BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047129
         (126 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
 pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
          Length = 436

 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 28/136 (20%)

Query: 9   FQIPGILFYKNNPSSS--------PTVQKEKIPLWWIAS----------------EGILF 44
           F  P + FY+   SS+          + +  +P + +A                 EG+LF
Sbjct: 36  FHTPSVYFYRPTGSSNFFDAKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLF 95

Query: 45  LKAEANFKLEQLGDAVQPPYPYLEQLLCNVPGSQGILGCPLLLIQVT--RCGGFILALRF 102
           ++AE++  ++  GD    P   L +L+  V  SQGI    LL++QVT  +CGG  L +  
Sbjct: 96  VEAESDGVVDDFGDFA--PTLELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGM 153

Query: 103 NHTMCDAIGLVQFLKT 118
            H   D    + F+ +
Sbjct: 154 RHHAADGFSGLHFINS 169


>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
           (Crystal Form 2)
          Length = 439

 Score = 45.8 bits (107), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 28/136 (20%)

Query: 9   FQIPGILFYKNNPSSS--------PTVQKEKIPLWWIAS----------------EGILF 44
           F  P + FY+   SS+          + +  +P + +A                 EG+LF
Sbjct: 39  FHTPSVYFYRPTGSSNFFDAKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLF 98

Query: 45  LKAEANFKLEQLGDAVQPPYPYLEQLLCNVPGSQGILGCPLLLIQVT--RCGGFILALRF 102
           ++AE++  ++  GD    P   L +L+  V  SQGI    LL++QVT  +CGG  L +  
Sbjct: 99  VEAESDGVVDDFGDFA--PTLELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGM 156

Query: 103 NHTMCDAIGLVQFLKT 118
            H   D    + F+ +
Sbjct: 157 RHHAADGFSGLHFINS 172


>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
           (Crystal Form 1)
 pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
           (Crystal Form 1)
          Length = 439

 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 28/136 (20%)

Query: 9   FQIPGILFYKNNPSSS--------PTVQKEKIPLWWIAS----------------EGILF 44
           F  P + FY+   SS+          + +  +P + +A                 EG+LF
Sbjct: 39  FHTPSVYFYRPTGSSNFFDAKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLF 98

Query: 45  LKAEANFKLEQLGDAVQPPYPYLEQLLCNVPGSQGILGCPLLLIQVT--RCGGFILALRF 102
           ++AE++  ++  GD    P   L +L+  V  SQGI    LL++QVT  + GG  L +  
Sbjct: 99  VEAESDGVVDDFGDFA--PTLELRRLIPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGM 156

Query: 103 NHTMCDAIGLVQFLKT 118
            H   D    + F+ +
Sbjct: 157 RHHAADGFSGLHFINS 172


>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
          Length = 295

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 18  KNNPSSSPTVQKEKIPLWWIASEGILFLK 46
           +++P ++ T +  KIP+ W A E I F K
Sbjct: 175 EDDPEAAYTTRGGKIPIRWTAPEAIAFRK 203


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.142    0.453 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,856,630
Number of Sequences: 62578
Number of extensions: 141206
Number of successful extensions: 257
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 4
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)