Query 047128
Match_columns 312
No_of_seqs 254 out of 3042
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 13:40:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.3E-36 1.1E-40 289.1 19.5 263 3-267 440-751 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 2.7E-35 9.3E-40 254.0 15.4 256 5-264 50-312 (313)
3 3rgz_A Protein brassinosteroid 100.0 1.3E-32 4.3E-37 264.2 20.7 255 4-259 393-720 (768)
4 3v47_A TOLL-like receptor 5B a 100.0 8E-31 2.7E-35 237.4 21.1 117 2-119 51-171 (455)
5 3v47_A TOLL-like receptor 5B a 100.0 4.1E-30 1.4E-34 232.8 20.9 256 5-260 30-388 (455)
6 1ogq_A PGIP-2, polygalacturona 100.0 3E-31 1E-35 228.7 11.2 231 1-234 72-305 (313)
7 4fcg_A Uncharacterized protein 100.0 1.4E-30 4.8E-35 225.8 15.0 226 4-257 80-315 (328)
8 3zyj_A Leucine-rich repeat-con 100.0 1E-29 3.5E-34 229.2 20.0 227 5-255 64-291 (440)
9 3zyi_A Leucine-rich repeat-con 100.0 9.2E-30 3.1E-34 230.3 19.2 227 5-255 75-302 (452)
10 2id5_A Lingo-1, leucine rich r 100.0 6.7E-30 2.3E-34 232.8 18.3 255 1-256 52-333 (477)
11 2id5_A Lingo-1, leucine rich r 100.0 1.3E-29 4.6E-34 230.8 18.7 238 1-239 76-339 (477)
12 1xku_A Decorin; proteoglycan, 100.0 8.7E-29 3E-33 214.9 22.9 235 5-266 52-286 (330)
13 3o6n_A APL1; leucine-rich repe 100.0 5.9E-29 2E-33 220.8 19.5 249 2-255 66-351 (390)
14 1xku_A Decorin; proteoglycan, 100.0 1.5E-28 5.1E-33 213.4 21.0 226 1-256 72-306 (330)
15 2z66_A Variable lymphocyte rec 100.0 3.5E-29 1.2E-33 215.1 16.6 227 5-256 28-261 (306)
16 3o6n_A APL1; leucine-rich repe 100.0 2.7E-29 9.1E-34 223.1 15.9 252 4-259 44-334 (390)
17 1ozn_A Reticulon 4 receptor; N 100.0 1.8E-29 6.1E-34 214.8 14.0 210 5-237 32-242 (285)
18 3t6q_A CD180 antigen; protein- 100.0 3.8E-29 1.3E-33 234.3 17.3 256 1-259 274-539 (606)
19 3oja_B Anopheles plasmodium-re 100.0 6.1E-29 2.1E-33 232.4 17.3 250 2-256 72-358 (597)
20 2ft3_A Biglycan; proteoglycan, 100.0 1.9E-28 6.6E-33 212.9 19.1 242 5-256 54-307 (332)
21 4fcg_A Uncharacterized protein 100.0 7.2E-29 2.5E-33 215.1 15.5 205 2-233 101-314 (328)
22 3zyi_A Leucine-rich repeat-con 100.0 2.8E-28 9.5E-33 220.6 19.9 212 1-237 95-307 (452)
23 3zyj_A Leucine-rich repeat-con 100.0 2.9E-28 9.9E-33 219.7 19.9 212 1-237 84-296 (440)
24 2z66_A Variable lymphocyte rec 100.0 9.3E-29 3.2E-33 212.4 14.6 214 1-237 48-265 (306)
25 3t6q_A CD180 antigen; protein- 100.0 9.3E-28 3.2E-32 224.9 22.4 254 1-256 53-389 (606)
26 3j0a_A TOLL-like receptor 5; m 100.0 6.3E-29 2.1E-33 240.9 14.9 228 5-234 266-518 (844)
27 2ft3_A Biglycan; proteoglycan, 100.0 1.9E-28 6.4E-33 213.0 16.2 251 5-266 33-287 (332)
28 2z62_A TOLL-like receptor 4, v 100.0 6.2E-28 2.1E-32 204.3 17.2 211 6-239 29-243 (276)
29 2z7x_B TOLL-like receptor 1, v 100.0 6E-28 2.1E-32 222.2 18.3 114 145-259 321-437 (520)
30 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-27 5.2E-32 231.2 21.8 110 148-257 266-376 (844)
31 1ozn_A Reticulon 4 receptor; N 100.0 9.7E-28 3.3E-32 204.0 18.1 223 8-256 14-238 (285)
32 4eco_A Uncharacterized protein 100.0 1.5E-28 5E-33 231.2 14.1 244 3-252 247-545 (636)
33 4g8a_A TOLL-like receptor 4; l 100.0 1.8E-27 6.2E-32 223.6 21.0 114 1-115 72-186 (635)
34 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.7E-27 5.8E-32 221.2 19.6 113 145-258 350-465 (562)
35 3vq2_A TLR4, TOLL-like recepto 100.0 4.2E-27 1.4E-31 220.4 21.2 115 1-116 52-167 (606)
36 2z80_A TOLL-like receptor 2, v 100.0 1.6E-28 5.5E-33 215.2 10.7 228 6-257 53-315 (353)
37 4eco_A Uncharacterized protein 100.0 1.1E-27 3.9E-32 225.2 16.2 253 1-260 269-583 (636)
38 1ziw_A TOLL-like receptor 3; i 100.0 2.3E-27 8E-32 225.0 18.1 110 6-116 26-135 (680)
39 2z81_A CD282 antigen, TOLL-lik 100.0 4E-27 1.4E-31 218.0 19.2 119 1-120 46-166 (549)
40 2o6q_A Variable lymphocyte rec 99.9 1.4E-26 4.8E-31 195.4 19.8 207 6-238 17-223 (270)
41 2z80_A TOLL-like receptor 2, v 99.9 1.2E-27 4.2E-32 209.6 13.7 234 1-238 72-319 (353)
42 3oja_B Anopheles plasmodium-re 99.9 3E-27 1E-31 220.9 16.3 253 4-260 50-341 (597)
43 1ziw_A TOLL-like receptor 3; i 99.9 2.1E-26 7E-31 218.5 22.0 255 2-256 326-597 (680)
44 4ecn_A Leucine-rich repeat pro 99.9 4E-27 1.4E-31 226.3 16.9 209 5-233 323-632 (876)
45 1wwl_A Monocyte differentiatio 99.9 2.6E-27 8.9E-32 204.0 14.1 201 4-256 94-309 (312)
46 2o6q_A Variable lymphocyte rec 99.9 4.5E-26 1.5E-30 192.2 21.0 200 30-255 17-217 (270)
47 1p9a_G Platelet glycoprotein I 99.9 1.8E-26 6.2E-31 196.5 18.6 205 2-236 7-211 (290)
48 3vq2_A TLR4, TOLL-like recepto 99.9 5.3E-27 1.8E-31 219.7 16.7 229 2-255 304-557 (606)
49 2z7x_B TOLL-like receptor 1, v 99.9 4.6E-27 1.6E-31 216.2 15.7 89 169-257 321-413 (520)
50 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-26 4E-31 215.6 17.7 250 5-258 52-443 (562)
51 3m19_A Variable lymphocyte rec 99.9 1.8E-26 6.3E-31 192.5 16.7 214 6-269 15-234 (251)
52 3o53_A Protein LRIM1, AGAP0063 99.9 6.5E-27 2.2E-31 201.9 13.4 218 3-256 32-250 (317)
53 4ecn_A Leucine-rich repeat pro 99.9 4.4E-26 1.5E-30 219.1 20.3 251 1-260 511-823 (876)
54 4fmz_A Internalin; leucine ric 99.9 6.3E-26 2.2E-30 198.1 19.7 244 1-260 84-328 (347)
55 3oja_A Leucine-rich immune mol 99.9 1.2E-26 4.1E-31 211.4 14.7 218 3-256 32-250 (487)
56 3rfs_A Internalin B, repeat mo 99.9 3.2E-26 1.1E-30 193.3 16.3 197 4-257 40-236 (272)
57 2z62_A TOLL-like receptor 4, v 99.9 1.2E-25 4.2E-30 190.2 18.1 221 9-256 11-237 (276)
58 4fmz_A Internalin; leucine ric 99.9 2.4E-25 8.1E-30 194.5 20.0 241 2-259 63-303 (347)
59 2z81_A CD282 antigen, TOLL-lik 99.9 9E-26 3.1E-30 208.9 18.2 232 1-234 70-424 (549)
60 2z63_A TOLL-like receptor 4, v 99.9 1.4E-25 4.8E-30 208.5 18.2 247 2-257 279-532 (570)
61 2z63_A TOLL-like receptor 4, v 99.9 2.4E-25 8.1E-30 206.9 19.7 115 1-116 48-163 (570)
62 4g8a_A TOLL-like receptor 4; l 99.9 1.8E-25 6.3E-30 209.9 18.8 110 6-116 53-162 (635)
63 1p9a_G Platelet glycoprotein I 99.9 2.5E-25 8.6E-30 189.4 17.8 178 5-209 31-208 (290)
64 4glp_A Monocyte differentiatio 99.9 1.4E-25 4.9E-30 192.9 15.0 199 6-256 92-307 (310)
65 1o6v_A Internalin A; bacterial 99.9 7.5E-25 2.6E-29 198.8 20.2 86 169-259 284-369 (466)
66 2xwt_C Thyrotropin receptor; s 99.9 6.5E-26 2.2E-30 187.8 11.9 196 30-253 32-236 (239)
67 3o53_A Protein LRIM1, AGAP0063 99.9 8.8E-27 3E-31 201.1 6.5 222 1-258 54-278 (317)
68 1o6v_A Internalin A; bacterial 99.9 6.8E-25 2.3E-29 199.1 18.7 109 144-259 239-347 (466)
69 1wwl_A Monocyte differentiatio 99.9 6.7E-27 2.3E-31 201.4 4.8 228 4-260 42-291 (312)
70 3bz5_A Internalin-J, INLJ; leu 99.9 2.9E-24 9.9E-29 194.1 19.0 225 3-253 40-264 (457)
71 3rfs_A Internalin B, repeat mo 99.9 1E-24 3.5E-29 184.1 14.4 182 2-239 60-241 (272)
72 3oja_A Leucine-rich immune mol 99.9 1.1E-24 3.8E-29 198.5 14.2 215 1-251 54-270 (487)
73 1h6u_A Internalin H; cell adhe 99.9 2.7E-24 9.1E-29 184.7 15.3 194 4-236 40-233 (308)
74 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-23 4.7E-28 189.7 19.8 189 2-212 61-249 (457)
75 3m19_A Variable lymphocyte rec 99.9 9.5E-24 3.3E-28 176.0 17.4 179 30-258 15-194 (251)
76 2ca6_A RAN GTPase-activating p 99.9 5.3E-26 1.8E-30 201.6 3.7 239 3-259 30-319 (386)
77 4glp_A Monocyte differentiatio 99.9 4.8E-25 1.7E-29 189.6 9.5 209 29-264 64-293 (310)
78 3goz_A Leucine-rich repeat-con 99.9 1.7E-24 5.8E-29 190.2 7.0 236 4-258 21-299 (362)
79 1h6u_A Internalin H; cell adhe 99.9 9.3E-23 3.2E-27 175.1 17.1 177 2-216 60-236 (308)
80 2ast_B S-phase kinase-associat 99.9 2.4E-23 8.1E-28 180.9 11.0 232 5-262 70-312 (336)
81 2xwt_C Thyrotropin receptor; s 99.9 5.9E-23 2E-27 170.0 12.1 197 5-230 31-236 (239)
82 2ca6_A RAN GTPase-activating p 99.9 1.3E-23 4.6E-28 186.1 7.5 219 1-237 56-320 (386)
83 2v9t_B SLIT homolog 2 protein 99.9 3.7E-22 1.3E-26 163.0 14.7 156 32-237 14-169 (220)
84 2v70_A SLIT-2, SLIT homolog 2 99.9 2.7E-22 9.2E-27 163.8 13.6 156 32-237 14-170 (220)
85 1jl5_A Outer protein YOPM; leu 99.9 1.4E-21 4.6E-26 176.5 19.4 78 5-91 131-208 (454)
86 2o6s_A Variable lymphocyte rec 99.9 6.1E-22 2.1E-26 160.3 15.5 175 8-239 10-184 (208)
87 4ay9_X Follicle-stimulating ho 99.9 1.9E-22 6.4E-27 176.3 12.8 222 6-253 31-256 (350)
88 1jl5_A Outer protein YOPM; leu 99.9 2.5E-22 8.5E-27 181.3 13.1 218 8-257 74-291 (454)
89 2o6s_A Variable lymphocyte rec 99.9 3.3E-22 1.1E-26 161.9 12.6 164 4-221 27-190 (208)
90 3g06_A SSPH2 (leucine-rich rep 99.9 1.5E-21 5.3E-26 181.7 18.6 221 5-257 61-298 (622)
91 1h6t_A Internalin B; cell adhe 99.9 1.5E-21 5.2E-26 166.2 16.3 172 27-235 44-215 (291)
92 2xot_A Amphoterin-induced prot 99.9 2.9E-22 9.9E-27 175.9 12.1 178 9-236 22-205 (361)
93 2ast_B S-phase kinase-associat 99.9 3.7E-23 1.3E-27 179.7 6.2 222 6-253 48-282 (336)
94 3e6j_A Variable lymphocyte rec 99.9 1.8E-21 6.1E-26 159.9 15.5 157 31-238 21-177 (229)
95 3cvr_A Invasion plasmid antige 99.9 1.5E-21 5E-26 179.9 15.9 182 5-237 59-247 (571)
96 3goz_A Leucine-rich repeat-con 99.9 9.7E-23 3.3E-27 179.0 7.6 230 9-257 2-267 (362)
97 1z7x_W Ribonuclease inhibitor; 99.9 2E-23 6.8E-28 189.1 0.9 255 3-257 26-327 (461)
98 3g06_A SSPH2 (leucine-rich rep 99.9 7.6E-21 2.6E-25 177.1 17.9 206 3-237 79-301 (622)
99 1z7x_W Ribonuclease inhibitor; 99.9 1.9E-23 6.6E-28 189.2 -0.1 110 6-115 86-212 (461)
100 2v70_A SLIT-2, SLIT homolog 2 99.9 6.4E-21 2.2E-25 155.6 14.9 157 7-212 13-169 (220)
101 2xot_A Amphoterin-induced prot 99.9 1.5E-21 5.1E-26 171.3 10.9 175 31-255 20-201 (361)
102 2v9t_B SLIT homolog 2 protein 99.9 8.2E-21 2.8E-25 155.0 14.1 152 8-209 14-165 (220)
103 1m9s_A Internalin B; cell inva 99.8 2.5E-20 8.6E-25 173.3 17.6 171 4-235 42-212 (605)
104 1h6t_A Internalin B; cell adhe 99.8 1E-20 3.5E-25 161.0 13.8 193 30-260 25-217 (291)
105 4ay9_X Follicle-stimulating ho 99.8 7.8E-21 2.7E-25 166.1 12.8 214 8-248 12-231 (350)
106 4ezg_A Putative uncharacterize 99.8 9.3E-21 3.2E-25 152.0 12.2 154 26-234 41-195 (197)
107 4ezg_A Putative uncharacterize 99.8 1.2E-20 4.1E-25 151.4 12.8 153 3-210 42-195 (197)
108 1xeu_A Internalin C; cellular 99.8 4.9E-21 1.7E-25 160.6 9.5 170 5-236 19-188 (263)
109 1m9s_A Internalin B; cell inva 99.8 4.6E-21 1.6E-25 178.3 9.3 191 9-261 25-215 (605)
110 3e6j_A Variable lymphocyte rec 99.8 1.6E-19 5.5E-24 148.2 16.4 155 7-212 21-175 (229)
111 3cvr_A Invasion plasmid antige 99.8 9E-20 3.1E-24 168.0 14.0 179 30-258 60-245 (571)
112 1w8a_A SLIT protein; signaling 99.8 1.4E-19 4.8E-24 144.5 11.4 63 32-98 11-74 (192)
113 1dce_A Protein (RAB geranylger 99.8 9.4E-22 3.2E-26 181.8 -2.6 184 26-239 346-552 (567)
114 1w8a_A SLIT protein; signaling 99.8 1.6E-19 5.4E-24 144.2 10.4 88 150-237 56-143 (192)
115 1xeu_A Internalin C; cellular 99.8 7.2E-20 2.5E-24 153.5 7.6 173 27-260 17-189 (263)
116 4b8c_D Glucose-repressible alc 99.8 8.1E-20 2.8E-24 173.7 4.6 147 52-230 222-369 (727)
117 2wfh_A SLIT homolog 2 protein 99.8 8.6E-18 2.9E-22 134.1 14.1 88 150-237 56-143 (193)
118 1dce_A Protein (RAB geranylger 99.8 2E-21 6.9E-26 179.6 -8.6 188 52-260 347-550 (567)
119 2ell_A Acidic leucine-rich nuc 99.8 6.1E-18 2.1E-22 131.9 12.5 133 28-209 23-160 (168)
120 2ell_A Acidic leucine-rich nuc 99.8 4.9E-18 1.7E-22 132.5 10.6 137 53-237 23-164 (168)
121 4b8c_D Glucose-repressible alc 99.7 5.1E-19 1.8E-23 168.2 4.3 182 29-239 173-360 (727)
122 2o6r_A Variable lymphocyte rec 99.7 2.9E-17 9.8E-22 129.3 12.9 88 150-237 54-141 (177)
123 2wfh_A SLIT homolog 2 protein 99.7 2.4E-17 8.1E-22 131.6 11.8 127 32-209 13-139 (193)
124 2je0_A Acidic leucine-rich nuc 99.7 1.6E-17 5.5E-22 126.9 9.5 79 150-228 66-148 (149)
125 3sb4_A Hypothetical leucine ri 99.7 3.5E-17 1.2E-21 141.6 12.6 202 45-249 84-327 (329)
126 2je0_A Acidic leucine-rich nuc 99.7 2.8E-17 9.5E-22 125.6 10.1 129 28-205 16-149 (149)
127 2o6r_A Variable lymphocyte rec 99.7 7.7E-17 2.6E-21 126.8 12.8 133 31-213 9-141 (177)
128 1a9n_A U2A', U2A'; complex (nu 99.7 1.9E-16 6.4E-21 124.5 11.0 134 24-209 14-153 (176)
129 3ogk_B Coronatine-insensitive 99.7 3E-18 1E-22 159.8 0.2 252 3-257 241-527 (592)
130 1a9n_A U2A', U2A'; complex (nu 99.7 1.5E-16 5.3E-21 125.0 8.6 131 52-234 17-154 (176)
131 1ds9_A Outer arm dynein; leuci 99.7 2.3E-18 7.7E-23 138.2 -3.4 154 26-233 15-185 (198)
132 3ogk_B Coronatine-insensitive 99.6 5.8E-17 2E-21 151.1 4.4 252 3-257 162-502 (592)
133 1ds9_A Outer arm dynein; leuci 99.6 2.7E-18 9.3E-23 137.7 -4.8 152 4-209 17-185 (198)
134 3g39_A Variable lymphocyte rec 99.6 3.9E-15 1.3E-19 116.2 10.7 91 149-239 31-121 (170)
135 3sb4_A Hypothetical leucine ri 99.6 7.6E-15 2.6E-19 126.9 10.5 103 101-227 225-328 (329)
136 3un9_A NLR family member X1; l 99.6 1.6E-16 5.3E-21 139.5 -0.6 170 5-216 72-259 (372)
137 2r9u_A Variable lymphocyte rec 99.6 1.5E-14 5E-19 113.3 10.7 91 149-239 34-124 (174)
138 2p1m_B Transport inhibitor res 99.6 6.1E-16 2.1E-20 144.2 2.6 248 3-251 103-405 (594)
139 2p1m_B Transport inhibitor res 99.6 2.9E-16 9.7E-21 146.5 0.1 90 143-233 427-519 (594)
140 3g39_A Variable lymphocyte rec 99.6 3.2E-14 1.1E-18 111.0 11.2 59 31-93 11-69 (170)
141 4fdw_A Leucine rich hypothetic 99.5 1.9E-13 6.4E-18 121.1 17.1 214 6-253 136-355 (401)
142 2r9u_A Variable lymphocyte rec 99.5 7.5E-14 2.6E-18 109.3 11.4 58 32-93 15-72 (174)
143 4fdw_A Leucine rich hypothetic 99.5 5.1E-13 1.7E-17 118.3 14.4 203 1-236 154-361 (401)
144 3un9_A NLR family member X1; l 99.4 9.9E-15 3.4E-19 128.0 1.0 88 147-234 154-253 (372)
145 2ifg_A High affinity nerve gro 99.4 1.1E-12 3.8E-17 114.1 9.7 88 149-237 32-120 (347)
146 2ifg_A High affinity nerve gro 99.4 3E-12 1E-16 111.4 10.5 103 152-256 12-116 (347)
147 2ra8_A Uncharacterized protein 99.1 4.6E-11 1.6E-15 104.0 3.6 169 22-211 132-322 (362)
148 4fs7_A Uncharacterized protein 99.0 2.4E-09 8.1E-14 94.7 12.8 85 143-230 292-376 (394)
149 2ra8_A Uncharacterized protein 99.0 7E-10 2.4E-14 96.6 8.1 180 29-234 107-321 (362)
150 4fs7_A Uncharacterized protein 99.0 1.1E-08 3.8E-13 90.3 14.8 108 1-112 67-195 (394)
151 4gt6_A Cell surface protein; l 98.8 1.2E-07 4E-12 83.8 15.2 107 143-253 260-367 (394)
152 1io0_A Tropomodulin; LRR prote 98.7 8.3E-09 2.8E-13 81.2 4.2 40 52-91 34-78 (185)
153 1io0_A Tropomodulin; LRR prote 98.7 6.6E-09 2.3E-13 81.8 3.6 113 2-115 33-164 (185)
154 4gt6_A Cell surface protein; l 98.7 6E-07 2E-11 79.2 15.4 240 2-252 60-343 (394)
155 3rw6_A Nuclear RNA export fact 98.6 9.5E-09 3.3E-13 85.1 1.6 80 26-108 167-257 (267)
156 3rw6_A Nuclear RNA export fact 98.5 9.8E-08 3.4E-12 79.1 6.4 67 169-237 167-237 (267)
157 4h09_A Hypothetical leucine ri 98.5 5.8E-06 2E-10 72.4 16.9 84 145-230 237-320 (379)
158 4h09_A Hypothetical leucine ri 98.3 1.6E-05 5.6E-10 69.4 14.1 177 1-229 154-342 (379)
159 3e4g_A ATP synthase subunit S, 98.2 4.3E-07 1.5E-11 70.0 1.6 83 6-89 62-150 (176)
160 3e4g_A ATP synthase subunit S, 98.2 6.5E-07 2.2E-11 69.0 2.5 83 149-231 62-150 (176)
161 3rfe_A Platelet glycoprotein I 97.7 7.3E-05 2.5E-09 54.7 6.2 60 176-237 12-72 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 0.00011 3.8E-09 57.6 4.9 111 3-114 39-169 (197)
163 3rfe_A Platelet glycoprotein I 97.3 0.00046 1.6E-08 50.4 6.5 56 33-91 12-68 (130)
164 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00024 8.1E-09 55.7 4.4 84 147-230 40-136 (197)
165 2lz0_A Uncharacterized protein 80.3 3.6 0.00012 27.9 5.3 48 16-65 7-54 (100)
166 2ks1_B Epidermal growth factor 77.6 0.4 1.4E-05 27.1 -0.2 24 287-310 13-36 (44)
167 2l9u_A Receptor tyrosine-prote 75.8 0.4 1.4E-05 25.0 -0.5 22 289-310 10-31 (40)
168 2lz0_A Uncharacterized protein 68.3 6.3 0.00022 26.6 4.0 49 38-88 5-53 (100)
169 2l2t_A Receptor tyrosine-prote 66.6 1.3 4.3E-05 25.0 0.1 23 288-310 13-35 (44)
170 2k1k_A Ephrin type-A receptor 65.0 1.3 4.6E-05 24.0 0.0 11 289-299 14-24 (38)
171 2k9y_A Ephrin type-A receptor 55.1 4.2 0.00014 22.3 0.9 25 287-311 15-39 (41)
172 2llm_A Amyloid beta A4 protein 44.3 6.7 0.00023 21.7 0.0 19 293-311 25-43 (43)
173 2l34_A TYRO protein tyrosine k 35.6 9.4 0.00032 19.9 0.3 23 289-311 10-32 (33)
174 1iij_A ERBB-2 receptor protein 34.1 7.1 0.00024 20.7 -0.3 7 305-311 28-34 (35)
175 1cd1_A CD1, MCD1D.1; immunolog 33.6 8.8 0.0003 32.1 0.0 8 305-312 302-309 (315)
176 2l6w_A Beta-type platelet-deri 31.7 14 0.00049 19.9 0.0 19 292-310 15-33 (39)
177 1scf_A Stem cell factor; steel 23.4 17 0.00058 28.7 0.0 35 276-310 205-239 (273)
178 2ls4_A High affinity copper up 27.0 20 0.00067 17.5 0.0 16 285-300 3-18 (26)
179 4ev6_A Magnesium transport pro 20.3 30 0.001 29.1 0.9 20 293-312 319-338 (339)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.3e-36 Score=289.08 Aligned_cols=263 Identities=31% Similarity=0.474 Sum_probs=184.1
Q ss_pred CCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcE
Q 047128 3 SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQI 82 (312)
Q Consensus 3 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 82 (312)
++++|++|++++|.+++..|..+..+++|++|++++|++++.+|..+. .+++|+.|++++|++++.+|..++.+++|++
T Consensus 440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 518 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence 344455555555555444555555555555555555555555555544 4555555555555555555555555555666
Q ss_pred EEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeee-------------ee------------------
Q 047128 83 LDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILV-------------EK------------------ 131 (312)
Q Consensus 83 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~-------------~~------------------ 131 (312)
|++++|++++..|..+..+++|+.+++.+|.+.+.++..+....... ..
T Consensus 519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (768)
T 3rgz_A 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598 (768)
T ss_dssp EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTT
T ss_pred EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccc
Confidence 66666555555555555666666666666655544333222100000 00
Q ss_pred -----------------eeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcC
Q 047128 132 -----------------ASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGV 194 (312)
Q Consensus 132 -----------------~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 194 (312)
......+..+..+..++.|++||+++|++++.+|..+++++.|+.|+|++|+++|.+|..++.
T Consensus 599 ~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 678 (768)
T 3rgz_A 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 678 (768)
T ss_dssp CCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC
Confidence 000111222334455788999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCccccccCC-CCCCCCCCCCCCCC
Q 047128 195 MTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGN-DLCGAPIPKNCTEN 267 (312)
Q Consensus 195 l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n-~l~~~p~~~~c~~~ 267 (312)
+++|+.||+++|++++.+|..+..++.|++|++++|+++|.+|...++.++....+.|| .+||.|.. .|...
T Consensus 679 L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~ 751 (768)
T 3rgz_A 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPS 751 (768)
T ss_dssp CTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999 79999876 78644
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.7e-35 Score=253.96 Aligned_cols=256 Identities=29% Similarity=0.457 Sum_probs=218.9
Q ss_pred CCcCEEECCCCcccc--cccccccCCCCCCEEECcC-CCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128 5 TSLVWLRLGKNKLSV--DILVSLKNCTTLESLDVGE-NEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ 81 (312)
Q Consensus 5 ~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~l~~-n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 81 (312)
.+++.|++++|.+++ .+|..+.++++|++|++++ |.+.+.+|..+. .+++|++|++++|++++..|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 578899999999987 7888999999999999995 888888888887 899999999999999988898899999999
Q ss_pred EEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccc---eeeeeeeeeeecCcccchHHHhccccEEEcCCC
Q 047128 82 ILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVG---VILVEKASVVSKGEMVDYEDILNLVRMIDISRN 158 (312)
Q Consensus 82 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n 158 (312)
+|++++|.+++..|..+..+++|+.|++.+|.+.+..+..+... ...+....+...+..+..+..++ |++|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 99999999988889999999999999999999886665544432 12222222223334455566666 999999999
Q ss_pred cccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCC
Q 047128 159 NFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPS 238 (312)
Q Consensus 159 ~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~ 238 (312)
.+++..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 99999999999999999999999999866665 78899999999999999999999999999999999999999999998
Q ss_pred CCCCCCCccccccCCC-CCCCCCCCCC
Q 047128 239 STQLQSFDVSSFAGND-LCGAPIPKNC 264 (312)
Q Consensus 239 ~~~l~~l~~~~l~~n~-l~~~p~~~~c 264 (312)
...+++++.+++.+|+ +||.|.+ .|
T Consensus 287 ~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 287 GGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp STTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CccccccChHHhcCCCCccCCCCC-CC
Confidence 8889999999999995 9998876 46
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-32 Score=264.21 Aligned_cols=255 Identities=27% Similarity=0.398 Sum_probs=205.8
Q ss_pred CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128 4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL 83 (312)
Q Consensus 4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 83 (312)
+++|++|++++|.+++..|..+.++++|++|++++|++++.+|..+. .+++|+.|++++|++++.+|..+..+++|++|
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence 56788888888888777788888888888888888888877777776 78888888888888887788888888888888
Q ss_pred EccCCCCCcccchhhHhhcccccccccccccccccCCCCcc--ceeeeeeeeeeecCcccchHHHhccccEEEcCCCccc
Q 047128 84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDV--GVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS 161 (312)
Q Consensus 84 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~ 161 (312)
++++|++++..|..+..+++|+.+++.+|.+.+..+..+.. .........+...+..+..+..+++|++|++++|.++
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 88888888788888888888888888888877665544432 1222222223333455666777888999999999888
Q ss_pred ccCChhh----------------------------------------------------------------------hcC
Q 047128 162 GKIPLEV----------------------------------------------------------------------TNL 171 (312)
Q Consensus 162 ~~~p~~~----------------------------------------------------------------------~~l 171 (312)
+.+|..+ ..+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 7766543 335
Q ss_pred CCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC-CCCCCCccccc
Q 047128 172 KALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-TQLQSFDVSSF 250 (312)
Q Consensus 172 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~l 250 (312)
++|+.|++++|+++|.+|..++.+++|+.|++++|++++.+|+.++.+++|+.||+++|+++|.+|.. ..+..|+.+++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 67999999999999999999999999999999999999999999999999999999999999988866 78899999999
Q ss_pred cCCCCCCCC
Q 047128 251 AGNDLCGAP 259 (312)
Q Consensus 251 ~~n~l~~~p 259 (312)
++|+++|..
T Consensus 712 s~N~l~g~i 720 (768)
T 3rgz_A 712 SNNNLSGPI 720 (768)
T ss_dssp CSSEEEEEC
T ss_pred cCCcccccC
Confidence 999888753
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=8e-31 Score=237.39 Aligned_cols=117 Identities=16% Similarity=0.189 Sum_probs=69.6
Q ss_pred CCCCCcCEEECCCCccccc-ccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcC--CCCCC
Q 047128 2 GSLTSLVWLRLGKNKLSVD-ILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTR--LCDLP 78 (312)
Q Consensus 2 ~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~ 78 (312)
+++++|++|++++|.+.+. .+..|.++++|++|++++|++++..|..+. ++++|++|++++|++++..+.. +..++
T Consensus 51 ~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 129 (455)
T 3v47_A 51 SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN-GLANLEVLTLTQCNLDGAVLSGNFFKPLT 129 (455)
T ss_dssp SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT-TCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc-CcccCCEEeCCCCCCCccccCcccccCcc
Confidence 4556666666666665432 244566666666666666666633344443 5666666666666666433333 66666
Q ss_pred CCcEEEccCCCCCcccchh-hHhhcccccccccccccccccC
Q 047128 79 FLQILDIADTNLSGAIPNW-INNLTGMVTSCSFTRSVQQYLP 119 (312)
Q Consensus 79 ~L~~L~l~~n~l~~~~~~~-~~~l~~L~~l~l~~n~~~~~~~ 119 (312)
+|++|++++|.+++..|.. +..+++|+.+++.+|.+....+
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 6666666666666555554 6666777777777666654433
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=4.1e-30 Score=232.75 Aligned_cols=256 Identities=18% Similarity=0.152 Sum_probs=180.8
Q ss_pred CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128 5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD 84 (312)
Q Consensus 5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 84 (312)
++|++|+|++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|++++|++++..|..|..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 57999999999999888999999999999999999998777766555899999999999999988899999999999999
Q ss_pred ccCCCCCcccchh--hHhhcccccccccccccccccCCCCccc---eeeeeeeeeeec----------------------
Q 047128 85 IADTNLSGAIPNW--INNLTGMVTSCSFTRSVQQYLPLPIDVG---VILVEKASVVSK---------------------- 137 (312)
Q Consensus 85 l~~n~l~~~~~~~--~~~l~~L~~l~l~~n~~~~~~~~~~~~~---~~~~~~~~~~~~---------------------- 137 (312)
+++|.+++..+.. +..+++|+.|++.+|.+....+..+... ........+...
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998766654 8999999999999999887655432111 100000000000
Q ss_pred --------------------------------Cc----ccchHH------------------------------------
Q 047128 138 --------------------------------GE----MVDYED------------------------------------ 145 (312)
Q Consensus 138 --------------------------------~~----~~~~~~------------------------------------ 145 (312)
.. .+..+.
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 00 000000
Q ss_pred ---HhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCC
Q 047128 146 ---ILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFS 222 (312)
Q Consensus 146 ---~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L 222 (312)
..++|+.|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..|..+..+++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 01345566666666665566666667777777777777765556666667777777777777765556666667777
Q ss_pred CeEecccCcccccCCCC-CCCCCCccccccCCCCCCCCC
Q 047128 223 NHLNLSNNNLTGKIPSS-TQLQSFDVSSFAGNDLCGAPI 260 (312)
Q Consensus 223 ~~L~l~~N~l~~~~~~~-~~l~~l~~~~l~~n~l~~~p~ 260 (312)
++|++++|++++..|.. ..+++|+.+++++|.+.+.|.
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCccccCCH
Confidence 77777777776654433 556666667777766665544
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=3e-31 Score=228.69 Aligned_cols=231 Identities=22% Similarity=0.313 Sum_probs=199.3
Q ss_pred CCCCCCcCEEECCC-CcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCC
Q 047128 1 MGSLTSLVWLRLGK-NKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPF 79 (312)
Q Consensus 1 ~~~l~~L~~L~L~~-n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 79 (312)
|+++++|++|++++ |.+++..|..+.++++|++|++++|.+++.+|..+. .+++|++|++++|++++.+|..+..+++
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 150 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLPN 150 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG-GCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh-CCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence 35689999999995 999888999999999999999999999988898887 8999999999999999899999999999
Q ss_pred CcEEEccCCCCCcccchhhHhhc-ccccccccccccccccCCCCccc-eeeeeeeeeeecCcccchHHHhccccEEEcCC
Q 047128 80 LQILDIADTNLSGAIPNWINNLT-GMVTSCSFTRSVQQYLPLPIDVG-VILVEKASVVSKGEMVDYEDILNLVRMIDISR 157 (312)
Q Consensus 80 L~~L~l~~n~l~~~~~~~~~~l~-~L~~l~l~~n~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~ 157 (312)
|++|++++|.+++..|..+..++ .|+.+++.+|.+.+..+..+... ........+...+..+..+..+++|++|++++
T Consensus 151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230 (313)
T ss_dssp CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCC
Confidence 99999999999989999999998 99999999999986665554432 12222222223334566677889999999999
Q ss_pred CcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccc
Q 047128 158 NNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG 234 (312)
Q Consensus 158 n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 234 (312)
|.+++..|. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++++|+.-+
T Consensus 231 N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 231 NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp SEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred CceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 999976665 788999999999999999899999999999999999999999999986 789999999999998544
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.4e-30 Score=225.82 Aligned_cols=226 Identities=16% Similarity=0.182 Sum_probs=190.9
Q ss_pred CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128 4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL 83 (312)
Q Consensus 4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 83 (312)
.++++.|+|++|.++ .+|..+..+++|++|++++|.++ .+|..+. .+++|++|++++|+++ .+|..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~-~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGG-GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHh-ccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 478899999999998 67778888999999999999999 8998886 8999999999999999 788889999999999
Q ss_pred EccCCCCCcccchhhHh---------hcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEE
Q 047128 84 DIADTNLSGAIPNWINN---------LTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMID 154 (312)
Q Consensus 84 ~l~~n~l~~~~~~~~~~---------l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 154 (312)
++++|++.+..|..+.. +++|+.|++.+|.+.. ++..+..+++|++|+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------------lp~~l~~l~~L~~L~ 212 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-----------------------LPASIANLQNLKSLK 212 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-----------------------CCGGGGGCTTCCEEE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc-----------------------chHhhcCCCCCCEEE
Confidence 99998877788876654 8888998888887752 223345678899999
Q ss_pred cCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccc
Q 047128 155 ISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG 234 (312)
Q Consensus 155 ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 234 (312)
+++|.++ .+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+..+++|++|++++|++.+
T Consensus 213 L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 213 IRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp EESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred ccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence 9999999 466678899999999999998888889888999999999999998888899889999999999999999888
Q ss_pred cCCCC-CCCCCCccccccCCCCCC
Q 047128 235 KIPSS-TQLQSFDVSSFAGNDLCG 257 (312)
Q Consensus 235 ~~~~~-~~l~~l~~~~l~~n~l~~ 257 (312)
.+|.. ..++++..+++..+.+..
T Consensus 292 ~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 292 RLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CCCGGGGGSCTTCEEECCGGGSCC
T ss_pred hccHHHhhccCceEEeCCHHHHHH
Confidence 77765 677777777777664443
No 8
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=1e-29 Score=229.24 Aligned_cols=227 Identities=19% Similarity=0.170 Sum_probs=182.7
Q ss_pred CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128 5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD 84 (312)
Q Consensus 5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 84 (312)
++++.|+|++|.++...+..|.++++|++|++++|.+. .++...+.++++|++|++++|+++...+..|..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 56899999999999888889999999999999999999 66655555899999999999999966666799999999999
Q ss_pred ccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccC
Q 047128 85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI 164 (312)
Q Consensus 85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~ 164 (312)
+++|.++...+..|..+++|+.|++.+|.....++ ...+..+++|++|++++|+++ .+
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~---------------------~~~~~~l~~L~~L~L~~n~l~-~~ 200 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS---------------------EGAFEGLSNLRYLNLAMCNLR-EI 200 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC---------------------TTTTTTCSSCCEEECTTSCCS-SC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC---------------------cchhhcccccCeecCCCCcCc-cc
Confidence 99999997777789999999999998854332221 123345677888888888888 44
Q ss_pred ChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC-CCCC
Q 047128 165 PLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-TQLQ 243 (312)
Q Consensus 165 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~ 243 (312)
| .+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+.. ..+.
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 5 4677888888888888888777778888888888888888888777778888888888888888888766554 5677
Q ss_pred CCccccccCCCC
Q 047128 244 SFDVSSFAGNDL 255 (312)
Q Consensus 244 ~l~~~~l~~n~l 255 (312)
+|+.+++++|++
T Consensus 280 ~L~~L~L~~Np~ 291 (440)
T 3zyj_A 280 HLERIHLHHNPW 291 (440)
T ss_dssp TCCEEECCSSCE
T ss_pred CCCEEEcCCCCc
Confidence 788888888743
No 9
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=9.2e-30 Score=230.31 Aligned_cols=227 Identities=19% Similarity=0.157 Sum_probs=184.9
Q ss_pred CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128 5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD 84 (312)
Q Consensus 5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 84 (312)
+++++|+|++|.+++..+..|.++++|++|++++|.+. .++...+.++++|++|++++|+++...+..|..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 47899999999999888889999999999999999999 55544444899999999999999966666789999999999
Q ss_pred ccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccC
Q 047128 85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI 164 (312)
Q Consensus 85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~ 164 (312)
+++|.++...+..|..+++|+.|++.+|+....++ ...+..+++|++|++++|++++ +
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~---------------------~~~~~~l~~L~~L~L~~n~l~~-~ 211 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS---------------------EGAFEGLFNLKYLNLGMCNIKD-M 211 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC---------------------TTTTTTCTTCCEEECTTSCCSS-C
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC---------------------hhhccCCCCCCEEECCCCcccc-c
Confidence 99999987767789999999999998854332221 1233456778889999988884 4
Q ss_pred ChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC-CCCC
Q 047128 165 PLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-TQLQ 243 (312)
Q Consensus 165 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~ 243 (312)
| .+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..|..+++|+.|++++|++++.++.. ..++
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 4 4778888999999999888777888888888999999999888777888888888999999999888766554 5677
Q ss_pred CCccccccCCCC
Q 047128 244 SFDVSSFAGNDL 255 (312)
Q Consensus 244 ~l~~~~l~~n~l 255 (312)
+++.+++.+|++
T Consensus 291 ~L~~L~L~~Np~ 302 (452)
T 3zyi_A 291 YLVELHLHHNPW 302 (452)
T ss_dssp TCCEEECCSSCE
T ss_pred CCCEEEccCCCc
Confidence 888888888843
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=6.7e-30 Score=232.77 Aligned_cols=255 Identities=21% Similarity=0.181 Sum_probs=180.1
Q ss_pred CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128 1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL 80 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 80 (312)
|.++++|++|+|++|.+++..|..|.++++|++|++++|+++ .+|...+.++++|++|++++|++++..+..|..+++|
T Consensus 52 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 456777788888888777666777777778888888887777 6666554467777777777777776666667777777
Q ss_pred cEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCcc--ceee---------------------eeeeeee--
Q 047128 81 QILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDV--GVIL---------------------VEKASVV-- 135 (312)
Q Consensus 81 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~--~~~~---------------------~~~~~~~-- 135 (312)
++|++++|.+....+..|..+++|+.|++.+|.+....+..+.. .... +..+...
T Consensus 131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred CEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence 77777777776666666667777777777666655332110000 0000 0000000
Q ss_pred -ecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCc
Q 047128 136 -SKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPE 214 (312)
Q Consensus 136 -~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 214 (312)
..+..+.......+|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|.
T Consensus 211 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (477)
T 2id5_A 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290 (477)
T ss_dssp TTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT
T ss_pred ccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH
Confidence 0011111112233788888888888855556788999999999999999877777788899999999999999988888
Q ss_pred cccCCCCCCeEecccCcccccCCCC-CCCCCCccccccCCCCC
Q 047128 215 SMSSLTFSNHLNLSNNNLTGKIPSS-TQLQSFDVSSFAGNDLC 256 (312)
Q Consensus 215 ~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~l~~n~l~ 256 (312)
.|..+++|++|++++|++++..+.. ..+.+|+.+++.+|++.
T Consensus 291 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 291 AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred HhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 8999999999999999999766644 56788899999999653
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=230.77 Aligned_cols=238 Identities=17% Similarity=0.135 Sum_probs=195.1
Q ss_pred CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128 1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL 80 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 80 (312)
|+++++|++|+|++|.++...+..|.++++|++|++++|++.+..|..+ ..+++|++|++++|.+++..+..|..+++|
T Consensus 76 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 154 (477)
T 2id5_A 76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF-QDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154 (477)
T ss_dssp TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEEECCTTCCEECTTSSTTCTTC
T ss_pred hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHc-cccccCCEEECCCCccceeChhhccCCCCC
Confidence 5678999999999999997666778999999999999999995445555 489999999999999998888889999999
Q ss_pred cEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCcc--ce--e-------------------eeeeeee---
Q 047128 81 QILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDV--GV--I-------------------LVEKASV--- 134 (312)
Q Consensus 81 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~--~~--~-------------------~~~~~~~--- 134 (312)
++|++++|.++...+..+..+++|+.+++.+|.+....+..+.. .. . ....+..
T Consensus 155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 234 (477)
T 2id5_A 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234 (477)
T ss_dssp CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC
Confidence 99999999999777778899999999999888876543322210 00 0 1111111
Q ss_pred eecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCc
Q 047128 135 VSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPE 214 (312)
Q Consensus 135 ~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 214 (312)
.........+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+.
T Consensus 235 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 314 (477)
T 2id5_A 235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES 314 (477)
T ss_dssp CCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGG
T ss_pred cccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHh
Confidence 11222234567789999999999999988888899999999999999999988889999999999999999999976677
Q ss_pred cccCCCCCCeEecccCcccccCCCC
Q 047128 215 SMSSLTFSNHLNLSNNNLTGKIPSS 239 (312)
Q Consensus 215 ~~~~l~~L~~L~l~~N~l~~~~~~~ 239 (312)
.|..+++|++|++++|++.|.++..
T Consensus 315 ~~~~l~~L~~L~l~~N~l~c~c~~~ 339 (477)
T 2id5_A 315 VFHSVGNLETLILDSNPLACDCRLL 339 (477)
T ss_dssp GBSCGGGCCEEECCSSCEECSGGGH
T ss_pred HcCCCcccCEEEccCCCccCccchH
Confidence 8889999999999999999876543
No 12
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=8.7e-29 Score=214.90 Aligned_cols=235 Identities=20% Similarity=0.216 Sum_probs=174.0
Q ss_pred CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128 5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD 84 (312)
Q Consensus 5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 84 (312)
+++++|++++|.+++..+..|.++++|++|++++|.+++..|..+. .+++|++|++++|+++ .+|..+. ++|++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYLSKNQLK-ELPEKMP--KTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc-CCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence 5678888888888866666788888888888888888844455555 7888888888888888 5665554 6788888
Q ss_pred ccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccC
Q 047128 85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI 164 (312)
Q Consensus 85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~ 164 (312)
+++|.++...+..+..+++|+.+++.+|.+... +..+..+..+++|++|++++|.++ .+
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------~~~~~~~~~l~~L~~L~l~~n~l~-~l 186 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSS--------------------GIENGAFQGMKKLSYIRIADTNIT-TI 186 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG--------------------GBCTTGGGGCTTCCEEECCSSCCC-SC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCcc--------------------CcChhhccCCCCcCEEECCCCccc-cC
Confidence 888888877777788888888888888876531 111233455677888888888877 34
Q ss_pred ChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCC
Q 047128 165 PLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQS 244 (312)
Q Consensus 165 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~ 244 (312)
|..+. ++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|+++..+.....+++
T Consensus 187 ~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~ 264 (330)
T 1xku_A 187 PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 264 (330)
T ss_dssp CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSS
T ss_pred Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCC
Confidence 44332 7788888888888766677777788888888888888766666777788888888888888755555567777
Q ss_pred CccccccCCCCCCCCCCCCCCC
Q 047128 245 FDVSSFAGNDLCGAPIPKNCTE 266 (312)
Q Consensus 245 l~~~~l~~n~l~~~p~~~~c~~ 266 (312)
++.+++++|.+.+.+....|..
T Consensus 265 L~~L~l~~N~i~~~~~~~f~~~ 286 (330)
T 1xku_A 265 IQVVYLHNNNISAIGSNDFCPP 286 (330)
T ss_dssp CCEEECCSSCCCCCCTTSSSCS
T ss_pred cCEEECCCCcCCccChhhcCCc
Confidence 8888888887777776666643
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=5.9e-29 Score=220.84 Aligned_cols=249 Identities=15% Similarity=0.134 Sum_probs=154.8
Q ss_pred CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128 2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ 81 (312)
Q Consensus 2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 81 (312)
.++++|++|++++|.+++..+..|.++++|++|++++|.+. .++...+..+++|++|++++|+++...+..|..+++|+
T Consensus 66 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence 35778888888888888777778888888888888888888 55544434788888888888888844444467888888
Q ss_pred EEEccCCCCCcccchhhHhhcccccccccccccccccCCCCcccee---------------eeeeeeee-------ec--
Q 047128 82 ILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVI---------------LVEKASVV-------SK-- 137 (312)
Q Consensus 82 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~---------------~~~~~~~~-------~~-- 137 (312)
+|++++|.+++..+..+..+++|+.|++.+|.+.......+..... ....+... ..
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~ 224 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV 224 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCC
T ss_pred EEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccc
Confidence 8888888888777777888888888888888776431111100000 00000000 00
Q ss_pred -------------CcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECC
Q 047128 138 -------------GEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFS 204 (312)
Q Consensus 138 -------------~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 204 (312)
-.....+..+++|++|++++|.+++..|..+..+++|++|++++|+++ .+|..+..+++|++|+++
T Consensus 225 ~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 225 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp CSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECC
T ss_pred cccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECC
Confidence 000123344556666666666666555556666666666666666665 344444555666666666
Q ss_pred CccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCccccccCCCC
Q 047128 205 TNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDL 255 (312)
Q Consensus 205 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l 255 (312)
+|+++ .+|..+..+++|++|++++|+++... ...+++++.+++.+|++
T Consensus 304 ~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 304 HNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp SSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCE
T ss_pred CCcce-ecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCc
Confidence 66665 44544555666666666666665432 33455566666666644
No 14
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.5e-28 Score=213.40 Aligned_cols=226 Identities=15% Similarity=0.182 Sum_probs=195.5
Q ss_pred CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128 1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL 80 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 80 (312)
|+++++|++|++++|.+++..|..|.++++|++|++++|+++ .+|..++ ++|++|++++|++++..+..+..+++|
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L 147 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQM 147 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTC
T ss_pred hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccc
Confidence 567899999999999999888999999999999999999999 8888764 799999999999997766778999999
Q ss_pred cEEEccCCCCCc--ccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCC
Q 047128 81 QILDIADTNLSG--AIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRN 158 (312)
Q Consensus 81 ~~L~l~~n~l~~--~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n 158 (312)
++|++++|.+.. ..+..+..+++|+.+++.+|.+...... ..++|++|++++|
T Consensus 148 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-------------------------~~~~L~~L~l~~n 202 (330)
T 1xku_A 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-------------------------LPPSLTELHLDGN 202 (330)
T ss_dssp CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-------------------------CCTTCSEEECTTS
T ss_pred cEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-------------------------ccccCCEEECCCC
Confidence 999999999864 6677899999999999999987743211 0256999999999
Q ss_pred cccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCC
Q 047128 159 NFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPS 238 (312)
Q Consensus 159 ~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~ 238 (312)
.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+.
T Consensus 203 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChh
Confidence 999888899999999999999999999777778899999999999999999 8888899999999999999999976554
Q ss_pred CC-------CCCCCccccccCCCCC
Q 047128 239 ST-------QLQSFDVSSFAGNDLC 256 (312)
Q Consensus 239 ~~-------~l~~l~~~~l~~n~l~ 256 (312)
.. ....+..+++.+|++.
T Consensus 282 ~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 282 DFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp SSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred hcCCcccccccccccceEeecCccc
Confidence 31 2355667778888654
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.5e-29 Score=215.13 Aligned_cols=227 Identities=18% Similarity=0.158 Sum_probs=183.5
Q ss_pred CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCC---ChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128 5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNI---PTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ 81 (312)
Q Consensus 5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~l---p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 81 (312)
++|++|++++|.++...+..|.++++|++|++++|.++ .+ |..+. .+++|++|++++|.++ .+|..+..+++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~-~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~ 104 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDF-GTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 104 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-EEEEEEHHHH-SCSCCCEEECCSCSEE-EEEEEEETCTTCC
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccC-cccCcccccc-cccccCEEECCCCccc-cChhhcCCCCCCC
Confidence 57999999999998655566889999999999999988 43 56666 7899999999999998 5677788899999
Q ss_pred EEEccCCCCCcccc-hhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcc
Q 047128 82 ILDIADTNLSGAIP-NWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF 160 (312)
Q Consensus 82 ~L~l~~n~l~~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i 160 (312)
+|++++|.+++..+ ..+..+++|+.+++.+|.+....+. .+..+++|++|++++|.+
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG----------------------IFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT----------------------TTTTCTTCCEEECTTCEE
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh----------------------hcccCcCCCEEECCCCcc
Confidence 99999999885554 5788899999999999887654332 234467788899999888
Q ss_pred cc-cCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC
Q 047128 161 SG-KIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS 239 (312)
Q Consensus 161 ~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~ 239 (312)
++ ..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 76 57778888889999999999888766778888888999999999888666667788888999999999888876644
Q ss_pred -CCC-CCCccccccCCCCC
Q 047128 240 -TQL-QSFDVSSFAGNDLC 256 (312)
Q Consensus 240 -~~l-~~l~~~~l~~n~l~ 256 (312)
..+ .+++.+++++|++.
T Consensus 243 ~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCCCTTCCEEECTTCCEE
T ss_pred HHhhhccCCEEEccCCCee
Confidence 445 47888888888554
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=2.7e-29 Score=223.06 Aligned_cols=252 Identities=15% Similarity=0.149 Sum_probs=184.6
Q ss_pred CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128 4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL 83 (312)
Q Consensus 4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 83 (312)
+++++.|++++|.++...+..+.++++|++|++++|.++ .++...+..+++|++|++++|++++..|..+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 588999999999998666666889999999999999999 6665444489999999999999998778889999999999
Q ss_pred EccCCCCCcccchhhHhhcccccccccccccccccCCCCcc--ceeeeeeeeeeecCcccchH----------------H
Q 047128 84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDV--GVILVEKASVVSKGEMVDYE----------------D 145 (312)
Q Consensus 84 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----------------~ 145 (312)
++++|.++...+..+..+++|+.|++.+|.+....+..+.. ...................+ .
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~ 202 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence 99999999555556799999999999999988765543332 11111111111100000000 0
Q ss_pred ---------------------HhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECC
Q 047128 146 ---------------------ILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFS 204 (312)
Q Consensus 146 ---------------------~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 204 (312)
..++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 203 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (390)
T 3o6n_A 203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280 (390)
T ss_dssp CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECC
T ss_pred CCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECC
Confidence 112455555666665532 456777888888888888887777778888888888888
Q ss_pred CccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCccccccCCCCCCCC
Q 047128 205 TNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAP 259 (312)
Q Consensus 205 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~~p 259 (312)
+|+++ .+|..+..+++|++|++++|++++.++....+++|+.+++++|.+.+.+
T Consensus 281 ~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 281 NNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp SSCCC-EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred CCcCc-ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC
Confidence 88887 4566666778888888888888765555556777888888888776655
No 17
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.8e-29 Score=214.78 Aligned_cols=210 Identities=18% Similarity=0.140 Sum_probs=124.3
Q ss_pred CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCc-ccccCCcCCCCCCCCcEE
Q 047128 5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK-FHGPLPTRLCDLPFLQIL 83 (312)
Q Consensus 5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 83 (312)
++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+. .+++|++|++++|+ ++...|..+..+++|++|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT-GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcC-CccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4566666666666655555566666666666666666632233333 56666666666665 554445556666666666
Q ss_pred EccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc
Q 047128 84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK 163 (312)
Q Consensus 84 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~ 163 (312)
++++|.+++..+..+..+++|+.+++.+|.+....+ ..+..+++|++|++++|++++.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------------~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD----------------------DTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------------------TTTTTCTTCCEEECCSSCCCEE
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH----------------------hHhccCCCccEEECCCCccccc
Confidence 666666665555556666666666666665543221 1123345566666666666654
Q ss_pred CChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCC
Q 047128 164 IPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIP 237 (312)
Q Consensus 164 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~ 237 (312)
.+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+.++
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 54556666666666666666665556666666666666666666664444455666666666666666665443
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=3.8e-29 Score=234.29 Aligned_cols=256 Identities=21% Similarity=0.209 Sum_probs=171.5
Q ss_pred CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcC-CCCCCC
Q 047128 1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTR-LCDLPF 79 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~ 79 (312)
|+++++|++|++++|.++ .+|..+.++++|++|++++|++.+..|..+. .+++|++|++++|.+.+.+|.. +..+++
T Consensus 274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISAS-NFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGG-GCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred hccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhh-ccCcCCEEECCCCCcccccchhhhhccCc
Confidence 456788888899888887 6777788888888888888888843344444 7888888888888877555544 778888
Q ss_pred CcEEEccCCCCCccc--chhhHhhcccccccccccccccccCCCCcc--ceeeeeeeeeeecCc-ccchHHHhccccEEE
Q 047128 80 LQILDIADTNLSGAI--PNWINNLTGMVTSCSFTRSVQQYLPLPIDV--GVILVEKASVVSKGE-MVDYEDILNLVRMID 154 (312)
Q Consensus 80 L~~L~l~~n~l~~~~--~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~L~~L~ 154 (312)
|++|++++|.+++.. +..+..+++|+.+++.+|.+....+..+.. .............+. ....+..+++|++|+
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 888888888887555 667778888888888888776654443321 111111111111111 222345567777777
Q ss_pred cCCCcccccCChhhhcCCCCCEEEccCCCCccc---cChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCc
Q 047128 155 ISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRR---IPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNN 231 (312)
Q Consensus 155 ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~---~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~ 231 (312)
+++|.+++..|..+..+++|++|++++|++++. .+..+..+++|++|++++|++++..|..|..+++|++|++++|+
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 777777766666777777777777777777642 22446667777777777777776666677777777777777777
Q ss_pred ccccCCCC-CCCCCCccccccCCCCCCCC
Q 047128 232 LTGKIPSS-TQLQSFDVSSFAGNDLCGAP 259 (312)
Q Consensus 232 l~~~~~~~-~~l~~l~~~~l~~n~l~~~p 259 (312)
+++..|.. ..++.+ .+++++|.+.+.+
T Consensus 512 l~~~~~~~l~~l~~L-~L~L~~N~l~~~~ 539 (606)
T 3t6q_A 512 LTSSSIEALSHLKGI-YLNLASNHISIIL 539 (606)
T ss_dssp CCGGGGGGGTTCCSC-EEECCSSCCCCCC
T ss_pred cCcCChhHhCccccc-EEECcCCcccccC
Confidence 77655433 455556 6666666555443
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=6.1e-29 Score=232.37 Aligned_cols=250 Identities=14% Similarity=0.119 Sum_probs=172.6
Q ss_pred CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128 2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ 81 (312)
Q Consensus 2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 81 (312)
+++++|++|+|++|.+++..|..|.++++|++|++++|.+. .+|...+..+++|++|++++|.+++..+..|..+++|+
T Consensus 72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 35788999999999998777778899999999999999988 55555444889999999999999855555578899999
Q ss_pred EEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccce------------------eee--------------
Q 047128 82 ILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGV------------------ILV-------------- 129 (312)
Q Consensus 82 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~------------------~~~-------------- 129 (312)
+|++++|.+++..|..+..+++|+.|++.+|.+.......+.... ..+
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~ 230 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV 230 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC
T ss_pred EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc
Confidence 999999999888888888899999999988887653211111000 000
Q ss_pred ----eeeeeee-cCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECC
Q 047128 130 ----EKASVVS-KGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFS 204 (312)
Q Consensus 130 ----~~~~~~~-~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 204 (312)
..+.... .-..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.++ .+|..+..+++|+.|+++
T Consensus 231 ~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 231 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 309 (597)
T ss_dssp CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECC
T ss_pred CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECC
Confidence 0000000 0001233455667777777777777666777777777777777777776 355555666777777777
Q ss_pred CccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCccccccCCCCC
Q 047128 205 TNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLC 256 (312)
Q Consensus 205 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~ 256 (312)
+|.++ .+|..+..+++|+.|++++|++++.. ...+++|+.+++++|++.
T Consensus 310 ~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 310 HNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp SSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred CCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCC
Confidence 77777 56666666777777777777776543 345666777777777543
No 20
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.9e-28 Score=212.88 Aligned_cols=242 Identities=16% Similarity=0.157 Sum_probs=190.4
Q ss_pred CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128 5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD 84 (312)
Q Consensus 5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 84 (312)
++|++|++++|.+++..+..|.++++|++|++++|++++..|..+. .+++|++|++++|+++ .+|..+. ++|++|+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS-PLRKLQKLYISKNHLV-EIPPNLP--SSLVELR 129 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGST-TCTTCCEEECCSSCCC-SCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhh-CcCCCCEEECCCCcCC-ccCcccc--ccCCEEE
Confidence 5789999999999877788899999999999999999944455554 8999999999999998 6666655 7899999
Q ss_pred ccCCCCCcccchhhHhhccccccccccccccc--ccCCCCccceeeeeeeee---eecCcccchHHHhccccEEEcCCCc
Q 047128 85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQ--YLPLPIDVGVILVEKASV---VSKGEMVDYEDILNLVRMIDISRNN 159 (312)
Q Consensus 85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~L~~L~ls~n~ 159 (312)
+++|.++...+..+..+++|+.+++.+|.+.. ..+..+... ....+.. .... ++.. ..++|++|++++|.
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~~n~l~~-l~~~--~~~~L~~L~l~~n~ 204 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISEAKLTG-IPKD--LPETLNELHLDHNK 204 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCCSSBCSS-CCSS--SCSSCSCCBCCSSC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECcCCCCCc-cCcc--ccCCCCEEECCCCc
Confidence 99999987767778999999999999998863 222222211 1111111 1111 1111 12689999999999
Q ss_pred ccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC
Q 047128 160 FSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS 239 (312)
Q Consensus 160 i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~ 239 (312)
+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..
T Consensus 205 i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 205 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhH
Confidence 99888889999999999999999999777778999999999999999999 88888999999999999999999765543
Q ss_pred -CC------CCCCccccccCCCCC
Q 047128 240 -TQ------LQSFDVSSFAGNDLC 256 (312)
Q Consensus 240 -~~------l~~l~~~~l~~n~l~ 256 (312)
.. ...++.+++.+|++.
T Consensus 284 ~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 284 FCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp SSCSSCCSSSCCBSEEECCSSSSC
T ss_pred ccccccccccccccceEeecCccc
Confidence 11 355777888888664
No 21
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=7.2e-29 Score=215.09 Aligned_cols=205 Identities=19% Similarity=0.191 Sum_probs=187.8
Q ss_pred CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCC-----
Q 047128 2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCD----- 76 (312)
Q Consensus 2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----- 76 (312)
.++++|++|+|++|.++ .+|..+.++++|++|++++|.++ .+|..+. .+++|++|++++|++.+.+|..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~-~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG-GCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHh-cCcCCCEEECCCCCCccccChhHhhccchh
Confidence 45889999999999999 88899999999999999999999 9999887 8999999999999888888887764
Q ss_pred ----CCCCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccE
Q 047128 77 ----LPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRM 152 (312)
Q Consensus 77 ----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 152 (312)
+++|++|++++|.++ .+|..+..+++|+.|++.+|.+... +..+..+++|++
T Consensus 178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l-----------------------~~~l~~l~~L~~ 233 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-----------------------GPAIHHLPKLEE 233 (328)
T ss_dssp CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC-----------------------CGGGGGCTTCCE
T ss_pred hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC-----------------------chhhccCCCCCE
Confidence 999999999999999 8888999999999999999988742 223456788999
Q ss_pred EEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcc
Q 047128 153 IDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNL 232 (312)
Q Consensus 153 L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l 232 (312)
|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|+.+..+++|+.+++..+.+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999998876
Q ss_pred c
Q 047128 233 T 233 (312)
Q Consensus 233 ~ 233 (312)
.
T Consensus 314 ~ 314 (328)
T 4fcg_A 314 A 314 (328)
T ss_dssp C
T ss_pred H
Confidence 5
No 22
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.8e-28 Score=220.62 Aligned_cols=212 Identities=19% Similarity=0.188 Sum_probs=188.7
Q ss_pred CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128 1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL 80 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 80 (312)
|.++++|++|+|++|.+++..+..|.++++|++|++++|+++ .+|...+..+++|++|++++|+++...+..|..+++|
T Consensus 95 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 173 (452)
T 3zyi_A 95 FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173 (452)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc
Confidence 568999999999999999888899999999999999999999 7887766689999999999999997767789999999
Q ss_pred cEEEccC-CCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCc
Q 047128 81 QILDIAD-TNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNN 159 (312)
Q Consensus 81 ~~L~l~~-n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~ 159 (312)
++|++++ |.+....+..+..+++|+.|++.+|.+..... +..+++|+.|++++|.
T Consensus 174 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~------------------------~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN------------------------LTPLVGLEELEMSGNH 229 (452)
T ss_dssp CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC------------------------CTTCTTCCEEECTTSC
T ss_pred cEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc------------------------ccccccccEEECcCCc
Confidence 9999999 45654455579999999999999998875311 2346789999999999
Q ss_pred ccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCC
Q 047128 160 FSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIP 237 (312)
Q Consensus 160 i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~ 237 (312)
+++..|..|..+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.|.+.
T Consensus 230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 998889999999999999999999998888889999999999999999997777788899999999999999988664
No 23
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.9e-28 Score=219.74 Aligned_cols=212 Identities=18% Similarity=0.187 Sum_probs=188.5
Q ss_pred CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128 1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL 80 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 80 (312)
|.++++|++|+|++|.++...+..|.++++|++|++++|+++ .+|...+..+++|++|++++|+++...+..|..+++|
T Consensus 84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 162 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL 162 (440)
T ss_dssp TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCccc
Confidence 567899999999999999888899999999999999999999 7887656689999999999999997777789999999
Q ss_pred cEEEccCC-CCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCc
Q 047128 81 QILDIADT-NLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNN 159 (312)
Q Consensus 81 ~~L~l~~n-~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~ 159 (312)
++|++++| .+....+..|..+++|+.|++.+|.+..... +..+++|+.|++++|+
T Consensus 163 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~------------------------~~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN------------------------LTPLIKLDELDLSGNH 218 (440)
T ss_dssp CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC------------------------CTTCSSCCEEECTTSC
T ss_pred CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc------------------------cCCCcccCEEECCCCc
Confidence 99999995 5554455589999999999999998874321 2346789999999999
Q ss_pred ccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCC
Q 047128 160 FSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIP 237 (312)
Q Consensus 160 i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~ 237 (312)
+++..|..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++.|.+.
T Consensus 219 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 998889999999999999999999998888889999999999999999997777788899999999999999998664
No 24
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=9.3e-29 Score=212.43 Aligned_cols=214 Identities=22% Similarity=0.226 Sum_probs=187.2
Q ss_pred CCCCCCcCEEECCCCccccc--ccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCC-cCCCCC
Q 047128 1 MGSLTSLVWLRLGKNKLSVD--ILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLP-TRLCDL 77 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~i~~~--~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l 77 (312)
|+++++|++|++++|.++.. .+..+.++++|++|++++|.+. .+|..+. .+++|++|++++|++++..+ ..+..+
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l 125 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSL 125 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEE-TCTTCCEEECTTSEEESSTTTTTTTTC
T ss_pred hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcC-CCCCCCEEECCCCcccccccchhhhhc
Confidence 46789999999999999743 3667788999999999999999 7888766 89999999999999996544 578999
Q ss_pred CCCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCC
Q 047128 78 PFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISR 157 (312)
Q Consensus 78 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~ 157 (312)
++|++|++++|.+.+..+..+..+++|+.|++.+|.+... ..+..+..+++|++|++++
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN---------------------FLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG---------------------EECSCCTTCTTCCEEECTT
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc---------------------cchhHHhhCcCCCEEECCC
Confidence 9999999999999988888999999999999999987641 1122334578899999999
Q ss_pred CcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCC-CCCeEecccCcccccC
Q 047128 158 NNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLT-FSNHLNLSNNNLTGKI 236 (312)
Q Consensus 158 n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~~ 236 (312)
|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..++ +|++|++++|++++.+
T Consensus 185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 999988899999999999999999999977677788999999999999999988898888885 9999999999999865
Q ss_pred C
Q 047128 237 P 237 (312)
Q Consensus 237 ~ 237 (312)
+
T Consensus 265 ~ 265 (306)
T 2z66_A 265 E 265 (306)
T ss_dssp G
T ss_pred C
Confidence 4
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=9.3e-28 Score=224.86 Aligned_cols=254 Identities=15% Similarity=0.122 Sum_probs=132.3
Q ss_pred CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128 1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL 80 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 80 (312)
|+++++|++|++++|.+++..|..|.++++|++|++++|++++..|..+. ++++|++|++++|++++..+..+..+++|
T Consensus 53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS-GPKALKHLFFIQTGISSIDFIPLHNQKTL 131 (606)
T ss_dssp STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTS-SCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhc-ccccccEeeccccCcccCCcchhccCCcc
Confidence 34566666777777666666666666666666666666666633344433 55666666666665554334444445555
Q ss_pred cEEEccCCC------------------------CCcccchhhHhhcccc--cccccccccccccCCCCccce-e------
Q 047128 81 QILDIADTN------------------------LSGAIPNWINNLTGMV--TSCSFTRSVQQYLPLPIDVGV-I------ 127 (312)
Q Consensus 81 ~~L~l~~n~------------------------l~~~~~~~~~~l~~L~--~l~l~~n~~~~~~~~~~~~~~-~------ 127 (312)
++|++++|. +++..+..+..+++|+ .+++.+|.+....+..+.... .
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 211 (606)
T 3t6q_A 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211 (606)
T ss_dssp CEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTT
T ss_pred cEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCC
Confidence 555555554 4444444555555555 455555554443332222100 0
Q ss_pred -------------------------------------------eeeeeee---eecCcccchHHHhccccEEEcCCCccc
Q 047128 128 -------------------------------------------LVEKASV---VSKGEMVDYEDILNLVRMIDISRNNFS 161 (312)
Q Consensus 128 -------------------------------------------~~~~~~~---~~~~~~~~~~~~~~~L~~L~ls~n~i~ 161 (312)
....+.. ...+..+..+..+++|++|++++|.++
T Consensus 212 ~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 291 (606)
T 3t6q_A 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291 (606)
T ss_dssp CSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS
T ss_pred chhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC
Confidence 0000000 001111223455666777777777766
Q ss_pred ccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCc-cccCCCCCCeEecccCcccccC---C
Q 047128 162 GKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPE-SMSSLTFSNHLNLSNNNLTGKI---P 237 (312)
Q Consensus 162 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~L~~L~l~~N~l~~~~---~ 237 (312)
.+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++++.. .
T Consensus 292 -~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 370 (606)
T 3t6q_A 292 -ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370 (606)
T ss_dssp -CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT
T ss_pred -CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch
Confidence 5565666666777777777766655455555556666666666655544433 3455555555555555555432 1
Q ss_pred CCCCCCCCccccccCCCCC
Q 047128 238 SSTQLQSFDVSSFAGNDLC 256 (312)
Q Consensus 238 ~~~~l~~l~~~~l~~n~l~ 256 (312)
....+++++.+++++|.+.
T Consensus 371 ~~~~l~~L~~L~l~~n~l~ 389 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPL 389 (606)
T ss_dssp TTTTCTTCCEEECCSCSCE
T ss_pred hcccCCCCCEEECCCCcCC
Confidence 2234444555555555433
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=6.3e-29 Score=240.87 Aligned_cols=228 Identities=15% Similarity=0.109 Sum_probs=144.6
Q ss_pred CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128 5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD 84 (312)
Q Consensus 5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 84 (312)
++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..+. ++++|++|++++|++++..|..|..+++|++|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY-GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT-TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc-CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 6899999999999888888899999999999999999844454554 899999999999999877788899999999999
Q ss_pred ccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeee---------------ee---eee-cCcccchHH
Q 047128 85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEK---------------AS---VVS-KGEMVDYED 145 (312)
Q Consensus 85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~---------------~~---~~~-~~~~~~~~~ 145 (312)
+++|.+....+..+..+++|+.|++.+|.+......+. ........ +. +.. .......+.
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~-L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~ 423 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS-IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLL 423 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCS-CSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHT
T ss_pred CCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCC-cchhccCCCCcccccccccccceeecccCccccCchhhhhh
Confidence 99999987777788899999999999988765322100 00000000 00 000 001111233
Q ss_pred HhccccEEEcCCCcccccCCh-hhhcCCCCCEEEccCCCCc-----cccChhhcCCCCCcEEECCCccCCccCCccccCC
Q 047128 146 ILNLVRMIDISRNNFSGKIPL-EVTNLKALHSLNFSYNSFT-----RRIPESIGVMTSLESIDFSTNQLSGEIPESMSSL 219 (312)
Q Consensus 146 ~~~~L~~L~ls~n~i~~~~p~-~~~~l~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l 219 (312)
.+++|+.|++++|++++..+. .+..+++|+.|++++|.++ +..+..+..+++|++|++++|++++..|..|..+
T Consensus 424 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 503 (844)
T 3j0a_A 424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL 503 (844)
T ss_dssp TCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSC
T ss_pred cCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccch
Confidence 566777777777777643322 2233445555555555543 1222334444444444555444444444444444
Q ss_pred CCCCeEecccCcccc
Q 047128 220 TFSNHLNLSNNNLTG 234 (312)
Q Consensus 220 ~~L~~L~l~~N~l~~ 234 (312)
++|+.|++++|++++
T Consensus 504 ~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 504 TALRGLSLNSNRLTV 518 (844)
T ss_dssp CSCSEEEEESCCCSS
T ss_pred hhhheeECCCCCCCc
Confidence 444444444444443
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.9e-28 Score=212.98 Aligned_cols=251 Identities=18% Similarity=0.179 Sum_probs=194.0
Q ss_pred CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128 5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD 84 (312)
Q Consensus 5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 84 (312)
.+++.++++++.++ .+|..+ .++|++|++++|.+. .++...+.++++|++|++++|++++..|..|..+++|++|+
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 37999999999998 566655 368999999999999 56544344899999999999999988788999999999999
Q ss_pred ccCCCCCcccchhhHhhcccccccccccccccccCCCCcc--ceeeeeeeeeee--cCcccchHHHhccccEEEcCCCcc
Q 047128 85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDV--GVILVEKASVVS--KGEMVDYEDILNLVRMIDISRNNF 160 (312)
Q Consensus 85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~L~~L~ls~n~i 160 (312)
+++|.++ .+|..+. ++|+.+++.+|.+....+..+.. .........+.. .+..+..+..+ +|++|++++|.+
T Consensus 109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 9999998 5555443 79999999999987654332221 111111111111 11222333334 788888888888
Q ss_pred cccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCC
Q 047128 161 SGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSST 240 (312)
Q Consensus 161 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~ 240 (312)
++ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++..++...
T Consensus 185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~ 261 (332)
T 2ft3_A 185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLP 261 (332)
T ss_dssp SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGG
T ss_pred Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhh
Confidence 84 554433 789999999999997777889999999999999999997777789999999999999999996655567
Q ss_pred CCCCCccccccCCCCCCCCCCCCCCC
Q 047128 241 QLQSFDVSSFAGNDLCGAPIPKNCTE 266 (312)
Q Consensus 241 ~l~~l~~~~l~~n~l~~~p~~~~c~~ 266 (312)
.+++|+.+++++|.+.+.+....|..
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPV 287 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred cCccCCEEECCCCCCCccChhHcccc
Confidence 88999999999999988887666543
No 28
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.96 E-value=6.2e-28 Score=204.29 Aligned_cols=211 Identities=22% Similarity=0.193 Sum_probs=159.1
Q ss_pred CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEc
Q 047128 6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDI 85 (312)
Q Consensus 6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 85 (312)
+|++|++++|.+++..+..|.++++|++|++++|+++ .++...+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 4888888888888766668888888888888888888 555544447888888888888888776677888888888888
Q ss_pred cCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCC
Q 047128 86 ADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP 165 (312)
Q Consensus 86 ~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p 165 (312)
++|.+.+..+..+..+++|+.|++.+|.+... ..+..+..+++|++|++++|++++..+
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSF---------------------KLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC---------------------CCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CCCCccccCchhcccCCCCCEEECcCCcccee---------------------cCchhhccCCCCCEEECCCCCCCcCCH
Confidence 88888866666778888888888888776531 123344557778888888888887666
Q ss_pred hhhhcCCCCC----EEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC
Q 047128 166 LEVTNLKALH----SLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS 239 (312)
Q Consensus 166 ~~~~~l~~L~----~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~ 239 (312)
..+..+++|+ +|++++|.+++..+..+ ...+|++|++++|++++..+..+..+++|++|++++|+++|.++..
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred HHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 6776666666 78888888874444433 4457888888888888555556677888888888888888776644
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=6e-28 Score=222.15 Aligned_cols=114 Identities=24% Similarity=0.253 Sum_probs=75.4
Q ss_pred HHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCcc--ccChhhcCCCCCcEEECCCccCCccCCc-cccCCCC
Q 047128 145 DILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTR--RIPESIGVMTSLESIDFSTNQLSGEIPE-SMSSLTF 221 (312)
Q Consensus 145 ~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~ 221 (312)
..+++|++|++++|++++..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 345678888888888887777777788888888888888874 4456677778888888888888764554 3556666
Q ss_pred CCeEecccCcccccCCCCCCCCCCccccccCCCCCCCC
Q 047128 222 SNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAP 259 (312)
Q Consensus 222 L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~~p 259 (312)
|++|++++|++++..+... ..+++.+++++|.+...|
T Consensus 401 L~~L~Ls~N~l~~~~~~~l-~~~L~~L~Ls~N~l~~ip 437 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIKSIP 437 (520)
T ss_dssp CCEEECCSSCCCGGGGGSC-CTTCCEEECCSSCCCCCC
T ss_pred CCEEECcCCCCCcchhhhh-cccCCEEECCCCcccccc
Confidence 6666666666654333221 134555555555544433
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=1.5e-27 Score=231.19 Aligned_cols=110 Identities=20% Similarity=0.236 Sum_probs=75.4
Q ss_pred ccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEec
Q 047128 148 NLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNL 227 (312)
Q Consensus 148 ~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l 227 (312)
++|+.|++++|.+.+..+..+..+++|+.|++++|++++..|..+..+++|++|++++|.+++..|..|..+++|+.|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 56777777777777666667777777777777777777666666777777777777777777666667777777777777
Q ss_pred ccCcccccCCCC-CCCCCCccccccCCCCCC
Q 047128 228 SNNNLTGKIPSS-TQLQSFDVSSFAGNDLCG 257 (312)
Q Consensus 228 ~~N~l~~~~~~~-~~l~~l~~~~l~~n~l~~ 257 (312)
++|++++..+.. ..+++|+.+++++|.+.+
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 777776555432 445666666666665443
No 31
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=9.7e-28 Score=204.02 Aligned_cols=223 Identities=17% Similarity=0.155 Sum_probs=192.4
Q ss_pred CEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccC
Q 047128 8 VWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIAD 87 (312)
Q Consensus 8 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 87 (312)
++++.+++.++ .+|..+ .++|++|++++|.++ .++...+..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 57899999998 456544 468999999999999 66655445899999999999999988788999999999999999
Q ss_pred CC-CCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCCh
Q 047128 88 TN-LSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL 166 (312)
Q Consensus 88 n~-l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~ 166 (312)
|. +....|..+..+++|+.|++.+|.+....+ ..+..+++|++|++++|++++..+.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------------~~~~~l~~L~~L~l~~n~l~~~~~~ 147 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP----------------------GLFRGLAALQYLYLQDNALQALPDD 147 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT----------------------TTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECH----------------------hHhhCCcCCCEEECCCCcccccCHh
Confidence 97 886778899999999999999998875433 2334578899999999999977777
Q ss_pred hhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCC-CCCCCCC
Q 047128 167 EVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPS-STQLQSF 245 (312)
Q Consensus 167 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~-~~~l~~l 245 (312)
.+..+++|++|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++.++. ...++++
T Consensus 148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence 899999999999999999966666788999999999999999988899999999999999999999986654 3678889
Q ss_pred ccccccCCCCC
Q 047128 246 DVSSFAGNDLC 256 (312)
Q Consensus 246 ~~~~l~~n~l~ 256 (312)
+.+++++|++.
T Consensus 228 ~~L~l~~N~~~ 238 (285)
T 1ozn_A 228 QYLRLNDNPWV 238 (285)
T ss_dssp CEEECCSSCEE
T ss_pred CEEeccCCCcc
Confidence 99999999553
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.5e-28 Score=231.19 Aligned_cols=244 Identities=17% Similarity=0.152 Sum_probs=164.9
Q ss_pred CCCCcCEEECCCCcccccccccccCCCCCCEEECcCCC-CCC-CCChhHHhcC------CCCcEEEccCCcccccCCc--
Q 047128 3 SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENE-FVG-NIPTWIGERF------SRMVVLILRSNKFHGPLPT-- 72 (312)
Q Consensus 3 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~-l~~-~lp~~~~~~l------~~L~~L~L~~n~l~~~~~~-- 72 (312)
++++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..++ .+ ++|++|++++|+++ .+|.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~-~L~~~~~l~~L~~L~L~~n~l~-~ip~~~ 324 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ-ALADAPVGEKIQIIYIGYNNLK-TFPVET 324 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH-HHHHSGGGGTCCEEECCSSCCS-SCCCHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHH-hhhccccCCCCCEEECCCCcCC-ccCchh
Confidence 78999999999999988899999999999999999998 887 7888877 55 89999999999998 7887
Q ss_pred CCCCCCCCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccc---eeeeeeeeee--------------
Q 047128 73 RLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVG---VILVEKASVV-------------- 135 (312)
Q Consensus 73 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~---~~~~~~~~~~-------------- 135 (312)
.++.+++|++|++++|.+++.+| .+..+++|+.|++.+|.+.. ++..+... ...+....+.
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~ 402 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS 402 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEE-CCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSS
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccc-ccHhhhhhcccCcEEEccCCcCcccchhhhhcccC
Confidence 78889999999999999887777 77888888888888887762 22222211 1111100000
Q ss_pred -----------ecCcccchHH-------HhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhh-cCCC
Q 047128 136 -----------SKGEMVDYED-------ILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESI-GVMT 196 (312)
Q Consensus 136 -----------~~~~~~~~~~-------~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~ 196 (312)
..+..+..+. .+++|++|++++|.++...+..+..+++|++|++++|+++ .+|... ....
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~ 481 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN 481 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc
Confidence 1111111112 3345666666666666333334445677777777777776 444332 2222
Q ss_pred -------CCcEEECCCccCCccCCcccc--CCCCCCeEecccCcccccCCCCCCCCCCccccccC
Q 047128 197 -------SLESIDFSTNQLSGEIPESMS--SLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAG 252 (312)
Q Consensus 197 -------~L~~L~l~~N~l~~~~p~~~~--~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~ 252 (312)
+|++|++++|+++ .+|..+. .+++|++|++++|++++.+.....+++|+.+++++
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCS
T ss_pred ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCC
Confidence 6777777777777 5666665 67777777777777776444445667777777743
No 33
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=1.8e-27 Score=223.61 Aligned_cols=114 Identities=16% Similarity=0.146 Sum_probs=97.1
Q ss_pred CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128 1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL 80 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 80 (312)
|.++++|++|+|++|+|++..+.+|+++++|++|+|++|+++ .+|...+.++++|++|++++|++++..+..|+.+++|
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L 150 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 150 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCccc
Confidence 577899999999999998777888999999999999999998 7887766689999999999999997666678999999
Q ss_pred cEEEccCCCCCc-ccchhhHhhcccccccccccccc
Q 047128 81 QILDIADTNLSG-AIPNWINNLTGMVTSCSFTRSVQ 115 (312)
Q Consensus 81 ~~L~l~~n~l~~-~~~~~~~~l~~L~~l~l~~n~~~ 115 (312)
++|++++|.++. ..|..+..++.|+.|++.+|.+.
T Consensus 151 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 151 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 999999998875 35677888888888888777654
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.7e-27 Score=221.17 Aligned_cols=113 Identities=22% Similarity=0.270 Sum_probs=72.5
Q ss_pred HHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCcc--ccChhhcCCCCCcEEECCCccCCccCCc-cccCCCC
Q 047128 145 DILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTR--RIPESIGVMTSLESIDFSTNQLSGEIPE-SMSSLTF 221 (312)
Q Consensus 145 ~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~ 221 (312)
..+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 345678888888888887777778888888888888888874 2345567778888888888888764554 3555566
Q ss_pred CCeEecccCcccccCCCCCCCCCCccccccCCCCCCC
Q 047128 222 SNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGA 258 (312)
Q Consensus 222 L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~~ 258 (312)
|++|++++|++++..+..-. .+++.+++++|.+...
T Consensus 430 L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l~~i 465 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIMSI 465 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC-TTCSEEECCSSCCCCC
T ss_pred CCEEECCCCCCCcchhhhhc-CcCCEEECCCCcCccc
Confidence 66666666655543332110 3444444555544433
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=4.2e-27 Score=220.38 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=88.7
Q ss_pred CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128 1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL 80 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 80 (312)
|+++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..+. ++++|++|++++|++++..+..++.+++|
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS-GLTSLENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST-TCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcC-CcccCCEEEccCCccccccccccCCCCCC
Confidence 45778888888888888877777888888888888888888844455554 78888888888888876655677888888
Q ss_pred cEEEccCCCCCc-ccchhhHhhccccccccccccccc
Q 047128 81 QILDIADTNLSG-AIPNWINNLTGMVTSCSFTRSVQQ 116 (312)
Q Consensus 81 ~~L~l~~n~l~~-~~~~~~~~l~~L~~l~l~~n~~~~ 116 (312)
++|++++|.+++ .+|..+.++++|+.|++.+|.+..
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 888888888765 457778888888888777776654
No 36
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.6e-28 Score=215.17 Aligned_cols=228 Identities=14% Similarity=0.131 Sum_probs=133.4
Q ss_pred CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEc
Q 047128 6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDI 85 (312)
Q Consensus 6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 85 (312)
+|++|++++|.+++..+..+.++++|++|++++|++++..|..+. ++++|++|++++|++++..+..+..+++|++|++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS-SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcC-CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 566666666666654444566666666666666666622223333 5666666666666666333233556666666666
Q ss_pred cCCCCCcccc-hhhHhhcccccccccccc-cccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc
Q 047128 86 ADTNLSGAIP-NWINNLTGMVTSCSFTRS-VQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK 163 (312)
Q Consensus 86 ~~n~l~~~~~-~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~ 163 (312)
++|+++...+ ..+..+++|+.+++.+|. +.... +..+..+++|++|++++|.+++.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~----------------------~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ----------------------RKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC----------------------TTTTTTCCEEEEEEEEETTCCEE
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccC----------------------HHHccCCCCCCEEECCCCCcCcc
Confidence 6666653222 255566666666666553 32221 12233455566666666666655
Q ss_pred CChhhhcCCCCCEEEccCCCCccccChh-hcCCCCCcEEECCCccCCcc-------------------------------
Q 047128 164 IPLEVTNLKALHSLNFSYNSFTRRIPES-IGVMTSLESIDFSTNQLSGE------------------------------- 211 (312)
Q Consensus 164 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~l~~N~l~~~------------------------------- 211 (312)
.|..+..+++|++|++++|.++ .+|.. +..+++|++|++++|.+++.
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred CHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 5566666666666666666654 33332 23455666666666665532
Q ss_pred CCccccCCCCCCeEecccCcccccCCCC-CCCCCCccccccCCCCCC
Q 047128 212 IPESMSSLTFSNHLNLSNNNLTGKIPSS-TQLQSFDVSSFAGNDLCG 257 (312)
Q Consensus 212 ~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~l~~n~l~~ 257 (312)
+|+.+..+++|++|++++|+++..++.. ..+++++.+++++|++.+
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 3445667888888888888888655554 677888888888886543
No 37
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1.1e-27 Score=225.16 Aligned_cols=253 Identities=16% Similarity=0.213 Sum_probs=159.3
Q ss_pred CCCCCCcCEEECCCCc-ccc-cccccccCC------CCCCEEECcCCCCCCCCCh--hHHhcCCCCcEEEccCCcccccC
Q 047128 1 MGSLTSLVWLRLGKNK-LSV-DILVSLKNC------TTLESLDVGENEFVGNIPT--WIGERFSRMVVLILRSNKFHGPL 70 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~-i~~-~~~~~l~~l------~~L~~L~l~~n~l~~~lp~--~~~~~l~~L~~L~L~~n~l~~~~ 70 (312)
|+++++|++|++++|+ +++ .+|..+..+ ++|++|++++|+++ .+|. .+. .+++|++|++++|++++.+
T Consensus 269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ-KMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-TCTTCCEEECCSCCCEEEC
T ss_pred HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc-cCCCCCEEeCcCCcCccch
Confidence 3456666666666666 665 556555544 66666666666666 6665 444 5666666666666666555
Q ss_pred CcCCCCCCCCcEEEccCCCCCcccchhhHhhcc-cccccccccccc-------------------------cccCCCCc-
Q 047128 71 PTRLCDLPFLQILDIADTNLSGAIPNWINNLTG-MVTSCSFTRSVQ-------------------------QYLPLPID- 123 (312)
Q Consensus 71 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~l~l~~n~~~-------------------------~~~~~~~~- 123 (312)
| .+..+++|++|++++|.++ .+|..+..+++ |+.|++.+|.+. +..+..+.
T Consensus 347 p-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 424 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424 (636)
T ss_dssp C-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred h-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence 5 5555555555555555555 44444555555 555555555444 33322222
Q ss_pred ------c--ceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCCh-hhhcCC-------CCCEEEccCCCCccc
Q 047128 124 ------V--GVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL-EVTNLK-------ALHSLNFSYNSFTRR 187 (312)
Q Consensus 124 ------~--~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~-~~~~l~-------~L~~L~Ls~n~l~~~ 187 (312)
. ....+....+.........+..+++|++|++++|+++ .+|. .+.... +|++|++++|+++ .
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 502 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-K 502 (636)
T ss_dssp TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-B
T ss_pred cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-c
Confidence 0 0111111111122222334556788999999999998 4544 333332 8999999999988 7
Q ss_pred cChhhc--CCCCCcEEECCCccCCccCCccccCCCCCCeEec------ccCcccccCCCC-CCCCCCccccccCCCCCCC
Q 047128 188 IPESIG--VMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNL------SNNNLTGKIPSS-TQLQSFDVSSFAGNDLCGA 258 (312)
Q Consensus 188 ~p~~~~--~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l------~~N~l~~~~~~~-~~l~~l~~~~l~~n~l~~~ 258 (312)
+|..+. .+++|++|++++|++++ +|..+..+++|++|++ ++|++.+.+|.. ..+++|+.+++++|.+...
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i 581 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV 581 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC
T ss_pred cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCcc
Confidence 777776 88899999999999985 8888888899999988 456677766644 6788888888888888555
Q ss_pred CC
Q 047128 259 PI 260 (312)
Q Consensus 259 p~ 260 (312)
|.
T Consensus 582 p~ 583 (636)
T 4eco_A 582 NE 583 (636)
T ss_dssp CS
T ss_pred CH
Confidence 54
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=2.3e-27 Score=225.02 Aligned_cols=110 Identities=18% Similarity=0.152 Sum_probs=54.3
Q ss_pred CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEc
Q 047128 6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDI 85 (312)
Q Consensus 6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 85 (312)
++++|++++|.+++..+..|.++++|++|++++|.+++..|..+. ++++|++|++++|+++...+..|+.+++|++|++
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ-KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHH-HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHh-cccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 455555555555544444455555555555555555522233332 4555555555555555332233555555555555
Q ss_pred cCCCCCcccchhhHhhccccccccccccccc
Q 047128 86 ADTNLSGAIPNWINNLTGMVTSCSFTRSVQQ 116 (312)
Q Consensus 86 ~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~ 116 (312)
++|.+++..|..+..+++|+.|++.+|.+..
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 135 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccc
Confidence 5555544444445555555555555554443
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=4e-27 Score=217.99 Aligned_cols=119 Identities=18% Similarity=0.159 Sum_probs=94.6
Q ss_pred CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccc-cCCcCCCCCCC
Q 047128 1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHG-PLPTRLCDLPF 79 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~ 79 (312)
|+++++|++|++++|++++..|..|.++++|++|++++|+++ .++...+.++++|++|++++|++++ ..|..+..+++
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 467888999999999998777788889999999999999998 5565534488999999999999885 34667888899
Q ss_pred CcEEEccCCCCCcccc-hhhHhhcccccccccccccccccCC
Q 047128 80 LQILDIADTNLSGAIP-NWINNLTGMVTSCSFTRSVQQYLPL 120 (312)
Q Consensus 80 L~~L~l~~n~l~~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~ 120 (312)
|++|++++|...+..| ..+..+++|+.|++.+|.+....+.
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 9999999887433444 5788888889888888887765443
No 40
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=1.4e-26 Score=195.35 Aligned_cols=207 Identities=18% Similarity=0.205 Sum_probs=171.1
Q ss_pred CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEc
Q 047128 6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDI 85 (312)
Q Consensus 6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 85 (312)
..++++++++.++ .+|..+. +++++|++++|.+. .++...+..+++|++|++++|+++...+..|..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 4788999999998 4665553 67999999999999 677654458999999999999999655556788999999999
Q ss_pred cCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCC
Q 047128 86 ADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP 165 (312)
Q Consensus 86 ~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p 165 (312)
++|.++...+..+..+++|+.|++.+|.+....+ ..+..+++|++|++++|.+++..+
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------------~~~~~l~~L~~L~Ls~n~l~~~~~ 150 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP----------------------RVFDSLTKLTYLSLGYNELQSLPK 150 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT----------------------TTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCH----------------------HHhCcCcCCCEEECCCCcCCccCH
Confidence 9999997777788889999999999888765432 223457789999999999997666
Q ss_pred hhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCC
Q 047128 166 LEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPS 238 (312)
Q Consensus 166 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~ 238 (312)
..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+.++.
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 6788999999999999999866666788899999999999999966666788899999999999999887654
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=209.59 Aligned_cols=234 Identities=19% Similarity=0.196 Sum_probs=181.9
Q ss_pred CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCc--CCCCCC
Q 047128 1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPT--RLCDLP 78 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~ 78 (312)
|.++++|++|++++|.+++..+..|.++++|++|++++|+++ .+|...+..+++|++|++++|+++. +|. .+..++
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~ 149 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLT 149 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCT
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCC
Confidence 567899999999999999888889999999999999999999 8888766689999999999999994 554 789999
Q ss_pred CCcEEEccCC-CCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeee---ecCcccchHHHhccccEEE
Q 047128 79 FLQILDIADT-NLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVV---SKGEMVDYEDILNLVRMID 154 (312)
Q Consensus 79 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~L~~L~ 154 (312)
+|++|++++| .+....+..+..+++|+.+++.+|.+....+..+.... ....+... ........+..+++|+.|+
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 228 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ-NVSHLILHMKQHILLLEIFVDVTSSVECLE 228 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS-EEEEEEEECSCSTTHHHHHHHHTTTEEEEE
T ss_pred CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccc-cCCeecCCCCccccchhhhhhhcccccEEE
Confidence 9999999999 57766678899999999999999998876554443211 11111111 1111222344567788888
Q ss_pred cCCCcccccCChhhh---cCCCCCEEEccCCCCcc----ccChhhcCCCCCcEEECCCccCCccCCcc-ccCCCCCCeEe
Q 047128 155 ISRNNFSGKIPLEVT---NLKALHSLNFSYNSFTR----RIPESIGVMTSLESIDFSTNQLSGEIPES-MSSLTFSNHLN 226 (312)
Q Consensus 155 ls~n~i~~~~p~~~~---~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~l~~L~~L~ 226 (312)
+++|.+++..+..+. ....++.++++++.+++ .+|..+..+++|++|++++|+++ .+|.. |..+++|++|+
T Consensus 229 L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~ 307 (353)
T 2z80_A 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIW 307 (353)
T ss_dssp EESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEE
Confidence 888888765444332 35667777777777764 36777889999999999999999 56655 58999999999
Q ss_pred cccCcccccCCC
Q 047128 227 LSNNNLTGKIPS 238 (312)
Q Consensus 227 l~~N~l~~~~~~ 238 (312)
+++|+++|.+|.
T Consensus 308 L~~N~~~~~~~~ 319 (353)
T 2z80_A 308 LHTNPWDCSCPR 319 (353)
T ss_dssp CCSSCBCCCHHH
T ss_pred eeCCCccCcCCC
Confidence 999999987763
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=3e-27 Score=220.93 Aligned_cols=253 Identities=15% Similarity=0.152 Sum_probs=191.4
Q ss_pred CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128 4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL 83 (312)
Q Consensus 4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 83 (312)
+++++.+++++|.++...+..+.++++|++|++++|.+. .++...+..+++|+.|++++|.+++..|..|+.+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 578899999999998766677899999999999999999 5554333489999999999999998888889999999999
Q ss_pred EccCCCCCcccchhhHhhcccccccccccccccccCCCCcc--ceeeeeeeeeeecCcccchH-----------------
Q 047128 84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDV--GVILVEKASVVSKGEMVDYE----------------- 144 (312)
Q Consensus 84 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----------------- 144 (312)
++++|.++...+..|..+++|+.|++.+|.+....+..+.. ....+....+...+.....+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~ 208 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 208 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence 99999999666667899999999999999998766544432 11111111110000000000
Q ss_pred --------------------HHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECC
Q 047128 145 --------------------DILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFS 204 (312)
Q Consensus 145 --------------------~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 204 (312)
...++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..+..+++|+.|+++
T Consensus 209 ~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 209 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286 (597)
T ss_dssp CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred CCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence 011346666666666664 3567788889999999999887778888888999999999
Q ss_pred CccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCccccccCCCCCCCCC
Q 047128 205 TNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPI 260 (312)
Q Consensus 205 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~~p~ 260 (312)
+|.+++ +|..+..+++|+.|++++|++++.++....+++|+.+++++|.+.+.|.
T Consensus 287 ~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~ 341 (597)
T 3oja_B 287 NNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL 341 (597)
T ss_dssp TSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCC
T ss_pred CCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcCh
Confidence 999884 5666777888999999999888655555667888888888887776653
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=2.1e-26 Score=218.53 Aligned_cols=255 Identities=15% Similarity=0.081 Sum_probs=179.0
Q ss_pred CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCC-CCChhHHhc--CCCCcEEEccCCcccccCCcCCCCCC
Q 047128 2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVG-NIPTWIGER--FSRMVVLILRSNKFHGPLPTRLCDLP 78 (312)
Q Consensus 2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~-~lp~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~ 78 (312)
..+++|++|++++|.+++..+..|.++++|++|++++|.+.. .++...+.. .++|+.|++++|++++..|..+..++
T Consensus 326 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 405 (680)
T 1ziw_A 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405 (680)
T ss_dssp TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred ccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC
Confidence 456778888888888877777778888888888888876432 333333222 25788888888888877788888899
Q ss_pred CCcEEEccCCCCCcccc-hhhHhhcccccccccccccccccCCCCccc--eeeeeeee--eeecCcccchHHHhccccEE
Q 047128 79 FLQILDIADTNLSGAIP-NWINNLTGMVTSCSFTRSVQQYLPLPIDVG--VILVEKAS--VVSKGEMVDYEDILNLVRMI 153 (312)
Q Consensus 79 ~L~~L~l~~n~l~~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~L~~L 153 (312)
+|++|++++|.+.+.+| ..+..+++|+.+++.+|.+....+..+... ........ ....+..+..+..+++|+.|
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence 99999999998876555 678888899999998888776544333211 11111111 11113345566677888888
Q ss_pred EcCCCcccccCChhhhcCCCCCEEEccCCCCccccC--------hhhcCCCCCcEEECCCccCCccCCccccCCCCCCeE
Q 047128 154 DISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIP--------ESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHL 225 (312)
Q Consensus 154 ~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p--------~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L 225 (312)
++++|++++..+..+..+++|++|++++|++++..+ ..+..+++|++|++++|+++...+..|..+++|++|
T Consensus 486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 565 (680)
T 1ziw_A 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCccee
Confidence 888888887777778888888888888888874321 225677888888888888884334467788888888
Q ss_pred ecccCcccccCCCC-CCCCCCccccccCCCCC
Q 047128 226 NLSNNNLTGKIPSS-TQLQSFDVSSFAGNDLC 256 (312)
Q Consensus 226 ~l~~N~l~~~~~~~-~~l~~l~~~~l~~n~l~ 256 (312)
++++|++++.++.. ..+.+|+.+++++|.+.
T Consensus 566 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred ECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 88888888766554 56677777777776443
No 44
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=4e-27 Score=226.28 Aligned_cols=209 Identities=19% Similarity=0.246 Sum_probs=137.5
Q ss_pred CCcCEEECCCCcccccccccccCCCCCCEEEC-cCCCCCCC---------------------------------------
Q 047128 5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDV-GENEFVGN--------------------------------------- 44 (312)
Q Consensus 5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l-~~n~l~~~--------------------------------------- 44 (312)
.+++.|+|+++.+++.+|..++++++|++|+| ++|.+.|.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46888999999999999999999999999999 77644322
Q ss_pred -------------------------------------CChhHHhcCCCCcEEEccCCcccc-----------------cC
Q 047128 45 -------------------------------------IPTWIGERFSRMVVLILRSNKFHG-----------------PL 70 (312)
Q Consensus 45 -------------------------------------lp~~~~~~l~~L~~L~L~~n~l~~-----------------~~ 70 (312)
+|..+. ++++|+.|++++|++++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHh-cCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 777776 89999999999999997 38
Q ss_pred CcCCC--CCCCCcEEEccCCCCCcccchhhHhhcccccccccccc-ccc-ccCCCCccceeeeeeeeeeecCcccchHHH
Q 047128 71 PTRLC--DLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRS-VQQ-YLPLPIDVGVILVEKASVVSKGEMVDYEDI 146 (312)
Q Consensus 71 ~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (312)
|..++ .+++|++|++++|.+.+.+|..+..+++|+.|++.+|. +.+ .++..+.... ..+..
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~---------------~~~~~ 546 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA---------------DDEDT 546 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH---------------HCTTT
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhh---------------hcccc
Confidence 88887 99999999999999988999999999999999999997 654 3322111000 00011
Q ss_pred hccccEEEcCCCcccccCCh--hhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCC-CC
Q 047128 147 LNLVRMIDISRNNFSGKIPL--EVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTF-SN 223 (312)
Q Consensus 147 ~~~L~~L~ls~n~i~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~-L~ 223 (312)
+++|+.|++++|.++ .+|. .+.++++|++|++++|+++ .+| .++.+++|+.|++++|+++ .+|..+..+++ |+
T Consensus 547 l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~ 622 (876)
T 4ecn_A 547 GPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE 622 (876)
T ss_dssp TTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCC
T ss_pred cCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCC
Confidence 124444444444444 3444 4444444444444444444 444 3444444444444444444 44444444444 44
Q ss_pred eEecccCccc
Q 047128 224 HLNLSNNNLT 233 (312)
Q Consensus 224 ~L~l~~N~l~ 233 (312)
+|++++|+++
T Consensus 623 ~L~Ls~N~L~ 632 (876)
T 4ecn_A 623 GLGFSHNKLK 632 (876)
T ss_dssp EEECCSSCCC
T ss_pred EEECcCCCCC
Confidence 4444444444
No 45
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.6e-27 Score=203.99 Aligned_cols=201 Identities=18% Similarity=0.243 Sum_probs=106.7
Q ss_pred CCCcCEEECCCCcccccccccc--cCCCCCCEEECcCCCCCCCCChhHHhcC-----CCCcEEEccCCcccccCCcCCCC
Q 047128 4 LTSLVWLRLGKNKLSVDILVSL--KNCTTLESLDVGENEFVGNIPTWIGERF-----SRMVVLILRSNKFHGPLPTRLCD 76 (312)
Q Consensus 4 l~~L~~L~L~~n~i~~~~~~~l--~~l~~L~~L~l~~n~l~~~lp~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~ 76 (312)
+++|++|++++|.+++..|..+ .++++|++|++++|+++ .+|..+. .+ ++|++|++++|++++..|..++.
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA-TRDAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS-SSSSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc-chhHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 5556666666666655555544 55666666666666665 3354443 34 56666666666666544455666
Q ss_pred CCCCcEEEccCCCCCccc--chhh--HhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccE
Q 047128 77 LPFLQILDIADTNLSGAI--PNWI--NNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRM 152 (312)
Q Consensus 77 l~~L~~L~l~~n~l~~~~--~~~~--~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 152 (312)
+++|++|++++|++.+.. +..+ ..++ +|++
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~----------------------------------------------~L~~ 205 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFP----------------------------------------------TLQV 205 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCT----------------------------------------------TCCE
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCC----------------------------------------------CCCE
Confidence 666666666666554321 2222 3344 4555
Q ss_pred EEcCCCccccc---CChhhhcCCCCCEEEccCCCCccccC-hhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecc
Q 047128 153 IDISRNNFSGK---IPLEVTNLKALHSLNFSYNSFTRRIP-ESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLS 228 (312)
Q Consensus 153 L~ls~n~i~~~---~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 228 (312)
|++++|++++. ....+..+++|++|++++|++++..| ..+..+++|++|++++|+++ .+|..+. ++|++|+++
T Consensus 206 L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls 282 (312)
T 1wwl_A 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLS 282 (312)
T ss_dssp EECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECC
T ss_pred EECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECC
Confidence 66666555521 11223345566666666666554433 22334555666666666665 4554443 555566666
Q ss_pred cCcccccCCCCCCCCCCccccccCCCCC
Q 047128 229 NNNLTGKIPSSTQLQSFDVSSFAGNDLC 256 (312)
Q Consensus 229 ~N~l~~~~~~~~~l~~l~~~~l~~n~l~ 256 (312)
+|++++. |....+++++.+++++|++.
T Consensus 283 ~N~l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 283 YNRLDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp SSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred CCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence 6666554 33445555555555555554
No 46
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=4.5e-26 Score=192.22 Aligned_cols=200 Identities=22% Similarity=0.235 Sum_probs=173.2
Q ss_pred CCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccccccc
Q 047128 30 TLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCS 109 (312)
Q Consensus 30 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l 109 (312)
..+.++++++.++ .+|..+. ++++.|++++|+++...+..|..+++|++|++++|.++...+..|..+++|+.|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 5789999999999 8998653 68999999999999766678999999999999999999666667889999999999
Q ss_pred cccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccC
Q 047128 110 FTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIP 189 (312)
Q Consensus 110 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 189 (312)
.+|.+....+ ..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+
T Consensus 93 ~~n~l~~~~~----------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 150 (270)
T 2o6q_A 93 TDNKLQALPI----------------------GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150 (270)
T ss_dssp CSSCCCCCCT----------------------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCcCCcCCH----------------------hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH
Confidence 9998865332 233457789999999999998888889999999999999999996666
Q ss_pred hhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC-CCCCCCccccccCCCC
Q 047128 190 ESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-TQLQSFDVSSFAGNDL 255 (312)
Q Consensus 190 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~l~~n~l 255 (312)
..+..+++|++|++++|++++..+..|..+++|++|++++|++++.++.. ..+++++.+++.+|++
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 66889999999999999999766677889999999999999999876653 6688899999999854
No 47
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.95 E-value=1.8e-26 Score=196.51 Aligned_cols=205 Identities=16% Similarity=0.147 Sum_probs=171.0
Q ss_pred CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128 2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ 81 (312)
Q Consensus 2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 81 (312)
++++++++++++++.++ .+|..+. +++++|++++|.++ .++...+..+++|+.|++++|.+++. +. ...+++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~ 80 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLG 80 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCC
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCC
Confidence 46889999999999998 4565553 68999999999999 55544444899999999999999954 33 37899999
Q ss_pred EEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccc
Q 047128 82 ILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS 161 (312)
Q Consensus 82 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~ 161 (312)
+|++++|.++ .+|..+..+++|+.|++.+|.+....+ ..+..+++|++|++++|+++
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~----------------------~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL----------------------GALRGLGELQELYLKGNELK 137 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCS----------------------STTTTCTTCCEEECTTSCCC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCH----------------------HHHcCCCCCCEEECCCCCCC
Confidence 9999999998 778888899999999999998875432 23345778999999999999
Q ss_pred ccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccC
Q 047128 162 GKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKI 236 (312)
Q Consensus 162 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 236 (312)
+..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|+++ .+|..+...+.|+.+++++|++.|.+
T Consensus 138 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 777777889999999999999998555566788999999999999999 77887888889999999999998765
No 48
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=5.3e-27 Score=219.72 Aligned_cols=229 Identities=14% Similarity=0.048 Sum_probs=147.7
Q ss_pred CCCCCcCEEECCCCcccccccc--------------------cccCCCCCCEEECcCCCCCCC--CChhHHhcCCCCcEE
Q 047128 2 GSLTSLVWLRLGKNKLSVDILV--------------------SLKNCTTLESLDVGENEFVGN--IPTWIGERFSRMVVL 59 (312)
Q Consensus 2 ~~l~~L~~L~L~~n~i~~~~~~--------------------~l~~l~~L~~L~l~~n~l~~~--lp~~~~~~l~~L~~L 59 (312)
..+++|++|++++|.++ .+|. .+..+++|++|++++|.+++. +|..+. .+++|++|
T Consensus 304 ~~~~~L~~L~l~~n~l~-~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~-~~~~L~~L 381 (606)
T 3vq2_A 304 PKHFKWQSLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL-GTNSLRHL 381 (606)
T ss_dssp CTTCCCSEEEEESCCCS-SCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHH-CCSCCCEE
T ss_pred cccccCCEEEcccccCc-ccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhc-cCCcccEe
Confidence 34556666666666663 4442 233444444444444444421 133333 45555555
Q ss_pred EccCCcccccCCcCCCCCCCCcEEEccCCCCCcccc-hhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecC
Q 047128 60 ILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIP-NWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKG 138 (312)
Q Consensus 60 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (312)
++++|.++ .+|..+..+++|++|++++|.+.+..| ..+..+++|+.+++.+|.+...
T Consensus 382 ~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------- 439 (606)
T 3vq2_A 382 DLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID--------------------- 439 (606)
T ss_dssp ECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC---------------------
T ss_pred ECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc---------------------
Confidence 55555554 233445555555555555555544444 3445555555555555554432
Q ss_pred cccchHHHhccccEEEcCCCcccc-cCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCcccc
Q 047128 139 EMVDYEDILNLVRMIDISRNNFSG-KIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMS 217 (312)
Q Consensus 139 ~~~~~~~~~~~L~~L~ls~n~i~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 217 (312)
.+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+.
T Consensus 440 -~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 518 (606)
T 3vq2_A 440 -FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518 (606)
T ss_dssp -CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT
T ss_pred -chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHcc
Confidence 23334557788889999988886 3677888888999999999988877788888888899999999988877788888
Q ss_pred CCCCCCeEecccCcccccCCCCCCCC-CCccccccCCCC
Q 047128 218 SLTFSNHLNLSNNNLTGKIPSSTQLQ-SFDVSSFAGNDL 255 (312)
Q Consensus 218 ~l~~L~~L~l~~N~l~~~~~~~~~l~-~l~~~~l~~n~l 255 (312)
.+++|++|++++|+++..++....+. +++.+++.+|++
T Consensus 519 ~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 519 QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp TCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred CCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCc
Confidence 88889999999998886555555554 578888888854
No 49
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=4.6e-27 Score=216.24 Aligned_cols=89 Identities=24% Similarity=0.313 Sum_probs=72.5
Q ss_pred hcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCc--cCCccccCCCCCCeEecccCcccccCCC--CCCCCC
Q 047128 169 TNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSG--EIPESMSSLTFSNHLNLSNNNLTGKIPS--STQLQS 244 (312)
Q Consensus 169 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~~~--~~~l~~ 244 (312)
..+++|++|++++|++++..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|. ...+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 567888999999999887788888888999999999999985 4566788889999999999999874442 356788
Q ss_pred CccccccCCCCCC
Q 047128 245 FDVSSFAGNDLCG 257 (312)
Q Consensus 245 l~~~~l~~n~l~~ 257 (312)
++.+++++|.+.+
T Consensus 401 L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 401 LLSLNMSSNILTD 413 (520)
T ss_dssp CCEEECCSSCCCG
T ss_pred CCEEECcCCCCCc
Confidence 8888999987754
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=1.2e-26 Score=215.57 Aligned_cols=250 Identities=16% Similarity=0.134 Sum_probs=174.2
Q ss_pred CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128 5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD 84 (312)
Q Consensus 5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 84 (312)
++|++|++++|.+++..+..|.++++|++|++++|++++..|..+. ++++|++|++++|+++ .+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL-FNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT-TCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhC-CCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 5688888888888876677888888888888888888833344444 7888888888888887 56655 678888888
Q ss_pred ccCCCCCcc-cchhhHhhcccccccccccccccccCCCCccc---------------------ee---------------
Q 047128 85 IADTNLSGA-IPNWINNLTGMVTSCSFTRSVQQYLPLPIDVG---------------------VI--------------- 127 (312)
Q Consensus 85 l~~n~l~~~-~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~---------------------~~--------------- 127 (312)
+++|.+++. .|..+..+++|+.|++.+|.+....-...... ..
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 207 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSS
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCcc
Confidence 888888753 35778888888888888777653110000000 00
Q ss_pred --------------eeeeeeeeecC--------------------------------cccch--HHHhccccEEEcCCCc
Q 047128 128 --------------LVEKASVVSKG--------------------------------EMVDY--EDILNLVRMIDISRNN 159 (312)
Q Consensus 128 --------------~~~~~~~~~~~--------------------------------~~~~~--~~~~~~L~~L~ls~n~ 159 (312)
....+...... ..... ....++|++|++++|.
T Consensus 208 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 287 (562)
T 3a79_B 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287 (562)
T ss_dssp CCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEE
T ss_pred chhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccE
Confidence 00000000000 00000 0011267777887777
Q ss_pred ccccCChhh-----------------------------------------------------hcCCCCCEEEccCCCCcc
Q 047128 160 FSGKIPLEV-----------------------------------------------------TNLKALHSLNFSYNSFTR 186 (312)
Q Consensus 160 i~~~~p~~~-----------------------------------------------------~~l~~L~~L~Ls~n~l~~ 186 (312)
+++.+|..+ ..+++|++|++++|++++
T Consensus 288 l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~ 367 (562)
T 3a79_B 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD 367 (562)
T ss_dssp ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT
T ss_pred eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcccc
Confidence 776665543 567899999999999998
Q ss_pred ccChhhcCCCCCcEEECCCccCCc--cCCccccCCCCCCeEecccCcccccCCC--CCCCCCCccccccCCCCCCC
Q 047128 187 RIPESIGVMTSLESIDFSTNQLSG--EIPESMSSLTFSNHLNLSNNNLTGKIPS--STQLQSFDVSSFAGNDLCGA 258 (312)
Q Consensus 187 ~~p~~~~~l~~L~~L~l~~N~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~~~--~~~l~~l~~~~l~~n~l~~~ 258 (312)
..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|. ...+.+++.+++++|.+.+.
T Consensus 368 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 443 (562)
T 3a79_B 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443 (562)
T ss_dssp TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGG
T ss_pred chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcc
Confidence 788889999999999999999995 2356788999999999999999984543 36778899999999988653
No 51
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.94 E-value=1.8e-26 Score=192.53 Aligned_cols=214 Identities=17% Similarity=0.177 Sum_probs=157.7
Q ss_pred CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEc
Q 047128 6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDI 85 (312)
Q Consensus 6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 85 (312)
..++++++++.++ .+|..+. +++++|++++|.+. .++...+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4567888888877 4555443 57788888888887 444433337888888888888888766666788888888888
Q ss_pred cCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCC
Q 047128 86 ADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP 165 (312)
Q Consensus 86 ~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p 165 (312)
++|.++...+..+..+ ++|++|++++|++++..+
T Consensus 91 ~~n~l~~~~~~~~~~l----------------------------------------------~~L~~L~L~~N~l~~~~~ 124 (251)
T 3m19_A 91 ANNQLASLPLGVFDHL----------------------------------------------TQLDKLYLGGNQLKSLPS 124 (251)
T ss_dssp TTSCCCCCCTTTTTTC----------------------------------------------TTCCEEECCSSCCCCCCT
T ss_pred CCCcccccChhHhccc----------------------------------------------CCCCEEEcCCCcCCCcCh
Confidence 8888775544444433 448889999999997777
Q ss_pred hhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCC---
Q 047128 166 LEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQL--- 242 (312)
Q Consensus 166 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l--- 242 (312)
..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.......+
T Consensus 125 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~ 204 (251)
T 3m19_A 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQW 204 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHH
T ss_pred hHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHH
Confidence 77899999999999999999666667899999999999999999777778999999999999999999874333111
Q ss_pred ---CCCccccccCCCCCCCCCCCCCCCCCC
Q 047128 243 ---QSFDVSSFAGNDLCGAPIPKNCTENVS 269 (312)
Q Consensus 243 ---~~l~~~~l~~n~l~~~p~~~~c~~~~~ 269 (312)
......+..++.+++.|....|..+..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 234 (251)
T 3m19_A 205 IRENSNKVKDGTGQNLHESPDGVTCSDGKV 234 (251)
T ss_dssp HHHSGGGBCC-------CCGGGCBBTTSCB
T ss_pred HHhcccceeeccCcccccCCCcCccCCCcE
Confidence 112233455677888888888887643
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=6.5e-27 Score=201.94 Aligned_cols=218 Identities=22% Similarity=0.192 Sum_probs=153.7
Q ss_pred CCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcE
Q 047128 3 SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQI 82 (312)
Q Consensus 3 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 82 (312)
.+++|++|++++|.+++..|..|.++++|++|++++|.+++ ++. + ..+++|++|++++|++++. + ..++|++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~-~-~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~ 103 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD-L-ESLSTLRTLDLNNNYVQEL-L----VGPSIET 103 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE-E-TTCTTCCEEECCSSEEEEE-E----ECTTCCE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh-h-hhcCCCCEEECcCCccccc-c----CCCCcCE
Confidence 45688888998888887777788888888999998888874 333 3 3788888888888888743 2 2377888
Q ss_pred EEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccc
Q 047128 83 LDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG 162 (312)
Q Consensus 83 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~ 162 (312)
|++++|.+++..+.. +++|+.+++.+|.+....+. .+..+++|++|++++|.+++
T Consensus 104 L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~----------------------~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 104 LHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDL----------------------DEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp EECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGB----------------------CTGGGSSEEEEECTTSCCCE
T ss_pred EECCCCccCCcCccc---cCCCCEEECCCCCCCCccch----------------------hhhccCCCCEEECCCCCCCc
Confidence 888888887554433 56778888888877654332 23346667777777777776
Q ss_pred cCChhh-hcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCC
Q 047128 163 KIPLEV-TNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQ 241 (312)
Q Consensus 163 ~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 241 (312)
..+..+ ..+++|++|++++|.+++ ++.. ..+++|++|++++|++++ +|..+..+++|++|++++|+++..++....
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~-~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 235 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYD-VKGQ-VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRF 235 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCE-EECC-CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCC
T ss_pred ccHHHHhhccCcCCEEECCCCcCcc-cccc-cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhc
Confidence 655555 366777777777777763 3332 246777777777777773 444467777777777777777765555566
Q ss_pred CCCCccccccCCCCC
Q 047128 242 LQSFDVSSFAGNDLC 256 (312)
Q Consensus 242 l~~l~~~~l~~n~l~ 256 (312)
+++++.+++++|.+.
T Consensus 236 l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 236 SQNLEHFDLRGNGFH 250 (317)
T ss_dssp CTTCCEEECTTCCCB
T ss_pred CCCCCEEEccCCCcc
Confidence 677777777777554
No 53
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=4.4e-26 Score=219.05 Aligned_cols=251 Identities=16% Similarity=0.176 Sum_probs=156.9
Q ss_pred CCCCCCcCEEECCCCc-ccc-cccccccCC-------CCCCEEECcCCCCCCCCCh--hHHhcCCCCcEEEccCCccccc
Q 047128 1 MGSLTSLVWLRLGKNK-LSV-DILVSLKNC-------TTLESLDVGENEFVGNIPT--WIGERFSRMVVLILRSNKFHGP 69 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~-i~~-~~~~~l~~l-------~~L~~L~l~~n~l~~~lp~--~~~~~l~~L~~L~L~~n~l~~~ 69 (312)
|+++++|++|+|++|+ +++ .+|..+.++ ++|++|++++|.+. .+|. .+. .+++|+.|++++|+++ .
T Consensus 511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~-~L~~L~~L~Ls~N~l~-~ 587 (876)
T 4ecn_A 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ-KMVKLGLLDCVHNKVR-H 587 (876)
T ss_dssp GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT-TCTTCCEEECTTSCCC-B
T ss_pred HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh-cCCCCCEEECCCCCcc-c
Confidence 3467788888888887 776 566544443 47888888888887 7777 555 7788888888888877 6
Q ss_pred CCcCCCCCCCCcEEEccCCCCCcccchhhHhhcc-cccccccccccccccCCCCccc----eeeeeeeee----------
Q 047128 70 LPTRLCDLPFLQILDIADTNLSGAIPNWINNLTG-MVTSCSFTRSVQQYLPLPIDVG----VILVEKASV---------- 134 (312)
Q Consensus 70 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~l~l~~n~~~~~~~~~~~~~----~~~~~~~~~---------- 134 (312)
+| .+..+++|+.|++++|.++ .+|..+..+++ |+.|++.+|.+.. ++..+... ...+....+
T Consensus 588 lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~ 664 (876)
T 4ecn_A 588 LE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664 (876)
T ss_dssp CC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-CCSCCCTTCSSCEEEEECCSSCTTTTSSSCS
T ss_pred ch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-CchhhhccccCCCCEEECcCCcCCCccccch
Confidence 66 6777788888888888777 67777777777 7777777777662 22221110 111110000
Q ss_pred -------------------eecCcccchHHHhccccEEEcCCCcccccCChhhhc--------CCCCCEEEccCCCCccc
Q 047128 135 -------------------VSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTN--------LKALHSLNFSYNSFTRR 187 (312)
Q Consensus 135 -------------------~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~--------l~~L~~L~Ls~n~l~~~ 187 (312)
.........+..+++|+.|++++|+++ .+|..+.. +++|++|+|++|+++ .
T Consensus 665 ~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~ 742 (876)
T 4ecn_A 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-S 742 (876)
T ss_dssp SCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-C
T ss_pred hhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-c
Confidence 011111122334566777777777766 44433322 126777777777776 5
Q ss_pred cChhhc--CCCCCcEEECCCccCCccCCccccCCCCCCeEeccc------CcccccCCCC-CCCCCCccccccCCCCCCC
Q 047128 188 IPESIG--VMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSN------NNLTGKIPSS-TQLQSFDVSSFAGNDLCGA 258 (312)
Q Consensus 188 ~p~~~~--~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~------N~l~~~~~~~-~~l~~l~~~~l~~n~l~~~ 258 (312)
+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++++ |++.+.+|.. ..+++|+.+++++|.+...
T Consensus 743 lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~I 821 (876)
T 4ecn_A 743 LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV 821 (876)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC
T ss_pred chHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCcc
Confidence 666665 66777777777777774 566666777777777755 5555555533 5566777777777766434
Q ss_pred CC
Q 047128 259 PI 260 (312)
Q Consensus 259 p~ 260 (312)
|.
T Consensus 822 p~ 823 (876)
T 4ecn_A 822 DE 823 (876)
T ss_dssp CS
T ss_pred CH
Confidence 43
No 54
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=6.3e-26 Score=198.12 Aligned_cols=244 Identities=22% Similarity=0.305 Sum_probs=169.7
Q ss_pred CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128 1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL 80 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 80 (312)
|.++++|++|++++|.++. + ..+.++++|++|++++|.+. .++. +. .+++|+.|++++|...... ..+..+++|
T Consensus 84 ~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~-~~~~-~~-~l~~L~~L~l~~n~~~~~~-~~~~~l~~L 157 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNIS-DISP-LA-NLTKMYSLNLGANHNLSDL-SPLSNMTGL 157 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCC-CCGG-GT-TCTTCCEEECTTCTTCCCC-GGGTTCTTC
T ss_pred hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCccc-Cchh-hc-cCCceeEEECCCCCCcccc-cchhhCCCC
Confidence 4678999999999999984 3 36899999999999999998 6766 43 7999999999999766344 448889999
Q ss_pred cEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcc
Q 047128 81 QILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF 160 (312)
Q Consensus 81 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i 160 (312)
++|++++|.+....+ +..+++|+.+++.+|.+........................ ...+..+++|++|++++|++
T Consensus 158 ~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKI 233 (347)
T ss_dssp CEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCC
T ss_pred cEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCC--CchhhcCCcCCEEEccCCcc
Confidence 999999998875443 78889999999998887754431111111111111111111 11155667788888888877
Q ss_pred cccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC-
Q 047128 161 SGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS- 239 (312)
Q Consensus 161 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~- 239 (312)
++..+ +..+++|++|++++|.+++ + ..+..+++|++|++++|++++ + +.+..+++|++|++++|++++..+..
T Consensus 234 ~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l 307 (347)
T 4fmz_A 234 TDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVI 307 (347)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred CCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHh
Confidence 74333 6777778888888777763 3 346677777777777777774 3 34667777777777777776654432
Q ss_pred CCCCCCccccccCCCCCCCCC
Q 047128 240 TQLQSFDVSSFAGNDLCGAPI 260 (312)
Q Consensus 240 ~~l~~l~~~~l~~n~l~~~p~ 260 (312)
..+++++.+++++|.+.+.+.
T Consensus 308 ~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp HTCTTCSEEECCSSSCCCCGG
T ss_pred hccccCCEEEccCCccccccC
Confidence 456777777777777666543
No 55
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.2e-26 Score=211.44 Aligned_cols=218 Identities=21% Similarity=0.178 Sum_probs=177.3
Q ss_pred CCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcE
Q 047128 3 SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQI 82 (312)
Q Consensus 3 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 82 (312)
.+++|++|+|++|.+++..|..|.++++|++|++++|.+++..| +. .+++|++|++++|.+++. |. .++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~-~l~~L~~L~Ls~N~l~~l-~~----~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE-SLSTLRTLDLNNNYVQEL-LV----GPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CT-TCTTCCEEECCSSEEEEE-EE----CTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cc-cCCCCCEEEecCCcCCCC-CC----CCCcCE
Confidence 35689999999999998888899999999999999999985444 43 899999999999999843 32 388999
Q ss_pred EEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccc
Q 047128 83 LDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG 162 (312)
Q Consensus 83 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~ 162 (312)
|++++|.+++..+. .+++|+.|++.+|.+....+ ..+..+++|+.|++++|.+++
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~----------------------~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD----------------------LDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGG----------------------BCGGGGSSEEEEECTTSCCCE
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCc----------------------hhhcCCCCCCEEECCCCCCCC
Confidence 99999999866554 45789999999998875433 233457789999999999998
Q ss_pred cCChhhh-cCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCC
Q 047128 163 KIPLEVT-NLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQ 241 (312)
Q Consensus 163 ~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 241 (312)
..|..+. .+++|++|+|++|.+++. |. ...+++|+.|++++|.+++ +|..+..+++|+.|++++|++++.++....
T Consensus 159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~ 235 (487)
T 3oja_A 159 VNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRF 235 (487)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCC
T ss_pred cChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhcc
Confidence 7887775 789999999999999854 33 3358899999999999995 444588889999999999999987666677
Q ss_pred CCCCccccccCCCCC
Q 047128 242 LQSFDVSSFAGNDLC 256 (312)
Q Consensus 242 l~~l~~~~l~~n~l~ 256 (312)
+++++.+++.+|.+.
T Consensus 236 l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 236 SQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTCCEEECTTCCBC
T ss_pred CCCCCEEEcCCCCCc
Confidence 888888999998665
No 56
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=3.2e-26 Score=193.34 Aligned_cols=197 Identities=18% Similarity=0.215 Sum_probs=124.4
Q ss_pred CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128 4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL 83 (312)
Q Consensus 4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 83 (312)
+++|+.|++++|.++. . ..+..+++|++|++++|.++ .++ .+. .+++|++|++++|.+++..+..+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLH-DIS-ALK-ELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCC-CCG-GGT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCC-Cch-hhc-CCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 3455555555555542 2 23455555555555555555 332 222 45555555555555554444445555555555
Q ss_pred EccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc
Q 047128 84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK 163 (312)
Q Consensus 84 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~ 163 (312)
++++|.+++..+..+.. +++|++|++++|.+++.
T Consensus 115 ~L~~n~l~~~~~~~~~~----------------------------------------------l~~L~~L~L~~n~l~~~ 148 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDK----------------------------------------------LTNLTYLNLAHNQLQSL 148 (272)
T ss_dssp ECTTSCCCCCCTTTTTT----------------------------------------------CTTCCEEECCSSCCCCC
T ss_pred ECCCCcCCccCHHHhcc----------------------------------------------CCCCCEEECCCCccCcc
Confidence 55555555433333333 44577888888888866
Q ss_pred CChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCCC
Q 047128 164 IPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQ 243 (312)
Q Consensus 164 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~ 243 (312)
.+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.|.+|
T Consensus 149 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~------ 222 (272)
T 3rfs_A 149 PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP------ 222 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT------
T ss_pred CHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc------
Confidence 66667788888888888888886666667788888888888888887666677788888888888888887655
Q ss_pred CCccccccCCCCCC
Q 047128 244 SFDVSSFAGNDLCG 257 (312)
Q Consensus 244 ~l~~~~l~~n~l~~ 257 (312)
.++.+++..|.+.|
T Consensus 223 ~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 223 GIRYLSEWINKHSG 236 (272)
T ss_dssp TTHHHHHHHHHTGG
T ss_pred HHHHHHHHHHhCCC
Confidence 34444444454443
No 57
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.2e-25 Score=190.16 Aligned_cols=221 Identities=16% Similarity=0.163 Sum_probs=182.2
Q ss_pred EEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCC
Q 047128 9 WLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADT 88 (312)
Q Consensus 9 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 88 (312)
..+-.+..++ .+|..+. ++|++|++++|.++ .++...+.++++|++|++++|++++..+..|..+++|++|++++|
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence 4556666665 4665553 57999999999999 666544448999999999999999777778999999999999999
Q ss_pred CCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc-CChh
Q 047128 89 NLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK-IPLE 167 (312)
Q Consensus 89 ~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~-~p~~ 167 (312)
.+++..+..+..+++|+.+++.+|.+....+.. +..+++|++|++++|.+++. +|..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----------------------~~~l~~L~~L~l~~n~l~~~~l~~~ 144 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFP----------------------IGHLKTLKELNVAHNLIQSFKLPEY 144 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCC----------------------CTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchh----------------------cccCCCCCEEECcCCccceecCchh
Confidence 999888889999999999999999887543322 23477899999999999864 5889
Q ss_pred hhcCCCCCEEEccCCCCccccChhhcCCCCCc----EEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC-CCC
Q 047128 168 VTNLKALHSLNFSYNSFTRRIPESIGVMTSLE----SIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-TQL 242 (312)
Q Consensus 168 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~----~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l 242 (312)
+..+++|++|++++|++++..+..+..+++|+ +|++++|.+++..+..+ ...+|++|++++|++++.++.. ..+
T Consensus 145 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l 223 (276)
T 2z62_A 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRL 223 (276)
T ss_dssp GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTC
T ss_pred hccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhccc
Confidence 99999999999999999976667777666676 99999999996555544 4458999999999999877654 678
Q ss_pred CCCccccccCCCCC
Q 047128 243 QSFDVSSFAGNDLC 256 (312)
Q Consensus 243 ~~l~~~~l~~n~l~ 256 (312)
.+++.+++++|++.
T Consensus 224 ~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 224 TSLQKIWLHTNPWD 237 (276)
T ss_dssp CSCCEEECCSSCBC
T ss_pred ccccEEEccCCccc
Confidence 89999999999554
No 58
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=2.4e-25 Score=194.49 Aligned_cols=241 Identities=20% Similarity=0.274 Sum_probs=186.4
Q ss_pred CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128 2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ 81 (312)
Q Consensus 2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 81 (312)
..+++|++|++++|.+++..+ +.++++|++|++++|.++ .+| .+. .+++|++|++++|.++. ++. +..+++|+
T Consensus 63 ~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~-~~~-~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~ 135 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS-ALQ-NLTNLRELYLNEDNISD-ISP-LANLTKMY 135 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGT-TCTTCSEEECTTSCCCC-CGG-GTTCTTCC
T ss_pred hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch-HHc-CCCcCCEEECcCCcccC-chh-hccCCcee
Confidence 468899999999999985433 899999999999999998 666 344 89999999999999984 444 88999999
Q ss_pred EEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccc
Q 047128 82 ILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS 161 (312)
Q Consensus 82 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~ 161 (312)
+|++++|......+ .+..+++|+.+++.+|.+....................... .. ..+..+++|+.+++++|.++
T Consensus 136 ~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 136 SLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIE-DI-SPLASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp EEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCC
T ss_pred EEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccc-cc-ccccCCCccceeecccCCCC
Confidence 99999996653443 48899999999999998776544111111111111111111 11 12667889999999999998
Q ss_pred ccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCC
Q 047128 162 GKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQ 241 (312)
Q Consensus 162 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 241 (312)
+..+ +..+++|++|++++|++++ .+. +..+++|++|++++|.+++ + +.+..+++|++|++++|++++. +....
T Consensus 213 ~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~ 285 (347)
T 4fmz_A 213 DITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI-SVLNN 285 (347)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC-GGGGG
T ss_pred CCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC-hhhcC
Confidence 5544 7889999999999999984 444 7889999999999999984 4 4578899999999999999875 55567
Q ss_pred CCCCccccccCCCCCCCC
Q 047128 242 LQSFDVSSFAGNDLCGAP 259 (312)
Q Consensus 242 l~~l~~~~l~~n~l~~~p 259 (312)
+++++.+++++|.+.+.+
T Consensus 286 l~~L~~L~L~~n~l~~~~ 303 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGNED 303 (347)
T ss_dssp CTTCSEEECCSSCCCGGG
T ss_pred CCCCCEEECcCCcCCCcC
Confidence 888999999999877554
No 59
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=9e-26 Score=208.92 Aligned_cols=232 Identities=19% Similarity=0.212 Sum_probs=151.2
Q ss_pred CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCC-CCChhHHhcCCCCcEEEccCCcccccCC-cCCCCCC
Q 047128 1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVG-NIPTWIGERFSRMVVLILRSNKFHGPLP-TRLCDLP 78 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~ 78 (312)
|+++++|++|++++|.+++..+..|.++++|++|++++|++++ .+|..+. .+++|++|++++|.+.+.+| ..+..++
T Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCT-TCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhh-ccCCccEEECCCCccccccCHhhhhccc
Confidence 5678999999999999987777779999999999999999884 2345554 78899999999988433444 5688888
Q ss_pred CCcEEEccCCCCCcccchhhHh------------------------hccccccccccccccccc--CCCCcc---ceeee
Q 047128 79 FLQILDIADTNLSGAIPNWINN------------------------LTGMVTSCSFTRSVQQYL--PLPIDV---GVILV 129 (312)
Q Consensus 79 ~L~~L~l~~n~l~~~~~~~~~~------------------------l~~L~~l~l~~n~~~~~~--~~~~~~---~~~~~ 129 (312)
+|++|++++|.+++..|..+.. +++|+.+++.+|.+.... +..... .....
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 228 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence 8888888888887766666554 455555666666554421 000000 00000
Q ss_pred ------------------------------ee------------------------------------------------
Q 047128 130 ------------------------------EK------------------------------------------------ 131 (312)
Q Consensus 130 ------------------------------~~------------------------------------------------ 131 (312)
..
T Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~ 308 (549)
T 2z81_A 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308 (549)
T ss_dssp EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred eccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence 00
Q ss_pred ------eeeee--cCccc-chHHHhccccEEEcCCCcccccCCh---hhhcCCCCCEEEccCCCCccccC--hhhcCCCC
Q 047128 132 ------ASVVS--KGEMV-DYEDILNLVRMIDISRNNFSGKIPL---EVTNLKALHSLNFSYNSFTRRIP--ESIGVMTS 197 (312)
Q Consensus 132 ------~~~~~--~~~~~-~~~~~~~~L~~L~ls~n~i~~~~p~---~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~ 197 (312)
+.... -..++ ..+..+++|++|++++|++++..|. .+..+++|++|++++|++++..+ ..+..+++
T Consensus 309 ~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~ 388 (549)
T 2z81_A 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388 (549)
T ss_dssp STTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred cccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC
Confidence 00000 00011 1224577788888888887765543 25667777777777777763322 34667777
Q ss_pred CcEEECCCccCCccCCccccCCCCCCeEecccCcccc
Q 047128 198 LESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG 234 (312)
Q Consensus 198 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 234 (312)
|++|++++|+++ .+|..+..+++|++|++++|+++.
T Consensus 389 L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~ 424 (549)
T 2z81_A 389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV 424 (549)
T ss_dssp CCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC
T ss_pred CCEEECCCCCCc-cCChhhcccccccEEECCCCCccc
Confidence 788888888777 567666667777777777776654
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.4e-25 Score=208.49 Aligned_cols=247 Identities=20% Similarity=0.134 Sum_probs=196.1
Q ss_pred CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128 2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ 81 (312)
Q Consensus 2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 81 (312)
..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|.. .+++|+.|++++|.+.+..+. ..+++|+
T Consensus 279 ~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~---~l~~L~~L~l~~n~~~~~~~~--~~~~~L~ 350 (570)
T 2z63_A 279 NCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTL---KLKSLKRLTFTSNKGGNAFSE--VDLPSLE 350 (570)
T ss_dssp GGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBC---BCSSCCEEEEESCBSCCBCCC--CBCTTCC
T ss_pred cCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcc---cccccCEEeCcCCcccccccc--ccCCCCC
Confidence 45789999999999998 577788888 9999999999999 88873 689999999999998866554 7789999
Q ss_pred EEEccCCCCCccc--chhhHhhcccccccccccccccccCCCCcc--ceeeeeeeeeeecCc-ccchHHHhccccEEEcC
Q 047128 82 ILDIADTNLSGAI--PNWINNLTGMVTSCSFTRSVQQYLPLPIDV--GVILVEKASVVSKGE-MVDYEDILNLVRMIDIS 156 (312)
Q Consensus 82 ~L~l~~n~l~~~~--~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~L~~L~ls 156 (312)
+|++++|.+++.. +..+..+++|+.+++.+|.+....+. +.. .............+. ....+..+++|++|+++
T Consensus 351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 429 (570)
T 2z63_A 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429 (570)
T ss_dssp EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred EEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence 9999999988554 77889999999999999987754332 110 111111111111111 12355678889999999
Q ss_pred CCcccccCChhhhcCCCCCEEEccCCCCc-cccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCccccc
Q 047128 157 RNNFSGKIPLEVTNLKALHSLNFSYNSFT-RRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGK 235 (312)
Q Consensus 157 ~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 235 (312)
+|.+++..|..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++.
T Consensus 430 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 509 (570)
T 2z63_A 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509 (570)
T ss_dssp TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC
Confidence 99999888888899999999999999987 56888888999999999999999987788899999999999999999987
Q ss_pred CCCC-CCCCCCccccccCCCCCC
Q 047128 236 IPSS-TQLQSFDVSSFAGNDLCG 257 (312)
Q Consensus 236 ~~~~-~~l~~l~~~~l~~n~l~~ 257 (312)
++.. ..+++++.+++.+|++.+
T Consensus 510 ~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 510 PDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCC
T ss_pred CHHHhhcccCCcEEEecCCcccC
Confidence 7654 678888888888886543
No 61
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=2.4e-25 Score=206.92 Aligned_cols=115 Identities=16% Similarity=0.145 Sum_probs=88.2
Q ss_pred CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128 1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL 80 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 80 (312)
|.++++|++|++++|.+++..+..|.++++|++|++++|+++ .++...+.++++|++|++++|+++...+..++.+++|
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 467888888888888888777778888888888888888888 5554433478888888888888875444467888888
Q ss_pred cEEEccCCCCCc-ccchhhHhhccccccccccccccc
Q 047128 81 QILDIADTNLSG-AIPNWINNLTGMVTSCSFTRSVQQ 116 (312)
Q Consensus 81 ~~L~l~~n~l~~-~~~~~~~~l~~L~~l~l~~n~~~~ 116 (312)
++|++++|.+++ ..|..+..+++|+.|++.+|.+..
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 888888888775 357778888888888887776654
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=1.8e-25 Score=209.94 Aligned_cols=110 Identities=24% Similarity=0.131 Sum_probs=100.5
Q ss_pred CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEc
Q 047128 6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDI 85 (312)
Q Consensus 6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 85 (312)
++++|||++|+|++..+.+|.++++|++|++++|+++ .+|.+.+.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 6899999999999888889999999999999999999 788776668999999999999999766677999999999999
Q ss_pred cCCCCCcccchhhHhhccccccccccccccc
Q 047128 86 ADTNLSGAIPNWINNLTGMVTSCSFTRSVQQ 116 (312)
Q Consensus 86 ~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~ 116 (312)
++|++++..+..|+.+++|+.|++.+|.+..
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQS 162 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCcccc
Confidence 9999997777789999999999999998753
No 63
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=2.5e-25 Score=189.45 Aligned_cols=178 Identities=19% Similarity=0.167 Sum_probs=158.8
Q ss_pred CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128 5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD 84 (312)
Q Consensus 5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 84 (312)
+++++|++++|.+++..+..|.++++|++|++++|.++ .++.. ..+++|++|++++|+++ .+|..+..+++|++|+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence 57999999999999888889999999999999999999 66655 37999999999999999 7888899999999999
Q ss_pred ccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccC
Q 047128 85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI 164 (312)
Q Consensus 85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~ 164 (312)
+++|+++...+..|..+++|+.|++.+|.+....+ ..+..+++|+.|++++|++++..
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~----------------------~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP----------------------GLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT----------------------TTTTTCTTCCEEECTTSCCSCCC
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh----------------------hhcccccCCCEEECCCCcCCccC
Confidence 99999997777899999999999999998875433 22345778999999999999766
Q ss_pred ChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCC
Q 047128 165 PLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLS 209 (312)
Q Consensus 165 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 209 (312)
+..|..+++|++|++++|+++ .+|..+...++|+.+++++|.+.
T Consensus 165 ~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 165 AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred HHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 677889999999999999998 78888888899999999999986
No 64
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.93 E-value=1.4e-25 Score=192.92 Aligned_cols=199 Identities=19% Similarity=0.181 Sum_probs=100.4
Q ss_pred CcCEEECCCCcccccccccc--cCCCCCCEEECcCCCCCCCCC----hhHHhcCCCCcEEEccCCcccccCCcCCCCCCC
Q 047128 6 SLVWLRLGKNKLSVDILVSL--KNCTTLESLDVGENEFVGNIP----TWIGERFSRMVVLILRSNKFHGPLPTRLCDLPF 79 (312)
Q Consensus 6 ~L~~L~L~~n~i~~~~~~~l--~~l~~L~~L~l~~n~l~~~lp----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 79 (312)
+|++|++++|.+++..|..+ ..+++|++|++++|.+.+..+ ..++ .+++|++|++++|++++..+..+..+++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 35555555555555555444 555555555555555553333 1122 3555555555555555444455555555
Q ss_pred CcEEEccCCCCCcc--cc--hhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEc
Q 047128 80 LQILDIADTNLSGA--IP--NWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDI 155 (312)
Q Consensus 80 L~~L~l~~n~l~~~--~~--~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 155 (312)
|++|++++|++.+. .+ ..+..++ +|++|++
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~----------------------------------------------~L~~L~L 204 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFP----------------------------------------------AIQNLAL 204 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSC----------------------------------------------CCCSCBC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCC----------------------------------------------CCCEEEC
Confidence 55555555554321 11 1113334 4555555
Q ss_pred CCCcccccCCh----hhhcCCCCCEEEccCCCCccccChhhcCC---CCCcEEECCCccCCccCCccccCCCCCCeEecc
Q 047128 156 SRNNFSGKIPL----EVTNLKALHSLNFSYNSFTRRIPESIGVM---TSLESIDFSTNQLSGEIPESMSSLTFSNHLNLS 228 (312)
Q Consensus 156 s~n~i~~~~p~----~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l---~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 228 (312)
++|+++ ..+. .+..+++|++|++++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|+++
T Consensus 205 s~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls 280 (310)
T 4glp_A 205 RNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLS 280 (310)
T ss_dssp CSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECC
T ss_pred CCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECC
Confidence 555554 2221 13455566666666666554444444333 45666666666665 4444432 456666666
Q ss_pred cCcccccCCCCCCCCCCccccccCCCCC
Q 047128 229 NNNLTGKIPSSTQLQSFDVSSFAGNDLC 256 (312)
Q Consensus 229 ~N~l~~~~~~~~~l~~l~~~~l~~n~l~ 256 (312)
+|++++. |....+++++.+++++|++.
T Consensus 281 ~N~l~~~-~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 281 SNRLNRA-PQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SCCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred CCcCCCC-chhhhCCCccEEECcCCCCC
Confidence 6666543 22344555555555555544
No 65
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=7.5e-25 Score=198.85 Aligned_cols=86 Identities=26% Similarity=0.303 Sum_probs=42.0
Q ss_pred hcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCccc
Q 047128 169 TNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVS 248 (312)
Q Consensus 169 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~ 248 (312)
..+++|++|++++|++++..+ +..+++|++|++++|++++..| +..+++|++|++++|++++. +....+++++.+
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L 358 (466)
T 1o6v_A 284 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWL 358 (466)
T ss_dssp TTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEE
T ss_pred cCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCCCCEE
Confidence 344444444444444442211 3444555555555555553332 44455555555555555543 333455566666
Q ss_pred cccCCCCCCCC
Q 047128 249 SFAGNDLCGAP 259 (312)
Q Consensus 249 ~l~~n~l~~~p 259 (312)
++++|.+.+.+
T Consensus 359 ~l~~n~l~~~~ 369 (466)
T 1o6v_A 359 SAGHNQISDLT 369 (466)
T ss_dssp ECCSSCCCBCG
T ss_pred eCCCCccCccc
Confidence 66666555544
No 66
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.93 E-value=6.5e-26 Score=187.78 Aligned_cols=196 Identities=13% Similarity=0.152 Sum_probs=123.3
Q ss_pred CCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCc-ccccCCcCCCCCCCCcEEEccC-CCCCcccchhhHhhcccccc
Q 047128 30 TLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK-FHGPLPTRLCDLPFLQILDIAD-TNLSGAIPNWINNLTGMVTS 107 (312)
Q Consensus 30 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~l 107 (312)
+|++|++++|+++ .+|...+.++++|++|++++|+ ++...+..|..+++|++|++++ |.++...+..|..+++|+.+
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 4455555555554 3333322244555555555553 4433333444455555555554 44443333444445555555
Q ss_pred cccccccccccCCCCccceeeeeeeeeeecCcccchHHHhcccc---EEEcCCC-cccccCChhhhcCCCCC-EEEccCC
Q 047128 108 CSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVR---MIDISRN-NFSGKIPLEVTNLKALH-SLNFSYN 182 (312)
Q Consensus 108 ~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~---~L~ls~n-~i~~~~p~~~~~l~~L~-~L~Ls~n 182 (312)
++.+|.+..... +..+++|+ +|++++| .+++..+..|..+++|+ +|++++|
T Consensus 111 ~l~~n~l~~lp~------------------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 111 GIFNTGLKMFPD------------------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp EEEEECCCSCCC------------------------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred eCCCCCCccccc------------------------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 554444432110 11233355 8999999 89877777889999999 9999999
Q ss_pred CCccccChhhcCCCCCcEEECCCcc-CCccCCccccCC-CCCCeEecccCcccccCCCCCCCCCCccccccCC
Q 047128 183 SFTRRIPESIGVMTSLESIDFSTNQ-LSGEIPESMSSL-TFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGN 253 (312)
Q Consensus 183 ~l~~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n 253 (312)
+++ .+|......++|++|++++|+ +++..+..|..+ ++|+.|++++|++++.++. .+.+++.+++.++
T Consensus 167 ~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 167 GFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 998 555543334899999999995 986667788888 9999999999999865544 5777777776665
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=8.8e-27 Score=201.10 Aligned_cols=222 Identities=14% Similarity=0.084 Sum_probs=181.1
Q ss_pred CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128 1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL 80 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 80 (312)
|+++++|++|++++|.+++..+ +..+++|++|++++|+++ .++ ..++|++|++++|++++..+. .+++|
T Consensus 54 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L 122 (317)
T 3o53_A 54 LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNISRVSCS---RGQGK 122 (317)
T ss_dssp HTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEE-----ECTTCCEEECCSSCCSEEEEC---CCSSC
T ss_pred hhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-ccc-----CCCCcCEEECCCCccCCcCcc---ccCCC
Confidence 3578999999999999986554 899999999999999998 555 358999999999999965443 36889
Q ss_pred cEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcc
Q 047128 81 QILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF 160 (312)
Q Consensus 81 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i 160 (312)
++|++++|.+++..+..+..+++|+.|++.+|.+....+ ..+...+++|++|++++|.+
T Consensus 123 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------------~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF---------------------AELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp EEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG---------------------GGGGGGTTTCCEEECTTSCC
T ss_pred CEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH---------------------HHHhhccCcCCEEECCCCcC
Confidence 999999999998878899999999999999998875322 12223568899999999999
Q ss_pred cccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccc-cCCCC
Q 047128 161 SGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG-KIPSS 239 (312)
Q Consensus 161 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~~~~ 239 (312)
++. + ....+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++ .++..
T Consensus 182 ~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 257 (317)
T 3o53_A 182 YDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (317)
T ss_dssp CEE-E-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHH
T ss_pred ccc-c-cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHH
Confidence 965 3 2335899999999999998 56666889999999999999999 678889999999999999999983 22222
Q ss_pred -CCCCCCccccccCC-CCCCC
Q 047128 240 -TQLQSFDVSSFAGN-DLCGA 258 (312)
Q Consensus 240 -~~l~~l~~~~l~~n-~l~~~ 258 (312)
..++.++.+++.++ .+.+.
T Consensus 258 ~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 258 FSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp HHTCHHHHHHHHHHHHHHHSS
T ss_pred HhccccceEEECCCchhccCC
Confidence 45666777777655 44444
No 68
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=6.8e-25 Score=199.13 Aligned_cols=109 Identities=23% Similarity=0.333 Sum_probs=68.6
Q ss_pred HHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCC
Q 047128 144 EDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSN 223 (312)
Q Consensus 144 ~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~ 223 (312)
+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++. +. +..+++|++|++++|++++..+ +..+++|+
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence 3445566666666666664333 55666666666666666633 22 5566777777777777764332 56677777
Q ss_pred eEecccCcccccCCCCCCCCCCccccccCCCCCCCC
Q 047128 224 HLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAP 259 (312)
Q Consensus 224 ~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~~p 259 (312)
.|++++|++++..+ ...+++|+.+++.+|.+.+.+
T Consensus 313 ~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~ 347 (466)
T 1o6v_A 313 YLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS 347 (466)
T ss_dssp EEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred EEECcCCcCCCchh-hccCccCCEeECCCCccCCch
Confidence 77777777776554 456677777777777666654
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=6.7e-27 Score=201.40 Aligned_cols=228 Identities=19% Similarity=0.205 Sum_probs=182.6
Q ss_pred CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCC-CCCChhHH------hcCCCCcEEEccCCcccccCCcCC--
Q 047128 4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFV-GNIPTWIG------ERFSRMVVLILRSNKFHGPLPTRL-- 74 (312)
Q Consensus 4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~-~~lp~~~~------~~l~~L~~L~L~~n~l~~~~~~~~-- 74 (312)
.++|+++++++|.+ .+|..+... |++|++++|.+. ..+|..++ .++++|++|++++|++++..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 45688889999998 566655443 889999999984 35676553 148999999999999998888876
Q ss_pred CCCCCCcEEEccCCCCCcccchhhHhh-----cccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhcc
Q 047128 75 CDLPFLQILDIADTNLSGAIPNWINNL-----TGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNL 149 (312)
Q Consensus 75 ~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (312)
..+++|++|++++|.+++. |..+..+ ++|+.|++.+|.+....+.. +..+++
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~----------------------~~~l~~ 174 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ----------------------VRVFPA 174 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT----------------------CCCCSS
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHH----------------------hccCCC
Confidence 8999999999999999977 8888888 89999999999987644322 234778
Q ss_pred ccEEEcCCCccccc--CChhh--hcCCCCCEEEccCCCCcc--ccC-hhhcCCCCCcEEECCCccCCccCC-ccccCCCC
Q 047128 150 VRMIDISRNNFSGK--IPLEV--TNLKALHSLNFSYNSFTR--RIP-ESIGVMTSLESIDFSTNQLSGEIP-ESMSSLTF 221 (312)
Q Consensus 150 L~~L~ls~n~i~~~--~p~~~--~~l~~L~~L~Ls~n~l~~--~~p-~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~ 221 (312)
|++|++++|++.+. .+..+ ..+++|++|++++|++++ .++ ..+..+++|++|++++|++++..| ..+..+++
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 99999999998765 23344 789999999999999983 222 334578999999999999997765 45667899
Q ss_pred CCeEecccCcccccCCCCCCCCCCccccccCCCCCCCCC
Q 047128 222 SNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPI 260 (312)
Q Consensus 222 L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~~p~ 260 (312)
|++|++++|+++..+.... .+++.+++++|.+.+.|.
T Consensus 255 L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~ 291 (312)
T 1wwl_A 255 LNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS 291 (312)
T ss_dssp CCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC
T ss_pred CCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh
Confidence 9999999999994443333 789999999999988754
No 70
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=2.9e-24 Score=194.12 Aligned_cols=225 Identities=17% Similarity=0.158 Sum_probs=166.8
Q ss_pred CCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcE
Q 047128 3 SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQI 82 (312)
Q Consensus 3 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 82 (312)
++++|++|++++|.+++. | .+..+++|++|++++|.++ .+| +. .+++|++|++++|++++. + ++.+++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~--~~-~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~ 110 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD--LS-QNTNLTYLACDSNKLTNL-D--VTPLTKLTY 110 (457)
T ss_dssp HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC--CT-TCTTCSEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc--cc-cCCCCCEEECcCCCCcee-e--cCCCCcCCE
Confidence 478999999999999854 5 6889999999999999999 666 44 799999999999999954 4 889999999
Q ss_pred EEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccc
Q 047128 83 LDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG 162 (312)
Q Consensus 83 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~ 162 (312)
|++++|++++. + +..+++|+.+++.+|.+... +..................+.. .+..+++|++|++++|++++
T Consensus 111 L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 111 LNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp EECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred EECCCCcCCee-c--CCCCCcCCEEECCCCcccee-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence 99999999864 4 88999999999999998864 2111111111111111011111 24457788899999998885
Q ss_pred cCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCC
Q 047128 163 KIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQL 242 (312)
Q Consensus 163 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 242 (312)
+| +..+++|++|++++|++++. + ++.+++|++|++++|++++ +| +..+++|+.|++++|++++.++ ..+
T Consensus 185 -l~--l~~l~~L~~L~l~~N~l~~~-~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~--~~l 253 (457)
T 3bz5_A 185 -LD--VSQNKLLNRLNCDTNNITKL-D--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV--STL 253 (457)
T ss_dssp -CC--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC--TTC
T ss_pred -ec--cccCCCCCEEECcCCcCCee-c--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH--HHC
Confidence 44 77888899999999988843 2 6788889999999999985 56 7788889999999999887653 234
Q ss_pred CCCccccccCC
Q 047128 243 QSFDVSSFAGN 253 (312)
Q Consensus 243 ~~l~~~~l~~n 253 (312)
.+++.+++.+|
T Consensus 254 ~~L~~L~l~~n 264 (457)
T 3bz5_A 254 SKLTTLHCIQT 264 (457)
T ss_dssp TTCCEEECTTC
T ss_pred CCCCEEeccCC
Confidence 44443333333
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=1e-24 Score=184.08 Aligned_cols=182 Identities=23% Similarity=0.229 Sum_probs=156.8
Q ss_pred CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128 2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ 81 (312)
Q Consensus 2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 81 (312)
..+++|++|++++|.+++ + ..+.++++|++|++++|.++ .++...+..+++|++|++++|++++..+..+..+++|+
T Consensus 60 ~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 468999999999999985 3 47899999999999999999 67766555899999999999999977777789999999
Q ss_pred EEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccc
Q 047128 82 ILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS 161 (312)
Q Consensus 82 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~ 161 (312)
+|++++|.+++..+..+..++ +|++|++++|+++
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~----------------------------------------------~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLT----------------------------------------------NLTELDLSYNQLQ 170 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCT----------------------------------------------TCCEEECCSSCCC
T ss_pred EEECCCCccCccCHHHhccCc----------------------------------------------cCCEEECCCCCcC
Confidence 999999999866555554444 4888999999999
Q ss_pred ccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC
Q 047128 162 GKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS 239 (312)
Q Consensus 162 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~ 239 (312)
+..+..+..+++|++|++++|++++..|..+..+++|+.|++++|.+.+. ++.|+.++++.|+++|.+|..
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 77777789999999999999999977777788999999999999988743 557899999999999988754
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.1e-24 Score=198.48 Aligned_cols=215 Identities=13% Similarity=0.069 Sum_probs=176.9
Q ss_pred CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128 1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL 80 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 80 (312)
|+++++|++|+|++|.+++..| +.++++|++|++++|.++ .+| ..++|+.|++++|.+++..+. .+++|
T Consensus 54 ~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-----~~~~L~~L~L~~N~l~~~~~~---~l~~L 122 (487)
T 3oja_A 54 LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNISRVSCS---RGQGK 122 (487)
T ss_dssp GTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEE-----ECTTCCEEECCSSCCCCEEEC---CCSSC
T ss_pred HhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCC-----CCCCcCEEECcCCcCCCCCcc---ccCCC
Confidence 4678999999999999987665 899999999999999998 555 348999999999999965543 46889
Q ss_pred cEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcc
Q 047128 81 QILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF 160 (312)
Q Consensus 81 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i 160 (312)
++|++++|.+++..|..+..+++|+.|++.+|.+....+. .+...+++|+.|++++|.+
T Consensus 123 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------------~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA---------------------ELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp EEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG---------------------GGGGGTTTCCEEECTTSCC
T ss_pred CEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH---------------------HHhhhCCcccEEecCCCcc
Confidence 9999999999988888999999999999999998754321 1223578899999999999
Q ss_pred cccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCccccc-CCC-
Q 047128 161 SGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGK-IPS- 238 (312)
Q Consensus 161 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~~~- 238 (312)
++..+ ...+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.+. +|.
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred ccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 96633 3468999999999999995 5555889999999999999999 5788889999999999999999832 222
Q ss_pred CCCCCCCcccccc
Q 047128 239 STQLQSFDVSSFA 251 (312)
Q Consensus 239 ~~~l~~l~~~~l~ 251 (312)
...+..+..+++.
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 2445555555543
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.92 E-value=2.7e-24 Score=184.74 Aligned_cols=194 Identities=16% Similarity=0.269 Sum_probs=160.0
Q ss_pred CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128 4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL 83 (312)
Q Consensus 4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 83 (312)
+++|++|++++|.++. ++ .+..+++|++|++++|.+. .++. +. .+++|++|++++|++++ + ..+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~-~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP-LK-NLTKITELELSGNPLKN-V-SAIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCCSCCEEECCSCCCSC-C-GGGTTCTTCCEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh-Hc-cCCCCCEEEccCCcCCC-c-hhhcCCCCCCEE
Confidence 6789999999999974 44 6888999999999999999 6776 44 89999999999999984 4 368899999999
Q ss_pred EccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc
Q 047128 84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK 163 (312)
Q Consensus 84 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~ 163 (312)
++++|.+++. + .+..+++|+.|++.+|.+....+ +..+++|++|++++|.+++.
T Consensus 113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~------------------------l~~l~~L~~L~l~~n~l~~~ 166 (308)
T 1h6u_A 113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP------------------------LAGLTNLQYLSIGNAQVSDL 166 (308)
T ss_dssp ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG------------------------GGGCTTCCEEECCSSCCCCC
T ss_pred ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc------------------------ccCCCCccEEEccCCcCCCC
Confidence 9999999854 3 38889999999999988764321 34577899999999999854
Q ss_pred CChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccC
Q 047128 164 IPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKI 236 (312)
Q Consensus 164 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 236 (312)
.+ +..+++|++|++++|++++ ++. +..+++|++|++++|++++.. . +..+++|+.|++++|++++..
T Consensus 167 ~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~-~-l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 167 TP--LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVS-P-LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp GG--GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCG-G-GTTCTTCCEEEEEEEEEECCC
T ss_pred hh--hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCccc-c-ccCCCCCCEEEccCCeeecCC
Confidence 33 8889999999999999984 443 778899999999999998544 3 788999999999999998643
No 74
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.4e-23 Score=189.70 Aligned_cols=189 Identities=20% Similarity=0.200 Sum_probs=122.5
Q ss_pred CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128 2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ 81 (312)
Q Consensus 2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 81 (312)
+++++|++|++++|.+++. | +..+++|++|++++|+++ .+| +. .+++|++|++++|++++ +| ++.+++|+
T Consensus 61 ~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~~~--~~-~l~~L~~L~L~~N~l~~-l~--~~~l~~L~ 130 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-NLD--VT-PLTKLTYLNCDTNKLTK-LD--VSQNPLLT 130 (457)
T ss_dssp GGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-CCC--CT-TCTTCCEEECCSSCCSC-CC--CTTCTTCC
T ss_pred cccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-eee--cC-CCCcCCEEECCCCcCCe-ec--CCCCCcCC
Confidence 4678889999999988854 3 788888999999999888 555 43 78889999999998885 44 78888888
Q ss_pred EEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccc
Q 047128 82 ILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS 161 (312)
Q Consensus 82 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~ 161 (312)
+|++++|.+++. + +..+++|+.+++.+|...+..+..................+ .+ +..+++|+.|++++|+++
T Consensus 131 ~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 131 YLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp EEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCS
T ss_pred EEECCCCcccee-c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCC
Confidence 888888888754 2 66777788887777743332221111111111111111111 11 344566677777777666
Q ss_pred ccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccC
Q 047128 162 GKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEI 212 (312)
Q Consensus 162 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 212 (312)
+. .+..+++|++|++++|++++ +| +..+++|+.|++++|++++..
T Consensus 205 ~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 205 KL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred ee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 43 25566667777777776663 44 556666666666666666443
No 75
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=9.5e-24 Score=176.03 Aligned_cols=179 Identities=18% Similarity=0.193 Sum_probs=155.5
Q ss_pred CCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccccccc
Q 047128 30 TLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCS 109 (312)
Q Consensus 30 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l 109 (312)
..++++++++.++ .+|..+. ++++.|++++|++++..+..|..+++|++|++++|.+++..+..+..+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~------ 84 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE------ 84 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT------
T ss_pred CCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCc------
Confidence 4678999999999 8998764 68999999999999888888999999999999999998766655555444
Q ss_pred cccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccC
Q 047128 110 FTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIP 189 (312)
Q Consensus 110 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 189 (312)
|++|++++|++++..+..|..+++|++|++++|++++..+
T Consensus 85 ----------------------------------------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 124 (251)
T 3m19_A 85 ----------------------------------------LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124 (251)
T ss_dssp ----------------------------------------CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ----------------------------------------CCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh
Confidence 8889999999997777888999999999999999996666
Q ss_pred hhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCC-CCCCCCCccccccCCCCCCC
Q 047128 190 ESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPS-STQLQSFDVSSFAGNDLCGA 258 (312)
Q Consensus 190 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~-~~~l~~l~~~~l~~n~l~~~ 258 (312)
..+..+++|++|++++|++++..+..|..+++|++|++++|++++.++. ...+.+++.+++.+|.+.+.
T Consensus 125 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred hHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 6788999999999999999976666899999999999999999987774 36788999999999976543
No 76
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=5.3e-26 Score=201.56 Aligned_cols=239 Identities=15% Similarity=0.156 Sum_probs=169.8
Q ss_pred CCCCcCEEECCCCccccccc----ccccCCCCCCEEECcCCC---CCCCCChhHH------hcCCCCcEEEccCCcccc-
Q 047128 3 SLTSLVWLRLGKNKLSVDIL----VSLKNCTTLESLDVGENE---FVGNIPTWIG------ERFSRMVVLILRSNKFHG- 68 (312)
Q Consensus 3 ~l~~L~~L~L~~n~i~~~~~----~~l~~l~~L~~L~l~~n~---l~~~lp~~~~------~~l~~L~~L~L~~n~l~~- 68 (312)
.+++|++|+|++|.++...+ ..+..+++|++|++++|. +.+.+|.++. ..+++|++|++++|+++.
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 47889999999999986543 457789999999999964 4445666552 378999999999999986
Q ss_pred ---cCCcCCCCCCCCcEEEccCCCCCcccchhhH----hh---------cccccccccccccccccCCCCccceeeeeee
Q 047128 69 ---PLPTRLCDLPFLQILDIADTNLSGAIPNWIN----NL---------TGMVTSCSFTRSVQQYLPLPIDVGVILVEKA 132 (312)
Q Consensus 69 ---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l---------~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~ 132 (312)
.+|..+..+++|++|++++|.++...+..+. .+ ++|+.|++.+|.+.....
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~------------- 176 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM------------- 176 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH-------------
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH-------------
Confidence 3666788899999999999999755444443 44 899999999998752100
Q ss_pred eeeecCcccchHHHhccccEEEcCCCcccc-----cCChhhhcCCCCCEEEccCCCCc----cccChhhcCCCCCcEEEC
Q 047128 133 SVVSKGEMVDYEDILNLVRMIDISRNNFSG-----KIPLEVTNLKALHSLNFSYNSFT----RRIPESIGVMTSLESIDF 203 (312)
Q Consensus 133 ~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~-----~~p~~~~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~l 203 (312)
..+...+..+++|++|++++|+++. ..+..+..+++|++|+|++|.++ ..+|..+..+++|++|++
T Consensus 177 -----~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 177 -----KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp -----HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred -----HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 0011234456678888888887762 23336667778888888888774 456666777778888888
Q ss_pred CCccCCcc----CCcccc--CCCCCCeEecccCcccc----cCCCC--CCCCCCccccccCCCCCCCC
Q 047128 204 STNQLSGE----IPESMS--SLTFSNHLNLSNNNLTG----KIPSS--TQLQSFDVSSFAGNDLCGAP 259 (312)
Q Consensus 204 ~~N~l~~~----~p~~~~--~l~~L~~L~l~~N~l~~----~~~~~--~~l~~l~~~~l~~n~l~~~p 259 (312)
++|.+++. ++..+. .+++|++|++++|++++ .++.. ..+++|+.+++.+|.+.+..
T Consensus 252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 88877754 344453 37778888888887776 23322 23577777777777666544
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=4.8e-25 Score=189.61 Aligned_cols=209 Identities=18% Similarity=0.164 Sum_probs=160.2
Q ss_pred CCCCEEECcCCCCCCC----CChhHHhcCCCCcEEEccCCcccccCCcCC--CCCCCCcEEEccCCCCCcccc----hhh
Q 047128 29 TTLESLDVGENEFVGN----IPTWIGERFSRMVVLILRSNKFHGPLPTRL--CDLPFLQILDIADTNLSGAIP----NWI 98 (312)
Q Consensus 29 ~~L~~L~l~~n~l~~~----lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~ 98 (312)
..++.+.+.++.+... +...+ .+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVL--AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHH--HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhc--ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 3578888888877521 11111 35779999999999998888887 889999999999999886544 344
Q ss_pred HhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc--C--ChhhhcCCCC
Q 047128 99 NNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK--I--PLEVTNLKAL 174 (312)
Q Consensus 99 ~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~--~--p~~~~~l~~L 174 (312)
..+++|+.|++.+|.+....+.. +..+++|++|++++|++.+. . +..+..+++|
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~----------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L 199 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQ----------------------VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAI 199 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTS----------------------CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCC
T ss_pred hhccCCCEEEeeCCCcchhhHHH----------------------hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCC
Confidence 56889999999999886544322 23467899999999998642 2 2334688999
Q ss_pred CEEEccCCCCccccCh----hhcCCCCCcEEECCCccCCccCCccccCC---CCCCeEecccCcccccCCCCCCCCCCcc
Q 047128 175 HSLNFSYNSFTRRIPE----SIGVMTSLESIDFSTNQLSGEIPESMSSL---TFSNHLNLSNNNLTGKIPSSTQLQSFDV 247 (312)
Q Consensus 175 ~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~l~~N~l~~~~p~~~~~l---~~L~~L~l~~N~l~~~~~~~~~l~~l~~ 247 (312)
++|++++|+++ .++. .+..+++|++|++++|++++..|..+..+ ++|++|++++|+++..+... .++++.
T Consensus 200 ~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~ 276 (310)
T 4glp_A 200 QNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRV 276 (310)
T ss_dssp CSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSC
T ss_pred CEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh--cCCCCE
Confidence 99999999997 4444 25678999999999999998778777665 79999999999999554433 378999
Q ss_pred ccccCCCCCCCCCCCCC
Q 047128 248 SSFAGNDLCGAPIPKNC 264 (312)
Q Consensus 248 ~~l~~n~l~~~p~~~~c 264 (312)
+++++|.+.+.|....+
T Consensus 277 L~Ls~N~l~~~~~~~~l 293 (310)
T 4glp_A 277 LDLSSNRLNRAPQPDEL 293 (310)
T ss_dssp EECCSCCCCSCCCTTSC
T ss_pred EECCCCcCCCCchhhhC
Confidence 99999999987654333
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.7e-24 Score=190.21 Aligned_cols=236 Identities=14% Similarity=0.135 Sum_probs=171.3
Q ss_pred CCCcCEEECCCCccccccc----ccccCCC-CCCEEECcCCCCCCCCChhHHhcC-----CCCcEEEccCCcccccCCcC
Q 047128 4 LTSLVWLRLGKNKLSVDIL----VSLKNCT-TLESLDVGENEFVGNIPTWIGERF-----SRMVVLILRSNKFHGPLPTR 73 (312)
Q Consensus 4 l~~L~~L~L~~n~i~~~~~----~~l~~l~-~L~~L~l~~n~l~~~lp~~~~~~l-----~~L~~L~L~~n~l~~~~~~~ 73 (312)
.++|++|+|++|.+++..+ ..+.+++ +|++|++++|.+.+..+..+. .+ ++|++|++++|++++..+..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~-~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV-QILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHH-HHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHH-HHHhccCCCccEEECcCCcCChHHHHH
Confidence 3458999999999886666 6778888 899999999998855555554 43 88999999999988655443
Q ss_pred ----CCCC-CCCcEEEccCCCCCcccchhhHhh-----cccccccccccccccccCCCCccceeeeeeeeeeecCcccch
Q 047128 74 ----LCDL-PFLQILDIADTNLSGAIPNWINNL-----TGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDY 143 (312)
Q Consensus 74 ----~~~l-~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (312)
+..+ ++|++|++++|.++...+..+... .+|+.|++.+|.+..... ..+...
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~------------------~~l~~~ 161 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS------------------DELIQI 161 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH------------------HHHHHH
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH------------------HHHHHH
Confidence 3334 789999999999886666555442 588999998888763211 011122
Q ss_pred HHHhc-cccEEEcCCCcccccCChhhh----cC-CCCCEEEccCCCCccc----cChhhcC-CCCCcEEECCCccCCccC
Q 047128 144 EDILN-LVRMIDISRNNFSGKIPLEVT----NL-KALHSLNFSYNSFTRR----IPESIGV-MTSLESIDFSTNQLSGEI 212 (312)
Q Consensus 144 ~~~~~-~L~~L~ls~n~i~~~~p~~~~----~l-~~L~~L~Ls~n~l~~~----~p~~~~~-l~~L~~L~l~~N~l~~~~ 212 (312)
+...+ +|++|++++|++++..+..+. .. ++|++|++++|.+++. ++..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 23333 899999999999877765444 44 5999999999999842 4555555 459999999999998654
Q ss_pred C----ccccCCCCCCeEecccCcccccC--------CCCCCCCCCccccccCCCCCCC
Q 047128 213 P----ESMSSLTFSNHLNLSNNNLTGKI--------PSSTQLQSFDVSSFAGNDLCGA 258 (312)
Q Consensus 213 p----~~~~~l~~L~~L~l~~N~l~~~~--------~~~~~l~~l~~~~l~~n~l~~~ 258 (312)
+ ..+..+++|++|++++|.+.+.. .....+++++.+++++|.+.+.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 4 34567889999999999854322 2335677888899999976543
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=9.3e-23 Score=175.12 Aligned_cols=177 Identities=20% Similarity=0.262 Sum_probs=149.1
Q ss_pred CCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCc
Q 047128 2 GSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQ 81 (312)
Q Consensus 2 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 81 (312)
..+++|++|++++|.+++..+ +.++++|++|++++|++. .++ .+. .+++|++|++++|++++ ++ .+..+++|+
T Consensus 60 ~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~-~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~ 132 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIA-GLQSIKTLDLTSTQITD-VT-PLAGLSNLQ 132 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGT-TCTTCCEEECTTSCCCC-CG-GGTTCTTCC
T ss_pred hccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhc-CCCCCCEEECCCCCCCC-ch-hhcCCCCCC
Confidence 468999999999999985444 999999999999999998 666 444 89999999999999995 44 389999999
Q ss_pred EEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccc
Q 047128 82 ILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS 161 (312)
Q Consensus 82 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~ 161 (312)
+|++++|.+++..+ +..+++|+.|++.+|.+....+ +..+++|+.|++++|.++
T Consensus 133 ~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~------------------------l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 133 VLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP------------------------LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG------------------------GTTCTTCCEEECCSSCCC
T ss_pred EEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh------------------------hcCCCCCCEEECCCCccC
Confidence 99999999985544 8899999999999998764221 345788999999999999
Q ss_pred ccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccc
Q 047128 162 GKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESM 216 (312)
Q Consensus 162 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~ 216 (312)
+..+ +..+++|++|++++|++++.. . +..+++|+.|++++|+++ ..|..+
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~-~-l~~l~~L~~L~l~~N~i~-~~~~~~ 236 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVS-P-LANTSNLFIVTLTNQTIT-NQPVFY 236 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCG-G-GTTCTTCCEEEEEEEEEE-CCCEEC
T ss_pred cChh--hcCCCCCCEEEccCCccCccc-c-ccCCCCCCEEEccCCeee-cCCeee
Confidence 5443 889999999999999998444 3 789999999999999998 445433
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=2.4e-23 Score=180.94 Aligned_cols=232 Identities=9% Similarity=0.095 Sum_probs=170.6
Q ss_pred CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCC-CChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128 5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGN-IPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL 83 (312)
Q Consensus 5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~-lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 83 (312)
++++.|++++|.+++..+. +..+++|++|++++|.+.+. +|..+. .+++|++|++++|.+++..+..++.+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~-~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILS-QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHT-TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHh-hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 6788888888888765544 55688888999988887744 555554 78889999998888887777778888889999
Q ss_pred EccCC-CCCcc-cchhhHhhccccccccccc-ccccccCCCCccceeeeeeeeeeecCcccchHHHhc-cccEEEcCCC-
Q 047128 84 DIADT-NLSGA-IPNWINNLTGMVTSCSFTR-SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILN-LVRMIDISRN- 158 (312)
Q Consensus 84 ~l~~n-~l~~~-~~~~~~~l~~L~~l~l~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~ls~n- 158 (312)
++++| .+++. .+..+..+++|+.|++.+| .+... ..+..+..++ +|++|++++|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~---------------------~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK---------------------HVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH---------------------HHHHHHHHSCTTCCEEECCSCG
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH---------------------HHHHHHHhcccCCCEEEeCCCc
Confidence 99888 57653 5666788888888888887 65421 1234456677 8999999999
Q ss_pred -ccc-ccCChhhhcCCCCCEEEccCCC-CccccChhhcCCCCCcEEECCCcc-CCccCCccccCCCCCCeEecccCcccc
Q 047128 159 -NFS-GKIPLEVTNLKALHSLNFSYNS-FTRRIPESIGVMTSLESIDFSTNQ-LSGEIPESMSSLTFSNHLNLSNNNLTG 234 (312)
Q Consensus 159 -~i~-~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~~l~~L~~L~l~~N~l~~ 234 (312)
.++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. ++......+..+++|++|++++| ++.
T Consensus 207 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~ 285 (336)
T 2ast_B 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD 285 (336)
T ss_dssp GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred ccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence 454 3566677889999999999998 776777788889999999999995 43333335778999999999988 332
Q ss_pred cCCCCCCC-CCCccccccCCCCCCCCCCC
Q 047128 235 KIPSSTQL-QSFDVSSFAGNDLCGAPIPK 262 (312)
Q Consensus 235 ~~~~~~~l-~~l~~~~l~~n~l~~~p~~~ 262 (312)
. ....+ ..+..+++++|.+++..++.
T Consensus 286 ~--~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 286 G--TLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp T--CHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred H--HHHHHHhhCcceEEecccCccccCCc
Confidence 1 11122 23566677888887765443
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=5.9e-23 Score=169.96 Aligned_cols=197 Identities=16% Similarity=0.167 Sum_probs=165.1
Q ss_pred CCcCEEECCCCcccccccccccCCCCCCEEECcCCC-CCCCCChhHHhcCCCCcEEEccC-CcccccCCcCCCCCCCCcE
Q 047128 5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENE-FVGNIPTWIGERFSRMVVLILRS-NKFHGPLPTRLCDLPFLQI 82 (312)
Q Consensus 5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~-l~~~lp~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~ 82 (312)
++|++|++++|++++..+..|.++++|++|++++|+ ++ .++...+.++++|++|++++ |+++...+..|..+++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 379999999999997777789999999999999997 87 78776556899999999999 9999776678999999999
Q ss_pred EEccCCCCCcccchhhHhhcccc---ccccccc-ccccccCCCCccceeeeeeeeeeecCcccchHHHhcccc-EEEcCC
Q 047128 83 LDIADTNLSGAIPNWINNLTGMV---TSCSFTR-SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVR-MIDISR 157 (312)
Q Consensus 83 L~l~~n~l~~~~~~~~~~l~~L~---~l~l~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~ls~ 157 (312)
|++++|.+++ +|. +..+++|+ .+++.+| .+....+ ..+..+++|+ +|++++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~----------------------~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPV----------------------NAFQGLCNETLTLKLYN 165 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECT----------------------TTTTTTBSSEEEEECCS
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCc----------------------ccccchhcceeEEEcCC
Confidence 9999999985 665 88888888 9999988 6654332 2344578899 999999
Q ss_pred CcccccCChhhhcCCCCCEEEccCCC-CccccChhhcCC-CCCcEEECCCccCCccCCccccCCCCCCeEecccC
Q 047128 158 NNFSGKIPLEVTNLKALHSLNFSYNS-FTRRIPESIGVM-TSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNN 230 (312)
Q Consensus 158 n~i~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N 230 (312)
|+++...+..+.. ++|++|++++|+ +++..+..+..+ ++|++|++++|+++ .+|.. .+++|+.|+++++
T Consensus 166 n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 166 NGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred CCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 9999544445555 899999999995 986666778888 99999999999999 55553 6788999999876
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.3e-23 Score=186.08 Aligned_cols=219 Identities=13% Similarity=0.216 Sum_probs=171.0
Q ss_pred CCCCCCcCEEECCCCc---ccccccccc-------cCCCCCCEEECcCCCCCC----CCChhHHhcCCCCcEEEccCCcc
Q 047128 1 MGSLTSLVWLRLGKNK---LSVDILVSL-------KNCTTLESLDVGENEFVG----NIPTWIGERFSRMVVLILRSNKF 66 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~---i~~~~~~~l-------~~l~~L~~L~l~~n~l~~----~lp~~~~~~l~~L~~L~L~~n~l 66 (312)
|.++++|++|+|++|. +++..|..+ ..+++|++|++++|.+.+ .+|..+. .+++|++|++++|.+
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS-KHTPLEHLYLHNNGL 134 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHH-HCTTCCEEECCSSCC
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHH-hCCCCCEEECcCCCC
Confidence 4578999999999974 444555444 789999999999999995 2666665 799999999999999
Q ss_pred cccCCcCCC----CC---------CCCcEEEccCCCCC-cccc---hhhHhhcccccccccccccccccCCCCccceeee
Q 047128 67 HGPLPTRLC----DL---------PFLQILDIADTNLS-GAIP---NWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILV 129 (312)
Q Consensus 67 ~~~~~~~~~----~l---------~~L~~L~l~~n~l~-~~~~---~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~ 129 (312)
+...+..+. .+ ++|++|++++|+++ ...+ ..+..+++|+.|++.+|.+...--
T Consensus 135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~---------- 204 (386)
T 2ca6_A 135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI---------- 204 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHH----------
T ss_pred CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHH----------
Confidence 744333333 33 89999999999997 3444 467789999999999998762100
Q ss_pred eeeeeeecCcccchHHHhccccEEEcCCCccc----ccCChhhhcCCCCCEEEccCCCCccc----cChhhc--CCCCCc
Q 047128 130 EKASVVSKGEMVDYEDILNLVRMIDISRNNFS----GKIPLEVTNLKALHSLNFSYNSFTRR----IPESIG--VMTSLE 199 (312)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~----~~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~--~l~~L~ 199 (312)
....+..+..+++|++|++++|.++ ..+|..+..+++|++|++++|.+++. ++..+. .+++|+
T Consensus 205 -------~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~ 277 (386)
T 2ca6_A 205 -------EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ 277 (386)
T ss_dssp -------HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCC
T ss_pred -------HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeE
Confidence 0001113445788999999999996 56788889999999999999999855 456663 389999
Q ss_pred EEECCCccCCc----cCCccc-cCCCCCCeEecccCcccccCC
Q 047128 200 SIDFSTNQLSG----EIPESM-SSLTFSNHLNLSNNNLTGKIP 237 (312)
Q Consensus 200 ~L~l~~N~l~~----~~p~~~-~~l~~L~~L~l~~N~l~~~~~ 237 (312)
+|++++|.+++ .+|..+ ..+++|++|++++|++++..+
T Consensus 278 ~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 278 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp EEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred EEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 99999999996 377776 568999999999999997653
No 83
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.88 E-value=3.7e-22 Score=162.99 Aligned_cols=156 Identities=15% Similarity=0.190 Sum_probs=133.6
Q ss_pred CEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccccccccc
Q 047128 32 ESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFT 111 (312)
Q Consensus 32 ~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~ 111 (312)
+.++.+++.++ .+|..+. ++++.|++++|++++..+..|..+++|++|++++|.+++..|..|..+++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~-------- 81 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS-------- 81 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSS--------
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcC--------
Confidence 67889999998 8887653 78999999999999777778899999999999999998776777665554
Q ss_pred cccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChh
Q 047128 112 RSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPES 191 (312)
Q Consensus 112 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 191 (312)
|++|++++|.++...+..|..+++|++|+|++|++++..|..
T Consensus 82 --------------------------------------L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~ 123 (220)
T 2v9t_B 82 --------------------------------------LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDA 123 (220)
T ss_dssp --------------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred --------------------------------------CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHH
Confidence 778999999999666667888999999999999999777888
Q ss_pred hcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCC
Q 047128 192 IGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIP 237 (312)
Q Consensus 192 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~ 237 (312)
|..+++|+.|++++|++++..+..|..+++|++|++++|++.+.+.
T Consensus 124 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred cCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 9999999999999999997777788899999999999999987643
No 84
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.88 E-value=2.7e-22 Score=163.80 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=126.3
Q ss_pred CEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCC-cCCCCCCCCcEEEccCCCCCcccchhhHhhccccccccc
Q 047128 32 ESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLP-TRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSF 110 (312)
Q Consensus 32 ~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 110 (312)
+.+++++|.++ .+|..+. ..++.|++++|++++..+ ..|..+++|++|++++|.+++..+..|..+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~------- 82 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG------- 82 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT-------
T ss_pred CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC-------
Confidence 57888888888 7887653 456788888888886544 34778888888888888888655555554444
Q ss_pred ccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccCh
Q 047128 111 TRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPE 190 (312)
Q Consensus 111 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~ 190 (312)
|++|++++|.+++..+..|..+++|++|++++|++++..|.
T Consensus 83 ---------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 123 (220)
T 2v70_A 83 ---------------------------------------VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND 123 (220)
T ss_dssp ---------------------------------------CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT
T ss_pred ---------------------------------------CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh
Confidence 77788888888877777788899999999999999877788
Q ss_pred hhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCC
Q 047128 191 SIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIP 237 (312)
Q Consensus 191 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~ 237 (312)
.+..+++|+.|++++|++++..|..|..+++|++|++++|+++|.++
T Consensus 124 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 124 SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 88889999999999999997778888899999999999999988665
No 85
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=1.4e-21 Score=176.50 Aligned_cols=78 Identities=26% Similarity=0.457 Sum_probs=51.2
Q ss_pred CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128 5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD 84 (312)
Q Consensus 5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 84 (312)
++|++|++++|.+++ +| .+.++++|++|++++|+++ .+|.. ..+|++|++++|++++ +| .+..+++|++|+
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence 467778888877774 55 4777777777777777777 46543 3466666776666663 44 456666666666
Q ss_pred ccCCCCC
Q 047128 85 IADTNLS 91 (312)
Q Consensus 85 l~~n~l~ 91 (312)
+++|.++
T Consensus 202 l~~N~l~ 208 (454)
T 1jl5_A 202 ADNNSLK 208 (454)
T ss_dssp CCSSCCS
T ss_pred CCCCcCC
Confidence 6665554
No 86
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=6.1e-22 Score=160.31 Aligned_cols=175 Identities=16% Similarity=0.153 Sum_probs=118.7
Q ss_pred CEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccC
Q 047128 8 VWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIAD 87 (312)
Q Consensus 8 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 87 (312)
+.++.+++.++ .+|..+ .++|++|++++|+++ .++...+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 45666777666 344333 346777777777777 56655444677777777777777755555567777777777777
Q ss_pred CCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChh
Q 047128 88 TNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLE 167 (312)
Q Consensus 88 n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~ 167 (312)
|.+++..+..+..++ +|++|++++|++++..+..
T Consensus 86 n~l~~~~~~~~~~l~----------------------------------------------~L~~L~L~~N~l~~~~~~~ 119 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLT----------------------------------------------QLKELALNTNQLQSLPDGV 119 (208)
T ss_dssp SCCCCCCTTTTTTCT----------------------------------------------TCCEEECCSSCCCCCCTTT
T ss_pred CcCCccCHhHhcCcc----------------------------------------------CCCEEEcCCCcCcccCHhH
Confidence 777644443333333 3677777777777666666
Q ss_pred hhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC
Q 047128 168 VTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS 239 (312)
Q Consensus 168 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~ 239 (312)
+..+++|++|++++|++++..+..+..+++|++|++++|.+.+ .++.|+.|+++.|+++|.+|..
T Consensus 120 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 120 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeecc
Confidence 7777888888888888775555556777788888888886653 3456777778888887766643
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=1.9e-22 Score=176.34 Aligned_cols=222 Identities=16% Similarity=0.098 Sum_probs=117.3
Q ss_pred CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcE-EEccCCcccccCCcCCCCCCCCcEEE
Q 047128 6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVV-LILRSNKFHGPLPTRLCDLPFLQILD 84 (312)
Q Consensus 6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~ 84 (312)
++++|+|++|+|+...+.+|.++++|++|++++|++.+.+|...+.+++++++ +.++.|+++...|..|..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 34455555555543333344455555555555554433444443334444332 33334444444344444455555555
Q ss_pred ccCCCCCcccchhhHhhcccccccccc-cccccccCCCCccceeeeeeeeeeecCcccchHHH-hccccEEEcCCCcccc
Q 047128 85 IADTNLSGAIPNWINNLTGMVTSCSFT-RSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDI-LNLVRMIDISRNNFSG 162 (312)
Q Consensus 85 l~~n~l~~~~~~~~~~l~~L~~l~l~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~ls~n~i~~ 162 (312)
+++|++....+..+.....+..+++.. +.+.... ...+.. ...++.|++++|+++.
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~----------------------~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE----------------------RNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC----------------------TTSSTTSBSSCEEEECCSSCCCE
T ss_pred ccccccccCCchhhcccchhhhhhhcccccccccc----------------------ccchhhcchhhhhhccccccccC
Confidence 555544433333333333333333322 1121111 111122 2357889999999985
Q ss_pred cCChhhhcCCCCCEEEccC-CCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCC
Q 047128 163 KIPLEVTNLKALHSLNFSY-NSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQ 241 (312)
Q Consensus 163 ~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 241 (312)
..+ ......+|+++++++ |.++...++.|..+++|++|++++|+|+ .+|.. .+.+|+.|...++.--..+|....
T Consensus 169 i~~-~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~ 244 (350)
T 4ay9_X 169 IHN-SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPTLEK 244 (350)
T ss_dssp ECT-TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCCTTT
T ss_pred CCh-hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCCchh
Confidence 444 444567888899875 5676333456788899999999999998 45542 244566665554433345566667
Q ss_pred CCCCccccccCC
Q 047128 242 LQSFDVSSFAGN 253 (312)
Q Consensus 242 l~~l~~~~l~~n 253 (312)
+.+|+.+++.++
T Consensus 245 l~~L~~l~l~~~ 256 (350)
T 4ay9_X 245 LVALMEASLTYP 256 (350)
T ss_dssp CCSCCEEECSCH
T ss_pred CcChhhCcCCCC
Confidence 777777766543
No 88
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=2.5e-22 Score=181.33 Aligned_cols=218 Identities=20% Similarity=0.211 Sum_probs=103.9
Q ss_pred CEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccC
Q 047128 8 VWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIAD 87 (312)
Q Consensus 8 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 87 (312)
++|++++|.+++ +|.. .++|++|++++|.++ .+|. .+++|++|++++|++++ +|.. .++|++|++++
T Consensus 74 ~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~-~lp~----~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~ 140 (454)
T 1jl5_A 74 HELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSN 140 (454)
T ss_dssp SEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCS
T ss_pred CEEEecCCcccc-CCCC---cCCCCEEEccCCcCC-cccc----ccCCCcEEECCCCccCc-ccCC---CCCCCEEECcC
Confidence 445555555442 2221 245555555555555 3443 23556666666666552 2221 15677777777
Q ss_pred CCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChh
Q 047128 88 TNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLE 167 (312)
Q Consensus 88 n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~ 167 (312)
|.+++ +| .+..+++|+.+++.+|.+...... .. .........+...+ .+ .+..+++|++|++++|.+++ +|..
T Consensus 141 n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~-~~-~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~ 213 (454)
T 1jl5_A 141 NQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPDL-PP-SLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL 213 (454)
T ss_dssp SCCSS-CC-CCTTCTTCCEEECCSSCCSCCCCC-CT-TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC
T ss_pred CCCCC-Cc-ccCCCCCCCEEECCCCcCcccCCC-cc-cccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC
Confidence 77764 55 467777777777777766542211 10 11111110111111 11 23344555555555555553 2221
Q ss_pred hhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCcc
Q 047128 168 VTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDV 247 (312)
Q Consensus 168 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~ 247 (312)
.++|++|++++|.++ .+|. ++.+++|++|++++|+++ .+|+. +++|++|++++|++++.++ ...+++.
T Consensus 214 ---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~N~l~~l~~---~~~~L~~ 281 (454)
T 1jl5_A 214 ---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLTDLPE---LPQSLTF 281 (454)
T ss_dssp ---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS-SCCSC---CTTCCEEECCSSCCSCCCC---CCTTCCE
T ss_pred ---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCC-ccccc---ccccCEEECCCCcccccCc---ccCcCCE
Confidence 135555555555554 4443 455555555555555555 23332 2455555555555554221 1244555
Q ss_pred ccccCCCCCC
Q 047128 248 SSFAGNDLCG 257 (312)
Q Consensus 248 ~~l~~n~l~~ 257 (312)
+++++|.+.+
T Consensus 282 L~ls~N~l~~ 291 (454)
T 1jl5_A 282 LDVSENIFSG 291 (454)
T ss_dssp EECCSSCCSE
T ss_pred EECcCCccCc
Confidence 5555555444
No 89
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=3.3e-22 Score=161.87 Aligned_cols=164 Identities=17% Similarity=0.189 Sum_probs=140.6
Q ss_pred CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128 4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL 83 (312)
Q Consensus 4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 83 (312)
.++|++|++++|.+++..+..|.++++|++|++++|+++ .+|...+..+++|++|++++|++++..+..+..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 467999999999999777777899999999999999999 7887766689999999999999996666668999999999
Q ss_pred EccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc
Q 047128 84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK 163 (312)
Q Consensus 84 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~ 163 (312)
++++|.+++..+..+..++ +|++|++++|++++.
T Consensus 106 ~L~~N~l~~~~~~~~~~l~----------------------------------------------~L~~L~l~~N~l~~~ 139 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLT----------------------------------------------QLKDLRLYQNQLKSV 139 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCT----------------------------------------------TCCEEECCSSCCSCC
T ss_pred EcCCCcCcccCHhHhccCC----------------------------------------------cCCEEECCCCcccee
Confidence 9999999865554454444 488899999999977
Q ss_pred CChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCC
Q 047128 164 IPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTF 221 (312)
Q Consensus 164 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~ 221 (312)
.+..+..+++|++|++++|.+.+ .+++|+.|+++.|++++.+|+.++.++.
T Consensus 140 ~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 140 PDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 77778999999999999998763 4568999999999999999998876654
No 90
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=1.5e-21 Score=181.73 Aligned_cols=221 Identities=20% Similarity=0.210 Sum_probs=128.0
Q ss_pred CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128 5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD 84 (312)
Q Consensus 5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 84 (312)
++|++|++++|.++ .+|. .+++|++|++++|+++ .+|. .+++|++|++++|++++ +|. .+++|++|+
T Consensus 61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~ 127 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTH-LPA---LPSGLCKLW 127 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCC-CCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCC-CCC---CCCCcCEEE
Confidence 45666666666666 3333 4566677777777766 5665 45667777777777663 443 456677777
Q ss_pred ccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccC
Q 047128 85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI 164 (312)
Q Consensus 85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~ 164 (312)
+++|.++. +|.. +++|+.|++.+|.+......... ...+....+.... ++ ..+++|+.|++++|.+++ +
T Consensus 128 L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~~~~~--L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l 196 (622)
T 3g06_A 128 IFGNQLTS-LPVL---PPGLQELSVSDNQLASLPALPSE--LCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-L 196 (622)
T ss_dssp CCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCCCCTT--CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-C
T ss_pred CCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCCccCC--CCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-C
Confidence 77777663 3432 36777777777776653221111 1111000000000 00 223445555555555553 2
Q ss_pred Chhh-----------------hcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEec
Q 047128 165 PLEV-----------------TNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNL 227 (312)
Q Consensus 165 p~~~-----------------~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l 227 (312)
|..+ ..+++|++|++++|+++ .+| ..+++|+.|++++|+++ .+|. .+++|+.|++
T Consensus 197 ~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~L 268 (622)
T 3g06_A 197 PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSV 268 (622)
T ss_dssp CCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred CCccchhhEEECcCCcccccCCCCCCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeC
Confidence 2111 01256777777777776 355 34577788888888777 5555 4577888888
Q ss_pred ccCcccccCCCCCCCCCCccccccCCCCCC
Q 047128 228 SNNNLTGKIPSSTQLQSFDVSSFAGNDLCG 257 (312)
Q Consensus 228 ~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~ 257 (312)
++|+++..++....+++++.+++.+|.+.+
T Consensus 269 s~N~L~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 269 YRNQLTRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CSSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred CCCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence 888888554445667778888888887664
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.87 E-value=1.5e-21 Score=166.16 Aligned_cols=172 Identities=15% Similarity=0.245 Sum_probs=115.7
Q ss_pred CCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhccccc
Q 047128 27 NCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT 106 (312)
Q Consensus 27 ~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 106 (312)
.+++|++|++++|.+. .++. +. .+++|++|++++|++++.. . +..+++|++|++++|.+++ .+ .+..+++|+.
T Consensus 44 ~l~~L~~L~l~~~~i~-~~~~-~~-~l~~L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHTCCEEECTTSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hcCcccEEEccCCCcc-cChh-Hh-cCCCCCEEEccCCccCCCc-c-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 4555566666666555 4443 22 4566666666666655322 2 5555666666666665553 22 2555555555
Q ss_pred ccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCcc
Q 047128 107 SCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTR 186 (312)
Q Consensus 107 l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~ 186 (312)
|++.+|.+... ..+..+++|++|++++|++++. ..+..+++|++|++++|++++
T Consensus 117 L~L~~n~i~~~------------------------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 117 LSLEHNGISDI------------------------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp EECTTSCCCCC------------------------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred EECCCCcCCCC------------------------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence 55555554421 1123356789999999999854 578899999999999999985
Q ss_pred ccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCccccc
Q 047128 187 RIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGK 235 (312)
Q Consensus 187 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 235 (312)
..| +..+++|+.|++++|.+++ ++. +..+++|+.|++++|+++..
T Consensus 171 ~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 171 IVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEECC
T ss_pred chh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCcccCC
Confidence 444 7889999999999999984 554 78899999999999998763
No 92
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.87 E-value=2.9e-22 Score=175.85 Aligned_cols=178 Identities=21% Similarity=0.230 Sum_probs=112.2
Q ss_pred EEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHh-cCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccC
Q 047128 9 WLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGE-RFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIAD 87 (312)
Q Consensus 9 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 87 (312)
.++++++.++ .+|..+. +.+++|++++|+++ .++...+. .+++|+.|++++|++++..+..|..+++|++|++++
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4455555554 2333321 23455555555555 33333332 445555555555555544444455555555555555
Q ss_pred CCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChh
Q 047128 88 TNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLE 167 (312)
Q Consensus 88 n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~ 167 (312)
|+++...+..|. .+++|++|++++|++++..|..
T Consensus 98 N~l~~~~~~~~~----------------------------------------------~l~~L~~L~L~~N~i~~~~~~~ 131 (361)
T 2xot_A 98 NHLHTLDEFLFS----------------------------------------------DLQALEVLLLYNNHIVVVDRNA 131 (361)
T ss_dssp SCCCEECTTTTT----------------------------------------------TCTTCCEEECCSSCCCEECTTT
T ss_pred CcCCcCCHHHhC----------------------------------------------CCcCCCEEECCCCcccEECHHH
Confidence 555433332332 3455888999999999888889
Q ss_pred hhcCCCCCEEEccCCCCccccChhh---cCCCCCcEEECCCccCCccCCccccCCCC--CCeEecccCcccccC
Q 047128 168 VTNLKALHSLNFSYNSFTRRIPESI---GVMTSLESIDFSTNQLSGEIPESMSSLTF--SNHLNLSNNNLTGKI 236 (312)
Q Consensus 168 ~~~l~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~l~~N~l~~~~p~~~~~l~~--L~~L~l~~N~l~~~~ 236 (312)
|..+++|++|+|++|++++..+..+ ..+++|+.|++++|++++..+..+..++. ++.|++++|++.|.+
T Consensus 132 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 132 FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp TTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred hCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence 9999999999999999984434444 56899999999999999555566777776 488999999998754
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=3.7e-23 Score=179.71 Aligned_cols=222 Identities=14% Similarity=0.112 Sum_probs=181.5
Q ss_pred CcCEEECCCCcccccccccccCC--CCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCccccc-CCcCCCCCCCCcE
Q 047128 6 SLVWLRLGKNKLSVDILVSLKNC--TTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGP-LPTRLCDLPFLQI 82 (312)
Q Consensus 6 ~L~~L~L~~n~i~~~~~~~l~~l--~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 82 (312)
.++.++++++.+. +..+..+ +.++++++++|.+.+..+ .++ .+++|++|++++|.+++. ++..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA-EHF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCC-SCC-CCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccch-hhc-cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 4789999999886 3455566 889999999999995544 455 799999999999998855 7777889999999
Q ss_pred EEccCCCCCcccchhhHhhccccccccccc-ccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCC-cc
Q 047128 83 LDIADTNLSGAIPNWINNLTGMVTSCSFTR-SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRN-NF 160 (312)
Q Consensus 83 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n-~i 160 (312)
|++++|.+++..+..+..+++|+.|++.+| .+.. ...+..+..+++|++|++++| .+
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~---------------------~~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE---------------------FALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH---------------------HHHHHHHHHCTTCCEEECCCCTTC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH---------------------HHHHHHHhcCCCCCEEcCCCCCCc
Confidence 999999998888889999999999999998 4432 113445667899999999999 89
Q ss_pred ccc-CChhhhcCC-CCCEEEccCC--CCc-cccChhhcCCCCCcEEECCCcc-CCccCCccccCCCCCCeEecccCc-cc
Q 047128 161 SGK-IPLEVTNLK-ALHSLNFSYN--SFT-RRIPESIGVMTSLESIDFSTNQ-LSGEIPESMSSLTFSNHLNLSNNN-LT 233 (312)
Q Consensus 161 ~~~-~p~~~~~l~-~L~~L~Ls~n--~l~-~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~~l~~L~~L~l~~N~-l~ 233 (312)
++. .+..+..++ +|++|++++| .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|++++|. ++
T Consensus 182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence 864 567788999 9999999999 455 4567777889999999999999 777778889999999999999995 32
Q ss_pred cc-CCCCCCCCCCccccccCC
Q 047128 234 GK-IPSSTQLQSFDVSSFAGN 253 (312)
Q Consensus 234 ~~-~~~~~~l~~l~~~~l~~n 253 (312)
.. +.....+++|+.+++.+|
T Consensus 262 ~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 262 PETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHHHHhcCCCCCEEeccCc
Confidence 21 112356788999999888
No 94
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.87 E-value=1.8e-21 Score=159.93 Aligned_cols=157 Identities=20% Similarity=0.236 Sum_probs=135.2
Q ss_pred CCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhccccccccc
Q 047128 31 LESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSF 110 (312)
Q Consensus 31 L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 110 (312)
.+.++.++++++ .+|..+. ++|+.|++++|++++..|..|..+++|++|++++|+++...+..|..++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-------- 88 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT-------- 88 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT--------
T ss_pred CCEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC--------
Confidence 578899999998 8998653 8899999999999987788899999999999999999755444454444
Q ss_pred ccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccCh
Q 047128 111 TRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPE 190 (312)
Q Consensus 111 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~ 190 (312)
+|++|++++|++++..+..|..+++|++|++++|+++ .+|.
T Consensus 89 --------------------------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 129 (229)
T 3e6j_A 89 --------------------------------------QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPR 129 (229)
T ss_dssp --------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCT
T ss_pred --------------------------------------CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCc
Confidence 4888999999999777777899999999999999998 8888
Q ss_pred hhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCC
Q 047128 191 SIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPS 238 (312)
Q Consensus 191 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~ 238 (312)
.+..+++|+.|++++|++++..+..+..+++|+.|++++|+++|.++.
T Consensus 130 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 130 GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 889999999999999999966667788999999999999999987653
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=1.5e-21 Score=179.89 Aligned_cols=182 Identities=20% Similarity=0.289 Sum_probs=152.8
Q ss_pred CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128 5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD 84 (312)
Q Consensus 5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 84 (312)
.+|+.|++++|.+++ +|..+ .++|++|++++|.++ .+| . .+++|+.|++++|++++ +|. +.. +|++|+
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip-~---~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP-E---LPASLEYLDACDNRLST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC-C---CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc-c---ccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence 379999999999986 66655 378999999999999 899 2 58999999999999996 776 665 999999
Q ss_pred ccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccC
Q 047128 85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI 164 (312)
Q Consensus 85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~ 164 (312)
+++|.+++ +|. .+++|+.|++.+|.+..... .+++|++|++++|.+++ +
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~--------------------------~l~~L~~L~Ls~N~L~~-l 175 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLTMLPE--------------------------LPTSLEVLSVRNNQLTF-L 175 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC--------------------------CCTTCCEEECCSSCCSC-C
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccCcCCC--------------------------cCCCcCEEECCCCCCCC-c
Confidence 99999996 565 68999999999998875211 24679999999999996 6
Q ss_pred ChhhhcCCCCCEEEccCCCCccccChhhcCCCCC-------cEEECCCccCCccCCccccCCCCCCeEecccCcccccCC
Q 047128 165 PLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSL-------ESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIP 237 (312)
Q Consensus 165 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~ 237 (312)
|. +. ++|+.|++++|+|+ .+|. +.. +| +.|++++|+|+ .+|..+..+++|+.|++++|++++.+|
T Consensus 176 p~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 176 PE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred ch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 66 55 99999999999998 7777 543 77 99999999999 688888889999999999999987554
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=9.7e-23 Score=178.98 Aligned_cols=230 Identities=16% Similarity=0.067 Sum_probs=174.8
Q ss_pred EEECCCCcccccccccccCCCCCCEEECcCCCCCCCCCh----hHHhcCC-CCcEEEccCCcccccCCcCCCCC-----C
Q 047128 9 WLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPT----WIGERFS-RMVVLILRSNKFHGPLPTRLCDL-----P 78 (312)
Q Consensus 9 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~ 78 (312)
.+.+++|.+++.+|..+...++|++|++++|.++ ..+. ..+..++ +|++|++++|+++...+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 4688999999888888777788999999999999 5553 3334788 99999999999997666666654 8
Q ss_pred CCcEEEccCCCCCcccchhhHhh-----cccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHH-hccccE
Q 047128 79 FLQILDIADTNLSGAIPNWINNL-----TGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDI-LNLVRM 152 (312)
Q Consensus 79 ~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ 152 (312)
+|++|++++|.+++..+..+... ++|+.|++.+|.+....... +...+.. .++|++
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~------------------l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE------------------FKQAFSNLPASITS 142 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH------------------HHHHHTTSCTTCCE
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH------------------HHHHHHhCCCceeE
Confidence 99999999999987777765554 89999999999986432100 1111222 258999
Q ss_pred EEcCCCcccccCCh----hhhcCC-CCCEEEccCCCCccccChhh----cCC-CCCcEEECCCccCCcc----CCccccC
Q 047128 153 IDISRNNFSGKIPL----EVTNLK-ALHSLNFSYNSFTRRIPESI----GVM-TSLESIDFSTNQLSGE----IPESMSS 218 (312)
Q Consensus 153 L~ls~n~i~~~~p~----~~~~l~-~L~~L~Ls~n~l~~~~p~~~----~~l-~~L~~L~l~~N~l~~~----~p~~~~~ 218 (312)
|++++|.+++..+. .+...+ +|++|++++|++++..+..+ ... ++|++|++++|.+++. ++..+..
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 99999999965443 445565 99999999999986665443 445 5999999999999953 4445554
Q ss_pred -CCCCCeEecccCcccccCC-----CCCCCCCCccccccCCCCCC
Q 047128 219 -LTFSNHLNLSNNNLTGKIP-----SSTQLQSFDVSSFAGNDLCG 257 (312)
Q Consensus 219 -l~~L~~L~l~~N~l~~~~~-----~~~~l~~l~~~~l~~n~l~~ 257 (312)
.++|++|++++|++++..+ ....+.+++.+++++|.+.+
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~ 267 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKN 267 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTT
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccc
Confidence 4699999999999986433 12456788899999886443
No 97
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=2e-23 Score=189.07 Aligned_cols=255 Identities=15% Similarity=0.086 Sum_probs=163.3
Q ss_pred CCCCcCEEECCCCcccc----cccccccCCCCCCEEECcCCCCCCCCChhHHhcCC----CCcEEEccCCcccc----cC
Q 047128 3 SLTSLVWLRLGKNKLSV----DILVSLKNCTTLESLDVGENEFVGNIPTWIGERFS----RMVVLILRSNKFHG----PL 70 (312)
Q Consensus 3 ~l~~L~~L~L~~n~i~~----~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~----~L~~L~L~~n~l~~----~~ 70 (312)
.+++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..++..++ +|++|++++|+++. .+
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 46788888888888874 34566777888888888888887444555555566 68888988888873 44
Q ss_pred CcCCCCCCCCcEEEccCCCCCcccchhhHh-----hcccccccccccccccccCCCCccc---eeeeeeeeeee---cCc
Q 047128 71 PTRLCDLPFLQILDIADTNLSGAIPNWINN-----LTGMVTSCSFTRSVQQYLPLPIDVG---VILVEKASVVS---KGE 139 (312)
Q Consensus 71 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~l~l~~n~~~~~~~~~~~~~---~~~~~~~~~~~---~~~ 139 (312)
+..+..+++|++|++++|.++...+..+.. .++|+.|++.+|.+.......+... ......+.... ...
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 677888888888888888887554544433 3468888888887664221111000 00011111110 000
Q ss_pred -ccchHH----HhccccEEEcCCCccccc----CChhhhcCCCCCEEEccCCCCcccc-----ChhhcCCCCCcEEECCC
Q 047128 140 -MVDYED----ILNLVRMIDISRNNFSGK----IPLEVTNLKALHSLNFSYNSFTRRI-----PESIGVMTSLESIDFST 205 (312)
Q Consensus 140 -~~~~~~----~~~~L~~L~ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~-----p~~~~~l~~L~~L~l~~ 205 (312)
...... ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.. +..+..+++|++|++++
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence 111111 134788888888888753 4566677888888888888876432 22223577888888888
Q ss_pred ccCCcc----CCccccCCCCCCeEecccCcccccCCCC------CCCCCCccccccCCCCCC
Q 047128 206 NQLSGE----IPESMSSLTFSNHLNLSNNNLTGKIPSS------TQLQSFDVSSFAGNDLCG 257 (312)
Q Consensus 206 N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~~~~------~~l~~l~~~~l~~n~l~~ 257 (312)
|.+++. ++..+..+++|++|++++|++++..+.. ....+++.+++++|.+.+
T Consensus 266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 327 (461)
T 1z7x_W 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch
Confidence 888854 5666667888888888888876421110 122467788888887664
No 98
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=7.6e-21 Score=177.10 Aligned_cols=206 Identities=22% Similarity=0.290 Sum_probs=143.9
Q ss_pred CCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcE
Q 047128 3 SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQI 82 (312)
Q Consensus 3 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 82 (312)
.+++|++|+|++|+++. +|. .+++|++|++++|.++ .+|. .+++|+.|++++|+++ .+|.. +++|++
T Consensus 79 ~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~-~lp~~---l~~L~~ 145 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLT-SLPVL---PPGLQE 145 (622)
T ss_dssp CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEEECCSSCCS-CCCCC---CTTCCE
T ss_pred cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEEECCCCCCC-cCCCC---CCCCCE
Confidence 35788999999999874 554 6788888888888888 6666 3677888888888777 35543 367777
Q ss_pred EEccCCCCCcccchhh---Hh--------------hcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHH
Q 047128 83 LDIADTNLSGAIPNWI---NN--------------LTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYED 145 (312)
Q Consensus 83 L~l~~n~l~~~~~~~~---~~--------------l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (312)
|++++|.+++ +|..+ .. +++|+.|++.+|.+......... ...+... ...+.....
T Consensus 146 L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~--L~~L~L~----~N~l~~l~~ 218 (622)
T 3g06_A 146 LSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSE--LYKLWAY----NNRLTSLPA 218 (622)
T ss_dssp EECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTT--CCEEECC----SSCCSSCCC
T ss_pred EECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCccch--hhEEECc----CCcccccCC
Confidence 7777777763 23221 11 25566666666666543221111 1111000 011111112
Q ss_pred HhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeE
Q 047128 146 ILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHL 225 (312)
Q Consensus 146 ~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L 225 (312)
.+++|+.|++++|.+++ +| ..+++|+.|++++|+++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.|
T Consensus 219 ~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 219 LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTV 289 (622)
T ss_dssp CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEE
T ss_pred CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEE
Confidence 34789999999999995 55 45689999999999998 6666 5689999999999999 789899999999999
Q ss_pred ecccCcccccCC
Q 047128 226 NLSNNNLTGKIP 237 (312)
Q Consensus 226 ~l~~N~l~~~~~ 237 (312)
++++|++++..+
T Consensus 290 ~L~~N~l~~~~~ 301 (622)
T 3g06_A 290 NLEGNPLSERTL 301 (622)
T ss_dssp ECCSCCCCHHHH
T ss_pred EecCCCCCCcCH
Confidence 999999987654
No 99
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=1.9e-23 Score=189.15 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=63.3
Q ss_pred CcCEEECCCCcccc----cccccccCCCCCCEEECcCCCCCCCCChhHHh----cCCCCcEEEccCCcccccC----CcC
Q 047128 6 SLVWLRLGKNKLSV----DILVSLKNCTTLESLDVGENEFVGNIPTWIGE----RFSRMVVLILRSNKFHGPL----PTR 73 (312)
Q Consensus 6 ~L~~L~L~~n~i~~----~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~----~l~~L~~L~L~~n~l~~~~----~~~ 73 (312)
+|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+.. ..++|++|++++|+++... +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 68888888888763 44677777888888888888776333333322 2345777777777666422 333
Q ss_pred CCCCCCCcEEEccCCCCCcccchhhHh-----hcccccccccccccc
Q 047128 74 LCDLPFLQILDIADTNLSGAIPNWINN-----LTGMVTSCSFTRSVQ 115 (312)
Q Consensus 74 ~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~l~l~~n~~~ 115 (312)
+..+++|++|++++|.+....+..+.. .+.|+.|++.+|.+.
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence 444556666666666554333322221 235555555555444
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.86 E-value=6.4e-21 Score=155.64 Aligned_cols=157 Identities=14% Similarity=0.143 Sum_probs=134.2
Q ss_pred cCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEcc
Q 047128 7 LVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIA 86 (312)
Q Consensus 7 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 86 (312)
-+.+++++|.++ .+|..+. +.+++|++++|.+++..|...+..+++|+.|++++|++++..+..|..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 368999999998 4666553 4578999999999944455555589999999999999998777789999999999999
Q ss_pred CCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCCh
Q 047128 87 DTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL 166 (312)
Q Consensus 87 ~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~ 166 (312)
+|.+++..+..|..+++ |++|++++|++++..|.
T Consensus 90 ~N~l~~~~~~~~~~l~~----------------------------------------------L~~L~Ls~N~l~~~~~~ 123 (220)
T 2v70_A 90 SNRLENVQHKMFKGLES----------------------------------------------LKTLMLRSNRITCVGND 123 (220)
T ss_dssp SSCCCCCCGGGGTTCSS----------------------------------------------CCEEECTTSCCCCBCTT
T ss_pred CCccCccCHhHhcCCcC----------------------------------------------CCEEECCCCcCCeECHh
Confidence 99999777766665554 88899999999988888
Q ss_pred hhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccC
Q 047128 167 EVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEI 212 (312)
Q Consensus 167 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 212 (312)
.|..+++|++|++++|++++..|..+..+++|+.|++++|.+....
T Consensus 124 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 124 SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 9999999999999999999777889999999999999999988543
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=1.5e-21 Score=171.30 Aligned_cols=175 Identities=21% Similarity=0.174 Sum_probs=142.5
Q ss_pred CCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCC-CCCCCcEEEccCCCCCcccchhhHhhcccccccc
Q 047128 31 LESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLC-DLPFLQILDIADTNLSGAIPNWINNLTGMVTSCS 109 (312)
Q Consensus 31 L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l 109 (312)
-+.++++++.++ .+|..+. ..++.|++++|++++..+..+. .+++|++|++++|+++...+..|..+++
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~------ 89 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN------ 89 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTT------
T ss_pred CCEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCC------
Confidence 368999999999 8998754 5689999999999977777777 8999999999999998666666655544
Q ss_pred cccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccC
Q 047128 110 FTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIP 189 (312)
Q Consensus 110 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 189 (312)
|++|++++|+++...+..|..+++|++|+|++|++++..|
T Consensus 90 ----------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 129 (361)
T 2xot_A 90 ----------------------------------------LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR 129 (361)
T ss_dssp ----------------------------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred ----------------------------------------CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH
Confidence 8889999999998778889999999999999999997778
Q ss_pred hhhcCCCCCcEEECCCccCCccCCccc---cCCCCCCeEecccCcccccCCCC-CCCCC--CccccccCCCC
Q 047128 190 ESIGVMTSLESIDFSTNQLSGEIPESM---SSLTFSNHLNLSNNNLTGKIPSS-TQLQS--FDVSSFAGNDL 255 (312)
Q Consensus 190 ~~~~~l~~L~~L~l~~N~l~~~~p~~~---~~l~~L~~L~l~~N~l~~~~~~~-~~l~~--l~~~~l~~n~l 255 (312)
..|..+++|+.|++++|++++..+..| ..+++|+.|++++|+|+...+.. ..+.. ++.+++.+|++
T Consensus 130 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 130 NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 889999999999999999995444445 56899999999999998654322 23333 35567777744
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=8.2e-21 Score=154.99 Aligned_cols=152 Identities=13% Similarity=0.188 Sum_probs=131.2
Q ss_pred CEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccC
Q 047128 8 VWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIAD 87 (312)
Q Consensus 8 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 87 (312)
+.++.+++.++ .+|..+. +++++|++++|+++ .++...+..+++|+.|++++|++++..|..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 57899999998 5666553 68999999999999 67765555899999999999999988899999999999999999
Q ss_pred CCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChh
Q 047128 88 TNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLE 167 (312)
Q Consensus 88 n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~ 167 (312)
|.++...+..|..+++ |++|++++|.+++..|..
T Consensus 90 N~l~~l~~~~f~~l~~----------------------------------------------L~~L~L~~N~l~~~~~~~ 123 (220)
T 2v9t_B 90 NKITELPKSLFEGLFS----------------------------------------------LQLLLLNANKINCLRVDA 123 (220)
T ss_dssp SCCCCCCTTTTTTCTT----------------------------------------------CCEEECCSSCCCCCCTTT
T ss_pred CcCCccCHhHccCCCC----------------------------------------------CCEEECCCCCCCEeCHHH
Confidence 9998554444544444 888999999999888889
Q ss_pred hhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCC
Q 047128 168 VTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLS 209 (312)
Q Consensus 168 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 209 (312)
|..+++|++|++++|++++..+..+..+++|++|++++|.+.
T Consensus 124 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 999999999999999999777777889999999999999886
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.85 E-value=2.5e-20 Score=173.30 Aligned_cols=171 Identities=19% Similarity=0.299 Sum_probs=108.4
Q ss_pred CCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEE
Q 047128 4 LTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQIL 83 (312)
Q Consensus 4 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 83 (312)
+++|+.|++++|.+.. ++ .+..+++|++|+|++|++. .++. +. .+++|+.|+|++|++++ +| .+..+++|+.|
T Consensus 42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~-~~~~-l~-~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP-LT-NLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL 114 (605)
T ss_dssp HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCC-CCGG-GG-GCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCC-CChh-hc-cCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence 4555666666666552 22 3555666666666666665 4443 32 56666666666666652 22 45556666666
Q ss_pred EccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc
Q 047128 84 DIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK 163 (312)
Q Consensus 84 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~ 163 (312)
++++|.+... ..+. .+++|+.|++++|.+++.
T Consensus 115 ~Ls~N~l~~l--~~l~----------------------------------------------~l~~L~~L~Ls~N~l~~l 146 (605)
T 1m9s_A 115 SLEHNGISDI--NGLV----------------------------------------------HLPQLESLYLGNNKITDI 146 (605)
T ss_dssp ECTTSCCCCC--GGGG----------------------------------------------GCTTCSEEECCSSCCCCC
T ss_pred EecCCCCCCC--cccc----------------------------------------------CCCccCEEECCCCccCCc
Confidence 6666665532 1232 345577788888887754
Q ss_pred CChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCccccc
Q 047128 164 IPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGK 235 (312)
Q Consensus 164 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 235 (312)
..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|++++ ++ .+..+++|+.|++++|++++.
T Consensus 147 --~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 147 --TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp --GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred --hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence 467778888888888888875444 6777888888888888874 33 467778888888888877764
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=1e-20 Score=161.05 Aligned_cols=193 Identities=19% Similarity=0.262 Sum_probs=158.6
Q ss_pred CCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccccccc
Q 047128 30 TLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCS 109 (312)
Q Consensus 30 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l 109 (312)
.+..+.+..+.+.+..+.. .+++|+.|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|+.|++
T Consensus 25 ~~~~~~l~~~~~~~~~~~~---~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l 97 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFL 97 (291)
T ss_dssp HHHHHHTTCSCTTSEECHH---HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred HHHHHHhcCCCcccccchh---hcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEEC
Confidence 3445567777777333322 68999999999999984 44 48889999999999999986554 899999999999
Q ss_pred cccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccC
Q 047128 110 FTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIP 189 (312)
Q Consensus 110 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 189 (312)
.+|.+.... .+..+++|++|++++|++++. ..+..+++|++|++++|++++ +
T Consensus 98 ~~n~l~~~~------------------------~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~- 149 (291)
T 1h6t_A 98 DENKVKDLS------------------------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I- 149 (291)
T ss_dssp CSSCCCCGG------------------------GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-C-
T ss_pred CCCcCCCCh------------------------hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc-c-
Confidence 999876421 234578899999999999953 468899999999999999984 4
Q ss_pred hhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCccccccCCCCCCCCC
Q 047128 190 ESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPI 260 (312)
Q Consensus 190 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~~p~ 260 (312)
..+..+++|+.|++++|++++..+ +..+++|++|++++|++++. +....+++|+.+++.+|.+...|.
T Consensus 150 ~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 150 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEEEEEECCCE
T ss_pred hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-hhhccCCCCCEEECcCCcccCCcc
Confidence 568899999999999999995544 88999999999999999874 456788999999999998876654
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=7.8e-21 Score=166.08 Aligned_cols=214 Identities=14% Similarity=0.060 Sum_probs=164.8
Q ss_pred CEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCC-cCCCCCCCCcE-EEc
Q 047128 8 VWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLP-TRLCDLPFLQI-LDI 85 (312)
Q Consensus 8 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~l 85 (312)
++++-++++++ .+|..+ .+++++|++++|+|+ .+|.+.+.++++|++|+|++|++.+.+| ..|.++++++. +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 57888899998 567665 368999999999999 8998777689999999999999865555 46888988775 666
Q ss_pred cCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCC-CcccccC
Q 047128 86 ADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISR-NNFSGKI 164 (312)
Q Consensus 86 ~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~-n~i~~~~ 164 (312)
+.|+++...|..|..+++|+.+++.+|.+....+.... ...++..+++.+ +.+....
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~----------------------~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI----------------------HSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTC----------------------CBSSCEEEEEESCTTCCEEC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhc----------------------ccchhhhhhhcccccccccc
Confidence 77999978888999999999999999988754432221 133466788855 6677666
Q ss_pred ChhhhcCC-CCCEEEccCCCCccccChhhcCCCCCcEEECCC-ccCCccCCccccCCCCCCeEecccCcccccCCCC-CC
Q 047128 165 PLEVTNLK-ALHSLNFSYNSFTRRIPESIGVMTSLESIDFST-NQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-TQ 241 (312)
Q Consensus 165 p~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~ 241 (312)
+..|..+. .++.|++++|+++ .+|......++|+++++++ |.++...++.|..+++|++|++++|+|+..++.. ..
T Consensus 146 ~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~ 224 (350)
T 4ay9_X 146 RNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224 (350)
T ss_dssp TTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT
T ss_pred ccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc
Confidence 66777664 6899999999998 5665555667899999985 6777444457899999999999999999766543 33
Q ss_pred CCCCccc
Q 047128 242 LQSFDVS 248 (312)
Q Consensus 242 l~~l~~~ 248 (312)
+.+|+.+
T Consensus 225 L~~L~~l 231 (350)
T 4ay9_X 225 LKKLRAR 231 (350)
T ss_dssp CCEEECT
T ss_pred chHhhhc
Confidence 4444433
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.84 E-value=9.3e-21 Score=152.03 Aligned_cols=154 Identities=16% Similarity=0.248 Sum_probs=109.9
Q ss_pred cCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccc
Q 047128 26 KNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMV 105 (312)
Q Consensus 26 ~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 105 (312)
..+++|++|++++|.+. .+| .+. .+++|++|++++|.++ . +..+..+++|++|++++|.+++..+..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~----- 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSG----- 110 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTT-----
T ss_pred hhcCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcC-----
Confidence 44567777777777777 666 443 6777777777777665 2 235677777777777777776544444433
Q ss_pred cccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCC-C
Q 047128 106 TSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNS-F 184 (312)
Q Consensus 106 ~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~-l 184 (312)
+++|++|++++|.+++..+..+..+++|++|++++|+ +
T Consensus 111 -----------------------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i 149 (197)
T 4ezg_A 111 -----------------------------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149 (197)
T ss_dssp -----------------------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBC
T ss_pred -----------------------------------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCc
Confidence 3347788888888887777888888888888888887 6
Q ss_pred ccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccc
Q 047128 185 TRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTG 234 (312)
Q Consensus 185 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 234 (312)
+ .+| .+..+++|++|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus 150 ~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 150 T-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp C-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred c-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 5 555 47788888889988888884 44 57788888888888888753
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.84 E-value=1.2e-20 Score=151.38 Aligned_cols=153 Identities=22% Similarity=0.320 Sum_probs=126.3
Q ss_pred CCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcE
Q 047128 3 SLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQI 82 (312)
Q Consensus 3 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 82 (312)
.+++|++|++++|.++ .+| .+..+++|++|++++|.++ .++ .+. .+++|++|++++|++++..+..+..+++|++
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hhh-cCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 3578999999999998 555 6889999999999999887 554 454 7999999999999999878888999999999
Q ss_pred EEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCc-cc
Q 047128 83 LDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNN-FS 161 (312)
Q Consensus 83 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~-i~ 161 (312)
|++++|.+++..+..+..+++ |++|++++|. ++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~----------------------------------------------L~~L~L~~n~~i~ 150 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPK----------------------------------------------VNSIDLSYNGAIT 150 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSS----------------------------------------------CCEEECCSCTBCC
T ss_pred EEecCCccCcHhHHHHhhCCC----------------------------------------------CCEEEccCCCCcc
Confidence 999999998767766665554 7778888887 66
Q ss_pred ccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCc
Q 047128 162 GKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSG 210 (312)
Q Consensus 162 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 210 (312)
.+| .+..+++|++|++++|.++ .++ .+..+++|+.|++++|++.+
T Consensus 151 -~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 151 -DIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -CCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCEEEECBC----
T ss_pred -ccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCEEEeeCcccCC
Confidence 455 6888999999999999998 455 57888999999999998863
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.84 E-value=4.9e-21 Score=160.61 Aligned_cols=170 Identities=18% Similarity=0.277 Sum_probs=129.3
Q ss_pred CCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEE
Q 047128 5 TSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILD 84 (312)
Q Consensus 5 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 84 (312)
.+++.++++++.+++. + .+..+++|++|++++|.++ .+| .+. .+++|+.|++++|++++. +. +..+++|++|+
T Consensus 19 ~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDL-SP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEE
T ss_pred HHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCC-hh-hccCCCCCEEE
Confidence 3455566777777633 3 5667778888888888877 676 444 678888888888888743 33 77788888888
Q ss_pred ccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccC
Q 047128 85 IADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI 164 (312)
Q Consensus 85 l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~ 164 (312)
+++|++++ +|... .++|+.|++++|++++ .
T Consensus 92 L~~N~l~~-l~~~~------------------------------------------------~~~L~~L~L~~N~l~~-~ 121 (263)
T 1xeu_A 92 VNRNRLKN-LNGIP------------------------------------------------SACLSRLFLDNNELRD-T 121 (263)
T ss_dssp CCSSCCSC-CTTCC------------------------------------------------CSSCCEEECCSSCCSB-S
T ss_pred CCCCccCC-cCccc------------------------------------------------cCcccEEEccCCccCC-C
Confidence 88887763 22100 0348899999999985 3
Q ss_pred ChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccC
Q 047128 165 PLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKI 236 (312)
Q Consensus 165 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 236 (312)
+ .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++++. ..+..+++|+.|++++|++++.+
T Consensus 122 ~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 122 D-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp G-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred h-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 3 58899999999999999984 44 578899999999999999955 66888999999999999998763
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=4.6e-21 Score=178.27 Aligned_cols=191 Identities=21% Similarity=0.337 Sum_probs=144.0
Q ss_pred EEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCC
Q 047128 9 WLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADT 88 (312)
Q Consensus 9 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 88 (312)
.+.+..+.+.... .+..+++|+.|++++|.+. .+|. +. .+++|+.|+|++|++++..+ +..+++|+.|++++|
T Consensus 25 ~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~-~l~~-l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 25 KDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCC-CCTT-GG-GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred HHhccCCCccccc--chhcCCCCCEEECcCCCCC-CChH-Hc-cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence 3445555555332 2345667777777777777 5653 33 67777777777777774333 677777777777777
Q ss_pred CCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhh
Q 047128 89 NLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV 168 (312)
Q Consensus 89 ~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~ 168 (312)
.+.+ ++ .+. .+++|+.|++++|.+++ + ..+
T Consensus 98 ~l~~-l~-~l~----------------------------------------------~l~~L~~L~Ls~N~l~~-l-~~l 127 (605)
T 1m9s_A 98 KIKD-LS-SLK----------------------------------------------DLKKLKSLSLEHNGISD-I-NGL 127 (605)
T ss_dssp CCCC-CT-TST----------------------------------------------TCTTCCEEECTTSCCCC-C-GGG
T ss_pred CCCC-Ch-hhc----------------------------------------------cCCCCCEEEecCCCCCC-C-ccc
Confidence 7763 21 122 24568999999999995 3 468
Q ss_pred hcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCccc
Q 047128 169 TNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVS 248 (312)
Q Consensus 169 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~ 248 (312)
..+++|+.|+|++|.+++ + ..+..+++|+.|+|++|++++..| +..+++|+.|++++|+|++. +....+++|+.+
T Consensus 128 ~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L 202 (605)
T 1m9s_A 128 VHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVL 202 (605)
T ss_dssp GGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEE
T ss_pred cCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEE
Confidence 899999999999999984 4 568899999999999999996655 88999999999999999975 566788999999
Q ss_pred cccCCCCCCCCCC
Q 047128 249 SFAGNDLCGAPIP 261 (312)
Q Consensus 249 ~l~~n~l~~~p~~ 261 (312)
++.+|.+.+.|..
T Consensus 203 ~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 203 ELFSQECLNKPIN 215 (605)
T ss_dssp ECCSEEEECCCCC
T ss_pred EccCCcCcCCccc
Confidence 9999988776643
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=1.6e-19 Score=148.25 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=128.5
Q ss_pred cCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEcc
Q 047128 7 LVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIA 86 (312)
Q Consensus 7 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 86 (312)
-+.++.+++.++ .+|..+. ++|++|++++|.+++..|..+. .+++|+.|++++|+++...+..|..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFD-SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhh-CccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 467899999987 5665543 8899999999999944455554 89999999999999986656668999999999999
Q ss_pred CCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCCh
Q 047128 87 DTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL 166 (312)
Q Consensus 87 ~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~ 166 (312)
+|.++...+..|..+++ |++|++++|+++ .+|.
T Consensus 97 ~N~l~~l~~~~~~~l~~----------------------------------------------L~~L~Ls~N~l~-~lp~ 129 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVH----------------------------------------------LKELFMCCNKLT-ELPR 129 (229)
T ss_dssp SSCCCCCCTTTTTTCTT----------------------------------------------CCEEECCSSCCC-SCCT
T ss_pred CCcCCccChhHhCcchh----------------------------------------------hCeEeccCCccc-ccCc
Confidence 99998665555554444 888999999999 7788
Q ss_pred hhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccC
Q 047128 167 EVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEI 212 (312)
Q Consensus 167 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 212 (312)
.+..+++|++|++++|++++..+..+..+++|+.|++++|.+....
T Consensus 130 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 130 GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 8899999999999999998666677888999999999999988543
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=9e-20 Score=167.99 Aligned_cols=179 Identities=21% Similarity=0.282 Sum_probs=149.7
Q ss_pred CCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccccccc
Q 047128 30 TLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCS 109 (312)
Q Consensus 30 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l 109 (312)
++++|++++|.++ .+|..++ ++|+.|++++|+++ .+| ..+++|++|++++|.+++ +|. +.. +|+.|++
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCC-ccCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 8999999999999 6998763 78999999999999 677 457899999999999996 666 554 8999999
Q ss_pred cccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccC
Q 047128 110 FTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIP 189 (312)
Q Consensus 110 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 189 (312)
.+|.+..... .+++|+.|++++|.+++ +|. .+++|++|++++|++++ +|
T Consensus 128 s~N~l~~lp~--------------------------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp 176 (571)
T 3cvr_A 128 DNNQLTMLPE--------------------------LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LP 176 (571)
T ss_dssp CSSCCSCCCC--------------------------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC
T ss_pred CCCcCCCCCC--------------------------cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cc
Confidence 9998875211 25679999999999995 665 57899999999999984 77
Q ss_pred hhhcCCCCCcEEECCCccCCccCCccccCCCCC-------CeEecccCcccccCCCCCCCCCCccccccCCCCCCC
Q 047128 190 ESIGVMTSLESIDFSTNQLSGEIPESMSSLTFS-------NHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGA 258 (312)
Q Consensus 190 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L-------~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~~ 258 (312)
. +. ++|+.|++++|+|+ .+|. +.. +| +.|++++|+|+..++....+++++.+++++|.+++.
T Consensus 177 ~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 177 E-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp C-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred h-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 7 65 89999999999999 7777 554 67 999999999997666567799999999999988753
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.81 E-value=1.4e-19 Score=144.50 Aligned_cols=63 Identities=24% Similarity=0.319 Sum_probs=32.1
Q ss_pred CEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCc-CCCCCCCCcEEEccCCCCCcccchhh
Q 047128 32 ESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPT-RLCDLPFLQILDIADTNLSGAIPNWI 98 (312)
Q Consensus 32 ~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~ 98 (312)
+++++++|+++ .+|..++ .++++|++++|++++..+. .|..+++|++|++++|.+++..|..|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 74 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF 74 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc
Confidence 45566666665 5555443 2555556666555533332 24455555555555555554444333
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.80 E-value=9.4e-22 Score=181.78 Aligned_cols=184 Identities=15% Similarity=0.131 Sum_probs=108.4
Q ss_pred cCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCc-------------ccccCCcCCCCCCCCcEEE-ccCCCCC
Q 047128 26 KNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK-------------FHGPLPTRLCDLPFLQILD-IADTNLS 91 (312)
Q Consensus 26 ~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~l~ 91 (312)
..+++|+.|++++|+++ .+|..+. .+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~-~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELE-SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHH-HHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 34556666666666665 5666665 56666666665443 2334444555556666665 4444322
Q ss_pred cccch------hhHh--hcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc
Q 047128 92 GAIPN------WINN--LTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK 163 (312)
Q Consensus 92 ~~~~~------~~~~--l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~ 163 (312)
.++. .+.. ...|+.|++.+|.+... +. +..+++|+.|++++|.++ .
T Consensus 424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-----------------------p~-~~~l~~L~~L~Ls~N~l~-~ 477 (567)
T 1dce_A 424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-----------------------CH-LEQLLLVTHLDLSHNRLR-A 477 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-----------------------CC-GGGGTTCCEEECCSSCCC-C
T ss_pred -hhhhhhhhcccccccCccCceEEEecCCCCCCC-----------------------cC-ccccccCcEeecCccccc-c
Confidence 1110 0011 11234444444443321 11 233555777777777777 6
Q ss_pred CChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccC-CccccCCCCCCeEecccCcccccCCCC
Q 047128 164 IPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEI-PESMSSLTFSNHLNLSNNNLTGKIPSS 239 (312)
Q Consensus 164 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~~~~ 239 (312)
+|..+..+++|+.|+|++|++++ +| .++.+++|+.|++++|++++.. |..+..+++|+.|++++|++++.++..
T Consensus 478 lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 478 LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 67777777777777777777773 56 5677777777777777777554 777777777777777777777766544
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.80 E-value=1.6e-19 Score=144.17 Aligned_cols=88 Identities=19% Similarity=0.294 Sum_probs=55.2
Q ss_pred ccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEeccc
Q 047128 150 VRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSN 229 (312)
Q Consensus 150 L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 229 (312)
|++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+++|++|++++
T Consensus 56 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 55566666666655566666666666666666666655555566666666666666666655566666666666666666
Q ss_pred CcccccCC
Q 047128 230 NNLTGKIP 237 (312)
Q Consensus 230 N~l~~~~~ 237 (312)
|+++|.++
T Consensus 136 N~l~c~c~ 143 (192)
T 1w8a_A 136 NPFNCNCH 143 (192)
T ss_dssp CCBCCSGG
T ss_pred CCccCcCc
Confidence 66665443
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=7.2e-20 Score=153.45 Aligned_cols=173 Identities=16% Similarity=0.259 Sum_probs=141.8
Q ss_pred CCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhccccc
Q 047128 27 NCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT 106 (312)
Q Consensus 27 ~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 106 (312)
++.++..++++++.++ .++ .+. .+++|+.|++++|+++ .++ .+..+++|++|++++|++++..+ +..+
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~-~~~-~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l----- 84 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLV-SQK-ELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDL----- 84 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEE-CHH-HHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTC-----
T ss_pred HHHHHHHHHhcCCCcc-ccc-chh-hcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccC-----
Confidence 4566778889999998 666 344 7999999999999998 555 68889999999999999985433 4333
Q ss_pred ccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCcc
Q 047128 107 SCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTR 186 (312)
Q Consensus 107 l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~ 186 (312)
++|++|++++|++++ +|. +.. ++|++|++++|++++
T Consensus 85 -----------------------------------------~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~ 120 (263)
T 1xeu_A 85 -----------------------------------------TKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD 120 (263)
T ss_dssp -----------------------------------------SSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB
T ss_pred -----------------------------------------CCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC
Confidence 448889999999985 443 233 999999999999984
Q ss_pred ccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCCCCCCCCccccccCCCCCCCCC
Q 047128 187 RIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPI 260 (312)
Q Consensus 187 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~l~~n~l~~~p~ 260 (312)
++ .+..+++|+.|++++|++++ ++ .+..+++|++|++++|++++. +....+++|+.+++++|.+.+.|.
T Consensus 121 -~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 121 -TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp -SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred -Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCcc
Confidence 44 48899999999999999995 44 588999999999999999987 666788999999999998876654
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.77 E-value=8.1e-20 Score=173.73 Aligned_cols=147 Identities=15% Similarity=0.168 Sum_probs=86.1
Q ss_pred cCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeee
Q 047128 52 RFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEK 131 (312)
Q Consensus 52 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~ 131 (312)
.++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|+.|++.+|.+.. ++
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp------------ 286 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LP------------ 286 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS-CC------------
T ss_pred cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc-cC------------
Confidence 5666666666666666 45555556666666666666666 556666666665555555555441 11
Q ss_pred eeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCC-CCcEEECCCccCCc
Q 047128 132 ASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMT-SLESIDFSTNQLSG 210 (312)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~l~~N~l~~ 210 (312)
..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.+++.+|..+.... .+..+++++|.+++
T Consensus 287 ----------~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 287 ----------AELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp ----------SSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred ----------hhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence 11233556777888888777 5666677788888888888888777776654332 12346677777776
Q ss_pred cCCccccCCCCCCeEecccC
Q 047128 211 EIPESMSSLTFSNHLNLSNN 230 (312)
Q Consensus 211 ~~p~~~~~l~~L~~L~l~~N 230 (312)
.+|.. |+.|+++.|
T Consensus 356 ~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 356 PLPHE------RRFIEINTD 369 (727)
T ss_dssp CCCCC---------------
T ss_pred cCccc------cceeEeecc
Confidence 66653 344455554
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.76 E-value=8.6e-18 Score=134.14 Aligned_cols=88 Identities=24% Similarity=0.308 Sum_probs=70.1
Q ss_pred ccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEeccc
Q 047128 150 VRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSN 229 (312)
Q Consensus 150 L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 229 (312)
|++|++++|.+++..+..|..+++|++|+|++|++++..|..|..+++|+.|++++|++++..+..|..+++|+.|++++
T Consensus 56 L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence 66677777777766667788888888888888888866677788888888888888888855555688888899999999
Q ss_pred CcccccCC
Q 047128 230 NNLTGKIP 237 (312)
Q Consensus 230 N~l~~~~~ 237 (312)
|++.|.+.
T Consensus 136 N~~~C~c~ 143 (193)
T 2wfh_A 136 NPLYCDCN 143 (193)
T ss_dssp SCEECSGG
T ss_pred CCeecCCc
Confidence 98887553
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=2e-21 Score=179.59 Aligned_cols=188 Identities=15% Similarity=0.151 Sum_probs=151.8
Q ss_pred cCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCC-------------CCcccchhhHhhccccccc-ccccccccc
Q 047128 52 RFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTN-------------LSGAIPNWINNLTGMVTSC-SFTRSVQQY 117 (312)
Q Consensus 52 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~l~-l~~n~~~~~ 117 (312)
..++|+.|++++|+++ .+|..++.+++|+.|++++|. ..+..|..+..+++|+.++ +..|.+...
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 5789999999999998 789999999999999997764 5567788889999999888 555543321
Q ss_pred cCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCC
Q 047128 118 LPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTS 197 (312)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 197 (312)
....+. ...+.. -....|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++
T Consensus 426 ~~l~l~-------------~n~i~~--l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 487 (567)
T 1dce_A 426 RSKFLL-------------ENSVLK--MEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRC 487 (567)
T ss_dssp HHHHHH-------------HHHHHH--HHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred hhhhhh-------------cccccc--cCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCC
Confidence 100000 000000 012358999999999995 665 999999999999999999 88999999999
Q ss_pred CcEEECCCccCCccCCccccCCCCCCeEecccCcccccC--CCCCCCCCCccccccCCCCCCCCC
Q 047128 198 LESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKI--PSSTQLQSFDVSSFAGNDLCGAPI 260 (312)
Q Consensus 198 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~--~~~~~l~~l~~~~l~~n~l~~~p~ 260 (312)
|+.|++++|++++ +| .+..+++|+.|++++|++++.. .....+++|+.+++++|.+++.|.
T Consensus 488 L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 488 LEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 9999999999995 77 7999999999999999999984 455789999999999999988765
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.76 E-value=6.1e-18 Score=131.94 Aligned_cols=133 Identities=17% Similarity=0.213 Sum_probs=80.7
Q ss_pred CCCCCEEECcCCCCC-CCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhccccc
Q 047128 28 CTTLESLDVGENEFV-GNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT 106 (312)
Q Consensus 28 l~~L~~L~l~~n~l~-~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 106 (312)
.++|++|++++|.++ +.+|..+. .+++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~--- 96 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN--- 96 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT---
T ss_pred cccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC---
Confidence 466777777777776 56666544 677777777777777743 55667777777777777776545544433333
Q ss_pred ccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCC-hhhhcCCCCCEEEccCCCCc
Q 047128 107 SCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP-LEVTNLKALHSLNFSYNSFT 185 (312)
Q Consensus 107 l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p-~~~~~l~~L~~L~Ls~n~l~ 185 (312)
|++|++++|.+++..+ ..+..+++|++|++++|.++
T Consensus 97 -------------------------------------------L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 97 -------------------------------------------LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp -------------------------------------------CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred -------------------------------------------CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 5556666666653221 45556666666666666665
Q ss_pred cccC---hhhcCCCCCcEEECCCccCC
Q 047128 186 RRIP---ESIGVMTSLESIDFSTNQLS 209 (312)
Q Consensus 186 ~~~p---~~~~~l~~L~~L~l~~N~l~ 209 (312)
+..+ ..+..+++|+.|++++|.+.
T Consensus 134 ~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 134 NLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred chHHHHHHHHHhCccCcEecCCCCChh
Confidence 3322 24555566666666666555
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.75 E-value=4.9e-18 Score=132.49 Aligned_cols=137 Identities=17% Similarity=0.191 Sum_probs=109.9
Q ss_pred CCCCcEEEccCCccc-ccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeee
Q 047128 53 FSRMVVLILRSNKFH-GPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEK 131 (312)
Q Consensus 53 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~ 131 (312)
.++|+.|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------- 69 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK------------------------------- 69 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC-------------------------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc-------------------------------
Confidence 478899999999987 66777788888999999999888744 22222
Q ss_pred eeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCcccc-ChhhcCCCCCcEEECCCccCCc
Q 047128 132 ASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRI-PESIGVMTSLESIDFSTNQLSG 210 (312)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~l~~N~l~~ 210 (312)
+++|++|++++|.+++..|..+..+++|++|++++|.+++.. +..+..+++|+.|++++|.+++
T Consensus 70 ---------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 70 ---------------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134 (168)
T ss_dssp ---------------CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred ---------------CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence 345888999999999778888888999999999999998432 2678889999999999999995
Q ss_pred cCC---ccccCCCCCCeEecccCcccccCC
Q 047128 211 EIP---ESMSSLTFSNHLNLSNNNLTGKIP 237 (312)
Q Consensus 211 ~~p---~~~~~l~~L~~L~l~~N~l~~~~~ 237 (312)
..+ ..+..+++|++|++++|.+...+.
T Consensus 135 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 135 LNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp STTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred hHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 444 378889999999999998875543
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=5.1e-19 Score=168.25 Aligned_cols=182 Identities=15% Similarity=0.134 Sum_probs=118.2
Q ss_pred CCCCEEECcCCCCCCCCChhHHhcCCC-----CcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcc
Q 047128 29 TTLESLDVGENEFVGNIPTWIGERFSR-----MVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTG 103 (312)
Q Consensus 29 ~~L~~L~l~~n~l~~~lp~~~~~~l~~-----L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 103 (312)
+.++.|++.+|.+. ..+..+. .... +..++++.|.+. ..+..+..+++|+.|++++|.+. .+|..+..+++
T Consensus 173 ~~~~~l~L~~n~~~-~~~~~~l-~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKD-EANQALL-QHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CccceEEeeCCCCC-cchhhHh-hcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 55788888888887 5565544 2222 333445556665 66788999999999999999998 77777779999
Q ss_pred cccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCC
Q 047128 104 MVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNS 183 (312)
Q Consensus 104 L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~ 183 (312)
|+.|++.+|.+.. + +..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.
T Consensus 249 L~~L~Ls~N~l~~-l----------------------p~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~ 304 (727)
T 4b8c_D 249 LTRLYLNGNSLTE-L----------------------PAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNM 304 (727)
T ss_dssp CSCCBCTTSCCSC-C----------------------CGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSC
T ss_pred CCEEEeeCCcCcc-c----------------------ChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCC
Confidence 9999999998862 2 333456889999999999999 779999999999999999999
Q ss_pred CccccChhhcCCCCCcEEECCCccCCccCCccccCCCC-CCeEecccCcccccCCCC
Q 047128 184 FTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTF-SNHLNLSNNNLTGKIPSS 239 (312)
Q Consensus 184 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~-L~~L~l~~N~l~~~~~~~ 239 (312)
++ .+|..|+.+++|+.|+|++|.+++.+|..+..... +..+++++|.+++.+|..
T Consensus 305 l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 305 VT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp CC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred CC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 98 88888999999999999999999888887754322 234789999999877753
No 122
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.74 E-value=2.9e-17 Score=129.25 Aligned_cols=88 Identities=19% Similarity=0.180 Sum_probs=51.9
Q ss_pred ccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEeccc
Q 047128 150 VRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSN 229 (312)
Q Consensus 150 L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 229 (312)
|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 44455555555544444455566666666666666644444455666666666666666644444455666677777777
Q ss_pred CcccccCC
Q 047128 230 NNLTGKIP 237 (312)
Q Consensus 230 N~l~~~~~ 237 (312)
|++++.++
T Consensus 134 N~~~~~~~ 141 (177)
T 2o6r_A 134 NPWDCSCP 141 (177)
T ss_dssp SCBCCCHH
T ss_pred CCeeccCc
Confidence 77666544
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=131.56 Aligned_cols=127 Identities=19% Similarity=0.282 Sum_probs=76.8
Q ss_pred CEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccccccccc
Q 047128 32 ESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFT 111 (312)
Q Consensus 32 ~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~ 111 (312)
+++++++|.++ .+|..++ +++++|++++|+++ .+|..|..+++|++|++++|.++...+..|..+++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~-------- 79 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ-------- 79 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT--------
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCC--------
Confidence 45666666666 5665432 45666666666665 45555666666666666666666444444443333
Q ss_pred cccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChh
Q 047128 112 RSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPES 191 (312)
Q Consensus 112 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 191 (312)
|++|++++|.+++..+..|..+++|++|+|++|+++...+..
T Consensus 80 --------------------------------------L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~ 121 (193)
T 2wfh_A 80 --------------------------------------LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA 121 (193)
T ss_dssp --------------------------------------CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred --------------------------------------CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhh
Confidence 555666666666555556666667777777777766444445
Q ss_pred hcCCCCCcEEECCCccCC
Q 047128 192 IGVMTSLESIDFSTNQLS 209 (312)
Q Consensus 192 ~~~l~~L~~L~l~~N~l~ 209 (312)
+..+++|+.|++++|.+.
T Consensus 122 ~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 122 FNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTTCTTCCEEECCSSCEE
T ss_pred hhcCccccEEEeCCCCee
Confidence 666667777777777665
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.72 E-value=1.6e-17 Score=126.91 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=39.2
Q ss_pred ccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccc-cChhhcCCCCCcEEECCCccCCccCC---ccccCCCCCCeE
Q 047128 150 VRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRR-IPESIGVMTSLESIDFSTNQLSGEIP---ESMSSLTFSNHL 225 (312)
Q Consensus 150 L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p---~~~~~l~~L~~L 225 (312)
|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|
T Consensus 66 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 66 LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp CCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred CCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence 44455555555543444444455555555555555421 12444555555555555555553332 244555555555
Q ss_pred ecc
Q 047128 226 NLS 228 (312)
Q Consensus 226 ~l~ 228 (312)
+++
T Consensus 146 ~l~ 148 (149)
T 2je0_A 146 DGY 148 (149)
T ss_dssp TTB
T ss_pred cCC
Confidence 554
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=3.5e-17 Score=141.64 Aligned_cols=202 Identities=9% Similarity=0.052 Sum_probs=128.0
Q ss_pred CChhHHhc--------CCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhccccccccccccc--
Q 047128 45 IPTWIGER--------FSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSV-- 114 (312)
Q Consensus 45 lp~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~-- 114 (312)
+|...|.+ +++|+.+++.+ .++.+.+.+|.++++|+.++++.|.+..+.+.+|.....+..+....+..
T Consensus 84 I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~ 162 (329)
T 3sb4_A 84 VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR 162 (329)
T ss_dssp ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH
T ss_pred cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh
Confidence 45555556 77777777777 66655556677777777777777777655556666655555544433211
Q ss_pred --ccccCCCCccce----------------------------eeeeeeeeeecCcccchHHHhccccEEEcCCCcccccC
Q 047128 115 --QQYLPLPIDVGV----------------------------ILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI 164 (312)
Q Consensus 115 --~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~ 164 (312)
..+....+.... ....................+++|+.+++++|+++...
T Consensus 163 ~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~ 242 (329)
T 3sb4_A 163 FKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIP 242 (329)
T ss_dssp TSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEEC
T ss_pred ccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceec
Confidence 000000000000 00000000000111112234688999999999999777
Q ss_pred ChhhhcCCCCCEEEccCCCCccccChhhcCCCCCc-EEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC-CCC
Q 047128 165 PLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLE-SIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-TQL 242 (312)
Q Consensus 165 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~-~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l 242 (312)
+.+|.++.+|+++++.+| ++...+.+|.++++|+ .+++.+ .++...+..|..+++|+.+++++|+++...+.. ...
T Consensus 243 ~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 243 DFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNG 320 (329)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred HhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence 778999999999999988 7656667788999999 999998 787566788999999999999999888665533 445
Q ss_pred CCCcccc
Q 047128 243 QSFDVSS 249 (312)
Q Consensus 243 ~~l~~~~ 249 (312)
.+|+.++
T Consensus 321 ~~L~~ly 327 (329)
T 3sb4_A 321 VPSKLIY 327 (329)
T ss_dssp CCCCEEE
T ss_pred cchhhhc
Confidence 5555443
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.72 E-value=2.8e-17 Score=125.57 Aligned_cols=129 Identities=16% Similarity=0.192 Sum_probs=95.0
Q ss_pred CCCCCEEECcCCCCC-CCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhccccc
Q 047128 28 CTTLESLDVGENEFV-GNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVT 106 (312)
Q Consensus 28 l~~L~~L~l~~n~l~-~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 106 (312)
.++|++|++++|.++ +.+|..+. .+++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~--- 89 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTD-EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN--- 89 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCT-TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT---
T ss_pred CccCeEEEccCCcCChhHHHHHHh-hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCC---
Confidence 356788888888887 56776554 788888888888888754 66788888888888888887656665554544
Q ss_pred ccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCccccc-CChhhhcCCCCCEEEccCCCCc
Q 047128 107 SCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK-IPLEVTNLKALHSLNFSYNSFT 185 (312)
Q Consensus 107 l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~-~p~~~~~l~~L~~L~Ls~n~l~ 185 (312)
|++|++++|.+++. .+..+..+++|++|++++|.++
T Consensus 90 -------------------------------------------L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 90 -------------------------------------------LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp -------------------------------------------CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred -------------------------------------------CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 67788888887753 2366778888888888888887
Q ss_pred cccC---hhhcCCCCCcEEECCC
Q 047128 186 RRIP---ESIGVMTSLESIDFST 205 (312)
Q Consensus 186 ~~~p---~~~~~l~~L~~L~l~~ 205 (312)
+..+ ..+..+++|+.|++++
T Consensus 127 ~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 127 NLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp GSTTHHHHHHHHCTTCCEETTBC
T ss_pred chHHHHHHHHHHCCCcccccCCC
Confidence 5444 3677788888887763
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.72 E-value=7.7e-17 Score=126.80 Aligned_cols=133 Identities=20% Similarity=0.193 Sum_probs=90.2
Q ss_pred CCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhccccccccc
Q 047128 31 LESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSF 110 (312)
Q Consensus 31 L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 110 (312)
.+.+++++++++ .+|..+ .++|+.|++++|++++..+..+..+++|++|++++|.+++..+..+..++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------- 76 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT-------- 76 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT--------
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC--------
Confidence 456777777777 667543 35777777777777755555567777777777777777644443343333
Q ss_pred ccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccCh
Q 047128 111 TRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPE 190 (312)
Q Consensus 111 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~ 190 (312)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+.
T Consensus 77 --------------------------------------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 118 (177)
T 2o6r_A 77 --------------------------------------KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDG 118 (177)
T ss_dssp --------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred --------------------------------------ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHH
Confidence 366677777777766666667778888888888887754445
Q ss_pred hhcCCCCCcEEECCCccCCccCC
Q 047128 191 SIGVMTSLESIDFSTNQLSGEIP 213 (312)
Q Consensus 191 ~~~~l~~L~~L~l~~N~l~~~~p 213 (312)
.+..+++|++|++++|.+.+..|
T Consensus 119 ~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 119 IFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTTCTTCCEEECCSSCBCCCHH
T ss_pred HhcCCcccCEEEecCCCeeccCc
Confidence 55677788888888887775443
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.68 E-value=1.9e-16 Score=124.48 Aligned_cols=134 Identities=16% Similarity=0.176 Sum_probs=87.1
Q ss_pred cccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcc
Q 047128 24 SLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTG 103 (312)
Q Consensus 24 ~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 103 (312)
.+.++++|++|++++|.++ .+|. +....++|+.|++++|++++. ..+..+++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 4567888888888888888 6754 442334888888888888854 56777888888888888777443333344433
Q ss_pred cccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCCh--hhhcCCCCCEEEccC
Q 047128 104 MVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL--EVTNLKALHSLNFSY 181 (312)
Q Consensus 104 L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~--~~~~l~~L~~L~Ls~ 181 (312)
|++|++++|.++ .+|. .+..+++|++|++++
T Consensus 90 ----------------------------------------------L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~ 122 (176)
T 1a9n_A 90 ----------------------------------------------LTELILTNNSLV-ELGDLDPLASLKSLTYLCILR 122 (176)
T ss_dssp ----------------------------------------------CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCS
T ss_pred ----------------------------------------------CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecC
Confidence 566666666665 3333 555666666666666
Q ss_pred CCCccccChh----hcCCCCCcEEECCCccCC
Q 047128 182 NSFTRRIPES----IGVMTSLESIDFSTNQLS 209 (312)
Q Consensus 182 n~l~~~~p~~----~~~l~~L~~L~l~~N~l~ 209 (312)
|.++ .+|.. +..+++|+.|++++|.+.
T Consensus 123 N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 123 NPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp SGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 6665 44442 555666666666666554
No 129
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=3e-18 Score=159.79 Aligned_cols=252 Identities=13% Similarity=0.041 Sum_probs=109.5
Q ss_pred CCCCcCEEECCCCccc---ccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCC-cCCCCCC
Q 047128 3 SLTSLVWLRLGKNKLS---VDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLP-TRLCDLP 78 (312)
Q Consensus 3 ~l~~L~~L~L~~n~i~---~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~ 78 (312)
++++|++|+++..... ...+..+..+++|+.++++++... .+|..+. .+++|++|++++|.+++... ..+..++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~-~~~~L~~L~Ls~~~l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFP-FAAQIRKLDLLYALLETEDHCTLIQKCP 318 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGG-GGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHh-hcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence 3566677776543221 122334455556666666554333 4444433 45566666666665442211 1234555
Q ss_pred CCcEEEccCCCCC-cccchhhHhhcccccccccc-----------cccccccCCCCccceeeeeeeee----eecCcccc
Q 047128 79 FLQILDIADTNLS-GAIPNWINNLTGMVTSCSFT-----------RSVQQYLPLPIDVGVILVEKASV----VSKGEMVD 142 (312)
Q Consensus 79 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~l~l~~-----------n~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 142 (312)
+|++|+++ +.+. ...+.....+++|+.|++.+ +.++......+.........+.. ........
T Consensus 319 ~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~ 397 (592)
T 3ogk_B 319 NLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES 397 (592)
T ss_dssp TCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH
T ss_pred CCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH
Confidence 55555555 2222 11222234445555555552 22221000000000000000000 00011111
Q ss_pred hHHHhccccEEEcC----CCccccc-----CChhhhcCCCCCEEEccCCC--CccccChhh-cCCCCCcEEECCCccCCc
Q 047128 143 YEDILNLVRMIDIS----RNNFSGK-----IPLEVTNLKALHSLNFSYNS--FTRRIPESI-GVMTSLESIDFSTNQLSG 210 (312)
Q Consensus 143 ~~~~~~~L~~L~ls----~n~i~~~-----~p~~~~~l~~L~~L~Ls~n~--l~~~~p~~~-~~l~~L~~L~l~~N~l~~ 210 (312)
....+++|+.|+++ .|.+++. ++..+..+++|++|+++.|. +++..+..+ ..+++|++|++++|.+++
T Consensus 398 l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 477 (592)
T 3ogk_B 398 IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477 (592)
T ss_dssp HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSH
T ss_pred HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCH
Confidence 22235556666664 4455532 22224455666666665332 433333323 235566666666666654
Q ss_pred c-CCccccCCCCCCeEecccCccccc-CCCC-CCCCCCccccccCCCCCC
Q 047128 211 E-IPESMSSLTFSNHLNLSNNNLTGK-IPSS-TQLQSFDVSSFAGNDLCG 257 (312)
Q Consensus 211 ~-~p~~~~~l~~L~~L~l~~N~l~~~-~~~~-~~l~~l~~~~l~~n~l~~ 257 (312)
. ++..+..+++|++|++++|++++. ++.. ..+++|+.+++++|.+++
T Consensus 478 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 478 EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 2 233344556666666666665432 1111 234556666666665543
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.66 E-value=1.5e-16 Score=124.96 Aligned_cols=131 Identities=15% Similarity=0.140 Sum_probs=103.6
Q ss_pred cCCCCcEEEccCCcccccCCcCCCCCC-CCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeee
Q 047128 52 RFSRMVVLILRSNKFHGPLPTRLCDLP-FLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVE 130 (312)
Q Consensus 52 ~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~ 130 (312)
.+.+|+.|++++|+++ .+|. +..+. +|++|++++|.+++. ..+..
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~------------------------------ 62 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPL------------------------------ 62 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCC------------------------------
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--ccccc------------------------------
Confidence 5778888999999888 4454 44444 888889888888743 22222
Q ss_pred eeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccCh--hhcCCCCCcEEECCCccC
Q 047128 131 KASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPE--SIGVMTSLESIDFSTNQL 208 (312)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~l~~N~l 208 (312)
+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|. .+..+++|+.|++++|.+
T Consensus 63 ----------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 63 ----------------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp ----------------CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGG
T ss_pred ----------------CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCC
Confidence 445888999999999666566689999999999999997 6665 788899999999999999
Q ss_pred CccCCcc----ccCCCCCCeEecccCcccc
Q 047128 209 SGEIPES----MSSLTFSNHLNLSNNNLTG 234 (312)
Q Consensus 209 ~~~~p~~----~~~l~~L~~L~l~~N~l~~ 234 (312)
+ .+|.. +..+++|+.||+++|.+..
T Consensus 126 ~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 126 T-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp G-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred C-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 8 56664 7889999999999998753
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.65 E-value=2.3e-18 Score=138.16 Aligned_cols=154 Identities=19% Similarity=0.252 Sum_probs=85.8
Q ss_pred cCCCCCCEEECcCCCCCCCCCh------hHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcccchhhH
Q 047128 26 KNCTTLESLDVGENEFVGNIPT------WIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGAIPNWIN 99 (312)
Q Consensus 26 ~~l~~L~~L~l~~n~l~~~lp~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 99 (312)
.....++.++++++.+.+.+|. .+. .+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 3344455555555555544443 554 67777777777777774 55 6677777777777777776 4454444
Q ss_pred hhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEc
Q 047128 100 NLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNF 179 (312)
Q Consensus 100 ~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~L 179 (312)
.+++ |++|++++|++++ +| .+..+++|++|++
T Consensus 91 ~~~~----------------------------------------------L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 91 VADT----------------------------------------------LEELWISYNQIAS-LS-GIEKLVNLRVLYM 122 (198)
T ss_dssp HHHH----------------------------------------------CSEEEEEEEECCC-HH-HHHHHHHSSEEEE
T ss_pred cCCc----------------------------------------------CCEEECcCCcCCc-CC-ccccCCCCCEEEC
Confidence 4444 4455555555553 22 3455555555555
Q ss_pred cCCCCccccC-hhhcCCCCCcEEECCCccCCccCCc----------cccCCCCCCeEecccCccc
Q 047128 180 SYNSFTRRIP-ESIGVMTSLESIDFSTNQLSGEIPE----------SMSSLTFSNHLNLSNNNLT 233 (312)
Q Consensus 180 s~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~----------~~~~l~~L~~L~l~~N~l~ 233 (312)
++|++++..+ ..+..+++|++|++++|.+++..|. .+..+++|+.|| +|.++
T Consensus 123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 5555552111 2345555566666666655544332 145566666654 44443
No 132
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.64 E-value=5.8e-17 Score=151.11 Aligned_cols=252 Identities=10% Similarity=0.032 Sum_probs=142.2
Q ss_pred CCCCcCEEECCCCccccc----ccccccCCCCCCEEECcCCCCCC----CCChhHHhcCCCCcEEEccCCcccccCCc--
Q 047128 3 SLTSLVWLRLGKNKLSVD----ILVSLKNCTTLESLDVGENEFVG----NIPTWIGERFSRMVVLILRSNKFHGPLPT-- 72 (312)
Q Consensus 3 ~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l~~----~lp~~~~~~l~~L~~L~L~~n~l~~~~~~-- 72 (312)
++++|++|+|++|.+++. ++..+.++++|++|++++|.+.+ .++..+ ..+++|+.|++++|.+.+ ++.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~-l~~~~ 239 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA-RNCRSLVSVKVGDFEILE-LVGFF 239 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH-HHCTTCCEEECSSCBGGG-GHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH-hhCCCCcEEeccCccHHH-HHHHH
Confidence 467888888888887644 33344567778888888887761 222222 357778888887776653 222
Q ss_pred -------------------------CCCCCCCCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCC---Ccc
Q 047128 73 -------------------------RLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLP---IDV 124 (312)
Q Consensus 73 -------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~---~~~ 124 (312)
.+..+++|+.++++++.. ...|..+..+++|+.|++.+|.+....... ...
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence 233334444444444322 244555666667777777666543211000 000
Q ss_pred ce---------------------eeeeeeeeee---------------cCcccchHHHhccccEEEcCCCcccccCChhh
Q 047128 125 GV---------------------ILVEKASVVS---------------KGEMVDYEDILNLVRMIDISRNNFSGKIPLEV 168 (312)
Q Consensus 125 ~~---------------------~~~~~~~~~~---------------~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~ 168 (312)
.. .....+.... ..........+++|++|+++.|.+++..+..+
T Consensus 319 ~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l 398 (592)
T 3ogk_B 319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398 (592)
T ss_dssp TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred CCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence 00 0011111110 00112223445667777776666665555555
Q ss_pred hc-CCCCCEEEcc----CCCCccc-----cChhhcCCCCCcEEECCCc--cCCccCCcccc-CCCCCCeEecccCccccc
Q 047128 169 TN-LKALHSLNFS----YNSFTRR-----IPESIGVMTSLESIDFSTN--QLSGEIPESMS-SLTFSNHLNLSNNNLTGK 235 (312)
Q Consensus 169 ~~-l~~L~~L~Ls----~n~l~~~-----~p~~~~~l~~L~~L~l~~N--~l~~~~p~~~~-~l~~L~~L~l~~N~l~~~ 235 (312)
.. +++|++|+++ .|.+++. ++..+..+++|++|+++++ .+++..+..+. .+++|++|++++|++++.
T Consensus 399 ~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 478 (592)
T 3ogk_B 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE 478 (592)
T ss_dssp HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH
T ss_pred HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH
Confidence 44 7777777775 5566632 3333556778888888643 36655444443 478899999999988752
Q ss_pred -CCC-CCCCCCCccccccCCCCCC
Q 047128 236 -IPS-STQLQSFDVSSFAGNDLCG 257 (312)
Q Consensus 236 -~~~-~~~l~~l~~~~l~~n~l~~ 257 (312)
++. ...+++|+.+++++|.+++
T Consensus 479 ~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 479 GLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp HHHHHHTCCTTCCEEEEESCCCBH
T ss_pred HHHHHHhcCcccCeeeccCCCCcH
Confidence 222 2456888899999997653
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.63 E-value=2.7e-18 Score=137.69 Aligned_cols=152 Identities=18% Similarity=0.168 Sum_probs=111.0
Q ss_pred CCCcCEEECCCCcccccccc------cccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCC
Q 047128 4 LTSLVWLRLGKNKLSVDILV------SLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDL 77 (312)
Q Consensus 4 l~~L~~L~L~~n~i~~~~~~------~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 77 (312)
.+.++.++++.+.+++..|. .+..+++|++|++++|.++ .+| .+. .+++|+.|++++|+++ .+|..+..+
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLS-GMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-ccc-cCCCCCEEECCCCCcc-cccchhhcC
Confidence 45566677777777666555 7888888888888888888 577 554 7888888888888888 567666667
Q ss_pred CCCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCC
Q 047128 78 PFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISR 157 (312)
Q Consensus 78 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~ 157 (312)
++|++|++++|.+++ +| .+..+ ++|++|++++
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l----------------------------------------------~~L~~L~l~~ 124 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKL----------------------------------------------VNLRVLYMSN 124 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHH----------------------------------------------HHSSEEEESE
T ss_pred CcCCEEECcCCcCCc-CC-ccccC----------------------------------------------CCCCEEECCC
Confidence 888888888888874 33 34333 3477788888
Q ss_pred CcccccCC-hhhhcCCCCCEEEccCCCCccccCh----------hhcCCCCCcEEECCCccCC
Q 047128 158 NNFSGKIP-LEVTNLKALHSLNFSYNSFTRRIPE----------SIGVMTSLESIDFSTNQLS 209 (312)
Q Consensus 158 n~i~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~----------~~~~l~~L~~L~l~~N~l~ 209 (312)
|.+++..+ ..+..+++|++|++++|.+++..|. .+..+++|+.|| +|.++
T Consensus 125 N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 88874332 4677888888888888888755443 266788888876 66665
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.61 E-value=3.9e-15 Score=116.16 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=82.0
Q ss_pred cccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecc
Q 047128 149 LVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLS 228 (312)
Q Consensus 149 ~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 228 (312)
++++|++++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 48889999999998888899999999999999999997667778899999999999999997666679999999999999
Q ss_pred cCcccccCCCC
Q 047128 229 NNNLTGKIPSS 239 (312)
Q Consensus 229 ~N~l~~~~~~~ 239 (312)
+|++++.++..
T Consensus 111 ~N~~~c~c~~l 121 (170)
T 3g39_A 111 NNPWDCACSDI 121 (170)
T ss_dssp SSCBCTTBGGG
T ss_pred CCCCCCCchhH
Confidence 99999877643
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=7.6e-15 Score=126.91 Aligned_cols=103 Identities=11% Similarity=-0.063 Sum_probs=84.0
Q ss_pred hcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCChhhhcCCCCC-EEEc
Q 047128 101 LTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALH-SLNF 179 (312)
Q Consensus 101 l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~-~L~L 179 (312)
+++|+.+++..|.+.... ...|..+++|+.+++.+| ++...+.+|.++++|+ .+++
T Consensus 225 ~~~L~~l~L~~n~i~~I~----------------------~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIP----------------------DFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLEL 281 (329)
T ss_dssp CTTCCEEECTTBCCCEEC----------------------TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEE
T ss_pred cCCCeEEECCCCCcceec----------------------HhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEE
Confidence 566777777766655332 234556788999999998 8767788999999999 9999
Q ss_pred cCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEec
Q 047128 180 SYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNL 227 (312)
Q Consensus 180 s~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l 227 (312)
.+ .++...+.+|.++++|+.+++++|+++...+..|..+++|+.++.
T Consensus 282 ~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 282 PA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 98 777566788999999999999999999777779999999999874
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.57 E-value=1.6e-16 Score=139.53 Aligned_cols=170 Identities=16% Similarity=0.119 Sum_probs=85.6
Q ss_pred CCcCEEECCCCccccccccccc-----CCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCC-----
Q 047128 5 TSLVWLRLGKNKLSVDILVSLK-----NCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRL----- 74 (312)
Q Consensus 5 ~~L~~L~L~~n~i~~~~~~~l~-----~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~----- 74 (312)
++|++|+|++|.++......+. ..++|++|++++|.+++.....+...+++|+.|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4556666666666533222221 124566666666665532222333344556666666666543221211
Q ss_pred CCCCCCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEE
Q 047128 75 CDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMID 154 (312)
Q Consensus 75 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 154 (312)
...++|++|++++|.++......+. ..+...++|++|+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~------------------------------------------~~L~~~~~L~~L~ 189 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLM------------------------------------------EGLAGNTSVTHLS 189 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHH------------------------------------------HHHHTCSSCCEEE
T ss_pred hcCCccceeeCCCCCCChHHHHHHH------------------------------------------HHHhcCCCcCEEe
Confidence 2345566666666655422111110 1111234466777
Q ss_pred cCCCcccccC----ChhhhcCCCCCEEEccCCCCccc----cChhhcCCCCCcEEECCCccCCccCCccc
Q 047128 155 ISRNNFSGKI----PLEVTNLKALHSLNFSYNSFTRR----IPESIGVMTSLESIDFSTNQLSGEIPESM 216 (312)
Q Consensus 155 ls~n~i~~~~----p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~ 216 (312)
+++|.+++.. +..+...++|++|+|++|.++.. ++..+...++|++|++++|.|++.....+
T Consensus 190 Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 190 LLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp CTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 7777766432 34455566777777777777632 22334455677777777777764443333
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.57 E-value=1.5e-14 Score=113.31 Aligned_cols=91 Identities=20% Similarity=0.198 Sum_probs=80.5
Q ss_pred cccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecc
Q 047128 149 LVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLS 228 (312)
Q Consensus 149 ~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 228 (312)
+|++|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 48899999999998888899999999999999999996656667899999999999999996555668999999999999
Q ss_pred cCcccccCCCC
Q 047128 229 NNNLTGKIPSS 239 (312)
Q Consensus 229 ~N~l~~~~~~~ 239 (312)
+|++.+.++..
T Consensus 114 ~N~~~c~~~~~ 124 (174)
T 2r9u_A 114 NNPWDCECRDI 124 (174)
T ss_dssp SSCBCTTBGGG
T ss_pred CCCcccccccH
Confidence 99999876543
No 138
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.56 E-value=6.1e-16 Score=144.22 Aligned_cols=248 Identities=11% Similarity=-0.005 Sum_probs=146.0
Q ss_pred CCCCcCEEECCCCccccccccccc-CCCCCCEEECcCC-CCCCCCChhHHhcCCCCcEEEccCCcccccCCc----CCCC
Q 047128 3 SLTSLVWLRLGKNKLSVDILVSLK-NCTTLESLDVGEN-EFVGNIPTWIGERFSRMVVLILRSNKFHGPLPT----RLCD 76 (312)
Q Consensus 3 ~l~~L~~L~L~~n~i~~~~~~~l~-~l~~L~~L~l~~n-~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~ 76 (312)
++++|++|+|++|.+++..+..+. .+++|++|++++| .+.+.....+...+++|++|++++|.+++..+. ....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 367888899988888766666664 6889999999988 554222223334789999999999987754332 2346
Q ss_pred CCCCcEEEccCCC--CCc-ccchhhHhhcccccccccccc-ccc----------ccCCCCc-------------------
Q 047128 77 LPFLQILDIADTN--LSG-AIPNWINNLTGMVTSCSFTRS-VQQ----------YLPLPID------------------- 123 (312)
Q Consensus 77 l~~L~~L~l~~n~--l~~-~~~~~~~~l~~L~~l~l~~n~-~~~----------~~~~~~~------------------- 123 (312)
+++|++|++++|. +.. ..+.....+++|+.|++.+|. +.. .......
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 7789999999886 221 112223456888888888772 111 0000000
Q ss_pred --cceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCC-hhhhcCCCCCEEEccCCCCccc-cChhhcCCCCCc
Q 047128 124 --VGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP-LEVTNLKALHSLNFSYNSFTRR-IPESIGVMTSLE 199 (312)
Q Consensus 124 --~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p-~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~ 199 (312)
................++.....+++|++|++++|.+++... ..+..+++|++|++++| ++.. ++.....+++|+
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR 341 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence 000000011111222344455578899999999998764332 23557888999998887 4322 222234577888
Q ss_pred EEEC---------CCccCCccCCcccc-CCCCCCeEecccCcccccCCCC--CCCCCCcccccc
Q 047128 200 SIDF---------STNQLSGEIPESMS-SLTFSNHLNLSNNNLTGKIPSS--TQLQSFDVSSFA 251 (312)
Q Consensus 200 ~L~l---------~~N~l~~~~p~~~~-~l~~L~~L~l~~N~l~~~~~~~--~~l~~l~~~~l~ 251 (312)
+|++ +.+.+++.....+. .+++|++|++++|.+++..... ..+++|+.+++.
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 8887 33455543333332 3677778777777776422111 124555666655
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.56 E-value=2.9e-16 Score=146.45 Aligned_cols=90 Identities=12% Similarity=0.104 Sum_probs=65.9
Q ss_pred hHHHhccccEEEcCCCcccccCChhhhc-CCCCCEEEccCCCCccccChhh-cCCCCCcEEECCCccCCccCCc-cccCC
Q 047128 143 YEDILNLVRMIDISRNNFSGKIPLEVTN-LKALHSLNFSYNSFTRRIPESI-GVMTSLESIDFSTNQLSGEIPE-SMSSL 219 (312)
Q Consensus 143 ~~~~~~~L~~L~ls~n~i~~~~p~~~~~-l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~~p~-~~~~l 219 (312)
.+..+++|+.|++++ .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|++|++++|.+++.... ....+
T Consensus 427 l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l 505 (594)
T 2p1m_B 427 IVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKL 505 (594)
T ss_dssp HHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGG
T ss_pred HHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhC
Confidence 355677899999977 666555555554 7889999999988875544444 5678899999999988654443 34457
Q ss_pred CCCCeEecccCccc
Q 047128 220 TFSNHLNLSNNNLT 233 (312)
Q Consensus 220 ~~L~~L~l~~N~l~ 233 (312)
++|+.|++++|+++
T Consensus 506 ~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 506 ETMRSLWMSSCSVS 519 (594)
T ss_dssp GGSSEEEEESSCCB
T ss_pred CCCCEEeeeCCCCC
Confidence 88999999998874
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=3.2e-14 Score=110.98 Aligned_cols=59 Identities=24% Similarity=0.277 Sum_probs=34.0
Q ss_pred CCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcc
Q 047128 31 LESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGA 93 (312)
Q Consensus 31 L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 93 (312)
.+++++++|.++ .+|..+. ++|+.|++++|++++..|..|..+++|++|++++|++++.
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l 69 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred CCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc
Confidence 355666666666 5665432 5566666666666655455555566666666655555533
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=1.9e-13 Score=121.07 Aligned_cols=214 Identities=10% Similarity=-0.026 Sum_probs=121.8
Q ss_pred CcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEc
Q 047128 6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDI 85 (312)
Q Consensus 6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 85 (312)
+|+.+.+.++ ++.....+|.++ +|+.+.+.+ .++ .++...|.++.+|+.+++++|+++......|. ..+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence 5777777655 554555666664 577777765 555 66666666777777777777777744344444 567777777
Q ss_pred cCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcccccCC
Q 047128 86 ADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP 165 (312)
Q Consensus 86 ~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~p 165 (312)
..+ ++.+...+|.++++|+.+.+..+ +...-.. .|.. .+|+.+.+ .+.++....
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~----------------------aF~~-~~L~~i~l-p~~i~~I~~ 264 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQE----------------------AFRE-SGITTVKL-PNGVTNIAS 264 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTT----------------------TTTT-CCCSEEEE-ETTCCEECT
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccc----------------------cccc-CCccEEEe-CCCccEECh
Confidence 644 55455667777777777766543 2211111 1111 34666666 334544455
Q ss_pred hhhhcCCCCCEEEccCCCCc-----cccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC-
Q 047128 166 LEVTNLKALHSLNFSYNSFT-----RRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS- 239 (312)
Q Consensus 166 ~~~~~l~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~- 239 (312)
.+|.++++|+.+++.+|.+. ...+.+|.++++|+.+++.+ .++......|..+.+|+.+++..| ++......
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF 342 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF 342 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence 56666666666666665543 23344556666666666663 355344455666666666666443 33222222
Q ss_pred CCCCCCccccccCC
Q 047128 240 TQLQSFDVSSFAGN 253 (312)
Q Consensus 240 ~~l~~l~~~~l~~n 253 (312)
... +|+.+++.+|
T Consensus 343 ~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 343 NNT-GIKEVKVEGT 355 (401)
T ss_dssp SSS-CCCEEEECCS
T ss_pred CCC-CCCEEEEcCC
Confidence 223 5555555555
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=7.5e-14 Score=109.25 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=37.1
Q ss_pred CEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCcc
Q 047128 32 ESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSGA 93 (312)
Q Consensus 32 ~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 93 (312)
+.+++++|++. .+|..+. ++|+.|++++|++++..|..|..+++|++|++++|++++.
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i 72 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI 72 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc
Confidence 56677777766 6666542 5666677777776655566666666666666666666533
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.48 E-value=5.1e-13 Score=118.29 Aligned_cols=203 Identities=9% Similarity=0.052 Sum_probs=157.8
Q ss_pred CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047128 1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFL 80 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 80 (312)
|.+ .+|+.+.+.+ .++.....+|.++++|+.+++++|.++ .++...| ...+|+.+.+..+ ++......|.++++|
T Consensus 154 F~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF-~~~~L~~l~lp~~-l~~I~~~aF~~~~~L 228 (401)
T 4fdw_A 154 FFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTF-VYAGIEEVLLPVT-LKEIGSQAFLKTSQL 228 (401)
T ss_dssp TTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTT-TTCCCSEEECCTT-CCEECTTTTTTCTTC
T ss_pred cCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhE-eecccCEEEeCCc-hheehhhHhhCCCCC
Confidence 344 3699999986 677677788999999999999999999 8999888 4799999999855 665677789999999
Q ss_pred cEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhccccEEEcCCCcc
Q 047128 81 QILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF 160 (312)
Q Consensus 81 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~i 160 (312)
+.+++..+ ++.+...+|.+ .+|+.+.+. +.+... ....|..+++|+.+++.+|.+
T Consensus 229 ~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I----------------------~~~aF~~c~~L~~l~l~~~~~ 283 (401)
T 4fdw_A 229 KTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI----------------------ASRAFYYCPELAEVTTYGSTF 283 (401)
T ss_dssp CCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE----------------------CTTTTTTCTTCCEEEEESSCC
T ss_pred CEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE----------------------ChhHhhCCCCCCEEEeCCccc
Confidence 99999976 55566667777 678777763 222211 123455677899999988776
Q ss_pred c-----ccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCccccc
Q 047128 161 S-----GKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGK 235 (312)
Q Consensus 161 ~-----~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 235 (312)
. ...+.+|.++++|+.+.+. +.++.....+|.++++|+.+.+..| ++......|..+ +|+.+++++|.+...
T Consensus 284 ~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 284 NDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp CCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred cCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccc
Confidence 5 4566788999999999998 4576455677888999999999665 765666788888 999999999977654
Q ss_pred C
Q 047128 236 I 236 (312)
Q Consensus 236 ~ 236 (312)
.
T Consensus 361 ~ 361 (401)
T 4fdw_A 361 F 361 (401)
T ss_dssp C
T ss_pred c
Confidence 3
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.45 E-value=9.9e-15 Score=128.05 Aligned_cols=88 Identities=10% Similarity=0.141 Sum_probs=68.8
Q ss_pred hccccEEEcCCCccccc----CChhhhcCCCCCEEEccCCCCccc----cChhhcCCCCCcEEECCCccCCccC----Cc
Q 047128 147 LNLVRMIDISRNNFSGK----IPLEVTNLKALHSLNFSYNSFTRR----IPESIGVMTSLESIDFSTNQLSGEI----PE 214 (312)
Q Consensus 147 ~~~L~~L~ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~----p~ 214 (312)
.+.|+.|++++|.+++. ++..+...++|++|+|++|.++.. ++..+...++|++|++++|.+++.. ..
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 35699999999999753 344557789999999999999743 2455677789999999999998543 33
Q ss_pred cccCCCCCCeEecccCcccc
Q 047128 215 SMSSLTFSNHLNLSNNNLTG 234 (312)
Q Consensus 215 ~~~~l~~L~~L~l~~N~l~~ 234 (312)
.+...+.|++|++++|+|+.
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCH
T ss_pred HHHhCCCCCEEeccCCCCCH
Confidence 44567899999999999874
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.38 E-value=1.1e-12 Score=114.09 Aligned_cols=88 Identities=17% Similarity=0.187 Sum_probs=74.4
Q ss_pred cccEEEcCC-CcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEec
Q 047128 149 LVRMIDISR-NNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNL 227 (312)
Q Consensus 149 ~L~~L~ls~-n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l 227 (312)
+|+.|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..+..++ |+.|++
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence 488899986 999977778899999999999999999988888889999999999999999965555665555 999999
Q ss_pred ccCcccccCC
Q 047128 228 SNNNLTGKIP 237 (312)
Q Consensus 228 ~~N~l~~~~~ 237 (312)
++|+|.+.+.
T Consensus 111 ~~N~~~c~c~ 120 (347)
T 2ifg_A 111 SGNPLHCSCA 120 (347)
T ss_dssp CSSCCCCCGG
T ss_pred eCCCccCCCc
Confidence 9999987654
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=3e-12 Score=111.38 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=89.7
Q ss_pred EEEcCCC-cccccCChhhhcCCCCCEEEccC-CCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEeccc
Q 047128 152 MIDISRN-NFSGKIPLEVTNLKALHSLNFSY-NSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSN 229 (312)
Q Consensus 152 ~L~ls~n-~i~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 229 (312)
.++++++ +++ .+|. +..+++|++|+|++ |++++..+..|..+++|+.|+|++|+|++..|..|..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4788888 898 5777 99999999999996 999977778899999999999999999988888999999999999999
Q ss_pred CcccccCCCCCCCCCCccccccCCCCC
Q 047128 230 NNLTGKIPSSTQLQSFDVSSFAGNDLC 256 (312)
Q Consensus 230 N~l~~~~~~~~~l~~l~~~~l~~n~l~ 256 (312)
|+|++.++.......|+.+++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCcc
Confidence 999987776644444888999999654
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.07 E-value=4.6e-11 Score=104.02 Aligned_cols=169 Identities=14% Similarity=0.156 Sum_probs=91.4
Q ss_pred cccccCCCCCCEEECcCCCCC---------CCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCCc
Q 047128 22 LVSLKNCTTLESLDVGENEFV---------GNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLSG 92 (312)
Q Consensus 22 ~~~l~~l~~L~~L~l~~n~l~---------~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 92 (312)
..+...+++|+.|.+.+.... +.+...+ ..+++|+.|.+++|.-. .++. + .+++|++|++..+.+..
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll-~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~ 207 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVL-DAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPD 207 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHH-HTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHH-hcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCCh
Confidence 345566788999988765431 1244444 37899999999988411 2333 3 38899999999888764
Q ss_pred ccchhhH--hhccccccccccc--ccccccCCCCccceeeeeeeeeeecCcccchH--HHhccccEEEcCCCcccccCCh
Q 047128 93 AIPNWIN--NLTGMVTSCSFTR--SVQQYLPLPIDVGVILVEKASVVSKGEMVDYE--DILNLVRMIDISRNNFSGKIPL 166 (312)
Q Consensus 93 ~~~~~~~--~l~~L~~l~l~~n--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~n~i~~~~p~ 166 (312)
.....+. .+++|+.|++..+ ....... + ..+...+ ..+++|++|++.+|.+.+..+.
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~--~---------------~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~ 270 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGD--M---------------NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE 270 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSC--G---------------GGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchh--H---------------HHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence 4434443 5677777665321 1100000 0 0000000 1245566666666666533332
Q ss_pred hhh---cCCCCCEEEccCCCCccc----cChhhcCCCCCcEEECCCccCCcc
Q 047128 167 EVT---NLKALHSLNFSYNSFTRR----IPESIGVMTSLESIDFSTNQLSGE 211 (312)
Q Consensus 167 ~~~---~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~ 211 (312)
.+. .+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++..
T Consensus 271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 222 345666666666666532 222223456666666666665533
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.03 E-value=2.4e-09 Score=94.69 Aligned_cols=85 Identities=13% Similarity=0.031 Sum_probs=54.6
Q ss_pred hHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCC
Q 047128 143 YEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFS 222 (312)
Q Consensus 143 ~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L 222 (312)
.+..+.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++.....+|.++.+|+.+++..+ ++......|..+.+|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 3444566777777554 55455566777777777777543 55344556777777777777665 554445567777777
Q ss_pred CeEecccC
Q 047128 223 NHLNLSNN 230 (312)
Q Consensus 223 ~~L~l~~N 230 (312)
+.+++..+
T Consensus 369 ~~i~lp~~ 376 (394)
T 4fs7_A 369 KKVELPKR 376 (394)
T ss_dssp CEEEEEGG
T ss_pred CEEEECCC
Confidence 77777544
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.00 E-value=7e-10 Score=96.55 Aligned_cols=180 Identities=16% Similarity=0.198 Sum_probs=107.2
Q ss_pred CCCCEEECcCCCCCC-CC-------ChhHHhcCCCCcEEEccCCccc---------ccCCcCCCCCCCCcEEEccCCCCC
Q 047128 29 TTLESLDVGENEFVG-NI-------PTWIGERFSRMVVLILRSNKFH---------GPLPTRLCDLPFLQILDIADTNLS 91 (312)
Q Consensus 29 ~~L~~L~l~~n~l~~-~l-------p~~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~ 91 (312)
..++.|.+......+ .. ...+. .+++|+.|.+...... +.+...+..+|+|+.|++++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~-~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKE-KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHH-HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhh-hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 356777777665432 21 12232 6789999999765331 113333567899999999987311
Q ss_pred cccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchH--HHhccccEEEcCC--Cccccc----
Q 047128 92 GAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYE--DILNLVRMIDISR--NNFSGK---- 163 (312)
Q Consensus 92 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~--n~i~~~---- 163 (312)
..+. + .+++|+.|.+..+.+... ....+ ..+++|+.|+|+. |...+.
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~~----------------------~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPDS----------------------VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCHH----------------------HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred -eecc-c-cCCCCcEEEEecCCCChH----------------------HHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 2222 2 367788877766554311 00111 1367788888753 221111
Q ss_pred -CChhh--hcCCCCCEEEccCCCCccccChhh---cCCCCCcEEECCCccCCccC----CccccCCCCCCeEecccCccc
Q 047128 164 -IPLEV--TNLKALHSLNFSYNSFTRRIPESI---GVMTSLESIDFSTNQLSGEI----PESMSSLTFSNHLNLSNNNLT 233 (312)
Q Consensus 164 -~p~~~--~~l~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~l~~N~l~~~~----p~~~~~l~~L~~L~l~~N~l~ 233 (312)
+...+ ..+++|++|++++|.+....+..+ ..+++|++|+++.|.+++.. +..+..+++|+.|++++|.++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 11122 246889999998888764333333 24678899999888888643 333345688888999888776
Q ss_pred c
Q 047128 234 G 234 (312)
Q Consensus 234 ~ 234 (312)
.
T Consensus 321 d 321 (362)
T 2ra8_A 321 D 321 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.97 E-value=1.1e-08 Score=90.32 Aligned_cols=108 Identities=7% Similarity=0.019 Sum_probs=72.5
Q ss_pred CCCCCCcCEEECCCCcccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCc---------------
Q 047128 1 MGSLTSLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK--------------- 65 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~--------------- 65 (312)
|.+|++|+++.|..+ ++.....+|.++++|+.+++.++ ++ .++...|.++..|+.+.+..+-
T Consensus 67 F~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred hhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCceeeecceeeecccccc
Confidence 567888999999754 66566678899999999999765 55 6776666677777766554321
Q ss_pred ------ccccCCcCCCCCCCCcEEEccCCCCCcccchhhHhhccccccccccc
Q 047128 66 ------FHGPLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTR 112 (312)
Q Consensus 66 ------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n 112 (312)
........|..+.+|+.+.+..+. .......|..+.+|+.+.+..+
T Consensus 144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 144 ITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT
T ss_pred cccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC
Confidence 111123457777888888887653 3255567777777777766443
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.80 E-value=1.2e-07 Score=83.79 Aligned_cols=107 Identities=15% Similarity=0.183 Sum_probs=61.2
Q ss_pred hHHHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCC
Q 047128 143 YEDILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFS 222 (312)
Q Consensus 143 ~~~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L 222 (312)
.|..+..|+.+.+..+..+ ....+|.++..|+.+.+. +.++.....+|.++.+|+.+++..+ ++......|..+.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 4455666777777654433 445566677777777775 3344334455666777777777654 553444567777777
Q ss_pred CeEecccCcccccCCCC-CCCCCCccccccCC
Q 047128 223 NHLNLSNNNLTGKIPSS-TQLQSFDVSSFAGN 253 (312)
Q Consensus 223 ~~L~l~~N~l~~~~~~~-~~l~~l~~~~l~~n 253 (312)
+.+.+..+ ++..-... ....+|+..++.++
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 77777543 33221111 33455555555554
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.71 E-value=8.3e-09 Score=81.19 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=19.0
Q ss_pred cCCCCcEEEccCC-ccccc----CCcCCCCCCCCcEEEccCCCCC
Q 047128 52 RFSRMVVLILRSN-KFHGP----LPTRLCDLPFLQILDIADTNLS 91 (312)
Q Consensus 52 ~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 91 (312)
..++|++|++++| .+... +...+...++|++|++++|.+.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 3455555555555 44421 2223344455555555555544
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.71 E-value=6.6e-09 Score=81.77 Aligned_cols=113 Identities=16% Similarity=0.105 Sum_probs=87.6
Q ss_pred CCCCCcCEEECCCC-ccccc----ccccccCCCCCCEEECcCCCCCCCC----ChhHHhcCCCCcEEEccCCccccc---
Q 047128 2 GSLTSLVWLRLGKN-KLSVD----ILVSLKNCTTLESLDVGENEFVGNI----PTWIGERFSRMVVLILRSNKFHGP--- 69 (312)
Q Consensus 2 ~~l~~L~~L~L~~n-~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~l----p~~~~~~l~~L~~L~L~~n~l~~~--- 69 (312)
...+.|++|+|++| .+... +...+...++|++|++++|.+.+.. ...+. ..++|++|+|++|.++..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~-~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK-VNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH-HCSSCCEEECCSSCCCHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH-hCCCcCEEECcCCcCCHHHHH
Confidence 45789999999999 88643 4456777899999999999998432 23333 568999999999999843
Q ss_pred -CCcCCCCCCCCcEEEc--cCCCCCccc----chhhHhhcccccccccccccc
Q 047128 70 -LPTRLCDLPFLQILDI--ADTNLSGAI----PNWINNLTGMVTSCSFTRSVQ 115 (312)
Q Consensus 70 -~~~~~~~l~~L~~L~l--~~n~l~~~~----~~~~~~l~~L~~l~l~~n~~~ 115 (312)
+...+...+.|++|++ ++|.+.... ...+...+.|+.|++..|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3456677889999999 889987543 345566688999999988775
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.67 E-value=6e-07 Score=79.18 Aligned_cols=240 Identities=9% Similarity=0.033 Sum_probs=131.1
Q ss_pred CCCC-CcCEEECCCCcccccccccccCCCCCCEEECcCCC---CCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCC
Q 047128 2 GSLT-SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENE---FVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDL 77 (312)
Q Consensus 2 ~~l~-~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~---l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 77 (312)
.++. .|+.+.+.++ ++..-..+|.++.+|+.+.+..|. ++ .++...|.++.+|+.+.+..+ ++......|..+
T Consensus 60 ~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c 136 (394)
T 4gt6_A 60 CNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHC 136 (394)
T ss_dssp TTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTC
T ss_pred cCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhh
Confidence 4443 4777777654 555566778888888888887653 55 666666666777777766554 333444557777
Q ss_pred CCCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeec--CcccchHHH---------
Q 047128 78 PFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSK--GEMVDYEDI--------- 146 (312)
Q Consensus 78 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--------- 146 (312)
.+|+.+.+..+. ..+....|.....|+.+.+..+ +.......+... .+........ ......+..
T Consensus 137 ~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~--~l~~i~ip~~~~~i~~~af~~c~~l~~~~~ 212 (394)
T 4gt6_A 137 EELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGT--ALTQIHIPAKVTRIGTNAFSECFALSTITS 212 (394)
T ss_dssp TTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC--CCSEEEECTTCCEECTTTTTTCTTCCEEEE
T ss_pred ccccccccccee-eeecccceecccccccccccce-eeEecccccccc--ceeEEEECCcccccccchhhhccccceecc
Confidence 777777776442 3244445666666655554322 111111111000 0000000000 000000011
Q ss_pred ----------------------------hccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCC
Q 047128 147 ----------------------------LNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSL 198 (312)
Q Consensus 147 ----------------------------~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 198 (312)
...+..+.+.. .++.....+|.++..|+.+.+..+..+ ....+|..+++|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L 290 (394)
T 4gt6_A 213 DSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPAL 290 (394)
T ss_dssp CCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTC
T ss_pred cccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCccccccccc
Confidence 11222233322 233344557888899999998766543 555677888999
Q ss_pred cEEECCCccCCccCCccccCCCCCCeEecccCcccccCCCC-CCCCCCccccccC
Q 047128 199 ESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIPSS-TQLQSFDVSSFAG 252 (312)
Q Consensus 199 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~l~~ 252 (312)
+.+.+. +.++......|..+.+|+.+++..+ ++..-... ....+|+.+.+..
T Consensus 291 ~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~ 343 (394)
T 4gt6_A 291 QDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS 343 (394)
T ss_dssp CEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT
T ss_pred ccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc
Confidence 999996 4566455567888999999999764 33322222 3345555555543
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.59 E-value=9.5e-09 Score=85.15 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=61.5
Q ss_pred cCCCCCCEEECcCCCCCC--CCChhHHhcCCCCcEEEccCCcccccCCcCCCCCC--CCcEEEccCCCCCcccc------
Q 047128 26 KNCTTLESLDVGENEFVG--NIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLP--FLQILDIADTNLSGAIP------ 95 (312)
Q Consensus 26 ~~l~~L~~L~l~~n~l~~--~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~------ 95 (312)
.++++|+.|+|++|++++ .+|..+. .+++|+.|+|++|++++. ..+..+. +|++|++++|.+.+..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~-~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQ-KAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHH-HSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHh-hCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 568899999999999994 3334444 899999999999999954 2333344 89999999999986554
Q ss_pred -hhhHhhccccccc
Q 047128 96 -NWINNLTGMVTSC 108 (312)
Q Consensus 96 -~~~~~l~~L~~l~ 108 (312)
..+..+++|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 3467788887765
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.55 E-value=9.8e-08 Score=79.05 Aligned_cols=67 Identities=25% Similarity=0.363 Sum_probs=41.8
Q ss_pred hcCCCCCEEEccCCCCcc--ccChhhcCCCCCcEEECCCccCCccCCccccCCC--CCCeEecccCcccccCC
Q 047128 169 TNLKALHSLNFSYNSFTR--RIPESIGVMTSLESIDFSTNQLSGEIPESMSSLT--FSNHLNLSNNNLTGKIP 237 (312)
Q Consensus 169 ~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~--~L~~L~l~~N~l~~~~~ 237 (312)
.++++|++|+|++|++++ .+|..+..+++|+.|+|++|++++. +.+..+. +|++|++++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 456777777777777764 3345555677777777777777643 2233333 67777777777766444
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.50 E-value=5.8e-06 Score=72.36 Aligned_cols=84 Identities=14% Similarity=0.104 Sum_probs=55.3
Q ss_pred HHhccccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCe
Q 047128 145 DILNLVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNH 224 (312)
Q Consensus 145 ~~~~~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~ 224 (312)
.....|+.+.+..+ ++.....+|.++.+|+.+.+..+ ++......|.++++|+.+.+.++.++......|..+.+|+.
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence 34455666666554 44344556667777777777543 44234456677788888888888777555567888888888
Q ss_pred EecccC
Q 047128 225 LNLSNN 230 (312)
Q Consensus 225 L~l~~N 230 (312)
+++..+
T Consensus 315 i~lp~~ 320 (379)
T 4h09_A 315 VTLPTA 320 (379)
T ss_dssp EECCTT
T ss_pred EEcCcc
Confidence 888654
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.27 E-value=1.6e-05 Score=69.45 Aligned_cols=177 Identities=10% Similarity=0.046 Sum_probs=106.3
Q ss_pred CCCCCCcCEEECCCCcccc------------cccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCcccc
Q 047128 1 MGSLTSLVWLRLGKNKLSV------------DILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHG 68 (312)
Q Consensus 1 ~~~l~~L~~L~L~~n~i~~------------~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~ 68 (312)
|..+..++...+..+.... .....+.....+..+.+....- .+....+....+|+.+.+..+ ++.
T Consensus 154 f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~ 230 (379)
T 4h09_A 154 GYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTT 230 (379)
T ss_dssp TTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCE
T ss_pred hcccccccccccccccceeecccceecccccceecccccccccccccccccee--EEeecccccccccceeeeccc-eeE
Confidence 3456777777776543321 1223445566677776655432 333344447788999988765 343
Q ss_pred cCCcCCCCCCCCcEEEccCCCCCcccchhhHhhcccccccccccccccccCCCCccceeeeeeeeeeecCcccchHHHhc
Q 047128 69 PLPTRLCDLPFLQILDIADTNLSGAIPNWINNLTGMVTSCSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILN 148 (312)
Q Consensus 69 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (312)
.....|..+..|+.+.+..+ ++.+...+|.....
T Consensus 231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~--------------------------------------------- 264 (379)
T 4h09_A 231 LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTA--------------------------------------------- 264 (379)
T ss_dssp ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTT---------------------------------------------
T ss_pred EccccccCCccceEEEcCCC-ccEeCccccceeeh---------------------------------------------
Confidence 55667888999999988765 44344445555554
Q ss_pred cccEEEcCCCcccccCChhhhcCCCCCEEEccCCCCccccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecc
Q 047128 149 LVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNSFTRRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLS 228 (312)
Q Consensus 149 ~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 228 (312)
|+.+.+..+ +......+|.++.+|+.+.+.++.++.....+|.++.+|+.+.+..+ ++......|..+.+|+.+.+.
T Consensus 265 -l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 265 -LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp -CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred -hcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 444444332 33344456667777777777766666444556667777777777644 553444566677777776664
Q ss_pred c
Q 047128 229 N 229 (312)
Q Consensus 229 ~ 229 (312)
.
T Consensus 342 ~ 342 (379)
T 4h09_A 342 K 342 (379)
T ss_dssp T
T ss_pred C
Confidence 3
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.18 E-value=4.3e-07 Score=70.04 Aligned_cols=83 Identities=8% Similarity=0.019 Sum_probs=53.4
Q ss_pred CcCEEECCCCcccccccccccCCCCCCEEECcCCC-CCCCCChhHHhcC----CCCcEEEccCCc-ccccCCcCCCCCCC
Q 047128 6 SLVWLRLGKNKLSVDILVSLKNCTTLESLDVGENE-FVGNIPTWIGERF----SRMVVLILRSNK-FHGPLPTRLCDLPF 79 (312)
Q Consensus 6 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~-l~~~lp~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~ 79 (312)
+|+.||++++.|+..--..+.++++|++|+|++|. +++.--..+. .+ ++|++|++++|. ++...-..+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~-~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS-QLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHH-TCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHH-hcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 47788888888776555667778888888888874 5522222232 22 367888888764 65332234566778
Q ss_pred CcEEEccCCC
Q 047128 80 LQILDIADTN 89 (312)
Q Consensus 80 L~~L~l~~n~ 89 (312)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888887764
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=6.5e-07 Score=69.01 Aligned_cols=83 Identities=10% Similarity=0.055 Sum_probs=67.4
Q ss_pred cccEEEcCCCcccccCChhhhcCCCCCEEEccCCC-CccccChhhcCC----CCCcEEECCCcc-CCccCCccccCCCCC
Q 047128 149 LVRMIDISRNNFSGKIPLEVTNLKALHSLNFSYNS-FTRRIPESIGVM----TSLESIDFSTNQ-LSGEIPESMSSLTFS 222 (312)
Q Consensus 149 ~L~~L~ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~l~~N~-l~~~~p~~~~~l~~L 222 (312)
.|+.||++++.+++.--..+..+++|++|+|++|. ++..--..+..+ ++|++|++++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 58999999999987666778899999999999995 774443445543 479999999984 886655667889999
Q ss_pred CeEecccCc
Q 047128 223 NHLNLSNNN 231 (312)
Q Consensus 223 ~~L~l~~N~ 231 (312)
++|++++++
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999885
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.69 E-value=7.3e-05 Score=54.74 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=40.9
Q ss_pred EEEccCCCCc-cccChhhcCCCCCcEEECCCccCCccCCccccCCCCCCeEecccCcccccCC
Q 047128 176 SLNFSYNSFT-RRIPESIGVMTSLESIDFSTNQLSGEIPESMSSLTFSNHLNLSNNNLTGKIP 237 (312)
Q Consensus 176 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~ 237 (312)
.++.+++.++ ..+|..+ .++|++|+|++|+|+...+..|..+++|+.|+|++|++.+...
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 5666777664 2455432 2467888888888885555567778888888888888876543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.49 E-value=0.00011 Score=57.61 Aligned_cols=111 Identities=13% Similarity=0.094 Sum_probs=77.9
Q ss_pred CCCCcCEEECCCC-ccccc----ccccccCCCCCCEEECcCCCCCCC----CChhHHhcCCCCcEEEccCCccccc----
Q 047128 3 SLTSLVWLRLGKN-KLSVD----ILVSLKNCTTLESLDVGENEFVGN----IPTWIGERFSRMVVLILRSNKFHGP---- 69 (312)
Q Consensus 3 ~l~~L~~L~L~~n-~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~----lp~~~~~~l~~L~~L~L~~n~l~~~---- 69 (312)
+-+.|++|+|++| .|... +.+.+..-+.|++|+|++|++.+. +...+. .-+.|++|+|++|.|...
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~-~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE-TSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH-HCSSCCEEECCSSBCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh-cCCccCeEecCCCcCCHHHHHH
Confidence 3468999999986 88632 456677788999999999999843 233333 458999999999999842
Q ss_pred CCcCCCCCCCCcEEEccCCC---CCcc----cchhhHhhccccccccccccc
Q 047128 70 LPTRLCDLPFLQILDIADTN---LSGA----IPNWINNLTGMVTSCSFTRSV 114 (312)
Q Consensus 70 ~~~~~~~l~~L~~L~l~~n~---l~~~----~~~~~~~l~~L~~l~l~~n~~ 114 (312)
+...+..-..|++|++++|. +... +.+.+..-+.|+.+++..+..
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 23345666779999998753 3322 334555666777777765543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.34 E-value=0.00046 Score=50.40 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=28.8
Q ss_pred EEECcCCCCC-CCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCCCCC
Q 047128 33 SLDVGENEFV-GNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADTNLS 91 (312)
Q Consensus 33 ~L~l~~n~l~-~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 91 (312)
+++-+++.++ ..+|..+. ++++.|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp---~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP---VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC---TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC---cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555543 24444322 34555666666655433444555556666666666543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.27 E-value=0.00024 Score=55.73 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=60.1
Q ss_pred hccccEEEcCCC-ccccc----CChhhhcCCCCCEEEccCCCCccc----cChhhcCCCCCcEEECCCccCCccC----C
Q 047128 147 LNLVRMIDISRN-NFSGK----IPLEVTNLKALHSLNFSYNSFTRR----IPESIGVMTSLESIDFSTNQLSGEI----P 213 (312)
Q Consensus 147 ~~~L~~L~ls~n-~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~----p 213 (312)
-+.|+.|++++| .|... +.+++..-..|++|+|++|.+... +...+..-++|++|+|++|.|+... -
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 456889999885 77643 334555667899999999998732 3344556688999999999998553 3
Q ss_pred ccccCCCCCCeEecccC
Q 047128 214 ESMSSLTFSNHLNLSNN 230 (312)
Q Consensus 214 ~~~~~l~~L~~L~l~~N 230 (312)
+.+.....|++|++++|
T Consensus 120 ~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTTTCCCSEEECCCC
T ss_pred HHHhhCCceeEEECCCC
Confidence 34556677999999865
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=80.33 E-value=3.6 Score=27.87 Aligned_cols=48 Identities=13% Similarity=-0.002 Sum_probs=34.5
Q ss_pred cccccccccccCCCCCCEEECcCCCCCCCCChhHHhcCCCCcEEEccCCc
Q 047128 16 KLSVDILVSLKNCTTLESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK 65 (312)
Q Consensus 16 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~L~~n~ 65 (312)
.++.+...+|.++..|+.+.+..+ ++ .|....|.++.+|+.+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECCSC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcCCC
Confidence 455555677888888888888775 55 6777666678888888876543
No 166
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=77.64 E-value=0.4 Score=27.07 Aligned_cols=24 Identities=8% Similarity=-0.045 Sum_probs=10.9
Q ss_pred EEEeehhhHHHHHHHhhhheeeec
Q 047128 287 LYVSATLGFVVGFWCFMRPLLVRR 310 (312)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
+..+++.|++++.++++.+++|+|
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~R 36 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMR 36 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444444
No 167
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=75.80 E-value=0.4 Score=25.02 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=16.9
Q ss_pred EeehhhHHHHHHHhhhheeeec
Q 047128 289 VSATLGFVVGFWCFMRPLLVRR 310 (312)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
+.+++|++|++.++..-|+|||
T Consensus 10 lt~i~gl~vif~~lg~tflywr 31 (40)
T 2l9u_A 10 LTVIAGLVVIFMMLGGTFLYWR 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCceeEEEc
Confidence 4567788888888888888876
No 168
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=68.32 E-value=6.3 Score=26.62 Aligned_cols=49 Identities=8% Similarity=-0.008 Sum_probs=36.3
Q ss_pred CCCCCCCCChhHHhcCCCCcEEEccCCcccccCCcCCCCCCCCcEEEccCC
Q 047128 38 ENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTRLCDLPFLQILDIADT 88 (312)
Q Consensus 38 ~n~l~~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 88 (312)
+..++ .|....|.++.+|+.+.+-.+ ++.+-...|..+.+|+.+.+...
T Consensus 5 g~~vt-~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVV-GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCC-SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccC-EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34566 777777778889999988765 34355667888899988888754
No 169
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=66.62 E-value=1.3 Score=25.00 Aligned_cols=23 Identities=9% Similarity=-0.071 Sum_probs=9.9
Q ss_pred EEeehhhHHHHHHHhhhheeeec
Q 047128 288 YVSATLGFVVGFWCFMRPLLVRR 310 (312)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
..+++.|++++.++++.+++|+|
T Consensus 13 A~gVVgGv~~v~ii~~~~~~~~R 35 (44)
T 2l2t_A 13 AAGVIGGLFILVIVGLTFAVYVR 35 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeehHHHHHHHHHHHHHHHHhh
Confidence 33344434444444444444444
No 170
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=64.97 E-value=1.3 Score=24.04 Aligned_cols=11 Identities=27% Similarity=0.682 Sum_probs=5.2
Q ss_pred EeehhhHHHHH
Q 047128 289 VSATLGFVVGF 299 (312)
Q Consensus 289 ~~~~~~~~~~~ 299 (312)
.+++++.++++
T Consensus 14 AGiVvG~v~gv 24 (38)
T 2k1k_A 14 VAVIFGLLLGA 24 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred eeeehHHHHHH
Confidence 44455554443
No 171
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=55.10 E-value=4.2 Score=22.31 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=10.7
Q ss_pred EEEeehhhHHHHHHHhhhheeeecc
Q 047128 287 LYVSATLGFVVGFWCFMRPLLVRRR 311 (312)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
+..+++.|+++...+++.+++++||
T Consensus 15 I~~~vv~Gv~ll~~iv~~~~~~~rR 39 (41)
T 2k9y_A 15 VIGGVAVGVVLLLVLAGVGFFIHRR 39 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred EEeehhHHHHHHHHHHHHheeEeee
Confidence 4444445555444133333444443
No 172
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=44.31 E-value=6.7 Score=21.69 Aligned_cols=19 Identities=11% Similarity=0.317 Sum_probs=10.4
Q ss_pred hhHHHHHHHhhhheeeecc
Q 047128 293 LGFVVGFWCFMRPLLVRRR 311 (312)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~ 311 (312)
.++++..++++.++..+||
T Consensus 25 ~gVai~~vIVvsl~mlRrr 43 (43)
T 2llm_A 25 GGVVIATVIVITLVMLKKK 43 (43)
Confidence 3444444556666666664
No 173
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=35.59 E-value=9.4 Score=19.91 Aligned_cols=23 Identities=13% Similarity=0.001 Sum_probs=11.8
Q ss_pred EeehhhHHHHHHHhhhheeeecc
Q 047128 289 VSATLGFVVGFWCFMRPLLVRRR 311 (312)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
.+++++-+++++.+...+++++|
T Consensus 10 aGIVvgdi~~t~~i~~~vy~~~r 32 (33)
T 2l34_A 10 AGIVVGDLVLTVLIALAVYFLGR 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EeEeHHHHHHHHHHHHHHhheec
Confidence 34555555555555555555443
No 174
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=34.09 E-value=7.1 Score=20.68 Aligned_cols=7 Identities=43% Similarity=0.971 Sum_probs=2.7
Q ss_pred heeeecc
Q 047128 305 PLLVRRR 311 (312)
Q Consensus 305 ~~~~~~~ 311 (312)
.++++||
T Consensus 28 ~~~iRRr 34 (35)
T 1iij_A 28 GILIKRR 34 (35)
T ss_dssp THHHHHC
T ss_pred heEEeec
Confidence 3333443
No 175
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=33.61 E-value=8.8 Score=32.06 Aligned_cols=8 Identities=38% Similarity=0.330 Sum_probs=0.0
Q ss_pred heeeeccC
Q 047128 305 PLLVRRRW 312 (312)
Q Consensus 305 ~~~~~~~w 312 (312)
.++++|||
T Consensus 302 ~~~~~~~~ 309 (315)
T 1cd1_A 302 YYIWRRRS 309 (315)
T ss_dssp --------
T ss_pred Hhheehhc
Confidence 55667665
No 176
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=31.72 E-value=14 Score=19.88 Aligned_cols=19 Identities=5% Similarity=0.067 Sum_probs=8.1
Q ss_pred hhhHHHHHHHhhhheeeec
Q 047128 292 TLGFVVGFWCFMRPLLVRR 310 (312)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~ 310 (312)
.+.+++.++.+|..++.|+
T Consensus 15 lal~vi~iisLIiLi~~w~ 33 (39)
T 2l6w_A 15 LALVVLTIISLIILIMLWQ 33 (39)
Confidence 3333333344444444444
No 177
>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth factor, hormone/growth factor complex; HET: 1PE; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 1exz_A 2e9w_C* 2o27_A 2o26_A
Probab=23.42 E-value=17 Score=28.69 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=0.0
Q ss_pred CCCCcCCccceEEEeehhhHHHHHHHhhhheeeec
Q 047128 276 GDEDEDEVDHWLYVSATLGFVVGFWCFMRPLLVRR 310 (312)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
.+.-.+....|..+++...+.+++.++++++|+.+
T Consensus 205 ~~~~~~~slq~~~~~l~al~slvigf~~ga~~wk~ 239 (273)
T 1scf_A 205 KNPPGDSSLHWAAMALPALFSLIIGFAFGALYWKK 239 (273)
T ss_dssp -----------------------------------
T ss_pred cCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34445556677777666666666666666666444
No 178
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=27.00 E-value=20 Score=17.54 Aligned_cols=16 Identities=19% Similarity=0.546 Sum_probs=10.9
Q ss_pred ceEEEeehhhHHHHHH
Q 047128 285 HWLYVSATLGFVVGFW 300 (312)
Q Consensus 285 ~~~~~~~~~~~~~~~~ 300 (312)
.|+.+++++|+.++-+
T Consensus 3 g~l~iavvlGa~~Gyf 18 (26)
T 2ls4_A 3 GYLCIAVAAGAGTGYF 18 (26)
Confidence 4667777777777653
No 179
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=20.29 E-value=30 Score=29.13 Aligned_cols=20 Identities=15% Similarity=0.389 Sum_probs=11.6
Q ss_pred hhHHHHHHHhhhheeeeccC
Q 047128 293 LGFVVGFWCFMRPLLVRRRW 312 (312)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~w 312 (312)
+++.+++.++.+++..||+|
T Consensus 319 l~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 319 MALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 34444444555566677888
Done!