Consensus 290 Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~L-P~~l~~sL~~L~Ls~N~Lt~-LP~~--l~~sL~~L~Ls~N~L~-~L 361 (754)
T PRK15370 290 VYDNSIR-TLPAHLP--SGITHLNVQSNSLTAL-PETLPPGLKTLEAGENALTS-LPAS--LPPELQVLDVSKNQIT-VL 361 (754)
T ss_pred CCCCccc-cCcccch--hhHHHHHhcCCccccC-CccccccceeccccCCcccc-CChh--hcCcccEEECCCCCCC-cC
Confidence 9999998 4554432 4688888999888753 22222111111111111111 1211 1368999999999998 56
Q ss_pred ChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccc----cCCCCCCeEecccCcccc
Q 047128 165 PLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESM----SSLTFSNHLNLSNNNLTG 234 (312)
Q Consensus 165 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~----~~l~~L~~L~l~~N~l~~ 234 (312)
|..+ .++|++|++++|+++ .+|..+. ..|+.|++++|+++ .+|..+ ...+.+..+++.+|+++.
T Consensus 362 P~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 362 PETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred Chhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 7655 379999999999998 6776654 47999999999998 666544 345888999999999873
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=8.2e-17 Score=160.78 Aligned_cols=244 Identities=18% Similarity=0.211 Sum_probs=140.8
Q ss_pred CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128 4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL 83 (312)
Q Consensus 4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 83 (312)
..+|++|++++|.+. ..+..+..+++|++++++++...+.+|. +. .+++|+.|++++|.....+|..+..+++|+.|
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls-~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LS-MATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cc-cCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 467888888888876 5666777788888888887654447774 33 67888888888876555777778888888888
Q ss_pred EccCCCCCcccchhhHhhcccccccccccccccccCCCCc-ccee-----------------eeeeeeeee---------
Q 047128 84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPID-VGVI-----------------LVEKASVVS--------- 136 (312)
Q Consensus 84 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~-----------------~~~~~~~~~--------- 136 (312)
++++|..-..+|..+ ++++|+.|++.+|......+.... .... .+..+....
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcccc
Confidence 888764333555543 567777777766643322211000 0000 000000000
Q ss_pred -cCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEE--------------
Q 047128 137 -KGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESI-------------- 201 (312)
Q Consensus 137 -~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L-------------- 201 (312)
....+.....+++|+.|++++|.....+|..+.++++|+.|++++|..-+.+|... .+++|+.|
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc
Confidence 00001111224567788888877666777778888888888888764323555433 34444444
Q ss_pred -------ECCCccCCccCCccccCCCCCCeEeccc-CcccccCCCCCCCCCCccccccCC
Q 047128 202 -------DFSTNQLSGEIPESMSSLTFSNHLNLSN-NNLTGKIPSSTQLQSFDVSSFAGN 253 (312)
Q Consensus 202 -------~l~~N~l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~~~~~~l~~l~~~~l~~n 253 (312)
++++|.++ .+|.++..+++|+.|++++ |++.+.++....+++++.+++.++
T Consensus 845 ~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 845 STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 44445554 4455555555566665554 344443333344555555555555
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.72 E-value=9.5e-17 Score=160.32 Aligned_cols=242 Identities=17% Similarity=0.193 Sum_probs=154.1
Q ss_pred cCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEcc
Q 047128 7 LVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIA 86 (312)
Q Consensus 7 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 86 (312)
|+.|.+.++.++ ..|..| ...+|++|++++|.+. .++.++. .+++|+.|+++++.....+|. +..+++|++|+++
T Consensus 591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~-~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~ 665 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVH-SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS 665 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccc-cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEec
Confidence 555555555554 445444 3567888888888887 7777765 788888888887764446664 7778889999998
Q ss_pred CCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCCh
Q 047128 87 DTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL 166 (312)
Q Consensus 87 ~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~ 166 (312)
+|.....+|..+..+++|+.|++.+|.....++..+. ...+..+..........+.....+|+.|++++|.+. .+|.
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~--l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~ 742 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN--LKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPS 742 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCC--CCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccc
Confidence 8765567888888899999999888754444443321 111111111111111111122456778888888776 3443
Q ss_pred hh------------------------------hcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccc
Q 047128 167 EV------------------------------TNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESM 216 (312)
Q Consensus 167 ~~------------------------------~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~ 216 (312)
.+ ...++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+
T Consensus 743 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~ 822 (1153)
T PLN03210 743 NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI 822 (1153)
T ss_pred cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence 22 112467777777776555677777788888888888765433666654
Q ss_pred cCCCCCCeEecccCcccccCCCCCCCCCCccccccCCCCCCCC
Q 047128 217 SSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAP 259 (312)
Q Consensus 217 ~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~~p 259 (312)
.+++|+.|++++|.....+|.. ..+++.+++.+|.+...|
T Consensus 823 -~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~~iP 862 (1153)
T PLN03210 823 -NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIEEVP 862 (1153)
T ss_pred -CccccCEEECCCCCcccccccc--ccccCEeECCCCCCccCh
Confidence 5777888888876544444432 356777788888776655
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.71 E-value=4.5e-17 Score=152.90 Aligned_cols=206 Identities=22% Similarity=0.274 Sum_probs=128.9
Q ss_pred CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128 4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL 83 (312)
Q Consensus 4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 83 (312)
.++|++|++++|+++. +|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|+++ .+|.. .++|+.|
T Consensus 241 p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~-~Lp~l----p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~L 307 (788)
T PRK15387 241 PPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLT-HLPAL----PSGLCKLWIFGNQLT-SLPVL---PPGLQEL 307 (788)
T ss_pred CCCCcEEEecCCccCc-ccCc---ccccceeeccCCchh-hhhhc----hhhcCEEECcCCccc-ccccc---cccccee
Confidence 4688999999999984 4532 346667777777666 55542 234555555555555 33321 2445555
Q ss_pred EccCCCCCcccchhhH-----------------hhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHH
Q 047128 84 DIADTNLSGAIPNWIN-----------------NLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDI 146 (312)
Q Consensus 84 ~l~~n~l~~~~~~~~~-----------------~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (312)
++++|.++. +|.... ...+|+.|++.+|.+........ ....+....+... .++ ..
T Consensus 308 dLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~lp~--~L~~L~Ls~N~L~-~LP---~l 380 (788)
T PRK15387 308 SVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPS--ELYKLWAYNNRLT-SLP---AL 380 (788)
T ss_pred ECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccCCCCCCCc--ccceehhhccccc-cCc---cc
Confidence 555555542 221100 01356667777776664322111 1111111111111 111 22
Q ss_pred hccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEe
Q 047128 147 LNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLN 226 (312)
Q Consensus 147 ~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ 226 (312)
+.+|+.|++++|.+++ +|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|..+..++.|+.++
T Consensus 381 ~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 381 PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVN 451 (788)
T ss_pred ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEE
Confidence 4579999999999994 5543 368999999999998 57763 357899999999999 7899999999999999
Q ss_pred cccCcccccCCC
Q 047128 227 LSNNNLTGKIPS 238 (312)
Q Consensus 227 l~~N~l~~~~~~ 238 (312)
+++|++++..+.
T Consensus 452 Ls~N~Ls~~~~~ 463 (788)
T PRK15387 452 LEGNPLSERTLQ 463 (788)
T ss_pred CCCCCCCchHHH
Confidence 999999976543
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.70 E-value=1.5e-19 Score=166.06 Aligned_cols=244 Identities=20% Similarity=0.252 Sum_probs=189.2
Q ss_pred CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128 2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ 81 (312)
Q Consensus 2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 81 (312)
..+.+|+.+....|+++... ..-++|+.|+.++|.++ .+.... .-.+|+.++++.|+++ .+|+.+..+.+|+
T Consensus 196 s~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~-~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~~~~nle 267 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLT-TLDVHP--VPLNLQYLDISHNNLS-NLPEWIGACANLE 267 (1081)
T ss_pred hhccchhhhhhhhcccceEE----ecCcchheeeeccCcce-eecccc--ccccceeeecchhhhh-cchHHHHhcccce
Confidence 35677788888888876432 23467999999999998 433332 3578999999999999 6788899999999
Q ss_pred EEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccce-eeeeeeeeeecC---------------------c
Q 047128 82 ILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGV-ILVEKASVVSKG---------------------E 139 (312)
Q Consensus 82 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------------~ 139 (312)
.++..+|.+. .+|..+....+|+.+.+..|.+....+....... ..++.-.+.... .
T Consensus 268 ~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~ 346 (1081)
T KOG0618|consen 268 ALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK 346 (1081)
T ss_pred EecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc
Confidence 9999999996 8888999999999999999998876655543221 111111111000 0
Q ss_pred c---c-chHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccCh-hhcCCCCCcEEECCCccCCccCCc
Q 047128 140 M---V-DYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPE-SIGVMTSLESIDFSTNQLSGEIPE 214 (312)
Q Consensus 140 ~---~-~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~l~~N~l~~~~p~ 214 (312)
. + .-...++.|+.|.+.+|.+++..-..+.+.++|+.|+|++|++. .+|+ .+.+++.|++|++|+|+++ .+|+
T Consensus 347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~ 424 (1081)
T KOG0618|consen 347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPD 424 (1081)
T ss_pred ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhH
Confidence 0 0 01123456888999999998777778889999999999999998 5555 5689999999999999999 8999
Q ss_pred cccCCCCCCeEecccCcccccCCCCCCCCCCccccccCCCCCC
Q 047128 215 SMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCG 257 (312)
Q Consensus 215 ~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~ 257 (312)
.+..++.|++|...+|++...+ ...++..++.+|++.|.+..
T Consensus 425 tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 425 TVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred HHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhh
Confidence 9999999999999999999655 77889999999999996654
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=2.1e-18 Score=149.91 Aligned_cols=236 Identities=17% Similarity=0.168 Sum_probs=144.4
Q ss_pred CCCcCEEECCCCccccc----ccccccCCCCCCEEECcCCCCCC------CCChhHHhcCCCCcEEEccCCcccccCCcC
Q 047128 4 LTSLVWLRLGKNKLSVD----ILVSLKNCTTLESLDVGENEFVG------NIPTWIGERFSRMVVLILRSNKFHGPLPTR 73 (312)
Q Consensus 4 l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l~~------~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~ 73 (312)
++.|++++++++.++.. ++..+...+.+++++++++.+.+ .++..+. .+++|+.|++++|.+....+..
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT-KGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH-hcCceeEEEccCCCCChhHHHH
Confidence 45677888888877432 34456667778888888877651 1222333 5678888888888876444444
Q ss_pred CCCCCC---CcEEEccCCCCCc----ccchhhHhh-cccccccccccccccccCCCCccceeeeeeeeeeecCcccchHH
Q 047128 74 LCDLPF---LQILDIADTNLSG----AIPNWINNL-TGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYED 145 (312)
Q Consensus 74 ~~~l~~---L~~L~l~~n~l~~----~~~~~~~~l-~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (312)
+..+.. |++|++++|.+.. .+...+..+ ++|+.+++.+|.+..... ......+.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~------------------~~~~~~~~ 162 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC------------------EALAKALR 162 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH------------------HHHHHHHH
Confidence 443433 8888888887763 122334455 677777777777652110 01122334
Q ss_pred HhccccEEEcCCCccccc----CChhhhcCCCCCEEEccCCCCccc----cChhhcCCCCCcEEECCCccCCccCCcccc
Q 047128 146 ILNLVRMIDISRNNFSGK----IPLEVTNLKALHSLNFSYNSFTRR----IPESIGVMTSLESIDFSTNQLSGEIPESMS 217 (312)
Q Consensus 146 ~~~~L~~L~ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 217 (312)
.+++|++|++++|.+++. ++..+...++|++|++++|.+++. ++..+..+++|++|++++|.+++.....+.
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 242 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA 242 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence 456788888888887742 233445556888888888887633 233445667888888888888753322222
Q ss_pred -----CCCCCCeEecccCcccc--c---CCCCCCCCCCccccccCCCCCCC
Q 047128 218 -----SLTFSNHLNLSNNNLTG--K---IPSSTQLQSFDVSSFAGNDLCGA 258 (312)
Q Consensus 218 -----~l~~L~~L~l~~N~l~~--~---~~~~~~l~~l~~~~l~~n~l~~~ 258 (312)
..+.|++|++++|.++. . ......+.+++.+++++|.+...
T Consensus 243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 23678888888888761 1 11113346677778888866644
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=1.7e-17 Score=144.19 Aligned_cols=213 Identities=20% Similarity=0.219 Sum_probs=154.2
Q ss_pred CCCCcCEEECCCCccc------ccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCC---CcEEEccCCcccc----c
Q 047128 3 SLTSLVWLRLGKNKLS------VDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSR---MVVLILRSNKFHG----P 69 (312)
Q Consensus 3 ~l~~L~~L~L~~n~i~------~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~---L~~L~L~~n~l~~----~ 69 (312)
..+++++++++++.+. ..++..+..+++|++|++++|.+.+..+..+. .+.. |++|++++|++.. .
T Consensus 49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~~~~L~~L~ls~~~~~~~~~~~ 127 (319)
T cd00116 49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE-SLLRSSSLQELKLNNNGLGDRGLRL 127 (319)
T ss_pred hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH-HHhccCcccEEEeeCCccchHHHHH
Confidence 4677999999999876 23445677899999999999999855555544 4554 9999999999873 2
Q ss_pred CCcCCCCC-CCCcEEEccCCCCCcc----cchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchH
Q 047128 70 LPTRLCDL-PFLQILDIADTNLSGA----IPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYE 144 (312)
Q Consensus 70 ~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (312)
+...+..+ ++|+.|++++|.+++. .+..+..++.|+.+++.+|.+..... ......+
T Consensus 128 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~------------------~~l~~~l 189 (319)
T cd00116 128 LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI------------------RALAEGL 189 (319)
T ss_pred HHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH------------------HHHHHHH
Confidence 23345566 8999999999998843 33456677789999999887753100 0011122
Q ss_pred HHhccccEEEcCCCcccccC----ChhhhcCCCCCEEEccCCCCccccChhhc-----CCCCCcEEECCCccCCcc----
Q 047128 145 DILNLVRMIDISRNNFSGKI----PLEVTNLKALHSLNFSYNSFTRRIPESIG-----VMTSLESIDFSTNQLSGE---- 211 (312)
Q Consensus 145 ~~~~~L~~L~ls~n~i~~~~----p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~l~~N~l~~~---- 211 (312)
...++|+.|++++|.+++.. +..+..+++|++|++++|.+++.....+. ..+.|++|++++|.++..
T Consensus 190 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 269 (319)
T cd00116 190 KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKD 269 (319)
T ss_pred HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHH
Confidence 33458999999999987443 34456788999999999999753332222 247999999999999722
Q ss_pred CCccccCCCCCCeEecccCcccc
Q 047128 212 IPESMSSLTFSNHLNLSNNNLTG 234 (312)
Q Consensus 212 ~p~~~~~l~~L~~L~l~~N~l~~ 234 (312)
+...+...++|+++++++|+++.
T Consensus 270 l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 270 LAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHHHHhcCCCccEEECCCCCCcH
Confidence 33445567899999999999984
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.67 E-value=4.9e-16 Score=145.52 Aligned_cols=117 Identities=37% Similarity=0.640 Sum_probs=103.3
Q ss_pred cccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecc
Q 047128 149 LVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLS 228 (312)
Q Consensus 149 ~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 228 (312)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|++++.+|+.++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCC-C-CCCCCccccccCC-CCCCCCCCCCCC
Q 047128 229 NNNLTGKIPSS-T-QLQSFDVSSFAGN-DLCGAPIPKNCT 265 (312)
Q Consensus 229 ~N~l~~~~~~~-~-~l~~l~~~~l~~n-~l~~~p~~~~c~ 265 (312)
+|+++|.+|.. . ...++..+++.+| .+|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999988865 2 2334556778888 688877655664
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.55 E-value=1.2e-16 Score=140.27 Aligned_cols=181 Identities=24% Similarity=0.406 Sum_probs=126.7
Q ss_pred CCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhccccc
Q 047128 27 NCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT 106 (312)
Q Consensus 27 ~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 106 (312)
.+..-...|++.|++. .+|..+. .+..|+.+.+..|.+. .+|..++.+..|+++|++.|+++ .+|..+..++ |+.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~-~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEAC-AFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV 147 (722)
T ss_pred cccchhhhhccccccc-cCchHHH-HHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence 3444456677777777 7777765 5677777777777777 66677777777777777777776 5555554443 444
Q ss_pred ccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCcc
Q 047128 107 SCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTR 186 (312)
Q Consensus 107 l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~ 186 (312)
+.+.+|.+... +........|..||.+.|.+. ..|..++.+.+|+.|++..|++.
T Consensus 148 li~sNNkl~~l-----------------------p~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~- 202 (722)
T KOG0532|consen 148 LIVSNNKLTSL-----------------------PEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE- 202 (722)
T ss_pred EEEecCccccC-----------------------CcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-
Confidence 44444443321 111112455777888888888 67777888888888888888887
Q ss_pred ccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC
Q 047128 187 RIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS 239 (312)
Q Consensus 187 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~ 239 (312)
.+|..+..++ |..||++.|+++ .+|-.|..|.+|++|.|.+|++..++...
T Consensus 203 ~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 203 DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 7777777554 788888988888 78888888888888888888888665544
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.53 E-value=1.8e-16 Score=139.19 Aligned_cols=192 Identities=25% Similarity=0.369 Sum_probs=153.7
Q ss_pred cCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEcc
Q 047128 7 LVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIA 86 (312)
Q Consensus 7 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 86 (312)
-...||+.|++. .+|..+..+..|+.+.+..|.+. .+|..+. .+..|+.+|++.|++. .+|..++.++ |+.|.++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~-~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAIC-NLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhh-hhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 346788888887 67777777777888888889888 8888887 7889999999999988 7888888777 8888899
Q ss_pred CCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCCh
Q 047128 87 DTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL 166 (312)
Q Consensus 87 ~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~ 166 (312)
+|+++ .+|+.++.+..|..++...|.+... +.-...+.+|+.|.+.+|++. .+|+
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~sl-----------------------psql~~l~slr~l~vrRn~l~-~lp~ 206 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQSL-----------------------PSQLGYLTSLRDLNVRRNHLE-DLPE 206 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhhhc-----------------------hHHhhhHHHHHHHHHhhhhhh-hCCH
Confidence 99888 7788888888888888888876532 222344667888999999999 6777
Q ss_pred hhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCC---CCeEecccCc
Q 047128 167 EVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTF---SNHLNLSNNN 231 (312)
Q Consensus 167 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~---L~~L~l~~N~ 231 (312)
.+. .-.|..||+|.|++. .+|-.|.++..|++|-|.+|.+. ..|..+..... -++|+.+-++
T Consensus 207 El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 207 ELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred HHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 776 456889999999998 99999999999999999999999 77777654333 3556666554
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.48 E-value=5.2e-14 Score=125.96 Aligned_cols=199 Identities=33% Similarity=0.502 Sum_probs=146.8
Q ss_pred EEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCC-CCcEEEccCCcccccCCcCCCCCCCCcEEEccC
Q 047128 9 WLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFS-RMVVLILRSNKFHGPLPTRLCDLPFLQILDIAD 87 (312)
Q Consensus 9 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 87 (312)
.+++..+.+.. ....+..++.++.+++.+|.++ .++.... .+. +|+.|++++|.+. .+|..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~-~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIG-LLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccc-cchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 46777777642 2334555677888888888888 8887765 453 8888888888888 5656678888888888888
Q ss_pred CCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChh
Q 047128 88 TNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLE 167 (312)
Q Consensus 88 n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~ 167 (312)
|++. .+|......+.|+.+++++|.+..... ....+..|+++.+++|.+. ..+..
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~-----------------------~~~~~~~L~~l~~~~N~~~-~~~~~ 227 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKISDLPP-----------------------EIELLSALEELDLSNNSII-ELLSS 227 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccccCch-----------------------hhhhhhhhhhhhhcCCcce-ecchh
Confidence 8887 555555578888888888887764322 1123445888888888655 45666
Q ss_pred hhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC
Q 047128 168 VTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS 239 (312)
Q Consensus 168 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~ 239 (312)
+.++.++..+.+.+|++. ..+..++.+++++.|++++|.++ .++. +..+.+++.+++++|.+....+..
T Consensus 228 ~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 228 LSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred hhhcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence 788888888888888886 55677778888999999999988 4544 778888999999998887655544
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.45 E-value=1.2e-13 Score=123.67 Aligned_cols=195 Identities=25% Similarity=0.366 Sum_probs=159.2
Q ss_pred EEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCC-CCcEEEccCCCCCcccchhhHhhcccccccccc
Q 047128 33 SLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLP-FLQILDIADTNLSGAIPNWINNLTGMVTSCSFT 111 (312)
Q Consensus 33 ~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~ 111 (312)
.+++..|.+. .-...+. .++.++.|++.+|+++ .++....... +|+.|++++|.+. .+|.....++.|+.|++..
T Consensus 97 ~l~~~~~~~~-~~~~~~~-~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLR-SNISELL-ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccc-cCchhhh-cccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 6888999885 3344444 6789999999999999 6777677774 9999999999998 6667789999999999999
Q ss_pred cccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChh
Q 047128 112 RSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPES 191 (312)
Q Consensus 112 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 191 (312)
|.+..... .....+.|+.|++++|+++ .+|.....+..|+++.+++|.+. ..+..
T Consensus 173 N~l~~l~~-----------------------~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~ 227 (394)
T COG4886 173 NDLSDLPK-----------------------LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSS 227 (394)
T ss_pred chhhhhhh-----------------------hhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchh
Confidence 99875432 1114677999999999999 67766566677999999999654 56777
Q ss_pred hcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCccccccCCCCCCC
Q 047128 192 IGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGA 258 (312)
Q Consensus 192 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~~ 258 (312)
+..+.++..+.+.+|++. ..+..++.++.++.|++++|+++.... ...+.+++.+++++|.+...
T Consensus 228 ~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 228 LSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred hhhcccccccccCCceee-eccchhccccccceecccccccccccc-ccccCccCEEeccCcccccc
Confidence 889999999999999998 557778889999999999999996555 77888899999999866543
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=5.5e-13 Score=114.11 Aligned_cols=207 Identities=21% Similarity=0.240 Sum_probs=149.6
Q ss_pred CCCCcCEEECCCCccccccc--ccccCCCCCCEEECcCCCCCCCCC-hhHHhcCCCCcEEEccCCcccccCCcC-CCCCC
Q 047128 3 SLTSLVWLRLGKNKLSVDIL--VSLKNCTTLESLDVGENEFVGNIP-TWIGERFSRMVVLILRSNKFHGPLPTR-LCDLP 78 (312)
Q Consensus 3 ~l~~L~~L~L~~n~i~~~~~--~~l~~l~~L~~L~l~~n~l~~~lp-~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~ 78 (312)
++.+|+.+.|.+..+. ..+ .....+++++.|||+.|-+...-+ ..+.+.+++|+.|+++.|++.....+. -..++
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 5778999999999886 333 467789999999999998873222 234558999999999999987322221 24678
Q ss_pred CCcEEEccCCCCCcccch-hhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCC
Q 047128 79 FLQILDIADTNLSGAIPN-WINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISR 157 (312)
Q Consensus 79 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~ 157 (312)
.|+.|.++.+.++...-. ....+|+|..|++..|...... ......++.|+.|||++
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~----------------------~~~~~i~~~L~~LdLs~ 255 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK----------------------ATSTKILQTLQELDLSN 255 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee----------------------cchhhhhhHHhhccccC
Confidence 899999999998744333 4567899999999988521110 11223466799999999
Q ss_pred CcccccCC--hhhhcCCCCCEEEccCCCCccc-cChh-----hcCCCCCcEEECCCccCCccCCc--cccCCCCCCeEec
Q 047128 158 NNFSGKIP--LEVTNLKALHSLNFSYNSFTRR-IPES-----IGVMTSLESIDFSTNQLSGEIPE--SMSSLTFSNHLNL 227 (312)
Q Consensus 158 n~i~~~~p--~~~~~l~~L~~L~Ls~n~l~~~-~p~~-----~~~l~~L~~L~l~~N~l~~~~p~--~~~~l~~L~~L~l 227 (312)
|++-. .+ ...+.++.|+.|+++.+.+... .|+. ....++|+.|+++.|++. ..+. .+..+++|+.+.+
T Consensus 256 N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 256 NNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred Ccccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhc
Confidence 99873 33 3567889999999999988732 2332 346789999999999997 4443 3456788888888
Q ss_pred ccCcccc
Q 047128 228 SNNNLTG 234 (312)
Q Consensus 228 ~~N~l~~ 234 (312)
..|.++.
T Consensus 334 ~~n~ln~ 340 (505)
T KOG3207|consen 334 TLNYLNK 340 (505)
T ss_pred ccccccc
Confidence 8888874
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.30 E-value=3.4e-12 Score=99.38 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=11.0
Q ss_pred CCCCCEEEccCCCCcccc-ChhhcCCCCCcEEECCCccCC
Q 047128 171 LKALHSLNFSYNSFTRRI-PESIGVMTSLESIDFSTNQLS 209 (312)
Q Consensus 171 l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~l~~N~l~ 209 (312)
+++|++|++++|+|...- -..+..+++|+.|++.+|.++
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 444444444444443110 112334455555555555544
No 30
>PLN03150 hypothetical protein; Provisional
Probab=99.29 E-value=1.2e-11 Score=116.20 Aligned_cols=91 Identities=34% Similarity=0.604 Sum_probs=81.5
Q ss_pred hccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCC-CCCCeE
Q 047128 147 LNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSL-TFSNHL 225 (312)
Q Consensus 147 ~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l-~~L~~L 225 (312)
+++|+.|++++|.+++.+|..+..+++|+.|+|++|++++.+|..++.+++|+.|++++|++++.+|..+... .++..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 4458889999999999999999999999999999999999999999999999999999999999999988653 567889
Q ss_pred ecccCcccccCC
Q 047128 226 NLSNNNLTGKIP 237 (312)
Q Consensus 226 ~l~~N~l~~~~~ 237 (312)
++++|...|..|
T Consensus 521 ~~~~N~~lc~~p 532 (623)
T PLN03150 521 NFTDNAGLCGIP 532 (623)
T ss_pred EecCCccccCCC
Confidence 999998776544
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.26 E-value=1.2e-11 Score=96.32 Aligned_cols=126 Identities=25% Similarity=0.339 Sum_probs=40.9
Q ss_pred ccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhh-Hhhcc
Q 047128 25 LKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWI-NNLTG 103 (312)
Q Consensus 25 l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~ 103 (312)
+.+...+++|+|++|.|+ .+. .+...+.+|+.|++++|.++. + +.+..+++|++|++++|+++.. .+.+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence 345556788888888888 664 344357788888999888883 4 3577888888999998888743 3333 23444
Q ss_pred cccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccC-ChhhhcCCCCCEEEccCC
Q 047128 104 MVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI-PLEVTNLKALHSLNFSYN 182 (312)
Q Consensus 104 L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~-p~~~~~l~~L~~L~Ls~n 182 (312)
|+.|++++|+|.... -..+..+++|+.|++.+|
T Consensus 90 ----------------------------------------------L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 90 ----------------------------------------------LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp ------------------------------------------------EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred ----------------------------------------------CCEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 555666666665321 134556677777777777
Q ss_pred CCccccCh----hhcCCCCCcEEE
Q 047128 183 SFTRRIPE----SIGVMTSLESID 202 (312)
Q Consensus 183 ~l~~~~p~----~~~~l~~L~~L~ 202 (312)
.+. ..+. .+..+|+|+.||
T Consensus 124 Pv~-~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 124 PVC-EKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp GGG-GSTTHHHHHHHH-TT-SEET
T ss_pred ccc-chhhHHHHHHHHcChhheeC
Confidence 765 2222 245566676665
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.25 E-value=1.9e-12 Score=106.13 Aligned_cols=203 Identities=14% Similarity=0.176 Sum_probs=101.3
Q ss_pred ccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccC-CCCCcccchhhHhhcc
Q 047128 25 LKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIAD-TNLSGAIPNWINNLTG 103 (312)
Q Consensus 25 l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~ 103 (312)
+.-+++|+.+.++.+.-. .|-.-.. .-|.|+++..++..++ ..|. +-++..+...-.+. ...+|........+..
T Consensus 210 l~~f~~l~~~~~s~~~~~-~i~~~~~-~kptl~t~~v~~s~~~-~~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~ 285 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTE-NIVDIEL-LKPTLQTICVHNTTIQ-DVPS-LLPETILADPSGSEPSTSNGSALVSADTWQE 285 (490)
T ss_pred hHHhhhhheeeeeccchh-heeceee-cCchhheeeeeccccc-cccc-ccchhhhcCccCCCCCccCCceEEecchHhh
Confidence 334566777777776544 3332221 3467777777666554 2221 11122221111111 1112222223333444
Q ss_pred cccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCC
Q 047128 104 MVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNS 183 (312)
Q Consensus 104 L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~ 183 (312)
|+.+++++|.+...- ....-.+.++.|+++.|.+. ... .+..+++|++||||+|.
T Consensus 286 LtelDLS~N~I~~iD-----------------------ESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~ 340 (490)
T KOG1259|consen 286 LTELDLSGNLITQID-----------------------ESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNL 340 (490)
T ss_pred hhhccccccchhhhh-----------------------hhhhhccceeEEecccccee-eeh-hhhhcccceEeecccch
Confidence 445555554443211 11122345666777777666 222 25566677777777776
Q ss_pred CccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccc--cCCCCCCCCCCccccccCCCCCCCC
Q 047128 184 FTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG--KIPSSTQLQSFDVSSFAGNDLCGAP 259 (312)
Q Consensus 184 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~--~~~~~~~l~~l~~~~l~~n~l~~~p 259 (312)
++ .+..+-.++.+.++|.+++|.+. ... .+..+-+|..||+++|+|.. .+..++.++.++.+.+.+|++.+.|
T Consensus 341 Ls-~~~Gwh~KLGNIKtL~La~N~iE-~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 341 LA-ECVGWHLKLGNIKTLKLAQNKIE-TLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hH-hhhhhHhhhcCEeeeehhhhhHh-hhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 65 44444445566667777776665 222 24455566666777776653 2334455666666666666665544
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.22 E-value=2.8e-12 Score=106.98 Aligned_cols=235 Identities=15% Similarity=0.169 Sum_probs=157.6
Q ss_pred CCCCcCEEECCCCccccc----ccccccCCCCCCEEECcCC---CCCCCCChhHH------hcCCCCcEEEccCCccccc
Q 047128 3 SLTSLVWLRLGKNKLSVD----ILVSLKNCTTLESLDVGEN---EFVGNIPTWIG------ERFSRMVVLILRSNKFHGP 69 (312)
Q Consensus 3 ~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n---~l~~~lp~~~~------~~l~~L~~L~L~~n~l~~~ 69 (312)
.+..+++++|++|.+... +...+...++|+..++++- +....+|+.+- .+.+.|+.|+||.|.+...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 466788999999998632 3455677888999988873 22235554321 1567899999999998744
Q ss_pred CCcC----CCCCCCCcEEEccCCCCCcccchh-------------hHhhcccccccccccccccccCCCCccceeeeeee
Q 047128 70 LPTR----LCDLPFLQILDIADTNLSGAIPNW-------------INNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKA 132 (312)
Q Consensus 70 ~~~~----~~~l~~L~~L~l~~n~l~~~~~~~-------------~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~ 132 (312)
.+.. +..+..|++|+|.+|.+...-... ...-+.|+.+....|++...-
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~g-------------- 173 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGG-------------- 173 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccccc--------------
Confidence 4333 456788999999999875322212 123345666666666654211
Q ss_pred eeeecCcccchHHHhccccEEEcCCCccccc----CChhhhcCCCCCEEEccCCCCccc----cChhhcCCCCCcEEECC
Q 047128 133 SVVSKGEMVDYEDILNLVRMIDISRNNFSGK----IPLEVTNLKALHSLNFSYNSFTRR----IPESIGVMTSLESIDFS 204 (312)
Q Consensus 133 ~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~l~ 204 (312)
.....-.++..+.|+.+.+..|.|... ...++..+++|+.|||..|.++.. +...++.++.|++++++
T Consensus 174 ----a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 174 ----ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ----HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 111233455567888899988888522 234677889999999999998732 33456678899999999
Q ss_pred CccCCccCCccc-----cCCCCCCeEecccCccccc-----CCCCCCCCCCccccccCCCC
Q 047128 205 TNQLSGEIPESM-----SSLTFSNHLNLSNNNLTGK-----IPSSTQLQSFDVSSFAGNDL 255 (312)
Q Consensus 205 ~N~l~~~~p~~~-----~~l~~L~~L~l~~N~l~~~-----~~~~~~l~~l~~~~l~~n~l 255 (312)
++.+.......| ...|+|+++.+.+|.|+.. .......+.+..+++++|++
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 999885544333 3478899999999988741 11113367788888999977
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=6.1e-12 Score=107.81 Aligned_cols=186 Identities=16% Similarity=0.136 Sum_probs=136.2
Q ss_pred CCCCcCEEECCCCccccc--ccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCccccc-CCcCCCCCCC
Q 047128 3 SLTSLVWLRLGKNKLSVD--ILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGP-LPTRLCDLPF 79 (312)
Q Consensus 3 ~l~~L~~L~L~~n~i~~~--~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~ 79 (312)
.|++++.|||+.|-+..- +......+++|+.|+++.|++.....+.....+.+|+.|.++.|.++.. +......+|+
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 589999999999987632 3345567999999999999987333333333578999999999998832 1223467899
Q ss_pred CcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCc
Q 047128 80 LQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNN 159 (312)
Q Consensus 80 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~ 159 (312)
|+.|++..|............+..|+.|++.+|++-..-.. .....++.|+.|+++.+.
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~---------------------~~~~~l~~L~~Lnls~tg 282 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG---------------------YKVGTLPGLNQLNLSSTG 282 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc---------------------cccccccchhhhhccccC
Confidence 99999999964435555677888899999999886532211 112346779999999999
Q ss_pred cccc-CChh-----hhcCCCCCEEEccCCCCccccC--hhhcCCCCCcEEECCCccCCc
Q 047128 160 FSGK-IPLE-----VTNLKALHSLNFSYNSFTRRIP--ESIGVMTSLESIDFSTNQLSG 210 (312)
Q Consensus 160 i~~~-~p~~-----~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~l~~N~l~~ 210 (312)
+.+. .|+. ...+++|++|+++.|++. ..+ ..+..+++|+.|.+..|.++.
T Consensus 283 i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 283 IASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhcccccccc
Confidence 8754 2332 356799999999999995 322 345667899999999999883
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.15 E-value=5.2e-12 Score=103.58 Aligned_cols=132 Identities=23% Similarity=0.396 Sum_probs=96.0
Q ss_pred CCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccccc
Q 047128 28 CTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTS 107 (312)
Q Consensus 28 l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l 107 (312)
-+.|+.+|+++|.|+ .+.+.+. -.|.++.|++|.|.++ .+ ..++.+++|+.||+++|.++ .+..+-..+.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLG----- 352 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLG----- 352 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhh-hccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhc-----
Confidence 356888999999998 8888775 6799999999999998 44 34888999999999999887 3333333333
Q ss_pred cccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccc
Q 047128 108 CSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRR 187 (312)
Q Consensus 108 ~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 187 (312)
+++.|.+++|.+... ..+.++.+|..||+++|+|. .
T Consensus 353 -----------------------------------------NIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie-~ 388 (490)
T KOG1259|consen 353 -----------------------------------------NIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIE-E 388 (490)
T ss_pred -----------------------------------------CEeeeehhhhhHhhh--hhhHhhhhheeccccccchh-h
Confidence 366677777777622 24567777888888888875 3
Q ss_pred cC--hhhcCCCCCcEEECCCccCCccCCc
Q 047128 188 IP--ESIGVMTSLESIDFSTNQLSGEIPE 214 (312)
Q Consensus 188 ~p--~~~~~l~~L~~L~l~~N~l~~~~p~ 214 (312)
.. ..++++|.|+.+.+.+|.+. .+++
T Consensus 389 ldeV~~IG~LPCLE~l~L~~NPl~-~~vd 416 (490)
T KOG1259|consen 389 LDEVNHIGNLPCLETLRLTGNPLA-GSVD 416 (490)
T ss_pred HHHhcccccccHHHHHhhcCCCcc-ccch
Confidence 22 34677888888888888887 4444
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.13 E-value=3e-11 Score=77.69 Aligned_cols=59 Identities=31% Similarity=0.319 Sum_probs=29.1
Q ss_pred CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCc
Q 047128 6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK 65 (312)
Q Consensus 6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~ 65 (312)
+|++|++++|+++...+..|.++++|++|++++|.++ .++...+.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCc
Confidence 4455555555554444444555555555555555554 4444444445555555555544
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.11 E-value=4.3e-11 Score=76.98 Aligned_cols=61 Identities=31% Similarity=0.482 Sum_probs=54.0
Q ss_pred CCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCC
Q 047128 29 TTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNL 90 (312)
Q Consensus 29 ~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 90 (312)
++|++|++++|+++ .+|...++++++|++|++++|+++...+..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 57899999999999 88888777899999999999999977778899999999999999874
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=99.01 E-value=7.5e-12 Score=113.51 Aligned_cols=112 Identities=27% Similarity=0.383 Sum_probs=78.7
Q ss_pred HHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCe
Q 047128 145 DILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNH 224 (312)
Q Consensus 145 ~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~ 224 (312)
+-++.++.|||++|+++... .+..+++|++|||+.|.+. .+|..-.--..|+.|.+++|.++ ..-+ +.++.+|+.
T Consensus 184 qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL~g-ie~LksL~~ 258 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TLRG-IENLKSLYG 258 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH-hhhh-HHhhhhhhc
Confidence 34566788888888887433 6778888888888888887 56542222234888888888887 3332 667888888
Q ss_pred EecccCcccccC--CCCCCCCCCccccccCCCCCCCCCC
Q 047128 225 LNLSNNNLTGKI--PSSTQLQSFDVSSFAGNDLCGAPIP 261 (312)
Q Consensus 225 L~l~~N~l~~~~--~~~~~l~~l~~~~l~~n~l~~~p~~ 261 (312)
||+++|-+.+.- ...+.+..|..+++.||++|..|+.
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~h 297 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWH 297 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHH
Confidence 888888776532 2224566677888888888877754
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.00 E-value=1.5e-10 Score=104.09 Aligned_cols=106 Identities=22% Similarity=0.219 Sum_probs=61.0
Q ss_pred CCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcE
Q 047128 3 SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQI 82 (312)
Q Consensus 3 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 82 (312)
.+++|+.+++.+|.|.. +...+..+++|++|++++|.|+ .+..-- .++.|+.|++++|.+.. + ..+..++.|+.
T Consensus 93 ~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~~l~--~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~ 166 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLEGLS--TLTLLKELNLSGNLISD-I-SGLESLKSLKL 166 (414)
T ss_pred cccceeeeeccccchhh-cccchhhhhcchheeccccccc-cccchh--hccchhhheeccCcchh-c-cCCccchhhhc
Confidence 45666666666666652 2222555666666777777666 443321 35556666777776662 2 33455666666
Q ss_pred EEccCCCCCcccc-hhhHhhcccccccccccccc
Q 047128 83 LDIADTNLSGAIP-NWINNLTGMVTSCSFTRSVQ 115 (312)
Q Consensus 83 L~l~~n~l~~~~~-~~~~~l~~L~~l~l~~n~~~ 115 (312)
+++++|++...-+ . ...+..++.+.+..|.+.
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 7777766653333 1 355566666666666554
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.97 E-value=7.3e-11 Score=106.10 Aligned_cols=197 Identities=23% Similarity=0.271 Sum_probs=118.7
Q ss_pred CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128 4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL 83 (312)
Q Consensus 4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 83 (312)
+..++.+++..|.|.. .-..+..+++|+.+++.+|.+. .+...+. .+++|++|++++|.|+.. ..+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~-~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLS-SLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchh-hhhcchheeccccccccc--cchhhccchhhh
Confidence 4455666667777652 2334666777778888888777 5554333 577888888888887743 235666667788
Q ss_pred EccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc
Q 047128 84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK 163 (312)
Q Consensus 84 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~ 163 (312)
++++|.++.. ..+..++.|+.+++.+|.+...... . ...+..++.+.+.+|.+...
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~---------------------~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEND---------------------E-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhh---------------------h-hhhccchHHHhccCCchhcc
Confidence 8888877632 2344466666666666665543221 0 12344566677777766622
Q ss_pred CChhhhcCCCCCEEEccCCCCccccChhhcCCCC--CcEEECCCccCCccCCccccCCCCCCeEecccCcccc
Q 047128 164 IPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTS--LESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG 234 (312)
Q Consensus 164 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~--L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 234 (312)
. .+..+..+..+++..|.++ .+-. +..++. |+.+++++|.+. ..+..+.....+..+++.+|++..
T Consensus 202 ~--~~~~~~~l~~~~l~~n~i~-~~~~-l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 202 E--GLDLLKKLVLLSLLDNKIS-KLEG-LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred c--chHHHHHHHHhhcccccce-eccC-cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccc
Confidence 2 2334445555566667665 2211 222333 778888888877 444455666777778888877763
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.92 E-value=3.5e-10 Score=94.61 Aligned_cols=213 Identities=15% Similarity=0.189 Sum_probs=147.8
Q ss_pred CCCCcCEEECCCCc---cccccc-------ccccCCCCCCEEECcCCCCCCCCChhHH---hcCCCCcEEEccCCccccc
Q 047128 3 SLTSLVWLRLGKNK---LSVDIL-------VSLKNCTTLESLDVGENEFVGNIPTWIG---ERFSRMVVLILRSNKFHGP 69 (312)
Q Consensus 3 ~l~~L~~L~L~~n~---i~~~~~-------~~l~~l~~L~~L~l~~n~l~~~lp~~~~---~~l~~L~~L~L~~n~l~~~ 69 (312)
+.+.|+..++++-- ....+| .++.++++|+++|||+|.+....+..+. +.+..|++|.|.+|.+...
T Consensus 56 ~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ 135 (382)
T KOG1909|consen 56 SKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPE 135 (382)
T ss_pred hcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChh
Confidence 45567777776542 222333 3556788999999999998755554432 3678999999999987622
Q ss_pred C-------------CcCCCCCCCCcEEEccCCCCCcc----cchhhHhhcccccccccccccccccCCCCccceeeeeee
Q 047128 70 L-------------PTRLCDLPFLQILDIADTNLSGA----IPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKA 132 (312)
Q Consensus 70 ~-------------~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~ 132 (312)
. ....+.-+.|+++..++|++... ....|...+.|+.+.+..|.+...-
T Consensus 136 ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG-------------- 201 (382)
T KOG1909|consen 136 AGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEG-------------- 201 (382)
T ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCch--------------
Confidence 1 12235567899999999998632 3346777788888877777654210
Q ss_pred eeeecCcccchHHHhccccEEEcCCCccccc----CChhhhcCCCCCEEEccCCCCccccCh----hh-cCCCCCcEEEC
Q 047128 133 SVVSKGEMVDYEDILNLVRMIDISRNNFSGK----IPLEVTNLKALHSLNFSYNSFTRRIPE----SI-GVMTSLESIDF 203 (312)
Q Consensus 133 ~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~----~~-~~l~~L~~L~l 203 (312)
.......+..+++|+.||+.+|-++.. +.+.+..+++|+.|+++.|.+...-.. .+ ...|+|+.+.+
T Consensus 202 ----~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l 277 (382)
T KOG1909|consen 202 ----VTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLEL 277 (382)
T ss_pred ----hHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceecc
Confidence 001223445678999999999998733 345667789999999999998743322 22 34689999999
Q ss_pred CCccCCcc----CCccccCCCCCCeEecccCccc
Q 047128 204 STNQLSGE----IPESMSSLTFSNHLNLSNNNLT 233 (312)
Q Consensus 204 ~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 233 (312)
.+|.++.. +-..+...+.|..|++++|.+.
T Consensus 278 ~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 278 AGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred CcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 99999843 2223456889999999999993
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.85 E-value=1.3e-09 Score=105.15 Aligned_cols=107 Identities=22% Similarity=0.207 Sum_probs=70.3
Q ss_pred CCCcCEEECCCCc--ccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128 4 LTSLVWLRLGKNK--LSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ 81 (312)
Q Consensus 4 l~~L~~L~L~~n~--i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 81 (312)
+++|++|-+..|. +.......|..++.|++||+++|.-.+.+|..++ ++-+|++|+++++.+. .+|..+..+..|.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~-~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG-ELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh-hhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 4566777777765 4323333466677777777777655557777776 6777777777777777 6777777777777
Q ss_pred EEEccCCCCCcccchhhHhhccccccccccc
Q 047128 82 ILDIADTNLSGAIPNWINNLTGMVTSCSFTR 112 (312)
Q Consensus 82 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n 112 (312)
+|++.++.-....|.....+.+|+.+.+..-
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeecc
Confidence 7777766544344555566777777665443
No 43
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.70 E-value=1.7e-09 Score=78.88 Aligned_cols=98 Identities=24% Similarity=0.331 Sum_probs=71.1
Q ss_pred cCEEECCCCccccccccc---ccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128 7 LVWLRLGKNKLSVDILVS---LKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL 83 (312)
Q Consensus 7 L~~L~L~~n~i~~~~~~~---l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 83 (312)
+..++|+.|++. .+++. +....+|+..++++|.+. .+|..+....+.++.+++++|.+. .+|..+..++.|+.+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 456778888775 34433 445566777888888888 888887766778888888888888 677778888888888
Q ss_pred EccCCCCCcccchhhHhhccccccc
Q 047128 84 DIADTNLSGAIPNWINNLTGMVTSC 108 (312)
Q Consensus 84 ~l~~n~l~~~~~~~~~~l~~L~~l~ 108 (312)
++++|.+. ..|..+..+.++..|+
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhc
Confidence 88888887 5666665566544433
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.63 E-value=4.3e-08 Score=94.82 Aligned_cols=200 Identities=23% Similarity=0.261 Sum_probs=132.2
Q ss_pred CcCEEECCCCcccccccccccCCCCCCEEECcCCC--CCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128 6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENE--FVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL 83 (312)
Q Consensus 6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~--l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 83 (312)
..+...+.+|.+. ..+... ..+.|+.|-+.+|. +. .++..+|..++.|+.||+++|.--+.+|..++.+-+|++|
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred heeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 4566677777764 344333 34579999999996 66 8888888889999999999988777899999999999999
Q ss_pred EccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccc--
Q 047128 84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS-- 161 (312)
Q Consensus 84 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~-- 161 (312)
++++..+. .+|..+.++..|.+|++..+...... +.....+++|++|.+......
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~----------------------~~i~~~L~~Lr~L~l~~s~~~~~ 657 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI----------------------PGILLELQSLRVLRLPRSALSND 657 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccc----------------------cchhhhcccccEEEeeccccccc
Confidence 99999998 89999999999999988776533211 334455788898888765422
Q ss_pred ccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCc----EEECCCccCCccCCccccCCCCCCeEecccCcccc
Q 047128 162 GKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLE----SIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG 234 (312)
Q Consensus 162 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~----~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 234 (312)
...-..+.++.+|+.+....... .+-..+..++.|. .+.+.++... ..+..+..+.+|+.|.+.++.+..
T Consensus 658 ~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 658 KLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred hhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch
Confidence 11222334444555444432222 0111122222222 3333333333 344556778889999998887764
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=9.1e-09 Score=84.65 Aligned_cols=204 Identities=18% Similarity=0.126 Sum_probs=116.4
Q ss_pred CCCCCCEEECcCCCCCC--CCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccc-hhhHhhcc
Q 047128 27 NCTTLESLDVGENEFVG--NIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIP-NWINNLTG 103 (312)
Q Consensus 27 ~l~~L~~L~l~~n~l~~--~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~ 103 (312)
..+.++.+||.+|.|++ ++. .+.+.+|.|++|+++.|++...+...-.+..+|++|.+.+..+....- ..+..+|.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~-~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIG-AILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHH-HHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 35677778888887773 122 233477888888888887764332221456678888777776653322 34456667
Q ss_pred cccccccccccccccCCCCcc-cee-eeeeeee-----eecCcccchHHHhccccEEEcCCCcccccC-ChhhhcCCCCC
Q 047128 104 MVTSCSFTRSVQQYLPLPIDV-GVI-LVEKASV-----VSKGEMVDYEDILNLVRMIDISRNNFSGKI-PLEVTNLKALH 175 (312)
Q Consensus 104 L~~l~l~~n~~~~~~~~~~~~-~~~-~~~~~~~-----~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~-p~~~~~l~~L~ 175 (312)
++.+.++.|++-+..-..-.. ... -...+.. ............++++..+.+..+.+.... .+.+..++.+.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 777777666543221111000 000 0000000 001112223345677888888888775433 34556677777
Q ss_pred EEEccCCCCccc-cChhhcCCCCCcEEECCCccCCccCCc------cccCCCCCCeEecccCccc
Q 047128 176 SLNFSYNSFTRR-IPESIGVMTSLESIDFSTNQLSGEIPE------SMSSLTFSNHLNLSNNNLT 233 (312)
Q Consensus 176 ~L~Ls~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~------~~~~l~~L~~L~l~~N~l~ 233 (312)
-|+|+.|+|... .-+.+..++.|..|.+++|.+.+.... .++.+++++.|+=+ +|+
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs--kIs 290 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS--KIS 290 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc--ccc
Confidence 888888888632 224567788899999999988744322 24566777776543 554
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.58 E-value=3.9e-10 Score=102.68 Aligned_cols=182 Identities=21% Similarity=0.179 Sum_probs=123.3
Q ss_pred cccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCccc----------ccCCcCCCCCCCCcEEEccCCCCC
Q 047128 22 LVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFH----------GPLPTRLCDLPFLQILDIADTNLS 91 (312)
Q Consensus 22 ~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~----------~~~~~~~~~l~~L~~L~l~~n~l~ 91 (312)
|-.+..++.|++|.+.++.+. . ..++-.--.+|++|.- .|.++ +.+..++ ....|.+.+.++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~-~-~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLS-T-AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchh-h-hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence 556677889999999999887 3 2222111134555432 22222 1111111 2346788888889887
Q ss_pred cccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcC
Q 047128 92 GAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNL 171 (312)
Q Consensus 92 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l 171 (312)
....++.-++.++.|++.+|.+.. .+....++.|++|||+.|.++ ..|..-..-
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~------------------------v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~g 231 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTK------------------------VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVG 231 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhh------------------------hHHHHhcccccccccccchhc-cccccchhh
Confidence 667788888899999999888764 224456788999999999998 455422222
Q ss_pred CCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccC-CccccCCCCCCeEecccCccccc
Q 047128 172 KALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEI-PESMSSLTFSNHLNLSNNNLTGK 235 (312)
Q Consensus 172 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~ 235 (312)
..|+.|++++|.++ .+-+ +.++.+|+.||+++|-|++-- -.-+..+..|+.|+|.+|++-+.
T Consensus 232 c~L~~L~lrnN~l~-tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 232 CKLQLLNLRNNALT-TLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hhheeeeecccHHH-hhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 34999999999987 4433 568899999999999887321 12245677889999999998753
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.51 E-value=9.6e-08 Score=77.77 Aligned_cols=235 Identities=14% Similarity=0.118 Sum_probs=151.5
Q ss_pred CCCcCEEECCCCccccc----ccccccCCCCCCEEECcCCCC---CCCCChh-------HHhcCCCCcEEEccCCccccc
Q 047128 4 LTSLVWLRLGKNKLSVD----ILVSLKNCTTLESLDVGENEF---VGNIPTW-------IGERFSRMVVLILRSNKFHGP 69 (312)
Q Consensus 4 l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l---~~~lp~~-------~~~~l~~L~~L~L~~n~l~~~ 69 (312)
+..++.++||+|.|... +...+++-.+|+..++++-.. .+.+++. +. +++.|+..+||.|.+...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLl-kcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALL-KCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHh-cCCcceeeeccccccCcc
Confidence 56788999999999643 334566778899998887432 2233432 22 689999999999999866
Q ss_pred CCcC----CCCCCCCcEEEccCCCCCcccch----h---------hHhhcccccccccccccccccCCCCccceeeeeee
Q 047128 70 LPTR----LCDLPFLQILDIADTNLSGAIPN----W---------INNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKA 132 (312)
Q Consensus 70 ~~~~----~~~l~~L~~L~l~~n~l~~~~~~----~---------~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~ 132 (312)
.|.. ++....|.+|.+++|.+...-.. + ..+-|.|++..+..|++..-..
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~------------- 174 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK------------- 174 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH-------------
Confidence 6543 56778999999999987532211 1 2344567777777776652100
Q ss_pred eeeecCcccchHHHhccccEEEcCCCcccccCC-----hhhhcCCCCCEEEccCCCCccc----cChhhcCCCCCcEEEC
Q 047128 133 SVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP-----LEVTNLKALHSLNFSYNSFTRR----IPESIGVMTSLESIDF 203 (312)
Q Consensus 133 ~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p-----~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~l 203 (312)
....-.+..-..|+.+.+..|.|.-.-- .....+.+|+.||+..|.++.. ....+..++.|++|.+
T Consensus 175 -----~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l 249 (388)
T COG5238 175 -----ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL 249 (388)
T ss_pred -----HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence 0011122233568888888888763211 1234678999999999998732 2334567788999999
Q ss_pred CCccCCccCCccc------cCCCCCCeEecccCcccccCCCC--------CCCCCCccccccCCCCCC
Q 047128 204 STNQLSGEIPESM------SSLTFSNHLNLSNNNLTGKIPSS--------TQLQSFDVSSFAGNDLCG 257 (312)
Q Consensus 204 ~~N~l~~~~p~~~------~~l~~L~~L~l~~N~l~~~~~~~--------~~l~~l~~~~l~~n~l~~ 257 (312)
.+|-++......+ ...|+|..|...+|.+.+..-.. ..++-|..+...||++..
T Consensus 250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred cchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 9998885544332 13578888999999877532211 233444555567776653
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.6e-09 Score=85.86 Aligned_cols=176 Identities=19% Similarity=0.166 Sum_probs=86.4
Q ss_pred cCEEECCCCccccc-ccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCc-cccc-CCcCCCCCCCCcEE
Q 047128 7 LVWLRLGKNKLSVD-ILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK-FHGP-LPTRLCDLPFLQIL 83 (312)
Q Consensus 7 L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L 83 (312)
|+.|||+...|+.. .-..++.+++|+.|.+.++++.+.+...+. .-.+|+.|+++++. ++.. ...-+..++.|..|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 55566665555421 222344555566666666666555555554 44556666665533 2210 00113445555566
Q ss_pred EccCCCCCcccch-hhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccc-
Q 047128 84 DIADTNLSGAIPN-WINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS- 161 (312)
Q Consensus 84 ~l~~n~l~~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~- 161 (312)
+++++.+....-. .... .-++|+.|++++..-.
T Consensus 266 NlsWc~l~~~~Vtv~V~h---------------------------------------------ise~l~~LNlsG~rrnl 300 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAH---------------------------------------------ISETLTQLNLSGYRRNL 300 (419)
T ss_pred CchHhhccchhhhHHHhh---------------------------------------------hchhhhhhhhhhhHhhh
Confidence 6665554322110 0000 0123555666554321
Q ss_pred --ccCChhhhcCCCCCEEEccCCC-CccccChhhcCCCCCcEEECCCccCCccCCcc---ccCCCCCCeEecccC
Q 047128 162 --GKIPLEVTNLKALHSLNFSYNS-FTRRIPESIGVMTSLESIDFSTNQLSGEIPES---MSSLTFSNHLNLSNN 230 (312)
Q Consensus 162 --~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~---~~~l~~L~~L~l~~N 230 (312)
..+..-...+++|.+|||+.|. ++...-..|.+++.|++|.++.+-.- +|.. +...|.|.+||+.+.
T Consensus 301 ~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 301 QKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 0111122456777777777663 44333334556677777777766432 4442 356677777777654
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.42 E-value=2.8e-08 Score=72.58 Aligned_cols=81 Identities=25% Similarity=0.442 Sum_probs=42.2
Q ss_pred ccEEEcCCCcccccCChhh-hcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecc
Q 047128 150 VRMIDISRNNFSGKIPLEV-TNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLS 228 (312)
Q Consensus 150 L~~L~ls~n~i~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 228 (312)
|+.+++++|.+. .+|+.| .+.+..+.+++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.|+..
T Consensus 55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 444555555555 233333 23345555555555555 55555555555555555555555 444444445555555555
Q ss_pred cCccc
Q 047128 229 NNNLT 233 (312)
Q Consensus 229 ~N~l~ 233 (312)
+|.+.
T Consensus 132 ~na~~ 136 (177)
T KOG4579|consen 132 ENARA 136 (177)
T ss_pred CCccc
Confidence 55444
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.36 E-value=4.2e-07 Score=53.64 Aligned_cols=37 Identities=30% Similarity=0.448 Sum_probs=20.9
Q ss_pred CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCC
Q 047128 5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFV 42 (312)
Q Consensus 5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~ 42 (312)
++|++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35666666666665 34444666666666666666665
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.28 E-value=1e-06 Score=51.96 Aligned_cols=35 Identities=31% Similarity=0.601 Sum_probs=13.7
Q ss_pred CCEEEccCCCCccccChhhcCCCCCcEEECCCccCC
Q 047128 174 LHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLS 209 (312)
Q Consensus 174 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 209 (312)
|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444443 33333344444444444444443
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=2e-07 Score=76.88 Aligned_cols=189 Identities=15% Similarity=0.132 Sum_probs=111.1
Q ss_pred CCCCEEECcCCCCCCCCCh-hHHhcCCCCcEEEccCCcccc--cCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccc
Q 047128 29 TTLESLDVGENEFVGNIPT-WIGERFSRMVVLILRSNKFHG--PLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMV 105 (312)
Q Consensus 29 ~~L~~L~l~~n~l~~~lp~-~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 105 (312)
.-++.+.+-++.|...-.. .+......++.+||.+|.+.. .+...+..+|.|++|+++.|++...+...-..+.+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 3444566666666522222 244467899999999999983 2233457899999999999998754332224566788
Q ss_pred cccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcc----------cccCChh--------
Q 047128 106 TSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF----------SGKIPLE-------- 167 (312)
Q Consensus 106 ~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i----------~~~~p~~-------- 167 (312)
++.+.+..+.+... ......++.++.|.++.|.+ ....|..
T Consensus 125 ~lVLNgT~L~w~~~---------------------~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c 183 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQS---------------------TSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPC 183 (418)
T ss_pred EEEEcCCCCChhhh---------------------hhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCc
Confidence 88777766653221 12223344455555555532 2111110
Q ss_pred -----------hhcCCCCCEEEccCCCCccccC-hhhcCCCCCcEEECCCccCCccC-CccccCCCCCCeEecccCcccc
Q 047128 168 -----------VTNLKALHSLNFSYNSFTRRIP-ESIGVMTSLESIDFSTNQLSGEI-PESMSSLTFSNHLNLSNNNLTG 234 (312)
Q Consensus 168 -----------~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~ 234 (312)
..-.+++..+-+..|.+...-. ..+..+|.+.-|+|+.|+|.+-- -+.+..++.|+-|.+++|++..
T Consensus 184 ~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 184 LEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred HHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 0123555555555555432111 12345566778888888887321 1356678888888888888876
Q ss_pred cCCC
Q 047128 235 KIPS 238 (312)
Q Consensus 235 ~~~~ 238 (312)
+...
T Consensus 264 ~l~~ 267 (418)
T KOG2982|consen 264 PLRG 267 (418)
T ss_pred cccC
Confidence 5543
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.1e-07 Score=78.47 Aligned_cols=161 Identities=17% Similarity=0.097 Sum_probs=112.2
Q ss_pred CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCC-CCCCCCChhHHhcCCCCcEEEccCCcccccCCcC-CC-CCC
Q 047128 2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGEN-EFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTR-LC-DLP 78 (312)
Q Consensus 2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n-~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~-~l~ 78 (312)
+.|.+|+.|.|.++++.+.+...++.-..|+.++++.+ .++..--..+++.+..|..|++++|.+....-.. +. --+
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise 286 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE 286 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence 45788999999999998877788899999999999986 5662223446668999999999999877432111 11 125
Q ss_pred CCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCC
Q 047128 79 FLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRN 158 (312)
Q Consensus 79 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n 158 (312)
+|+.|++++..=. .....+. ......++|..||++++
T Consensus 287 ~l~~LNlsG~rrn-l~~sh~~------------------------------------------tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 287 TLTQLNLSGYRRN-LQKSHLS------------------------------------------TLVRRCPNLVHLDLSDS 323 (419)
T ss_pred hhhhhhhhhhHhh-hhhhHHH------------------------------------------HHHHhCCceeeeccccc
Confidence 7888888875321 0000111 12234667888999876
Q ss_pred cc-cccCChhhhcCCCCCEEEccCCCCccccChh---hcCCCCCcEEECCCcc
Q 047128 159 NF-SGKIPLEVTNLKALHSLNFSYNSFTRRIPES---IGVMTSLESIDFSTNQ 207 (312)
Q Consensus 159 ~i-~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~---~~~l~~L~~L~l~~N~ 207 (312)
.. +...-..|.+++.|++|.++.|.. .+|.. +...|+|.+|+.-+.-
T Consensus 324 v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 324 VMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 54 433334667889999999999984 56654 3567899999987653
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.12 E-value=1.1e-05 Score=70.95 Aligned_cols=55 Identities=11% Similarity=0.184 Sum_probs=28.2
Q ss_pred CCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCC
Q 047128 27 NCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADT 88 (312)
Q Consensus 27 ~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 88 (312)
.+.++++|++++|.++ .+| .+ ..+|++|+++++.-...+|..+ .++|++|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP-~L---P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLP-VL---PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccC-CC---CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 3455666666666655 555 11 2346666665533222444433 135666666655
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.12 E-value=7.6e-06 Score=64.02 Aligned_cols=62 Identities=21% Similarity=0.323 Sum_probs=38.9
Q ss_pred CCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccch
Q 047128 31 LESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPN 96 (312)
Q Consensus 31 L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 96 (312)
=+.+++.+.++. .+.. ++....+...+|+++|.+. .+ ..|..++.|.+|.+++|+|+.+.|.
T Consensus 21 e~e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~ 82 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPD 82 (233)
T ss_pred cccccccccccc-chhh-ccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccc
Confidence 355666666654 2222 3334567777788888776 33 3467777777888877777755553
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.06 E-value=5.5e-06 Score=64.78 Aligned_cols=103 Identities=19% Similarity=0.184 Sum_probs=73.9
Q ss_pred CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCc--CCCCCCCCcEE
Q 047128 6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPT--RLCDLPFLQIL 83 (312)
Q Consensus 6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L 83 (312)
....+||++|.+.. ...|..++.|..|.+.+|+|+ .|...+..-+++|+.|.+.+|.+. .+.+ .+..+|.|++|
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence 45668888888752 235677888888899999988 888887767788899999988887 3222 25677888888
Q ss_pred EccCCCCCccc---chhhHhhccccccccccc
Q 047128 84 DIADTNLSGAI---PNWINNLTGMVTSCSFTR 112 (312)
Q Consensus 84 ~l~~n~l~~~~---~~~~~~l~~L~~l~l~~n 112 (312)
.+-+|+++..- -..+..+++|+.|++..-
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 88888775321 124566777777776543
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.90 E-value=8.5e-06 Score=77.23 Aligned_cols=83 Identities=23% Similarity=0.367 Sum_probs=46.2
Q ss_pred CCCCEEECcCCCCC-CCCChhHHhcCCCCcEEEccCCcccc-cCCcCCCCCCCCcEEEccCCCCCcccchhhHhhccccc
Q 047128 29 TTLESLDVGENEFV-GNIPTWIGERFSRMVVLILRSNKFHG-PLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT 106 (312)
Q Consensus 29 ~~L~~L~l~~n~l~-~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 106 (312)
.+|++|++++...- ..-|..++.-+|+|+.|.+++=.+.. ..-....+.|+|..||+|+.+++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 45666677665432 12233455556777777776655431 1112345667777777777766633 45666666666
Q ss_pred ccccccc
Q 047128 107 SCSFTRS 113 (312)
Q Consensus 107 l~l~~n~ 113 (312)
|.+.+-.
T Consensus 200 L~mrnLe 206 (699)
T KOG3665|consen 200 LSMRNLE 206 (699)
T ss_pred HhccCCC
Confidence 6554433
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.87 E-value=5.7e-05 Score=56.19 Aligned_cols=62 Identities=13% Similarity=0.172 Sum_probs=25.8
Q ss_pred ccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccC
Q 047128 23 VSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIAD 87 (312)
Q Consensus 23 ~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 87 (312)
..|.++++|+.+.+.. .+. .++...|..+.+|+.+.+..+ +.......|..+++++.+.+..
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 3455555555555553 344 455555545555565555553 4433334455555555555543
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.85 E-value=0.00015 Score=63.89 Aligned_cols=133 Identities=19% Similarity=0.235 Sum_probs=77.4
Q ss_pred cCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccccccccccc-cccccCCCCccceeeee
Q 047128 52 RFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRS-VQQYLPLPIDVGVILVE 130 (312)
Q Consensus 52 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~~~~~~~ 130 (312)
.+.+++.|++++|.++ .+|. + .++|+.|.++++.--..+|+.+ ..+|+.|.+.+|. +.. +
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-L------------ 110 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-L------------ 110 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-c------------
Confidence 4789999999999988 6662 2 3469999998743323666544 2578888888763 321 1
Q ss_pred eeeeeecCcccchHHHhccccEEEcCCCcccc--cCChhhhcCCCCCEEEccCCC-Cc-cccChhhcCCCCCcEEECCCc
Q 047128 131 KASVVSKGEMVDYEDILNLVRMIDISRNNFSG--KIPLEVTNLKALHSLNFSYNS-FT-RRIPESIGVMTSLESIDFSTN 206 (312)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~--~~p~~~~~l~~L~~L~Ls~n~-l~-~~~p~~~~~l~~L~~L~l~~N 206 (312)
+.+|+.|++..+.... .+| ++|+.|.+.+++ .. ...|.. -.++|++|++++|
T Consensus 111 ----------------P~sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c 166 (426)
T PRK15386 111 ----------------PESVRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGC 166 (426)
T ss_pred ----------------ccccceEEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCC
Confidence 2346667776555431 222 345566654322 11 011211 1256777777777
Q ss_pred cCCccCCccccCCCCCCeEecccC
Q 047128 207 QLSGEIPESMSSLTFSNHLNLSNN 230 (312)
Q Consensus 207 ~l~~~~p~~~~~l~~L~~L~l~~N 230 (312)
... ..|+.+ ..+|+.|+++.+
T Consensus 167 ~~i-~LP~~L--P~SLk~L~ls~n 187 (426)
T PRK15386 167 SNI-ILPEKL--PESLQSITLHIE 187 (426)
T ss_pred Ccc-cCcccc--cccCcEEEeccc
Confidence 655 344332 246777777665
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.79 E-value=1.9e-05 Score=64.64 Aligned_cols=191 Identities=15% Similarity=0.199 Sum_probs=120.0
Q ss_pred ccccCCCCCCEEECcCCCCCCCCChhHH---hcCCCCcEEEccCCcccccCCc-------------CCCCCCCCcEEEcc
Q 047128 23 VSLKNCTTLESLDVGENEFVGNIPTWIG---ERFSRMVVLILRSNKFHGPLPT-------------RLCDLPFLQILDIA 86 (312)
Q Consensus 23 ~~l~~l~~L~~L~l~~n~l~~~lp~~~~---~~l~~L~~L~L~~n~l~~~~~~-------------~~~~l~~L~~L~l~ 86 (312)
.++.+|++|+..+||+|.+....|..+. +.-..|++|.+++|.+...... -...-|.|++.+..
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 3456788888888888888766665433 2457788888888877522211 12355788888888
Q ss_pred CCCCCcccch-----hhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcc---cchHHHhccccEEEcCCC
Q 047128 87 DTNLSGAIPN-----WINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEM---VDYEDILNLVRMIDISRN 158 (312)
Q Consensus 87 ~n~l~~~~~~-----~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~ls~n 158 (312)
.|++.. .+. .+..-..|+.+.+..|.+.. .|.. ..-....++|+.||+.+|
T Consensus 166 rNRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrp--------------------egv~~L~~~gl~y~~~LevLDlqDN 224 (388)
T COG5238 166 RNRLEN-GSKELSAALLESHENLKEVKIQQNGIRP--------------------EGVTMLAFLGLFYSHSLEVLDLQDN 224 (388)
T ss_pred cchhcc-CcHHHHHHHHHhhcCceeEEeeecCcCc--------------------chhHHHHHHHHHHhCcceeeecccc
Confidence 888752 221 23333455555555554431 0000 011134678999999999
Q ss_pred ccccc----CChhhhcCCCCCEEEccCCCCccccChh----h--cCCCCCcEEECCCccCCccC-Cc-----cc-cCCCC
Q 047128 159 NFSGK----IPLEVTNLKALHSLNFSYNSFTRRIPES----I--GVMTSLESIDFSTNQLSGEI-PE-----SM-SSLTF 221 (312)
Q Consensus 159 ~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~----~--~~l~~L~~L~l~~N~l~~~~-p~-----~~-~~l~~ 221 (312)
-++-. ...++...+.|+.|.+..|.++..-... | ...|+|..|...+|.+.+.+ .. .. ..+|.
T Consensus 225 tft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~ 304 (388)
T COG5238 225 TFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPL 304 (388)
T ss_pred chhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHH
Confidence 98732 3345566778999999999887432222 2 24589999999999776432 22 11 34677
Q ss_pred CCeEecccCcccc
Q 047128 222 SNHLNLSNNNLTG 234 (312)
Q Consensus 222 L~~L~l~~N~l~~ 234 (312)
|..+-+.+|+|..
T Consensus 305 L~~le~ngNr~~E 317 (388)
T COG5238 305 LVDLERNGNRIKE 317 (388)
T ss_pred HHHHHHccCcchh
Confidence 7788888898874
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.72 E-value=0.00011 Score=54.59 Aligned_cols=81 Identities=14% Similarity=0.151 Sum_probs=29.8
Q ss_pred CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128 2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ 81 (312)
Q Consensus 2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 81 (312)
.++++|+.+.+.. .+.......|.++++|+.+.+.++ +. .++...+..+++++.+.+.+ .+.......|..+++|+
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccccc
Confidence 3444555555443 233333344555555555555443 33 44444444444555555543 22212233344445555
Q ss_pred EEEcc
Q 047128 82 ILDIA 86 (312)
Q Consensus 82 ~L~l~ 86 (312)
.+++.
T Consensus 85 ~i~~~ 89 (129)
T PF13306_consen 85 NIDIP 89 (129)
T ss_dssp EEEET
T ss_pred ccccC
Confidence 55443
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.69 E-value=2.7e-05 Score=73.93 Aligned_cols=89 Identities=20% Similarity=0.203 Sum_probs=63.6
Q ss_pred HHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCcc-ccChhhcCCCCCcEEECCCccCCccC--Cc----cc
Q 047128 144 EDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTR-RIPESIGVMTSLESIDFSTNQLSGEI--PE----SM 216 (312)
Q Consensus 144 ~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~--p~----~~ 216 (312)
...+++|..||+|+.+++.. .+++++++|+.|.+.+=.+.. ..-..+..+++|+.||+|........ .. .-
T Consensus 169 c~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~ 246 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECG 246 (699)
T ss_pred hhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhc
Confidence 34577899999999999844 678899999999887766652 11124568899999999987554221 11 11
Q ss_pred cCCCCCCeEecccCcccc
Q 047128 217 SSLTFSNHLNLSNNNLTG 234 (312)
Q Consensus 217 ~~l~~L~~L~l~~N~l~~ 234 (312)
..+|+|+.||.|++.+..
T Consensus 247 ~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 247 MVLPELRFLDCSGTDINE 264 (699)
T ss_pred ccCccccEEecCCcchhH
Confidence 358899999999887765
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.27 E-value=0.00027 Score=57.68 Aligned_cols=100 Identities=19% Similarity=0.232 Sum_probs=55.1
Q ss_pred CCCcCEEECCCCcccccccccccCCCCCCEEECcCC--CCCCCCChhHHhcCCCCcEEEccCCcccccCCcC---CCCCC
Q 047128 4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGEN--EFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTR---LCDLP 78 (312)
Q Consensus 4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n--~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~ 78 (312)
+..|+.+++.+..++. -..|-.+++|++|.++.| ++.+.++.-+- .+++|+++++++|+++. ++. +..+.
T Consensus 42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e-~~P~l~~l~ls~Nki~~--lstl~pl~~l~ 116 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAE-KAPNLKVLNLSGNKIKD--LSTLRPLKELE 116 (260)
T ss_pred ccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhh-hCCceeEEeecCCcccc--ccccchhhhhc
Confidence 3445555555555542 123445667777777777 55544444443 45777777777777762 233 34445
Q ss_pred CCcEEEccCCCCCccc---chhhHhhccccccc
Q 047128 79 FLQILDIADTNLSGAI---PNWINNLTGMVTSC 108 (312)
Q Consensus 79 ~L~~L~l~~n~l~~~~---~~~~~~l~~L~~l~ 108 (312)
+|..|++.+|..+..- -..|.-+++|+.++
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 5666777776554321 12445555555544
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.09 E-value=0.00037 Score=56.93 Aligned_cols=89 Identities=18% Similarity=0.268 Sum_probs=62.2
Q ss_pred ccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCC--cccccCCcCCCCCCCCcEEEccCCCCCc-ccchhhHhh
Q 047128 25 LKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSN--KFHGPLPTRLCDLPFLQILDIADTNLSG-AIPNWINNL 101 (312)
Q Consensus 25 l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l 101 (312)
......|+.+.+.+..++ .+-.. . .+++|+.|.++.| ++.+.++-..-.+|+|++++++.|++.. ..-.....+
T Consensus 39 ~d~~~~le~ls~~n~glt-t~~~~-P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLT-TLTNF-P-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred cccccchhhhhhhcccee-ecccC-C-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 344566777777777776 33322 2 6899999999999 6655555555566999999999999873 111245667
Q ss_pred ccccccccccccccc
Q 047128 102 TGMVTSCSFTRSVQQ 116 (312)
Q Consensus 102 ~~L~~l~l~~n~~~~ 116 (312)
.+|..|++..|..++
T Consensus 116 ~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcccCCccc
Confidence 778888888877654
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=8.7e-05 Score=61.11 Aligned_cols=82 Identities=18% Similarity=0.209 Sum_probs=51.2
Q ss_pred hccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCC--ccccCCCCCCe
Q 047128 147 LNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIP--ESMSSLTFSNH 224 (312)
Q Consensus 147 ~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~~l~~L~~ 224 (312)
+.+.+.|+..++.++++ ....+++.|+.|.||-|+|+..-| +..+++|++|+|..|.|. .+. .++.++|+|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence 44566677777777632 134567777777777777763322 456677777777777776 332 24556777777
Q ss_pred EecccCccc
Q 047128 225 LNLSNNNLT 233 (312)
Q Consensus 225 L~l~~N~l~ 233 (312)
|.+..|+=.
T Consensus 93 LWL~ENPCc 101 (388)
T KOG2123|consen 93 LWLDENPCC 101 (388)
T ss_pred HhhccCCcc
Confidence 777777543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.00015 Score=59.81 Aligned_cols=80 Identities=19% Similarity=0.154 Sum_probs=45.0
Q ss_pred CCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccc-hhhHhhccccc
Q 047128 28 CTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIP-NWINNLTGMVT 106 (312)
Q Consensus 28 l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~ 106 (312)
+.+.+.|+..++.+. .| .+.+.|+.|+.|.|+-|.|+.. ..+..+.+|+.|+|..|.|..... .-+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 344556666666666 33 2334667777777777776633 235566667777777766652211 13455555555
Q ss_pred cccccc
Q 047128 107 SCSFTR 112 (312)
Q Consensus 107 l~l~~n 112 (312)
|.+..|
T Consensus 93 LWL~EN 98 (388)
T KOG2123|consen 93 LWLDEN 98 (388)
T ss_pred HhhccC
Confidence 555444
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.16 E-value=0.003 Score=30.94 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=10.3
Q ss_pred cCEEECCCCccccccccccc
Q 047128 7 LVWLRLGKNKLSVDILVSLK 26 (312)
Q Consensus 7 L~~L~L~~n~i~~~~~~~l~ 26 (312)
|++|+|++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 556666666665 4444444
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.10 E-value=0.0028 Score=31.04 Aligned_cols=18 Identities=50% Similarity=0.779 Sum_probs=9.1
Q ss_pred CcEEECCCccCCccCCccc
Q 047128 198 LESIDFSTNQLSGEIPESM 216 (312)
Q Consensus 198 L~~L~l~~N~l~~~~p~~~ 216 (312)
|++||+++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555555 444433
No 69
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.55 E-value=0.015 Score=29.66 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=15.1
Q ss_pred CCCCCEEECcCCCCCCCCChhHH
Q 047128 28 CTTLESLDVGENEFVGNIPTWIG 50 (312)
Q Consensus 28 l~~L~~L~l~~n~l~~~lp~~~~ 50 (312)
+++|++|++++|++. .+|.+.|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356777777777777 7776665
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.55 E-value=0.015 Score=29.66 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=15.1
Q ss_pred CCCCCEEECcCCCCCCCCChhHH
Q 047128 28 CTTLESLDVGENEFVGNIPTWIG 50 (312)
Q Consensus 28 l~~L~~L~l~~n~l~~~lp~~~~ 50 (312)
+++|++|++++|++. .+|.+.|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356777777777777 7776665
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.34 E-value=0.00044 Score=55.61 Aligned_cols=85 Identities=19% Similarity=0.177 Sum_probs=57.8
Q ss_pred CCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcE
Q 047128 3 SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQI 82 (312)
Q Consensus 3 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 82 (312)
.+...+.||++.|++. ..-..|+-++.+.+|+++.|++. .+|.++. ....+..+++..|... ..|.++...+.+++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~-q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAK-QQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHH-HHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 3455566777777664 34445555666777777777777 7777776 5677777777777766 66777777777777
Q ss_pred EEccCCCCC
Q 047128 83 LDIADTNLS 91 (312)
Q Consensus 83 L~l~~n~l~ 91 (312)
+++-.|.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 777777643
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.18 E-value=0.012 Score=26.79 Aligned_cols=9 Identities=33% Similarity=0.663 Sum_probs=2.9
Q ss_pred CEEECcCCC
Q 047128 32 ESLDVGENE 40 (312)
Q Consensus 32 ~~L~l~~n~ 40 (312)
+.|++++|+
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.85 E-value=0.00022 Score=64.88 Aligned_cols=86 Identities=21% Similarity=0.284 Sum_probs=39.5
Q ss_pred ccccEEEcCCCcccccCCh----hhhcCCC-CCEEEccCCCCccc----cChhhcCC-CCCcEEECCCccCCccCCc---
Q 047128 148 NLVRMIDISRNNFSGKIPL----EVTNLKA-LHSLNFSYNSFTRR----IPESIGVM-TSLESIDFSTNQLSGEIPE--- 214 (312)
Q Consensus 148 ~~L~~L~ls~n~i~~~~p~----~~~~l~~-L~~L~Ls~n~l~~~----~p~~~~~l-~~L~~L~l~~N~l~~~~p~--- 214 (312)
.++++|.++++.++...-. .+...+. +..+++..|++.+. ....+..+ +.++.++++.|.++.....
T Consensus 204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~ 283 (478)
T KOG4308|consen 204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA 283 (478)
T ss_pred ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence 3455555555555422111 1222333 44456666655422 11123333 4556666666666533222
Q ss_pred -cccCCCCCCeEecccCccc
Q 047128 215 -SMSSLTFSNHLNLSNNNLT 233 (312)
Q Consensus 215 -~~~~l~~L~~L~l~~N~l~ 233 (312)
.+..++.++++.+++|++.
T Consensus 284 ~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 284 EVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHhhhHHHHHhhcccCccc
Confidence 2334455566666666554
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.54 E-value=0.00098 Score=53.68 Aligned_cols=85 Identities=16% Similarity=0.197 Sum_probs=73.3
Q ss_pred HhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeE
Q 047128 146 ILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHL 225 (312)
Q Consensus 146 ~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L 225 (312)
.....+.||++.|++- .....|+.++.+..++++.|.+. ..|..+++...+..+++-+|+.+ ..|.++...++++.+
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 3456788999999887 56667888899999999999997 88888888888889999899988 788889999999999
Q ss_pred ecccCccc
Q 047128 226 NLSNNNLT 233 (312)
Q Consensus 226 ~l~~N~l~ 233 (312)
++-.|++.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 99999875
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.78 E-value=0.00083 Score=61.24 Aligned_cols=186 Identities=22% Similarity=0.218 Sum_probs=109.1
Q ss_pred cCEEECCCCccccc----ccccccCCCCCCEEECcCCCCCCCCChhHHhcC----CCCcEEEccCCccccc----CCcCC
Q 047128 7 LVWLRLGKNKLSVD----ILVSLKNCTTLESLDVGENEFVGNIPTWIGERF----SRMVVLILRSNKFHGP----LPTRL 74 (312)
Q Consensus 7 L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l----~~L~~L~L~~n~l~~~----~~~~~ 74 (312)
+..++|.+|.+... +...+..+.+|+.|++++|.+.+.--..+...+ ..+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 56677888877532 335566778888888888888732222222222 3456677777777632 23344
Q ss_pred CCCCCCcEEEccCCCCCc----ccchhhH----hhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHH
Q 047128 75 CDLPFLQILDIADTNLSG----AIPNWIN----NLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDI 146 (312)
Q Consensus 75 ~~l~~L~~L~l~~n~l~~----~~~~~~~----~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (312)
.....++.++++.|.+.. .++..+. ...+++++.+.+|.++..... ........
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~------------------~l~~~l~~ 230 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA------------------LLDEVLAS 230 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH------------------HHHHHHhc
Confidence 556778888888887631 1222333 356677777777665521100 00111112
Q ss_pred hcc-ccEEEcCCCccccc----CChhhhcC-CCCCEEEccCCCCcccc----ChhhcCCCCCcEEECCCccCCc
Q 047128 147 LNL-VRMIDISRNNFSGK----IPLEVTNL-KALHSLNFSYNSFTRRI----PESIGVMTSLESIDFSTNQLSG 210 (312)
Q Consensus 147 ~~~-L~~L~ls~n~i~~~----~p~~~~~l-~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~l~~N~l~~ 210 (312)
.+. +..+++..|.+.+. ..+.+..+ ..+++++++.|.|+..- ...+..++.++++.+++|.+..
T Consensus 231 ~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 231 GESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred cchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 222 55578888877643 22334445 67788888888887433 3344566788888888888774
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.52 E-value=0.065 Score=27.23 Aligned_cols=23 Identities=30% Similarity=0.212 Sum_probs=18.0
Q ss_pred CCCcCEEECCCCccccccccccc
Q 047128 4 LTSLVWLRLGKNKLSVDILVSLK 26 (312)
Q Consensus 4 l~~L~~L~L~~n~i~~~~~~~l~ 26 (312)
+++|++|+|++|+|+...+..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 57899999999999855555453
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.52 E-value=0.065 Score=27.23 Aligned_cols=23 Identities=30% Similarity=0.212 Sum_probs=18.0
Q ss_pred CCCcCEEECCCCccccccccccc
Q 047128 4 LTSLVWLRLGKNKLSVDILVSLK 26 (312)
Q Consensus 4 l~~L~~L~L~~n~i~~~~~~~l~ 26 (312)
+++|++|+|++|+|+...+..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 57899999999999855555453
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.91 E-value=0.012 Score=54.05 Aligned_cols=113 Identities=14% Similarity=0.095 Sum_probs=57.0
Q ss_pred CCCCCCEEECcCCCCCCCCC-hhHHhcCCCCcEEEccCC-cccccCC----cCCCCCCCCcEEEccCCC-CCcccchhhH
Q 047128 27 NCTTLESLDVGENEFVGNIP-TWIGERFSRMVVLILRSN-KFHGPLP----TRLCDLPFLQILDIADTN-LSGAIPNWIN 99 (312)
Q Consensus 27 ~l~~L~~L~l~~n~l~~~lp-~~~~~~l~~L~~L~L~~n-~l~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 99 (312)
.++.|+.+.+.++.-..... ..+....++|+.|+++++ ......+ .....+++|+.+++++.. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 35677777777663321211 122235677777777762 1111111 123445677777777765 4433222222
Q ss_pred h-hcccccccccccc-cccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcc
Q 047128 100 N-LTGMVTSCSFTRS-VQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF 160 (312)
Q Consensus 100 ~-l~~L~~l~l~~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i 160 (312)
. .+.|+.+.+..+. ++ ...+......++.|++|+++++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt---------------------~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLT---------------------DEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccc---------------------hhHHHHHHHhcCcccEEeeecCcc
Confidence 2 4566665544333 11 122333445566677777776654
No 79
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=92.08 E-value=0.24 Score=28.01 Aligned_cols=26 Identities=12% Similarity=-0.100 Sum_probs=17.8
Q ss_pred ccceEEEeehhhHHHHHHHhhhheee
Q 047128 283 VDHWLYVSATLGFVVGFWCFMRPLLV 308 (312)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (312)
....+..++++.++++.+++++++++
T Consensus 9 ~~vaIa~~VvVPV~vI~~vl~~~l~~ 34 (40)
T PF08693_consen 9 NTVAIAVGVVVPVGVIIIVLGAFLFF 34 (40)
T ss_pred ceEEEEEEEEechHHHHHHHHHHhhe
Confidence 34457777777777777777666664
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.18 E-value=0.062 Score=26.73 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=8.3
Q ss_pred CCcCEEECCCCccccc
Q 047128 5 TSLVWLRLGKNKLSVD 20 (312)
Q Consensus 5 ~~L~~L~L~~n~i~~~ 20 (312)
++|++|+|++|+|+..
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 5566666666666543
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.94 E-value=0.027 Score=44.57 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=37.1
Q ss_pred CCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccC-CcCC-CCCCCCcEEEccCC-CCCcccchhhHhhcccccc
Q 047128 31 LESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPL-PTRL-CDLPFLQILDIADT-NLSGAIPNWINNLTGMVTS 107 (312)
Q Consensus 31 L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~-~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~l 107 (312)
++.+|-++..|...--+.+. +++.++.|.+.++.--+.. -+.+ +..++|+.|++++| +|+..--..+..+++|+.|
T Consensus 103 IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 45555555555522222232 4555555555554421100 0001 13456677777655 3443333455556666665
Q ss_pred cccc
Q 047128 108 CSFT 111 (312)
Q Consensus 108 ~l~~ 111 (312)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5544
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.53 E-value=0.067 Score=42.41 Aligned_cols=80 Identities=18% Similarity=0.263 Sum_probs=56.4
Q ss_pred ccEEEcCCCcccccCChhhhcCCCCCEEEccCCCC-ccccChhh-cCCCCCcEEECCCc-cCCccCCccccCCCCCCeEe
Q 047128 150 VRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSF-TRRIPESI-GVMTSLESIDFSTN-QLSGEIPESMSSLTFSNHLN 226 (312)
Q Consensus 150 L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l-~~~~p~~~-~~l~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~L~ 226 (312)
++.+|-++..|..+--+.+.+++.++.|.+.++.- ...--+.+ +..++|+.|++++| +||+..-..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 67788888888766667777888888888887753 21111112 24578999999988 58866666677788888777
Q ss_pred ccc
Q 047128 227 LSN 229 (312)
Q Consensus 227 l~~ 229 (312)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 654
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=86.34 E-value=0.52 Score=23.95 Aligned_cols=17 Identities=29% Similarity=0.716 Sum_probs=9.9
Q ss_pred CCCEEECcCCCCCCCCCh
Q 047128 30 TLESLDVGENEFVGNIPT 47 (312)
Q Consensus 30 ~L~~L~l~~n~l~~~lp~ 47 (312)
+|++|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4556666666666 5554
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=85.01 E-value=0.81 Score=23.30 Aligned_cols=13 Identities=38% Similarity=0.647 Sum_probs=5.5
Q ss_pred CCCEEECcCCCCC
Q 047128 30 TLESLDVGENEFV 42 (312)
Q Consensus 30 ~L~~L~l~~n~l~ 42 (312)
+|+.|+++.|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 3444444444443
No 85
>PF15102 TMEM154: TMEM154 protein family
Probab=83.66 E-value=2.4 Score=31.71 Aligned_cols=20 Identities=10% Similarity=0.076 Sum_probs=11.2
Q ss_pred hhHHHHHHHhhhheeeeccC
Q 047128 293 LGFVVGFWCFMRPLLVRRRW 312 (312)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~w 312 (312)
+.++++++++++.+.+.|||
T Consensus 66 VLLvlLLl~vV~lv~~~kRk 85 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRK 85 (146)
T ss_pred HHHHHHHHHHHHheeEEeec
Confidence 33444455555556666776
No 86
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=79.74 E-value=0.83 Score=40.48 Aligned_cols=87 Identities=20% Similarity=0.193 Sum_probs=53.7
Q ss_pred CCCcCEEECCCCc-cccccc-ccccCCCCCCEEECcCCCC-CCCCChhHHhcCCCCcEEEccCCcccccCC-c-CCCCCC
Q 047128 4 LTSLVWLRLGKNK-LSVDIL-VSLKNCTTLESLDVGENEF-VGNIPTWIGERFSRMVVLILRSNKFHGPLP-T-RLCDLP 78 (312)
Q Consensus 4 l~~L~~L~L~~n~-i~~~~~-~~l~~l~~L~~L~l~~n~l-~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~~~l~ 78 (312)
+..+.++++.++. ++...- ..-.++..|++++.+++.- ++..-..++++..+|+.|.++.++--+... . .-.+.+
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~ 346 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP 346 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence 4456667766664 332211 1224678899999988754 323334566788999999999987321111 1 114567
Q ss_pred CCcEEEccCCCC
Q 047128 79 FLQILDIADTNL 90 (312)
Q Consensus 79 ~L~~L~l~~n~l 90 (312)
.|+.+++.....
T Consensus 347 ~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 347 HLERLDLEECGL 358 (483)
T ss_pred hhhhhcccccce
Confidence 899999887754
No 87
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=79.69 E-value=0.61 Score=26.19 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=10.6
Q ss_pred hhHHHHHHHhhhheeeeccC
Q 047128 293 LGFVVGFWCFMRPLLVRRRW 312 (312)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~w 312 (312)
++.+.+..+.+.+....|+|
T Consensus 14 F~lVglv~i~iva~~iYRKw 33 (43)
T PF08114_consen 14 FCLVGLVGIGIVALFIYRKW 33 (43)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555666666
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=78.24 E-value=1.9 Score=22.24 Aligned_cols=13 Identities=54% Similarity=0.519 Sum_probs=6.3
Q ss_pred CcCEEECCCCccc
Q 047128 6 SLVWLRLGKNKLS 18 (312)
Q Consensus 6 ~L~~L~L~~n~i~ 18 (312)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4445555555443
No 89
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=78.20 E-value=0.49 Score=32.10 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=22.7
Q ss_pred cceEEEeehhhHHHHHHHhhhheeeeccC
Q 047128 284 DHWLYVSATLGFVVGFWCFMRPLLVRRRW 312 (312)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 312 (312)
.+|.+++.+-|++++++++..+++.+.||
T Consensus 40 ayWpyLA~GGG~iLilIii~Lv~CC~~K~ 68 (98)
T PF07204_consen 40 AYWPYLAAGGGLILILIIIALVCCCRAKH 68 (98)
T ss_pred hhhHHhhccchhhhHHHHHHHHHHhhhhh
Confidence 37888888888888887777777777766
No 90
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=77.34 E-value=5.1 Score=30.30 Aligned_cols=16 Identities=19% Similarity=0.511 Sum_probs=6.9
Q ss_pred HHHHHHhhhheeeecc
Q 047128 296 VVGFWCFMRPLLVRRR 311 (312)
Q Consensus 296 ~~~~~~~~~~~~~~~~ 311 (312)
+++++++++++++++|
T Consensus 63 ll~il~lvf~~c~r~k 78 (154)
T PF04478_consen 63 LLGILALVFIFCIRRK 78 (154)
T ss_pred HHHHHHhheeEEEecc
Confidence 3333444444444443
No 91
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=77.23 E-value=1.8 Score=34.53 Aligned_cols=28 Identities=11% Similarity=0.111 Sum_probs=15.6
Q ss_pred CCccceEEEeehhhHHHHHHHhhhheee
Q 047128 281 DEVDHWLYVSATLGFVVGFWCFMRPLLV 308 (312)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (312)
.....+++++++.|++.++++++++.+.
T Consensus 33 ~~d~~~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 33 SKDYVKIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred cccceeeeeeeecchhhhHHHHHHHHHH
Confidence 3455667777776666555444443333
No 92
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=77.08 E-value=1.3 Score=39.23 Aligned_cols=63 Identities=14% Similarity=0.036 Sum_probs=38.8
Q ss_pred CCCCCCEEECcCC-CCCCCCChhHHhcCCCCcEEEccCCcccccC--CcCCCCCCCCcEEEccCCC
Q 047128 27 NCTTLESLDVGEN-EFVGNIPTWIGERFSRMVVLILRSNKFHGPL--PTRLCDLPFLQILDIADTN 89 (312)
Q Consensus 27 ~l~~L~~L~l~~n-~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~ 89 (312)
.+..+.++++.++ .+++.--..+...+..|+.|+.+++.-.+.. ..--.+.++|+.+.++.++
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ 331 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc
Confidence 4556777777666 3442211223345789999999886543111 1113567899999999876
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.50 E-value=1.6 Score=40.09 Aligned_cols=63 Identities=24% Similarity=0.285 Sum_probs=33.0
Q ss_pred cCCCCCEEEccCCCCccc--cChhhcCCCCCcEEECCCc--cCCccCCc--cccCCCCCCeEecccCcccc
Q 047128 170 NLKALHSLNFSYNSFTRR--IPESIGVMTSLESIDFSTN--QLSGEIPE--SMSSLTFSNHLNLSNNNLTG 234 (312)
Q Consensus 170 ~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~l~~N--~l~~~~p~--~~~~l~~L~~L~l~~N~l~~ 234 (312)
+.+.+..++|++|++... +...-...|+|+.|+|++| .+. ..++ .++ ...|++|-+.+|++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k-~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLK-GLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chhhhhhhc-CCCHHHeeecCCcccc
Confidence 456666777777766411 1111234567777777777 333 1111 122 2336667777776653
No 94
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=75.10 E-value=1.9 Score=39.48 Aligned_cols=88 Identities=20% Similarity=0.218 Sum_probs=59.8
Q ss_pred CCCCcCEEECCCC--ccccc---ccccccCCCCCCEEECcCCC-CCCCCChhHHhcCCCCcEEEccCCc-cccc-CCcCC
Q 047128 3 SLTSLVWLRLGKN--KLSVD---ILVSLKNCTTLESLDVGENE-FVGNIPTWIGERFSRMVVLILRSNK-FHGP-LPTRL 74 (312)
Q Consensus 3 ~l~~L~~L~L~~n--~i~~~---~~~~l~~l~~L~~L~l~~n~-l~~~lp~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~ 74 (312)
.++.|+.|+++++ .+... .......+++|+.++++.+. +++..=..+...+++|+.|.+.++. ++.. +-...
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~ 291 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA 291 (482)
T ss_pred hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH
Confidence 5788999999873 22211 12344568899999999998 6644344555458999999987777 4421 11223
Q ss_pred CCCCCCcEEEccCCCC
Q 047128 75 CDLPFLQILDIADTNL 90 (312)
Q Consensus 75 ~~l~~L~~L~l~~n~l 90 (312)
..++.|++|+++++..
T Consensus 292 ~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 292 ERCPSLRELDLSGCHG 307 (482)
T ss_pred HhcCcccEEeeecCcc
Confidence 5678899999998764
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.83 E-value=2.3 Score=39.17 Aligned_cols=62 Identities=19% Similarity=0.210 Sum_probs=37.4
Q ss_pred CCCCCCEEECcCCCCCCCCC--hhHHhcCCCCcEEEccCC--cccccCCcCCC--CCCCCcEEEccCCCCC
Q 047128 27 NCTTLESLDVGENEFVGNIP--TWIGERFSRMVVLILRSN--KFHGPLPTRLC--DLPFLQILDIADTNLS 91 (312)
Q Consensus 27 ~l~~L~~L~l~~n~l~~~lp--~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~--~l~~L~~L~l~~n~l~ 91 (312)
+.+.+..++|++|++. .+. ..+.+.-|+|++|+|++| .+.. ..++. +...|+.|-+.+|.+.
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccc
Confidence 4566777778888776 444 234445678888888887 3331 11121 2234777778888764
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=74.01 E-value=2.1 Score=46.92 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=19.8
Q ss_pred ECCCccCCccCCccccCCCCCCeEecccCcccccCC
Q 047128 202 DFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIP 237 (312)
Q Consensus 202 ~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~ 237 (312)
||++|+|+...+..|..+++|+.|+|++|++.|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence 355566653333455555566666666666665544
No 97
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=72.71 E-value=0.86 Score=30.15 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=12.9
Q ss_pred EEeehhhHHHHHHHhhhheeeecc
Q 047128 288 YVSATLGFVVGFWCFMRPLLVRRR 311 (312)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
.+++++|+++++++++++++++||
T Consensus 3 i~~~~~g~~~ll~~v~~~~~~~rr 26 (75)
T PF14575_consen 3 IASIIVGVLLLLVLVIIVIVCFRR 26 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCTT
T ss_pred EehHHHHHHHHHHhheeEEEEEee
Confidence 344555555555555555555554
No 98
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=69.72 E-value=4.8 Score=28.04 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=2.8
Q ss_pred heeeecc
Q 047128 305 PLLVRRR 311 (312)
Q Consensus 305 ~~~~~~~ 311 (312)
+|++|||
T Consensus 89 ~f~~r~k 95 (96)
T PTZ00382 89 WFVCRGK 95 (96)
T ss_pred eeEEeec
Confidence 3344443
No 99
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=66.24 E-value=1.9 Score=36.58 Aligned_cols=26 Identities=8% Similarity=0.082 Sum_probs=0.0
Q ss_pred eEEEeehhhHHHHHHHhhhheeeecc
Q 047128 286 WLYVSATLGFVVGFWCFMRPLLVRRR 311 (312)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
.++.+|++.++++++++|+|++|+||
T Consensus 148 T~IpaVVI~~iLLIA~iIa~icyrrk 173 (290)
T PF05454_consen 148 TFIPAVVIAAILLIAGIIACICYRRK 173 (290)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 35567777777777777888888765
No 100
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=64.64 E-value=2 Score=30.38 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhhheeeecc
Q 047128 292 TLGFVVGFWCFMRPLLVRRR 311 (312)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~ 311 (312)
++.++++++++++|++++||
T Consensus 31 iL~VILgiLLliGCWYckRR 50 (118)
T PF14991_consen 31 ILIVILGILLLIGCWYCKRR 50 (118)
T ss_dssp --------------------
T ss_pred eHHHHHHHHHHHhheeeeec
Confidence 34455566778888888887
No 101
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=63.30 E-value=1.3 Score=24.66 Aligned_cols=20 Identities=10% Similarity=0.268 Sum_probs=7.6
Q ss_pred ehhhHHHHHHHhhhheeeec
Q 047128 291 ATLGFVVGFWCFMRPLLVRR 310 (312)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~ 310 (312)
+++|+++..++.+...+.+|
T Consensus 12 V~vg~~iiii~~~~YaCcyk 31 (38)
T PF02439_consen 12 VVVGMAIIIICMFYYACCYK 31 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 33344433333333333333
No 102
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=61.47 E-value=6.5 Score=43.46 Aligned_cols=32 Identities=25% Similarity=0.246 Sum_probs=26.8
Q ss_pred ECCCCcccccccccccCCCCCCEEECcCCCCC
Q 047128 11 RLGKNKLSVDILVSLKNCTTLESLDVGENEFV 42 (312)
Q Consensus 11 ~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~ 42 (312)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57889998777778888889999999998875
No 103
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=58.73 E-value=14 Score=28.02 Aligned_cols=27 Identities=7% Similarity=-0.006 Sum_probs=19.5
Q ss_pred cceEEEeehhhHHHHHHHhhhheeeec
Q 047128 284 DHWLYVSATLGFVVGFWCFMRPLLVRR 310 (312)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
.+-++++|++|+.+.+++++++++|+.
T Consensus 47 nknIVIGvVVGVGg~ill~il~lvf~~ 73 (154)
T PF04478_consen 47 NKNIVIGVVVGVGGPILLGILALVFIF 73 (154)
T ss_pred CccEEEEEEecccHHHHHHHHHhheeE
Confidence 345889999998777777766666643
No 104
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=58.24 E-value=3.4 Score=26.11 Aligned_cols=6 Identities=17% Similarity=0.683 Sum_probs=0.0
Q ss_pred hhhHHH
Q 047128 292 TLGFVV 297 (312)
Q Consensus 292 ~~~~~~ 297 (312)
++|+++
T Consensus 19 Vvgll~ 24 (64)
T PF01034_consen 19 VVGLLF 24 (64)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333333
No 105
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=56.59 E-value=5.6 Score=27.72 Aligned_cols=26 Identities=8% Similarity=-0.203 Sum_probs=16.6
Q ss_pred eEEEeehhhHHHHHHHhhhheeeecc
Q 047128 286 WLYVSATLGFVVGFWCFMRPLLVRRR 311 (312)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
..+.++++++++++.+++.++++|+.
T Consensus 66 gaiagi~vg~~~~v~~lv~~l~w~f~ 91 (96)
T PTZ00382 66 GAIAGISVAVVAVVGGLVGFLCWWFV 91 (96)
T ss_pred ccEEEEEeehhhHHHHHHHHHhheeE
Confidence 35666667666666666666666654
No 106
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=53.15 E-value=9.9 Score=18.96 Aligned_cols=11 Identities=27% Similarity=0.121 Sum_probs=5.3
Q ss_pred CCcCEEECCCC
Q 047128 5 TSLVWLRLGKN 15 (312)
Q Consensus 5 ~~L~~L~L~~n 15 (312)
++|+.|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44444444444
No 107
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=46.34 E-value=7.1 Score=33.73 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=5.2
Q ss_pred Hhhhheeeecc
Q 047128 301 CFMRPLLVRRR 311 (312)
Q Consensus 301 ~~~~~~~~~~~ 311 (312)
++|++++.|||
T Consensus 288 vLiaYli~Rrr 298 (306)
T PF01299_consen 288 VLIAYLIGRRR 298 (306)
T ss_pred HHHhheeEecc
Confidence 33444455554
No 108
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=44.43 E-value=22 Score=21.79 Aligned_cols=23 Identities=9% Similarity=0.140 Sum_probs=13.6
Q ss_pred EEEeehhhHHHHHHHhhhheeee
Q 047128 287 LYVSATLGFVVGFWCFMRPLLVR 309 (312)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~ 309 (312)
-+..+++.++++++++|++++|.
T Consensus 29 kv~tVVlP~l~~~~~~Ivv~vy~ 51 (56)
T PF15012_consen 29 KVFTVVLPTLAAVFLFIVVFVYL 51 (56)
T ss_pred hheeEehhHHHHHHHHHhheeEE
Confidence 34455666666666666666653
No 109
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=42.68 E-value=6.5 Score=24.17 Aligned_cols=20 Identities=25% Similarity=0.659 Sum_probs=14.7
Q ss_pred cceEEEeehhhHHHHHHHhh
Q 047128 284 DHWLYVSATLGFVVGFWCFM 303 (312)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~ 303 (312)
..|+++.+++|+++|.++++
T Consensus 4 ~~wlIIviVlgvIigNia~L 23 (55)
T PF11446_consen 4 NPWLIIVIVLGVIIGNIAAL 23 (55)
T ss_pred hhhHHHHHHHHHHHhHHHHH
Confidence 45777778888888877664
No 110
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=42.20 E-value=5.3 Score=29.14 Aligned_cols=11 Identities=18% Similarity=0.582 Sum_probs=4.2
Q ss_pred EeehhhHHHHH
Q 047128 289 VSATLGFVVGF 299 (312)
Q Consensus 289 ~~~~~~~~~~~ 299 (312)
.++++|+++|+
T Consensus 67 ~~Ii~gv~aGv 77 (122)
T PF01102_consen 67 IGIIFGVMAGV 77 (122)
T ss_dssp HHHHHHHHHHH
T ss_pred eehhHHHHHHH
Confidence 33334433333
No 111
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=39.72 E-value=6 Score=28.88 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=14.8
Q ss_pred cceEEEeehhhHHHHHHHhhhheeeecc
Q 047128 284 DHWLYVSATLGFVVGFWCFMRPLLVRRR 311 (312)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
..+++++|++|++ +++++|++++.|||
T Consensus 66 i~~Ii~gv~aGvI-g~Illi~y~irR~~ 92 (122)
T PF01102_consen 66 IIGIIFGVMAGVI-GIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHS
T ss_pred eeehhHHHHHHHH-HHHHHHHHHHHHHh
Confidence 3456666666664 45555555555443
No 112
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=39.49 E-value=13 Score=23.81 Aligned_cols=29 Identities=14% Similarity=0.442 Sum_probs=22.0
Q ss_pred ccceEEEeehhhHHHHHHHhhhheeeecc
Q 047128 283 VDHWLYVSATLGFVVGFWCFMRPLLVRRR 311 (312)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
...|..++++.+++++++..+.=++|++|
T Consensus 30 p~qW~aIGvi~gi~~~~lt~ltN~YFK~k 58 (68)
T PF04971_consen 30 PSQWAAIGVIGGIFFGLLTYLTNLYFKIK 58 (68)
T ss_pred cccchhHHHHHHHHHHHHHHHhHhhhhhh
Confidence 34688888888888888888777777654
No 113
>PRK14762 membrane protein; Provisional
Probab=36.29 E-value=10 Score=18.82 Aligned_cols=20 Identities=10% Similarity=0.283 Sum_probs=12.5
Q ss_pred EEEeehhhHHHHHHHhhhhe
Q 047128 287 LYVSATLGFVVGFWCFMRPL 306 (312)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~ 306 (312)
+.|++++.+.++++++.+++
T Consensus 4 ~lw~i~iifligllvvtgvf 23 (27)
T PRK14762 4 ILWAVLIIFLIGLLVVTGVF 23 (27)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566677777776665554
No 114
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=34.83 E-value=19 Score=32.36 Aligned_cols=24 Identities=13% Similarity=-0.103 Sum_probs=10.9
Q ss_pred eEEEeehhhHHHHHHHhhhheeee
Q 047128 286 WLYVSATLGFVVGFWCFMRPLLVR 309 (312)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~ 309 (312)
-.+.+|++++||++..++.++.+|
T Consensus 367 gaIaGIsvavvvvVgglvGfLcWw 390 (397)
T PF03302_consen 367 GAIAGISVAVVVVVGGLVGFLCWW 390 (397)
T ss_pred cceeeeeehhHHHHHHHHHHHhhh
Confidence 344555555444444444444433
No 115
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=34.33 E-value=33 Score=26.96 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=5.7
Q ss_pred eEEEeehhhHHHH
Q 047128 286 WLYVSATLGFVVG 298 (312)
Q Consensus 286 ~~~~~~~~~~~~~ 298 (312)
+++++|+++++++
T Consensus 79 ~iivgvi~~Vi~I 91 (179)
T PF13908_consen 79 GIIVGVICGVIAI 91 (179)
T ss_pred eeeeehhhHHHHH
Confidence 3444444444443
No 116
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=31.54 E-value=8.1 Score=29.24 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=13.0
Q ss_pred EEeehhhHHHHHHHhhhheeeeccC
Q 047128 288 YVSATLGFVVGFWCFMRPLLVRRRW 312 (312)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~w 312 (312)
.+++++++++++++++...++|+-|
T Consensus 120 ~i~~~i~g~ll~i~~giy~~~r~~~ 144 (145)
T PF10661_consen 120 TILLSIGGILLAICGGIYVVLRKVW 144 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444555555555556655
No 117
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=30.96 E-value=34 Score=27.16 Aligned_cols=21 Identities=14% Similarity=0.022 Sum_probs=14.1
Q ss_pred ceEEEeehhhHHHHHHHhhhh
Q 047128 285 HWLYVSATLGFVVGFWCFMRP 305 (312)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~ 305 (312)
.++.++|++.++|++++++++
T Consensus 156 ~~~~laI~lPvvv~~~~~~~~ 176 (189)
T PF14610_consen 156 GKYALAIALPVVVVVLALIMY 176 (189)
T ss_pred cceeEEEEccHHHHHHHHHHH
Confidence 677777777777776555433
No 118
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=29.43 E-value=18 Score=29.97 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=0.0
Q ss_pred CCCcCCccceEEEeehhhHHHHHHHhhhheeeecc
Q 047128 277 DEDEDEVDHWLYVSATLGFVVGFWCFMRPLLVRRR 311 (312)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
+...+....|..+++...+..++.+++++++++|+
T Consensus 206 g~~~~~slq~~~iAL~sl~SLVIGFvlG~l~WKkk 240 (273)
T PF02404_consen 206 GSISDSSLQWPAIALPSLFSLVIGFVLGALYWKKK 240 (273)
T ss_dssp -----------------------------------
T ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445566677666665555555556666665543
No 119
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=29.13 E-value=68 Score=18.74 Aligned_cols=19 Identities=16% Similarity=0.315 Sum_probs=9.3
Q ss_pred eEEEeehhhHHHHHHHhhh
Q 047128 286 WLYVSATLGFVVGFWCFMR 304 (312)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~ 304 (312)
|.+++.++..++.++++++
T Consensus 2 Wl~V~~iilg~~ll~~Lig 20 (49)
T PF05624_consen 2 WLFVVLIILGALLLLLLIG 20 (49)
T ss_pred eEEEeHHHHHHHHHHHHHH
Confidence 5555555544444444443
No 120
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=29.02 E-value=18 Score=24.24 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=9.6
Q ss_pred ccceEEEeehhhHHHHHH
Q 047128 283 VDHWLYVSATLGFVVGFW 300 (312)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~ 300 (312)
...|+++.++-++.++++
T Consensus 13 p~~~yyiiA~gga~llL~ 30 (87)
T PF11980_consen 13 PPYWYYIIAMGGALLLLV 30 (87)
T ss_pred CceeeHHHhhccHHHHHH
Confidence 345666655555554443
No 121
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=28.69 E-value=69 Score=25.76 Aligned_cols=8 Identities=38% Similarity=0.642 Sum_probs=4.4
Q ss_pred heeeeccC
Q 047128 305 PLLVRRRW 312 (312)
Q Consensus 305 ~~~~~~~w 312 (312)
++.-||+|
T Consensus 123 ~~~~Rrs~ 130 (202)
T PF06365_consen 123 CCHQRRSW 130 (202)
T ss_pred HhhhhccC
Confidence 44456666
No 122
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=28.42 E-value=49 Score=24.77 Aligned_cols=24 Identities=8% Similarity=-0.063 Sum_probs=13.9
Q ss_pred CccceEEEeehhhHHHHHHHhhhh
Q 047128 282 EVDHWLYVSATLGFVVGFWCFMRP 305 (312)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~ 305 (312)
......+.++++|.|+++.++.++
T Consensus 57 ~lsgtAIaGIVfgiVfimgvva~i 80 (155)
T PF10873_consen 57 VLSGTAIAGIVFGIVFIMGVVAGI 80 (155)
T ss_pred ccccceeeeeehhhHHHHHHHHHH
Confidence 334556667777776666554443
No 123
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=27.24 E-value=47 Score=31.53 Aligned_cols=24 Identities=8% Similarity=0.260 Sum_probs=15.7
Q ss_pred cCCccceEEEeehhhHHHHHHHhh
Q 047128 280 EDEVDHWLYVSATLGFVVGFWCFM 303 (312)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~ 303 (312)
......|++++|++.+++++++++
T Consensus 264 s~~~NlWII~gVlvPv~vV~~Iii 287 (684)
T PF12877_consen 264 SPPNNLWIIAGVLVPVLVVLLIII 287 (684)
T ss_pred CCCCCeEEEehHhHHHHHHHHHHH
Confidence 344567888888777666654443
No 124
>PRK10132 hypothetical protein; Provisional
Probab=27.08 E-value=38 Score=24.21 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=8.7
Q ss_pred eehhhHHHHHHHhhhheeeecc
Q 047128 290 SATLGFVVGFWCFMRPLLVRRR 311 (312)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
+++++++||+ ++++++.+||
T Consensus 89 svgiaagvG~--llG~Ll~RR~ 108 (108)
T PRK10132 89 SVGTAAAVGI--FIGALLSLRK 108 (108)
T ss_pred HHHHHHHHHH--HHHHHHhccC
Confidence 3334444443 3444455554
No 125
>PF10808 DUF2542: Protein of unknown function (DUF2542) ; InterPro: IPR020155 This entry represents transmembrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=25.72 E-value=22 Score=23.14 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=24.8
Q ss_pred CcCCccceEEEeehhhHHHHHHHhhhheeeec
Q 047128 279 DEDEVDHWLYVSATLGFVVGFWCFMRPLLVRR 310 (312)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
++++...|.++.+=+|+.++.+..+..++|.|
T Consensus 48 ~~~P~~ywsYi~~Y~G~gil~~gm~IyllFyR 79 (79)
T PF10808_consen 48 AKNPGQYWSYIFAYFGCGILSLGMIIYLLFYR 79 (79)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHhheeEEeC
Confidence 34566788888888888888888888877765
No 126
>PTZ00370 STEVOR; Provisional
Probab=25.69 E-value=25 Score=29.73 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=11.2
Q ss_pred eehhhHHHHHHHhhhheeeecc
Q 047128 290 SATLGFVVGFWCFMRPLLVRRR 311 (312)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
++|+..++++++++++++||||
T Consensus 261 alvllil~vvliilYiwlyrrR 282 (296)
T PTZ00370 261 ALVLLILAVVLIILYIWLYRRR 282 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3333334444555566666665
No 127
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=25.55 E-value=25 Score=29.66 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=11.3
Q ss_pred eehhhHHHHHHHhhhheeeecc
Q 047128 290 SATLGFVVGFWCFMRPLLVRRR 311 (312)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
++|+..++++++++++++||||
T Consensus 265 alvllil~vvliiLYiWlyrrR 286 (295)
T TIGR01478 265 ALVLIILTVVLIILYIWLYRRR 286 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444555566666665
No 128
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=25.23 E-value=24 Score=27.06 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=0.0
Q ss_pred cceEEEeehhhHHHHHH
Q 047128 284 DHWLYVSATLGFVVGFW 300 (312)
Q Consensus 284 ~~~~~~~~~~~~~~~~~ 300 (312)
....++++++|+++++.
T Consensus 127 ~T~tLVGIIVGVLlaIG 143 (162)
T PF05808_consen 127 STVTLVGIIVGVLLAIG 143 (162)
T ss_dssp -----------------
T ss_pred ceeeeeeehhhHHHHHH
Confidence 34455666666555553
No 129
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=25.15 E-value=33 Score=23.52 Aligned_cols=10 Identities=20% Similarity=0.391 Sum_probs=4.0
Q ss_pred hhhheeeecc
Q 047128 302 FMRPLLVRRR 311 (312)
Q Consensus 302 ~~~~~~~~~~ 311 (312)
+.++++++||
T Consensus 82 ~~v~yI~~rR 91 (92)
T PF03908_consen 82 LVVLYILWRR 91 (92)
T ss_pred HHHHHHhhhc
Confidence 3333444443
No 130
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=21.49 E-value=42 Score=19.88 Aligned_cols=15 Identities=13% Similarity=0.000 Sum_probs=6.2
Q ss_pred HHHHHHhhhheeeec
Q 047128 296 VVGFWCFMRPLLVRR 310 (312)
Q Consensus 296 ~~~~~~~~~~~~~~~ 310 (312)
.+++++.+++.++++
T Consensus 18 ~~~~F~gi~~w~~~~ 32 (49)
T PF05545_consen 18 FFVFFIGIVIWAYRP 32 (49)
T ss_pred HHHHHHHHHHHHHcc
Confidence 333344444444443
No 131
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=20.64 E-value=93 Score=26.82 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=6.7
Q ss_pred EEEeehhhHHHHHHHhh
Q 047128 287 LYVSATLGFVVGFWCFM 303 (312)
Q Consensus 287 ~~~~~~~~~~~~~~~~~ 303 (312)
+++.|+++.+++.++++
T Consensus 199 ~lv~Iv~~cvaG~aAli 215 (341)
T PF06809_consen 199 TLVLIVVCCVAGAAALI 215 (341)
T ss_pred eeehhHHHHHHHHHHHH
Confidence 33344444444443333
Done!