Query 047130
Match_columns 815
No_of_seqs 333 out of 2175
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 07:56:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 5E-152 1E-156 1363.9 83.1 758 42-814 18-798 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 1E-126 3E-131 1126.6 56.0 752 49-813 4-767 (769)
3 PRK03562 glutathione-regulated 100.0 1.1E-47 2.4E-52 450.9 44.1 409 73-515 5-420 (621)
4 PRK10669 putative cation:proto 100.0 2.6E-47 5.6E-52 446.4 43.7 378 74-475 7-392 (558)
5 PRK03659 glutathione-regulated 100.0 3.3E-46 7.1E-51 437.9 44.8 411 74-515 6-420 (601)
6 COG0475 KefB Kef-type K+ trans 100.0 2.3E-45 4.9E-50 409.4 43.3 380 73-474 6-387 (397)
7 PRK05326 potassium/proton anti 100.0 7.4E-40 1.6E-44 383.2 37.1 385 71-475 4-391 (562)
8 TIGR00932 2a37 transporter, mo 100.0 1.4E-35 3.1E-40 317.2 31.0 271 83-373 2-273 (273)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 3E-39 6.4E-44 362.4 -4.5 374 80-472 3-379 (380)
10 COG4651 RosB Kef-type K+ trans 100.0 3.2E-33 6.9E-38 281.8 30.3 376 70-471 4-387 (408)
11 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 5.4E-26 1.2E-30 263.2 38.2 356 75-443 15-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 1.3E-25 2.8E-30 259.7 37.2 369 80-470 5-407 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 99.9 3.3E-22 7.1E-27 225.2 38.5 378 73-471 6-406 (429)
14 COG3263 NhaP-type Na+/H+ and K 99.9 4.3E-23 9.3E-28 218.5 28.2 381 70-473 4-387 (574)
15 TIGR00840 b_cpa1 sodium/hydrog 99.9 1.3E-20 2.9E-25 217.9 35.8 372 84-471 20-416 (559)
16 PRK11175 universal stress prot 99.8 5.1E-19 1.1E-23 192.6 19.9 274 496-809 5-299 (305)
17 PRK14853 nhaA pH-dependent sod 99.7 3.1E-15 6.6E-20 164.4 33.0 304 133-473 62-397 (423)
18 KOG4505 Na+/H+ antiporter [Ino 99.7 1.1E-14 2.3E-19 150.0 26.1 350 75-440 16-383 (467)
19 KOG1965 Sodium/hydrogen exchan 99.6 8.2E-14 1.8E-18 155.5 21.4 382 75-472 37-455 (575)
20 cd01988 Na_H_Antiporter_C The 99.5 1.7E-13 3.6E-18 129.4 12.8 131 496-646 1-131 (132)
21 TIGR00773 NhaA Na+/H+ antiport 99.4 5.3E-11 1.1E-15 128.8 24.3 270 133-440 52-344 (373)
22 PRK15456 universal stress prot 99.4 4.4E-12 9.6E-17 121.9 11.9 136 495-646 3-141 (142)
23 PRK15005 universal stress prot 99.3 7.1E-12 1.5E-16 120.5 12.3 137 496-646 4-143 (144)
24 cd01989 STK_N The N-terminal d 99.3 4.8E-11 1E-15 115.1 12.5 142 496-648 1-145 (146)
25 PRK09982 universal stress prot 99.3 1.6E-11 3.5E-16 118.0 8.8 134 496-647 5-138 (142)
26 PRK15118 universal stress glob 99.2 1.2E-10 2.5E-15 112.2 11.1 133 496-647 5-138 (144)
27 PF00582 Usp: Universal stress 99.1 2.1E-10 4.6E-15 108.1 8.7 134 495-646 3-139 (140)
28 cd01987 USP_OKCHK USP domain i 99.1 6.2E-10 1.3E-14 104.1 10.5 122 496-646 1-123 (124)
29 PRK14856 nhaA pH-dependent sod 99.1 1.9E-08 4.1E-13 110.8 23.2 298 132-468 67-428 (438)
30 PRK10116 universal stress prot 99.1 9.9E-10 2.1E-14 105.3 10.9 136 495-649 4-140 (142)
31 PRK09560 nhaA pH-dependent sod 99.0 8.3E-08 1.8E-12 104.3 24.5 271 133-440 59-353 (389)
32 PRK14855 nhaA pH-dependent sod 98.9 1.3E-07 2.8E-12 103.9 23.2 267 133-441 63-384 (423)
33 PRK11175 universal stress prot 98.9 4.2E-09 9.1E-14 114.6 11.0 142 495-651 153-303 (305)
34 cd00293 USP_Like Usp: Universa 98.9 1.1E-08 2.3E-13 95.3 11.1 129 496-646 1-130 (130)
35 PRK14854 nhaA pH-dependent sod 98.9 4.5E-07 9.7E-12 98.1 24.4 272 133-441 56-349 (383)
36 PRK09561 nhaA pH-dependent sod 98.9 5.1E-07 1.1E-11 98.0 24.7 271 133-440 59-351 (388)
37 KOG1966 Sodium/hydrogen exchan 98.7 4.7E-09 1E-13 117.2 3.3 371 84-471 53-448 (670)
38 PF06965 Na_H_antiport_1: Na+/ 98.6 1.8E-07 3.9E-12 101.6 10.8 276 133-445 55-356 (378)
39 cd01989 STK_N The N-terminal d 98.5 3.1E-07 6.8E-12 88.4 9.5 128 667-810 1-145 (146)
40 COG3004 NhaA Na+/H+ antiporter 98.5 1.7E-05 3.6E-10 82.9 21.8 260 142-442 71-356 (390)
41 COG0589 UspA Universal stress 98.5 9.3E-07 2E-11 85.1 11.7 141 495-648 6-152 (154)
42 PRK09982 universal stress prot 98.4 1.5E-06 3.3E-11 83.5 9.7 123 665-809 3-138 (142)
43 PF00582 Usp: Universal stress 98.3 2.1E-06 4.6E-11 80.6 9.4 127 665-808 2-139 (140)
44 cd01987 USP_OKCHK USP domain i 98.3 1.3E-06 2.8E-11 81.5 7.6 123 667-808 1-123 (124)
45 cd01988 Na_H_Antiporter_C The 98.3 3.9E-06 8.4E-11 78.9 10.3 127 667-809 1-132 (132)
46 PRK15005 universal stress prot 98.2 1.2E-05 2.6E-10 77.0 11.9 125 665-808 2-143 (144)
47 PRK10116 universal stress prot 98.2 6E-06 1.3E-10 79.0 8.6 124 665-809 3-138 (142)
48 PRK15456 universal stress prot 98.2 1.7E-05 3.7E-10 76.0 11.3 125 665-808 2-141 (142)
49 PRK12460 2-keto-3-deoxyglucona 98.1 0.00034 7.3E-09 74.4 21.6 256 142-475 51-308 (312)
50 PRK12652 putative monovalent c 98.0 3.9E-05 8.4E-10 84.4 10.8 132 495-643 6-146 (357)
51 PRK15118 universal stress glob 98.0 5.1E-05 1.1E-09 72.8 10.4 125 665-811 3-140 (144)
52 cd00293 USP_Like Usp: Universa 97.9 0.0001 2.2E-09 68.2 11.6 126 667-808 1-130 (130)
53 PF05684 DUF819: Protein of un 97.8 0.065 1.4E-06 59.9 32.6 302 96-447 24-353 (378)
54 PF03812 KdgT: 2-keto-3-deoxyg 97.6 0.0066 1.4E-07 64.4 20.4 256 141-473 50-312 (314)
55 PRK12652 putative monovalent c 97.3 0.001 2.2E-08 73.4 9.8 104 664-769 4-124 (357)
56 TIGR00793 kdgT 2-keto-3-deoxyg 97.3 0.012 2.6E-07 62.1 16.5 259 142-473 51-312 (314)
57 TIGR00698 conserved hypothetic 97.2 0.28 6E-06 53.8 27.6 85 92-184 26-110 (335)
58 COG3180 AbrB Putative ammonia 97.1 0.57 1.2E-05 51.1 29.1 332 75-474 8-350 (352)
59 COG0385 Predicted Na+-dependen 97.0 0.47 1E-05 51.2 26.2 154 133-295 35-191 (319)
60 COG0786 GltS Na+/glutamate sym 97.0 0.14 3E-06 56.1 22.1 121 314-437 232-360 (404)
61 PF03616 Glt_symporter: Sodium 96.9 0.46 9.9E-06 53.1 26.4 95 325-424 247-344 (368)
62 PRK05274 2-keto-3-deoxyglucona 96.6 0.1 2.2E-06 56.9 18.0 136 330-475 178-316 (326)
63 PF03390 2HCT: 2-hydroxycarbox 96.6 0.38 8.1E-06 53.7 22.2 327 74-445 30-394 (414)
64 PF03601 Cons_hypoth698: Conse 96.5 0.26 5.7E-06 53.4 20.3 81 94-184 23-104 (305)
65 COG0798 ACR3 Arsenite efflux p 96.5 1.3 2.9E-05 47.8 24.4 178 100-295 20-202 (342)
66 COG3493 CitS Na+/citrate sympo 96.5 0.49 1.1E-05 51.4 21.1 91 351-445 319-413 (438)
67 COG0589 UspA Universal stress 96.2 0.062 1.3E-06 51.2 11.7 131 665-811 5-153 (154)
68 TIGR00932 2a37 transporter, mo 96.0 0.18 4E-06 53.8 15.7 129 312-448 3-133 (273)
69 TIGR00841 bass bile acid trans 95.9 2.4 5.3E-05 45.7 23.4 101 138-251 10-115 (286)
70 PRK10490 sensor protein KdpD; 95.7 0.059 1.3E-06 67.5 11.8 125 492-647 248-373 (895)
71 PF13593 DUF4137: SBF-like CPA 95.7 3.7 8E-05 44.9 24.1 150 135-294 30-187 (313)
72 PF05145 AmoA: Putative ammoni 95.7 4.3 9.3E-05 44.5 25.4 157 306-472 157-315 (318)
73 TIGR00832 acr3 arsenical-resis 95.7 4.5 9.7E-05 44.5 24.9 100 139-250 46-150 (328)
74 PRK10669 putative cation:proto 95.6 0.32 6.9E-06 57.7 16.9 131 308-446 13-144 (558)
75 PRK03562 glutathione-regulated 95.5 0.43 9.3E-06 57.2 17.7 108 85-210 228-335 (621)
76 PF03601 Cons_hypoth698: Conse 95.5 0.36 7.8E-06 52.4 15.4 163 309-478 6-177 (305)
77 cd01984 AANH_like Adenine nucl 95.5 0.038 8.1E-07 47.8 6.4 50 590-644 35-84 (86)
78 PRK03659 glutathione-regulated 95.5 0.49 1.1E-05 56.6 17.9 107 87-211 227-333 (601)
79 PF06826 Asp-Al_Ex: Predicted 95.5 0.29 6.3E-06 48.3 13.2 114 93-222 19-136 (169)
80 TIGR00210 gltS sodium--glutama 95.4 6.1 0.00013 44.6 25.8 92 324-420 244-338 (398)
81 COG2855 Predicted membrane pro 95.4 0.21 4.4E-06 54.0 12.6 115 318-437 30-144 (334)
82 COG0475 KefB Kef-type K+ trans 95.2 0.68 1.5E-05 52.4 16.8 138 305-452 10-153 (397)
83 PF01758 SBF: Sodium Bile acid 95.0 1.2 2.5E-05 44.9 16.2 105 140-255 2-110 (187)
84 PRK03818 putative transporter; 94.9 0.52 1.1E-05 55.6 15.3 108 100-223 33-143 (552)
85 PRK05326 potassium/proton anti 94.8 0.44 9.6E-06 56.6 14.8 118 308-430 13-133 (562)
86 PF03956 DUF340: Membrane prot 94.6 0.28 6.1E-06 49.4 10.6 126 101-250 2-132 (191)
87 TIGR00783 ccs citrate carrier 94.1 7.3 0.00016 42.8 20.7 119 324-445 203-327 (347)
88 TIGR00698 conserved hypothetic 94.0 1.6 3.5E-05 47.9 15.7 155 309-470 10-175 (335)
89 TIGR00930 2a30 K-Cl cotranspor 93.3 30 0.00065 43.8 37.3 133 490-647 571-708 (953)
90 PRK10490 sensor protein KdpD; 93.3 0.2 4.3E-06 62.8 8.0 98 665-769 250-347 (895)
91 TIGR03082 Gneg_AbrB_dup membra 92.8 3.1 6.8E-05 40.5 14.1 122 310-439 4-127 (156)
92 PLN03159 cation/H(+) antiporte 92.6 3 6.5E-05 51.8 16.8 43 491-535 627-669 (832)
93 TIGR03802 Asp_Ala_antiprt aspa 92.3 0.32 6.8E-06 57.5 7.6 115 94-222 412-530 (562)
94 TIGR00844 c_cpa1 na(+)/h(+) an 92.3 2.6 5.6E-05 51.1 15.0 71 356-430 74-146 (810)
95 COG2205 KdpD Osmosensitive K+ 92.3 0.61 1.3E-05 55.7 9.6 126 492-646 246-372 (890)
96 COG2855 Predicted membrane pro 91.5 24 0.00053 38.5 24.1 102 91-210 31-133 (334)
97 PRK04972 putative transporter; 91.4 0.97 2.1E-05 53.4 10.2 104 93-221 33-140 (558)
98 TIGR03802 Asp_Ala_antiprt aspa 91.4 1.1 2.4E-05 53.0 10.7 79 80-174 13-96 (562)
99 TIGR01625 YidE_YbjL_dupl AspT/ 91.0 1.9 4.1E-05 41.9 10.1 114 96-223 20-138 (154)
100 PF03616 Glt_symporter: Sodium 90.9 2.9 6.2E-05 46.8 12.8 117 357-475 66-187 (368)
101 TIGR00831 a_cpa1 Na+/H+ antipo 90.7 2.9 6.3E-05 49.2 13.2 117 309-432 6-124 (525)
102 TIGR03136 malonate_biotin Na+- 90.5 3 6.5E-05 45.5 11.8 123 355-485 102-227 (399)
103 TIGR03082 Gneg_AbrB_dup membra 90.3 2.8 6E-05 40.9 10.7 98 80-191 2-101 (156)
104 COG2205 KdpD Osmosensitive K+ 89.2 1 2.3E-05 53.8 7.8 96 665-769 248-345 (890)
105 PF03977 OAD_beta: Na+-transpo 88.7 2.6 5.6E-05 45.4 9.6 111 357-475 68-178 (360)
106 COG1346 LrgB Putative effector 88.2 25 0.00053 36.2 15.7 111 345-470 61-171 (230)
107 PF02040 ArsB: Arsenical pump 88.0 55 0.0012 37.4 20.4 37 213-249 117-153 (423)
108 PRK12460 2-keto-3-deoxyglucona 87.4 5.7 0.00012 42.8 11.3 75 100-187 169-243 (312)
109 COG2985 Predicted permease [Ge 85.7 2.5 5.3E-05 47.8 7.7 103 139-250 62-173 (544)
110 PRK04288 antiholin-like protei 84.7 52 0.0011 34.2 16.3 110 346-470 65-174 (232)
111 PF03956 DUF340: Membrane prot 83.8 8 0.00017 39.0 9.9 104 329-435 2-105 (191)
112 PRK04972 putative transporter; 82.6 6.8 0.00015 46.4 10.2 115 95-222 408-525 (558)
113 PRK15475 oxaloacetate decarbox 81.8 1.9 4.2E-05 46.8 4.7 133 356-501 132-270 (433)
114 PRK15476 oxaloacetate decarbox 81.5 2 4.3E-05 46.7 4.7 133 356-501 132-270 (433)
115 PRK15477 oxaloacetate decarbox 81.5 2 4.3E-05 46.7 4.7 133 356-501 132-270 (433)
116 TIGR00210 gltS sodium--glutama 81.4 26 0.00055 39.7 13.7 167 76-252 222-393 (398)
117 TIGR01109 Na_pump_decarbB sodi 81.2 4.9 0.00011 43.2 7.4 112 355-474 60-177 (354)
118 TIGR00946 2a69 he Auxin Efflux 80.1 31 0.00067 37.7 13.8 134 94-249 179-313 (321)
119 PRK03818 putative transporter; 79.8 11 0.00023 44.8 10.5 106 100-219 403-513 (552)
120 PRK10711 hypothetical protein; 78.8 74 0.0016 33.0 14.9 107 349-470 63-169 (231)
121 COG0025 NhaP NhaP-type Na+/H+ 78.4 46 0.001 38.1 14.9 72 358-433 64-137 (429)
122 PF05145 AmoA: Putative ammoni 78.2 26 0.00055 38.5 12.2 101 76-190 155-257 (318)
123 TIGR00808 malonate_madM malona 78.0 25 0.00053 35.4 10.5 106 77-189 17-132 (254)
124 PF01171 ATP_bind_3: PP-loop f 77.4 6.1 0.00013 39.4 6.6 38 667-704 1-38 (182)
125 TIGR02432 lysidine_TilS_N tRNA 76.9 13 0.00029 37.0 9.0 38 667-704 1-38 (189)
126 cd01984 AANH_like Adenine nucl 76.7 5.7 0.00012 34.0 5.4 34 668-702 1-34 (86)
127 cd01992 PP-ATPase N-terminal d 74.7 13 0.00028 36.8 8.2 38 667-704 1-38 (185)
128 PF03547 Mem_trans: Membrane t 74.6 8.8 0.00019 43.0 7.7 102 330-436 11-115 (385)
129 TIGR00659 conserved hypothetic 74.2 1.1E+02 0.0025 31.6 15.9 105 351-470 64-168 (226)
130 COG1883 OadB Na+-transporting 74.0 2.1 4.6E-05 44.9 2.2 126 357-501 83-214 (375)
131 COG0786 GltS Na+/glutamate sym 73.8 15 0.00033 40.7 8.8 118 355-474 66-187 (404)
132 PF00999 Na_H_Exchanger: Sodiu 72.8 1.1 2.3E-05 50.4 -0.3 111 311-427 6-122 (380)
133 COG4651 RosB Kef-type K+ trans 71.6 15 0.00033 39.2 7.7 118 306-431 11-131 (408)
134 COG2431 Predicted membrane pro 69.1 70 0.0015 33.9 11.9 76 99-188 108-188 (297)
135 PRK12342 hypothetical protein; 69.0 8.1 0.00017 40.8 5.3 105 670-793 29-146 (254)
136 PRK05253 sulfate adenylyltrans 67.4 13 0.00028 40.4 6.6 42 666-707 28-69 (301)
137 PRK03359 putative electron tra 66.8 22 0.00047 37.7 8.0 109 670-793 30-149 (256)
138 PF04172 LrgB: LrgB-like famil 65.7 1.4E+02 0.0031 30.7 13.4 79 387-469 79-157 (215)
139 COG3329 Predicted permease [Ge 65.0 1.2E+02 0.0026 32.6 12.6 122 325-451 16-137 (372)
140 PRK09903 putative transporter 63.8 1E+02 0.0022 33.5 13.0 110 95-224 171-281 (314)
141 COG3180 AbrB Putative ammonia 62.9 97 0.0021 34.2 12.1 114 63-190 174-290 (352)
142 COG3263 NhaP-type Na+/H+ and K 62.5 75 0.0016 36.0 11.1 106 318-427 24-131 (574)
143 TIGR00783 ccs citrate carrier 61.3 94 0.002 34.3 11.8 95 89-189 195-292 (347)
144 TIGR02039 CysD sulfate adenyly 60.1 17 0.00037 39.2 5.8 41 667-707 21-61 (294)
145 COG2985 Predicted permease [Ge 59.0 32 0.00069 39.2 7.7 110 97-219 395-507 (544)
146 PF05684 DUF819: Protein of un 56.9 1.1E+02 0.0025 34.3 11.9 98 351-455 51-152 (378)
147 cd01993 Alpha_ANH_like_II This 55.3 81 0.0018 30.9 9.6 38 667-704 1-40 (185)
148 TIGR01625 YidE_YbjL_dupl AspT/ 53.3 41 0.00089 32.7 6.7 92 327-422 23-120 (154)
149 PF03547 Mem_trans: Membrane t 53.3 3.6E+02 0.0078 30.0 19.2 88 326-416 244-336 (385)
150 COG1346 LrgB Putative effector 51.0 3E+02 0.0066 28.5 17.9 94 86-189 19-117 (230)
151 COG2086 FixA Electron transfer 50.4 38 0.00083 35.8 6.4 110 670-794 31-149 (260)
152 KOG1650 Predicted K+/H+-antipo 50.4 2.7E+02 0.0059 34.5 14.6 65 139-211 313-377 (769)
153 PF04018 DUF368: Domain of unk 50.0 3.4E+02 0.0074 28.8 14.6 44 66-111 53-96 (257)
154 COG1646 Predicted phosphate-bi 49.8 56 0.0012 33.8 7.1 64 578-649 15-79 (240)
155 PRK12563 sulfate adenylyltrans 49.0 28 0.0006 37.9 5.2 43 666-708 38-80 (312)
156 PF01012 ETF: Electron transfe 48.9 26 0.00057 34.1 4.7 27 676-702 15-41 (164)
157 KOG2310 DNA repair exonuclease 48.3 30 0.00066 39.8 5.4 58 591-651 40-100 (646)
158 PRK01663 C4-dicarboxylate tran 48.1 2.2E+02 0.0048 32.6 12.6 35 154-188 66-100 (428)
159 TIGR00793 kdgT 2-keto-3-deoxyg 47.2 1.5E+02 0.0033 32.0 10.2 75 100-187 174-248 (314)
160 PF03812 KdgT: 2-keto-3-deoxyg 46.7 72 0.0016 34.5 7.7 75 100-187 174-248 (314)
161 TIGR00840 b_cpa1 sodium/hydrog 46.3 5.8E+02 0.013 30.4 16.2 73 357-433 69-150 (559)
162 COG0679 Predicted permeases [G 45.6 4.3E+02 0.0093 28.7 30.3 135 325-467 167-304 (311)
163 PF05982 DUF897: Domain of unk 44.2 1E+02 0.0022 33.7 8.4 67 101-180 184-250 (327)
164 COG0037 MesJ tRNA(Ile)-lysidin 43.5 1.3E+02 0.0028 32.3 9.5 38 665-704 21-58 (298)
165 COG2035 Predicted membrane pro 43.3 4.4E+02 0.0095 28.1 16.3 49 69-119 57-107 (276)
166 PF04172 LrgB: LrgB-like famil 41.1 4.2E+02 0.0091 27.3 16.5 68 147-224 62-130 (215)
167 COG3969 Predicted phosphoadeno 40.4 65 0.0014 35.2 6.2 38 665-702 27-65 (407)
168 PRK10660 tilS tRNA(Ile)-lysidi 39.4 1.2E+02 0.0026 34.9 8.7 59 665-729 15-74 (436)
169 COG2117 Predicted subunit of t 37.9 24 0.00052 34.2 2.3 32 667-702 2-33 (198)
170 KOG1965 Sodium/hydrogen exchan 37.0 1.5E+02 0.0034 34.8 9.0 71 357-431 102-179 (575)
171 COG5505 Predicted integral mem 36.2 6E+02 0.013 27.6 27.0 84 357-446 275-358 (384)
172 PF01507 PAPS_reduct: Phosphoa 35.6 46 0.001 32.3 4.1 34 667-704 1-34 (174)
173 PRK04125 murein hydrolase regu 34.6 4.2E+02 0.0091 25.4 10.9 26 73-98 8-33 (141)
174 PF03390 2HCT: 2-hydroxycarbox 33.1 7.4E+02 0.016 28.2 13.3 91 93-189 267-359 (414)
175 PRK09903 putative transporter 31.9 3.1E+02 0.0067 29.8 10.3 90 327-421 11-101 (314)
176 cd01713 PAPS_reductase This do 31.6 57 0.0012 31.2 4.1 37 667-704 1-37 (173)
177 PF07905 PucR: Purine cataboli 30.2 4.1E+02 0.0089 24.4 9.3 88 523-614 21-110 (123)
178 COG3371 Predicted membrane pro 29.7 3E+02 0.0066 27.4 8.4 89 64-168 46-135 (181)
179 PLN00200 argininosuccinate syn 29.5 1.2E+02 0.0025 34.5 6.4 37 665-704 5-41 (404)
180 PF02844 GARS_N: Phosphoribosy 29.2 67 0.0014 28.8 3.5 80 667-781 2-81 (100)
181 cd06285 PBP1_LacI_like_7 Ligan 28.9 3.4E+02 0.0073 27.9 9.7 72 558-650 13-87 (265)
182 PF02601 Exonuc_VII_L: Exonucl 28.7 66 0.0014 35.1 4.3 25 745-769 57-86 (319)
183 TIGR02432 lysidine_TilS_N tRNA 28.5 3.8E+02 0.0082 26.4 9.5 95 496-614 1-110 (189)
184 PF01171 ATP_bind_3: PP-loop f 28.4 3.3E+02 0.0071 26.8 8.9 96 496-614 1-107 (182)
185 PF00375 SDF: Sodium:dicarboxy 27.6 3.7E+02 0.008 30.2 10.2 110 136-246 182-297 (390)
186 COG3763 Uncharacterized protei 27.5 3.3E+02 0.0072 22.7 6.8 37 269-308 10-46 (71)
187 PF13593 DUF4137: SBF-like CPA 27.5 6.7E+02 0.015 27.3 11.8 50 328-380 7-56 (313)
188 KOG0785 Isocitrate dehydrogena 27.0 46 0.001 35.6 2.5 74 679-767 185-258 (365)
189 COG1609 PurR Transcriptional r 26.6 6.9E+02 0.015 27.3 11.9 76 558-651 72-147 (333)
190 TIGR02359 thiW thiW protein. L 26.3 6.2E+02 0.014 24.7 12.6 48 99-151 34-84 (160)
191 PF01889 DUF63: Membrane prote 25.8 8.4E+02 0.018 26.1 18.6 43 208-250 152-196 (273)
192 PF02844 GARS_N: Phosphoribosy 25.5 61 0.0013 29.1 2.6 22 590-611 49-70 (100)
193 PRK01658 holin-like protein; V 25.4 5.5E+02 0.012 23.8 11.6 26 73-98 5-30 (122)
194 TIGR01109 Na_pump_decarbB sodi 25.1 7.1E+02 0.015 27.4 10.8 73 305-380 194-266 (354)
195 PRK00109 Holliday junction res 24.9 1.5E+02 0.0032 28.2 5.3 57 591-650 42-98 (138)
196 COG3199 Predicted inorganic po 24.9 1.9E+02 0.0042 31.7 6.7 94 681-789 34-129 (355)
197 KOG3826 Na+/H+ antiporter [Ino 24.8 82 0.0018 32.6 3.7 121 79-213 103-229 (252)
198 COG4827 Predicted transporter 24.6 7.6E+02 0.017 25.2 11.8 43 137-179 10-55 (239)
199 PRK00286 xseA exodeoxyribonucl 24.5 83 0.0018 36.1 4.3 49 720-769 151-203 (438)
200 PRK06806 fructose-bisphosphate 23.9 5.3E+02 0.011 27.7 9.9 116 576-701 17-138 (281)
201 PF10136 SpecificRecomb: Site- 23.9 4.6E+02 0.01 31.7 10.2 25 63-88 462-486 (643)
202 COG3748 Predicted membrane pro 23.8 6.7E+02 0.014 27.4 10.2 39 357-398 226-264 (407)
203 cd01992 PP-ATPase N-terminal d 23.7 5E+02 0.011 25.3 9.3 96 496-614 1-107 (185)
204 PRK10696 tRNA 2-thiocytidine b 23.1 3.3E+02 0.0072 28.7 8.2 39 665-703 29-69 (258)
205 COG5000 NtrY Signal transducti 22.9 9.1E+02 0.02 29.0 11.9 71 276-356 50-120 (712)
206 COG1570 XseA Exonuclease VII, 22.9 1.2E+02 0.0026 34.5 4.9 50 720-769 151-204 (440)
207 PF03600 CitMHS: Citrate trans 22.9 1E+03 0.022 26.0 15.5 18 213-230 117-134 (351)
208 PF03652 UPF0081: Uncharacteri 22.9 3.1E+02 0.0068 25.9 7.1 60 588-650 36-96 (135)
209 PRK04148 hypothetical protein; 22.1 1.1E+02 0.0024 29.0 3.8 32 584-615 83-114 (134)
210 cd06286 PBP1_CcpB_like Ligand- 21.9 8.5E+02 0.018 24.7 11.6 50 557-609 12-61 (260)
211 PF03686 UPF0146: Uncharacteri 21.9 1.5E+02 0.0033 27.7 4.6 32 584-615 76-107 (127)
212 cd01995 ExsB ExsB is a transcr 21.8 1.7E+02 0.0036 28.5 5.3 33 667-703 1-33 (169)
213 PRK09765 PTS system 2-O-a-mann 21.8 1.5E+03 0.032 27.5 17.2 25 269-293 418-442 (631)
214 PF03977 OAD_beta: Na+-transpo 21.6 1.1E+03 0.024 26.0 23.8 248 78-380 5-266 (360)
215 cd06319 PBP1_ABC_sugar_binding 21.4 8.9E+02 0.019 24.8 12.4 75 558-650 13-89 (277)
216 PF00532 Peripla_BP_1: Peripla 21.2 2.5E+02 0.0054 29.8 7.0 51 557-611 14-64 (279)
217 PRK15475 oxaloacetate decarbox 20.8 1.1E+03 0.023 26.5 11.2 73 305-380 265-337 (433)
218 PF13829 DUF4191: Domain of un 20.8 3.4E+02 0.0073 28.1 7.2 49 156-212 18-66 (224)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=5e-152 Score=1363.88 Aligned_cols=758 Identities=37% Similarity=0.644 Sum_probs=691.5
Q ss_pred ccccCCCccCcCCceeecccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccc
Q 047130 42 FCMPVPPYVNSNGIWQFIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYY 121 (815)
Q Consensus 42 ~c~~~~~~~~s~gi~~~~~~~g~~pl~~~lp~~ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~ 121 (815)
+|+. +.+.+|+|+|+ |+||++|++|++++|+++++++++++++++||+|||++++||++|+++||+++|.++.+
T Consensus 18 ~c~~-~~~~~s~g~~~-----g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~ 91 (832)
T PLN03159 18 VCYA-PMMITTNGIWQ-----GDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVF 91 (832)
T ss_pred cccc-CCCccCCcccc-----cCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhh
Confidence 5994 43579999999 99999999999999999999999999999999999999999999999999999999888
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHH
Q 047130 122 KHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKL 201 (815)
Q Consensus 122 ~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~ 201 (815)
.+.+||.++.+.+++++++|++++||++|+|+|++.+||++|+++.+|+.++++|+++|+++++++.. ...+.......
T Consensus 92 ~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~-~~~~~~~~~~~ 170 (832)
T PLN03159 92 ANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQ-VSRNVHQGTFI 170 (832)
T ss_pred hhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccchhHHH
Confidence 88999988888999999999999999999999999999999999999999999999999988887743 22111234567
Q ss_pred HHHHHHHhhccHHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHH
Q 047130 202 WVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVV 281 (815)
Q Consensus 202 l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 281 (815)
+++|+++|.||+|+++++|+|+|+++|+.||+++++++++|+++|++++++.++...+. +....+|.++..++|++++.
T Consensus 171 l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~-~~~~~l~~~l~~~~f~~~~~ 249 (832)
T PLN03159 171 LFLGVALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDS-TSLASLWVLLSSVAFVLFCF 249 (832)
T ss_pred HHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999988876654322 22345677777788888889
Q ss_pred HHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhH
Q 047130 282 FVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFI 361 (815)
Q Consensus 282 ~v~r~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~l 361 (815)
+++||++.|+.+|++++++.+|.++.++++++++++++++.+|+|+++|||++|+++|+ +|+++++.+|+++++.++|+
T Consensus 250 ~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~lfl 328 (832)
T PLN03159 250 YVVRPGIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGLLL 328 (832)
T ss_pred HHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888999999999999999999999999999999999999998 47999999999999999999
Q ss_pred HHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccc
Q 047130 362 PLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNI 441 (815)
Q Consensus 362 PlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~ 441 (815)
|+||+++|+++|+..+.+...|. .+++++++++++|+++++++++++|+|++|++.+|++||+||++++++++++++.
T Consensus 329 PlFFv~vGl~idl~~l~~~~~~~--~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~ 406 (832)
T PLN03159 329 PLFFAISGLKTNVTKIQGPATWG--LLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQ 406 (832)
T ss_pred HHHHHHhhheeeHHHhcCchHHH--HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 99999999999998887553453 4566777889999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCccceeEEeeecCCChHHHHHHHHHhCCCC
Q 047130 442 ESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQASCPKR 521 (815)
Q Consensus 442 ~~i~~~~~~~lv~~~ll~t~i~~~lv~~ly~p~~~~~~~~~r~i~~~~~~~~elrILv~i~~~~~~~~~i~la~~~~~~~ 521 (815)
|+++++.|++++++++++|.+.+|++.++|||+|||..|++|++ |+.++++|+|||+|+|+++|++++++|++++++++
T Consensus 407 gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i-~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~ 485 (832)
T PLN03159 407 EVLDDESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTI-QRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTK 485 (832)
T ss_pred CccCchhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhcccccccc-ccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCceEEEEEeeeccCCCccchhhhhccccccC----CcccchHHHHHHHHHHHhcCcceEEEEEEEecCCCChhHHHHH
Q 047130 522 GSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVS----NRSYSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCM 597 (815)
Q Consensus 522 ~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~----~~~~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~m~~dI~~ 597 (815)
++|.++|++||+|+++|++|++++|+.+++... ...++|++.++|+.|++++ ++++++++|++||+++||+|||+
T Consensus 486 ~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~~v~v~~~t~vs~~~~mh~dIc~ 564 (832)
T PLN03159 486 RSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHA-GCVSVQPLTAISPYSTMHEDVCN 564 (832)
T ss_pred CCCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHHHHHhhc-CceEEEEEEEEeCcccHHHHHHH
Confidence 999999999999999999999999987543221 2345799999999999864 58999999999999999999999
Q ss_pred HHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEeccCCcccccccccccCCcceEEEEecCCcc
Q 047130 598 LALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGRIGRFISSELSLGSSFRVAMIFLGGSD 677 (815)
Q Consensus 598 ~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~~I~~~f~gg~D 677 (815)
+|+|+++|+||+||||+|+.||.++++++.+|.+|+|||++|||||||+||||. .+..+.+.....+||+++|+||||
T Consensus 565 ~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~--~~~~~~~~~~~~~~v~~~F~GG~D 642 (832)
T PLN03159 565 LAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGL--SGATRLASNQVSHHVAVLFFGGPD 642 (832)
T ss_pred HHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCC--CccccccccccceeEEEEecCCcc
Confidence 999999999999999999999999999999999999999999999999999996 332222334557899999999999
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEEeeecCcccc-------------------ccchhhhhHHHHHHHhcccCCCCCCEEEE
Q 047130 678 DREALTLAKRMSQNTSINLTVFRFIVKTDEMI-------------------STNWEKVLDSEVLKEVKPENNFNQRVKYV 738 (815)
Q Consensus 678 dreAL~~a~rma~~~~v~ltvl~~~~~~~~~~-------------------~~~~~~~~d~~~l~~~~~~~~~~~~v~y~ 738 (815)
|||||+||+|||+||++++||+||++++.... .++.|+++||++++||+.++.+++++.|.
T Consensus 643 DREALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~ 722 (832)
T PLN03159 643 DREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYT 722 (832)
T ss_pred hHHHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 99999999999999999999999986532111 13568889999999999998878899999
Q ss_pred EEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEEeeeccC
Q 047130 739 VEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQQQQTT 814 (815)
Q Consensus 739 e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvvqq~~~~ 814 (815)
|++|+||+|+++.+|+++++|||++|||+|+.+|++|+||+||+||||||+|||+|||+||.+++||||||||+.|
T Consensus 723 E~~V~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~~~ 798 (832)
T PLN03159 723 EKVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYVGT 798 (832)
T ss_pred EEecCCHHHHHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEEeeccC
Confidence 9999999999999999999999999999998789999999999999999999999999999999999999999865
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-126 Score=1126.55 Aligned_cols=752 Identities=41% Similarity=0.696 Sum_probs=687.4
Q ss_pred ccCcCCceeecccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCC
Q 047130 49 YVNSNGIWQFIGKAGNHPWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSD 128 (815)
Q Consensus 49 ~~~s~gi~~~~~~~g~~pl~~~lp~~ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~ 128 (815)
+.+++|+|+ |+||++|++|++++|+++++++++++++++||+|||++++||++||++||+.+|+++.+.+.+||.
T Consensus 4 ~~~~~g~~~-----~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~ 78 (769)
T KOG1650|consen 4 KATSNGVFP-----GVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPK 78 (769)
T ss_pred ccccCCccc-----CCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhccccc
Confidence 468999999 999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CchhHHHHHHHHHHHHHHHHhhcccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc----hHHHHHHH
Q 047130 129 TSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGME----DKMKLWVV 204 (815)
Q Consensus 129 ~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~----~~~~~l~i 204 (815)
++...+++++.+|+.+++|+.|+|+|.+.++|++|++..+|+.++++|+..|..+...+......... ...+..++
T Consensus 79 ~s~~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (769)
T KOG1650|consen 79 SSMIVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFI 158 (769)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHH
Confidence 89999999999999999999999999999999999999999999999999988887776433221111 12267888
Q ss_pred HHHHhhccHHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 047130 205 TVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVV 284 (815)
Q Consensus 205 g~~ls~Ts~~vv~~iL~el~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~ 284 (815)
..++|.|+||+++++|.|+|++++|+||+++++++++|+++|.++++..+.......+.....|.+...++|++++.+++
T Consensus 159 ~~~~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 238 (769)
T KOG1650|consen 159 LSAQSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVV 238 (769)
T ss_pred HHHhhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeeh
Confidence 99999999999999999999999999999999999999999999988887765444345567888888999999999999
Q ss_pred HHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhC-chhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHH
Q 047130 285 RPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFG-QHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPL 363 (815)
Q Consensus 285 r~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G-~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPl 363 (815)
||.+.|+.||+|++++.++.|...+++.+++++.+++.++ +|+++|||+.|+++|++||+++.+.+|+|+++.++|+|+
T Consensus 239 ~p~~~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl 318 (769)
T KOG1650|consen 239 RPLMKWIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPL 318 (769)
T ss_pred hhhHHHHhhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccc
Q 047130 364 VVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIES 443 (815)
Q Consensus 364 FF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~ 443 (815)
||+.+|+++|+..+.. |. .....+.+.+++|++++..++.++|+|+||++.+|++|++||.+|++.++.+++.|+
T Consensus 319 ~~~~~G~k~di~~i~~---~~--~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~ 393 (769)
T KOG1650|consen 319 YFAISGLKTDISRINK---WG--ALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKI 393 (769)
T ss_pred HHHhhccceeHHHHHH---HH--HHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 9999999999998886 43 466777778899999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCccceeEEeeecCCChHHHHHHHHHhCCCCCC
Q 047130 444 LTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQASCPKRGS 523 (815)
Q Consensus 444 i~~~~~~~lv~~~ll~t~i~~~lv~~ly~p~~~~~~~~~r~i~~~~~~~~elrILv~i~~~~~~~~~i~la~~~~~~~~~ 523 (815)
++++.|++++++++++|.++||+++.+|||.|++..|++|++ ||.++++|+||+.|+|++++++++++++|++.+++++
T Consensus 394 ~~~~~f~~~vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i-~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~~~~ 472 (769)
T KOG1650|consen 394 LSDEGFTVMVLMALVSTFITPPLLMFLYDPTRKYHGYKKRGI-QHLKPNSELRILTCLHGPENISGIINLLELSSGSLES 472 (769)
T ss_pred cccchHHHHHHHHHHHHhhHHHHHHHhcchhhhcCceEeehh-hhcCCCCceEEEEEecCCCcchHHHHHHHHcCCCCCC
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999998878
Q ss_pred CceEEEEEeeeccCCCccchhhhhcccc-ccC-CcccchHHHHHHHHHHHhcCcceEEEEEEEecCCCChhHHHHHHHHh
Q 047130 524 LVTVYVLHLIDLRGRAAPLFISHKMQKK-TVS-NRSYSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALD 601 (815)
Q Consensus 524 ~~~v~~Lhlvel~~r~~~~~~~~~~~~~-~~~-~~~~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e 601 (815)
|.+++++|++|+.+|+.|++++|+.+++ ... ....++++..+|+.|++.+.+.+.++++|+++|+++||+|||.+|.+
T Consensus 473 p~~v~~lhlveL~~~~~~~li~h~~~~~~~~~~~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~ 552 (769)
T KOG1650|consen 473 PLSVYALHLVELVGRATPLLISHKLRKNGRVESRSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALD 552 (769)
T ss_pred CcceeeeeeeecccccchhhhhhhhccccccccccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHh
Confidence 9999999999999999999999987665 332 23455688999999998544679999999999999999999999999
Q ss_pred cCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEeccCCcccccccccccCCcceEEEEecCCccHHHH
Q 047130 602 KLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGRIGRFISSELSLGSSFRVAMIFLGGSDDREA 681 (815)
Q Consensus 602 ~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~~I~~~f~gg~DdreA 681 (815)
+++++|++|||++|+.++.+++.+..+|.+|++|+++|||||||++|||. .+....+.....++|+++|+||+|||||
T Consensus 553 ~~~~liilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~--~~~~~~~~~~~~~~v~~lF~GG~DDrEA 630 (769)
T KOG1650|consen 553 KGVSLIILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGL--RRSGVTQKRGSSYKVVVLFLGGKDDREA 630 (769)
T ss_pred hCCcEEEeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCc--ccccceecccceeEEEEEecCChhhHHH
Confidence 99999999999999966689999999999999999999999999999972 1111112233678999999999999999
Q ss_pred HHHHHHHhhCCCeEEEEEEeeecCccccc---cchhhhhHHHHHHHh-cccCCCCCCEEEE-EEEecCcHHHHHHHHhhC
Q 047130 682 LTLAKRMSQNTSINLTVFRFIVKTDEMIS---TNWEKVLDSEVLKEV-KPENNFNQRVKYV-VEMVNEGQETLAKIQSVV 756 (815)
Q Consensus 682 L~~a~rma~~~~v~ltvl~~~~~~~~~~~---~~~~~~~d~~~l~~~-~~~~~~~~~v~y~-e~~V~~g~~~~~~i~~~~ 756 (815)
|++++||++||++++||+||...+...++ +++++.+|++..+++ +..+.++..+.|. |+.|++|.||.+.++++.
T Consensus 631 La~~~rm~~~~~v~lTVirf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ek~v~~~~et~~~~~~~~ 710 (769)
T KOG1650|consen 631 LALAKRMAENPRVTLTVIRFFPDESKYNRKVLVEVGKMLDQEGLEDFVKSTRESNLDIIYAEEKIVLNGAETTALLRSIT 710 (769)
T ss_pred HHHHHHHhhCCceEEEEEEeeccchhhcccccchhhhhhhhhHHHHHHHHhhhchhhhhhhhHHHHhcchhHHHHHHHhc
Confidence 99999999999999999999976443332 367888888888888 6555556678888 699999999999999999
Q ss_pred CCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEEeeecc
Q 047130 757 PKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQQQQT 813 (815)
Q Consensus 757 ~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvvqq~~~ 813 (815)
++|||++|||.++.+++.|+|+++|+||||||+|||+|+|+||.+++||||+|||++
T Consensus 711 ~~ydL~ivGr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~~~~~svlvvqq~~~ 767 (769)
T KOG1650|consen 711 EDYDLFIVGRSHGMLSEATGGLSEWSECPELGVIGDLLASSDFSSKVSVLVVQQQLY 767 (769)
T ss_pred cccceEEEecccccccchhcCchhcccCccccccCccccccccCccceEEEEEeeec
Confidence 999999999999999999999999999999999999999999999999999999975
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=1.1e-47 Score=450.93 Aligned_cols=409 Identities=15% Similarity=0.211 Sum_probs=328.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcc
Q 047130 73 RLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVK 152 (815)
Q Consensus 73 ~~ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle 152 (815)
.++.++.+++.++.++..++||+|+|+++|||++|+++||+++|.++ ..+.++.++++|++++||.+|+|
T Consensus 5 ~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~----------~~~~i~~laelGvv~LlF~iGLE 74 (621)
T PRK03562 5 HTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT----------DVESILHFAEFGVVLMLFVIGLE 74 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC----------CHHHHHHHHHHHHHHHHHHHHhC
Confidence 48899999999999999999999999999999999999999999864 24568999999999999999999
Q ss_pred cChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChhHH
Q 047130 153 MDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGR 232 (815)
Q Consensus 153 ~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~ 232 (815)
+|++.+|+.+|+++.+|..++++|+++++.++++++. +|..++++|.+++.||++++.++|+|+|+++|+.||
T Consensus 75 l~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~-------~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~ 147 (621)
T PRK03562 75 LDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLGL-------RWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGR 147 (621)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHH
Confidence 9999999999999999999999999988877766643 477899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCCCCchhHHH
Q 047130 233 LGLSCALVSEMIGLILTRSAIWIASIYHA-PLHSAYRNLGIMVVYLLAV----VFVVRPAMLWVVKQTPEGKPVNSLHIH 307 (815)
Q Consensus 233 lals~a~v~D~~~~~ll~v~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~----~~v~r~~~~~l~~r~~~~~~~~e~~~~ 307 (815)
.++++++++|+++|++++++..+...+.. +....++..+..++++++. .++.+|+++|+.++ +.+|.+..
T Consensus 148 ~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~-----~~~e~~~~ 222 (621)
T PRK03562 148 SAFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARS-----GLREVFTA 222 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchHHHH
Confidence 99999999999999999887665432111 1111122222222222222 33445555554433 24678888
Q ss_pred HHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHH
Q 047130 308 NIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKS 387 (815)
Q Consensus 308 ~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~ 387 (815)
.+++++++++++++.+|+|+++|||++|+++++. +++++++++++++ .++|+|+||+++||++|+..+... .+ .
T Consensus 223 ~~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~~-~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~~~-~~---~ 296 (621)
T PRK03562 223 VALFLVFGFGLLMEEVGLSMALGAFLAGVLLASS-EYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLLEN-PL---R 296 (621)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcCC-ccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHHH-HH---H
Confidence 8899999999999999999999999999999996 6899999999999 699999999999999999887654 22 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHH
Q 047130 388 TAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILV 467 (815)
Q Consensus 388 ~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv 467 (815)
++.++++.+++|++++++.++++|+++++++.+|++|+++|+++++++.++.+.|+++++.|+.+++++++|++++|++.
T Consensus 297 il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~ 376 (621)
T PRK03562 297 ILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLL 376 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667899999999999999999999999999999999999999999999999999999999998888777776665
Q ss_pred Hhhhccc--cccccccccccccccCCCccceeEEeeecCCChHHHHHHHH
Q 047130 468 KFLYDPS--RKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQ 515 (815)
Q Consensus 468 ~~ly~p~--~~~~~~~~r~i~~~~~~~~elrILv~i~~~~~~~~~i~la~ 515 (815)
.. |++. +++... +. +...++.+-|+++|-++. ....+.+.++
T Consensus 377 ~~-~~~~~~~~~~~~--~~--~~~~~~~~~~vII~G~Gr-~G~~va~~L~ 420 (621)
T PRK03562 377 VL-LDRLEQSRTEEA--RE--ADEIDEQQPRVIIAGFGR-FGQIVGRLLL 420 (621)
T ss_pred Hh-hhHHHHHHhhhc--cc--ccccccccCcEEEEecCh-HHHHHHHHHH
Confidence 44 5432 111111 11 111122356888887554 4444444443
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=2.6e-47 Score=446.41 Aligned_cols=378 Identities=15% Similarity=0.237 Sum_probs=324.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhccc
Q 047130 74 LELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKM 153 (815)
Q Consensus 74 ~ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~ 153 (815)
++..+.++++++.+++.++||+|+|++++||++|+++||+++|..+ ..+.++.++++|++++||.+|+|+
T Consensus 7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~----------~~~~~~~la~lGli~llF~~Gle~ 76 (558)
T PRK10669 7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVA----------DTKLAPELAELGVILLMFGVGLHF 76 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCcccccccc----------chHHHHHHHHHHHHHHHHHhHhcC
Confidence 3567788899999999999999999999999999999999998753 246789999999999999999999
Q ss_pred ChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChhHHH
Q 047130 154 DVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRL 233 (815)
Q Consensus 154 d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~l 233 (815)
|++.+|+.++..+..++.++++|+++++++++.++. ++..++++|+++|.||++++.++|+|+|+++++.||+
T Consensus 77 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~ 149 (558)
T PRK10669 77 SLKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLGW-------SLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQI 149 (558)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHH
Confidence 999999998888888888989999888877766653 4678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---cCCChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHH
Q 047130 234 GLSCALVSEMIGLILTRSAIWIASI---YHAPLH----SAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHI 306 (815)
Q Consensus 234 als~a~v~D~~~~~ll~v~~~~~~~---~~~~~~----~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~ 306 (815)
++++++++|+.+|+++++...+... +..+.. ...+.++..+++++++.++.|++++|+.++.++.+ .+|.+.
T Consensus 150 ~l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~ 228 (558)
T PRK10669 150 AIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELFT 228 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHH
Confidence 9999999999999988877654321 111111 12345556667777788899999999999987664 678888
Q ss_pred HHHHHHHHHHHHH-HHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHH
Q 047130 307 HNIIMLALGAGYI-SDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLA 385 (815)
Q Consensus 307 ~~~l~~~l~~~~i-~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~ 385 (815)
..++++++++++. ++.+|+|+++|||++|+++|+. +.++++.+...++ .++|+|+||+++|+++|+..+.+. .+
T Consensus 229 l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~~-~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~~~-~~-- 303 (558)
T PRK10669 229 LSVLALALGIAFGAVELFDVSFALGAFFAGMVLNES-ELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILIQQ-PL-- 303 (558)
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhCC-hhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHHHH-HH--
Confidence 8888888888864 6999999999999999999986 6788888777776 689999999999999999887654 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHH
Q 047130 386 KSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPI 465 (815)
Q Consensus 386 ~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~ 465 (815)
.+..++++.+++|++++++.++++|+++|+++.+|++|++||+++++++..+.+.|+++++.|+++++++++|++++|+
T Consensus 304 -~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~ 382 (558)
T PRK10669 304 -AVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPV 382 (558)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3455666788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccc
Q 047130 466 LVKFLYDPSR 475 (815)
Q Consensus 466 lv~~ly~p~~ 475 (815)
+.++..+..+
T Consensus 383 l~~~~~~~~~ 392 (558)
T PRK10669 383 LFTLLERYLA 392 (558)
T ss_pred HHHHhhHHHH
Confidence 9888765433
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=3.3e-46 Score=437.89 Aligned_cols=411 Identities=16% Similarity=0.215 Sum_probs=324.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhccc
Q 047130 74 LELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKM 153 (815)
Q Consensus 74 ~ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~ 153 (815)
++.++.+++.++.++..+++|+|+|++++||++|+++||+++|.++ ..+.+..++++|++++||.+|+|+
T Consensus 6 ~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~----------~~~~i~~laelGvv~LLF~iGLel 75 (601)
T PRK03659 6 LLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS----------DVDEILHFSELGVVFLMFIIGLEL 75 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC----------cHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5778899999999999999999999999999999999999999864 235678999999999999999999
Q ss_pred ChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChhHHH
Q 047130 154 DVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRL 233 (815)
Q Consensus 154 d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~l 233 (815)
|++.+++.+|+++.+|..++++|+++++.+.++++. +|..++++|++++.||++++.++|+|+|+++++.||+
T Consensus 76 ~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g~-------~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~ 148 (601)
T PRK03659 76 NPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTDF-------SWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQL 148 (601)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHH
Confidence 999999999999999999999999877666555432 4788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHH
Q 047130 234 GLSCALVSEMIGLILTRSAIWIASIYHAP--LHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIM 311 (815)
Q Consensus 234 als~a~v~D~~~~~ll~v~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~~l~ 311 (815)
+++.++++|+.+++++++...+....... .....+.++..++++++..++.+|+++|+.+. +.+|.++..+++
T Consensus 149 ~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~l~ 223 (601)
T PRK03659 149 GFSVLLFQDLAVIPALALVPLLAGSADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAAS-----GVREVFTAAALL 223 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHH
Confidence 99999999999999988876654322211 01111111112222222234445555444332 256888999999
Q ss_pred HHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHH
Q 047130 312 LALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVI 391 (815)
Q Consensus 312 ~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i 391 (815)
++++++++++.+|+|+++|||++|+++++. +++++++++++++ .++|+|+||+++||++|+..+.+. |. .++.+
T Consensus 224 ~vl~~a~l~~~~Gls~~LGAFlaGl~l~~s-~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~~~--~~--~il~~ 297 (601)
T PRK03659 224 LVLGSALFMDALGLSMALGTFIAGVLLAES-EYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVLYTH--LL--WVLIS 297 (601)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHhcCC-chHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHHHh--HH--HHHHH
Confidence 999999999999999999999999999996 6899999999998 699999999999999999888755 32 34556
Q ss_pred HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 047130 392 VAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLY 471 (815)
Q Consensus 392 ~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~ly 471 (815)
+++.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++++|++++|.+. .+|
T Consensus 298 ~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~-~~~ 376 (601)
T PRK03659 298 VVVLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLM-KLI 376 (601)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHh
Confidence 6667899999999999999999999999999999999999999999999999999999999888888886655555 455
Q ss_pred cc--ccccccccccccccccCCCccceeEEeeecCCChHHHHHHHH
Q 047130 472 DP--SRKYAGYQKRNIMQHSKASGELRILACIYRPDNIPAIIKFLQ 515 (815)
Q Consensus 472 ~p--~~~~~~~~~r~i~~~~~~~~elrILv~i~~~~~~~~~i~la~ 515 (815)
+| ++++....+... .+...+.+-++++|-.+. -...+.+.+.
T Consensus 377 ~~~~~~~~~~~~~~~~-~~~~~~~~~~vII~G~Gr-~G~~va~~L~ 420 (601)
T PRK03659 377 DKWLARRLNGPEEEDE-KPWVEDDKPQVIIVGFGR-FGQVIGRLLM 420 (601)
T ss_pred HHHHHHhhcccccccc-ccccccccCCEEEecCch-HHHHHHHHHH
Confidence 44 333321111100 111112356888887544 4444444443
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-45 Score=409.36 Aligned_cols=380 Identities=22% Similarity=0.354 Sum_probs=329.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcc
Q 047130 73 RLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVK 152 (815)
Q Consensus 73 ~~ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle 152 (815)
..+.++.++++++.+.+.++||+|+|+++||+++|+++||..++... +..+.++.++++|++++||.+|+|
T Consensus 6 ~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~---------~~~~~i~~laelGvi~LlF~~GLE 76 (397)
T COG0475 6 LILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLII---------ESSEIIELLAELGVVFLLFLIGLE 76 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccC---------CchHHHHHHHHHhHHHHHHHHHHC
Confidence 57889999999999999999999999999999999999995554432 467899999999999999999999
Q ss_pred cChhHHHhcchh-hHHHHHHHHHHHHHHHHHHHHH-HHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChh
Q 047130 153 MDVSMIQKTGKK-SLFTGLLTLLIPFLLGAAALEK-MSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSEL 230 (815)
Q Consensus 153 ~d~~~l~~~~k~-~~~i~~~~~~ip~~~~~~~~~~-l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~ 230 (815)
+|++.+||++|+ +...+..++..|+.++....+. ++. ++..++++|.+++.||+++++++++|+|.++++.
T Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~-------~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~ 149 (397)
T COG0475 77 FDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGL-------SLIAALFLGAALALSSTAIVLKILMELGLLKTRE 149 (397)
T ss_pred cCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhcc-------ChHHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 999999999999 8888888889998887655443 322 4678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHH
Q 047130 231 GRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNII 310 (815)
Q Consensus 231 g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~~l 310 (815)
|++++++++++|+.+++++++...+...++.+....+..+....+|.++..+..|++.+|+.|+..+. +.+|....+++
T Consensus 150 g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~-~~~e~~~~~~l 228 (397)
T COG0475 150 GQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT-ESSELFILFVL 228 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHH
Confidence 99999999999999999999999886544433333455556666677666666788888888887654 35788999999
Q ss_pred HHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHH
Q 047130 311 MLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAV 390 (815)
Q Consensus 311 ~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~ 390 (815)
++++.+++++|.+|+|+++|||++|+++++.....++++++++++.+++|+|+||+.+|+++|++.+... +. .+..
T Consensus 229 ~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~--~~--~~l~ 304 (397)
T COG0475 229 LLVLGAAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLEN--LL--LILL 304 (397)
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhcc--HH--HHHH
Confidence 9999999999999999999999999999998543379999999998779999999999999999999876 22 4677
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 047130 391 IVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFL 470 (815)
Q Consensus 391 i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~l 470 (815)
++.+.+++|.+++++.++.+|++.|++...|+.+.++|+++++.++.+.. +.++++.++..+.+++++|.+.+.+.+.+
T Consensus 305 ~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~ 383 (397)
T COG0475 305 LVALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPIL 383 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888899999999999999999999999999999999999999998887 67888999999999999888888888877
Q ss_pred hccc
Q 047130 471 YDPS 474 (815)
Q Consensus 471 y~p~ 474 (815)
++..
T Consensus 384 ~~~~ 387 (397)
T COG0475 384 LKRL 387 (397)
T ss_pred HHHh
Confidence 7543
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=7.4e-40 Score=383.25 Aligned_cols=385 Identities=11% Similarity=0.055 Sum_probs=321.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhh
Q 047130 71 LPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTG 150 (815)
Q Consensus 71 lp~~ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~G 150 (815)
+-.++++++++++++.+++.+++|+++|.+++++++|+++||+++|.++. .+.+..+.++++|+++++|..|
T Consensus 4 ~~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~--------~~~~~~~~i~~l~L~~iLF~~G 75 (562)
T PRK05326 4 INSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQF--------DNYPLAYLVGNLALAVILFDGG 75 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCccc--------CcHHHHHHHHHHHHHHHHHcCc
Confidence 34678999999999999999999999999999999999999999986541 2456789999999999999999
Q ss_pred cccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhh-ccCh
Q 047130 151 VKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRI-INSE 229 (815)
Q Consensus 151 le~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l-l~s~ 229 (815)
+|+|++.+|+.+++++.+++.++++|++++..+++++.. .+|..++++|+++++||++++.++++|+|+ ++++
T Consensus 76 l~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g------~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~ 149 (562)
T PRK05326 76 LRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLG------LDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKER 149 (562)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCHHHHHHHhhhhccCchHHHHHHHhccCCCcchh
Confidence 999999999999999999999999999885544444333 158899999999999999999999999996 7999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHH
Q 047130 230 LGRLGLSCALVSEMIGLILTRSAIWIASIYHAP-LHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHN 308 (815)
Q Consensus 230 ~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~ 308 (815)
+++++.+++.+||.++++++.++..+...+..+ ....++.++..+++.+++++++++++.|+.+|.... .++.+..+
T Consensus 150 v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~--~~~~~~i~ 227 (562)
T PRK05326 150 VASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIALP--AEGLYPIL 227 (562)
T ss_pred HHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhhHHHHH
Confidence 999999999999999999887776654333211 122234445555666677788889999999987432 24567888
Q ss_pred HHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHH
Q 047130 309 IIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKST 388 (815)
Q Consensus 309 ~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~ 388 (815)
++.+++++++++|.+|.|+++|+|++|+++++.++..+...+++.+...+++.|+||+++|+.+|++.+.+. .+. .+
T Consensus 228 ~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~-~~~--~l 304 (562)
T PRK05326 228 VLAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDI-ALP--AL 304 (562)
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHH--HH
Confidence 899999999999999999999999999999998655555566777767899999999999999999887644 221 23
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccc-hhHHHHHHHHHHHHHHHHHHHH
Q 047130 389 AVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLT-DQMFSFLTVEILVTAIIIPILV 467 (815)
Q Consensus 389 ~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~-~~~~~~lv~~~ll~t~i~~~lv 467 (815)
.+.+++.+++|++++++.++.+++++||+..+||. ++||.++++++.++.+.++.+ +..|+++.+++++|+++.++.+
T Consensus 305 ~i~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl 383 (562)
T PRK05326 305 LLALFLILVARPLAVFLSLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTL 383 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhH
Confidence 33345567899999999999999999999999995 899999999999999999886 5678888899999999999999
Q ss_pred Hhhhcccc
Q 047130 468 KFLYDPSR 475 (815)
Q Consensus 468 ~~ly~p~~ 475 (815)
+.+.|+.+
T Consensus 384 ~~~a~~l~ 391 (562)
T PRK05326 384 PWAARKLG 391 (562)
T ss_pred HHHHHHcC
Confidence 88776544
No 8
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=1.4e-35 Score=317.23 Aligned_cols=271 Identities=22% Similarity=0.348 Sum_probs=233.5
Q ss_pred HHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhcc
Q 047130 83 AVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTG 162 (815)
Q Consensus 83 ~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~ 162 (815)
+++.+++.++||+|+|.+++||++|+++||+++|.++ ..+.++.++++|+++++|.+|+|+|++.+||++
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~----------~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~ 71 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLIS----------NVEGVNHLAEFGVILLMFLIGLELDLERLWKLR 71 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCC----------ChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4567789999999999999999999999999998764 245799999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHH-HHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChhHHHHHHHHHHH
Q 047130 163 KKSLFTGLLTLLIP-FLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVS 241 (815)
Q Consensus 163 k~~~~i~~~~~~ip-~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~lals~a~v~ 241 (815)
|++..+++.++++| ++++..++++++. ++..++++|++++.||++++.++++|+|+.+++.|+++++++++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~ 144 (273)
T TIGR00932 72 KAAFGVGVLQVLVPGVLLGLLLGHLLGL-------ALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQ 144 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHH
Confidence 99999999999999 6667666665543 478899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHH
Q 047130 242 EMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISD 321 (815)
Q Consensus 242 D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e 321 (815)
|+++++++.+.......++.+.....+.+...+++.++.+++.++...|+.|+.++.+ .+|.+...++.+++++++++|
T Consensus 145 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~la~ 223 (273)
T TIGR00932 145 DIAVVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELR-PSELFTAGSLLLMFGSAYFAD 223 (273)
T ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHHH
Confidence 9999999988876654222222233344445555555667788899999999887654 357888899999999999999
Q ss_pred HhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCC
Q 047130 322 LFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTN 373 (815)
Q Consensus 322 ~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~d 373 (815)
.+|.|+++|||++|+++++. +.++++.++++++. ++|+|+||+++|+++|
T Consensus 224 ~~g~s~~lgaf~aGl~~~~~-~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 224 LLGLSMALGAFLAGVVLSES-EYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred HhCCcHHHHHHHHHHHHcCC-chHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 99999999999999999997 45788999999998 9999999999999987
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=3e-39 Score=362.44 Aligned_cols=374 Identities=22% Similarity=0.383 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHH
Q 047130 80 VAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQ 159 (815)
Q Consensus 80 lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~ 159 (815)
++++++.+.+.++||+++|.+++|+++|+++||.+++..+. + ....+.++++|+.+++|.+|+|+|.+.+|
T Consensus 3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~--------~-~~~~~~l~~i~l~~llF~~G~~~d~~~l~ 73 (380)
T PF00999_consen 3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEP--------D-NPSFELLAEIGLAFLLFEAGLELDIKELR 73 (380)
T ss_dssp ------------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG---
T ss_pred EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccc--------h-hhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 34455666677899999999999999999999998885431 1 36778999999999999999999999999
Q ss_pred hcchhhHHHHHHHHHHHHHH-HHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChhHHHHHHHH
Q 047130 160 KTGKKSLFTGLLTLLIPFLL-GAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCA 238 (815)
Q Consensus 160 ~~~k~~~~i~~~~~~ip~~~-~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~lals~a 238 (815)
|++|+++.+++.++.+|+++ ++.+++++.. . +.++..++++|.++++||++++.++++|.+..+++.++++++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~ 149 (380)
T PF00999_consen 74 RNWRRALALGLVGFLLPFILVGFLLSFFLFI-L---GLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSES 149 (380)
T ss_dssp --------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTT
T ss_pred cccccccccccceeeehhhHHHHHHHHhhcc-c---hhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhc
Confidence 99999999999999999998 7666643210 0 12578899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCchhHHHHHHHHHHHHH
Q 047130 239 LVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEG-KPVNSLHIHNIIMLALGAG 317 (815)
Q Consensus 239 ~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~-~~~~e~~~~~~l~~~l~~~ 317 (815)
++||+++++++.+.......+. ....+.....++..+....+.+....|+.++..+. ++.++.+..+++++++.++
T Consensus 150 ~i~d~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 226 (380)
T PF00999_consen 150 VINDIIAIILLSILISLAQASG---QSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLY 226 (380)
T ss_dssp TTTTTTTTTTT---------------------------------------------------------------------
T ss_pred hhhccchhhhhhhhhhhhcccc---cccccchhcchhhhhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhc
Confidence 9999999998877766651111 11222222222222333333344444444443322 2456788899999999999
Q ss_pred HHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhc-ccchhHHHHHHHHHHHHH
Q 047130 318 YISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIK-LLDDNLAKSTAVIVAVVV 396 (815)
Q Consensus 318 ~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~-~~~~~~~~~~~~i~~~~~ 396 (815)
+++|.+|.|+++|+|++|+++++. +.++++.++++++.++++.|+||+++|+++|++.+. +...+. ....+.+..+
T Consensus 227 ~~a~~~g~s~~l~af~~Gl~~~~~-~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~--~~~~~~~~~~ 303 (380)
T PF00999_consen 227 GLAEILGLSGILGAFIAGLILSNS-PFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVII--LVLLLLIAIL 303 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccceeeeeehccccc-cccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhh--hHHHHHHHHH
Confidence 999999999999999999999965 677789999999988999999999999999998884 121332 4555666666
Q ss_pred HHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047130 397 LAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYD 472 (815)
Q Consensus 397 ~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~ly~ 472 (815)
++|++++++.+++.++++||+..+|+.|++||+++++++..+.+.|.++++.+++++.++++++.+.|+.++.+.+
T Consensus 304 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~~ 379 (380)
T PF00999_consen 304 LGKFIGVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLLR 379 (380)
T ss_dssp -------------------HHHHTTTTSS--HHHHHHHHHHHHH--------------------------------
T ss_pred HhhhceeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999988887653
No 10
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-33 Score=281.84 Aligned_cols=376 Identities=15% Similarity=0.225 Sum_probs=306.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHh
Q 047130 70 SLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLT 149 (815)
Q Consensus 70 ~lp~~ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~ 149 (815)
..|+ +-.+..-+.++.+++.+..|+|+|+.+||+++|+++||.--|... +......++++|++++||-+
T Consensus 4 ~tpl-i~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFva----------d~~La~~LAelGViLLmFgv 72 (408)
T COG4651 4 DTPL-ITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVA----------DQTLAPELAELGVILLMFGV 72 (408)
T ss_pred CchH-HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCccc----------chhHHHHHHHhhHHHHHHhc
Confidence 3444 445555667788999999999999999999999999997766542 34455699999999999999
Q ss_pred hcccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccCh
Q 047130 150 GVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSE 229 (815)
Q Consensus 150 Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~ 229 (815)
|++++++.+...+.-+.--++.++.+...++...++.+++. +...+.+|.++|..|+.|..|.|.|+++.+++
T Consensus 73 GLhfslkdLLavk~iAipgAl~qia~at~lg~gL~~~lgws-------~~~glvfGlaLS~aSTVvllraLqEr~lidt~ 145 (408)
T COG4651 73 GLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSLLGWS-------FGTGIVFGLALSVASTVVLLRALEERQLIDTQ 145 (408)
T ss_pred chheeHHHHhhHHHHhcchHHHHHHHHHHHHhHHHHHcCCC-------cccceeeeehhhhHHHHHHHHHHHHhcccccc
Confidence 99999999988877777677777777777788888777763 45678999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 047130 230 LGRLGLSCALVSEMIGLILTRSAIWIASIYH---APL----HSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVN 302 (815)
Q Consensus 230 ~g~lals~a~v~D~~~~~ll~v~~~~~~~~~---~~~----~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~ 302 (815)
.||++++.-+++|+..+..+....++++.-+ ... ....+++.+...|+.++.++.|++.+|+..+.... ..+
T Consensus 146 rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~t-Gsr 224 (408)
T COG4651 146 RGRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAAT-GSR 224 (408)
T ss_pred CceEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcH
Confidence 9999999999999999888877766653211 111 12234566888899999999999999999987543 257
Q ss_pred hhHHHHHHHHHHHHHHH-HHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccc
Q 047130 303 SLHIHNIIMLALGAGYI-SDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLD 381 (815)
Q Consensus 303 e~~~~~~l~~~l~~~~i-~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~ 381 (815)
|.+...++..+++.++- ++.+|.++.+|||++|+++.+. ...++..+..-++ .+.|.-+||+.+||..|+..+.+.
T Consensus 225 Elf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~es-elshraa~~slpL-rdaFaVlFFvsVGmlf~P~~l~~~- 301 (408)
T COG4651 225 ELFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAES-ELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMILIQQ- 301 (408)
T ss_pred HHHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcch-hhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHHhhcc-
Confidence 89999999999887755 5789999999999999999997 5667766665555 788999999999999999888766
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHH
Q 047130 382 DNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAI 461 (815)
Q Consensus 382 ~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~ 461 (815)
++ .+...+.+.+++|-+..+...+.++.|.|.++.++..+.+.|+++++++..+.+.+++++.--..++...++ ++
T Consensus 302 pl---~vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~Lvlagail-sI 377 (408)
T COG4651 302 PL---AVLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAIL-SI 377 (408)
T ss_pred hH---HHHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHH-HH
Confidence 44 455666667789999999999999999999999999999999999999999999999986655555444444 55
Q ss_pred HHHHHHHhhh
Q 047130 462 IIPILVKFLY 471 (815)
Q Consensus 462 i~~~lv~~ly 471 (815)
+..|+.....
T Consensus 378 l~nPllf~~~ 387 (408)
T COG4651 378 LLNPLLFALL 387 (408)
T ss_pred HHhHHHHHHH
Confidence 5555555444
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.96 E-value=5.4e-26 Score=263.22 Aligned_cols=356 Identities=10% Similarity=-0.004 Sum_probs=254.9
Q ss_pred HHHHHHHHHHHHHHHHHHh-hhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhccc
Q 047130 75 ELQIIVAFAVTHACHFVLK-RFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKM 153 (815)
Q Consensus 75 ll~i~lil~~~~~~~~llk-rl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~ 153 (815)
++.++..+++..++..++| |+.+|..+.++++|+++||.++|.++... + .......++ ++++++++.+|.+|+++
T Consensus 15 ~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~-~--g~~d~i~le-IteIvL~I~LFa~Gl~L 90 (810)
T TIGR00844 15 YSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLS-W--GNTDSITLE-ISRILLCLQVFAVSVEL 90 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhh-c--ccchHHHHH-HHHHHHHHHHHHHHHhC
Confidence 4444444444455566666 99999999999999999999888654210 0 001233444 99999999999999999
Q ss_pred ChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHH---HhhhccChh
Q 047130 154 DVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVS---DLRIINSEL 230 (815)
Q Consensus 154 d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~---el~ll~s~~ 230 (815)
+.+.+++.++..+.+.+.++.+++++++++++++... .+|..++++|+++++|++.....+++ ..+ ++.++
T Consensus 91 ~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~G-----L~~~~ALLLGAILAPTDPVLAssV~kg~~~~r-vP~rL 164 (810)
T TIGR00844 91 PRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPG-----LNFPASLLMGACITATDPVLAQSVVSGTFAQK-VPGHL 164 (810)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHhhhcCCcHHHHHHHHhcccccc-CChHH
Confidence 9999999999999999999999999888877766321 25899999999999999877777776 223 57888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CchhH
Q 047130 231 GRLGLSCALVSEMIGLILTRSAIWIASIY--HAPL--HSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKP-VNSLH 305 (815)
Q Consensus 231 g~lals~a~v~D~~~~~ll~v~~~~~~~~--~~~~--~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~-~~e~~ 305 (815)
..++.+++.+||.++++++.++..+.... +... ...+..++..+++.++++++++.+..|+.++..+.+. ..+.+
T Consensus 165 R~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~esf 244 (810)
T TIGR00844 165 RNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIIDRESF 244 (810)
T ss_pred HhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 99999999999999998776554443211 1111 1112233333334444444444444454444321111 23456
Q ss_pred HHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhH-HHHhhhhhHHHhhHHHHHHhhcccCChhhhccc----
Q 047130 306 IHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSA-LVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLL---- 380 (815)
Q Consensus 306 ~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~-l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~---- 380 (815)
+.+.++++++++.+++.+|.++++++|++|+++.+...+.+. -...+......++..++|+++|+.+....+...
T Consensus 245 la~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~ 324 (810)
T TIGR00844 245 LAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGL 324 (810)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhH
Confidence 777888888899999999999999999999999986433322 233466667788899999999999988776431
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhc--CCChHHHHHHHHHHhhhhhHHHHHHhhcccccc
Q 047130 381 DDNLAKSTAVIVAVVVLAKVATTMIPPLYC--KVPKRDAFALALIMSTKGIVEISTYNISRNIES 443 (815)
Q Consensus 381 ~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~--~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~ 443 (815)
..|. .+++.+++.++.|..++++...+. ..+++|++++|| .++||..++.++.++++.+.
T Consensus 325 ~~w~--~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 325 DVWR--LIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 1232 344455556677888888764433 478999999999 79999999999999987664
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.95 E-value=1.3e-25 Score=259.74 Aligned_cols=369 Identities=14% Similarity=0.063 Sum_probs=253.2
Q ss_pred HHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHH
Q 047130 80 VAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQ 159 (815)
Q Consensus 80 lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~ 159 (815)
.+++.+.....+++|+++|..++++++|+++||..++... +. +. +.+..+++..++|..|+++|++.+|
T Consensus 5 ~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~-------~~-~~---~~~~~~~Lp~lLF~~g~~~~~~~l~ 73 (525)
T TIGR00831 5 ELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEV-------PL-DR---EIVLFLFLPPLLFEAAMNTDLRELR 73 (525)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCC-------CC-CH---HHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3444555667889999999999999999999986433210 01 11 2344589999999999999999999
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChhHHHHHHHHH
Q 047130 160 KTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCAL 239 (815)
Q Consensus 160 ~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~lals~a~ 239 (815)
|+++..+.+++.++++|++++..+.+++.. .++..++++|+++|+|+++++.+++++.+ .++++.+++.++++
T Consensus 74 ~~~~~i~~la~~~vlit~~~v~~~~~~~~~------l~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gESl 146 (525)
T TIGR00831 74 ENFRPIALIAFLLVVVTTVVVGFSLNWILG------IPLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGESL 146 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhhh
Confidence 999999999999999999986665554432 26899999999999999999999999987 57889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHH
Q 047130 240 VSEMIGLILTRSAIWIASI-YHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGY 318 (815)
Q Consensus 240 v~D~~~~~ll~v~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~ 318 (815)
+||..+++++.++.....+ +..+.......++..++..+++++++..+..|+.++..+. +.....+++++.+++++
T Consensus 147 lND~~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~---~~~~~~l~l~~~~~~y~ 223 (525)
T TIGR00831 147 LNDGAALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDD---PLVEIALTILAPFAGFL 223 (525)
T ss_pred hcchHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHH
Confidence 9999999999877766542 2223333333333333344455555566666666553322 33567788889999999
Q ss_pred HHHHhCchhhHHHHHHHhhcCCCCCc-h-----hHHHHhhhhhHHHhhHHHHHHhhcccCChhhh--cc-cc-hhHHHH-
Q 047130 319 ISDLFGQHVYFGPFVFGLAVPAGPPL-G-----SALVEKLDPMVSGLFIPLVVTSASMRTNLSDI--KL-LD-DNLAKS- 387 (815)
Q Consensus 319 i~e~~G~~~~lGafvaGl~~~~~~~~-~-----~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l--~~-~~-~~~~~~- 387 (815)
++|.+|.|+++++|++|+++++..+. . +.-.+.+......++.+++|+++|++++.... .. .. .+....
T Consensus 224 lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~ 303 (525)
T TIGR00831 224 LAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVIL 303 (525)
T ss_pred HHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence 99999999999999999999986433 1 12234566667789999999999999864211 11 00 000000
Q ss_pred -----HHHHHHHHHHHHHHHHHHhh-------hhcCCChHHHHHHHHHHhhhhhHHHHHHhhcc-c--cc--c-----cc
Q 047130 388 -----TAVIVAVVVLAKVATTMIPP-------LYCKVPKRDAFALALIMSTKGIVEISTYNISR-N--IE--S-----LT 445 (815)
Q Consensus 388 -----~~~i~~~~~~~K~i~~~l~~-------~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~-~--~~--~-----i~ 445 (815)
.+++.......|++.++... ...++++|+.+.++| .+.||.++++++...- . .+ . +-
T Consensus 304 ~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i~ 382 (525)
T TIGR00831 304 ALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYELV 382 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHHH
Confidence 11111122344554433321 112578999999999 5999999999775321 1 11 1 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh
Q 047130 446 DQMFSFLTVEILVTAIIIPILVKFL 470 (815)
Q Consensus 446 ~~~~~~lv~~~ll~t~i~~~lv~~l 470 (815)
.-++.++++++++.....||+++++
T Consensus 383 ~~~~~vVl~TllvqG~tlp~l~r~l 407 (525)
T TIGR00831 383 FLAAGVILFSLLVQGISLPIFVKRK 407 (525)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 2233444455555555556666654
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3.3e-22 Score=225.20 Aligned_cols=378 Identities=15% Similarity=0.121 Sum_probs=283.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcc
Q 047130 73 RLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVK 152 (815)
Q Consensus 73 ~~ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle 152 (815)
..++++.+++++......+.+|+..|.+..+++.|++.||.+++..+. .....-+.+-.+++..++|..|++
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~--------~~~~~~el~~~l~l~ilLf~~g~~ 77 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISP--------DLELDPELFLVLFLAILLFAGGLE 77 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccc--------cccCChHHHHHHHHHHHHHHhHhc
Confidence 457788888889999999999999999999999999999988877542 112222334489999999999999
Q ss_pred cChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChhHH
Q 047130 153 MDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGR 232 (815)
Q Consensus 153 ~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~ 232 (815)
+|.+.+||+++....+++.+++++.+....+.+++.+ ..++..++.+|+++|+|++.++.+++++.+ .+.++.+
T Consensus 78 l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~-----~i~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~ 151 (429)
T COG0025 78 LDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP-----GIPLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRT 151 (429)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----ChhHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHH
Confidence 9999999999999999999999998876666666532 236889999999999999999999999866 6889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHH
Q 047130 233 LGLSCALVSEMIGLILTRSAIWIASI-YHAPLHSAYRNLG----IMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIH 307 (815)
Q Consensus 233 lals~a~v~D~~~~~ll~v~~~~~~~-~~~~~~~~~~~~~----~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~ 307 (815)
+..+++++||..+++++.+....... +..+.......++ ..++...+.+++.+++.+++.+|- .. .......
T Consensus 152 iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~--~~-~~~~~~~ 228 (429)
T COG0025 152 ILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRG--WT-SPLLETL 228 (429)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cc-chHHHHH
Confidence 99999999999999999877776542 2222233333333 333344444445455554444432 11 1346788
Q ss_pred HHHHHHHHHHHHHHHhCchhhHHHHHHHhhcC---C--CCCch-hHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccc
Q 047130 308 NIIMLALGAGYISDLFGQHVYFGPFVFGLAVP---A--GPPLG-SALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLD 381 (815)
Q Consensus 308 ~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~---~--~~~~~-~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~ 381 (815)
+.+...+..+.++|.+|.|++++.+++|++.. . ..+.. +...+.+.+....++.-+.|+..|++++...+...
T Consensus 229 i~L~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~- 307 (429)
T COG0025 229 LTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLAL- 307 (429)
T ss_pred HHHHHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh-
Confidence 89999999999999999999999999998774 1 11222 34455577777888999999999999998877654
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhcC------CChHHHHHHHHHHhhhhhHHHHHHhhcccc-c-----ccchhHH
Q 047130 382 DNLAKSTAVIVAVVVLAKVATTMIPPLYCK------VPKRDAFALALIMSTKGIVEISTYNISRNI-E-----SLTDQMF 449 (815)
Q Consensus 382 ~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~------~~~~~~~~lgl~m~~kG~v~li~~~~~~~~-~-----~i~~~~~ 449 (815)
.+. .+++.++..+++|++++++..+..+ .+++|+++++| -++||.++++++...... . .+-.-.+
T Consensus 308 ~~~--~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~ 384 (429)
T COG0025 308 GLL--GLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVF 384 (429)
T ss_pred hHH--HHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHH
Confidence 332 4667777778999999999998843 89999999999 599999999987765422 1 1222334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 047130 450 SFLTVEILVTAIIIPILVKFLY 471 (815)
Q Consensus 450 ~~lv~~~ll~t~i~~~lv~~ly 471 (815)
..++.++++.+...||+.+++.
T Consensus 385 ~vIl~Sl~v~g~t~~~l~~~~~ 406 (429)
T COG0025 385 LVILFSLLVQGLTLPPLAKKLE 406 (429)
T ss_pred HHHHHHHHHHhhhHHHHHHHhc
Confidence 4445555555555566666544
No 14
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.3e-23 Score=218.47 Aligned_cols=381 Identities=13% Similarity=0.102 Sum_probs=308.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHh
Q 047130 70 SLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLT 149 (815)
Q Consensus 70 ~lp~~ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~ 149 (815)
++..+++.-.++++++.+...+..|+|.|..+-.+..|++.|--++|.++. ++.+....++++++++++|..
T Consensus 4 t~~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~f--------dNy~~Ay~vg~lALaiILfdg 75 (574)
T COG3263 4 TINLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEF--------DNYPFAYMVGNLALAIILFDG 75 (574)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCccccccc--------CccHHHHHHHHHHHHHHhhcC
Confidence 344555666678888889999999999999999999999999999998762 456778899999999999999
Q ss_pred hcccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccCh
Q 047130 150 GVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSE 229 (815)
Q Consensus 150 Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~ 229 (815)
|+.++++.+|...++++.++..+++++-.+...+++++.+. +|.+++++|++...|+.+.+..+|.+++ +|.+
T Consensus 76 G~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l------~wle~~LiGAiVgSTDAAAVF~lL~~~n-l~er 148 (574)
T COG3263 76 GFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNL------DWLEGLLIGAIVGSTDAAAVFSLLGGKN-LNER 148 (574)
T ss_pred ccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHhhccccHHHHHHHHccCC-hhhh
Confidence 99999999999999999999999999998877777666552 6999999999999999999999998888 5889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHH
Q 047130 230 LGRLGLSCALVSEMIGLILTRSAIWIASIYHAPL-HSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHN 308 (815)
Q Consensus 230 ~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~ 308 (815)
++.+..-++--||-+++++..-+..+...+..+. ...+..++..+++.++.++....+..|+++|+.-. +..|..+
T Consensus 149 v~stLEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nLd---~GL~pil 225 (574)
T COG3263 149 VASTLEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINLD---SGLYPIL 225 (574)
T ss_pred hhhhEEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccc---cchhHHH
Confidence 9999999999999999988754444433322211 12222355667788888899999999999998432 4578899
Q ss_pred HHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCch-hHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHH
Q 047130 309 IIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLG-SALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKS 387 (815)
Q Consensus 309 ~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~-~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~ 387 (815)
++...+..+.+++.+|.|++++.+++|+.+.|.+-.. +.+.+-.+.+ .++.--+.|...|+.++++++... ... .
T Consensus 226 ~la~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~~i-avP--a 301 (574)
T COG3263 226 ALAGGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLLPI-AIP--A 301 (574)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhhHh-hHH--H
Confidence 9999999999999999999999999999999985333 3455555555 678888889999999999887754 222 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchh-HHHHHHHHHHHHHHHHHHH
Q 047130 388 TAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQ-MFSFLTVEILVTAIIIPIL 466 (815)
Q Consensus 388 ~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~-~~~~lv~~~ll~t~i~~~l 466 (815)
+++-+.+.+++|.+++|+...-++.++||.++++| -+-||.++++++.+..-.|.=+.+ .|++..+.++++..+.+..
T Consensus 302 ilL~l~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlliQG~t 380 (574)
T COG3263 302 ILLSLWMIFVARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLIQGST 380 (574)
T ss_pred HHHHHHHHHHHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHHccCc
Confidence 55566667899999999999999999999999999 599999999999998877765443 5677777777777776666
Q ss_pred HHhhhcc
Q 047130 467 VKFLYDP 473 (815)
Q Consensus 467 v~~ly~p 473 (815)
+.+..|+
T Consensus 381 l~~~a~~ 387 (574)
T COG3263 381 LPWAAKK 387 (574)
T ss_pred chHHHHh
Confidence 6665543
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.89 E-value=1.3e-20 Score=217.90 Aligned_cols=372 Identities=11% Similarity=0.058 Sum_probs=251.3
Q ss_pred HHHHHHHHH-hhh-CCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhc
Q 047130 84 VTHACHFVL-KRF-GIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKT 161 (815)
Q Consensus 84 ~~~~~~~ll-krl-~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~ 161 (815)
++.+...+. |+. ++|..+..++.|+++|+...+... ....-+ .-+.+-.+.+..++|..|+++|.+.++++
T Consensus 20 ~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~-~~~~~l------~~~lf~~~~LPpIlFe~g~~l~~~~f~~n 92 (559)
T TIGR00840 20 LAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPH-IDPPTL------DSSYFFLYLLPPIVLDAGYFMPQRNFFEN 92 (559)
T ss_pred HHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCC-CccCCc------CHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 333444434 444 499999999999999985433211 000011 12455567888999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChhHHHHHHHHH
Q 047130 162 GKKSLFTGLLTLLIPFLLGAAALEKMSRILG--IGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCAL 239 (815)
Q Consensus 162 ~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~--~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~lals~a~ 239 (815)
.+..+.+++.+++++.++.....+++....+ ....++..++.+|+++|+|++..+..++++.+ .+.++-.++.++++
T Consensus 93 ~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gESl 171 (559)
T TIGR00840 93 LGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGESL 171 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehhhh
Confidence 9999999999999998775555554332111 11236889999999999999999999999988 58899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc--CCChhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHH
Q 047130 240 VSEMIGLILTRSAIWIASIY--HAPLHS---AYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLAL 314 (815)
Q Consensus 240 v~D~~~~~ll~v~~~~~~~~--~~~~~~---~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~~l~~~l 314 (815)
+||..+++++.++..+...+ ..+... ....++...+..+++++++..+..++.|+....+ .....+++++.+
T Consensus 172 lNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~~---~~e~~l~l~~~y 248 (559)
T TIGR00840 172 LNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHIR---QIEPLFVFLISY 248 (559)
T ss_pred hhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---hhHHHHHHHHHH
Confidence 99999999997777654321 111111 1111111111244555666666777777764432 355677888899
Q ss_pred HHHHHHHHhCchhhHHHHHHHhhcCCC-----CCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHH
Q 047130 315 GAGYISDLFGQHVYFGPFVFGLAVPAG-----PPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTA 389 (815)
Q Consensus 315 ~~~~i~e~~G~~~~lGafvaGl~~~~~-----~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~ 389 (815)
++++++|.+|.|++++.+++|+++.+. .+..+.-.+.+......++..+.|++.|+.+.... ..+.|. .++
T Consensus 249 l~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~--~~~~~~--~i~ 324 (559)
T TIGR00840 249 LSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTEN--HEWNWA--FVV 324 (559)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hhHHHH--HHH
Confidence 999999999999999999999999653 22222233455566677888999999999763221 111332 233
Q ss_pred HHHHHHHHHHHHHHHHhhhh------cCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchh-HHHH----HHHHHHH
Q 047130 390 VIVAVVVLAKVATTMIPPLY------CKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQ-MFSF----LTVEILV 458 (815)
Q Consensus 390 ~i~~~~~~~K~i~~~l~~~~------~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~-~~~~----lv~~~ll 458 (815)
+.+++.+++|++++++.++. .+.+++|.+.++| .+.||.++++++....+.+.-..+ ..++ +++++++
T Consensus 325 ~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~Tvlv 403 (559)
T TIGR00840 325 ATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFTVIF 403 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHHHHH
Confidence 44455568899888876543 3589999999999 589999999988755433322222 2222 2333333
Q ss_pred HHHHHHHHHHhhh
Q 047130 459 TAIIIPILVKFLY 471 (815)
Q Consensus 459 ~t~i~~~lv~~ly 471 (815)
.....+|+++++.
T Consensus 404 qG~T~~pl~~~L~ 416 (559)
T TIGR00840 404 QGGTIKPLVEVLK 416 (559)
T ss_pred HHhhHHHHHHHhC
Confidence 3344567777654
No 16
>PRK11175 universal stress protein UspE; Provisional
Probab=99.81 E-value=5.1e-19 Score=192.56 Aligned_cols=274 Identities=10% Similarity=0.069 Sum_probs=174.6
Q ss_pred eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhc-C
Q 047130 496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKN-W 574 (815)
Q Consensus 496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~ 574 (815)
|||+|+|+++++..+++.+..++ ++.+++++++|+++-+....+......... .......++..+.++++.+.. .
T Consensus 5 ~ILv~~D~s~~~~~al~~a~~lA--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ 80 (305)
T PRK11175 5 NILVVIDPNQDDQPALRRAVYLA--QRNGGKITAFLPIYDFSYEMTTLLSPDERE--AMRQGVISQRTAWIREQAKPYLD 80 (305)
T ss_pred eEEEEcCCCccccHHHHHHHHHH--HhcCCCEEEEEeccCchhhhhcccchhHHH--HHHHHHHHHHHHHHHHHHHHHhh
Confidence 69999999999999999999998 557789999998863321111110000000 000001112222333333221 1
Q ss_pred cceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEeccCCccc
Q 047130 575 GTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGRIGR 654 (815)
Q Consensus 575 ~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdrg~~~~ 654 (815)
.+++++..+... .+.+++|++.|+++++||||+|+|++.+..+.+.++ +.+++++++||||.++.++..
T Consensus 81 ~~~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs------~~~~l~~~~~~pvlvv~~~~~--- 149 (305)
T PRK11175 81 AGIPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTP------TDWHLLRKCPCPVLMVKDQDW--- 149 (305)
T ss_pred cCCceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccCh------hHHHHHhcCCCCEEEeccccc---
Confidence 456777765432 488999999999999999999999987766655444 445999999999999875421
Q ss_pred ccccccccCCcceEEEEecCCccH-------HHHHHHHHHHhhCC-CeEEEEEEeeecCccc--------cccchhhhhH
Q 047130 655 FISSELSLGSSFRVAMIFLGGSDD-------REALTLAKRMSQNT-SINLTVFRFIVKTDEM--------ISTNWEKVLD 718 (815)
Q Consensus 655 ~~~~~~~~~~~~~I~~~f~gg~Dd-------reAL~~a~rma~~~-~v~ltvl~~~~~~~~~--------~~~~~~~~~d 718 (815)
...++|+++.+|+++. ..|+.+|.++|+.. +++++++++..+.... ..++.++...
T Consensus 150 --------~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (305)
T PRK11175 150 --------PEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIR 221 (305)
T ss_pred --------CCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHHH
Confidence 1257999999998753 67999999999998 9999999987531100 0011111111
Q ss_pred ---HHHHHHhcccCCCC-CCEEEEEEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhh
Q 047130 719 ---SEVLKEVKPENNFN-QRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCL 794 (815)
Q Consensus 719 ---~~~l~~~~~~~~~~-~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~l 794 (815)
++.++++..+.... ......+-.. .+++.+++++.+. ||++||++++ +|+.+| =+|-..+-+
T Consensus 222 ~~~~~~l~~~~~~~~~~~~~~~v~~G~~--~~~I~~~a~~~~~--DLIVmG~~~~------~~~~~~----llGS~a~~v 287 (305)
T PRK11175 222 GQHLLAMKALRQKFGIDEEQTHVEEGLP--EEVIPDLAEHLDA--ELVILGTVGR------TGLSAA----FLGNTAEHV 287 (305)
T ss_pred HHHHHHHHHHHHHhCCChhheeeccCCH--HHHHHHHHHHhCC--CEEEECCCcc------CCCcce----eecchHHHH
Confidence 12334443322111 1111111111 2336677777555 9999999988 677665 578888888
Q ss_pred hcCCCCCcccEEEEe
Q 047130 795 VTEDLPGRYSVLVVQ 809 (815)
Q Consensus 795 as~d~~~~~SvLvvq 809 (815)
+.. .+.+||||.
T Consensus 288 ~~~---~~~pVLvv~ 299 (305)
T PRK11175 288 IDH---LNCDLLAIK 299 (305)
T ss_pred Hhc---CCCCEEEEc
Confidence 877 677999995
No 17
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.74 E-value=3.1e-15 Score=164.45 Aligned_cols=304 Identities=15% Similarity=0.153 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccChh-------HHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHH
Q 047130 133 TLDLVATFGYILFQFLTGVKMDVS-------MIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVT 205 (815)
Q Consensus 133 ~l~~la~lgli~~lF~~Gle~d~~-------~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig 205 (815)
..+.+.+.-+.+|.|.+|+|+.-+ ..||..-. ..-++.|+++|.++-.+ +.. +. ....--+
T Consensus 62 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPaliy~~----~n~--~~----~~~~~GW- 129 (423)
T PRK14853 62 LGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPALIYVA----VNL--AG----GGALRGW- 129 (423)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHHHHHHH----HhC--Cc----hhhhhhh-
Confidence 345566666788999999999544 33333322 45678888888864332 221 10 0001111
Q ss_pred HHHhhccHHHHHHHHHHhhh-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 047130 206 VVHSLSRFPSIACLVSDLRI-INSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVV 284 (815)
Q Consensus 206 ~~ls~Ts~~vv~~iL~el~l-l~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~ 284 (815)
.+-+.|+.+....+|+.+|- .++.++...++.|++||+.++++++++. +++.+ ..+.......++ +
T Consensus 130 ~Ip~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY----t~~i~---~~~L~~a~~~~~--~---- 196 (423)
T PRK14853 130 AIPTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY----TSELN---LEALLLALVPLA--L---- 196 (423)
T ss_pred hhhhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc----CCCCC---HHHHHHHHHHHH--H----
Confidence 23456888999999999875 4889999999999999999999888766 22222 122221111111 1
Q ss_pred HHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCC-----------CchhHHHHhhh
Q 047130 285 RPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGP-----------PLGSALVEKLD 353 (815)
Q Consensus 285 r~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~-----------~~~~~l~~kl~ 353 (815)
.|+.+|.+ +++.+.++++. +++.+..+..|+|+.+|+|++|+++|..+ +..++++++++
T Consensus 197 ----l~~l~~~~----V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~ 266 (423)
T PRK14853 197 ----FWLLVQKR----VRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLR 266 (423)
T ss_pred ----HHHHHHcC----CchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHH
Confidence 13333332 44455666553 36777899999999999999999999521 23578999999
Q ss_pred hhHHHhhHHHH-HHhhcccCCh-hhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhc----------CCChHHHHHHH
Q 047130 354 PMVSGLFIPLV-VTSASMRTNL-SDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYC----------KVPKRDAFALA 421 (815)
Q Consensus 354 ~~~~~l~lPlF-F~~~G~~~dl-~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lg 421 (815)
+++..+++|+| |+..|.++|. ..+.+...-. ....+++..+++|.+|.+..++.. +++|++-..+|
T Consensus 267 p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~p--v~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~ 344 (423)
T PRK14853 267 PLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDP--IVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVA 344 (423)
T ss_pred HHHHHHHHHHHHHHHhhheecCchhHHHHhhch--HHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHH
Confidence 99999999999 9999999986 4341111100 245667777899999988776643 47889998888
Q ss_pred HHHhhhhhHHHHHHhhccc-ccccchhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047130 422 LIMSTKGIVEISTYNISRN-IESLTDQMFSFLTVEILVTAIIIPILVKFLYDP 473 (815)
Q Consensus 422 l~m~~kG~v~li~~~~~~~-~~~i~~~~~~~lv~~~ll~t~i~~~lv~~ly~p 473 (815)
++-+.-=++++-+.+.+++ .....++.=-.+.+.++++.+++-.+++...++
T Consensus 345 ~L~GIGFTmSlFI~~LAf~~~~~~~~~aKigil~~S~~s~~~G~~~l~~~~~~ 397 (423)
T PRK14853 345 LLAGIGFTVSLLIGELAFGGGSARDDAVKVGVLTGSLIAALLASVLLRLRNRK 397 (423)
T ss_pred HHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8666666788888888884 222222332333444555555555555544433
No 18
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.1e-14 Score=150.01 Aligned_cols=350 Identities=9% Similarity=0.031 Sum_probs=246.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccC
Q 047130 75 ELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMD 154 (815)
Q Consensus 75 ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d 154 (815)
+..-+.+.+++..--++-+++-+...+--.+.|+++||++++...... -.+.......++.+-+..-.|.++.|+.
T Consensus 16 ~~~g~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~----wgn~d~it~ei~RvvLcvqvfava~eLP 91 (467)
T KOG4505|consen 16 AASGGFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNS----WGNKDYITYEISRVVLCVQVFAVAMELP 91 (467)
T ss_pred HHHhhHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCcc----ccCcchhhhhhhhhhHhHHHHHHHHhcc
Confidence 333344445555555566677777778888999999999998754211 0122345667889999999999999999
Q ss_pred hhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhh---ccChhH
Q 047130 155 VSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRI---INSELG 231 (815)
Q Consensus 155 ~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l---l~s~~g 231 (815)
-..+.++++..+.+-+.-+++-+...+.+.|.+.... ....++.++.++++|++.....+..+-+. .+.++.
T Consensus 92 r~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p~l-----nf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR 166 (467)
T KOG4505|consen 92 RAYMLEHWRSIFVLLLPVMIIGWLVSFGFVYALIPNL-----NFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIR 166 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHH
Confidence 9999999998877765555555555555555554322 46789999999999996666666654433 456777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---Ch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchh
Q 047130 232 RLGLSCALVSEMIGLILTRSAIWIASIYHA---PL----HSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSL 304 (815)
Q Consensus 232 ~lals~a~v~D~~~~~ll~v~~~~~~~~~~---~~----~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~ 304 (815)
.+..+++..||.++++++-+..-+...+.. .- ...++.....+.+..+++++.|..++.-.++.--+ .|+
T Consensus 167 ~lL~AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid---~eS 243 (467)
T KOG4505|consen 167 NLLAAESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLID---RES 243 (467)
T ss_pred HHHHHhcCCCCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---HHH
Confidence 889999999999999988776655432211 00 12334444445566667777777776665554333 578
Q ss_pred HHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhHH-HHhhhhhHHHhhHHHHHHhhcccCChhhhcccc--
Q 047130 305 HIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSAL-VEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLD-- 381 (815)
Q Consensus 305 ~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l-~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~-- 381 (815)
++.+-+++++.|+.+.+.+|.+-.+-.|.||.+++...-+.++. ..++..+...++--.||++.|..++.+.++...
T Consensus 244 fl~~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~g 323 (467)
T KOG4505|consen 244 FLIFYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEG 323 (467)
T ss_pred HHHHHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccC
Confidence 99999999999999999999999999999999999876555444 346777777778888999999999998876441
Q ss_pred --hhHHHHHHHHHHHHHHH-HHHHHHHhhhhcC--CChHHHHHHHHHHhhhhhHHHHHHhhccc
Q 047130 382 --DNLAKSTAVIVAVVVLA-KVATTMIPPLYCK--VPKRDAFALALIMSTKGIVEISTYNISRN 440 (815)
Q Consensus 382 --~~~~~~~~~i~~~~~~~-K~i~~~l~~~~~~--~~~~~~~~lgl~m~~kG~v~li~~~~~~~ 440 (815)
.| ..+++.++.++. |+-.+++.-.+.. .+|||+++.|. .+|.|.-++..+..+..
T Consensus 324 l~vw---rlvilsi~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar~ 383 (467)
T KOG4505|consen 324 LPVW---RLVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLARK 383 (467)
T ss_pred chHH---HHHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHHh
Confidence 23 344444444444 4444443322221 57999999999 79999999888776643
No 19
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.59 E-value=8.2e-14 Score=155.52 Aligned_cols=382 Identities=12% Similarity=0.056 Sum_probs=245.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhC---CChhHHHHHhhhhcccccccccccc-----cccccCCCchhHHHHHHHHHHHHHH
Q 047130 75 ELQIIVAFAVTHACHFVLKRFG---IPMIASQITGGLILGQAIPGLNRYY-----KHVLFSDTSLGTLDLVATFGYILFQ 146 (815)
Q Consensus 75 ll~i~lil~~~~~~~~llkrl~---~P~iv~~IlaGillGP~~lg~~~~~-----~~~lfp~~~~~~l~~la~lgli~~l 146 (815)
++-.+.++.++.+..+++++-| +|.-+.-++.|+++|-......... ....|.+ +.+-.+-+--+.
T Consensus 37 l~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~------~~ff~vLLPpii 110 (575)
T KOG1965|consen 37 LLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSP------DLFFLVLLPPII 110 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecc------cHHHHHhhchhh
Confidence 4445555666778999999988 9999999999999995432211111 1112221 122234455578
Q ss_pred HHhhcccChhHHHhcchhhHHHHHHHHHHHHHH-HHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhh
Q 047130 147 FLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLL-GAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRI 225 (815)
Q Consensus 147 F~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~-~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l 225 (815)
|..|.+++.+.++|+.......++.|..+...+ |.++.++... ......++..++++|+++|+|++..+..++.|++
T Consensus 111 f~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~-~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~- 188 (575)
T KOG1965|consen 111 FNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFG-LLIYDLSFKDCLAFGALISATDPVTVLAIFNELG- 188 (575)
T ss_pred hcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcc-cccccccHHHHHHHhhHhcccCchHHHHHHHHhC-
Confidence 999999999999999999999999988777554 5554444322 2223346899999999999999999999999998
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 047130 226 INSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLH--SAY----RNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGK 299 (815)
Q Consensus 226 l~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~--~~~----~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~ 299 (815)
....+-.++-+++++||..+++++............+.. ..+ ..+....+..+.++++. ..+.|.+--++
T Consensus 189 vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~Glis----A~~lK~~~l~~ 264 (575)
T KOG1965|consen 189 VDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLIS----ALVLKFLYLRR 264 (575)
T ss_pred CCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcC
Confidence 466788899999999999999999777665432211111 111 22222222222222222 22333322221
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCC-----CchhHHHHhhhhhHHHhhHHHHHHhhccc-CC
Q 047130 300 PVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGP-----PLGSALVEKLDPMVSGLFIPLVVTSASMR-TN 373 (815)
Q Consensus 300 ~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~-----~~~~~l~~kl~~~~~~l~lPlFF~~~G~~-~d 373 (815)
.......+.+++....++++|.+|+++++..+..|+++++.. +..+.-.+.+-.+.+.+.--+-|+++|+. ++
T Consensus 265 -~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~ 343 (575)
T KOG1965|consen 265 -TPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFD 343 (575)
T ss_pred -CcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence 234567888999999999999999999999999999999752 22333344455555777788889999963 34
Q ss_pred hhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcC----------CChHHHHHHHHHHhhhhhHHHHHHhhcc-cc-
Q 047130 374 LSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCK----------VPKRDAFALALIMSTKGIVEISTYNISR-NI- 441 (815)
Q Consensus 374 l~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~----------~~~~~~~~lgl~m~~kG~v~li~~~~~~-~~- 441 (815)
.........+ .+....++.+++|..-.+..+.+.+ .|.++-..+.|.=.-||.++++++.--. +.
T Consensus 344 ~~k~~~~~~~---fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~ 420 (575)
T KOG1965|consen 344 FQKHVYKSLQ---FVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSP 420 (575)
T ss_pred ccceeeechH---HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccc
Confidence 3333322111 2444555556778777776665554 3444455666644479999988775322 11
Q ss_pred ----cccchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047130 442 ----ESLTDQMFSFLTVEILVTAIIIPILVKFLYD 472 (815)
Q Consensus 442 ----~~i~~~~~~~lv~~~ll~t~i~~~lv~~ly~ 472 (815)
+.+-..+..++++.+++....+.|+++++-.
T Consensus 421 ~~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~ 455 (575)
T KOG1965|consen 421 HTGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMI 455 (575)
T ss_pred cccccEEEEeeeeeeeeeeeeeCCccHHHHHHhcc
Confidence 2222333344444444445567899988663
No 20
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.50 E-value=1.7e-13 Score=129.40 Aligned_cols=131 Identities=16% Similarity=0.266 Sum_probs=98.3
Q ss_pred eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcCc
Q 047130 496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWG 575 (815)
Q Consensus 496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 575 (815)
|||+|+++++++..+++.+..+++ +.+.+++++|+++.+....+ +.. .......++..+.+.+..+. .
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~--~~~~~v~ll~v~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~--~ 68 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALAR--AQNGEIIPLNVIEVPNHSSP----SQL----EVNVQRARKLLRQAERIAAS--L 68 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhh--cCCCeEEEEEEEecCCCCCc----chh----HHHHHHHHHHHHHHHHHhhh--c
Confidence 699999999999999999999994 47889999999997654321 100 00112234445555554443 4
Q ss_pred ceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130 576 TACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL 646 (815)
Q Consensus 576 ~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl 646 (815)
++.++..+..+ .++.++||+.|+++++|+||||+|++++..+.+ +|+++.+|++++||||+|+
T Consensus 69 g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~------lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 69 GVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLRDRL------FGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred CCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCcccee------cCchHHHHHhcCCCCEEEe
Confidence 56777777665 479999999999999999999999998765444 5566679999999999986
No 21
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.40 E-value=5.3e-11 Score=128.79 Aligned_cols=270 Identities=14% Similarity=0.128 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHHHHHhhcccChhHHH---hcchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhccC-cchHHHHHHHH
Q 047130 133 TLDLVATFGYILFQFLTGVKMDVSMIQ---KTGKKS---LFTGLLTLLIPFLLGAAALEKMSRILGIG-MEDKMKLWVVT 205 (815)
Q Consensus 133 ~l~~la~lgli~~lF~~Gle~d~~~l~---~~~k~~---~~i~~~~~~ip~~~~~~~~~~l~~~~~~~-~~~~~~~l~ig 205 (815)
..+.+.+.-+.+|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++-.. +... ++. ...| |
T Consensus 52 l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~~----~n~~-~~~~~~GW------~ 120 (373)
T TIGR00773 52 LLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYLA----FNAN-DPITREGW------A 120 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhh----eecC-CCcccCcc------c
Confidence 445566666788999999999887764 233333 34567777888764222 2110 000 0112 1
Q ss_pred HHH-hhccHHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 047130 206 VVH-SLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVV 284 (815)
Q Consensus 206 ~~l-s~Ts~~vv~~iL~el~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~ 284 (815)
+-. +=++|++-.-.+-..+ .+..+....++-|++||+.+++++++... ++-+ ..+......++.
T Consensus 121 IP~ATDiAFalgvlallG~~-vP~~lr~FLl~LAIvDDlgaI~vIA~FYt----~~i~---~~~L~~a~~~~~------- 185 (373)
T TIGR00773 121 IPAATDIAFALGVMALLGKR-VPLALKIFLLALAIIDDLGAIVIIALFYT----NDLS---MAALLVAAVAIA------- 185 (373)
T ss_pred cccHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhHhheeeecC----CCCC---HHHHHHHHHHHH-------
Confidence 111 1123333332222222 56677889999999999999887776552 2222 222222222111
Q ss_pred HHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCch----hHHHHhhhhhHHHhh
Q 047130 285 RPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLG----SALVEKLDPMVSGLF 360 (815)
Q Consensus 285 r~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~----~~l~~kl~~~~~~l~ 360 (815)
..++.+|.. +++...+..+.. +..+++ ...|+|+.+|+|++|+++|..++.. +++++.+++.+..++
T Consensus 186 ---~l~~~~~~~----v~~~~~y~~lgv-llW~~~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~li 256 (373)
T TIGR00773 186 ---VLAVLNRCG----VRRLGPYMLVGV-ILWFAV-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLI 256 (373)
T ss_pred ---HHHHHHHcC----CchhhHHHHHHH-HHHHHH-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHH
Confidence 113334432 333444444333 333333 7999999999999999999864443 455666666688999
Q ss_pred HHHH-HHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhc----------CCChHHHHHHHHHHhhhhh
Q 047130 361 IPLV-VTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYC----------KVPKRDAFALALIMSTKGI 429 (815)
Q Consensus 361 lPlF-F~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~m~~kG~ 429 (815)
+|+| |+..|.++|...+.....+ ....+++..+++|.+|++..++.. +++|++-..+|++-+.-=+
T Consensus 257 lPlFAFanAGv~l~~~~~~~~~~~---v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFT 333 (373)
T TIGR00773 257 LPLFAFANAGVSLQGVSLNGLTSM---LPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFT 333 (373)
T ss_pred HHHHHHHhcCeeeecCcchhhcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999 9999999986554332123 456777778899999999887644 4788998888886555567
Q ss_pred HHHHHHhhccc
Q 047130 430 VEISTYNISRN 440 (815)
Q Consensus 430 v~li~~~~~~~ 440 (815)
+++-+.+.+++
T Consensus 334 mSlfI~~LAf~ 344 (373)
T TIGR00773 334 MSIFIASLAFG 344 (373)
T ss_pred HHHHHHHHhcC
Confidence 78888888884
No 22
>PRK15456 universal stress protein UspG; Provisional
Probab=99.36 E-value=4.4e-12 Score=121.86 Aligned_cols=136 Identities=10% Similarity=0.050 Sum_probs=93.1
Q ss_pred ceeEEeeecCC--ChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHh
Q 047130 495 LRILACIYRPD--NIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEK 572 (815)
Q Consensus 495 lrILv~i~~~~--~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 572 (815)
-|||+|+|+++ ++..+++.+..++. .. .+++++|+++-.... .. ...............+...+.++++.+.
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~--~~-~~l~llhv~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQ--DD-GVIHLLHVLPGSASL--SL-HRFAADVRRFEEHLQHEAEERLQTMVSH 76 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHh--cC-CeEEEEEEecCcccc--cc-cccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 37999999984 89999999999984 33 489999998754211 00 0000000000011123344455555543
Q ss_pred cC-cceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130 573 NW-GTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL 646 (815)
Q Consensus 573 ~~-~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl 646 (815)
.. .++++++.+..+ +..++|++.|+++++||||||.||+. ..+.+.||.++ +|++++||||.|+
T Consensus 77 ~~~~~~~v~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~llGS~a~------~v~~~a~~pVLvV 141 (142)
T PRK15456 77 FTIDPSRIKQHVRFG---SVRDEVNELAEELGADVVVIGSRNPS-ISTHLLGSNAS------SVIRHANLPVLVV 141 (142)
T ss_pred hCCCCcceEEEEcCC---ChHHHHHHHHhhcCCCEEEEcCCCCC-ccceecCccHH------HHHHcCCCCEEEe
Confidence 22 456778777666 89999999999999999999999974 55556555555 9999999999986
No 23
>PRK15005 universal stress protein F; Provisional
Probab=99.35 E-value=7.1e-12 Score=120.50 Aligned_cols=137 Identities=18% Similarity=0.121 Sum_probs=92.6
Q ss_pred eeEEeeecCCC--hHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhc
Q 047130 496 RILACIYRPDN--IPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKN 573 (815)
Q Consensus 496 rILv~i~~~~~--~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 573 (815)
|||+|+|++++ +..+++.+..++ +..+.+++++|+++............. ..........++..+.++++.+..
T Consensus 4 ~ILv~~D~s~~~~~~~a~~~a~~la--~~~~~~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ 79 (144)
T PRK15005 4 TILVPIDISDSELTQRVISHVEAEA--KIDDAEVHFLTVIPSLPYYASLGLAYS--AELPAMDDLKAEAKSQLEEIIKKF 79 (144)
T ss_pred cEEEecCCCchhHHHHHHHHHHHHH--hccCCeEEEEEEEccCccccccccccc--ccchHHHHHHHHHHHHHHHHHHHh
Confidence 69999999998 578999998888 456789999999985322111000000 000000112233444555555443
Q ss_pred C-cceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130 574 W-GTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL 646 (815)
Q Consensus 574 ~-~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl 646 (815)
. .+++++..+..+ +..+.|++.|+++++||||||.|+ .++.+.+.||.++ +|++++||||.++
T Consensus 80 ~~~~~~~~~~v~~G---~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~~llGS~a~------~vl~~a~cpVlvV 143 (144)
T PRK15005 80 KLPTDRVHVHVEEG---SPKDRILELAKKIPADMIIIASHR-PDITTYLLGSNAA------AVVRHAECSVLVV 143 (144)
T ss_pred CCCCCceEEEEeCC---CHHHHHHHHHHHcCCCEEEEeCCC-CCchheeecchHH------HHHHhCCCCEEEe
Confidence 2 445677776555 889999999999999999999995 4566656555554 9999999999886
No 24
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.26 E-value=4.8e-11 Score=115.05 Aligned_cols=142 Identities=10% Similarity=0.072 Sum_probs=94.1
Q ss_pred eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhc-C
Q 047130 496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKN-W 574 (815)
Q Consensus 496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~ 574 (815)
+||+|+|.++++..+++.+..++. ..+.+++++|+++.+... +.... .............++..+.++++.+.. .
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~--~~~~~l~ll~v~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 76 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLA--TKGQTIVLVHVHPPITSI-PSSSG-KLEVASAYKQEEDKEAKELLLPYRCFCSR 76 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhcc--CCCCcEEEEEeccCcccC-CCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999984 467899999998754321 10000 000000000011122333344433221 1
Q ss_pred cceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCC--CceEEEec
Q 047130 575 GTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAP--CSVGILID 648 (815)
Q Consensus 575 ~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~Ap--CsVgIlvd 648 (815)
.++.++..+..+ .+..+.|++.|++.++|+||||.|++.++.+.+-++ ++.++|+++|| |||.++.|
T Consensus 77 ~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gs-----sva~~Vi~~a~~~c~Vlvv~~ 145 (146)
T cd01989 77 KGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKS-----DVASSVLKEAPDFCTVYVVSK 145 (146)
T ss_pred cCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCC-----chhHHHHhcCCCCceEEEEeC
Confidence 456676666543 378999999999999999999999998876554321 35569999999 99998753
No 25
>PRK09982 universal stress protein UspD; Provisional
Probab=99.25 E-value=1.6e-11 Score=118.02 Aligned_cols=134 Identities=10% Similarity=-0.005 Sum_probs=90.3
Q ss_pred eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcCc
Q 047130 496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWG 575 (815)
Q Consensus 496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 575 (815)
|||+|+|+++++..+++.+..++ ++.+.+++++|+++......+....... . .......+...+.++++.+.. +
T Consensus 5 ~ILvavD~S~~s~~al~~A~~lA--~~~~a~l~llhV~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~l~~~~~~~-~ 78 (142)
T PRK09982 5 HIGVAISGNEEDALLVNKALELA--RHNDAHLTLIHIDDGLSELYPGIYFPAT--E-DILQLLKNKSDNKLYKLTKNI-Q 78 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHH--HHhCCeEEEEEEccCcchhchhhhccch--H-HHHHHHHHHHHHHHHHHHHhc-C
Confidence 79999999999999999999999 5578999999998743211000000000 0 000111222333455544432 2
Q ss_pred ceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEe
Q 047130 576 TACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILI 647 (815)
Q Consensus 576 ~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlv 647 (815)
...++..+..+ +..+.|++.|+++++||||||.| +.+..+. + ++.++|+++|+|||.|+.
T Consensus 79 ~~~~~~~v~~G---~p~~~I~~~A~~~~aDLIVmG~~-~~~~~~~-------~-~va~~V~~~s~~pVLvv~ 138 (142)
T PRK09982 79 WPKTKLRIERG---EMPETLLEIMQKEQCDLLVCGHH-HSFINRL-------M-PAYRGMINKMSADLLIVP 138 (142)
T ss_pred CCcceEEEEec---CHHHHHHHHHHHcCCCEEEEeCC-hhHHHHH-------H-HHHHHHHhcCCCCEEEec
Confidence 23466666666 89999999999999999999977 5554433 2 266799999999999973
No 26
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.18 E-value=1.2e-10 Score=112.15 Aligned_cols=133 Identities=10% Similarity=0.028 Sum_probs=87.1
Q ss_pred eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcCc
Q 047130 496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWG 575 (815)
Q Consensus 496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 575 (815)
|||+|+|++++...+++.+..++ +..+..++++|+.+-.....+... ... .........++..+.++++.+. .
T Consensus 5 ~ILvavD~S~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~l~~~~~~--~ 77 (144)
T PRK15118 5 HILIAVDLSPESKVLVEKAVSMA--RPYNAKVSLIHVDVNYSDLYTGLI--DVN-LGDMQKRISEETHHALTELSTN--A 77 (144)
T ss_pred EEEEEccCChhHHHHHHHHHHHH--HhhCCEEEEEEEccChhhhhhhhh--hcc-hHHHHHHHHHHHHHHHHHHHHh--C
Confidence 79999999999999999999998 446789999998431111000000 000 0000111123333455555543 2
Q ss_pred ceEEE-EEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEe
Q 047130 576 TACVY-PFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILI 647 (815)
Q Consensus 576 ~v~v~-~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlv 647 (815)
++.+. ..+..+ +.++.|++.|+++++||||||.|++ ... .++++..+|+++|||||.|+.
T Consensus 78 ~~~~~~~~~~~G---~p~~~I~~~a~~~~~DLIV~Gs~~~-~~~--------~lgSva~~v~~~a~~pVLvv~ 138 (144)
T PRK15118 78 GYPITETLSGSG---DLGQVLVDAIKKYDMDLVVCGHHQD-FWS--------KLMSSARQLINTVHVDMLIVP 138 (144)
T ss_pred CCCceEEEEEec---CHHHHHHHHHHHhCCCEEEEeCccc-HHH--------HHHHHHHHHHhhCCCCEEEec
Confidence 34432 333344 8899999999999999999999963 211 156778899999999999985
No 27
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.11 E-value=2.1e-10 Score=108.09 Aligned_cols=134 Identities=15% Similarity=0.130 Sum_probs=90.7
Q ss_pred ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHH---HHHH
Q 047130 495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFK---LFEE 571 (815)
Q Consensus 495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~---~~~~ 571 (815)
-|||+|+|++++...+++.+..++ +.++..++++|+++.............. . ....+....... ....
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la--~~~~~~i~~l~v~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~ 74 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELA--KRSGAEITLLHVIPPPPQYSFSAAEDEE----S--EEEAEEEEQARQAEAEEAE 74 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHH--HHHTCEEEEEEEEESCHCHHHHHHHHHH----H--HHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHH--HhhCCeEEEEEeeccccccccccccccc----c--ccccchhhhhhhHHHHHHh
Confidence 389999999999999999999998 4478999999999965432111100000 0 000000000000 1111
Q ss_pred hcCcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130 572 KNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL 646 (815)
Q Consensus 572 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl 646 (815)
. .........+..+ +..++|++.++++++|+||||.|++.+..+.+ ++++.+++++++||||.|+
T Consensus 75 ~-~~~~~~~~~~~~~---~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~------~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 75 A-EGGIVIEVVIESG---DVADAIIEFAEEHNADLIVMGSRGRSGLERLL------FGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp H-HTTSEEEEEEEES---SHHHHHHHHHHHTTCSEEEEESSSTTSTTTSS------SHHHHHHHHHHTSSEEEEE
T ss_pred h-hccceeEEEEEee---ccchhhhhccccccceeEEEeccCCCCccCCC------cCCHHHHHHHcCCCCEEEe
Confidence 1 1234444444444 89999999999999999999999977666554 6777789999999999987
No 28
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.08 E-value=6.2e-10 Score=104.10 Aligned_cols=122 Identities=19% Similarity=0.111 Sum_probs=88.4
Q ss_pred eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcCc
Q 047130 496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWG 575 (815)
Q Consensus 496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 575 (815)
|||+|+++++....+++.+..++ ++.+..++++|+++-... + . ....++.++.+.+..++ .
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la--~~~~~~l~ll~v~~~~~~--~----~---------~~~~~~~l~~~~~~~~~--~ 61 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLA--DRLKAPWYVVYVETPRLN--R----L---------SEAERRRLAEALRLAEE--L 61 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHH--HHhCCCEEEEEEecCccc--c----C---------CHHHHHHHHHHHHHHHH--c
Confidence 69999999999999999999999 447889999999863211 0 0 01123334444444333 2
Q ss_pred ceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcC-CCceEEE
Q 047130 576 TACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERA-PCSVGIL 646 (815)
Q Consensus 576 ~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~A-pCsVgIl 646 (815)
++. ..+..+ .+..+.|++.|+++++|+||||+|+++.+...+ ++++.++|+++| ||||.|.
T Consensus 62 ~~~--~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~------~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 62 GAE--VVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWRELF------RGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred CCE--EEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHh------cccHHHHHHHhCCCCeEEEe
Confidence 233 233333 478999999999999999999999997776555 555566999999 9999885
No 29
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.07 E-value=1.9e-08 Score=110.80 Aligned_cols=298 Identities=13% Similarity=0.114 Sum_probs=176.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcccChhHHHh---cchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHH
Q 047130 132 GTLDLVATFGYILFQFLTGVKMDVSMIQK---TGKKS---LFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVT 205 (815)
Q Consensus 132 ~~l~~la~lgli~~lF~~Gle~d~~~l~~---~~k~~---~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig 205 (815)
...+.+.+.-+.+|.|.+|+|+.-+.+.. +.||+ ..-++.|+++|.++-. .+.. +.+. .--+|
T Consensus 67 sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~----~~n~--~~~~-----~~GWg 135 (438)
T PRK14856 67 SLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYF----FLNA--DTPS-----QHGFG 135 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHh----heec--CCCc-----cCccc
Confidence 34455667777889999999998777642 23333 3456777788876422 2211 1000 11122
Q ss_pred HHHhhccHHHHHHHHHHhh-hccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 047130 206 VVHSLSRFPSIACLVSDLR-IINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVV 284 (815)
Q Consensus 206 ~~ls~Ts~~vv~~iL~el~-ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~ 284 (815)
+- ..|+.+-..-++.=+| ..++.+....++-|++||+.++++++++.. ++. ...+..+...++.+
T Consensus 136 IP-mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~i---~~~~L~~a~~~~~~------ 201 (438)
T PRK14856 136 IP-MATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT----TNL---KFAWLLGALGVVLV------ 201 (438)
T ss_pred cc-cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----CCC---cHHHHHHHHHHHHH------
Confidence 21 1233333333332222 246677788999999999999988776552 222 12333333222221
Q ss_pred HHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCc--------------------
Q 047130 285 RPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPL-------------------- 344 (815)
Q Consensus 285 r~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~-------------------- 344 (815)
.++.+|.. ++....++++.. +.-+....-|+|+.++..++|+++|..++.
T Consensus 202 ----l~~ln~~~----v~~~~~Y~~~G~--~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (438)
T PRK14856 202 ----LAVLNRLN----VRSLIPYLLLGV--LLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSG 271 (438)
T ss_pred ----HHHHHHcC----CccccHHHHHHH--HHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccc
Confidence 12334432 223334444332 334445578999999999999999975322
Q ss_pred ------------------------hhHHHHhhhhhHHHhhHHHH-HHhhcccCChhhhcccchhHHHHHHHHHHHHHHHH
Q 047130 345 ------------------------GSALVEKLDPMVSGLFIPLV-VTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAK 399 (815)
Q Consensus 345 ------------------------~~~l~~kl~~~~~~l~lPlF-F~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K 399 (815)
-+++++.+++.+..+.+|+| |+..|..++........+ ....+++..++||
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~~p----v~lGI~~GLvvGK 347 (438)
T PRK14856 272 ALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEVDK----VLLGVILGLCLGK 347 (438)
T ss_pred cccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhccCc----HHHHHHHHHHhcc
Confidence 13466677788888999999 889999987543221112 3455666667889
Q ss_pred HHHHHHhhhhc----------CCChHHHHHHHHHHhhhhhHHHHHHhhcccc--cccchhHHHHHHHHHHHHHHHHHHHH
Q 047130 400 VATTMIPPLYC----------KVPKRDAFALALIMSTKGIVEISTYNISRNI--ESLTDQMFSFLTVEILVTAIIIPILV 467 (815)
Q Consensus 400 ~i~~~l~~~~~----------~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~--~~i~~~~~~~lv~~~ll~t~i~~~lv 467 (815)
.+|.+..++.. +++|++-...|++-+.-=++++-+.+.+++. ....++.=..+.+.++++.+++..++
T Consensus 348 ~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigIL~gS~lsai~G~~~L 427 (438)
T PRK14856 348 PLGIFLITFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFTSEHKDAMEVAKIAILLGSLISGIIGALYL 427 (438)
T ss_pred hHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888777643 4788998888886555567888888888843 22223333333344445455555444
Q ss_pred H
Q 047130 468 K 468 (815)
Q Consensus 468 ~ 468 (815)
+
T Consensus 428 ~ 428 (438)
T PRK14856 428 F 428 (438)
T ss_pred H
Confidence 4
No 30
>PRK10116 universal stress protein UspC; Provisional
Probab=99.05 E-value=9.9e-10 Score=105.33 Aligned_cols=136 Identities=10% Similarity=0.032 Sum_probs=90.9
Q ss_pred ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcC
Q 047130 495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNW 574 (815)
Q Consensus 495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 574 (815)
-|||+++|++++...+++.+..++ ++.+..++++|+++.+.... .+ .... .........++..+.++++.+.
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA--~~~~a~l~ll~v~~~~~~~~-~~-~~~~--~~~~~~~~~~~~~~~l~~~~~~-- 75 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIA--RPVNGKISLITLASDPEMYN-QF-AAPM--LEDLRSVMQEETQSFLDKLIQD-- 75 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHH--HHhCCEEEEEEEccCcccch-hh-hHHH--HHHHHHHHHHHHHHHHHHHHHh--
Confidence 479999999999999999999998 44678999999987532110 01 0000 0000011122333445555443
Q ss_pred cceEEE-EEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEecc
Q 047130 575 GTACVY-PFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDR 649 (815)
Q Consensus 575 ~~v~v~-~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdr 649 (815)
.+++.. ..+ ...+..+.|++.|+++++||||||.|++.+.+.. .++..+|++++||||.|+...
T Consensus 76 ~~~~~~~~~~---~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~--------~s~a~~v~~~~~~pVLvv~~~ 140 (142)
T PRK10116 76 ADYPIEKTFI---AYGELSEHILEVCRKHHFDLVICGNHNHSFFSRA--------SCSAKRVIASSEVDVLLVPLT 140 (142)
T ss_pred cCCCeEEEEE---ecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHH--------HHHHHHHHhcCCCCEEEEeCC
Confidence 233332 333 3458899999999999999999999998665442 245569999999999998543
No 31
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.01 E-value=8.3e-08 Score=104.30 Aligned_cols=271 Identities=12% Similarity=0.095 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHHHHHhhcccChhHHHh---cchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHH
Q 047130 133 TLDLVATFGYILFQFLTGVKMDVSMIQK---TGKKS---LFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTV 206 (815)
Q Consensus 133 ~l~~la~lgli~~lF~~Gle~d~~~l~~---~~k~~---~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~ 206 (815)
..+.+.+.=+.+|.|.+|+|+.-+.+.. +.||+ ..-++.|+++|.++-.. +.. +.+. ..--+|+
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~----~n~--g~~~----~~~GWgI 128 (389)
T PRK09560 59 LLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAA----FNY--NNPE----TLRGWAI 128 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhe----eec--CCCc----ccCcccc
Confidence 3455566667889999999998777642 23333 45567778888764222 211 1000 0011111
Q ss_pred HHhhccHHHHHHHHHHh-hhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 047130 207 VHSLSRFPSIACLVSDL-RIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVR 285 (815)
Q Consensus 207 ~ls~Ts~~vv~~iL~el-~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r 285 (815)
- ..|+.+-..-+++=+ +..+..+....++-|++||+.+++++++... ++-+ ..+......++.+
T Consensus 129 P-mATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt----~~i~---~~~L~~a~~~~~~------- 193 (389)
T PRK09560 129 P-AATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT----SDLS---LPALALAAIAIAV------- 193 (389)
T ss_pred c-cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC----CCCC---HHHHHHHHHHHHH-------
Confidence 1 123333333333222 2256677889999999999999887776552 2222 2233322222211
Q ss_pred HHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCc------hhHHHHhhhhhHHHh
Q 047130 286 PAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPL------GSALVEKLDPMVSGL 359 (815)
Q Consensus 286 ~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~------~~~l~~kl~~~~~~l 359 (815)
.++.+|.. ++....+..+.. +.-+....-|+|+.++..++|+++|..++. -+++++++++.+..+
T Consensus 194 ---l~~ln~~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~ 264 (389)
T PRK09560 194 ---LFLLNRLG----VTKLTPYLIVGA--ILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFA 264 (389)
T ss_pred ---HHHHHHcC----CccchHHHHHHH--HHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhh
Confidence 12334432 233344444443 334444578999999999999999975322 256889999999888
Q ss_pred hHHHH-HHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhc----------CCChHHHHHHHHHHhhhh
Q 047130 360 FIPLV-VTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYC----------KVPKRDAFALALIMSTKG 428 (815)
Q Consensus 360 ~lPlF-F~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~m~~kG 428 (815)
.+|+| |+..|..++-..+.....- ....+++..++||.+|.+..++.. +++|++-..+|++-+.-=
T Consensus 265 IlPlFAlaNAGV~l~~~~~~~~~~p---v~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGF 341 (389)
T PRK09560 265 ILPLFAFANAGVSLAGISLSSLTSP---VPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGF 341 (389)
T ss_pred hHHHHHhhcCCeeecCCcHHhccCc---HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999 8888988843223221111 245566666788998888776643 478899888888655566
Q ss_pred hHHHHHHhhccc
Q 047130 429 IVEISTYNISRN 440 (815)
Q Consensus 429 ~v~li~~~~~~~ 440 (815)
++++-+.+.++.
T Consensus 342 TmSLFIa~LAF~ 353 (389)
T PRK09560 342 TMSLFIGSLAFG 353 (389)
T ss_pred HHHHHHHHhhcC
Confidence 778888888883
No 32
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.95 E-value=1.3e-07 Score=103.94 Aligned_cols=267 Identities=13% Similarity=0.067 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccChhHHHh---cchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHH
Q 047130 133 TLDLVATFGYILFQFLTGVKMDVSMIQK---TGKKS---LFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTV 206 (815)
Q Consensus 133 ~l~~la~lgli~~lF~~Gle~d~~~l~~---~~k~~---~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~ 206 (815)
..+.+.+--+.+|.|.+|+|+.-+.+.. +.|++ ..-++.|+++|.++-. .+.. +.+ ..--+|+
T Consensus 63 l~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~----~~n~--~~~-----~~~GWgI 131 (423)
T PRK14855 63 LEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYT----ALNA--GGP-----GASGWGV 131 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHh----eeec--CCC-----ccCcccc
Confidence 3445556667889999999998877642 33333 3456777778776422 2211 100 0111222
Q ss_pred HHhhccHHHHHHHHHHhh-hccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 047130 207 VHSLSRFPSIACLVSDLR-IINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVR 285 (815)
Q Consensus 207 ~ls~Ts~~vv~~iL~el~-ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r 285 (815)
- ..|+.+-..-+|+=+| ..+..+....++-|++||+.++++++++.. ++.+ ..+..+...++.
T Consensus 132 P-mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~i~---~~~L~~a~~~~~-------- 195 (423)
T PRK14855 132 P-MATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT----SGLN---LLALLLAALTWA-------- 195 (423)
T ss_pred c-cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC----CCCC---HHHHHHHHHHHH--------
Confidence 1 2233333333333222 245667788999999999999887776552 2222 223222222111
Q ss_pred HHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCC-Cc--------------------
Q 047130 286 PAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGP-PL-------------------- 344 (815)
Q Consensus 286 ~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~-~~-------------------- 344 (815)
..++.+|.. ++....++.+.. +.-+....-|+|+.++..++|+++|..+ +.
T Consensus 196 --~l~~ln~~~----v~~~~~Y~~~G~--~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (423)
T PRK14855 196 --LALLAGRLG----VTSLKIYAVLGA--LLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVG 267 (423)
T ss_pred --HHHHHHHcC----CccccHHHHHHH--HHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhh
Confidence 112334432 233344444333 3344455789999999999999999751 11
Q ss_pred ----------------hhHHHHhhhhhHHHhhHHHH-HHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 047130 345 ----------------GSALVEKLDPMVSGLFIPLV-VTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPP 407 (815)
Q Consensus 345 ----------------~~~l~~kl~~~~~~l~lPlF-F~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~ 407 (815)
.+++++++++.+..+.+|+| |+..|..++-.. ... ....+++..++||.+|.+..+
T Consensus 268 ~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~p------v~lGI~~GLvvGK~lGI~~~s 340 (423)
T PRK14855 268 ARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LGT------VSLGVFLGLLLGKPLGVVGGA 340 (423)
T ss_pred HHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CCc------HHHHHHHHHHhcchHHHHHHH
Confidence 24577788888888999999 888898885322 222 244556666788998888777
Q ss_pred hhc----------CCChHHHHHHHHHHhhhhhHHHHHHhhcccc
Q 047130 408 LYC----------KVPKRDAFALALIMSTKGIVEISTYNISRNI 441 (815)
Q Consensus 408 ~~~----------~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~ 441 (815)
+.. +++|++-...|++-+.-=++++-+++.+++.
T Consensus 341 ~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~ 384 (423)
T PRK14855 341 WLAVRLGLASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFAD 384 (423)
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 643 4788998888886556667888888888853
No 33
>PRK11175 universal stress protein UspE; Provisional
Probab=98.92 E-value=4.2e-09 Score=114.62 Aligned_cols=142 Identities=13% Similarity=0.070 Sum_probs=92.4
Q ss_pred ceeEEeeecCCCh-------HHHHHHHHHhCCCCCC-CceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHH
Q 047130 495 LRILACIYRPDNI-------PAIIKFLQASCPKRGS-LVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSF 566 (815)
Q Consensus 495 lrILv~i~~~~~~-------~~~i~la~~~~~~~~~-~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af 566 (815)
-|||+|+|+++.. ..+++.+..++ +.. ...++++|+.+............. ..........++..+.+
T Consensus 153 ~~Ilva~D~s~~~~~~~~~~~~al~~a~~la--~~~~~a~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l 228 (305)
T PRK11175 153 GKILVAVNVASEEPYHDALNEKLVEEAIDLA--EQLNHAEVHLVNAYPVTPINIAIELPEF--DPSVYNDAIRGQHLLAM 228 (305)
T ss_pred CeEEEEeCCCCCccchhHHHHHHHHHHHHHH--hhCcCCceEEEEEecCcchhcccccccc--chhhHHHHHHHHHHHHH
Confidence 4899999998764 46888888887 335 678999999875432100000000 00000011112333455
Q ss_pred HHHHHhcCcceEE-EEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEE
Q 047130 567 KLFEEKNWGTACV-YPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGI 645 (815)
Q Consensus 567 ~~~~~~~~~~v~v-~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgI 645 (815)
+++.+.. ++.. +..+.. .+..+.|++.|+++++||||||.|++.++.+.+.|+.+ ++|++++||||.+
T Consensus 229 ~~~~~~~--~~~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a------~~v~~~~~~pVLv 297 (305)
T PRK11175 229 KALRQKF--GIDEEQTHVEE---GLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTA------EHVIDHLNCDLLA 297 (305)
T ss_pred HHHHHHh--CCChhheeecc---CCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecchH------HHHHhcCCCCEEE
Confidence 5555442 2322 233333 37889999999999999999999999888877755554 5999999999999
Q ss_pred EeccCC
Q 047130 646 LIDRGR 651 (815)
Q Consensus 646 lvdrg~ 651 (815)
++.++.
T Consensus 298 v~~~~~ 303 (305)
T PRK11175 298 IKPDGY 303 (305)
T ss_pred EcCCCC
Confidence 976654
No 34
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.90 E-value=1.1e-08 Score=95.28 Aligned_cols=129 Identities=16% Similarity=0.129 Sum_probs=90.6
Q ss_pred eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhc-C
Q 047130 496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKN-W 574 (815)
Q Consensus 496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~ 574 (815)
|||+|++++++...+++.+..++ +..+..++++|+.+-.+.... ... ....++..+.++++.... .
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a--~~~~~~i~~l~v~~~~~~~~~---~~~--------~~~~~~~~~~l~~~~~~~~~ 67 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLA--RRLGAELVLLHVVDPPPSSAA---ELA--------ELLEEEARALLEALREALAE 67 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHH--HhcCCEEEEEEEecCCCCcch---hHH--------HHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999 446899999999875433211 000 001122233444444321 1
Q ss_pred cceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130 575 GTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL 646 (815)
Q Consensus 575 ~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl 646 (815)
.+++++.....+ +..++|++.+++.++|++|+|.+++....+.+.++. .+++++++||||.++
T Consensus 68 ~~~~~~~~~~~~---~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~------~~~ll~~~~~pvliv 130 (130)
T cd00293 68 AGVKVETVVLEG---DPAEAILEAAEELGADLIVMGSRGRSGLRRLLLGSV------AERVLRHAPCPVLVV 130 (130)
T ss_pred CCCceEEEEecC---CCHHHHHHHHHHcCCCEEEEcCCCCCccceeeeccH------HHHHHhCCCCCEEeC
Confidence 456776666555 448999999999999999999998866544454444 459999999999763
No 35
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.89 E-value=4.5e-07 Score=98.14 Aligned_cols=272 Identities=10% Similarity=0.072 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccChhHHH---hcchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHH
Q 047130 133 TLDLVATFGYILFQFLTGVKMDVSMIQ---KTGKKS---LFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTV 206 (815)
Q Consensus 133 ~l~~la~lgli~~lF~~Gle~d~~~l~---~~~k~~---~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~ 206 (815)
..+.+.+.=+.+|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++-..+. .. +.....| |+
T Consensus 56 l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~~n----~~-~~~~~GW------~I 124 (383)
T PRK14854 56 LMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSIN----HD-IKVINGW------AI 124 (383)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHhhc----cC-CcccCcc------cc
Confidence 344555666788999999999877654 233333 4556777888876433221 11 1000112 11
Q ss_pred HHh-hccHHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 047130 207 VHS-LSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVR 285 (815)
Q Consensus 207 ~ls-~Ts~~vv~~iL~el~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r 285 (815)
-.+ -++|++-.-.+-..+ .+..+.-..++-|++||+.++++++++.. ++-+ ..+.......+. +.
T Consensus 125 P~ATDIAFAlgvLallG~r-vP~~lrvFLlaLAIvDDlgAI~VIAlFYt----~~i~---~~~L~~A~~~~~--~l---- 190 (383)
T PRK14854 125 PSATDIAFTLGILALLGTR-VPAKLKLLVITIAIFDDIAAIAIIAIFYT----KSLS---LLSLSLGTLFIL--AM---- 190 (383)
T ss_pred ccHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhhhHhheeeecC----CCcc---HHHHHHHHHHHH--HH----
Confidence 111 122333322222222 56677778888999999999887776552 2221 122222111111 11
Q ss_pred HHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCc----hhHHHHhhhhhHHHhhH
Q 047130 286 PAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPL----GSALVEKLDPMVSGLFI 361 (815)
Q Consensus 286 ~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~----~~~l~~kl~~~~~~l~l 361 (815)
++.+|... ++....++++. ++.-+....-|+|+.++..+.|+++|...+. -+++++++++.+..+.+
T Consensus 191 ----~~~nr~~~---v~~~~~Y~~~G--~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~Il 261 (383)
T PRK14854 191 ----IICNRIFK---INRSSVYVVLG--FFAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFIL 261 (383)
T ss_pred ----HHHHHhcC---CceehHHHHHH--HHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhH
Confidence 11222111 22333444433 2334445578999999999999999974221 25788889999999999
Q ss_pred HHH-HHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhc----------CCChHHHHHHHHHHhhhhhH
Q 047130 362 PLV-VTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYC----------KVPKRDAFALALIMSTKGIV 430 (815)
Q Consensus 362 PlF-F~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~m~~kG~v 430 (815)
|+| |+..|..++-..+.....- ....+++..++||.+|.+..++.. +++|++-..+|++-+.-=++
T Consensus 262 PlFA~aNAGV~l~~~~~~~~~~p---v~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTm 338 (383)
T PRK14854 262 PVFAFANAGISFSGISFSILFEP---ITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTM 338 (383)
T ss_pred HHHHhhcCCeeeccCcHHhhcCc---HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999 8888988842222211111 244566666788998888776643 47789988888865566678
Q ss_pred HHHHHhhcccc
Q 047130 431 EISTYNISRNI 441 (815)
Q Consensus 431 ~li~~~~~~~~ 441 (815)
++-+++.+++.
T Consensus 339 SLFIa~LAF~~ 349 (383)
T PRK14854 339 SLFIGVLAFND 349 (383)
T ss_pred HHHHHHhhCCC
Confidence 88888888853
No 36
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.88 E-value=5.1e-07 Score=98.00 Aligned_cols=271 Identities=12% Similarity=0.094 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccChhHHHh---cchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHH
Q 047130 133 TLDLVATFGYILFQFLTGVKMDVSMIQK---TGKKS---LFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTV 206 (815)
Q Consensus 133 ~l~~la~lgli~~lF~~Gle~d~~~l~~---~~k~~---~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~ 206 (815)
..+.+.+.=+.+|.|.+|+|+.-+.+.. +.||+ ..-++.|+++|.++-.. +.. +.+. ..--+|+
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~~----~n~--~~~~----~~~GWaI 128 (388)
T PRK09561 59 LLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYLL----FNY--ADPV----TREGWAI 128 (388)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHhh----eec--CCCc----ccCcccc
Confidence 3445556667889999999998887642 33333 34567777888764222 211 1000 0011111
Q ss_pred HHhhccHHHHHHHHHHh-hhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 047130 207 VHSLSRFPSIACLVSDL-RIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVR 285 (815)
Q Consensus 207 ~ls~Ts~~vv~~iL~el-~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r 285 (815)
- ..|+.+-..-++.=+ +..+..+....++-|++||+.++++++++.. ++-+ ..+..+...++.+
T Consensus 129 P-~ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~i~---~~~L~~a~~~~~~------- 193 (388)
T PRK09561 129 P-AATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT----SDLS---MVSLGVAAVAIAV------- 193 (388)
T ss_pred c-cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----CCcc---HHHHHHHHHHHHH-------
Confidence 1 123333222333222 2256677889999999999999988776552 2221 2222222221111
Q ss_pred HHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCc----hhHHHHhhhhhHHHhhH
Q 047130 286 PAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPL----GSALVEKLDPMVSGLFI 361 (815)
Q Consensus 286 ~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~----~~~l~~kl~~~~~~l~l 361 (815)
.++.+|.. ++....+.++.. +.-+....-|+|+.++..++|+++|...+. -+++++++++.+..+.+
T Consensus 194 ---l~~ln~~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~Il 264 (388)
T PRK09561 194 ---LAVLNLCG----VRRTSVYILVGV--VLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLIL 264 (388)
T ss_pred ---HHHHHHcC----CccchHHHHHHH--HHHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeH
Confidence 12334432 233344444433 334445578999999999999999975322 35788999999999999
Q ss_pred HHH-HHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhc----------CCChHHHHHHHHHHhhhhhH
Q 047130 362 PLV-VTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYC----------KVPKRDAFALALIMSTKGIV 430 (815)
Q Consensus 362 PlF-F~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~m~~kG~v 430 (815)
|+| |+..|..++-..+.....- ....+++..++||.+|.+..++.. +++|++-..+|++-+.-=++
T Consensus 265 PlFAfaNAGV~l~~~~~~~~~~p---v~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTm 341 (388)
T PRK09561 265 PLFAFANAGVSLQGVTLDGLTSP---LPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTM 341 (388)
T ss_pred HHHHhhcCCeeeccCcHHhhcCc---HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999 8888888832112211011 244556666788998888776643 47889988888865555677
Q ss_pred HHHHHhhccc
Q 047130 431 EISTYNISRN 440 (815)
Q Consensus 431 ~li~~~~~~~ 440 (815)
++-+.+.+++
T Consensus 342 SLFIa~LAF~ 351 (388)
T PRK09561 342 SIFIASLAFG 351 (388)
T ss_pred HHHHHHHhcC
Confidence 8888888885
No 37
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=98.73 E-value=4.7e-09 Score=117.17 Aligned_cols=371 Identities=15% Similarity=0.132 Sum_probs=224.4
Q ss_pred HHHHHHHHHhhhC--CChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhc
Q 047130 84 VTHACHFVLKRFG--IPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKT 161 (815)
Q Consensus 84 ~~~~~~~llkrl~--~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~ 161 (815)
++.+...+..+++ .|.-.-.|+.|+++|-.+.+.-..- .+..++ +.+=-.-+--++|-+|+-|.-+.+..+
T Consensus 53 LaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~---~~~L~s----~vFFlyLLPPIvlDAGYfMp~r~Ff~N 125 (670)
T KOG1966|consen 53 LAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIA---PFFLES----DVFFLYLLPPIVLDAGYFMPNRAFFEN 125 (670)
T ss_pred HHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhccc---cccccc----cchhhhhcCHHHhcccccCccHHHHhc
Confidence 3344444444554 7888888999999886544331100 000011 011111122367889999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHH--HHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChhHHHHHHHHH
Q 047130 162 GKKSLFTGLLTLLIPFLLGAA--ALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCAL 239 (815)
Q Consensus 162 ~k~~~~i~~~~~~ip~~~~~~--~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~lals~a~ 239 (815)
..+.+..+..|.+.-.....+ .+......++.+ .+....++.|...|..++..+..+..|.. .|.-+=-++-++++
T Consensus 126 lgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~-~glld~LlFgSLIsAVDPVAVLaVFEEih-VNe~LfI~VFGESL 203 (670)
T KOG1966|consen 126 LGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMS-IGLLDILLFGSLISAVDPVAVLAVFEEIH-VNEVLFIIVFGESL 203 (670)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-chHHHHHHHHHHHHhcCchhhhhhhhhhc-cccEEEeeeehhhh
Confidence 999999999998875543222 222222223322 34677888999999999999999999998 46667778889999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHH
Q 047130 240 VSEMIGLILTRSAIWIASIYHAPLH-----SAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLAL 314 (815)
Q Consensus 240 v~D~~~~~ll~v~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~~l~~~l 314 (815)
+||.+.++++-+......-++.+.. .....++...+.++.++.+...+.....|.+.+ ++-....+++.+..
T Consensus 204 lNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~---vrviePvfif~~pY 280 (670)
T KOG1966|consen 204 LNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH---VRVLEPVFIFLLPY 280 (670)
T ss_pred hcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc---eeeecchhhhhHHH
Confidence 9999999999766655433222110 001111111111222333333333333444332 33345678899999
Q ss_pred HHHHHHHHhCchhhHHHHHHHhhcCCCC-----CchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHH
Q 047130 315 GAGYISDLFGQHVYFGPFVFGLAVPAGP-----PLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTA 389 (815)
Q Consensus 315 ~~~~i~e~~G~~~~lGafvaGl~~~~~~-----~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~ 389 (815)
.++..+|.+++|++++-.+.|+++...- +....-++.+-...+..--++.|++.|.++--. ...+.|. .+.
T Consensus 281 laYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~--~h~wd~~--Fi~ 356 (670)
T KOG1966|consen 281 LAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS--NHHWDFA--FIC 356 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC--cceeehh--hhh
Confidence 9999999999999999999999998641 111122233333445666778888889876433 2333442 344
Q ss_pred HHHHHHHHHHHHHHHHhhhhc------CCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhH-----HHHHHHHHHH
Q 047130 390 VIVAVVVLAKVATTMIPPLYC------KVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQM-----FSFLTVEILV 458 (815)
Q Consensus 390 ~i~~~~~~~K~i~~~l~~~~~------~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~-----~~~lv~~~ll 458 (815)
+-++...+.|.+++...+++. +++..|.+.++.+ +-||.+...+....-...+-.... +.++.+.+.+
T Consensus 357 ~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV~lid~~~vp~K~~Fvttti~VIfFTVfl 435 (670)
T KOG1966|consen 357 LTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLVVLIDGAKVPAKNMFVTTTIAVIFFTVFL 435 (670)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEEEEeccccCCcccceEeeeeEEEeeeeee
Confidence 444555677999988887765 4678888888775 778888876654433233222222 2222233333
Q ss_pred HHHHHHHHHHhhh
Q 047130 459 TAIIIPILVKFLY 471 (815)
Q Consensus 459 ~t~i~~~lv~~ly 471 (815)
..+..-|+++++-
T Consensus 436 QGiTIkplvk~L~ 448 (670)
T KOG1966|consen 436 QGITIKPLVKFLK 448 (670)
T ss_pred cccchHHHHHHHc
Confidence 3334467777754
No 38
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.61 E-value=1.8e-07 Score=101.55 Aligned_cols=276 Identities=17% Similarity=0.174 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccChhHHH---hcchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHH
Q 047130 133 TLDLVATFGYILFQFLTGVKMDVSMIQ---KTGKKS---LFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTV 206 (815)
Q Consensus 133 ~l~~la~lgli~~lF~~Gle~d~~~l~---~~~k~~---~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~ 206 (815)
..+.+.+--+.+|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++-. .+.. +.+ ...--+|+
T Consensus 55 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalIyl----~~n~--~~~----~~~~GW~I 124 (378)
T PF06965_consen 55 LHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALIYL----AFNA--GGP----EAAHGWAI 124 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG----GG----SST----THHHHTSS
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHHHh----eeec--CCC----CcCceEEe
Confidence 445566667788999999999887764 233433 3456667777765421 1111 100 01111111
Q ss_pred HHhhccHHHHHHHHHHhh-hccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 047130 207 VHSLSRFPSIACLVSDLR-IINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVR 285 (815)
Q Consensus 207 ~ls~Ts~~vv~~iL~el~-ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r 285 (815)
=..|+.+-..-++.=+| ..+..+....++-|++||+.++++++++.. ++. ...+......++. +
T Consensus 125 -P~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt----~~i---~~~~L~~a~~~~~-~------ 189 (378)
T PF06965_consen 125 -PMATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT----DGI---SLLWLLLAAAALL-L------ 189 (378)
T ss_dssp -SS---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS------------HHHHHHHHHHHH-H------
T ss_pred -cccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC----CCC---CHHHHHHHHHHHH-H------
Confidence 12344444444443332 245667789999999999999988776653 221 1222222221111 1
Q ss_pred HHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCch--------hHHHHhhhhhHH
Q 047130 286 PAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLG--------SALVEKLDPMVS 357 (815)
Q Consensus 286 ~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~--------~~l~~kl~~~~~ 357 (815)
.+..+|.. ++....+..+.. +.-+....-|+|+.++..+.|+++|..++.+ +++++++++.+.
T Consensus 190 ---l~~l~r~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~ 260 (378)
T PF06965_consen 190 ---LFVLNRLG----VRSLWPYLLLGI--LLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVA 260 (378)
T ss_dssp ---HHHHHHTT-------THHHHHHHH--HHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHH
T ss_pred ---HHHHHHCC----CceehHHHHHHH--HHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhh
Confidence 13334432 222334433332 3344455789999999999999999875442 378888999999
Q ss_pred HhhHHHH-HHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhc----------CCChHHHHHHHHHHhh
Q 047130 358 GLFIPLV-VTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYC----------KVPKRDAFALALIMST 426 (815)
Q Consensus 358 ~l~lPlF-F~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~m~~ 426 (815)
.+.+|+| |+..|..++-..+.....- ....+++-.++||.+|.+..++.. +++|++-..+|++-+.
T Consensus 261 ~~IlPlFAlaNAGV~l~~~~~~~~~~p---v~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGI 337 (378)
T PF06965_consen 261 FVILPLFALANAGVSLSGSSLGDLTSP---VTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGI 337 (378)
T ss_dssp HTHHHHHHHHHS----SSS---THHHH---SSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT-
T ss_pred hhhHHhHhheeCceEEecCchHhhhCh---HHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH
Confidence 9999999 8899998886544322111 233455556789999988887644 3677777777775445
Q ss_pred hhhHHHHHHhhcccccccc
Q 047130 427 KGIVEISTYNISRNIESLT 445 (815)
Q Consensus 427 kG~v~li~~~~~~~~~~i~ 445 (815)
-=++++-+.+.+++.....
T Consensus 338 GFTmSLFIa~LAF~~~~~~ 356 (378)
T PF06965_consen 338 GFTMSLFIAGLAFDDPALQ 356 (378)
T ss_dssp -HHHHHHHHHHHSTT-SSH
T ss_pred HHHHHHHHHHHHcCChhhh
Confidence 5577888888888874333
No 39
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.55 E-value=3.1e-07 Score=88.37 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=83.4
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccc--------cc---hhhhhHHHHHHHhcccCCCCCCE
Q 047130 667 RVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMIS--------TN---WEKVLDSEVLKEVKPENNFNQRV 735 (815)
Q Consensus 667 ~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~--------~~---~~~~~d~~~l~~~~~~~~~~~~v 735 (815)
+|+++++|.+..+.|+.+|.++++..+.+++++|+.++...... .. ..++..++.++++..... ...+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 79 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCS-RKGV 79 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCC
Confidence 48999999999999999999999999999999999865221110 00 011112244554433221 1223
Q ss_pred EEEEEEecC---cHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccc-cchhhhhcCCCCCc--ccEEEEe
Q 047130 736 KYVVEMVNE---GQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELG-IVGNCLVTEDLPGR--YSVLVVQ 809 (815)
Q Consensus 736 ~y~e~~V~~---g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG-~iGd~las~d~~~~--~SvLvvq 809 (815)
.+....++. .+++++++++.+. ||++||+|++ .|+.++ -+| -+.+.+.-. ++ .+|||||
T Consensus 80 ~~~~~~~~g~~~~~~I~~~a~~~~~--dlIV~Gs~g~------~~l~~~----~~gssva~~Vi~~---a~~~c~Vlvv~ 144 (146)
T cd01989 80 QCEDVVLEDDDVAKAIVEYVADHGI--TKLVMGASSD------NHFSMK----FKKSDVASSVLKE---APDFCTVYVVS 144 (146)
T ss_pred eEEEEEEeCCcHHHHHHHHHHHcCC--CEEEEeccCC------Cceeec----ccCCchhHHHHhc---CCCCceEEEEe
Confidence 333344432 3457777776554 9999999987 566554 355 577887766 55 7999998
Q ss_pred e
Q 047130 810 Q 810 (815)
Q Consensus 810 q 810 (815)
.
T Consensus 145 ~ 145 (146)
T cd01989 145 K 145 (146)
T ss_pred C
Confidence 4
No 40
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.52 E-value=1.7e-05 Score=82.93 Aligned_cols=260 Identities=12% Similarity=0.130 Sum_probs=153.6
Q ss_pred HHHHHHHhhcccChhHHHh---cchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhcc-CcchHHHHHHHHHHHhhccHH
Q 047130 142 YILFQFLTGVKMDVSMIQK---TGKKS---LFTGLLTLLIPFLLGAAALEKMSRILGI-GMEDKMKLWVVTVVHSLSRFP 214 (815)
Q Consensus 142 li~~lF~~Gle~d~~~l~~---~~k~~---~~i~~~~~~ip~~~~~~~~~~l~~~~~~-~~~~~~~~l~ig~~ls~Ts~~ 214 (815)
..+|.+++|+|+..+.+.. +++++ ..-++.++++|..+ +.++... ++ ....|. +-+.|+.+
T Consensus 71 MAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli----y~~~n~~-~p~~~~GWa-------IP~ATDiA 138 (390)
T COG3004 71 MAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI----YLALNAG-DPATLEGWA-------IPMATDIA 138 (390)
T ss_pred HHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH----hheeecC-ChhhhcCcC-------cccHHHHH
Confidence 4567788999999888753 33333 23455566666543 1122110 00 000111 11234444
Q ss_pred HHHHHHHHh-hhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047130 215 SIACLVSDL-RIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVK 293 (815)
Q Consensus 215 vv~~iL~el-~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~ 293 (815)
-...+++=+ +..++.+.-..++-|++||+-++++.++... ..-+ ..+.....++.. .. -..+
T Consensus 139 FAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt----~~Ls---~~al~~a~~~i~--vL--------~~lN 201 (390)
T COG3004 139 FALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT----TDLS---MAALGIAALAIA--VL--------AVLN 201 (390)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc----CCcc---HHHHHHHHHHHH--HH--------HHHH
Confidence 334444333 3357778888999999999999887776553 2211 122222211111 11 1122
Q ss_pred HcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCc----hhHHHHhhhhhHHHhhHHHH-HHhh
Q 047130 294 QTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPL----GSALVEKLDPMVSGLFIPLV-VTSA 368 (815)
Q Consensus 294 r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~----~~~l~~kl~~~~~~l~lPlF-F~~~ 368 (815)
|.. ++....+++...++-.+ -..-|+|+.++..+.|+.+|-.... -+++++.+.+.+..+.+|+| |...
T Consensus 202 ~~~----v~~l~~Y~~~gviLW~~--vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaFaNA 275 (390)
T COG3004 202 RLG----VRRLSPYLLVGVILWIA--VLKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAFANA 275 (390)
T ss_pred HhC----chhhhHHHHHHHHHHHH--HHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHHccC
Confidence 221 12223344444333222 3467999999999999999965332 35777888888889999999 8888
Q ss_pred cccCC---hhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhc----------CCChHHHHHHHHHHhhhhhHHHHHH
Q 047130 369 SMRTN---LSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYC----------KVPKRDAFALALIMSTKGIVEISTY 435 (815)
Q Consensus 369 G~~~d---l~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~m~~kG~v~li~~ 435 (815)
|.+++ .+.+.+. ....+++-.++||.+|.+..++.. +.+|++-...+++-+..=++++-+.
T Consensus 276 Gvsl~g~~~~~l~s~------l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI~ 349 (390)
T COG3004 276 GVSLQGVSLSGLTSP------LTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIA 349 (390)
T ss_pred Ccccccccccccccc------hHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHHH
Confidence 98876 4444433 345666667789998888777643 4678888777775555556777777
Q ss_pred hhccccc
Q 047130 436 NISRNIE 442 (815)
Q Consensus 436 ~~~~~~~ 442 (815)
+.+++..
T Consensus 350 ~LAf~~~ 356 (390)
T COG3004 350 SLAFGSE 356 (390)
T ss_pred HHhcCCh
Confidence 7777653
No 41
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=98.50 E-value=9.3e-07 Score=85.12 Aligned_cols=141 Identities=16% Similarity=0.101 Sum_probs=92.3
Q ss_pred ceeEEeee-cCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhcccc---ccCCcccchHHHHHHHHHH
Q 047130 495 LRILACIY-RPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKK---TVSNRSYSENVILSFKLFE 570 (815)
Q Consensus 495 lrILv~i~-~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~---~~~~~~~~~~i~~af~~~~ 570 (815)
-+|++++| .++....+.+.+...+. .....++++++++-................ ........++..+..++..
T Consensus 6 ~~il~~~d~~s~~~~~a~~~a~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
T COG0589 6 KKILVAVDVGSEAAEKALEEAVALAK--RLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA 83 (154)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHH--hcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 57999999 99999999999999884 456777788888755432211110000000 0000112233444444433
Q ss_pred HhcCcceE-EEEEEEecCCCCh-hHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEec
Q 047130 571 EKNWGTAC-VYPFTAISPPKLM-HEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILID 648 (815)
Q Consensus 571 ~~~~~~v~-v~~~~~vs~~~~m-~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvd 648 (815)
+. .++. ++..+..+ +. .+.|+..|.+.++|+||||.+|+++.++.+ ++++.++|++++||||.++..
T Consensus 84 ~~--~~~~~~~~~~~~g---~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~l------lGsvs~~v~~~~~~pVlvv~~ 152 (154)
T COG0589 84 EA--AGVPVVETEVVEG---SPSAEEILELAEEEDADLIVVGSRGRSGLSRLL------LGSVAEKVLRHAPCPVLVVRS 152 (154)
T ss_pred HH--cCCCeeEEEEecC---CCcHHHHHHHHHHhCCCEEEECCCCCcccccee------eehhHHHHHhcCCCCEEEEcc
Confidence 33 2333 35555444 55 699999999999999999999998887755 555556999999999998743
No 42
>PRK09982 universal stress protein UspD; Provisional
Probab=98.39 E-value=1.5e-06 Score=83.47 Aligned_cols=123 Identities=15% Similarity=0.200 Sum_probs=77.0
Q ss_pred cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccc-------cccchhhhh---HHHHHHHhcccCCCCCC
Q 047130 665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEM-------ISTNWEKVL---DSEVLKEVKPENNFNQR 734 (815)
Q Consensus 665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~-------~~~~~~~~~---d~~~l~~~~~~~~~~~~ 734 (815)
.++|+++.+|+++.+.|+++|.++|+.++++++++|++++.... ..++.++.. -++.+++...... ...
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 81 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQ-WPK 81 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcC-CCc
Confidence 46899999999999999999999999999999999998642110 001111111 1134555443321 111
Q ss_pred EEEEEEEecCc---HHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEEe
Q 047130 735 VKYVVEMVNEG---QETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQ 809 (815)
Q Consensus 735 v~y~e~~V~~g---~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvvq 809 (815)
+ +..+..| +++.+.+++.+. |||+||+| + +|+.+|- | +-+-.... ++.+||||-
T Consensus 82 ~---~~~v~~G~p~~~I~~~A~~~~a--DLIVmG~~-~------~~~~~~~-----~-va~~V~~~---s~~pVLvv~ 138 (142)
T PRK09982 82 T---KLRIERGEMPETLLEIMQKEQC--DLLVCGHH-H------SFINRLM-----P-AYRGMINK---MSADLLIVP 138 (142)
T ss_pred c---eEEEEecCHHHHHHHHHHHcCC--CEEEEeCC-h------hHHHHHH-----H-HHHHHHhc---CCCCEEEec
Confidence 2 2222333 667777777555 99999976 5 5666652 3 33333333 677899873
No 43
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.34 E-value=2.1e-06 Score=80.57 Aligned_cols=127 Identities=21% Similarity=0.277 Sum_probs=80.9
Q ss_pred cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccccch-hh----hhHHHHHHH-----hcccCCCCCC
Q 047130 665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNW-EK----VLDSEVLKE-----VKPENNFNQR 734 (815)
Q Consensus 665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~~~~-~~----~~d~~~l~~-----~~~~~~~~~~ 734 (815)
.+||+++++++++.++|+++|.++|+..+++++++|+.++......... .. ..++..... .... ....
T Consensus 2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 79 (140)
T PF00582_consen 2 YKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEA--EGGI 79 (140)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTS
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhh--hccc
Confidence 3699999999999999999999999999999999999975332111100 00 000000000 0000 1122
Q ss_pred EEEEEEEecC-cHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEE
Q 047130 735 VKYVVEMVNE-GQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVV 808 (815)
Q Consensus 735 v~y~e~~V~~-g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvv 808 (815)
..+......+ +.++.+++++ .++||+++|++++ .++.+| -+|-+.+-++.. +..+||||
T Consensus 80 ~~~~~~~~~~~~~~i~~~~~~--~~~dliv~G~~~~------~~~~~~----~~gs~~~~l~~~---~~~pVlvv 139 (140)
T PF00582_consen 80 VIEVVIESGDVADAIIEFAEE--HNADLIVMGSRGR------SGLERL----LFGSVAEKLLRH---APCPVLVV 139 (140)
T ss_dssp EEEEEEEESSHHHHHHHHHHH--TTCSEEEEESSST------TSTTTS----SSHHHHHHHHHH---TSSEEEEE
T ss_pred eeEEEEEeeccchhhhhcccc--ccceeEEEeccCC------CCccCC----CcCCHHHHHHHc---CCCCEEEe
Confidence 3333333333 3456677766 4469999999986 445444 388888888886 67799987
No 44
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.33 E-value=1.3e-06 Score=81.54 Aligned_cols=123 Identities=16% Similarity=0.155 Sum_probs=76.9
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccccchhhhhHHHHHHHhcccCCCCCCEEEEEEEecCcH
Q 047130 667 RVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNEGQ 746 (815)
Q Consensus 667 ~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~V~~g~ 746 (815)
||+++.+|++..++|+.+|.++|+..+++++++++.+++.....++.++.++ ++.+..+. . +.+.....+..+ .+
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~-~~~~~~~~-~-~~~~~~~~~~~~--~~ 75 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLA-EALRLAEE-L-GAEVVTLPGDDV--AE 75 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHH-HHHHHHHH-c-CCEEEEEeCCcH--HH
Confidence 5899999999999999999999999999999999987633211112222222 33333322 1 111111111111 24
Q ss_pred HHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEE
Q 047130 747 ETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVV 808 (815)
Q Consensus 747 ~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvv 808 (815)
++.+++++.+. |++++|+|++ .++.++ -+|-..+-+...- .+..|||+
T Consensus 76 ~I~~~~~~~~~--dllviG~~~~------~~~~~~----~~Gs~~~~v~~~a--~~~~v~v~ 123 (124)
T cd01987 76 AIVEFAREHNV--TQIVVGKSRR------SRWREL----FRGSLVDRLLRRA--GNIDVHIV 123 (124)
T ss_pred HHHHHHHHcCC--CEEEeCCCCC------chHHHH----hcccHHHHHHHhC--CCCeEEEe
Confidence 47777776555 9999999987 444443 5677777666652 25577775
No 45
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.30 E-value=3.9e-06 Score=78.85 Aligned_cols=127 Identities=15% Similarity=0.149 Sum_probs=78.3
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCcccc--ccchhhhhHHHHHHHhcccCCCCCCEEEEEEEecC
Q 047130 667 RVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMI--STNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNE 744 (815)
Q Consensus 667 ~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~--~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~V~~ 744 (815)
+|+++..|.++.+.++++|.++|+..+++++++|+.++..... ..+.+++..++.++.........+ +........+
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~ 79 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLG-VPVHTIIRID 79 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcC-CceEEEEEec
Confidence 5889999999999999999999999999999999986522110 001111111233333322211111 1111122222
Q ss_pred ---cHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEEe
Q 047130 745 ---GQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQ 809 (815)
Q Consensus 745 ---g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvvq 809 (815)
.+++.+.+++.+ .||+++|.+++ +++.+ .-+|-.-+-+... ++.+||||+
T Consensus 80 ~~~~~~I~~~a~~~~--~dlIV~G~~~~------~~~~~----~~lGs~~~~v~~~---~~~pvlvv~ 132 (132)
T cd01988 80 HDIASGILRTAKERQ--ADLIIMGWHGS------TSLRD----RLFGGVIDQVLES---APCDVAVVK 132 (132)
T ss_pred CCHHHHHHHHHHhcC--CCEEEEecCCC------CCccc----eecCchHHHHHhc---CCCCEEEeC
Confidence 245666666544 59999999987 33322 3578777777766 677999984
No 46
>PRK15005 universal stress protein F; Provisional
Probab=98.22 E-value=1.2e-05 Score=77.00 Aligned_cols=125 Identities=14% Similarity=0.143 Sum_probs=77.5
Q ss_pred cceEEEEecCCcc--HHHHHHHHHHHhhCCCeEEEEEEeeecCccc--------cc----cchhhhhHHHHHHHhcccCC
Q 047130 665 SFRVAMIFLGGSD--DREALTLAKRMSQNTSINLTVFRFIVKTDEM--------IS----TNWEKVLDSEVLKEVKPENN 730 (815)
Q Consensus 665 ~~~I~~~f~gg~D--dreAL~~a~rma~~~~v~ltvl~~~~~~~~~--------~~----~~~~~~~d~~~l~~~~~~~~ 730 (815)
.++|+++.+|.++ .+.|+++|.++|+..+++++++++.++.... .. ++.+++. ++.++++..+..
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~ 80 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEA-KSQLEEIIKKFK 80 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHH-HHHHHHHHHHhC
Confidence 3689999999998 4799999999999999999999998641110 00 0011111 133344333221
Q ss_pred CCCCEEEEEEEecCc---HHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEE
Q 047130 731 FNQRVKYVVEMVNEG---QETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLV 807 (815)
Q Consensus 731 ~~~~v~y~e~~V~~g---~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLv 807 (815)
...+.+. ..+..| +++.+.+++ .++|||+||+| + .|+.+| =+|-..+-+... ++.+|||
T Consensus 81 -~~~~~~~-~~v~~G~p~~~I~~~a~~--~~~DLIV~Gs~-~------~~~~~~----llGS~a~~vl~~---a~cpVlv 142 (144)
T PRK15005 81 -LPTDRVH-VHVEEGSPKDRILELAKK--IPADMIIIASH-R------PDITTY----LLGSNAAAVVRH---AECSVLV 142 (144)
T ss_pred -CCCCceE-EEEeCCCHHHHHHHHHHH--cCCCEEEEeCC-C------CCchhe----eecchHHHHHHh---CCCCEEE
Confidence 1122222 223344 234444444 34699999987 4 355444 468888888877 7789999
Q ss_pred E
Q 047130 808 V 808 (815)
Q Consensus 808 v 808 (815)
|
T Consensus 143 V 143 (144)
T PRK15005 143 V 143 (144)
T ss_pred e
Confidence 7
No 47
>PRK10116 universal stress protein UspC; Provisional
Probab=98.17 E-value=6e-06 Score=78.99 Aligned_cols=124 Identities=13% Similarity=0.216 Sum_probs=76.7
Q ss_pred cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCc-c---ccc--cchhhhh---HHHHHHHhcccCCCCCCE
Q 047130 665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTD-E---MIS--TNWEKVL---DSEVLKEVKPENNFNQRV 735 (815)
Q Consensus 665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~-~---~~~--~~~~~~~---d~~~l~~~~~~~~~~~~v 735 (815)
.++|+++.++.++...|+++|.++|+..++++|++++..+.. . ... ++.+++. -++++++...+. + +
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~---~ 78 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDA-D---Y 78 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-C---C
Confidence 479999999999999999999999999999999999874311 0 000 0111111 124455544332 1 1
Q ss_pred EEEEEEecCc---HHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEEe
Q 047130 736 KYVVEMVNEG---QETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQ 809 (815)
Q Consensus 736 ~y~e~~V~~g---~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvvq 809 (815)
......+..| +++.+.+++ .++||+|+|+|++ +++++| +...+-++.. ++.+||||-
T Consensus 79 ~~~~~~~~~G~~~~~I~~~a~~--~~~DLiV~g~~~~------~~~~~~------~s~a~~v~~~---~~~pVLvv~ 138 (142)
T PRK10116 79 PIEKTFIAYGELSEHILEVCRK--HHFDLVICGNHNH------SFFSRA------SCSAKRVIAS---SEVDVLLVP 138 (142)
T ss_pred CeEEEEEecCCHHHHHHHHHHH--hCCCEEEEcCCcc------hHHHHH------HHHHHHHHhc---CCCCEEEEe
Confidence 1122233333 334455554 3469999999987 556554 2235555555 677999983
No 48
>PRK15456 universal stress protein UspG; Provisional
Probab=98.15 E-value=1.7e-05 Score=75.97 Aligned_cols=125 Identities=16% Similarity=0.184 Sum_probs=77.5
Q ss_pred cceEEEEecCCc--cHHHHHHHHHHHhhCCCeEEEEEEeeecCccc------cc-cchhh---hhHHHHHHHhcccCCCC
Q 047130 665 SFRVAMIFLGGS--DDREALTLAKRMSQNTSINLTVFRFIVKTDEM------IS-TNWEK---VLDSEVLKEVKPENNFN 732 (815)
Q Consensus 665 ~~~I~~~f~gg~--DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~------~~-~~~~~---~~d~~~l~~~~~~~~~~ 732 (815)
.+||+++.+|++ ..+.|+++|.++|+.. .+++++|+.++.... .+ ++.++ +.-++.++++..+...
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 79 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTI- 79 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCC-
Confidence 468999999984 7899999999999875 589999998642110 00 11111 1112334444432211
Q ss_pred CCEEEEEEEecCc---HHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEE
Q 047130 733 QRVKYVVEMVNEG---QETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVV 808 (815)
Q Consensus 733 ~~v~y~e~~V~~g---~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvv 808 (815)
+...+. ..+..| +++.+.+++.+ .||+|||+|++ |+.++ =+|-..+-++.. ++.+||||
T Consensus 80 ~~~~v~-~~v~~G~~~~~I~~~a~~~~--~DLIVmG~~g~-------~~~~~----llGS~a~~v~~~---a~~pVLvV 141 (142)
T PRK15456 80 DPSRIK-QHVRFGSVRDEVNELAEELG--ADVVVIGSRNP-------SISTH----LLGSNASSVIRH---ANLPVLVV 141 (142)
T ss_pred CCcceE-EEEcCCChHHHHHHHHhhcC--CCEEEEcCCCC-------Cccce----ecCccHHHHHHc---CCCCEEEe
Confidence 122222 223333 34555555544 49999999975 23332 478888888888 77899998
No 49
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.15 E-value=0.00034 Score=74.41 Aligned_cols=256 Identities=12% Similarity=0.097 Sum_probs=146.9
Q ss_pred HHHHHHHhhcccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHH
Q 047130 142 YILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVS 221 (815)
Q Consensus 142 li~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~ 221 (815)
+..++|-.|-++|++...+..||...+-+.=+.++.+++.+++.+++. +..-....+.+-.+++.|.-..=..+..
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~----~g~~Gls~laiiaa~~~~Ng~ly~al~~ 126 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGA----EGIFGLSGLAIVAAMSNSNGGLYAALMG 126 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCc----ccccchHHHHHHHHHhcCcHHHHHHHHH
Confidence 456789999999999998888888887777778888777777766653 2222355666666777777676677777
Q ss_pred HhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 047130 222 DLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPV 301 (815)
Q Consensus 222 el~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~ 301 (815)
|+| -++|.|-.. ...++|.=-+ .++. +.. .++. +.| .
T Consensus 127 ~yG-~~~d~gA~~--~~sl~~GPf~----------------------tm~a---Lga----------~gLA-~ip----~ 163 (312)
T PRK12460 127 EFG-DERDVGAIS--ILSLNDGPFF----------------------TMLA---LGA----------AGLA-NIP----I 163 (312)
T ss_pred HcC-CHhhhhHHh--hhhhccCcHH----------------------HHHH---HHH----------HHHh-cCC----h
Confidence 777 344555221 1112221111 1111 110 0111 111 0
Q ss_pred chhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccc
Q 047130 302 NSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLD 381 (815)
Q Consensus 302 ~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~ 381 (815)
. .+ -+.+=|++.|+++.|..+ .+.+.+++= ..+.+|+|-+..|.++|++++.+.
T Consensus 164 ---~---~l---------------v~lilpILiGmilGNld~---~~~~~l~~G-i~f~I~f~~f~LG~~lnl~~I~~~- 217 (312)
T PRK12460 164 ---M---AL---------------VAALLPLVLGMILGNLDP---DMRKFLTKG-GPLLIPFFAFALGAGINLSMLLQA- 217 (312)
T ss_pred ---H---HH---------------HHHHHHHHHHHHHhccch---hhHHHHhcc-ceEeHHHHHHHhcCCeeHHHHHHh-
Confidence 0 00 012345667777777432 233333332 345899999999999999998765
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHH--HHHhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHH
Q 047130 382 DNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALA--LIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVT 459 (815)
Q Consensus 382 ~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lg--l~m~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~ 459 (815)
++ ..+++.++.++.-...+++..|++|.+.+-+..+| -.-+.=|-..++-. .-..+..-+..-..+..++++|
T Consensus 218 G~---~GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAa--dP~~~~~~~~Ataqvaa~vivT 292 (312)
T PRK12460 218 GL---AGILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAA--DPSLAPVAAAATAQVAASVIVT 292 (312)
T ss_pred Ch---HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHHHHHHH
Confidence 33 23444444444555666666788898888877776 43222222222221 1222223333344455667777
Q ss_pred HHHHHHHHHhhhcccc
Q 047130 460 AIIIPILVKFLYDPSR 475 (815)
Q Consensus 460 t~i~~~lv~~ly~p~~ 475 (815)
.+++|.+..|++|+.+
T Consensus 293 ail~P~~t~~~~k~~~ 308 (312)
T PRK12460 293 AILTPLLTSWVAKKEA 308 (312)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7778888888886543
No 50
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.96 E-value=3.9e-05 Score=84.44 Aligned_cols=132 Identities=13% Similarity=0.071 Sum_probs=83.7
Q ss_pred ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHh--
Q 047130 495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEK-- 572 (815)
Q Consensus 495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~-- 572 (815)
-|||+|+|+|+++..+++-+..+++....+.++|++|+++...... ..+ ......+++.+..++..+.
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~----~~~------~~~~~~eelle~~~~~~~~~l 75 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP----EGQ------DELAAAEELLERVEVWATEDL 75 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc----chh------HHHHHHHHHHHHHHHHHHHhh
Confidence 4799999999999999999999994311368999999998432110 000 0011123333333333221
Q ss_pred --cCcceEEEEEEEec-----CCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCce
Q 047130 573 --NWGTACVYPFTAIS-----PPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSV 643 (815)
Q Consensus 573 --~~~~v~v~~~~~vs-----~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsV 643 (815)
...+++++..+... ...+.++.|+++|+|+++|+|||+=.-+. .++.+.+|.+-.. |.++-|.+
T Consensus 76 ~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~------~~~~~~~~~~~~~-~~~~~~~~ 146 (357)
T PRK12652 76 GDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNP------GGTAPMLQPLERE-LARAGITY 146 (357)
T ss_pred hcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCC------CCCCcccchHHHH-HHhcCCce
Confidence 11467887776552 12489999999999999999999954332 2344556666644 45555553
No 51
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=97.96 E-value=5.1e-05 Score=72.82 Aligned_cols=125 Identities=14% Similarity=0.155 Sum_probs=75.4
Q ss_pred cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccc--c---c--cchhhhhH---HHHHHHhcccCCCCCC
Q 047130 665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEM--I---S--TNWEKVLD---SEVLKEVKPENNFNQR 734 (815)
Q Consensus 665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~--~---~--~~~~~~~d---~~~l~~~~~~~~~~~~ 734 (815)
.+||+++.+|.+..+.|+.+|..+|+.++++++++++..+.... . . ++.+++.. .+.++++..+. +
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~--- 78 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNA-G--- 78 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhC-C---
Confidence 46999999999999999999999999999999999985321110 0 0 01111111 12233333221 1
Q ss_pred EEEEEEEecC---cHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEEeee
Q 047130 735 VKYVVEMVNE---GQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQQQ 811 (815)
Q Consensus 735 v~y~e~~V~~---g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvvqq~ 811 (815)
+...+..+.. .+++.+.+++.+ +||||+|+|++ ++. .+|-.-+-+... ++.+||||...
T Consensus 79 ~~~~~~~~~~G~p~~~I~~~a~~~~--~DLIV~Gs~~~-------~~~------~lgSva~~v~~~---a~~pVLvv~~~ 140 (144)
T PRK15118 79 YPITETLSGSGDLGQVLVDAIKKYD--MDLVVCGHHQD-------FWS------KLMSSARQLINT---VHVDMLIVPLR 140 (144)
T ss_pred CCceEEEEEecCHHHHHHHHHHHhC--CCEEEEeCccc-------HHH------HHHHHHHHHHhh---CCCCEEEecCC
Confidence 1112223322 345677776654 59999999952 221 145455555554 67799999743
No 52
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=97.93 E-value=0.0001 Score=68.24 Aligned_cols=126 Identities=22% Similarity=0.306 Sum_probs=76.2
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCcccc---ccchhhhhHHHHHHHhcccCCC-CCCEEEEEEEe
Q 047130 667 RVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMI---STNWEKVLDSEVLKEVKPENNF-NQRVKYVVEMV 742 (815)
Q Consensus 667 ~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~---~~~~~~~~d~~~l~~~~~~~~~-~~~v~y~e~~V 742 (815)
+|++++.+++..+.++.+|.+||+..+.+++++++..+..... .+....+. ++.++++...... .-.+.+.-..-
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEA-RALLEALREALAEAGVKVETVVLEG 79 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHH-HHHHHHHHHHHhcCCCceEEEEecC
Confidence 5789999999999999999999999999999999986532210 00111122 2444444432111 11222221122
Q ss_pred cCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEE
Q 047130 743 NEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVV 808 (815)
Q Consensus 743 ~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvv 808 (815)
....++.+.+++ .++|++++|++++ .++.+| -.|.+.+-|... ++.+||+|
T Consensus 80 ~~~~~i~~~~~~--~~~dlvvig~~~~------~~~~~~----~~~~~~~~ll~~---~~~pvliv 130 (130)
T cd00293 80 DPAEAILEAAEE--LGADLIVMGSRGR------SGLRRL----LLGSVAERVLRH---APCPVLVV 130 (130)
T ss_pred CCHHHHHHHHHH--cCCCEEEEcCCCC------Ccccee----eeccHHHHHHhC---CCCCEEeC
Confidence 223456666666 4469999999876 222221 457777777765 55577664
No 53
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=97.79 E-value=0.065 Score=59.87 Aligned_cols=302 Identities=14% Similarity=0.117 Sum_probs=155.6
Q ss_pred CCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhcchhhHHHHHHHHHH
Q 047130 96 GIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLI 175 (815)
Q Consensus 96 ~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~~i 175 (815)
.+|.++--++.|+++.. +|.++ ++.+.+..+.+.+..+-+-+++.=++.|+++++|.++|.+.. +..-.+
T Consensus 24 ~l~~~vl~~~~~~~lsn--lgli~-------~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~-F~~~~~ 93 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSN--LGLID-------SPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLA-FLIGAV 93 (378)
T ss_pred hcCHHHHHHHHHHHHHH--CCCcC-------CCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHH-HHHHHH
Confidence 47888888888888886 45551 123456778888888888888888899999999999887544 333344
Q ss_pred HHHHHHHHHHHHHHhh-ccCcchHHHHHHHHHHHhhc------cHHHHHHHHHHhhhccChhHHHHHHHHH-HHHHHHHH
Q 047130 176 PFLLGAAALEKMSRIL-GIGMEDKMKLWVVTVVHSLS------RFPSIACLVSDLRIINSELGRLGLSCAL-VSEMIGLI 247 (815)
Q Consensus 176 p~~~~~~~~~~l~~~~-~~~~~~~~~~l~ig~~ls~T------s~~vv~~iL~el~ll~s~~g~lals~a~-v~D~~~~~ 247 (815)
..++|..+++.+.+.. ++ ..|. ++.+++-| .+.-+... ++ .+ .-.+++++ .|+++.-+
T Consensus 94 g~viG~~va~~l~~~~l~~--~~wk----~ag~l~gsyiGGs~N~~Av~~a---l~---~~--~~~~~a~~aaDnv~~~~ 159 (378)
T PF05684_consen 94 GTVIGAVVAFLLFGGFLGP--EGWK----IAGMLAGSYIGGSVNFVAVAEA---LG---VS--DSLFAAALAADNVVMAL 159 (378)
T ss_pred HHHHHHHHHHHHHhhcccc--hHHH----HHHHHHhcccCchhHHHHHHHH---HC---CC--HHHHHHHHHHHHHHHHH
Confidence 4555666666554432 21 1222 22223222 22233332 22 22 23444444 44444444
Q ss_pred HHHHHHHHHhhc-----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCCchhHHHHHHHHHHHHHHHH
Q 047130 248 LTRSAIWIASIY-----HAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQ--TPEGKPVNSLHIHNIIMLALGAGYIS 320 (815)
Q Consensus 248 ll~v~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r--~~~~~~~~e~~~~~~l~~~l~~~~i~ 320 (815)
.+.+...+.... ...+...-..-. -....+. .+++++.. ......+...+....++
T Consensus 160 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~-~~l~~~la~a~~v~~~s 222 (378)
T PF05684_consen 160 WFAFLLALPPFARKFDRWTKADTSSIEAL----------------EEEIEAEEAEWARKPIS-QDLAFLLAVAFAVVALS 222 (378)
T ss_pred HHHHHHHHhhhhHHhhhccCCCccccchh----------------hhhhhhhhhccccCCcH-hHHHHHHHHHHHHHHHH
Confidence 444444332200 000000000000 0000000 01111111 22333333333332222
Q ss_pred ----HHh-----Cch----hhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHH
Q 047130 321 ----DLF-----GQH----VYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKS 387 (815)
Q Consensus 321 ----e~~-----G~~----~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~ 387 (815)
+.+ +.+ .++-....|++..- +|..+.+ .--+++ ..+++-+||+.+|++.|+..+.+. ++
T Consensus 223 ~~la~~l~~~~~~~~~~~~~il~~tt~~l~~~~-~~~~~~l-~g~~~l-g~~lly~ffa~IGa~a~i~~l~~a-p~---- 294 (378)
T PF05684_consen 223 HALAAWLPPLFAGISSSTWLILTVTTLGLATSF-PPFRKLL-RGASEL-GTFLLYLFFAVIGASADISELLDA-PS---- 294 (378)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHhc-cchhhcC-CchHHH-HHHHHHHHHHHHccccCHHHHHHh-HH----
Confidence 222 111 22233344444432 3444443 233344 578888999999999999988874 32
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchh
Q 047130 388 TAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQ 447 (815)
Q Consensus 388 ~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~ 447 (815)
..++.++.+..-.+..+..++++|.|..+...-+- =|.-|.........+++..+..+-
T Consensus 295 ~~l~~~i~l~iH~~l~l~~~kl~k~~l~~~~vAS~-AnIGGpaTA~a~A~a~~~~Lv~pg 353 (378)
T PF05684_consen 295 LFLFGFIILAIHLLLMLILGKLFKIDLFELLVASN-ANIGGPATAPAVAAAKGPSLVPPG 353 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhh-cccCCcchHHHHHHhcCCccHHHH
Confidence 33445555667888888999999999987766554 356566655555555554444443
No 54
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.63 E-value=0.0066 Score=64.44 Aligned_cols=256 Identities=15% Similarity=0.113 Sum_probs=139.5
Q ss_pred HHHHHHHHhhcccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC--cchHHHHHHHHHHHhhccHHHHHH
Q 047130 141 GYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIG--MEDKMKLWVVTVVHSLSRFPSIAC 218 (815)
Q Consensus 141 gli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~--~~~~~~~l~ig~~ls~Ts~~vv~~ 218 (815)
-+..++|-.|-++|++...+..||...+-+.=+++..+++.+++.+++.. +.+ ..-....+.+-.+++.+....=..
T Consensus 50 iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~-Gi~~g~f~GlS~LAiiaa~~~~NggLY~a 128 (314)
T PF03812_consen 50 IIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPE-GIQSGFFLGLSALAIIAAMTNSNGGLYLA 128 (314)
T ss_pred HHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCcc-ccccccccchHHHHHHHHHhcCCHHHHHH
Confidence 34567899999999999999999998888888888888888777766541 100 012345666667777777777777
Q ss_pred HHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 047130 219 LVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEG 298 (815)
Q Consensus 219 iL~el~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~ 298 (815)
+..|+| -++|.|- .+...++|.=.+.++++-.+ +. .
T Consensus 129 L~~~yG-d~~D~gA--~~i~sl~~GPf~tMl~LG~s----G~-------------------------------------a 164 (314)
T PF03812_consen 129 LMGQYG-DEEDVGA--FSILSLNDGPFFTMLALGAS----GL-------------------------------------A 164 (314)
T ss_pred HHHHhC-CHHHhHH--HHHHHhhhhHHHHHHHHhhc----cc-------------------------------------c
Confidence 777776 2444442 11111222211111111000 00 0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhc
Q 047130 299 KPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIK 378 (815)
Q Consensus 299 ~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~ 378 (815)
..+ +.. +=..+=|++.|+++.|-. +++.+-+.+- ...++|+|-...|..+|+..+.
T Consensus 165 -~ip---~~~----------------lv~~llP~iiG~iLGNLD---~~~r~fl~~~-~~~lIPF~~f~lGa~inl~~i~ 220 (314)
T PF03812_consen 165 -NIP---WMS----------------LVAALLPIIIGMILGNLD---PDFRKFLAPG-VPILIPFFGFALGAGINLSNII 220 (314)
T ss_pred -CCC---HHH----------------HHHHHHHHHHHHHHhcCC---HHHHHHHhcC-CCeeeehhhhhhcCCCCHHHHH
Confidence 000 000 012244788888888864 3444444433 5789999999999999999887
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCChHHHHHHHHHHhhhhhHHH----HHHhhcccccccchhHHHHHH
Q 047130 379 LLDDNLAKSTAVIVAVVVLAKVATTMIPPLYC-KVPKRDAFALALIMSTKGIVEI----STYNISRNIESLTDQMFSFLT 453 (815)
Q Consensus 379 ~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~-~~~~~~~~~lgl~m~~kG~v~l----i~~~~~~~~~~i~~~~~~~lv 453 (815)
.. +.. .+++-++.++.--...++.-++. |-+-.- |+..++-+.-+. +++..--+.....+..-..+.
T Consensus 221 ~a-Gl~---GIlLgv~~~~vtg~~~~~~dr~i~~~~g~a----G~A~sstAGnavatPaaiA~~dP~~~~~~~~ATaQvA 292 (314)
T PF03812_consen 221 KA-GLS---GILLGVIVVVVTGIPLYLADRLILKGNGVA----GAAISSTAGNAVATPAAIAAADPSFAPYAASATAQVA 292 (314)
T ss_pred Hh-Ccc---hHHHHHHHHHHHhHHHHHHHHHHcCCCCce----eehHHhhhhhhhhhhHHHHHhChhhHhhHHHHHHHHH
Confidence 55 221 12222222222223344444442 222222 333333333222 222222222333334445566
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 047130 454 VEILVTAIIIPILVKFLYDP 473 (815)
Q Consensus 454 ~~~ll~t~i~~~lv~~ly~p 473 (815)
.++++|.+++|.+..|++|+
T Consensus 293 aavIvTail~P~lt~~~~kr 312 (314)
T PF03812_consen 293 AAVIVTAILTPILTSWWAKR 312 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 77778888888888887754
No 55
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.30 E-value=0.001 Score=73.41 Aligned_cols=104 Identities=12% Similarity=0.061 Sum_probs=64.3
Q ss_pred CcceEEEEecCCccHHHHHHHHHHHhhCC--CeEEEEEEeeecCccccccchhhhhHHHHHHHhcccCC-----CCCCEE
Q 047130 664 SSFRVAMIFLGGSDDREALTLAKRMSQNT--SINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENN-----FNQRVK 736 (815)
Q Consensus 664 ~~~~I~~~f~gg~DdreAL~~a~rma~~~--~v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-----~~~~v~ 736 (815)
..+||+++++|.+..+.|+++|..+|+.. ++++|++|++++.......+...+..++.+++.+.... ....+.
T Consensus 4 ~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~~~~~gV~ 83 (357)
T PRK12652 4 AANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLGDDASSVT 83 (357)
T ss_pred ccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCc
Confidence 36799999999999999999999999985 69999999986522111111111111122322222110 012344
Q ss_pred EEEEEec---------C-cHHHHHHHHhhCCCccEEEEcccCC
Q 047130 737 YVVEMVN---------E-GQETLAKIQSVVPKYDLVIVGRRDN 769 (815)
Q Consensus 737 y~e~~V~---------~-g~~~~~~i~~~~~~~DLiivG~~~~ 769 (815)
+....+. + .+++++++++.+ +||||||..-.
T Consensus 84 ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~--aDLIVm~~~~~ 124 (357)
T PRK12652 84 IETALLGTDEYLFGPGDYAEVLIAYAEEHG--IDRVVLDPEYN 124 (357)
T ss_pred eEEEEEeccccccCCCCHHHHHHHHHHHcC--CCEEEECCCCC
Confidence 4444432 2 456777777754 59999999754
No 56
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.25 E-value=0.012 Score=62.11 Aligned_cols=259 Identities=12% Similarity=0.141 Sum_probs=131.0
Q ss_pred HHHHHHHhhcccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCc--chHHHHHHHHHHHhhccHHHHHHH
Q 047130 142 YILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGM--EDKMKLWVVTVVHSLSRFPSIACL 219 (815)
Q Consensus 142 li~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~--~~~~~~l~ig~~ls~Ts~~vv~~i 219 (815)
+..++|-.|-++|++...+..||...+-+.=++++.+++.+++.+++.. +.+. .-....+.+-.+++.|.-..=+.+
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~-Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL 129 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPED-GVEVGFFAGLSTLALVAAMDMTNGGLYASI 129 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcC-CccccceeccHHHHHHHHHhCCcHHHHHHH
Confidence 4567899999999999888888887777777778888777777766531 0000 113445555556666665655666
Q ss_pred HHHhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 047130 220 VSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEGK 299 (815)
Q Consensus 220 L~el~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~ 299 (815)
..|+| -++|.|-.. ...++|.=-+.+++ +.. .|
T Consensus 130 ~~qyG-d~~D~gA~~--i~sl~~GPf~TMi~-------------------------LG~------------------sG- 162 (314)
T TIGR00793 130 MQQYG-TKEEAGAFV--LMSLESGPLMTMVI-------------------------LGT------------------AG- 162 (314)
T ss_pred HHHcC-CHhhhhhhh--hhhhccCcHHHHHH-------------------------Hhh------------------cc-
Confidence 66666 244444211 11122211111100 000 00
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcc
Q 047130 300 PVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKL 379 (815)
Q Consensus 300 ~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~ 379 (815)
..+..+.. +=..+=|++.|+++.|-.+ ++.+-+.+- ...++|+|-...|..+|++.+..
T Consensus 163 -lA~ip~~~----------------lv~~ilPlliG~ilGNLD~---~~r~fl~~~-~~~lIpFf~FaLGaginl~~i~~ 221 (314)
T TIGR00793 163 -IASFEPHV----------------FVGAVLPFLVGFALGNLDP---ELRDFFSKA-VQTLIPFFAFALGNTIDLGVIIQ 221 (314)
T ss_pred -CCCCCHHH----------------HHHHHHHHHHHHHHhcCCH---HHHHHhccC-CCeeeehhhhhhcCCCCHHHHHH
Confidence 00000000 0122447888888888643 343334333 46789999999999999988765
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhHHHHHHHHHHH
Q 047130 380 LDDNLAKSTAVIVAVVVLAKVATTMIPPLYCK-VPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILV 458 (815)
Q Consensus 380 ~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~-~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll 458 (815)
. +.. .+++-+...+.--...++.-++.+ -+..-+...+-.-..--.+..+++..--+.....+..-..+..++++
T Consensus 222 a-Gl~---GIlLGl~v~~vtG~~~~~~dr~~~g~~g~aG~A~sstAGnAvatPaavA~adPs~~~~a~~ATaqvAaaviv 297 (314)
T TIGR00793 222 T-GLL---GILLGVSVIILTGIPLILADKFIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPVAPAATALVATSVIV 297 (314)
T ss_pred h-Ccc---hHHHHHHHHHHHhHHHHHHHHHhcCCCCchhhHHHHHHHHhhhhHHHHHHhChhhhhhHHHHHHHHHHHHHH
Confidence 4 221 112112222223344455555542 22222222221111111112223322222222333333334556667
Q ss_pred HHHHHHHHHHhhhcc
Q 047130 459 TAIIIPILVKFLYDP 473 (815)
Q Consensus 459 ~t~i~~~lv~~ly~p 473 (815)
|.+++|.+..|++|+
T Consensus 298 TaiL~Pilta~~~kr 312 (314)
T TIGR00793 298 TSLLVPIATVWWSKK 312 (314)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777778888887764
No 57
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.23 E-value=0.28 Score=53.84 Aligned_cols=85 Identities=18% Similarity=0.181 Sum_probs=56.2
Q ss_pred HhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhcchhhHHHHHH
Q 047130 92 LKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLL 171 (815)
Q Consensus 92 lkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~ 171 (815)
+++.+++..+--|+.|+++|+......+. ..-| ...-.-+.+-++|.+ +.|.++++.++.+.|.+.+.+...
T Consensus 26 ~~~~~l~~~~~AillG~~l~n~~~~~~~~---~~~~-Gi~f~~k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~~ 97 (335)
T TIGR00698 26 LADPALSALFLAILLGMVAGNTIYPQRDE---EKKR-GVLFAKPFLLRIGIT----LYGFRLTFPYIADVGPNEIVADTL 97 (335)
T ss_pred hccCCCcHHHHHHHHHHHHhccccccchh---hccc-hHHHHHHHHHHHHHH----HHCccccHHHHHHhhHHHHHHHHH
Confidence 34568999999999999999854221211 0000 111233466678877 679999999999999988777666
Q ss_pred HHHHHHHHHHHHH
Q 047130 172 TLLIPFLLGAAAL 184 (815)
Q Consensus 172 ~~~ip~~~~~~~~ 184 (815)
.+...+.++..++
T Consensus 98 ~v~~~~~~~~~~g 110 (335)
T TIGR00698 98 ILTSTFFLTVFLG 110 (335)
T ss_pred HHHHHHHHHHHHH
Confidence 6666555544443
No 58
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=97.14 E-value=0.57 Score=51.07 Aligned_cols=332 Identities=16% Similarity=0.210 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCh--hHH-HHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhc
Q 047130 75 ELQIIVAFAVTHACHFVLKRFGIPM--IAS-QITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGV 151 (815)
Q Consensus 75 ll~i~lil~~~~~~~~llkrl~~P~--iv~-~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gl 151 (815)
..|.++.+.++...++++..+++|. ..| -+++|++.+- .+. + ...-+.+...|.+.+=-.+|.
T Consensus 8 ~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~--~~~------~------l~~P~~l~~~~q~ilG~~ig~ 73 (352)
T COG3180 8 ILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGL--RGL------T------LPLPRGLFKAGQVILGIMIGA 73 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--ccc------c------ccCChHHHHHHHHHHHHHHhh
Confidence 5678888888889999999998864 445 5566666552 111 0 111144556666777778999
Q ss_pred ccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChhH
Q 047130 152 KMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELG 231 (815)
Q Consensus 152 e~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g 231 (815)
.+..+.+... ++-+.+.+...+.+...+...++++.++-.. +...+++-..--..+ ....+-+|.| .+..
T Consensus 74 ~~t~s~l~~l-~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~---~~~Ta~~gs~PGgas---~m~~iA~d~g---Ad~~ 143 (352)
T COG3180 74 SLTPSVLDTL-KSNWPIVLVVLLLTLLSSILLGWLLKRFSIL---PGNTAFLGSSPGGAS---AMVSIAQDYG---ADLR 143 (352)
T ss_pred hcCHHHHHHH-HHcccHHHHHHHHHHHHHHHHHHHHHHhcCC---CcchhhHhcCCchHH---HHHHHHHHhC---CChh
Confidence 9988876433 3334444555556666666666666653211 111221111111111 1111113333 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------CCCchhH
Q 047130 232 RLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQTPEG------KPVNSLH 305 (815)
Q Consensus 232 ~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~------~~~~e~~ 305 (815)
+.+ +...+-.+.++..+-++.+.... .++..+. .+.....
T Consensus 144 ~VA--------------------------------l~Q~lRvl~Vvl~vplv~~~~~~--~~a~~~~~~~i~~~~~~~~~ 189 (352)
T COG3180 144 LVA--------------------------------LMQYLRVLFVVLLAPLVSRLFVG--DGANGSGTPEIWLPPVDWLI 189 (352)
T ss_pred HHH--------------------------------HHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCccccCchhhHHH
Confidence 111 11111111111111122221110 0111111 1111122
Q ss_pred HHHHHHHHHHHHHHHHHhCch--hhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchh
Q 047130 306 IHNIIMLALGAGYISDLFGQH--VYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDN 383 (815)
Q Consensus 306 ~~~~l~~~l~~~~i~e~~G~~--~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~ 383 (815)
+.+.....++.+.+...+++. .++|+++.|..+.-+....-++-+-+ ..+-.-+.-..+|.++|-..+......
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl----~~va~~~iG~~IG~~f~~~~l~~~~r~ 265 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWL----LAVAQALIGALIGSRFDRSILREAKRL 265 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHH----HHHHHHHHHHHHcccccHHHHHHhHhh
Confidence 444555566666666766664 57889998888876631221111111 122233445678999997666544322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHH
Q 047130 384 LAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIII 463 (815)
Q Consensus 384 ~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~ 463 (815)
.. ...+.++..++.-...+++..++.+.|+.++.. ..+|-|.-++.....+.+.. .+-+-+.=++=.++...+.
T Consensus 266 ~~-~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L---a~sPGGl~~ma~~A~~l~ad--~a~V~a~q~lRll~il~i~ 339 (352)
T COG3180 266 LP-AILVSIIALMAIAAGMAGLLSWLTGIDLNTAYL---ATSPGGLDTMAAIAAALGAD--PAFVMALQVLRLLFILLLG 339 (352)
T ss_pred cc-hHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HcCCCcHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHHH
Confidence 11 234444555566777788888899999988754 35788888877666554422 1112222233333444456
Q ss_pred HHHHHhhhccc
Q 047130 464 PILVKFLYDPS 474 (815)
Q Consensus 464 ~~lv~~ly~p~ 474 (815)
|++.|++.|.+
T Consensus 340 p~l~r~l~~~~ 350 (352)
T COG3180 340 PALARFLSKRA 350 (352)
T ss_pred HHHHHHHHHHc
Confidence 88888876544
No 59
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.02 E-value=0.47 Score=51.21 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhcc
Q 047130 133 TLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSR 212 (815)
Q Consensus 133 ~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts 212 (815)
+++..-.+.+.++||..|+.+..+.+++..|+.... +.+....|++.=++++.+...+. ...-+..|..+-.+.
T Consensus 35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~v-ligl~~qfvlmPlla~~~~~~~~-----l~~~l~~Gl~ll~~~ 108 (319)
T COG0385 35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLV-LIGLAAQFVLMPLLALLLAKLFP-----LPPELAVGLLLLGCC 108 (319)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHHHHHcC-----CCHHHHHhHHheeeC
Confidence 344445788999999999999999988765544322 23333344433333333333222 122344444443322
Q ss_pred HHHHHHH-HHHhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047130 213 FPSIACL-VSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIYHA--PLHSAYRNLGIMVVYLLAVVFVVRPAML 289 (815)
Q Consensus 213 ~~vv~~i-L~el~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~v~r~~~~ 289 (815)
+..+.+. ++- +.+.+.. ++++.+.++.+++.++.-+...+.-+++. +.....+.++..++.=.+.+.+.|+...
T Consensus 109 Pggv~S~~~t~--lAkGnVa-lsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~~~~ 185 (319)
T COG0385 109 PGGVASNAMTY--LAKGNVA-LSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLP 185 (319)
T ss_pred CCchhHHHHHH--HhcCcHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221 111 1233333 66677788888888776444333222211 3344556666555555566777788776
Q ss_pred HHHHHc
Q 047130 290 WVVKQT 295 (815)
Q Consensus 290 ~l~~r~ 295 (815)
...++.
T Consensus 186 ~~~~~~ 191 (319)
T COG0385 186 KWVERL 191 (319)
T ss_pred HHHHHH
Confidence 555553
No 60
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.01 E-value=0.14 Score=56.10 Aligned_cols=121 Identities=11% Similarity=0.056 Sum_probs=75.2
Q ss_pred HHHHHHHHHhC-----chhhHHHHHHHhhcCCCCCc--hhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHH
Q 047130 314 LGAGYISDLFG-----QHVYFGPFVFGLAVPAGPPL--GSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAK 386 (815)
Q Consensus 314 l~~~~i~e~~G-----~~~~lGafvaGl~~~~~~~~--~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~ 386 (815)
.+..++.++++ +....++++.|.++.+--+. ..++.++..+.+.++-+-+|.++.=|++.+..+.+.. ..
T Consensus 232 ~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~-lp-- 308 (404)
T COG0786 232 AVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLA-LP-- 308 (404)
T ss_pred HHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc-cc--
Confidence 34445666655 46788999999999885211 1124444445557888889988888999998887652 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhh-hhhHHHHHHhh
Q 047130 387 STAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMST-KGIVEISTYNI 437 (815)
Q Consensus 387 ~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~-kG~v~li~~~~ 437 (815)
.++++.+-..+.-+.+.+...|..+-+...+...+.-+.. -|...-+++++
T Consensus 309 l~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtAianM 360 (404)
T COG0786 309 LLVILAVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTAIANM 360 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHHHHhh
Confidence 2333333344556666777778888777666554443332 25555566655
No 61
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=96.93 E-value=0.46 Score=53.11 Aligned_cols=95 Identities=14% Similarity=0.093 Sum_probs=55.2
Q ss_pred chhhHHHHHHHhhcCCCCCc--hhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHH-HHHHHHHHHHH
Q 047130 325 QHVYFGPFVFGLAVPAGPPL--GSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAV-IVAVVVLAKVA 401 (815)
Q Consensus 325 ~~~~lGafvaGl~~~~~~~~--~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~-i~~~~~~~K~i 401 (815)
+....++++.|+++.+.-+. ..++..+.-+...++.+-+|.+..=+.+++..+.+... ..++ +++-.++.=+.
T Consensus 247 lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~----Plliil~~q~i~~~~f 322 (368)
T PF03616_consen 247 LPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYAL----PLLIILAVQTILMVLF 322 (368)
T ss_pred CchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 45678999999999874210 01122222233456666677777778899988886521 2222 23333334445
Q ss_pred HHHHhhhhcCCChHHHHHHHHHH
Q 047130 402 TTMIPPLYCKVPKRDAFALALIM 424 (815)
Q Consensus 402 ~~~l~~~~~~~~~~~~~~lgl~m 424 (815)
..++..|.++-++ |+..++...
T Consensus 323 ~~fv~fr~~gkdy-daavm~~G~ 344 (368)
T PF03616_consen 323 AYFVTFRVMGKDY-DAAVMSAGF 344 (368)
T ss_pred HHHHhhhhhCCCh-hHHHHhhhh
Confidence 5666677888776 666654443
No 62
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=96.65 E-value=0.1 Score=56.94 Aligned_cols=136 Identities=14% Similarity=0.105 Sum_probs=71.9
Q ss_pred HHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047130 330 GPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLY 409 (815)
Q Consensus 330 GafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~ 409 (815)
.+++.|..+.+- .+.+.+... ....+++|++-...|.++|+.++... ++ ...++.+..++......+...|+
T Consensus 178 lplliG~~lgnl---~~~l~~~~~-~Gi~~lLp~~~~~lG~~l~lq~i~~~-G~---~GilL~~~~~~~t~~~~~~~~Rl 249 (326)
T PRK05274 178 LPLLVGFILGNL---DPELRQFLG-KAVPVLIPFFAFALGNGIDLGTIITA-GL---SGILLGVAVVAVTGIPLYLADRL 249 (326)
T ss_pred HHHHHHHHHHhH---HHhhHHHhc-CCcEEEHHHHHHHHhcceeHhHHHhc-CC---cchhhhhhHhhccchhhHhHhhe
Confidence 678888888874 223333333 33466999999999999999888654 33 22333333344445545555577
Q ss_pred cCCChH---HHHHHHHHHhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 047130 410 CKVPKR---DAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSR 475 (815)
Q Consensus 410 ~~~~~~---~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~ly~p~~ 475 (815)
++.... -+...+-.-+.-|-.. ++...-..+-..++.-..+..++++++++.|.+..+++|+.+
T Consensus 250 ~~~~~g~~g~a~~ttaG~aic~pAA--vaa~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~~~k~~~ 316 (326)
T PRK05274 250 IGGGNGVAGAAAGSTAGNAVATPAA--VAAADPSFAPFAPAATAQVAAAVIVTAILAPILTAWWSKRVG 316 (326)
T ss_pred eecCCCcchHHHHHHHHHHHHHHHH--HHhhccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 753322 1222121111111112 111222222334444444555566777777888887775544
No 63
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=96.61 E-value=0.38 Score=53.74 Aligned_cols=327 Identities=14% Similarity=0.151 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhh---cccccccccccccccccCCCchhHHHHHHHHHHHHHHHH--
Q 047130 74 LELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLI---LGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFL-- 148 (815)
Q Consensus 74 ~ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGil---lGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~-- 148 (815)
++--+.++++++.+++++=+| +|-+=.|+=+|.+ ++|+.+-.. .++|++..+..+.+-+-.=.+.+|.
T Consensus 30 m~g~~a~~~v~G~~l~~IG~r--iPi~k~yiGGg~il~~f~ps~Lv~~-----~~ip~~~~~~v~~fm~~~~Fl~ffIa~ 102 (414)
T PF03390_consen 30 MIGGFAVMMVLGFLLGEIGDR--IPILKDYIGGGAILCIFVPSALVYF-----GLIPESVVEAVTNFMKGSNFLYFFIAA 102 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHhh--ChhhhccCChHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHhccCChHHHHHHH
Confidence 344455555556666665553 4444444444433 355543322 1334333333333322211112222
Q ss_pred --hh--cccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHH-----hhccHHHHHHH
Q 047130 149 --TG--VKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVH-----SLSRFPSIACL 219 (815)
Q Consensus 149 --~G--le~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~l-----s~Ts~~vv~~i 219 (815)
.| +.||.+.+.|...|-+..-+.+.+..++++.+++.+++... ....+.+++-. ..-+.|...-.
T Consensus 103 LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~------~~~i~~i~lPIMgGG~GaGavPLS~~Y 176 (414)
T PF03390_consen 103 LIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSF------KDAIFYIVLPIMGGGMGAGAVPLSQIY 176 (414)
T ss_pred HHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH------HHHHHHHHhhhcCCCccccHhHHHHHH
Confidence 23 48899999999888888888888888888887777776521 12222222211 11112211111
Q ss_pred HHHhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CC------C---h-------hHHHHHHHHHHHHHH
Q 047130 220 VSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIASIY-----HA------P---L-------HSAYRNLGIMVVYLL 278 (815)
Q Consensus 220 L~el~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~-----~~------~---~-------~~~~~~~~~~i~~~~ 278 (815)
=+-++.-.+++-..++.+.++.++++++.-+++.-+.... ++ + . ......+. .-+++.
T Consensus 177 a~~~g~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~~~~g-~Gllla 255 (414)
T PF03390_consen 177 AEALGQDAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDFSDMG-AGLLLA 255 (414)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccccccccccCCCCCHHHHH-HHHHHH
Confidence 1112333444555666777777777777666555443211 00 0 0 00011121 112233
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHH
Q 047130 279 AVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSG 358 (815)
Q Consensus 279 ~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~ 358 (815)
+.+|.+..++..++ ..+ .+.+.++..++. ..+ | ++|+ .-++=..+...+...
T Consensus 256 ~~~y~~G~ll~~~i-------~ih-~~a~mIi~~~i~-----K~~-----------~-lvP~---~~e~~a~~~~~f~~~ 307 (414)
T PF03390_consen 256 CSFYILGVLLSKLI-------GIH-AYAWMIILVAIV-----KAF-----------G-LVPE---SLEEGAKQWYKFFSK 307 (414)
T ss_pred HHHHHHHHHHHHhc-------CCc-HHHHHHHHHHHH-----HHh-----------C-cCCH---HHHHHHHHHHHHHHH
Confidence 33444444443333 122 122222211111 111 1 1222 222334455556566
Q ss_pred hhHHHHHHhhccc-CChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHH-HHHHHHHhhh-hhHHHHHH
Q 047130 359 LFIPLVVTSASMR-TNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDA-FALALIMSTK-GIVEISTY 435 (815)
Q Consensus 359 l~lPlFF~~~G~~-~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~-~~lgl~m~~k-G~v~li~~ 435 (815)
-+.+-..+-+|+. +|+.++....++ .-+++++..+++-.+++++..++.|+-+-|+ +.-|+.|+.+ |.-|+.+.
T Consensus 308 ~lt~~lLvgiGv~~~~l~~l~~a~t~---~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVL 384 (414)
T PF03390_consen 308 NLTWPLLVGIGVAYTDLNDLIAAFTP---QYVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVL 384 (414)
T ss_pred HHHHHHHHHHHhhhCcHHHHHHHhCH---HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchhe
Confidence 6666677778888 999988776555 3456666667788899999999999665555 5667677766 55567777
Q ss_pred hhcccccccc
Q 047130 436 NISRNIESLT 445 (815)
Q Consensus 436 ~~~~~~~~i~ 445 (815)
+.+....++.
T Consensus 385 sAa~RM~Lmp 394 (414)
T PF03390_consen 385 SAANRMELMP 394 (414)
T ss_pred ehhhhccccc
Confidence 7666666553
No 64
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.55 E-value=0.26 Score=53.43 Aligned_cols=81 Identities=22% Similarity=0.342 Sum_probs=57.1
Q ss_pred hhCCChhHHHHHhhhhcccccccccccccccccCCCchh-HHHHHHHHHHHHHHHHhhcccChhHHHhcchhhHHHHHHH
Q 047130 94 RFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLG-TLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLT 172 (815)
Q Consensus 94 rl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~-~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~ 172 (815)
...++..+--|+.|+++|+..++.-+.+. +..+ .-+.+-++|.+ +.|.++++..+.+.+.+.+.+....
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~------~Gi~~~~k~~Lr~gIV----LlG~~l~~~~i~~~G~~~~~~~~~~ 92 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFK------PGIKFSSKKLLRLGIV----LLGFRLSFSDILALGWKGLLIIIIV 92 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHH------hHHHHHHHHHHHHHHH----HHCccccHHHHHHhCccHHHHHHHH
Confidence 46788889999999999973344322211 1122 23466678877 6799999999999999888887777
Q ss_pred HHHHHHHHHHHH
Q 047130 173 LLIPFLLGAAAL 184 (815)
Q Consensus 173 ~~ip~~~~~~~~ 184 (815)
+...+.++..++
T Consensus 93 v~~~~~~~~~lg 104 (305)
T PF03601_consen 93 VILTFLLTYWLG 104 (305)
T ss_pred HHHHHHHHHHHH
Confidence 777776655555
No 65
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=96.48 E-value=1.3 Score=47.81 Aligned_cols=178 Identities=13% Similarity=0.200 Sum_probs=87.6
Q ss_pred hHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhcchhhHHHHHHHHHHHHHH
Q 047130 100 IASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLL 179 (815)
Q Consensus 100 iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~ 179 (815)
+.-.+++|+.+|-+.-+......+ -+...++.--.+|+++.|+=.=+++|.+++++..|+.-.+ +.+..+-+++
T Consensus 20 v~l~i~~Gi~lG~~~p~~~~~l~~-----~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L-~lsL~~Nwii 93 (342)
T COG0798 20 VFLAIAIGILLGVHFPGLAQLLGK-----LEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPL-ILSLFVNWII 93 (342)
T ss_pred HHHHHHHHHHHHhcccchhhhccc-----ceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHH-HHHHHHHHHH
Confidence 444566777777543331111000 0122334445678888888888899999998877664333 2233333333
Q ss_pred H----HHHHHHHHHhhccCcchHHHH-HHHHHHHhhccHHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047130 180 G----AAALEKMSRILGIGMEDKMKL-WVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIW 254 (815)
Q Consensus 180 ~----~~~~~~l~~~~~~~~~~~~~~-l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~lals~a~v~D~~~~~ll~v~~~ 254 (815)
+ +++++++.. +....... +.+|++=| ||-..+-. ++.+.+. ..++..-.+||++.+++++....
T Consensus 94 ~P~lm~~la~~fl~----~~pey~~GlILlglApC-~aMVivw~-----~La~Gd~-~~tlv~Va~n~l~qiv~y~~~~~ 162 (342)
T COG0798 94 GPLLMFALAWFFLP----DEPEYRAGLILLGLAPC-IAMVIVWS-----GLAKGDR-ELTLVLVAFNSLLQIVLYAPLGK 162 (342)
T ss_pred HHHHHHHHHHHHhC----CCHHHHHHHHHHHhhhh-HHHHHHHH-----hhccCcH-hhhhHHHHHHHHHHHHHHHHHHH
Confidence 2 333333332 11112222 22222222 22222222 3333333 45666677899999998865443
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047130 255 IASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVVKQT 295 (815)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~~r~ 295 (815)
..-+. .+....++.++..+...+.+-++.+.+.+++..|.
T Consensus 163 ~~l~v-~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~ 202 (342)
T COG0798 163 FFLGV-ISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKK 202 (342)
T ss_pred HHHhh-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 32111 12233455666555444444455555555555554
No 66
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=96.47 E-value=0.49 Score=51.42 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=59.0
Q ss_pred hhhhhH-HHhhHHHHHHhhccc-CChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHH-HHHHHHhhh
Q 047130 351 KLDPMV-SGLFIPLVVTSASMR-TNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAF-ALALIMSTK 427 (815)
Q Consensus 351 kl~~~~-~~l~lPlFF~~~G~~-~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~-~lgl~m~~k 427 (815)
++..|. ..+.-|+.+ -+|.. +|+..+.+..+| .-+++.+..+++-..+.++.+|+.++-+-|+. .-|+.|+.+
T Consensus 319 ~l~~F~sk~~t~~Lm~-giGv~ytdl~ev~~alt~---~~vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~ 394 (438)
T COG3493 319 QLSQFFSKNLTWPLMA-GIGVAYTDLNEVAAALTW---QNVIIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANM 394 (438)
T ss_pred HHHHHHHHhhHHHHHH-hhhhccccHHHHHHHhch---hHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCC
Confidence 444333 344455544 45665 898888776666 34455555567788899999999997655554 455999888
Q ss_pred h-hHHHHHHhhcccccccc
Q 047130 428 G-IVEISTYNISRNIESLT 445 (815)
Q Consensus 428 G-~v~li~~~~~~~~~~i~ 445 (815)
| .-|+.+++.+-..++++
T Consensus 395 GGtGDvaVLsAa~RM~Lmp 413 (438)
T COG3493 395 GGTGDVAVLSAADRMELMP 413 (438)
T ss_pred CCCCchHHhhhcchhcccc
Confidence 5 45667776666666554
No 67
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=96.15 E-value=0.062 Score=51.21 Aligned_cols=131 Identities=24% Similarity=0.232 Sum_probs=81.6
Q ss_pred cceEEEEec-CCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccc------c-------chhhhhHHHHHHHhcccCC
Q 047130 665 SFRVAMIFL-GGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMIS------T-------NWEKVLDSEVLKEVKPENN 730 (815)
Q Consensus 665 ~~~I~~~f~-gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~------~-------~~~~~~d~~~l~~~~~~~~ 730 (815)
.+++++.++ |.+..++|++.+...++..+..++++++..+...... . ...+...++.+++.+....
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALAE 84 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 568999999 9999999999999999999999998888754221100 0 0012222344544443222
Q ss_pred CCCCEEEEEEEecC--c--HHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEE
Q 047130 731 FNQRVKYVVEMVNE--G--QETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVL 806 (815)
Q Consensus 731 ~~~~v~y~e~~V~~--g--~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvL 806 (815)
..+... .+..+.. + +++....++. +.||+++|.+++ .++.+ --||-.-+-++.. +..+||
T Consensus 85 ~~~~~~-~~~~~~~g~~~~~~i~~~a~~~--~adliV~G~~g~------~~l~~----~llGsvs~~v~~~---~~~pVl 148 (154)
T COG0589 85 AAGVPV-VETEVVEGSPSAEEILELAEEE--DADLIVVGSRGR------SGLSR----LLLGSVAEKVLRH---APCPVL 148 (154)
T ss_pred HcCCCe-eEEEEecCCCcHHHHHHHHHHh--CCCEEEECCCCC------ccccc----eeeehhHHHHHhc---CCCCEE
Confidence 211111 1222222 2 4444455554 469999999865 44433 3577777778877 788999
Q ss_pred EEeee
Q 047130 807 VVQQQ 811 (815)
Q Consensus 807 vvqq~ 811 (815)
||...
T Consensus 149 vv~~~ 153 (154)
T COG0589 149 VVRSE 153 (154)
T ss_pred EEccC
Confidence 98753
No 68
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.03 E-value=0.18 Score=53.85 Aligned_cols=129 Identities=15% Similarity=0.158 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchh-HHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHH
Q 047130 312 LALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGS-ALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAV 390 (815)
Q Consensus 312 ~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~-~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~ 390 (815)
.....+.+++.++++..+|-.++|+++.... ++. .-.+.++.+ ..+-+.++....|+++|++.+..... ....
T Consensus 3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~~-lg~i~~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~~~~----~~~~ 76 (273)
T TIGR00932 3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPSG-LGLISNVEGVNHL-AEFGVILLMFLIGLELDLERLWKLRK----AAFG 76 (273)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCccc-ccCCCChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHH----HHHH
Confidence 4456678889999999999999999997531 110 111234444 45666677778899999998875522 2223
Q ss_pred HHHHHHHHH-HHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhH
Q 047130 391 IVAVVVLAK-VATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQM 448 (815)
Q Consensus 391 i~~~~~~~K-~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~ 448 (815)
+....++.- ++..+...++++.++.+++.+|..+++-. .-+.+.+..|.+..+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~~ 133 (273)
T TIGR00932 77 VGVLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTPF 133 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccChH
Confidence 333333333 34444556778999999999999877553 223444445555544333
No 69
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=95.86 E-value=2.4 Score=45.68 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhcccChhHHHhcchh--hHHHHHH-HH-HHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHH-hhcc
Q 047130 138 ATFGYILFQFLTGVKMDVSMIQKTGKK--SLFTGLL-TL-LIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVH-SLSR 212 (815)
Q Consensus 138 a~lgli~~lF~~Gle~d~~~l~~~~k~--~~~i~~~-~~-~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~l-s~Ts 212 (815)
.-..+.+.||..|+.++.+++++..|+ ...++.. .+ +.|.+. +.++.+++. + .....|..+ +.+.
T Consensus 10 ~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla-~~l~~~~~l----~-----~~~~~glvL~~~~P 79 (286)
T TIGR00841 10 LLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTG-FLLAKVFKL----P-----PELAVGVLIVGCCP 79 (286)
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHhCC----C-----HHHHHHHHheeeCC
Confidence 334488899999999999999887763 3333333 33 445443 444443321 1 122233332 2222
Q ss_pred HHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHH
Q 047130 213 FPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTRS 251 (815)
Q Consensus 213 ~~vv~~iL~el~ll~s~~g~lals~a~v~D~~~~~ll~v 251 (815)
.++.+.++.++- +.+ ..++.+...++-+.+.+.+-+
T Consensus 80 ~~~~s~v~t~~~--~gn-~~la~~~~~~stlls~vt~Pl 115 (286)
T TIGR00841 80 GGTASNVFTYLL--KGD-MALSISMTTCSTLLALGMMPL 115 (286)
T ss_pred CchHHHHHHHHh--CCC-HhhhhHHHHHHHHHHHHHHHH
Confidence 233334444432 222 345555556666666655533
No 70
>PRK10490 sensor protein KdpD; Provisional
Probab=95.73 E-value=0.059 Score=67.46 Aligned_cols=125 Identities=7% Similarity=-0.011 Sum_probs=87.0
Q ss_pred CccceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHH
Q 047130 492 SGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEE 571 (815)
Q Consensus 492 ~~elrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 571 (815)
...-|||||++.++++..+++-+..++ .+.++..+++|+..-..+. ......+++.+.++ +++
T Consensus 248 ~~~eriLV~v~~~~~~~~lIr~~~rlA--~~~~a~~~~l~V~~~~~~~--------------~~~~~~~~l~~~~~-lA~ 310 (895)
T PRK10490 248 HTRDAILLCIGHNTGSEKLVRTAARLA--ARLGSVWHAVYVETPRLHR--------------LPEKKRRAILSALR-LAQ 310 (895)
T ss_pred CcCCeEEEEECCCcchHHHHHHHHHHH--HhcCCCEEEEEEecCCcCc--------------CCHHHHHHHHHHHH-HHH
Confidence 356789999999999999999999999 4478899999986421110 01112244555554 555
Q ss_pred hcCcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCC-CceEEEe
Q 047130 572 KNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAP-CSVGILI 647 (815)
Q Consensus 572 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~Ap-CsVgIlv 647 (815)
+.++ ++... ...++.+.|.++|++++++.||||-.++.++ .. .+++.+++++.+| -+|-|+-
T Consensus 311 ~lGa--~~~~~----~~~dva~~i~~~A~~~~vt~IViG~s~~~~~--~~------~~s~~~~l~r~~~~idi~iv~ 373 (895)
T PRK10490 311 ELGA--ETATL----SDPAEEKAVLRYAREHNLGKIIIGRRASRRW--WR------RESFADRLARLGPDLDLVIVA 373 (895)
T ss_pred HcCC--EEEEE----eCCCHHHHHHHHHHHhCCCEEEECCCCCCCC--cc------CCCHHHHHHHhCCCCCEEEEe
Confidence 5332 23222 2358999999999999999999998776543 11 2367789999996 6777764
No 71
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=95.67 E-value=3.7 Score=44.88 Aligned_cols=150 Identities=15% Similarity=0.195 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHhhcccChhHHHhcchhhHHH---HHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhc
Q 047130 135 DLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFT---GLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLS 211 (815)
Q Consensus 135 ~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i---~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~T 211 (815)
+....+++..++|..|+.++.+++++..++.-.. -...+++.=++++++...+....+ ..+..|......
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~~-------~~l~~Gl~~~~~ 102 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFLP-------PELALGLLILAC 102 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccCC-------HHHHHHHHHHhh
Confidence 4667788888889999999999998765544222 222222222234444444432111 123333333222
Q ss_pred cHHHHH-H-HHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCC--ChhHHHHHHHHHHHHHHHHHHHHHH
Q 047130 212 RFPSIA-C-LVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWIAS-IYHA--PLHSAYRNLGIMVVYLLAVVFVVRP 286 (815)
Q Consensus 212 s~~vv~-~-iL~el~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~~~-~~~~--~~~~~~~~~~~~i~~~~~~~~v~r~ 286 (815)
-++.+. . .++.. .+.+. ..++..+.++.++++++.-+...+.. +++. +....+..++..++.=.+++-+.|+
T Consensus 103 lPtTv~S~v~~T~~--AgGN~-a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~vllP~~~Gq~~r~ 179 (313)
T PF13593_consen 103 LPTTVSSSVVLTRL--AGGNV-ALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTVLLPLVLGQLLRR 179 (313)
T ss_pred CCchhhHHHHHHHH--cCCCH-HHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222111 1 12221 22222 46677788888888877744333322 2211 2223333444443333444555565
Q ss_pred HHHHHHHH
Q 047130 287 AMLWVVKQ 294 (815)
Q Consensus 287 ~~~~l~~r 294 (815)
...+..+|
T Consensus 180 ~~~~~~~~ 187 (313)
T PF13593_consen 180 WVPKWVAR 187 (313)
T ss_pred HHHHHHHH
Confidence 55444333
No 72
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=95.67 E-value=4.3 Score=44.48 Aligned_cols=157 Identities=11% Similarity=0.125 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHhCch--hhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchh
Q 047130 306 IHNIIMLALGAGYISDLFGQH--VYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDN 383 (815)
Q Consensus 306 ~~~~l~~~l~~~~i~e~~G~~--~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~ 383 (815)
....+..+.+.+++.+.+++. .++||++.+.++.......-.+-+.+. .+..-+.=..+|.+++...+.....+
T Consensus 157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~----~~aqv~iG~~iG~~f~~~~l~~~~~~ 232 (318)
T PF05145_consen 157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLV----NAAQVLIGASIGSRFTRETLRELRRL 232 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHHHHHccccHHHHHHHHHH
Confidence 344555666777888888774 588888888777654211111112222 22222344567999998777655433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHH
Q 047130 384 LAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIII 463 (815)
Q Consensus 384 ~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~ 463 (815)
.. ..++..++.+..-.+.+++..+++++|+.+++. .+.|-|.-|+.+.....+...---..+.++= .+....+.
T Consensus 233 ~~-~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l~~d~~~V~~~q~~R--l~~v~~~~ 306 (318)
T PF05145_consen 233 LP-PALLSTLLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALALGADVAFVAAHQVVR--LLFVLLLA 306 (318)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHcCCChHHHHHHHHHH--HHHHHHHH
Confidence 22 344455555666788888899999999988754 3689999998876665554321111222221 12223446
Q ss_pred HHHHHhhhc
Q 047130 464 PILVKFLYD 472 (815)
Q Consensus 464 ~~lv~~ly~ 472 (815)
|++.+++.|
T Consensus 307 p~~~r~~~r 315 (318)
T PF05145_consen 307 PFIARWLRR 315 (318)
T ss_pred HHHHHHHHH
Confidence 788887664
No 73
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=95.65 E-value=4.5 Score=44.55 Aligned_cols=100 Identities=15% Similarity=0.098 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhcccChhHHHhcchhhHHHH---HHHHH-HHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHH
Q 047130 139 TFGYILFQFLTGVKMDVSMIQKTGKKSLFTG---LLTLL-IPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFP 214 (815)
Q Consensus 139 ~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~---~~~~~-ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~ 214 (815)
.+++.++||-.|++++++++++..|+...+. +.+++ .|+ +++.++..+... ...+.+|..+-...+.
T Consensus 46 ~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Pl-la~~l~~l~~~~--------~p~l~~GliLv~~~Pg 116 (328)
T TIGR00832 46 AIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPF-LMFLLAWLFLRD--------LFEYIAGLILLGLARC 116 (328)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHH-HHHHHHHHHcCC--------CHHHHHHHHHHHhcch
Confidence 3466689999999999999988766644332 22222 333 344444433221 1124455544332222
Q ss_pred -HHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHH
Q 047130 215 -SIACLVSDLRIINSELGRLGLSCALVSEMIGLILTR 250 (815)
Q Consensus 215 -vv~~iL~el~ll~s~~g~lals~a~v~D~~~~~ll~ 250 (815)
+.+.+++.+ .+.+.. ++++...++.+++.+++-
T Consensus 117 g~~S~v~T~l--AkGnva-lsv~lt~~stLl~~~~~P 150 (328)
T TIGR00832 117 IAMVFVWNQL--AKGDPE-YTLVLVAVNSLFQVFLYA 150 (328)
T ss_pred HHHHHHHHHH--cCCCHH-HHHHHHHHHHHHHHHHHH
Confidence 233334433 344443 556666777777766653
No 74
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.62 E-value=0.32 Score=57.74 Aligned_cols=131 Identities=10% Similarity=0.067 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCC-CchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHH
Q 047130 308 NIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGP-PLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAK 386 (815)
Q Consensus 308 ~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~-~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~ 386 (815)
.++..+++++.++..+|++.++|=.++|+++.... ..-+. .+.++.+ ..+-+-++....|+++|++.+.....
T Consensus 13 ~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~~~---- 86 (558)
T PRK10669 13 GGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPEL-AELGVILLMFGVGLHFSLKDLMAVKS---- 86 (558)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHHhh----
Confidence 34556666778888889999999999999986542 11111 1223333 45556666777899999988754321
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccch
Q 047130 387 STAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTD 446 (815)
Q Consensus 387 ~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~ 446 (815)
......+..++.=++..+...+++++++.+++.+|..++.-.. .+++....+.|.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s 144 (558)
T PRK10669 87 IAIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDS 144 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccC
Confidence 1111112122222333444556778999999999987776333 344455556665544
No 75
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.54 E-value=0.43 Score=57.25 Aligned_cols=108 Identities=12% Similarity=0.111 Sum_probs=64.8
Q ss_pred HHHHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhcchh
Q 047130 85 THACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKK 164 (815)
Q Consensus 85 ~~~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~ 164 (815)
.....++...+|++..+|-.++|++++.+-+.. +-...++.+..+-+.+|...+|+++|+..+...+..
T Consensus 228 v~~~a~la~~~Gls~~lGAFlAGl~l~~~~~~~-----------~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~ 296 (621)
T PRK03562 228 VFGFGLLMEEVGLSMALGAFLAGVLLASSEYRH-----------ALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLR 296 (621)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHhcCCccHH-----------HHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Confidence 334556778889999999999999988532211 123456666777778888889999999988765443
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhh
Q 047130 165 SLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSL 210 (815)
Q Consensus 165 ~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~ 210 (815)
.+.+.+..++.=++.+++.+.+++. ++..++.+|..++.
T Consensus 297 il~~~~~~~~~K~~~~~~~~~~~g~-------~~~~a~~~gl~L~~ 335 (621)
T PRK03562 297 ILILLLGFLAIKIAMLWLLARPLGV-------PRKQRRWFAVLLGQ 335 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-------CHhHHHHHHHHHhc
Confidence 3222222222222222333333221 35667777776664
No 76
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.53 E-value=0.36 Score=52.39 Aligned_cols=163 Identities=16% Similarity=0.132 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHH----HhCchhhHHHHHHHhhcCC-CCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchh
Q 047130 309 IIMLALGAGYISD----LFGQHVYFGPFVFGLAVPA-GPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDN 383 (815)
Q Consensus 309 ~l~~~l~~~~i~e----~~G~~~~lGafvaGl~~~~-~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~ 383 (815)
.+++..+..++++ ..++++.+=|.+.|+++.| .....+....-++.. ...++.+=.+..|.++++.++.+. ++
T Consensus 6 ~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i~~~-G~ 83 (305)
T PF03601_consen 6 CFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDILAL-GW 83 (305)
T ss_pred HHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHHHHh-Cc
Confidence 3444444444544 3677888889999999998 544445555444433 467888888999999999988765 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchh---HHHHHHHHHHHH
Q 047130 384 LAKSTAVIVAVVVLAKVATTMIPP-LYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQ---MFSFLTVEILVT 459 (815)
Q Consensus 384 ~~~~~~~i~~~~~~~K~i~~~l~~-~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~---~~~~lv~~~ll~ 459 (815)
...++.++.+..=+..++..+ +.+|++++.+..++...+.=|.-+++...-..+.+ +++ ..+.+.+.-++.
T Consensus 84 ---~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~--~~~~a~ava~V~lfg~va 158 (305)
T PF03601_consen 84 ---KGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAK--EEDVAYAVATVFLFGTVA 158 (305)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCC--CCceeeeehHHHHHHHHH
Confidence 233333334444444444444 99999999999999988877877766555444443 122 122333334444
Q ss_pred HHHHHHHHHhhhccccccc
Q 047130 460 AIIIPILVKFLYDPSRKYA 478 (815)
Q Consensus 460 t~i~~~lv~~ly~p~~~~~ 478 (815)
.++-|.+.+++.-+...+-
T Consensus 159 m~~~P~l~~~l~l~~~~~G 177 (305)
T PF03601_consen 159 MFLYPLLGHALGLSPQQFG 177 (305)
T ss_pred HHHHHHHHHHhCCCHHHHH
Confidence 5556777776665544443
No 77
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=95.48 E-value=0.038 Score=47.83 Aligned_cols=50 Identities=16% Similarity=0.065 Sum_probs=38.8
Q ss_pred ChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceE
Q 047130 590 LMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVG 644 (815)
Q Consensus 590 ~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVg 644 (815)
.+++.+.+.|++.++|.|++|.|+....+..+.+. +...++.+.++|||.
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~-----~~~~~~~~~~~~~vl 84 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRLGAS-----ANVLVVIKGAGIPVL 84 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCch-----hhhhhcccccCCcee
Confidence 78889999999999999999999886655444330 233488999999974
No 78
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.48 E-value=0.49 Score=56.59 Aligned_cols=107 Identities=10% Similarity=0.062 Sum_probs=64.6
Q ss_pred HHHHHHhhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhcchhhH
Q 047130 87 ACHFVLKRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSL 166 (815)
Q Consensus 87 ~~~~llkrl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~ 166 (815)
...++.+.+|+..++|-.++|++++.+-+.. +-...++.+..+-+.+|...+|+++|+..+...+...+
T Consensus 227 ~~a~l~~~~Gls~~LGAFlaGl~l~~s~~~~-----------~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il 295 (601)
T PRK03659 227 GSALFMDALGLSMALGTFIAGVLLAESEYRH-----------ELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVL 295 (601)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHhcCCchHH-----------HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHH
Confidence 4456678889999999999999998642111 12345666777888888899999999998877654333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhc
Q 047130 167 FTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLS 211 (815)
Q Consensus 167 ~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~T 211 (815)
.+.+..+++=++.+++.+.+++ .++..++.+|..++.-
T Consensus 296 ~~~~~~l~~K~~~~~~~~~~~g-------~~~~~al~~g~~L~~~ 333 (601)
T PRK03659 296 ISVVVLVAVKGLVLYLLARLYG-------LRSSERMQFAGVLSQG 333 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHhcc
Confidence 2222222222222222222222 1355666666665543
No 79
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=95.47 E-value=0.29 Score=48.29 Aligned_cols=114 Identities=19% Similarity=0.326 Sum_probs=76.9
Q ss_pred hhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhH---HHhcchhhHHHH
Q 047130 93 KRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSM---IQKTGKKSLFTG 169 (815)
Q Consensus 93 krl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~---l~~~~k~~~~i~ 169 (815)
+++++-...+-+++|+++|- +++.... + -.....+.+.++|+.+|++.+|++--++. +++.+.+...++
T Consensus 19 ~~~~LG~a~G~L~vgL~~G~--~~~~~~~----~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~ 90 (169)
T PF06826_consen 19 GGFSLGAAGGVLFVGLILGA--LGRTGPI----F--LPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLG 90 (169)
T ss_pred cceeccccHHHHHHHHHHHH--hhhccCC----C--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55666677788899998884 2221110 0 13456678999999999999999988765 566677777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHH-HHHhhccHHHHHHHHHH
Q 047130 170 LLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVT-VVHSLSRFPSIACLVSD 222 (815)
Q Consensus 170 ~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig-~~ls~Ts~~vv~~iL~e 222 (815)
+.-.++|.++++.+++++.+. ......| .+-+.|++|.+....+.
T Consensus 91 ~~i~~~~~~~~~~~~~~~~~l--------~~~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 91 VIITLVPLLIALVIGRYLFKL--------NPGIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHcCC--------CHHHHHHHHHccccCcHHHHHHHHh
Confidence 877788888777777644331 1223333 34477888888776554
No 80
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=95.42 E-value=6.1 Score=44.60 Aligned_cols=92 Identities=15% Similarity=0.119 Sum_probs=57.3
Q ss_pred CchhhHHHHHHHhhcCCCCCch--hHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHH-H
Q 047130 324 GQHVYFGPFVFGLAVPAGPPLG--SALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAK-V 400 (815)
Q Consensus 324 G~~~~lGafvaGl~~~~~~~~~--~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K-~ 400 (815)
.+....+|++.|+++.+--+.. .++.++.-+...++.+-+|.+..=|.++++.+.+. +. .+.++++..++.- +
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~--a~--Plliil~~q~i~~~l 319 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADL--AG--PIALILLVQVMFMAL 319 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH--HH--HHHHHHHHHHHHHHH
Confidence 3667889999999998742111 12333344445677888888888899999998865 22 2334444433333 3
Q ss_pred HHHHHhhhhcCCChHHHHHH
Q 047130 401 ATTMIPPLYCKVPKRDAFAL 420 (815)
Q Consensus 401 i~~~l~~~~~~~~~~~~~~l 420 (815)
...++..+..+-+ -|+..+
T Consensus 320 ~~~fv~fr~mg~~-ydaaV~ 338 (398)
T TIGR00210 320 YAIFVTFRLMGKD-YDAAVL 338 (398)
T ss_pred HHHHHhHHhccch-HHHHHH
Confidence 4455666667666 666553
No 81
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.37 E-value=0.21 Score=53.99 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=85.9
Q ss_pred HHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHH
Q 047130 318 YISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVL 397 (815)
Q Consensus 318 ~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~ 397 (815)
...+..|.++..=|.+.|+++...++.+.+...-++.. ...++.+=.+..|++++++++.+. ++ ..+.+....+.
T Consensus 30 ~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs-~k~LLr~gIvLlG~~ltl~~i~~~-G~---~~v~~~~~~l~ 104 (334)
T COG2855 30 FFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFS-SKKLLRLGIVLLGFRLTLSDIADV-GG---SGVLIIAITLS 104 (334)
T ss_pred HHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhh-HHHHHHHHHHHHcceeeHHHHHHc-Cc---cHHHHHHHHHH
Confidence 34455667788899999999997655555555545443 677888888899999999998865 43 34555666666
Q ss_pred HHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhh
Q 047130 398 AKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNI 437 (815)
Q Consensus 398 ~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~ 437 (815)
.-++.+++..+++|+|++.+..+|..-+.=|.-++....-
T Consensus 105 ~t~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~p 144 (334)
T COG2855 105 STFLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAP 144 (334)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCC
Confidence 7788888888899999999999998877777776655443
No 82
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.18 E-value=0.68 Score=52.41 Aligned_cols=138 Identities=12% Similarity=0.137 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCC-CC---CchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhccc
Q 047130 305 HIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPA-GP---PLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLL 380 (815)
Q Consensus 305 ~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~-~~---~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~ 380 (815)
.+..++..+...+.+.+.+|+++++|-.++|+++.+ +. ...++..+-+.++ =.-++...+|+.+|+..+...
T Consensus 10 ~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~lael----Gvi~LlF~~GLE~~~~~l~~~ 85 (397)
T COG0475 10 QLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAEL----GVVFLLFLIGLEFDLERLKKV 85 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHH----hHHHHHHHHHHCcCHHHHHHh
Confidence 345566667777899999999999999999999997 21 1223333334444 333445567999999988765
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH--HHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhHHHHH
Q 047130 381 DDNLAKSTAVIVAVVVLAKVATT--MIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFL 452 (815)
Q Consensus 381 ~~~~~~~~~~i~~~~~~~K~i~~--~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~~~~l 452 (815)
... .......+.+..=++.. +... .++.++.+++.+|..+..-..- +.+.+..|.|..+.+.-...
T Consensus 86 ~~~---~~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~~--i~~~iL~e~~~~~~~~g~~~ 153 (397)
T COG0475 86 GRS---VGLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSSTA--IVLKILMELGLLKTREGQLI 153 (397)
T ss_pred chh---hhhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHHH--HHHHHHHHhccccchHHHHH
Confidence 322 12222222222222222 2222 5899999999999876544221 23344445555444443333
No 83
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=94.96 E-value=1.2 Score=44.88 Aligned_cols=105 Identities=13% Similarity=0.169 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhcccChhHHHhcchhhHHHH---HHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhh-ccHHH
Q 047130 140 FGYILFQFLTGVKMDVSMIQKTGKKSLFTG---LLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSL-SRFPS 215 (815)
Q Consensus 140 lgli~~lF~~Gle~d~~~l~~~~k~~~~i~---~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~-Ts~~v 215 (815)
+.+.+.||..|+++|++++++..|+...+. +.++++.=.+++++++.+... ......|..+.. +.-+.
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~--------~~~~~~Gl~l~~~~P~~~ 73 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPL--------SPALALGLLLVAACPGGP 73 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT----------HHHHHHHHHHHHS-B-T
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHhcCCcHH
Confidence 457889999999999999998877654432 222333222334444222211 112223332211 11122
Q ss_pred HHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047130 216 IACLVSDLRIINSELGRLGLSCALVSEMIGLILTRSAIWI 255 (815)
Q Consensus 216 v~~iL~el~ll~s~~g~lals~a~v~D~~~~~ll~v~~~~ 255 (815)
.+...+++ .+.+.. ++++...++.+.+.+++-+...+
T Consensus 74 ~s~~~t~l--~~Gd~~-ls~~lt~istll~~~~~P~~~~l 110 (187)
T PF01758_consen 74 ASNVFTYL--AGGDVA-LSVSLTLISTLLAPFLMPLLLYL 110 (187)
T ss_dssp HHHHHHHH--TT--HH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--hCCCcc-cccceeeHHHHHHHHHHHHHHHH
Confidence 33333333 233333 66666777777777666444443
No 84
>PRK03818 putative transporter; Validated
Probab=94.87 E-value=0.52 Score=55.56 Aligned_cols=108 Identities=18% Similarity=0.317 Sum_probs=68.4
Q ss_pred hHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHH---HhcchhhHHHHHHHHHHH
Q 047130 100 IASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMI---QKTGKKSLFTGLLTLLIP 176 (815)
Q Consensus 100 iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l---~~~~k~~~~i~~~~~~ip 176 (815)
+.|-+++|+++|-. +. .+ ..- -.......+.++|+.+|+|.+|++.-+..+ |+.+.+-..+++.-.+++
T Consensus 33 ~~g~L~~gl~~G~~--~~--~~-~~~---~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~ 104 (552)
T PRK03818 33 IGGVLFGGIIVGHF--VS--QF-GLT---LDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILG 104 (552)
T ss_pred cHHHHHHHHHHhcc--cc--cc-Ccc---cChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 47888888888842 11 11 000 124566779999999999999999998764 555666667777777777
Q ss_pred HHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHh
Q 047130 177 FLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDL 223 (815)
Q Consensus 177 ~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el 223 (815)
.++++++.++++. + .....=..+-+.|++|.+.......
T Consensus 105 ~~~~~~~~~~~~~-------~-~~~~~G~~aGa~T~tp~l~aa~~~~ 143 (552)
T PRK03818 105 GLVTAILHKLFGI-------P-LPVMLGIFSGAVTNTPALGAGQQIL 143 (552)
T ss_pred HHHHHHHHHHhCC-------C-HHHHHHHhhccccccHHHHHHHHHH
Confidence 7766655443332 1 1122233345778888887766433
No 85
>PRK05326 potassium/proton antiporter; Reviewed
Probab=94.83 E-value=0.44 Score=56.57 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchh--HHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHH
Q 047130 308 NIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGS--ALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLA 385 (815)
Q Consensus 308 ~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~--~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~ 385 (815)
+++++..+++.++..+|++.+++-.++|+++.....-.- .-.+-.+ ....+.+++.....|+++|+..+... +.
T Consensus 13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~-~i~~l~L~~iLF~~Gl~~~~~~l~~~--~~- 88 (562)
T PRK05326 13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAY-LVGNLALAVILFDGGLRTRWSSFRPA--LG- 88 (562)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHH-HHHHHHHHHHHHcCccCCCHHHHHHH--HH-
Confidence 344455556677778888889999999988876421100 1112233 34678888888899999999988754 21
Q ss_pred HHHHHHHHHHHHHHH-HHHHHhhhhcCCChHHHHHHHHHHhhhhhH
Q 047130 386 KSTAVIVAVVVLAKV-ATTMIPPLYCKVPKRDAFALALIMSTKGIV 430 (815)
Q Consensus 386 ~~~~~i~~~~~~~K~-i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v 430 (815)
....+....++.-. +.++...+++++++.+++.+|.++++-...
T Consensus 89 -~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a 133 (562)
T PRK05326 89 -PALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAA 133 (562)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchH
Confidence 23333333333323 334455567799999999999877665443
No 86
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=94.63 E-value=0.28 Score=49.38 Aligned_cols=126 Identities=22% Similarity=0.363 Sum_probs=79.8
Q ss_pred HHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccCh-----hHHHhcchhhHHHHHHHHHH
Q 047130 101 ASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDV-----SMIQKTGKKSLFTGLLTLLI 175 (815)
Q Consensus 101 v~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~-----~~l~~~~k~~~~i~~~~~~i 175 (815)
++.+++|+++|-.... + ....+...+..+.+++|.+|+++-- +.+++.+++++.+.+...+-
T Consensus 2 l~~li~Gi~lG~~~~~--~-----------~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlG 68 (191)
T PF03956_consen 2 LIALILGILLGYFLRP--P-----------FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILG 68 (191)
T ss_pred eeeHHHHHHHHHHhcc--c-----------ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3456788888743211 1 1122677788999999999998853 45777889999999998888
Q ss_pred HHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHH
Q 047130 176 PFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILTR 250 (815)
Q Consensus 176 p~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~lals~a~v~D~~~~~ll~ 250 (815)
+++.+.+++.++.. +..+++.++.-+.= +.....+++|++ +-++|.++.=+=++.+++++++.-
T Consensus 69 Sllgg~l~~~ll~~-------~~~~~lav~sG~Gw--YSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P 132 (191)
T PF03956_consen 69 SLLGGLLASLLLGL-------SLKESLAVASGFGW--YSLSGVLITQLY--GPELGTIAFLSNLFREILAIILIP 132 (191)
T ss_pred HHHHHHHHHHHhcC-------CHHHHHHHHccCcH--HHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777743 34455554443311 111122334432 557777776666666666665543
No 87
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=94.12 E-value=7.3 Score=42.80 Aligned_cols=119 Identities=14% Similarity=0.089 Sum_probs=80.0
Q ss_pred CchhhHHHHHHHhhcCCCCCchhHHHHhhhhh---HHHhhHHHHHHhhccc-CChhhhcccchhHHHHHHHHHHHHHHHH
Q 047130 324 GQHVYFGPFVFGLAVPAGPPLGSALVEKLDPM---VSGLFIPLVVTSASMR-TNLSDIKLLDDNLAKSTAVIVAVVVLAK 399 (815)
Q Consensus 324 G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~---~~~l~lPlFF~~~G~~-~dl~~l~~~~~~~~~~~~~i~~~~~~~K 399 (815)
++|+..-..++|.++....-..++++++...+ ...-+.+..++-+|+. +|++.+.+..++ ..+++++..+++=
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~---~~vviiv~~Vlg~ 279 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSW---QFVVICLSVVVAM 279 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhch---hHhhhHHHHHHHH
Confidence 67888888889988887655566666665544 2333344444445766 788887765444 3556666677788
Q ss_pred HHHHHHhhhhcCCChHHH-HHHHHHHhhh-hhHHHHHHhhcccccccc
Q 047130 400 VATTMIPPLYCKVPKRDA-FALALIMSTK-GIVEISTYNISRNIESLT 445 (815)
Q Consensus 400 ~i~~~l~~~~~~~~~~~~-~~lgl~m~~k-G~v~li~~~~~~~~~~i~ 445 (815)
.+++++.+++.|+-+-|+ +.-|+.|+.+ |.-|+.+.+.+...+++.
T Consensus 280 ii~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 280 ILGGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred HHHHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 889999999999655555 5557788777 455677776666666553
No 88
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.00 E-value=1.6 Score=47.87 Aligned_cols=155 Identities=10% Similarity=0.127 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHH-----hCchhhHHHHHHHhhcCCCC--CchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccc
Q 047130 309 IIMLALGAGYISDL-----FGQHVYFGPFVFGLAVPAGP--PLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLD 381 (815)
Q Consensus 309 ~l~~~l~~~~i~e~-----~G~~~~lGafvaGl~~~~~~--~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~ 381 (815)
.+.+++.+.++++. .++++.+=|.+.|+++.|.. +..+....-+ .+....++-+=.+..|.++++.++...
T Consensus 10 ~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi-~f~~k~lLr~gIVLlG~~l~~~~i~~~- 87 (335)
T TIGR00698 10 MALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGV-LFAKPFLLRIGITLYGFRLTFPYIADV- 87 (335)
T ss_pred HHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchH-HHHHHHHHHHHHHHHCccccHHHHHHh-
Confidence 33444444455443 47788888999999998842 1222222222 234556677777888999999988754
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-HHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhH---HHHHHHHHH
Q 047130 382 DNLAKSTAVIVAVVVLAKVAT-TMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQM---FSFLTVEIL 457 (815)
Q Consensus 382 ~~~~~~~~~i~~~~~~~K~i~-~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~---~~~lv~~~l 457 (815)
++ ..+.+.++.+..-+.. .++..+.+|++++.+..++...+.=|.-+++...-..+.+ +++. .+.+++.-.
T Consensus 88 G~---~~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~--~~~~a~ava~V~lfgt 162 (335)
T TIGR00698 88 GP---NEIVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIKAE--KEKVSVAIAIVVIFGT 162 (335)
T ss_pred hH---HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccCCC--ccceeeeehHHHHHHH
Confidence 43 2334334334444444 4455589999999999999988877877766554433332 1221 222333333
Q ss_pred HHHHHHHHHHHhh
Q 047130 458 VTAIIIPILVKFL 470 (815)
Q Consensus 458 l~t~i~~~lv~~l 470 (815)
+..++-|++.+++
T Consensus 163 ~am~l~P~l~~~l 175 (335)
T TIGR00698 163 TGIFLYPSIYHYA 175 (335)
T ss_pred HHHHHHHHHHHHH
Confidence 4445556666544
No 89
>TIGR00930 2a30 K-Cl cotransporter.
Probab=93.34 E-value=30 Score=43.82 Aligned_cols=133 Identities=14% Similarity=0.064 Sum_probs=78.5
Q ss_pred CCCccceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHH
Q 047130 490 KASGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLF 569 (815)
Q Consensus 490 ~~~~elrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 569 (815)
..+..-++|+.+.+|+..+.+++++..+.+. .+ -..+.|+++-+.. .. ..+.++..++.+.+
T Consensus 571 ~knwrPqiLvl~~~p~~~~~Ll~f~~~l~~~--~g-l~i~~~v~~~~~~-------~~--------~~~~~~~~~~~~~~ 632 (953)
T TIGR00930 571 VKNWRPQCLVLTGPPVCRPALLDFASQFTKG--KG-LMICGSVIQGPRL-------EC--------VKEAQAAEAKIQTW 632 (953)
T ss_pred ccccCCeEEEEeCCCcCcHHHHHHHHHhccC--Cc-EEEEEEEecCchh-------hh--------HHHHHHHHHHHHHH
Confidence 3566789999999999999999999999832 33 4456688773211 00 00112223333333
Q ss_pred HHhcCcceEEEEEEEecCCCChhHHHHHHHHhc-----CCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceE
Q 047130 570 EEKNWGTACVYPFTAISPPKLMHEDVCMLALDK-----LASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVG 644 (815)
Q Consensus 570 ~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~-----~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVg 644 (815)
-++ .+ ++.|..+-.-.+..+++..+.+-- +.+.++|||...|..++.. +-.++-++-+.. -.+...|.
T Consensus 633 ~~~--~~--~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~--~~~~y~~~i~~a-~~~~~~v~ 705 (953)
T TIGR00930 633 LEK--NK--VKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEPR--AWETYIGIIHDA-FDAHLAVV 705 (953)
T ss_pred HHH--hC--CCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccch--hHHHHHHHHHHH-HHcCCcEE
Confidence 332 12 222332223358999999988775 6899999999887654311 112233333333 24556666
Q ss_pred EEe
Q 047130 645 ILI 647 (815)
Q Consensus 645 Ilv 647 (815)
|+.
T Consensus 706 i~r 708 (953)
T TIGR00930 706 VVR 708 (953)
T ss_pred EEc
Confidence 664
No 90
>PRK10490 sensor protein KdpD; Provisional
Probab=93.25 E-value=0.2 Score=62.84 Aligned_cols=98 Identities=9% Similarity=0.065 Sum_probs=65.7
Q ss_pred cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccccchhhhhHHHHHHHhcccCCCCCCEEEEEEEecC
Q 047130 665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNE 744 (815)
Q Consensus 665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~V~~ 744 (815)
..+|+|...|+|..+..+..|.|||+..++.++++||.+++....+.+.++.+. +.++ +..+.. .+.+......|
T Consensus 250 ~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~-~~~~-lA~~lG-a~~~~~~~~dv-- 324 (895)
T PRK10490 250 RDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAIL-SALR-LAQELG-AETATLSDPAE-- 324 (895)
T ss_pred CCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHH-HHHH-HHHHcC-CEEEEEeCCCH--
Confidence 468999999999999999999999999999999999987633222222233333 2222 322222 22222222223
Q ss_pred cHHHHHHHHhhCCCccEEEEcccCC
Q 047130 745 GQETLAKIQSVVPKYDLVIVGRRDN 769 (815)
Q Consensus 745 g~~~~~~i~~~~~~~DLiivG~~~~ 769 (815)
.+++++++++.+. +.||||++++
T Consensus 325 a~~i~~~A~~~~v--t~IViG~s~~ 347 (895)
T PRK10490 325 EKAVLRYAREHNL--GKIIIGRRAS 347 (895)
T ss_pred HHHHHHHHHHhCC--CEEEECCCCC
Confidence 2447888888777 9999999977
No 91
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=92.83 E-value=3.1 Score=40.47 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhCch--hhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHH
Q 047130 310 IMLALGAGYISDLFGQH--VYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKS 387 (815)
Q Consensus 310 l~~~l~~~~i~e~~G~~--~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~ 387 (815)
+..+...+++.+.+|+. .++||++++.++.-.....-++-+.+. .+-.-+.=..+|.+++...+.+...+.. .
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~----~~~qviiG~~iG~~f~~~~l~~~~~~~~-~ 78 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLL----ALAQVVIGILIGSRFTREVLAELKRLWP-A 78 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHH----HHHHHHHHHHHHccCCHHHHHHHHHHHH-H
Confidence 44555666777888886 788999988887754211111222222 2233344567899999877765544432 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcc
Q 047130 388 TAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISR 439 (815)
Q Consensus 388 ~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~ 439 (815)
.....+..+..-++.+++..++.++++.+++. + ..|-|.-++.......
T Consensus 79 ~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~L-a--~~PGGl~~m~~~A~~~ 127 (156)
T TIGR03082 79 ALLSTVLLLALSALLAWLLARLTGVDPLTAFL-A--TSPGGASEMAALAAEL 127 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-H--hCCchHHHHHHHHHHh
Confidence 44555555666788888899999999998853 3 5789988887765433
No 92
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=92.62 E-value=3 Score=51.80 Aligned_cols=43 Identities=7% Similarity=0.037 Sum_probs=34.7
Q ss_pred CCccceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeec
Q 047130 491 ASGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDL 535 (815)
Q Consensus 491 ~~~elrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel 535 (815)
++...||.++.-.-.+=..++.++..++. .....+.++|.+.-
T Consensus 627 ~~~~~~v~~~F~GG~DDREALa~a~rma~--~p~v~lTVirf~~~ 669 (832)
T PLN03159 627 NQVSHHVAVLFFGGPDDREALAYAWRMSE--HPGITLTVMRFIPG 669 (832)
T ss_pred cccceeEEEEecCCcchHHHHHHHHHHhc--CCCeEEEEEEEEcc
Confidence 34566999999777788889999999984 35789999999864
No 93
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.35 E-value=0.32 Score=57.55 Aligned_cols=115 Identities=11% Similarity=0.203 Sum_probs=75.7
Q ss_pred hhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhH---HHhcchhhHHHHH
Q 047130 94 RFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSM---IQKTGKKSLFTGL 170 (815)
Q Consensus 94 rl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~---l~~~~k~~~~i~~ 170 (815)
++.+-...+-+++|+++|- ++..... .+-.| ......+.++|+.+|++.+|+.--+.. +++.+.+...+|+
T Consensus 412 p~~lg~~~g~l~~gl~~g~--~~~~~~~-~~~~p---~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~ 485 (562)
T TIGR03802 412 PLTLGTGGGALISGLVFGW--LRSKHPT-FGNIP---SSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGI 485 (562)
T ss_pred ceeehhhHHHHHHHHHHHH--hcccCCc-ceecC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHH
Confidence 4445566788899999885 3321110 00122 445677999999999999999988765 5666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHH-HHHhhccHHHHHHHHHH
Q 047130 171 LTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVT-VVHSLSRFPSIACLVSD 222 (815)
Q Consensus 171 ~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig-~~ls~Ts~~vv~~iL~e 222 (815)
+-.++|.++++.+++++.+. ......| .+-+.|++|.+......
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~G~~aG~~t~t~~l~~a~~~ 530 (562)
T TIGR03802 486 VVTILPLIITMLIGKYVLKY--------DPALLLGALAGARTATPALGAVLER 530 (562)
T ss_pred HHHHHHHHHHHHHHHHHhCC--------CHHHHHHHhhccCCCcHHHHHHHHh
Confidence 77778877777777544331 1223444 45688999988776544
No 94
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=92.33 E-value=2.6 Score=51.14 Aligned_cols=71 Identities=10% Similarity=0.039 Sum_probs=48.9
Q ss_pred HHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCChHHHHHHHHHHhhhhhH
Q 047130 356 VSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLY--CKVPKRDAFALALIMSTKGIV 430 (815)
Q Consensus 356 ~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~--~~~~~~~~~~lgl~m~~kG~v 430 (815)
+..+.+++-.+..|++++...+... |. .+..+++.++..-++.+.+.+++ .+++|..++.+|.++++-.-+
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr~--wr--sV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLKH--WV--SVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHh--HH--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 3566777777788999999988765 32 23344444444445555555543 499999999999999987654
No 95
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=92.33 E-value=0.61 Score=55.71 Aligned_cols=126 Identities=14% Similarity=0.093 Sum_probs=83.5
Q ss_pred CccceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHH
Q 047130 492 SGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEE 571 (815)
Q Consensus 492 ~~elrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 571 (815)
...-|||||++.+.....+++-+..++ .+..+..+++|+..-.....+ ....+++...++ .++
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA--~~~~a~~~av~v~~~~~~~~~--------------~~~~~~l~~~~~-Lae 308 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLA--SRLHAKWTAVYVETPELHRLS--------------EKEARRLHENLR-LAE 308 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHH--HHhCCCeEEEEEecccccccc--------------HHHHHHHHHHHH-HHH
Confidence 455799999999999999999999999 446788899998542111000 011233333333 444
Q ss_pred hcCcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCC-CceEEE
Q 047130 572 KNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAP-CSVGIL 646 (815)
Q Consensus 572 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~Ap-CsVgIl 646 (815)
+..+ .+ .+..+ .+..+.|.++|.++++.-||+|-+.++++...+ .+++.+++++.+| .+|-|+
T Consensus 309 ~lGa--e~--~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~------~~~l~~~L~~~~~~idv~ii 372 (890)
T COG2205 309 ELGA--EI--VTLYG--GDVAKAIARYAREHNATKIVIGRSRRSRWRRLF------KGSLADRLAREAPGIDVHIV 372 (890)
T ss_pred HhCC--eE--EEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHh------cccHHHHHHhcCCCceEEEe
Confidence 3222 22 22333 599999999999999999999988775543333 2567779888885 344443
No 96
>COG2855 Predicted membrane protein [Function unknown]
Probab=91.50 E-value=24 Score=38.45 Aligned_cols=102 Identities=18% Similarity=0.192 Sum_probs=68.1
Q ss_pred HHhhhCCChhHHHHHhhhhcccccccccc-cccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhcchhhHHHH
Q 047130 91 VLKRFGIPMIASQITGGLILGQAIPGLNR-YYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTG 169 (815)
Q Consensus 91 llkrl~~P~iv~~IlaGillGP~~lg~~~-~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~ 169 (815)
.....++|..+--|+.||++|.. ...+ ... ..-.-.-+.+=++|.+ +.|.++++..+...|.+.+.+-
T Consensus 31 ~~~~~~l~al~lAIllGi~l~~l--~~~~~~~~-----~GI~fs~k~LLr~gIv----LlG~~ltl~~i~~~G~~~v~~~ 99 (334)
T COG2855 31 FSIHLGLSALTLAILLGILLGIL--PQIPAQTS-----AGITFSSKKLLRLGIV----LLGFRLTLSDIADVGGSGVLII 99 (334)
T ss_pred HhhhcCchHHHHHHHHHHHHhcc--ccchhhhc-----cchhhhHHHHHHHHHH----HHcceeeHHHHHHcCccHHHHH
Confidence 34557799999999999999932 2222 111 0112233455567777 6799999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhh
Q 047130 170 LLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSL 210 (815)
Q Consensus 170 ~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~ 210 (815)
......++++++.++.+++. ++..++++|.--|+
T Consensus 100 ~~~l~~t~~~~~~lg~~lgl-------d~~~a~Lia~GssI 133 (334)
T COG2855 100 AITLSSTFLFAYFLGKLLGL-------DKKLALLIAAGSSI 133 (334)
T ss_pred HHHHHHHHHHHHHHHHHhCC-------CHHHHHHHHccchh
Confidence 87777777776666664443 35666666654444
No 97
>PRK04972 putative transporter; Provisional
Probab=91.42 E-value=0.97 Score=53.39 Aligned_cols=104 Identities=15% Similarity=0.218 Sum_probs=67.8
Q ss_pred hhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHH---HhcchhhHHHH
Q 047130 93 KRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMI---QKTGKKSLFTG 169 (815)
Q Consensus 93 krl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l---~~~~k~~~~i~ 169 (815)
+++++-...|-+++|+++|-. |.- .| ..+.++|+.+|+|.+|++.-+..+ |+.+.+...++
T Consensus 33 ~~~~LG~~~g~L~vgl~~g~~--~~~-------~~-------~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~ 96 (558)
T PRK04972 33 GSIQLGNSIGVLVVSLLLGQQ--HFS-------IN-------TDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLA 96 (558)
T ss_pred eeEecCcchHHHHHHHHHHhC--CCC-------CC-------hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHH
Confidence 446677777999999999953 310 11 234589999999999999998764 55566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHH-HHHhhccHHHHHHHHH
Q 047130 170 LLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVT-VVHSLSRFPSIACLVS 221 (815)
Q Consensus 170 ~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig-~~ls~Ts~~vv~~iL~ 221 (815)
+...+++.+++..++++++. ......| .+-+.|++|.+.....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 97 LVMVGSALVIALGLGKLFGW---------DIGLTAGMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred HHHHHHHHHHHHHHHHHhCC---------CHHHHHHHhhccccCcHHHHHHHH
Confidence 66666666666655544332 1122233 3446788888776654
No 98
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=91.36 E-value=1.1 Score=53.00 Aligned_cols=79 Identities=19% Similarity=0.253 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhh-----hCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccC
Q 047130 80 VAFAVTHACHFVLKR-----FGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMD 154 (815)
Q Consensus 80 lil~~~~~~~~llkr-----l~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d 154 (815)
+.++++..+++++-| +++-.+.+-+++|+++|..... + -+.+.++|+++|+|.+|++.-
T Consensus 13 l~lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~-i---------------~~~v~~~gl~lFvy~vG~~~G 76 (562)
T TIGR03802 13 IALFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQ-I---------------DPGVKAVFFALFIFAIGYEVG 76 (562)
T ss_pred HHHHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCC-C---------------ChHHHHHHHHHHHHHhhhccC
Confidence 334444445555544 5567788999999999963221 1 123678999999999999999
Q ss_pred hhHHHhcchhhHHHHHHHHH
Q 047130 155 VSMIQKTGKKSLFTGLLTLL 174 (815)
Q Consensus 155 ~~~l~~~~k~~~~i~~~~~~ 174 (815)
+..++.-.|+.+...+.+++
T Consensus 77 p~Ff~~l~~~g~~~~~~a~~ 96 (562)
T TIGR03802 77 PQFFASLKKDGLREIILALV 96 (562)
T ss_pred HHHHHHHHhccHHHHHHHHH
Confidence 98876555444444444333
No 99
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=91.02 E-value=1.9 Score=41.87 Aligned_cols=114 Identities=20% Similarity=0.287 Sum_probs=66.6
Q ss_pred CCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHH---hcc-hhhHHHHHH
Q 047130 96 GIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQ---KTG-KKSLFTGLL 171 (815)
Q Consensus 96 ~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~---~~~-k~~~~i~~~ 171 (815)
++-...+-+++|+++|- ++...... +-. .......+.++|+.+|++.+|++--++.+. +.+ -..+.++..
T Consensus 20 ~LG~~~G~L~vgL~~G~--~~~~~p~~-~~~---p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~ 93 (154)
T TIGR01625 20 KLGNAGGVLFVGLLLGH--FGATGPLT-WYI---PFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGAL 93 (154)
T ss_pred EecccHHHHHHHHHHHh--ccccCCcc-eec---ChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHH
Confidence 33446788999999885 33321110 011 134677889999999999999999887654 433 123344444
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHH-HHHhhccHHHHHHHHHHh
Q 047130 172 TLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVT-VVHSLSRFPSIACLVSDL 223 (815)
Q Consensus 172 ~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig-~~ls~Ts~~vv~~iL~el 223 (815)
-.++|.+++..+...+.+ + ......| .+-+.|++|.+....+..
T Consensus 94 v~~~~~~~~~~~~~~~~~-~-------~~~~~~G~~aGa~T~tpaL~aa~~~~ 138 (154)
T TIGR01625 94 ITVVPTLLVAVALIKLLR-I-------NYALTAGMLAGATTNTPALDAANDTL 138 (154)
T ss_pred HHHHHHHHHHHHHHHHhC-C-------CHHHHHHHHhccccChHHHHHHHHHh
Confidence 445555555444443332 1 1223333 445789999887766543
No 100
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=90.93 E-value=2.9 Score=46.81 Aligned_cols=117 Identities=8% Similarity=0.032 Sum_probs=65.0
Q ss_pred HHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHH-HHHhhhhh-HHHHH
Q 047130 357 SGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALA-LIMSTKGI-VEIST 434 (815)
Q Consensus 357 ~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lg-l~m~~kG~-v~li~ 434 (815)
.+.++-.||..+|+..++..+........ ....+.....+...+.....+..++.++.-.+..| ..|. .|+ .+.++
T Consensus 66 ~~~lm~~fF~~igL~~~~~~lkkgg~~~~-~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~-GGhGTAaa~ 143 (368)
T PF03616_consen 66 QDFLMIIFFTTIGLGASLKLLKKGGKAVL-IFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFT-GGHGTAAAF 143 (368)
T ss_pred HHHHHHHHHHHHhhccchhhHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhcccccc-CCccHHHHH
Confidence 56778899999999999887765422110 12222222334555555556667788876665543 2222 222 22334
Q ss_pred Hhhcccc-cccchhHH--HHHHHHHHHHHHHHHHHHHhhhcccc
Q 047130 435 YNISRNI-ESLTDQMF--SFLTVEILVTAIIIPILVKFLYDPSR 475 (815)
Q Consensus 435 ~~~~~~~-~~i~~~~~--~~lv~~~ll~t~i~~~lv~~ly~p~~ 475 (815)
.....+. |.-+.... +...+-.+...+++.|+.+++.|+.+
T Consensus 144 g~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~ 187 (368)
T PF03616_consen 144 GPTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRKGK 187 (368)
T ss_pred HHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4444454 54333332 23334445556788999999886533
No 101
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=90.67 E-value=2.9 Score=49.19 Aligned_cols=117 Identities=21% Similarity=0.247 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchh-HHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHH
Q 047130 309 IIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGS-ALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKS 387 (815)
Q Consensus 309 ~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~-~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~ 387 (815)
.++.+.+...+++.+++++.++-+++|+++...+.... .+.. +....+++|......|+++|...+..... .
T Consensus 6 l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~---~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~----~ 78 (525)
T TIGR00831 6 LVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR---EIVLFLFLPPLLFEAAMNTDLRELRENFR----P 78 (525)
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCH---HHHHHHHHHHHHHHHHhcCCHHHHHHHHH----H
Confidence 33444455566777777777777777777764311110 0111 12235788888888999999998876521 2
Q ss_pred HHHHHHHHHHH-HHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHH
Q 047130 388 TAVIVAVVVLA-KVATTMIPPLYCKVPKRDAFALALIMSTKGIVEI 432 (815)
Q Consensus 388 ~~~i~~~~~~~-K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l 432 (815)
+..+.+...+. -.+.++...+..++|+..++.+|.++++-..+..
T Consensus 79 i~~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 79 IALIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 33333333322 2233333334678999999999999988876653
No 102
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=90.53 E-value=3 Score=45.46 Aligned_cols=123 Identities=13% Similarity=0.090 Sum_probs=74.6
Q ss_pred hHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHH-HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHH
Q 047130 355 MVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVI-VAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEIS 433 (815)
Q Consensus 355 ~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i-~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li 433 (815)
+.++++=|+.|.-+|..+|++-+... ++ ..++ -..+=++- ..+++.+.+.+++.+|+..+|.+=..-|-.++.
T Consensus 102 i~~gl~P~LIFlGIGAMtDFgpllan-P~----~~ll~gaaAQ~Gi-F~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf 175 (399)
T TIGR03136 102 FSNSLVACILFFGIGAMSDISFILAR-PW----ASITVALFAEMGT-FATLVIGYYCGLTPGEAAAVGTIGGADGPMVLF 175 (399)
T ss_pred HhcccHHHHHHHhccHHhcchHHHhC-hH----HHHHHHHHHHhhH-HHHHHHHHHcCCCHHHhhHHhhcccCCccHHHH
Confidence 34577888899999999999887765 23 1222 22333333 344555667799999999999987888888877
Q ss_pred HHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhhhcccccc-ccc-ccccc
Q 047130 434 TYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSRKY-AGY-QKRNI 485 (815)
Q Consensus 434 ~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~ly~p~~~~-~~~-~~r~i 485 (815)
+.+... -.++.+-.-..-.-+. +.=++.||++|.+--++.|. +-+ +.|++
T Consensus 176 ~s~kLA-p~Llg~IaVAAYsYMa-LVPiiqPpimklLttkkER~I~M~~~~r~V 227 (399)
T TIGR03136 176 ASLILA-KDLFVPISIIAYLYLS-LTYAGYPYLIKLLVPKKYRGLEVEMEFPDV 227 (399)
T ss_pred HHHhhh-hHhHHHHHHHHHHHHH-HHhcccchHHHhhcCHHHHcccCccCCCCC
Confidence 765422 2222222222222222 22456899999877544332 222 55544
No 103
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=90.27 E-value=2.8 Score=40.85 Aligned_cols=98 Identities=14% Similarity=0.232 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhhhCCC--hhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhH
Q 047130 80 VAFAVTHACHFVLKRFGIP--MIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSM 157 (815)
Q Consensus 80 lil~~~~~~~~llkrl~~P--~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~ 157 (815)
+.+.++.+.+.+++++|+| ..+|-++++.++.- .+..+ ...-..+.+++.+++--.+|.+++.+.
T Consensus 2 ~~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~--~~~~~-----------~~~P~~~~~~~qviiG~~iG~~f~~~~ 68 (156)
T TIGR03082 2 LLLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSL--AGGLE-----------ITLPPWLLALAQVVIGILIGSRFTREV 68 (156)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh--cCCcc-----------CCCCHHHHHHHHHHHHHHHHccCCHHH
Confidence 3455677888999999998 55666666655441 12111 111234556777778889999999999
Q ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047130 158 IQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRIL 191 (815)
Q Consensus 158 l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~ 191 (815)
+++..+... .++...+....++.+.++++.+..
T Consensus 69 l~~~~~~~~-~~l~~~~~~l~~~~~~~~~l~~~~ 101 (156)
T TIGR03082 69 LAELKRLWP-AALLSTVLLLALSALLAWLLARLT 101 (156)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 977765443 345555666666677777776643
No 104
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=89.21 E-value=1 Score=53.81 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=66.4
Q ss_pred cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccccchhhhhHH--HHHHHhcccCCCCCCEEEEEEEe
Q 047130 665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDS--EVLKEVKPENNFNQRVKYVVEMV 742 (815)
Q Consensus 665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~d~--~~l~~~~~~~~~~~~v~y~e~~V 742 (815)
..+|++.-.+++....-+..|.|+|+..+++.|++|+.+|+.....+...+.+++ ++.+++..+ -...|. ..|
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae----~~~l~~-~dv 322 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAE----IVTLYG-GDV 322 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCe----EEEEeC-CcH
Confidence 4699999999999999999999999999999999999988554433333344442 222333221 123333 223
Q ss_pred cCcHHHHHHHHhhCCCccEEEEcccCC
Q 047130 743 NEGQETLAKIQSVVPKYDLVIVGRRDN 769 (815)
Q Consensus 743 ~~g~~~~~~i~~~~~~~DLiivG~~~~ 769 (815)
. .++.++.+..+. --+++|++.+
T Consensus 323 ~--~~i~~ya~~~~~--TkiViG~~~~ 345 (890)
T COG2205 323 A--KAIARYAREHNA--TKIVIGRSRR 345 (890)
T ss_pred H--HHHHHHHHHcCC--eeEEeCCCcc
Confidence 2 347777787665 8999999987
No 105
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=88.71 E-value=2.6 Score=45.44 Aligned_cols=111 Identities=17% Similarity=0.226 Sum_probs=70.7
Q ss_pred HHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHh
Q 047130 357 SGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYN 436 (815)
Q Consensus 357 ~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~ 436 (815)
++++=|+-|.-+|..+|++-+... ++ ..++-..+-++ ...+++.+...+++.+|+..+|.+=..-|-.++.+.+
T Consensus 68 ~~l~P~LIF~GIGAmtDFgpllan-P~----~~llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~ 141 (360)
T PF03977_consen 68 NGLFPPLIFMGIGAMTDFGPLLAN-PK----TLLLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSS 141 (360)
T ss_pred cchhhHHHHHHHhHHHhhHHHHhC-HH----HHHHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHH
Confidence 577888899999999999887765 33 22222222233 3455666777799999999999987888888877766
Q ss_pred hcccccccchhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 047130 437 ISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPSR 475 (815)
Q Consensus 437 ~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~ly~p~~ 475 (815)
... -..+.+-.-..-..+. +.=.+.||++|.+--++.
T Consensus 142 ~LA-p~LlgpIaVaAYsYMa-LvPiiqPpimklLttkke 178 (360)
T PF03977_consen 142 KLA-PHLLGPIAVAAYSYMA-LVPIIQPPIMKLLTTKKE 178 (360)
T ss_pred hhh-HHHHHHHHHHHHHHHH-HHhhhhhHHHHHhcCHHH
Confidence 422 2222222222222222 235678999998775443
No 106
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=88.23 E-value=25 Score=36.21 Aligned_cols=111 Identities=18% Similarity=0.190 Sum_probs=78.2
Q ss_pred hhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 047130 345 GSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIM 424 (815)
Q Consensus 345 ~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m 424 (815)
++.+..-+++-+-.+..|+| =+.+.+..+ |. .+..-++++.+.-++.+++.+++++.+..-. . .+
T Consensus 61 ~~~i~~lLgPAtVAlAvPLY-------kq~~~ik~~--w~--~I~~g~~vGs~~ai~s~~llak~~g~~~~~~--~--Sl 125 (230)
T COG1346 61 GQWINFLLGPATVALAVPLY-------KQRHLIKRH--WK--PILAGVLVGSVVAIISGVLLAKLFGLSPELI--L--SL 125 (230)
T ss_pred cHHHHHHHHHHHHHHhhHHH-------HHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--H--Hh
Confidence 34555556666666777777 344555544 43 4555666666777888888899988876433 2 35
Q ss_pred hhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 047130 425 STKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFL 470 (815)
Q Consensus 425 ~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~l 470 (815)
.||....=+...+..+.|-+.+-+-..+++.-++...++|++.+.+
T Consensus 126 ~PkSvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 126 LPKSVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred cccccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999998888888888888877666667777777778888888875
No 107
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=87.99 E-value=55 Score=37.38 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHH
Q 047130 213 FPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILT 249 (815)
Q Consensus 213 ~~vv~~iL~el~ll~s~~g~lals~a~v~D~~~~~ll 249 (815)
+|++..+.+.+|+.+.+.--.+++++.+.|..+.++-
T Consensus 117 TPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~Lp 153 (423)
T PF02040_consen 117 TPIVLALARRLGLNPKPPLPFLFACAFIANTASLLLP 153 (423)
T ss_pred HHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhcccc
Confidence 6888888888887555444578899999999998754
No 108
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=87.40 E-value=5.7 Score=42.83 Aligned_cols=75 Identities=20% Similarity=0.256 Sum_probs=54.4
Q ss_pred hHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhcchhhHHHHHHHHHHHHHH
Q 047130 100 IASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLL 179 (815)
Q Consensus 100 iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~ 179 (815)
.+--|+.|+++|+.. ...+ + .++.=-.+++.++.|..|..+|++.+.+.|.+.+.+++..+.+++..
T Consensus 169 lilpILiGmilGNld-~~~~---~---------~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~ 235 (312)
T PRK12460 169 ALLPLVLGMILGNLD-PDMR---K---------FLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFF 235 (312)
T ss_pred HHHHHHHHHHHhccc-hhhH---H---------HHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 556677788888621 1111 1 11111223888999999999999999999999999999888888887
Q ss_pred HHHHHHHH
Q 047130 180 GAAALEKM 187 (815)
Q Consensus 180 ~~~~~~~l 187 (815)
++.+..++
T Consensus 236 ~~~i~rll 243 (312)
T PRK12460 236 NIFADRLV 243 (312)
T ss_pred HHHHHHHh
Confidence 77777655
No 109
>COG2985 Predicted permease [General function prediction only]
Probab=85.73 E-value=2.5 Score=47.76 Aligned_cols=103 Identities=18% Similarity=0.312 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhhcccChhH---HHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHH-HHhhccHH
Q 047130 139 TFGYILFQFLTGVKMDVSM---IQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTV-VHSLSRFP 214 (815)
Q Consensus 139 ~lgli~~lF~~Gle~d~~~---l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~-~ls~Ts~~ 214 (815)
++|+++|.+.+|+|--+.. +|+.+++-..+++.- ++.+.++++++.+.++ +...+..|. +-+.||+|
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~~-----~~~~~~~Gm~sGAlTsTP 132 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI----VIAALLLAWVLHKLFG-----IDLGLIAGMFSGALTSTP 132 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhcC-----CCHHHhhhhhcccccCCc
Confidence 8999999999999998775 678888876666543 3444555556655443 222222322 33567766
Q ss_pred HHH---HHHHHhhhccChhHH--HHHHHHHHHHHHHHHHHH
Q 047130 215 SIA---CLVSDLRIINSELGR--LGLSCALVSEMIGLILTR 250 (815)
Q Consensus 215 vv~---~iL~el~ll~s~~g~--lals~a~v~D~~~~~ll~ 250 (815)
... .+|+|++....-.-+ +.-+.+.---++++++.+
T Consensus 133 ~L~aa~~~L~~lg~~~~~~~~~~~gYamaYp~Gil~ii~~~ 173 (544)
T COG2985 133 GLGAAQDILRELGAPSQALDQMGMGYALAYPIGILGIILGA 173 (544)
T ss_pred hhHHHHHHHHhhccchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 554 456666643221222 233334444455554443
No 110
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=84.70 E-value=52 Score=34.18 Aligned_cols=110 Identities=11% Similarity=0.068 Sum_probs=72.2
Q ss_pred hHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHh
Q 047130 346 SALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMS 425 (815)
Q Consensus 346 ~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~ 425 (815)
+.+..-+.+-+-.+-.|+| -+.+.+... |. .+.+-++++.+.-+++++..+++++.+..- . ..|.
T Consensus 65 ~~l~~lLgPAtVALAvPLY-------~q~~~lk~~--~~--~Il~~~~vG~~~~i~s~~~la~~lgl~~~~--~--~Sl~ 129 (232)
T PRK04288 65 DIISFFLEPATIAFAIPLY-------KKRDVLKKY--WW--QILGGIVVGSVCSVLIIYLVAKLIQLDNAV--M--ASML 129 (232)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HhHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHCcCHHH--H--HHHh
Confidence 3344445555556677766 344455543 32 345555566667778888888888887633 2 3367
Q ss_pred hhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 047130 426 TKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFL 470 (815)
Q Consensus 426 ~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~l 470 (815)
+|....=+-..+..+.|-+.+-.-..++++-++-.+++|++.|++
T Consensus 130 pKSVTtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 130 PQAATTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred hHhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999988888888888887666555566666667677777777763
No 111
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=83.83 E-value=8 Score=39.00 Aligned_cols=104 Identities=12% Similarity=0.168 Sum_probs=59.1
Q ss_pred HHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047130 329 FGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPL 408 (815)
Q Consensus 329 lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~ 408 (815)
++++++|+++....+......++.... .+..-+|++-+.+.-|-..+.+-....+ ..+.+-+..+++-++++++..+
T Consensus 2 l~~li~Gi~lG~~~~~~~~~~~~~~~~--~L~lLLF~VGi~lG~~~~~l~~l~~~g~-~~Llipl~tIlGSllgg~l~~~ 78 (191)
T PF03956_consen 2 LIALILGILLGYFLRPPFSLIDKISTY--ALYLLLFLVGIDLGSNREILRQLRSLGK-RALLIPLATILGSLLGGLLASL 78 (191)
T ss_pred eeeHHHHHHHHHHhcccccccccHHHH--HHHHHHHHHHHHhcCCHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666555422221222333322 3344445544444445222222111111 5677777788999999999999
Q ss_pred hcCCChHHHHHHHHHHhhhhhHHHHHH
Q 047130 409 YCKVPKRDAFALALIMSTKGIVEISTY 435 (815)
Q Consensus 409 ~~~~~~~~~~~lgl~m~~kG~v~li~~ 435 (815)
+.++|++|++.++.+++=-......+.
T Consensus 79 ll~~~~~~~lav~sG~GwYSlsg~~i~ 105 (191)
T PF03956_consen 79 LLGLSLKESLAVASGFGWYSLSGVLIT 105 (191)
T ss_pred HhcCCHHHHHHHHccCcHHHhHHHHHH
Confidence 999999999999877655444444443
No 112
>PRK04972 putative transporter; Provisional
Probab=82.57 E-value=6.8 Score=46.41 Aligned_cols=115 Identities=21% Similarity=0.355 Sum_probs=76.2
Q ss_pred hCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhH---HHhcchhhHHHHHH
Q 047130 95 FGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSM---IQKTGKKSLFTGLL 171 (815)
Q Consensus 95 l~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~---l~~~~k~~~~i~~~ 171 (815)
+++-.--|-+++|+++|- ++...... +-.| ......+.++|+.+|+..+|+.--.+. +++.+.+.+.++.+
T Consensus 408 ~~LG~agG~L~~gl~~g~--~~~~~~~~-~~~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~ 481 (558)
T PRK04972 408 FGIGNAAGLLFAGIMLGF--LRANHPTF-GYIP---QGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLI 481 (558)
T ss_pred eeccccHHHHHHHHHHHh--ccccCCCc-eeeC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHH
Confidence 344556688999999884 33322111 1122 456678999999999999999877654 45667777778888
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHH
Q 047130 172 TLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSD 222 (815)
Q Consensus 172 ~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~e 222 (815)
-.++|.++++.+++++.+. ++ ..+.=+++-+.|++|.+......
T Consensus 482 ~t~~~~~~~~~~~~~~~k~------~~-~~~~G~~aG~~t~~~~l~~~~~~ 525 (558)
T PRK04972 482 VSLVPVVICFLFGAYVLRM------NR-ALLFGAIMGARTCAPAMEIISDT 525 (558)
T ss_pred HHHHHHHHHHHHHHHHHcC------CH-HHHHHHHhCCCCCcHHHHHHHhh
Confidence 8888888888888665542 12 22333355678888887766543
No 113
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=81.76 E-value=1.9 Score=46.82 Aligned_cols=133 Identities=20% Similarity=0.134 Sum_probs=75.0
Q ss_pred HHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhh-----hcCCChHHHHHHHHHHhhhhhH
Q 047130 356 VSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPL-----YCKVPKRDAFALALIMSTKGIV 430 (815)
Q Consensus 356 ~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~-----~~~~~~~~~~~lgl~m~~kG~v 430 (815)
.++++=|+.|.-+|..+|++-+...+.. .++-..+-++-+.....+.. +.+++.+|+..+|.+=..-|-.
T Consensus 132 ~~gi~P~LIF~GIGAMtDFgpLlanP~~-----~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPT 206 (433)
T PRK15475 132 GSGVAPLVIFMGVGAMTDFGPLLANPRT-----LLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPT 206 (433)
T ss_pred hcchHHHHHHHhccHHhcchHHhhCHHH-----HHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCch
Confidence 4577888899999999999887655321 22222222332222222222 2378999999999987788888
Q ss_pred HHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccc-cccccccccccccccCCCccceeEEee
Q 047130 431 EISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPS-RKYAGYQKRNIMQHSKASGELRILACI 501 (815)
Q Consensus 431 ~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~ly~p~-~~~~~~~~r~i~~~~~~~~elrILv~i 501 (815)
++.+.+... -.++.+-.-..-..|.++ =++.||++|.+--++ |+.+-++.|++ ....||+.|+
T Consensus 207 sIfvsskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER~I~M~~lr~V------Sk~eKIlFPi 270 (433)
T PRK15475 207 AIYLSGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTETERKIRMVQLRTV------SKREKILFPV 270 (433)
T ss_pred HHHhHhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHhCccCCCCCCC------CccchhHHHH
Confidence 877665422 122222221112222222 456899999876543 33334445544 2334666554
No 114
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=81.54 E-value=2 Score=46.74 Aligned_cols=133 Identities=19% Similarity=0.122 Sum_probs=74.8
Q ss_pred HHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhh-----hcCCChHHHHHHHHHHhhhhhH
Q 047130 356 VSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPL-----YCKVPKRDAFALALIMSTKGIV 430 (815)
Q Consensus 356 ~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~-----~~~~~~~~~~~lgl~m~~kG~v 430 (815)
.++++=|+.|.-+|..+|++-+...+.. .++-..+-++-+.....+.. +.+++.+|+..+|.+=..-|-.
T Consensus 132 ~~gi~P~LIF~GIGAMtDFgpLlanP~~-----~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPT 206 (433)
T PRK15476 132 GSGVAPLVIFMGVGAMTDFGPLLANPRT-----LLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPT 206 (433)
T ss_pred hcchHHHHHHHhccHHhcchHHhhCHHH-----HHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCch
Confidence 4577888899999999999887655321 22222222332222222222 2378999999999987788888
Q ss_pred HHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccc-cccccccccccccccCCCccceeEEee
Q 047130 431 EISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPS-RKYAGYQKRNIMQHSKASGELRILACI 501 (815)
Q Consensus 431 ~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~ly~p~-~~~~~~~~r~i~~~~~~~~elrILv~i 501 (815)
++.+.+... -.++.+-.-..-..|.+ .=++.||++|.+--++ |+..-++.|++ ....||+.|+
T Consensus 207 sIfvsskLA-P~Llg~IaVAAYSYMaL-VPiIQPpimklLTTkkER~I~M~~lr~V------Sk~eKIlFPi 270 (433)
T PRK15476 207 AIYLSGKLA-PELLGAIAVAAYSYMAL-VPLIQPPIMKALTTEKERKIRMVQLRTV------SKREKILFPV 270 (433)
T ss_pred HHHhHhhhh-hHhHHHHHHHHHHHHHH-HhcccchHHHhccCHHHhCccCCCCCCC------CccchhHHHH
Confidence 877665422 12222222111222222 2456899999876443 33334445544 2334666554
No 115
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=81.54 E-value=2 Score=46.74 Aligned_cols=133 Identities=19% Similarity=0.122 Sum_probs=74.8
Q ss_pred HHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhh-----hcCCChHHHHHHHHHHhhhhhH
Q 047130 356 VSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPL-----YCKVPKRDAFALALIMSTKGIV 430 (815)
Q Consensus 356 ~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~-----~~~~~~~~~~~lgl~m~~kG~v 430 (815)
.++++=|+.|.-+|..+|++-+...+.. .++-..+-++-+.....+.. +.+++.+|+..+|.+=..-|-.
T Consensus 132 ~~gi~P~LIF~GIGAMtDFgpLlanP~~-----~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPT 206 (433)
T PRK15477 132 GSGVAPLVIFMGVGAMTDFGPLLANPRT-----LLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPT 206 (433)
T ss_pred hcchHHHHHHHhccHHhcchHHhhCHHH-----HHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCch
Confidence 4577888899999999999887655321 22222222332222222222 2378999999999987788888
Q ss_pred HHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccc-cccccccccccccccCCCccceeEEee
Q 047130 431 EISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPS-RKYAGYQKRNIMQHSKASGELRILACI 501 (815)
Q Consensus 431 ~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~ly~p~-~~~~~~~~r~i~~~~~~~~elrILv~i 501 (815)
++.+.+... -.++.+-.-..--.|.+ .=++.||++|.+--++ |+..-++.|++ ....||+.|+
T Consensus 207 sIfvsskLA-P~Llg~IaVAAYSYMaL-VPiIQPpimklLTTkkER~I~M~~lr~V------Sk~eKIlFPi 270 (433)
T PRK15477 207 AIYLSGKLA-PELLGAIAVAAYSYMAL-VPLIQPPIMKALTTEKERKIRMVQLRTV------SKREKILFPV 270 (433)
T ss_pred HHHhHhhhh-hHhHHHHHHHHHHHHHH-HhcccchHHHhccCHHHhCccCCCCCCC------CccchhHHHH
Confidence 877665422 12222222111222222 2456899999876443 33334445544 2334666554
No 116
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=81.36 E-value=26 Score=39.67 Aligned_cols=167 Identities=10% Similarity=0.082 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHHhh--hCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhccc
Q 047130 76 LQIIVAFAVTHACHFVLKR--FGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKM 153 (815)
Q Consensus 76 l~i~lil~~~~~~~~llkr--l~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~ 153 (815)
..+.+.+.+++.+...++. +.+|.++.-+++|+++.+. +..... .+ -..+.++.++++.+-+++-.+=..+
T Consensus 222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni-~~~~~~-~~-----~~~~~i~~I~~~sLdlfl~~AlmsL 294 (398)
T TIGR00210 222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNP-LSFKKF-PW-----VAERAVSVIGNVSLSLFLAIALMSL 294 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHH-HHHhCc-cc-----cchHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555666677777777765 7799999999999998863 222111 00 1244899999999999998888899
Q ss_pred ChhHHHhcchhhHHHHHHHHHHHHHHHHHH-HHHHHHhhccCcchHHHHHHHHHHHhhccHHHH-HHHH-HHhhhccChh
Q 047130 154 DVSMIQKTGKKSLFTGLLTLLIPFLLGAAA-LEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSI-ACLV-SDLRIINSEL 230 (815)
Q Consensus 154 d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~-~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv-~~iL-~el~ll~s~~ 230 (815)
++..+....-..+.+.+.+.+...+....+ ...+++.++ ..-..+-..|..+..|+.++. .+.+ +++|-.+...
T Consensus 295 ~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~yd---aaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af 371 (398)
T TIGR00210 295 QLWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDYD---AAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAF 371 (398)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchHH---HHHHhcccccccccchHHHHHHHHHHHhccCCCCcce
Confidence 999999999999999888888877654332 233333211 001122344555555544322 2222 3334322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047130 231 GRLGLSCALVSEMIGLILTRSA 252 (815)
Q Consensus 231 g~lals~a~v~D~~~~~ll~v~ 252 (815)
=-+=+-.+.+-|+...+++...
T Consensus 372 ~ivPlvgaf~id~~n~~~i~~f 393 (398)
T TIGR00210 372 IVVPLVGAFFIDIINALVIKQF 393 (398)
T ss_pred ehhhhHHHHHHHHhhHHHHHHH
Confidence 2333455777777776655443
No 117
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=81.24 E-value=4.9 Score=43.22 Aligned_cols=112 Identities=18% Similarity=0.129 Sum_probs=65.6
Q ss_pred hHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCC------ChHHHHHHHHHHhhhh
Q 047130 355 MVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKV------PKRDAFALALIMSTKG 428 (815)
Q Consensus 355 ~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~------~~~~~~~lgl~m~~kG 428 (815)
+.++++=|+.|.-+|..+|++-+...+ + ..++-..+=++- ..+++.+.+.++ +.+|+..+|.+=..-|
T Consensus 60 i~~~l~P~LIFlGIGAmtDFgpllanP-~----~~llGaaAQ~Gi-F~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADG 133 (354)
T TIGR01109 60 IGSGIAPLLIFMGIGALTDFGPLLANP-R----TLLLGAAAQFGI-FATVFGALTLNFFGIISFSLPQAAAIGIIGGADG 133 (354)
T ss_pred HhcchHHHHHHHhccHHhhhHHHHhCh-H----HHHHHHHHHhhH-HHHHHHHHHhCCCcccccChhhceeeeeeccCCC
Confidence 345788889999999999998876553 2 112222222222 234444555566 7799999998877778
Q ss_pred hHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 047130 429 IVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFLYDPS 474 (815)
Q Consensus 429 ~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~ly~p~ 474 (815)
-.++.+.+... -.++.+-.-..-.-+. +.=.+.||++|.+--++
T Consensus 134 Pt~If~s~~la-p~Llg~IaVAAYsYMa-LvPiiqPpimklLttkk 177 (354)
T TIGR01109 134 PTAIYLSGKLA-PELLAAIAVAAYSYMA-LVPIIQPPIMKALTSEK 177 (354)
T ss_pred chhhhhHhhhh-hHHHHHHHHHHHHHHH-HHhcccchHHHhhcChH
Confidence 88776655321 1122222111112222 22456899999876443
No 118
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=80.11 E-value=31 Score=37.72 Aligned_cols=134 Identities=11% Similarity=0.137 Sum_probs=78.7
Q ss_pred hhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhcchhhHHHHHHHH
Q 047130 94 RFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTL 173 (815)
Q Consensus 94 rl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~ 173 (815)
-++.|.+++.+++ +++...... +|..-.+.++.+++...-+-||..|+.++.+.+++..|........-.
T Consensus 179 ~~~nP~iia~i~G-l~~~~~~i~---------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kl 248 (321)
T TIGR00946 179 LIKFPPLWAPLLS-VILSLVGFK---------MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRF 248 (321)
T ss_pred HHhCCChHHHHHH-HHHHHHhhc---------CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHH
Confidence 3578888876655 555532221 233346789999999999999999999999888777666655544444
Q ss_pred -HHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHH
Q 047130 174 -LIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSELGRLGLSCALVSEMIGLILT 249 (815)
Q Consensus 174 -~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~g~lals~a~v~D~~~~~ll 249 (815)
+.|.+. +.+...++. + ....-..+..+...+++...++.+.--.+. +.+-+...++-+++++.+
T Consensus 249 il~P~i~-~~~~~~~~l----~----~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~---~~aa~~v~~sT~ls~~tl 313 (321)
T TIGR00946 249 LVQPAVM-AGISKLIGL----R----GLELSVAILQAALPGGAVAAVLATEYEVDV---ELASTAVTLSTVLSLISL 313 (321)
T ss_pred HHHHHHH-HHHHHHhCC----C----hHHHHHHHHHHcCChhhHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHH
Confidence 344443 333333321 1 122344455566666666667665432222 444444444545554443
No 119
>PRK03818 putative transporter; Validated
Probab=79.84 E-value=11 Score=44.77 Aligned_cols=106 Identities=18% Similarity=0.250 Sum_probs=70.4
Q ss_pred hHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHh----cchhhHHHHHHHHHH
Q 047130 100 IASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQK----TGKKSLFTGLLTLLI 175 (815)
Q Consensus 100 iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~----~~k~~~~i~~~~~~i 175 (815)
.-|-+++|+++|- ++...... +-.| ......+.++|+.+|+..+|+.--...+.. .+.+.+.+|..-.++
T Consensus 403 ~~G~L~~gl~~g~--~~~~~~~~-~~~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~ 476 (552)
T PRK03818 403 AGGPLIVALILGR--IGSIGKLY-WFMP---PSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAV 476 (552)
T ss_pred chHHHHHHHHHHh--ccCCCCce-eecC---HHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHH
Confidence 4678899999884 33321111 1122 445678889999999999999888776543 456667777887888
Q ss_pred HHHHHHHHHHHHHHhhccCcchHHHHHHHH-HHHhhccHHHHHHH
Q 047130 176 PFLLGAAALEKMSRILGIGMEDKMKLWVVT-VVHSLSRFPSIACL 219 (815)
Q Consensus 176 p~~~~~~~~~~l~~~~~~~~~~~~~~l~ig-~~ls~Ts~~vv~~i 219 (815)
|.+++..+++++.+. .....+| .+-+.|++|.+...
T Consensus 477 ~~~~~~~~~~~~~~~--------~~~~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 477 PLLIVGILARMLAKM--------NYLTLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHHHHHHHHHHHcC--------CHHHHHHHHhccCCCcHHHHHH
Confidence 888888776555441 1223444 45678888887655
No 120
>PRK10711 hypothetical protein; Provisional
Probab=78.81 E-value=74 Score=33.05 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=67.1
Q ss_pred HHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhh
Q 047130 349 VEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKG 428 (815)
Q Consensus 349 ~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG 428 (815)
..-+.+-+-.+-.|+| =+.+.+... |. .+..-+.++.+.-++.+++.+++++.+..-. ..|.+|.
T Consensus 63 ~~lLgPAtVALAvPLY-------~q~~~lk~~--~~--~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~----~Sl~pkS 127 (231)
T PRK10711 63 NDLLQPAVVALAFPLY-------EQLHQIRAR--WK--SIISICFIGSVVAMVTGTAVALWMGATPEIA----ASILPKS 127 (231)
T ss_pred HhhhhHHHHHHHHHHH-------HhHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHCcCHHHH----HHHhhhh
Confidence 3334444455666665 233444433 32 3444455566667778888888888865433 2367999
Q ss_pred hHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 047130 429 IVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFL 470 (815)
Q Consensus 429 ~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~l 470 (815)
...=+-..+..+.|-+.+-.-..++++-++-..++|++.+++
T Consensus 128 VTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 128 VTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAM 169 (231)
T ss_pred hhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888887778888776655555555666666666777777763
No 121
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=78.38 E-value=46 Score=38.12 Aligned_cols=72 Identities=21% Similarity=0.317 Sum_probs=50.0
Q ss_pred HhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhc--CCChHHHHHHHHHHhhhhhHHHH
Q 047130 358 GLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYC--KVPKRDAFALALIMSTKGIVEIS 433 (815)
Q Consensus 358 ~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~--~~~~~~~~~lgl~m~~kG~v~li 433 (815)
.+++|.-....|+++|...+..... .+..+.....+...++.....++. ++|+..++.+|.++++-.-+.+.
T Consensus 64 ~l~l~ilLf~~g~~l~~~~l~~~~~----~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~ 137 (429)
T COG0025 64 VLFLAILLFAGGLELDLRELRRVWR----SILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVS 137 (429)
T ss_pred HHHHHHHHHHhHhcCCHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhH
Confidence 5677777777899999999887632 344444444445555555555555 89999999999998887766654
No 122
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=78.17 E-value=26 Score=38.45 Aligned_cols=101 Identities=18% Similarity=0.160 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCC--hhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhccc
Q 047130 76 LQIIVAFAVTHACHFVLKRFGIP--MIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKM 153 (815)
Q Consensus 76 l~i~lil~~~~~~~~llkrl~~P--~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~ 153 (815)
.++.+++.++...+++++|+|+| .++|-++++.++.-. +..+ .- -.. .+..++.+++=-.+|.++
T Consensus 155 ~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~--~~~~----~~----~P~---~l~~~aqv~iG~~iG~~f 221 (318)
T PF05145_consen 155 LWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLF--GGPS----FS----LPP---WLVNAAQVLIGASIGSRF 221 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--hCCC----CC----CCH---HHHHHHHHHHHHHHHccc
Confidence 45566667778899999999987 455555555554422 1111 11 123 344556666667999999
Q ss_pred ChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047130 154 DVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRI 190 (815)
Q Consensus 154 d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~ 190 (815)
|.+.+++..| .+..++...+.-+..+.+.++.+.+.
T Consensus 222 ~~~~l~~~~~-~~~~~l~~~~~~l~~~~~~a~~l~~~ 257 (318)
T PF05145_consen 222 TRETLRELRR-LLPPALLSTLLLLALCALFAWLLSRL 257 (318)
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999877664 44445555555566666666666554
No 123
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=77.98 E-value=25 Score=35.38 Aligned_cols=106 Identities=25% Similarity=0.333 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHhhh---CCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHH-------HHH
Q 047130 77 QIIVAFAVTHACHFVLKRF---GIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYI-------LFQ 146 (815)
Q Consensus 77 ~i~lil~~~~~~~~llkrl---~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli-------~~l 146 (815)
.+.++=++..+.+++.||+ |++.----|+.|.++.-.. |....= .+....+..++.+|++ |-.
T Consensus 17 aFa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~TgG------~kGlaDi~lfsGiglmGGaMlRDfAI 89 (254)
T TIGR00808 17 AFAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTGG------EKGLADIAIFGGFGLMGGAMLRDLAI 89 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccCC------ccccchhhhhcchhhhhhHHHHHHHH
Confidence 3333434444555666665 5665555667777765311 111100 1122233344444432 122
Q ss_pred HHhhcccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047130 147 FLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSR 189 (815)
Q Consensus 147 F~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~ 189 (815)
-....|.|.+++||.+..-..--+.+.++||+.|..+++.++.
T Consensus 90 vaTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY 132 (254)
T TIGR00808 90 VATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGY 132 (254)
T ss_pred HHHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3566799999999999988887888999999999999998876
No 124
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=77.36 E-value=6.1 Score=39.39 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=32.4
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeec
Q 047130 667 RVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVK 704 (815)
Q Consensus 667 ~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~ 704 (815)
+|++.+.||+|.--.+....++.+..+.+++++++...
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~ 38 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHG 38 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-S
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 58999999999999999999999999999999999854
No 125
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=76.90 E-value=13 Score=36.98 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=33.5
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeec
Q 047130 667 RVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVK 704 (815)
Q Consensus 667 ~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~ 704 (815)
+|++.+.||.|.--++.++.+.++..+.+++++++...
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g 38 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHG 38 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 58999999999999999999988877888999998654
No 126
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=76.72 E-value=5.7 Score=33.98 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=28.1
Q ss_pred EEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEee
Q 047130 668 VAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFI 702 (815)
Q Consensus 668 I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~ 702 (815)
|++++.||+|+..++.++.+.+ ..+.+++.+++.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~ 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH
Confidence 5789999999999999999987 446677777764
No 127
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=74.75 E-value=13 Score=36.83 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=33.1
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeec
Q 047130 667 RVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVK 704 (815)
Q Consensus 667 ~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~ 704 (815)
+|++.+.||.|+--++.++.+...+.+.+++++++.+.
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~ 38 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHG 38 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 58899999999999999999988776788999998754
No 128
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=74.56 E-value=8.8 Score=43.04 Aligned_cols=102 Identities=15% Similarity=0.188 Sum_probs=55.4
Q ss_pred HHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHh-hcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047130 330 GPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTS-ASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPL 408 (815)
Q Consensus 330 GafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~-~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~ 408 (815)
...++|....+..-+.++-.+.+..++..+++|.+.+. ++-..+...+.+. | .+.+..++..+.=++..++..+
T Consensus 11 ~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~ 85 (385)
T PF03547_consen 11 LIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSL--W---FIPVFAFIIFILGLLLGFLLSR 85 (385)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhh--H---HHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555445666777888889999999987554 3433334433322 2 2333333333444556666677
Q ss_pred hcCCChHHHHHH--HHHHhhhhhHHHHHHh
Q 047130 409 YCKVPKRDAFAL--ALIMSTKGIVEISTYN 436 (815)
Q Consensus 409 ~~~~~~~~~~~l--gl~m~~kG~v~li~~~ 436 (815)
+++.+.++.... +...+--|.+.+-+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~N~~~lglpi~~ 115 (385)
T PF03547_consen 86 LFRLPKEWRGVFVLAASFGNTGFLGLPILQ 115 (385)
T ss_pred hcCCCcccceEEEecccCCcchhhHHHHHH
Confidence 777776655332 2223334444444443
No 129
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=74.18 E-value=1.1e+02 Score=31.60 Aligned_cols=105 Identities=19% Similarity=0.257 Sum_probs=64.4
Q ss_pred hhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhH
Q 047130 351 KLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIV 430 (815)
Q Consensus 351 kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v 430 (815)
-+++-+-.+-.|+| -+.+.+... |. .+.+-+.++.+.-+..+++.+++++.+. .+.. .+.+|...
T Consensus 64 lLgPAtVALAvPLY-------~~~~~lk~~--~~--~Il~~~~~G~~~~~~s~~~la~~lg~~~--~i~~--Sl~pkSvT 128 (226)
T TIGR00659 64 LLGPAVVALAIPLY-------KQLPQIKKY--WK--EIILNVAVGSVIAIISGTLLALLLGLGP--EIIA--SLLPKSVT 128 (226)
T ss_pred hhHHHHHHHHHHHH-------HhHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHCcCH--HHHH--HhhhHHhh
Confidence 34444445666665 233444433 32 3444444555566777888888888874 3333 36799988
Q ss_pred HHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 047130 431 EISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKFL 470 (815)
Q Consensus 431 ~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~l 470 (815)
.=+-..+..+.|-..+-.-..++++-++-..+++++.+++
T Consensus 129 tpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 129 TPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8777777777776554455555566666666777777764
No 130
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=74.00 E-value=2.1 Score=44.86 Aligned_cols=126 Identities=21% Similarity=0.249 Sum_probs=76.3
Q ss_pred HHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHh
Q 047130 357 SGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYN 436 (815)
Q Consensus 357 ~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~ 436 (815)
++++=++.|.-+|..+|++.+...+.. +++-..+-++ +..+++.+...++..+|+..+|.+=..-|-.++.+.+
T Consensus 83 ~~i~PllIFmGvGAmTDFgpllanPkt-----llLGaAAQ~G-IF~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~ 156 (375)
T COG1883 83 SGIFPLLIFMGVGAMTDFGPLLANPKT-----LLLGAAAQFG-IFATVFGALALGFTPKEAASIGIIGGADGPTAIYLTN 156 (375)
T ss_pred cCcccHHHHhccchhcccchhhcCcHH-----HHhhhHHHhc-hHHHHHHHHHhCCCHhhhhheeeeccCCCCceEEecc
Confidence 467778889999999999877655322 1111222222 2344556667788999999999887777877766554
Q ss_pred hcccccccchhHHHHH-----HHHHHHHHHHHHHHHHhhhccccc-cccccccccccccCCCccceeEEee
Q 047130 437 ISRNIESLTDQMFSFL-----TVEILVTAIIIPILVKFLYDPSRK-YAGYQKRNIMQHSKASGELRILACI 501 (815)
Q Consensus 437 ~~~~~~~i~~~~~~~l-----v~~~ll~t~i~~~lv~~ly~p~~~-~~~~~~r~i~~~~~~~~elrILv~i 501 (815)
. +.++....+ -.|.+ .-++.||+.|.+-.+++| .+-.|-|++ ....||+.|+
T Consensus 157 ~------LAP~Ll~~iAvAAYSYMAL-VPiIQPpimkaLTt~~ERkIrM~qlR~V------sk~EkIlFPi 214 (375)
T COG1883 157 K------LAPELLGAIAVAAYSYMAL-VPIIQPPIMKALTTKEERKIRMTQLRTV------SKREKILFPI 214 (375)
T ss_pred c------cCHHHHHHHHHHHHHHHHH-hhhcccHHHHHhcCHHHHHhhhhccccc------cchhhhhhhH
Confidence 2 333332222 12222 256789999987766544 333344443 3344777775
No 131
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=73.79 E-value=15 Score=40.68 Aligned_cols=118 Identities=8% Similarity=0.037 Sum_probs=65.6
Q ss_pred hHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHH-HHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhh-HHH
Q 047130 355 MVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAV-VVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGI-VEI 432 (815)
Q Consensus 355 ~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~-~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~-v~l 432 (815)
...+.|+-.||+.+|+.-++..+....... .....+.. .....-......+.+.+.++.-++..|-+--.-|+ .+.
T Consensus 66 ~l~~~fmliFFttiglsa~~~~lkkgGk~l--~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaA 143 (404)
T COG0786 66 SLQDVFMLIFFATIGLSASFKLLKKGGKKL--AIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAA 143 (404)
T ss_pred ccccHHHHHHHHHhccccchhHHHhcChhH--HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCchHH
Confidence 346889999999999999998887652111 11111111 12334444444455667776666555332222222 234
Q ss_pred HHHhhcccccccchhH--HHHHHHHHHHHHHHHHHHHHhhhccc
Q 047130 433 STYNISRNIESLTDQM--FSFLTVEILVTAIIIPILVKFLYDPS 474 (815)
Q Consensus 433 i~~~~~~~~~~i~~~~--~~~lv~~~ll~t~i~~~lv~~ly~p~ 474 (815)
+......+.|.-+... .+...+-.+.-.++++|+.+|+.|+.
T Consensus 144 A~~~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~k~ 187 (404)
T COG0786 144 AWGPTFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWLIKKN 187 (404)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHHhc
Confidence 4555666666544332 22233344444567889999988654
No 132
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=72.79 E-value=1.1 Score=50.40 Aligned_cols=111 Identities=14% Similarity=0.214 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCch--hHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHH
Q 047130 311 MLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLG--SALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKST 388 (815)
Q Consensus 311 ~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~--~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~ 388 (815)
+.++....+.+.++++..+|-.++|+++...+ +. +.-.+.++.+ ..+.+++.....|.++|...+..... ..
T Consensus 6 ~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~-~~~~~~~~~~~~~l-~~i~l~~llF~~G~~~d~~~l~~~~~----~~ 79 (380)
T PF00999_consen 6 LLAFVAGILFRRLGIPSIIGYILVGIVLGPSG-LGLLEPDNPSFELL-AEIGLAFLLFEAGLELDIKELRRNWR----RA 79 (380)
T ss_dssp -------------------------------------------S-SS-HHHHS--SSHHHHTTGGGG-------------
T ss_pred ehHHHHHHHHHHhCCCHHHHHHHheeehhhhh-hhhccchhhHHHHH-HHHHHHHHHHHHHHhhcccccccccc----cc
Confidence 33444555788899999999999999998873 22 1112344544 57778888888999999998875521 23
Q ss_pred HHHHHHHHHHHHHH-HHHhhh---hcCCChHHHHHHHHHHhhh
Q 047130 389 AVIVAVVVLAKVAT-TMIPPL---YCKVPKRDAFALALIMSTK 427 (815)
Q Consensus 389 ~~i~~~~~~~K~i~-~~l~~~---~~~~~~~~~~~lgl~m~~k 427 (815)
....+..++.-++. ++.... ..++++.+++.+|..+++-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~t 122 (380)
T PF00999_consen 80 LALGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSAT 122 (380)
T ss_dssp ----------------------------------TTHHHHTT-
T ss_pred cccccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcc
Confidence 33333334334444 334442 4688999999888877644
No 133
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=71.57 E-value=15 Score=39.20 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCC-CCc--hhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccch
Q 047130 306 IHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAG-PPL--GSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDD 382 (815)
Q Consensus 306 ~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~-~~~--~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~ 382 (815)
...-+.++|+.+.+++.+.+++..|-.++|.+.... |.+ .+.+...+.++. + -+....+|+++.+.++.....
T Consensus 11 iv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelG--V--iLLmFgvGLhfslkdLLavk~ 86 (408)
T COG4651 11 IVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELG--V--ILLMFGVGLHFSLKDLLAVKA 86 (408)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhh--H--HHHHHhcchheeHHHHhhHHH
Confidence 345567888999999999999999999999988743 323 244555665553 2 234456799999888776544
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHH
Q 047130 383 NLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVE 431 (815)
Q Consensus 383 ~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~ 431 (815)
|.. ...+.- +..-..-.+..++..++++...+..|+.++.-..+-
T Consensus 87 iAi-pgAl~q---ia~at~lg~gL~~~lgws~~~glvfGlaLS~aSTVv 131 (408)
T COG4651 87 IAI-PGALAQ---IALATLLGMGLSSLLGWSFGTGIVFGLALSVASTVV 131 (408)
T ss_pred Hhc-chHHHH---HHHHHHHHhHHHHHcCCCcccceeeeehhhhHHHHH
Confidence 321 011111 111111223335566888888888888877666553
No 134
>COG2431 Predicted membrane protein [Function unknown]
Probab=69.14 E-value=70 Score=33.91 Aligned_cols=76 Identities=24% Similarity=0.338 Sum_probs=48.7
Q ss_pred hhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccC---hh--HHHhcchhhHHHHHHHH
Q 047130 99 MIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMD---VS--MIQKTGKKSLFTGLLTL 173 (815)
Q Consensus 99 ~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d---~~--~l~~~~k~~~~i~~~~~ 173 (815)
.+.+..+.|+++|-.. +.. ....+...+..+.+++|.+|.++. .. +. .-.|+....++...
T Consensus 108 k~~~~vl~g~~~G~l~-~~~------------~~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~-~Lnk~gl~l~~i~i 173 (297)
T COG2431 108 KLLGVVLLGLALGLLT-GSF------------LNFPENASEYLLYLLLFLIGIQLGNSGISLRQV-LLNKRGLILAFITL 173 (297)
T ss_pred HHHHHHHHHHHHHHHh-ccc------------ccCchhHHHHHHHHHHHHHHHHhccccchhhhH-HhccchHHHHHHHH
Confidence 5667777888877422 111 112456778999999999999887 22 22 22367777777766
Q ss_pred HHHHHHHHHHHHHHH
Q 047130 174 LIPFLLGAAALEKMS 188 (815)
Q Consensus 174 ~ip~~~~~~~~~~l~ 188 (815)
+-..+.|.+.++++.
T Consensus 174 lssliGG~iaa~~l~ 188 (297)
T COG2431 174 LSSLIGGLIAAFLLD 188 (297)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666666666665554
No 135
>PRK12342 hypothetical protein; Provisional
Probab=69.01 E-value=8.1 Score=40.82 Aligned_cols=105 Identities=15% Similarity=0.090 Sum_probs=60.2
Q ss_pred EEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccccchhhhhHHHHHHHhcccCCCCC-CEEEEEEEecCcHHH
Q 047130 670 MIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQ-RVKYVVEMVNEGQET 748 (815)
Q Consensus 670 ~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~-~v~y~e~~V~~g~~~ 748 (815)
+.+.=.|.|+-|++.|.|+.+ .+.++|++.+=++... +. +.+++.-.. +.+ -+...+... .|.|+
T Consensus 29 ~~~~iNp~D~~AlE~AlrLk~-~g~~Vtvls~Gp~~a~------~~----~l~r~alam--GaD~avli~d~~~-~g~D~ 94 (254)
T PRK12342 29 AEAKISQFDLNAIEAASQLAT-DGDEIAALTVGGSLLQ------NS----KVRKDVLSR--GPHSLYLVQDAQL-EHALP 94 (254)
T ss_pred CCccCChhhHHHHHHHHHHhh-cCCEEEEEEeCCChHh------HH----HHHHHHHHc--CCCEEEEEecCcc-CCCCH
Confidence 345557899999999999995 6889999998655110 11 122322211 222 333433322 23444
Q ss_pred H-------HHHHhhCCCccEEEEcccCCCC-----CccccCCCcCCCCCccccchhh
Q 047130 749 L-------AKIQSVVPKYDLVIVGRRDNTE-----TPQTSGLDRCREFPELGIVGNC 793 (815)
Q Consensus 749 ~-------~~i~~~~~~~DLiivG~~~~~~-----~~~~~gL~~w~e~~eLG~iGd~ 793 (815)
. ++++.. +||||+-|+..-.. .|++.++..| |-+..+-++
T Consensus 95 ~ata~~La~~i~~~--~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~---P~vt~v~~~ 146 (254)
T PRK12342 95 LDTAKALAAAIEKI--GFDLLLFGEGSGDLYAQQVGLLLGELLQL---PVINAVSKI 146 (254)
T ss_pred HHHHHHHHHHHHHh--CCCEEEEcCCcccCCCCCHHHHHHHHhCC---CcEeeEEEE
Confidence 3 334542 49999999987543 3555555555 555555443
No 136
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=67.37 E-value=13 Score=40.38 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=33.4
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCcc
Q 047130 666 FRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDE 707 (815)
Q Consensus 666 ~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~ 707 (815)
.++++.|.||+|+--.|.+|++.....+..+.++++.+...+
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~F 69 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKF 69 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCC
Confidence 489999999999999999998765544667788988876433
No 137
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=66.83 E-value=22 Score=37.66 Aligned_cols=109 Identities=15% Similarity=0.086 Sum_probs=60.6
Q ss_pred EEecCCccHHHHHHHHHHHhhCCC-eEEEEEEeeecCccccccchhhhhHHHHHHHhcccCCCCCCEE-EEEEEecCcHH
Q 047130 670 MIFLGGSDDREALTLAKRMSQNTS-INLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVK-YVVEMVNEGQE 747 (815)
Q Consensus 670 ~~f~gg~DdreAL~~a~rma~~~~-v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~-y~e~~V~~g~~ 747 (815)
+.+.=.|.|+-|++.|.|+.++.+ .++|++.+=+++.. +++.+++.-.. +.++.. ..+. .-.|.|
T Consensus 30 ~~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~----------~~~~lr~aLAm--GaD~avli~d~-~~~g~D 96 (256)
T PRK03359 30 ADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALT----------NAKGRKDVLSR--GPDELIVVIDD-QFEQAL 96 (256)
T ss_pred CccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchh----------hHHHHHHHHHc--CCCEEEEEecC-cccCcC
Confidence 344556899999999999999764 89999998655211 11223332211 223333 2222 112333
Q ss_pred HHH-------HHHhhCCCccEEEEcccCCCC-Cccc-cCCCcCCCCCccccchhh
Q 047130 748 TLA-------KIQSVVPKYDLVIVGRRDNTE-TPQT-SGLDRCREFPELGIVGNC 793 (815)
Q Consensus 748 ~~~-------~i~~~~~~~DLiivG~~~~~~-~~~~-~gL~~w~e~~eLG~iGd~ 793 (815)
+.. ++++. +||||+-|++.-.. +-++ .-+++|-..|-+..+-++
T Consensus 97 ~~~tA~~La~ai~~~--~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~l 149 (256)
T PRK03359 97 PQQTASALAAAAQKA--GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSKI 149 (256)
T ss_pred HHHHHHHHHHHHHHh--CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEEE
Confidence 333 24442 49999999986432 2111 113444455777766664
No 138
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=65.67 E-value=1.4e+02 Score=30.67 Aligned_cols=79 Identities=18% Similarity=0.211 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHH
Q 047130 387 STAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPIL 466 (815)
Q Consensus 387 ~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~l 466 (815)
.+..-++++.+.-++.+++.+++++.+..-. . .+.+|....=+-..+..+.|-..+-.-..++++-++-..++|++
T Consensus 79 ~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~--~--Sl~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g~~l 154 (215)
T PF04172_consen 79 PILVGVLVGSLVSIFSAVLLARLLGLSPEII--L--SLAPKSVTTPIAIEISEQIGGIPSLTAVFVVITGILGAVLGPPL 154 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcCHHHH--H--HHHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhHHHH
Confidence 3455555566667778888888888866433 3 35789888877777777777665555555556666666677777
Q ss_pred HHh
Q 047130 467 VKF 469 (815)
Q Consensus 467 v~~ 469 (815)
.++
T Consensus 155 lk~ 157 (215)
T PF04172_consen 155 LKL 157 (215)
T ss_pred HhH
Confidence 776
No 139
>COG3329 Predicted permease [General function prediction only]
Probab=65.02 E-value=1.2e+02 Score=32.64 Aligned_cols=122 Identities=15% Similarity=0.057 Sum_probs=66.7
Q ss_pred chhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHH
Q 047130 325 QHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTM 404 (815)
Q Consensus 325 ~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~ 404 (815)
+++.+.-|+.|++.+-.. -.-++-+.+-...+-.++--.=..-|+.+.-+.+... .. .+++-+.+.++.-++..+
T Consensus 16 ~sP~llFf~~Gmlia~~k-sdl~iP~~i~~~lslyLL~aIG~kGGveir~snl~a~--v~--~~~~~~aL~~li~~ia~f 90 (372)
T COG3329 16 LSPTLLFFILGMLIAAFK-SDLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLTAM--VL--PVALGVALGFLIVFIAYF 90 (372)
T ss_pred ccchHHHHHHHHHHHHHh-ccccCchHHHHHHHHHHHHHHhcccceeeecCCcchh--HH--HHHHHHHHHHHHHHHHHH
Confidence 478888888888877542 0111112121111112222222233444544444432 11 234444455566777888
Q ss_pred HhhhhcCCChHHHHHHHHHHhhhhhHHHHHHhhcccccccchhHHHH
Q 047130 405 IPPLYCKVPKRDAFALALIMSTKGIVEISTYNISRNIESLTDQMFSF 451 (815)
Q Consensus 405 l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~~~~~~~~i~~~~~~~ 451 (815)
+..++.+++..|+...+-..+.-..+.++.+...++.--+..+-|..
T Consensus 91 ~l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~ 137 (372)
T COG3329 91 LLRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMP 137 (372)
T ss_pred HHHHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHH
Confidence 88889899999999998766655555555555555544455555543
No 140
>PRK09903 putative transporter YfdV; Provisional
Probab=63.80 E-value=1e+02 Score=33.52 Aligned_cols=110 Identities=13% Similarity=0.124 Sum_probs=63.8
Q ss_pred hCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhcchhhHHHHHHH-H
Q 047130 95 FGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLT-L 173 (815)
Q Consensus 95 l~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~-~ 173 (815)
++-|.+++.+++ +++.- +|. -.|..-.+.++.+++...-+-||..|..++...++.. ++.+...+.- .
T Consensus 171 ~~nP~iia~~~g-l~~~l--~~i-------~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli 239 (314)
T PRK09903 171 AKEPVVWAPVLA-TILVL--VGV-------KIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLI 239 (314)
T ss_pred HhchHHHHHHHH-HHHHH--cCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHH
Confidence 556888887665 44332 332 1233447789999999999999999998877655433 3333322222 3
Q ss_pred HHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhh
Q 047130 174 LIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLR 224 (815)
Q Consensus 174 ~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ 224 (815)
+.|++. +.....+ +.+ ....-....++....++.+.++.+.-
T Consensus 240 ~~P~i~-~~~~~~~----~l~----~~~~~v~vl~aa~P~a~~~~i~A~~y 281 (314)
T PRK09903 240 LMPLAL-LLVGMAC----HLN----SEHLQMMVLAGALPPAFSGIIIASRF 281 (314)
T ss_pred HHHHHH-HHHHHHc----CCC----cHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 356543 2222222 211 22334566667777777777776643
No 141
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=62.93 E-value=97 Score=34.21 Aligned_cols=114 Identities=16% Similarity=0.230 Sum_probs=63.9
Q ss_pred CCCCCCcchHHHHHH-HHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhccccc--ccccccccccccCCCchhHHHHHHH
Q 047130 63 GNHPWDASLPRLELQ-IIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAI--PGLNRYYKHVLFSDTSLGTLDLVAT 139 (815)
Q Consensus 63 g~~pl~~~lp~~ll~-i~lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~--lg~~~~~~~~lfp~~~~~~l~~la~ 139 (815)
++.+-+-++|..... +.+.+..+.+.+.+.|++|+|.- ++++.++++-.+ .+..+ .+.=..+..
T Consensus 174 ~~~~~~i~~~~~~~~~~~~l~~~~~~~g~l~~~lr~Pa~--~ll~~l~l~a~v~~~~~~~-----------~~lP~wl~~ 240 (352)
T COG3180 174 GSGTPEIWLPPVDWLILLLLILAALLGGLLGKLLRFPAP--TLLGPLLLGAIVHFGGGIT-----------IQLPAWLLA 240 (352)
T ss_pred CCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHhhccccee-----------eeCCHHHHH
Confidence 344333344444444 66667777788889999998852 333333333211 11111 111133446
Q ss_pred HHHHHHHHHhhcccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047130 140 FGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRI 190 (815)
Q Consensus 140 lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~ 190 (815)
++..++--.+|.++|-..++...|-...+ +.+.+.=++.+..+++++.+.
T Consensus 241 va~~~iG~~IG~~f~~~~l~~~~r~~~~~-~v~ii~l~~~~~~~a~ll~~~ 290 (352)
T COG3180 241 VAQALIGALIGSRFDRSILREAKRLLPAI-LVSIIALMAIAAGMAGLLSWL 290 (352)
T ss_pred HHHHHHHHHHcccccHHHHHHhHhhcchH-HHHHHHHHHHHHHHHHHHHHh
Confidence 77788888999999999887776655443 333333334445555555554
No 142
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=62.46 E-value=75 Score=35.98 Aligned_cols=106 Identities=15% Similarity=0.215 Sum_probs=62.5
Q ss_pred HHHHHhCchhhHHHHHHHhhcCCCCCch-hHH-HHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHH
Q 047130 318 YISDLFGQHVYFGPFVFGLAVPAGPPLG-SAL-VEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVV 395 (815)
Q Consensus 318 ~i~e~~G~~~~lGafvaGl~~~~~~~~~-~~l-~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~ 395 (815)
.++..+|....+=-...|++....+ .+ -+. -..+..++..+.+.+...-.|++++++.+... .|. .+.+..+-.
T Consensus 24 ~~ssrfGvP~LllFl~iGm~aG~dG-lg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a-~~p--alsLATlGV 99 (574)
T COG3263 24 LISSRFGVPLLLLFLSIGMLAGVDG-LGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVA-AGP--ALSLATLGV 99 (574)
T ss_pred HHHHHcCchHHHHHHHHHHHcCCCc-ccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHH-hhh--hHHHHHHHH
Confidence 3334455554444445555555432 11 110 02233445566666667778999999887654 222 233334444
Q ss_pred HHHHHHHHHHhhhhcCCChHHHHHHHHHHhhh
Q 047130 396 VLAKVATTMIPPLYCKVPKRDAFALALIMSTK 427 (815)
Q Consensus 396 ~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~k 427 (815)
++.-.+....+.+.++.+|-|++.+|-+.+.-
T Consensus 100 l~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgST 131 (574)
T COG3263 100 LITSGLTGVAAAYLLNLDWLEGLLIGAIVGST 131 (574)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHhhccc
Confidence 45566666777888999999999999875544
No 143
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=61.33 E-value=94 Score=34.35 Aligned_cols=95 Identities=20% Similarity=0.071 Sum_probs=53.4
Q ss_pred HHHHhhh-CCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcc-cChhHHHhcc-hhh
Q 047130 89 HFVLKRF-GIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVK-MDVSMIQKTG-KKS 165 (815)
Q Consensus 89 ~~llkrl-~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle-~d~~~l~~~~-k~~ 165 (815)
+.+++.+ ++|..+-.|+.|+++-- +|..|+-.+ .....+-+.+..--...+++-+|+. +|++++.+.. .+-
T Consensus 195 g~l~~~~~~Ih~~v~mII~~vi~k~--~gllp~~i~----~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~ 268 (347)
T TIGR00783 195 GGLLKSFPGIPAYAFMILIAAALKA--FGLVPKEIE----EGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQF 268 (347)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHH--hCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhH
Confidence 3444444 68999999999998763 555542100 0011111222222233344447886 8999998877 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047130 166 LFTGLLTLLIPFLLGAAALEKMSR 189 (815)
Q Consensus 166 ~~i~~~~~~ip~~~~~~~~~~l~~ 189 (815)
+.+.+.+++.-.+.++.++.+++.
T Consensus 269 vviiv~~Vlg~ii~s~lvGKllG~ 292 (347)
T TIGR00783 269 VVICLSVVVAMILGGAFLGKLMGM 292 (347)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCC
Confidence 445455544444555566666655
No 144
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=60.08 E-value=17 Score=39.21 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=32.9
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCcc
Q 047130 667 RVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDE 707 (815)
Q Consensus 667 ~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~ 707 (815)
+.+++|.||+|+--.|.++.+.....+..+.++++.+.-.+
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F 61 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKF 61 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCC
Confidence 56788999999999999998876544677889999876444
No 145
>COG2985 Predicted permease [General function prediction only]
Probab=58.96 E-value=32 Score=39.23 Aligned_cols=110 Identities=18% Similarity=0.213 Sum_probs=67.5
Q ss_pred CChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhH---HHhcchhhHHHHHHHH
Q 047130 97 IPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSM---IQKTGKKSLFTGLLTL 173 (815)
Q Consensus 97 ~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~---l~~~~k~~~~i~~~~~ 173 (815)
+-..-|.+++|++||- +|.+... .|..| ......+.++|+++||=-+|++---+. +-..+-.....|..-.
T Consensus 395 LG~aGGpLivaLiLG~--ig~iGpl-~w~mP---~~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit 468 (544)
T COG2985 395 LGNAGGPLIVALILGF--IGAIGPL-TWFMP---PGALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVT 468 (544)
T ss_pred ecccccHHHHHHHHHH--hcccCce-EEEcC---hhHHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHH
Confidence 3345677788888773 4444321 12233 456788999999987777776544333 3344555555666666
Q ss_pred HHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHH
Q 047130 174 LIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACL 219 (815)
Q Consensus 174 ~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~i 219 (815)
++|.+.+++++.++.+. +| ..++=+++-+.|++|.++-.
T Consensus 469 ~vp~i~~~llg~~v~km------n~-~~l~G~laGs~T~ppaLa~a 507 (544)
T COG2985 469 LVPVIIVFLLGRYVLKM------NW-LLLCGALAGSMTDPPALAFA 507 (544)
T ss_pred HHHHHHHHHHHHHHHhc------cH-HHHhhHHhcCCCChHHHHHH
Confidence 77888888888777662 23 22344455688998877544
No 146
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=56.91 E-value=1.1e+02 Score=34.28 Aligned_cols=98 Identities=12% Similarity=0.191 Sum_probs=56.4
Q ss_pred hhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-hHHHHHH-HHHHh--h
Q 047130 351 KLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVP-KRDAFAL-ALIMS--T 426 (815)
Q Consensus 351 kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~-~~~~~~l-gl~m~--~ 426 (815)
.+.+.++..++|+-....=++.|++.+... +. ..+...+++.++-++++.+..+.++.. -.|...+ |.+.. .
T Consensus 51 ~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~-g~---~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyi 126 (378)
T PF05684_consen 51 PVYDFVWTYLVPLAIPLLLLSADLRRILRL-GG---RLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYI 126 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccHHHHHHh-hH---HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhccc
Confidence 345556677777766666688999988755 32 455666666677777777777766644 2333333 32222 2
Q ss_pred hhhHHHHHHhhcccccccchhHHHHHHHH
Q 047130 427 KGIVEISTYNISRNIESLTDQMFSFLTVE 455 (815)
Q Consensus 427 kG~v~li~~~~~~~~~~i~~~~~~~lv~~ 455 (815)
-|.+-++.....++. +++.++..+.+
T Consensus 127 GGs~N~~Av~~al~~---~~~~~~a~~aa 152 (378)
T PF05684_consen 127 GGSVNFVAVAEALGV---SDSLFAAALAA 152 (378)
T ss_pred CchhHHHHHHHHHCC---CHHHHHHHHHH
Confidence 366665555444432 45555554433
No 147
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=55.29 E-value=81 Score=30.92 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=31.9
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCC--CeEEEEEEeeec
Q 047130 667 RVAMIFLGGSDDREALTLAKRMSQNT--SINLTVFRFIVK 704 (815)
Q Consensus 667 ~I~~~f~gg~DdreAL~~a~rma~~~--~v~ltvl~~~~~ 704 (815)
+|++.+.||.|.--.+.++.+..++. +.+++.+++...
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~ 40 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEG 40 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECC
Confidence 58899999999999998888877655 788888888754
No 148
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=53.33 E-value=41 Score=32.69 Aligned_cols=92 Identities=10% Similarity=0.003 Sum_probs=55.4
Q ss_pred hhHHHHHHHhhcCCCC---CchhHHHHhhhhhHHHhhHHHHHHhhcccCChh---hhcccchhHHHHHHHHHHHHHHHHH
Q 047130 327 VYFGPFVFGLAVPAGP---PLGSALVEKLDPMVSGLFIPLVVTSASMRTNLS---DIKLLDDNLAKSTAVIVAVVVLAKV 400 (815)
Q Consensus 327 ~~lGafvaGl~~~~~~---~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~---~l~~~~~~~~~~~~~i~~~~~~~K~ 400 (815)
..-|+++.|+++.+-. |....+......+..++-+-+|...+|++.=.. .+.....+. ......++.++.-.
T Consensus 23 ~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~--~~~~g~~v~~~~~~ 100 (154)
T TIGR01625 23 NAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLL--RINGGALITVVPTL 100 (154)
T ss_pred ccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHH--HHHHHHHHHHHHHH
Confidence 3457788888777643 233344445566677888999999999998754 343332122 22233333444446
Q ss_pred HHHHHhhhhcCCChHHHHHHHH
Q 047130 401 ATTMIPPLYCKVPKRDAFALAL 422 (815)
Q Consensus 401 i~~~l~~~~~~~~~~~~~~lgl 422 (815)
+..++..+++|+++-. .+|.
T Consensus 101 ~~~~~~~~~~~~~~~~--~~G~ 120 (154)
T TIGR01625 101 LVAVALIKLLRINYAL--TAGM 120 (154)
T ss_pred HHHHHHHHHhCCCHHH--HHHH
Confidence 6667777888998753 4444
No 149
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=53.28 E-value=3.6e+02 Score=29.99 Aligned_cols=88 Identities=14% Similarity=0.079 Sum_probs=50.8
Q ss_pred hhhHHHHHHHhhcCCCCCch-----hHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHH
Q 047130 326 HVYFGPFVFGLAVPAGPPLG-----SALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKV 400 (815)
Q Consensus 326 ~~~lGafvaGl~~~~~~~~~-----~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~ 400 (815)
++.+=+.++|+++.-.++.. ..+.+-++.+ .+...|+-.+..|..+..........+. .....+++.++.-.
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~l-g~~~~pl~l~~lG~~l~~~~~~~~~~~~--~~~~~~~~rlii~P 320 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYL-GAAAVPLALFVLGASLARGPRKSALGWK--PSIIAVLVRLIILP 320 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCcccchhhH--HHHHHHHHHHHHHH
Confidence 45555555565555443322 3445555555 5788999988899887654333221221 23334556666666
Q ss_pred HHHHHhhhhcCCChHH
Q 047130 401 ATTMIPPLYCKVPKRD 416 (815)
Q Consensus 401 i~~~l~~~~~~~~~~~ 416 (815)
+.++...++++++...
T Consensus 321 ~i~~~~~~~~~l~~~~ 336 (385)
T PF03547_consen 321 LIGIGIVFLLGLDGDM 336 (385)
T ss_pred HHHHHHHHHHCCCHHH
Confidence 6777777777765543
No 150
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=51.04 E-value=3e+02 Score=28.48 Aligned_cols=94 Identities=14% Similarity=0.120 Sum_probs=56.4
Q ss_pred HHHHHHHhhhC----CChhHHHHHhhhhcccccccc-cccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHh
Q 047130 86 HACHFVLKRFG----IPMIASQITGGLILGQAIPGL-NRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQK 160 (815)
Q Consensus 86 ~~~~~llkrl~----~P~iv~~IlaGillGP~~lg~-~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~ 160 (815)
.+..++.||++ .|-+++.++...++=. +|. .+.+. ++.++++.+ +|-.-.-|.+-+-=.++.+||
T Consensus 19 ~~a~~l~~r~~~~~l~PlLv~~~~li~~L~~--~~i~Y~~Y~------~g~~~i~~l--LgPAtVAlAvPLYkq~~~ik~ 88 (230)
T COG1346 19 FAAKRLYKRTKSPFLNPLLVATVLLIAFLLL--FGISYEDYM------KGGQWINFL--LGPATVALAVPLYKQRHLIKR 88 (230)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHHH--cCCCHHHHh------cccHHHHHH--HHHHHHHHhhHHHHHHHHHHH
Confidence 34566667776 3555555554444331 221 11221 344555554 333444556666678889999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047130 161 TGKKSLFTGLLTLLIPFLLGAAALEKMSR 189 (815)
Q Consensus 161 ~~k~~~~i~~~~~~ip~~~~~~~~~~l~~ 189 (815)
+++......+.+.++.++.+..++.+++.
T Consensus 89 ~w~~I~~g~~vGs~~ai~s~~llak~~g~ 117 (230)
T COG1346 89 HWKPILAGVLVGSVVAIISGVLLAKLFGL 117 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99998887777777777777777766653
No 151
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=50.43 E-value=38 Score=35.85 Aligned_cols=110 Identities=19% Similarity=0.154 Sum_probs=60.2
Q ss_pred EEecCCccHHHHHHHHHHHhh-CCCeEEEEEEeeecCccccccchhhhhHHHHHHHhcccCCCCCCEE-EEEEEecCcHH
Q 047130 670 MIFLGGSDDREALTLAKRMSQ-NTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVK-YVVEMVNEGQE 747 (815)
Q Consensus 670 ~~f~gg~DdreAL~~a~rma~-~~~v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~-y~e~~V~~g~~ 747 (815)
+++.=.+.|+-|++.|.|+.+ ..+.+++++.+=++.. + +.+.+.-. .+.++.+ ..+.. ..+.|
T Consensus 31 v~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a-----------~-~~lr~aLA--mGaDraili~d~~-~~~~d 95 (260)
T COG2086 31 VPLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQA-----------E-EALREALA--MGADRAILITDRA-FAGAD 95 (260)
T ss_pred CCcccChhhHHHHHHHHHhhccCCCceEEEEEecchhh-----------H-HHHHHHHh--cCCCeEEEEeccc-ccCcc
Confidence 344446889999999999999 7999999999865511 1 22222111 1333333 33222 23444
Q ss_pred HHHH---HHhh--CCCccEEEEcccCCCCC-cc-ccCCCcCCCCCccccchhhh
Q 047130 748 TLAK---IQSV--VPKYDLVIVGRRDNTET-PQ-TSGLDRCREFPELGIVGNCL 794 (815)
Q Consensus 748 ~~~~---i~~~--~~~~DLiivG~~~~~~~-~~-~~gL~~w~e~~eLG~iGd~l 794 (815)
.... +.+. ..++|||+.|...-... -+ =..+++|-..|-++-+-++-
T Consensus 96 ~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~ 149 (260)
T COG2086 96 PLATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIE 149 (260)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEEEE
Confidence 4433 3222 23469999999864322 11 12223443336665554443
No 152
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=50.36 E-value=2.7e+02 Score=34.52 Aligned_cols=65 Identities=17% Similarity=0.069 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhcccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhc
Q 047130 139 TFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLS 211 (815)
Q Consensus 139 ~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~T 211 (815)
++-+-++....|++.|+..+.+ +.............-++.+...+.+. + .++..++.+|.+++.=
T Consensus 313 ~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~-k------~p~~~~l~l~~lm~~k 377 (769)
T KOG1650|consen 313 GLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYC-K------LPLRDSLALGLLMSTK 377 (769)
T ss_pred HHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh-c------CchhHHHHHHHHHHhh
Confidence 4556667788999999999998 22222222223333344444444432 2 1467777777777653
No 153
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=49.98 E-value=3.4e+02 Score=28.77 Aligned_cols=44 Identities=23% Similarity=0.244 Sum_probs=34.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhcc
Q 047130 66 PWDASLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILG 111 (815)
Q Consensus 66 pl~~~lp~~ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGillG 111 (815)
.+.+=+|+.+-...-++..++++.++++ +.|..+-....|.++|
T Consensus 53 ~~~fL~~l~~G~~~gi~~~s~~i~~ll~--~yp~~t~~fF~GLIlg 96 (257)
T PF04018_consen 53 NLKFLLPLGIGILIGILLFSKVISYLLE--NYPIPTYSFFFGLILG 96 (257)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHH
Confidence 3556667777777888888888888888 5677888888888887
No 154
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=49.78 E-value=56 Score=33.80 Aligned_cols=64 Identities=13% Similarity=0.101 Sum_probs=50.4
Q ss_pred EEEEEEEecCCC-ChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEecc
Q 047130 578 CVYPFTAISPPK-LMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDR 649 (815)
Q Consensus 578 ~v~~~~~vs~~~-~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdr 649 (815)
...++|-++|.+ ...++|.+.+.+-..|.|++| |+ ..-+.....++.+++-++.+-||-.+...
T Consensus 15 ~~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIG--GS------~gvt~~~~~~~v~~ik~~~~lPvilfP~~ 79 (240)
T COG1646 15 GKRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIG--GS------DGVTEENVDNVVEAIKERTDLPVILFPGS 79 (240)
T ss_pred cceEEEEeCcccccccHHHHHHHHHcCCCEEEEC--Cc------ccccHHHHHHHHHHHHhhcCCCEEEecCC
Confidence 345778899999 899999999999999999999 22 22233347888888888999998887644
No 155
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=49.04 E-value=28 Score=37.90 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=34.8
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccc
Q 047130 666 FRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEM 708 (815)
Q Consensus 666 ~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~ 708 (815)
.++++.|.||+|+--.|.++.+.....+..+.++++.+...|.
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~Fp 80 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKFR 80 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCCH
Confidence 4678999999999999999998865555677899988765554
No 156
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=48.90 E-value=26 Score=34.06 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=24.7
Q ss_pred ccHHHHHHHHHHHhhCCCeEEEEEEee
Q 047130 676 SDDREALTLAKRMSQNTSINLTVFRFI 702 (815)
Q Consensus 676 ~DdreAL~~a~rma~~~~v~ltvl~~~ 702 (815)
+.|+|+++.|+++++..+.+++++-+-
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~G 41 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVLG 41 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEe
Confidence 789999999999999999999988775
No 157
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=48.27 E-value=30 Score=39.80 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=39.1
Q ss_pred hhHHHHHHHHhcCCCEEEEc---CCCccccCCccccCChhhHHHHHHHhhcCCCceEEEeccCC
Q 047130 591 MHEDVCMLALDKLASIVVLP---FHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGR 651 (815)
Q Consensus 591 m~~dI~~~A~e~~~dLIIlp---~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdrg~ 651 (815)
-+++||.+|+|+++|+|++| ||....... .-+..++.+-+.-+..-||..=++-|.+.
T Consensus 40 tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~---~L~~~i~lLRryClgdkP~~le~lSD~s~ 100 (646)
T KOG2310|consen 40 TFEEILEIAQENDVDMILLGGDLFHENKPSRK---TLHRCLELLRRYCLGDKPVQLEILSDQSV 100 (646)
T ss_pred HHHHHHHHHHhcCCcEEEecCcccccCCccHH---HHHHHHHHHHHHccCCCceeeEEecccce
Confidence 47899999999999999999 443322111 11223444445556677999989888764
No 158
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=48.14 E-value=2.2e+02 Score=32.60 Aligned_cols=35 Identities=17% Similarity=0.330 Sum_probs=22.2
Q ss_pred ChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047130 154 DVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMS 188 (815)
Q Consensus 154 d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~ 188 (815)
|.+.+.|.+.|.+..-+....+..++|..++..+.
T Consensus 66 ~~~~lg~i~~~~~~~f~~tt~iA~~lgl~~~~l~~ 100 (428)
T PRK01663 66 DMKKVGRVGGKALLYFEIVSTIALIIGLIVVNVVQ 100 (428)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66777777777766555555566666666555544
No 159
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=47.25 E-value=1.5e+02 Score=31.96 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=50.4
Q ss_pred hHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhcchhhHHHHHHHHHHHHHH
Q 047130 100 IASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLL 179 (815)
Q Consensus 100 iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~ 179 (815)
.+-.++.|+++|+. .+++.+.+-| . ..+-..|+-|..|-.+|++.+.+.+-.-..+|+...+++...
T Consensus 174 ~ilPlliG~ilGNL----D~~~r~fl~~-~--------~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~ 240 (314)
T TIGR00793 174 AVLPFLVGFALGNL----DPELRDFFSK-A--------VQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIP 240 (314)
T ss_pred HHHHHHHHHHHhcC----CHHHHHHhcc-C--------CCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 34456788988862 2333332222 1 123356788999999999999999988888888777776666
Q ss_pred HHHHHHHH
Q 047130 180 GAAALEKM 187 (815)
Q Consensus 180 ~~~~~~~l 187 (815)
.+....++
T Consensus 241 ~~~~dr~~ 248 (314)
T TIGR00793 241 LILADKFI 248 (314)
T ss_pred HHHHHHHh
Confidence 55555544
No 160
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=46.69 E-value=72 Score=34.54 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=50.1
Q ss_pred hHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhcchhhHHHHHHHHHHHHHH
Q 047130 100 IASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLL 179 (815)
Q Consensus 100 iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~ 179 (815)
.+-.++.|+++|+. .+++.+.+-| -..+-..|+-|..|-.+|+..+.+.+-.-..+++..++++...
T Consensus 174 ~llP~iiG~iLGNL----D~~~r~fl~~---------~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~ 240 (314)
T PF03812_consen 174 ALLPIIIGMILGNL----DPDFRKFLAP---------GVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIP 240 (314)
T ss_pred HHHHHHHHHHHhcC----CHHHHHHHhc---------CCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 34456788988862 2333332222 2223356788999999999999999988888888777766655
Q ss_pred HHHHHHHH
Q 047130 180 GAAALEKM 187 (815)
Q Consensus 180 ~~~~~~~l 187 (815)
.+.+..++
T Consensus 241 ~~~~dr~i 248 (314)
T PF03812_consen 241 LYLADRLI 248 (314)
T ss_pred HHHHHHHH
Confidence 55554444
No 161
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=46.28 E-value=5.8e+02 Score=30.37 Aligned_cols=73 Identities=12% Similarity=0.034 Sum_probs=45.8
Q ss_pred HHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhh---------hcCCChHHHHHHHHHHhhh
Q 047130 357 SGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPL---------YCKVPKRDAFALALIMSTK 427 (815)
Q Consensus 357 ~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~---------~~~~~~~~~~~lgl~m~~k 427 (815)
..+++|....-.|+.+|...+..... .++.+.+++.+.-.+.+....+ ..++|+.+++.+|.++++-
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f~~n~~----~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaT 144 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNFFENLG----SILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAV 144 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCC
Confidence 45688888888899999988876522 2333333332222222222111 1357999999999999988
Q ss_pred hhHHHH
Q 047130 428 GIVEIS 433 (815)
Q Consensus 428 G~v~li 433 (815)
.-+...
T Consensus 145 DPVAVl 150 (559)
T TIGR00840 145 DPVAVL 150 (559)
T ss_pred chHHHH
Confidence 877655
No 162
>COG0679 Predicted permeases [General function prediction only]
Probab=45.64 E-value=4.3e+02 Score=28.70 Aligned_cols=135 Identities=10% Similarity=0.121 Sum_probs=77.2
Q ss_pred chhhHHHHHHHhhcCCC-CCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHH
Q 047130 325 QHVYFGPFVFGLAVPAG-PPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATT 403 (815)
Q Consensus 325 ~~~~lGafvaGl~~~~~-~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~ 403 (815)
.+|.+=|+++|+++... -++...+.+-++.+ .+...|+-.+..|+.++.......... .+......-.+...+..
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l-~~a~~pl~li~lG~~L~~~~~~~~~~~---~~~~~~~~kll~~Pl~~ 242 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISLPAPLDTAVDLL-ASAASPLALIALGLSLAFLKLKGSKPP---IILIALSLKLLLAPLVA 242 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHhhhhHHHHHHhhhcchhhhccccch---hHHHHHHHHHHHHHHHH
Confidence 35666666666666632 12333455555554 688999999999999998555443221 22333333466777888
Q ss_pred HHhhhhcCCChHHHHHHHHHH--hhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHH
Q 047130 404 MIPPLYCKVPKRDAFALALIM--STKGIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILV 467 (815)
Q Consensus 404 ~l~~~~~~~~~~~~~~lgl~m--~~kG~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv 467 (815)
++..+.++++..+... ..++ .|-+....+++. +.+.-.+..-+.+.++.+++.+..|.+.
T Consensus 243 ~~~~~~~~l~~~~~~v-~vl~~a~P~A~~~~v~a~---~~~~~~~laa~~i~ist~ls~~t~p~~~ 304 (311)
T COG0679 243 LLVAKLLGLSGLALQV-LVLLSAMPTAVNAYVLAR---QYGGDPRLAASTILLSTLLSLLTLPLLI 304 (311)
T ss_pred HHHHHHcCCChHHHHH-HHHHhhCcHHhHHHHHHH---HhCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887765522 2222 455555555444 3443344455555555555444343333
No 163
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=44.21 E-value=1e+02 Score=33.68 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=34.2
Q ss_pred HHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcccChhHHHhcchhhHHHHHHHHHHHHHHH
Q 047130 101 ASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLG 180 (815)
Q Consensus 101 v~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~~ 180 (815)
+|-++.|.+-||.....+..+...+| .=-+.+||...|++- .++++.-+|..+.+-..+++.|.+-+
T Consensus 184 lGgliIG~~~g~~g~~~i~pf~~~lF------------~G~L~lFLLeMGl~A-~~rL~~l~~~g~~li~Fgi~~Pli~a 250 (327)
T PF05982_consen 184 LGGLIIGFLAGPEGVESIKPFFVDLF------------KGVLCLFLLEMGLVA-ARRLRDLRKVGWFLIAFGILMPLINA 250 (327)
T ss_pred HHHHHHhheeCccchhhccchhhccH------------HHHHHHHHHHhhHHH-HHhhHHHHhhhHHHHHHHHHHHHHHH
Confidence 34445555556655444443333333 123566677777743 23344444444555566667777643
No 164
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=43.48 E-value=1.3e+02 Score=32.29 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=33.8
Q ss_pred cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeec
Q 047130 665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVK 704 (815)
Q Consensus 665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~ 704 (815)
.++|++.+.||+|.--+|...+++.++ .++.+++|+..
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~ 58 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHG 58 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCC
Confidence 369999999999999999999998888 89999998754
No 165
>COG2035 Predicted membrane protein [Function unknown]
Probab=43.29 E-value=4.4e+02 Score=28.12 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=34.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhcc--cccccccc
Q 047130 69 ASLPRLELQIIVAFAVTHACHFVLKRFGIPMIASQITGGLILG--QAIPGLNR 119 (815)
Q Consensus 69 ~~lp~~ll~i~lil~~~~~~~~llkrl~~P~iv~~IlaGillG--P~~lg~~~ 119 (815)
+=.|+..--+.-+..+++++.++++. .|..+---.+|.++| |+.++.++
T Consensus 57 fLi~l~~G~~~~i~~~a~ii~~ll~~--yp~~t~~fF~GlI~~sVp~llk~i~ 107 (276)
T COG2035 57 FLIPLGIGMLLGIFLFAKIIEYLLEN--YPVPTLAFFAGLILGSVPSLLKEIN 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455566666777788888888875 677777778999988 55566544
No 166
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=41.06 E-value=4.2e+02 Score=27.28 Aligned_cols=68 Identities=9% Similarity=0.074 Sum_probs=39.5
Q ss_pred HHhhcccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHH-hhccHHHHHHHHHHhh
Q 047130 147 FLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVH-SLSRFPSIACLVSDLR 224 (815)
Q Consensus 147 F~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~l-s~Ts~~vv~~iL~el~ 224 (815)
+-.-+-=..+.+||+++..+.--..+.++.+..+..++++++.. ..+..+.+- |+| .|+...+-+++|
T Consensus 62 LAvPLY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~---------~~~~~Sl~pkSVT-tpiAi~is~~iG 130 (215)
T PF04172_consen 62 LAVPLYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLS---------PEIILSLAPKSVT-TPIAIEISEQIG 130 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcC---------HHHHHHHHHHHhh-HHHHHHHHHHhC
Confidence 33344446778888888877766777777666666666655431 122222222 333 566666666655
No 167
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=40.37 E-value=65 Score=35.16 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=33.3
Q ss_pred cceEEEEecCCccHHHHHHHHHHHhhCCCe-EEEEEEee
Q 047130 665 SFRVAMIFLGGSDDREALTLAKRMSQNTSI-NLTVFRFI 702 (815)
Q Consensus 665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v-~ltvl~~~ 702 (815)
..+||+-|.||+|.---|.++.+.++..+- +++|+++-
T Consensus 27 f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD 65 (407)
T COG3969 27 FPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFID 65 (407)
T ss_pred CCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEc
Confidence 469999999999999999999999977765 89988864
No 168
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=39.36 E-value=1.2e+02 Score=34.91 Aligned_cols=59 Identities=17% Similarity=0.123 Sum_probs=41.2
Q ss_pred cceEEEEecCCccHHHHHHHHHHHh-hCCCeEEEEEEeeecCccccccchhhhhHHHHHHHhcccC
Q 047130 665 SFRVAMIFLGGSDDREALTLAKRMS-QNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPEN 729 (815)
Q Consensus 665 ~~~I~~~f~gg~DdreAL~~a~rma-~~~~v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 729 (815)
..+|++.+.||+|.--.|.+..++. ..++.+++++|++..-. . +...+.++++++..+.
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr-~-----~s~~~~~~~~~~~~~l 74 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLS-P-----NADSWVKHCEQVCQQW 74 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCC-c-----chHHHHHHHHHHHHHc
Confidence 3689999999999988777777766 45688999999985411 1 1222335677666543
No 169
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=37.89 E-value=24 Score=34.18 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=23.9
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEee
Q 047130 667 RVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFI 702 (815)
Q Consensus 667 ~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~ 702 (815)
+++++|.||+|... |.-|-+..|-+++++.++
T Consensus 2 ~v~vLfSGGKDSSL----aA~iL~klgyev~LVTvn 33 (198)
T COG2117 2 DVYVLFSGGKDSSL----AALILDKLGYEVELVTVN 33 (198)
T ss_pred ceEEEecCCCchhH----HHHHHHHhCCCcEEEEEE
Confidence 68899999999854 445667777777777665
No 170
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=37.04 E-value=1.5e+02 Score=34.77 Aligned_cols=71 Identities=11% Similarity=0.069 Sum_probs=40.1
Q ss_pred HHhhHHHHHHhhcccCChhhhcccchhHHHHHHHH-------HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhh
Q 047130 357 SGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVI-------VAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGI 429 (815)
Q Consensus 357 ~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i-------~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~ 429 (815)
..+++|---.-.|.+++-+.+....+-+ ....+ .+++...|+.+. ....++++++|++.+|-+++.---
T Consensus 102 f~vLLPpiif~sgy~l~k~~fF~n~~si--~~fa~~Gt~IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSATDP 177 (575)
T KOG1965|consen 102 FLVLLPPIIFNSGYSLKKKQFFRNIGSI--LLFAIFGTFISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISATDP 177 (575)
T ss_pred HHHhhchhhhcccceechhhhhhhhHHH--HHhhhcceeeehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcccCc
Confidence 3556666556678888876665432211 11111 122223333333 334568999999999988776554
Q ss_pred HH
Q 047130 430 VE 431 (815)
Q Consensus 430 v~ 431 (815)
|.
T Consensus 178 Vt 179 (575)
T KOG1965|consen 178 VT 179 (575)
T ss_pred hH
Confidence 44
No 171
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=36.16 E-value=6e+02 Score=27.62 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=57.3
Q ss_pred HHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHhhhhhHHHHHHh
Q 047130 357 SGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIPPLYCKVPKRDAFALALIMSTKGIVEISTYN 436 (815)
Q Consensus 357 ~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~li~~~ 436 (815)
..+++-.|++.++.-.|+..+...+-| ++ +.++..+...+..+..++.++.+..+-....+ -|..|-++.-...
T Consensus 275 gtv~lY~~v~vias~Ad~~~i~taP~~---i~--~gf~il~~h~~v~f~~~KlF~~dL~~i~~Asl-AniGG~~sAp~~A 348 (384)
T COG5505 275 GTVLLYLFVVVIASPADLRLIVTAPLI---IL--FGFIILISHLAVSFAAGKLFRVDLEEILLASL-ANIGGPTSAPAMA 348 (384)
T ss_pred hHHHHHHHHHHhccchhHHHHHhhhHH---HH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hccCCccchhHHH
Confidence 356777899999999999988776433 22 23333345667777788899988877655444 5777777777777
Q ss_pred hcccccccch
Q 047130 437 ISRNIESLTD 446 (815)
Q Consensus 437 ~~~~~~~i~~ 446 (815)
.+++...+.+
T Consensus 349 ~A~nr~lv~~ 358 (384)
T COG5505 349 IAKNRELVAP 358 (384)
T ss_pred hhcCchhcch
Confidence 7766554443
No 172
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=35.65 E-value=46 Score=32.26 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=25.0
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeec
Q 047130 667 RVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVK 704 (815)
Q Consensus 667 ~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~ 704 (815)
|+++.|.||+|+.-.|.++.+...+. .++++.+.
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~dtg 34 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFIDTG 34 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE-S
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEecC
Confidence 57899999999999999988888774 56766554
No 173
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=34.61 E-value=4.2e+02 Score=25.37 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCC
Q 047130 73 RLELQIIVAFAVTHACHFVLKRFGIP 98 (815)
Q Consensus 73 ~~ll~i~lil~~~~~~~~llkrl~~P 98 (815)
.++.|+++++.+..+...+.+-+++|
T Consensus 8 ~~l~ql~ill~~~~lGe~i~~ll~lP 33 (141)
T PRK04125 8 SFLHQAFIFAAIMLISNIIASFLPIP 33 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46788888888877777776666655
No 174
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=33.06 E-value=7.4e+02 Score=28.20 Aligned_cols=91 Identities=13% Similarity=-0.051 Sum_probs=54.8
Q ss_pred hhhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcc-cChhHHHhcchhhHHHHHH
Q 047130 93 KRFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVK-MDVSMIQKTGKKSLFTGLL 171 (815)
Q Consensus 93 krl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle-~d~~~l~~~~k~~~~i~~~ 171 (815)
+-+++|..+-.|+.=+++- .+|..|+..+ ....++-++++.--.--+|+-+|+. +|++.+.+.......+-..
T Consensus 267 ~~i~ih~~a~mIi~~~i~K--~~~lvP~~~e----~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~ 340 (414)
T PF03390_consen 267 KLIGIHAYAWMIILVAIVK--AFGLVPESLE----EGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVL 340 (414)
T ss_pred HhcCCcHHHHHHHHHHHHH--HhCcCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHH
Confidence 3358999999888766654 3555543111 1124455666666666788999998 9999998877555444333
Q ss_pred HHHHHH-HHHHHHHHHHHH
Q 047130 172 TLLIPF-LLGAAALEKMSR 189 (815)
Q Consensus 172 ~~~ip~-~~~~~~~~~l~~ 189 (815)
..++.. +.++.++++++.
T Consensus 341 ~~Vl~~~~~a~~vG~l~g~ 359 (414)
T PF03390_consen 341 ATVLGAVIGAFLVGKLVGF 359 (414)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 333333 334444555543
No 175
>PRK09903 putative transporter YfdV; Provisional
Probab=31.90 E-value=3.1e+02 Score=29.76 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=53.8
Q ss_pred hhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 047130 327 VYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATTMIP 406 (815)
Q Consensus 327 ~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~~l~ 406 (815)
+++.-...|....+...+.++-.+.+..++..+.+|...+..-.+.+.+..... + ...+...+.++.-++.+++.
T Consensus 11 pif~ii~lG~~~~r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~ 85 (314)
T PRK09903 11 PIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFAD--T---RLTLVSLVVIVGCFFFSWFG 85 (314)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhh--h---hHHHHHHHHHHHHHHHHHHH
Confidence 344455667777776677778888899999999999987776677775544322 1 12233333333334444554
Q ss_pred hh-hcCCChHHHHHHH
Q 047130 407 PL-YCKVPKRDAFALA 421 (815)
Q Consensus 407 ~~-~~~~~~~~~~~lg 421 (815)
++ +.+.+.++....+
T Consensus 86 ~~~~~~~~~~~~~~~~ 101 (314)
T PRK09903 86 CYKFFKRTHAEAAVCA 101 (314)
T ss_pred HHHHhcCCcchhhHhh
Confidence 43 5566655553333
No 176
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=31.61 E-value=57 Score=31.22 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=27.4
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeec
Q 047130 667 RVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVK 704 (815)
Q Consensus 667 ~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~ 704 (815)
+|++.|.||+|.--.+.++.+...+. -+++++++.+.
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dtg 37 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDTG 37 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCCC
Confidence 47899999999988888777765432 46677777654
No 177
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=30.15 E-value=4.1e+02 Score=24.40 Aligned_cols=88 Identities=10% Similarity=0.025 Sum_probs=49.6
Q ss_pred CCceEEEEEeeeccCCCccchhhhhcccc--ccCCcccchHHHHHHHHHHHhcCcceEEEEEEEecCCCChhHHHHHHHH
Q 047130 523 SLVTVYVLHLIDLRGRAAPLFISHKMQKK--TVSNRSYSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLAL 600 (815)
Q Consensus 523 ~~~~v~~Lhlvel~~r~~~~~~~~~~~~~--~~~~~~~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~ 600 (815)
-.-.|.-+|++|.++- .+.+..++.--. ........+...+-+++..+....++-+..-- .+..+-+++.+.|+
T Consensus 21 L~r~V~~v~v~e~~d~-~~~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~---~~~~iP~~~i~~A~ 96 (123)
T PF07905_consen 21 LDRPVRWVHVMEAPDP-SDWLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGR---YLDEIPEEIIELAD 96 (123)
T ss_pred CCCcEEEEEEeecCCH-HHhCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccC---ccccCCHHHHHHHH
Confidence 3456778899998753 222222211000 00011112234555666665544455444432 22378899999999
Q ss_pred hcCCCEEEEcCCCc
Q 047130 601 DKLASIVVLPFHRK 614 (815)
Q Consensus 601 e~~~dLIIlp~h~~ 614 (815)
+++.-++.+|++-+
T Consensus 97 ~~~lPli~ip~~~~ 110 (123)
T PF07905_consen 97 ELGLPLIEIPWEVP 110 (123)
T ss_pred HcCCCEEEeCCCCC
Confidence 99999999998543
No 178
>COG3371 Predicted membrane protein [Function unknown]
Probab=29.65 E-value=3e+02 Score=27.38 Aligned_cols=89 Identities=12% Similarity=0.171 Sum_probs=53.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHh-hhCCChhHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHH
Q 047130 64 NHPWDASLPRLELQIIVAFAVTHACHFVLK-RFGIPMIASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGY 142 (815)
Q Consensus 64 ~~pl~~~lp~~ll~i~lil~~~~~~~~llk-rl~~P~iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgl 142 (815)
.+++-|...+.+.-+..++.. ..+.| |.+-+.-.-++++|+.+.- .|.. |++. .-+.+..+..
T Consensus 46 p~~~ifN~glIl~Gll~i~~s----~~l~r~k~~~~g~~ll~is~lfLaL--VGVF--------pEgt--~pH~~vs~~f 109 (181)
T COG3371 46 PYGWIFNTGLILLGLLVILFS----ILLIRNKIENYGGALLIISGLFLAL--VGVF--------PEGT--PPHVFVSILF 109 (181)
T ss_pred CcceEEechHHHHHHHHHHHH----HHHHHHHhhhcchHHHHHHHHHHHh--eeeC--------CCCC--CchHHHHHHH
Confidence 333444554544444444322 22223 5666666677888877662 3443 3222 4567778888
Q ss_pred HHHHHHhhcccChhHHHhcchhhHHH
Q 047130 143 ILFQFLTGVKMDVSMIQKTGKKSLFT 168 (815)
Q Consensus 143 i~~lF~~Gle~d~~~l~~~~k~~~~i 168 (815)
-+++|...+-+.....+++.+....+
T Consensus 110 fll~fi~~~i~si~~~~~~~~~~~~~ 135 (181)
T COG3371 110 FLLSFIAMLIYSIGRLLRNRSGFGLI 135 (181)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 88999999999888887755554433
No 179
>PLN00200 argininosuccinate synthase; Provisional
Probab=29.51 E-value=1.2e+02 Score=34.47 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=28.3
Q ss_pred cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeec
Q 047130 665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVK 704 (815)
Q Consensus 665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~ 704 (815)
.++|+++|.||-|..-++..+++ ..+.+++-+++..+
T Consensus 5 ~~kVvva~SGGlDSsvla~~L~e---~~G~eViav~id~G 41 (404)
T PLN00200 5 LNKVVLAYSGGLDTSVILKWLRE---NYGCEVVCFTADVG 41 (404)
T ss_pred CCeEEEEEeCCHHHHHHHHHHHH---hhCCeEEEEEEECC
Confidence 35999999999999877766654 34667888888765
No 180
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=29.16 E-value=67 Score=28.81 Aligned_cols=80 Identities=24% Similarity=0.299 Sum_probs=48.3
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccccchhhhhHHHHHHHhcccCCCCCCEEEEEEEecCcH
Q 047130 667 RVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNEGQ 746 (815)
Q Consensus 667 ~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~V~~g~ 746 (815)
||+++=.||.+. ++|+.+++.+.+. -+++.+.+. .+....+ . ....++|-+
T Consensus 2 kVLviGsGgREH----Aia~~l~~s~~v~--~v~~aPGN~--G~~~~~~------------------~---~~~~~~d~~ 52 (100)
T PF02844_consen 2 KVLVIGSGGREH----AIAWKLSQSPSVE--EVYVAPGNP--GTAELGK------------------N---VPIDITDPE 52 (100)
T ss_dssp EEEEEESSHHHH----HHHHHHTTCTTEE--EEEEEE--T--TGGGTSE------------------E---E-S-TT-HH
T ss_pred EEEEECCCHHHH----HHHHHHhcCCCCC--EEEEeCCCH--HHHhhce------------------e---cCCCCCCHH
Confidence 677777776663 5688888888765 244443311 1110000 0 011456777
Q ss_pred HHHHHHHhhCCCccEEEEcccCCCCCccccCCCcC
Q 047130 747 ETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRC 781 (815)
Q Consensus 747 ~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w 781 (815)
++.+++++.+ .||+++|.- .|+..|+.|.
T Consensus 53 ~l~~~a~~~~--idlvvvGPE----~pL~~Gl~D~ 81 (100)
T PF02844_consen 53 ELADFAKENK--IDLVVVGPE----APLVAGLADA 81 (100)
T ss_dssp HHHHHHHHTT--ESEEEESSH----HHHHTTHHHH
T ss_pred HHHHHHHHcC--CCEEEECCh----HHHHHHHHHH
Confidence 8999999855 499999974 6888998764
No 181
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.89 E-value=3.4e+02 Score=27.92 Aligned_cols=72 Identities=13% Similarity=0.079 Sum_probs=38.8
Q ss_pred cchHHHHHHHHHHHhcCcceEEEEEEEecCCCCh--hHHHHHHHHhcCCCEEEEc-CCCccccCCccccCChhhHHHHHH
Q 047130 558 YSENVILSFKLFEEKNWGTACVYPFTAISPPKLM--HEDVCMLALDKLASIVVLP-FHRKWFIDGSIESDDNTKRALNCS 634 (815)
Q Consensus 558 ~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~m--~~dI~~~A~e~~~dLIIlp-~h~~~~~dg~~~~~~~~~r~vn~~ 634 (815)
....+.+.+++..++.. ..+.... ...+. ..+..+....+++|-||+. .+. +... -+
T Consensus 13 ~~~~~~~gi~~~~~~~~--~~~~~~~---~~~~~~~~~~~i~~l~~~~~dgiii~~~~~----------~~~~-----~~ 72 (265)
T cd06285 13 VMATMYEGIEEAAAERG--YSTFVAN---TGDNPDAQRRAIEMLLDRRVDGLILGDARS----------DDHF-----LD 72 (265)
T ss_pred cHHHHHHHHHHHHHHCC--CEEEEEe---CCCCHHHHHHHHHHHHHcCCCEEEEecCCC----------ChHH-----HH
Confidence 45667777777666532 3332221 22222 2356667788899966653 221 1111 13
Q ss_pred HhhcCCCceEEEeccC
Q 047130 635 VLERAPCSVGILIDRG 650 (815)
Q Consensus 635 Vl~~ApCsVgIlvdrg 650 (815)
-++.++.|| |++||.
T Consensus 73 ~~~~~~iPv-v~~~~~ 87 (265)
T cd06285 73 ELTRRGVPF-VLVLRH 87 (265)
T ss_pred HHHHcCCCE-EEEccC
Confidence 356678898 777885
No 182
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=28.72 E-value=66 Score=35.12 Aligned_cols=25 Identities=12% Similarity=0.348 Sum_probs=18.3
Q ss_pred cHHHHHHHHhhC-----CCccEEEEcccCC
Q 047130 745 GQETLAKIQSVV-----PKYDLVIVGRRDN 769 (815)
Q Consensus 745 g~~~~~~i~~~~-----~~~DLiivG~~~~ 769 (815)
..++.++|+..+ .+||++|++|+||
T Consensus 57 ~~~I~~al~~~~~~~~~~~~Dviii~RGGG 86 (319)
T PF02601_consen 57 AASIVSALRKANEMGQADDFDVIIIIRGGG 86 (319)
T ss_pred HHHHHHHHHHHHhccccccccEEEEecCCC
Confidence 344666666664 2589999999998
No 183
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=28.54 E-value=3.8e+02 Score=26.40 Aligned_cols=95 Identities=16% Similarity=0.102 Sum_probs=55.2
Q ss_pred eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcCc
Q 047130 496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWG 575 (815)
Q Consensus 496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 575 (815)
||++++....++..++.++....+ +.+..+.++|+-. +.. . .++.-.+..+++++..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~--~~~~~v~~v~vd~--g~~-----~------------~~~~~~~~~~~~~~~~-- 57 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQP--KLKIRLIAAHVDH--GLR-----P------------ESDEEAEFVQQFCKKL-- 57 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHH--HcCCCEEEEEeCC--CCC-----h------------hHHHHHHHHHHHHHHc--
Confidence 688999999999999999977652 2345678888632 110 0 0112233445555542
Q ss_pred ceEEEEEEEecCC-------CChh--------HHHHHHHHhcCCCEEEEcCCCc
Q 047130 576 TACVYPFTAISPP-------KLMH--------EDVCMLALDKLASIVVLPFHRK 614 (815)
Q Consensus 576 ~v~v~~~~~vs~~-------~~m~--------~dI~~~A~e~~~dLIIlp~h~~ 614 (815)
+++.+... +... .++. +-+.+.|++++.+.|+.|.|..
T Consensus 58 gi~~~~~~-~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~ 110 (189)
T TIGR02432 58 NIPLEIKK-VDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHAD 110 (189)
T ss_pred CCCEEEEE-ecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccH
Confidence 23222211 1110 1122 4566788889999999998754
No 184
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=28.36 E-value=3.3e+02 Score=26.82 Aligned_cols=96 Identities=13% Similarity=0.046 Sum_probs=50.8
Q ss_pred eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcCc
Q 047130 496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWG 575 (815)
Q Consensus 496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 575 (815)
||++++.+-.++..++.++..+. ++.+..+.++|+=.-.. ..++.-.+..++++++.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~--~~~~~~~~~~~vdh~~~-------------------~~s~~~~~~v~~~~~~~-- 57 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELR--RRNGIKLIAVHVDHGLR-------------------EESDEEAEFVEEICEQL-- 57 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHH--TTTTTEEEEEEEE-STS-------------------CCHHHHHHHHHHHHHHT--
T ss_pred CEEEEEcCCHHHHHHHHHHHHHH--HhcCCCeEEEEEecCCC-------------------cccchhHHHHHHHHHhc--
Confidence 68899998888999999999998 44677899999843111 01122223445555542
Q ss_pred ceEEEEEEEe-c-CCCChh---------HHHHHHHHhcCCCEEEEcCCCc
Q 047130 576 TACVYPFTAI-S-PPKLMH---------EDVCMLALDKLASIVVLPFHRK 614 (815)
Q Consensus 576 ~v~v~~~~~v-s-~~~~m~---------~dI~~~A~e~~~dLIIlp~h~~ 614 (815)
+++......- + ....-. +-+.+.|.+++++.|++|-|..
T Consensus 58 ~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~d 107 (182)
T PF01171_consen 58 GIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLD 107 (182)
T ss_dssp T-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHH
T ss_pred CCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCC
Confidence 3333222111 0 011222 2344578888999999997754
No 185
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=27.60 E-value=3.7e+02 Score=30.25 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhhcccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CcchHHHHHHHHHHHhhcc
Q 047130 136 LVATFGYILFQFLTGVKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGI---GMEDKMKLWVVTVVHSLSR 212 (815)
Q Consensus 136 ~la~lgli~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~---~~~~~~~~l~ig~~ls~Ts 212 (815)
.++-+|+..++-..-.+.+.+.+.+.++-.........+.-++.-..+.+.+.+.-+. ..........++..-|...
T Consensus 182 ~~~Pigv~~l~a~~~~~~~~~~l~~l~~~v~~~~~~~~i~~~v~~pl~~~~~~~~np~~~~~~~~~~~l~Af~T~SS~at 261 (390)
T PF00375_consen 182 KLAPIGVFGLIANSIATQGLSILGALGKFVLTVYVALLIHLFVVLPLILFVLTRKNPFKFLKAMLPALLTAFSTSSSAAT 261 (390)
T ss_dssp TTHHHHHHHHHHHHHHSSCCGHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-TTT--HHHHHHHTHHHHHHHHHHT-TTTS
T ss_pred HHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHHHhhccCCCCC
Confidence 3555677766666677788888887775544443333332222222222211110000 0001122233333345566
Q ss_pred HHHHHHHHHH-hhhccChhHHHH--HHHHHHHHHHHH
Q 047130 213 FPSIACLVSD-LRIINSELGRLG--LSCALVSEMIGL 246 (815)
Q Consensus 213 ~~vv~~iL~e-l~ll~s~~g~la--ls~a~v~D~~~~ 246 (815)
.|+..+-++| +| .+.+..+.+ +++.+-.|..++
T Consensus 262 lP~~~~~~~~~~g-v~~~i~~fv~Plg~t~n~~G~a~ 297 (390)
T PF00375_consen 262 LPVTIECLEENLG-VSRSIASFVLPLGATINMDGTAL 297 (390)
T ss_dssp HHHHHHHHHT-TT---HHHHHHHHHHHTTS--HHHHH
T ss_pred chhHHHHHHHhcC-CCcccceeeechhccccCCccch
Confidence 8899999888 46 455666655 344444455443
No 186
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.53 E-value=3.3e+02 Score=22.67 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHH
Q 047130 269 NLGIMVVYLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHN 308 (815)
Q Consensus 269 ~~~~~i~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~ 308 (815)
..++.++.++..+|+.|..+...++.+| |+.|-.+..
T Consensus 10 ivl~ll~G~~~G~fiark~~~k~lk~NP---pine~~iR~ 46 (71)
T COG3763 10 IVLALLAGLIGGFFIARKQMKKQLKDNP---PINEEMIRM 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCC---CCCHHHHHH
Confidence 3344444555567788888877777776 456655443
No 187
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=27.45 E-value=6.7e+02 Score=27.30 Aligned_cols=50 Identities=10% Similarity=0.140 Sum_probs=30.7
Q ss_pred hHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhccc
Q 047130 328 YFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLL 380 (815)
Q Consensus 328 ~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~ 380 (815)
++.+.++|...|.-+..+..+. .|.. ..+...+.|...|++++.+.+...
T Consensus 7 l~~ai~la~~~P~~g~~~~~~~--~~~~-~~~~v~~iFf~~Gl~L~~~~l~~~ 56 (313)
T PF13593_consen 7 LLLAILLAYLFPAPGAAGGVIK--PEYV-IKYGVALIFFISGLSLPTEELKAA 56 (313)
T ss_pred HHHHHHHHHHcCcccccCCccc--hhhh-HHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4567778888887543332221 1222 234466677778999998877643
No 188
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=27.03 E-value=46 Score=35.63 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhCCCeEEEEEEeeecCccccccchhhhhHHHHHHHhcccCCCCCCEEEEEEEecCcHHHHHHHHhhCCC
Q 047130 679 REALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQSVVPK 758 (815)
Q Consensus 679 reAL~~a~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~V~~g~~~~~~i~~~~~~ 758 (815)
+-|++|| .+|-.-++|++| . .+..++.|--|++-.+.....+..+.|+|+.+.+- .+...++ ...
T Consensus 185 ~~AF~yA---r~~~R~~vtvvH---K------aNImr~tDGLFle~cre~a~~y~dI~~eE~~lDt~--~l~lv~~-P~~ 249 (365)
T KOG0785|consen 185 EYAFEYA---RQNGRKRVTVVH---K------ANIMRMTDGLFLECCREVAKKYPDIKFEEQYLDTC--CLKLVRN-PSC 249 (365)
T ss_pred HHHHHHH---HHcCCCceEEEe---h------hhhhhhcchHHHHHHHHHhhhCCccchhHHHHHHH--HHHHhcC-chh
Confidence 3456666 234556777776 2 13566777667766665544567899999998766 7777776 556
Q ss_pred ccEEEEccc
Q 047130 759 YDLVIVGRR 767 (815)
Q Consensus 759 ~DLiivG~~ 767 (815)
||.+++.--
T Consensus 250 ~DVlV~PNL 258 (365)
T KOG0785|consen 250 FDVLVMPNL 258 (365)
T ss_pred ceEEeccch
Confidence 997777543
No 189
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=26.61 E-value=6.9e+02 Score=27.33 Aligned_cols=76 Identities=13% Similarity=0.098 Sum_probs=40.1
Q ss_pred cchHHHHHHHHHHHhcCcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhh
Q 047130 558 YSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLE 637 (815)
Q Consensus 558 ~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~ 637 (815)
...++++.+++..++....+.+..... + ..-.++..+...++++|=||+-. .. ..+. -.+.++
T Consensus 72 ~~~~i~~gi~~~~~~~gy~~~l~~~~~-~--~~~e~~~~~~l~~~~vdGiIi~~-~~--------~~~~-----~~~~l~ 134 (333)
T COG1609 72 FFAEILKGIEEAAREAGYSLLLANTDD-D--PEKEREYLETLLQKRVDGLILLG-ER--------PNDS-----LLELLA 134 (333)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEECCCC-C--HHHHHHHHHHHHHcCCCEEEEec-CC--------CCHH-----HHHHHH
Confidence 345567777776665433333322110 1 23345566777788887666653 10 0111 125566
Q ss_pred cCCCceEEEeccCC
Q 047130 638 RAPCSVGILIDRGR 651 (815)
Q Consensus 638 ~ApCsVgIlvdrg~ 651 (815)
...+|+ |++||..
T Consensus 135 ~~~~P~-V~i~~~~ 147 (333)
T COG1609 135 AAGIPV-VVIDRSP 147 (333)
T ss_pred hcCCCE-EEEeCCC
Confidence 668887 5567753
No 190
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=26.30 E-value=6.2e+02 Score=24.75 Aligned_cols=48 Identities=15% Similarity=0.076 Sum_probs=26.7
Q ss_pred hhHHHHHhhhhccccc---ccccccccccccCCCchhHHHHHHHHHHHHHHHHhhc
Q 047130 99 MIASQITGGLILGQAI---PGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGV 151 (815)
Q Consensus 99 ~iv~~IlaGillGP~~---lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gl 151 (815)
.-+..+++|+++||-. .+...+..+.+++.. ..++-.|.++--|+.|+
T Consensus 34 ~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~~g-----~~~afpg~~~~a~laGl 84 (160)
T TIGR02359 34 QHFVNVIAGVLLGPWYALAVAFIIGLLRNTLGLG-----TVLAFPGGMPGALLAGL 84 (160)
T ss_pred hHHHHHHHHHHHchHHHHHHHHHHHHHHHHhCCC-----chHHHHHHHHHHHHHHH
Confidence 5688999999999952 222222222222210 12233466667777777
No 191
>PF01889 DUF63: Membrane protein of unknown function DUF63; InterPro: IPR002749 These proteins of unknown function are found in archaebacteria and are probably transmembrane proteins.
Probab=25.85 E-value=8.4e+02 Score=26.11 Aligned_cols=43 Identities=14% Similarity=0.109 Sum_probs=24.1
Q ss_pred HhhccHHHHHHHHHH--hhhccChhHHHHHHHHHHHHHHHHHHHH
Q 047130 208 HSLSRFPSIACLVSD--LRIINSELGRLGLSCALVSEMIGLILTR 250 (815)
Q Consensus 208 ls~Ts~~vv~~iL~e--l~ll~s~~g~lals~a~v~D~~~~~ll~ 250 (815)
++.....++.-+.+. .+....++|..++-+=++|-....+.+-
T Consensus 152 ~a~~~t~~~~~~~~~~~~~~~~~~~~~~vv~aH~lDa~sT~vGid 196 (273)
T PF01889_consen 152 LATIATALVWLLLRRFKVNILTDPLGLLVVFAHLLDASSTFVGID 196 (273)
T ss_pred HHHHHHHHHHHHHhccchhhhccchhHHHHHHHHHhHHHHhhhee
Confidence 333333444434333 3556677787777777777666655443
No 192
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=25.52 E-value=61 Score=29.06 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=19.8
Q ss_pred ChhHHHHHHHHhcCCCEEEEcC
Q 047130 590 LMHEDVCMLALDKLASIVVLPF 611 (815)
Q Consensus 590 ~m~~dI~~~A~e~~~dLIIlp~ 611 (815)
+-++++++.|+++++||+|+|-
T Consensus 49 ~d~~~l~~~a~~~~idlvvvGP 70 (100)
T PF02844_consen 49 TDPEELADFAKENKIDLVVVGP 70 (100)
T ss_dssp T-HHHHHHHHHHTTESEEEESS
T ss_pred CCHHHHHHHHHHcCCCEEEECC
Confidence 5689999999999999999995
No 193
>PRK01658 holin-like protein; Validated
Probab=25.37 E-value=5.5e+02 Score=23.85 Aligned_cols=26 Identities=15% Similarity=0.422 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCC
Q 047130 73 RLELQIIVAFAVTHACHFVLKRFGIP 98 (815)
Q Consensus 73 ~~ll~i~lil~~~~~~~~llkrl~~P 98 (815)
.++.|+.+++.+..+...+.+-+++|
T Consensus 5 ~~l~~l~il~~~~~~G~~i~~~l~lp 30 (122)
T PRK01658 5 KLLVQIALLYVFALVGTWIQEQLHLP 30 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46778888887777666666666654
No 194
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=25.05 E-value=7.1e+02 Score=27.36 Aligned_cols=73 Identities=14% Similarity=0.080 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhccc
Q 047130 305 HIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLL 380 (815)
Q Consensus 305 ~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~ 380 (815)
.+.+-+..+.+++.+.- .-.+.+|.+.+|-.+.+.+ .-+++.+..+.-..+...-+.=..+|...+-+.+.+.
T Consensus 194 Ki~Fpivv~~i~~ll~P--~a~pLig~Lm~GnllrEsG-v~~rl~~taqn~l~nivTifLGl~vG~~~~A~~fL~~ 266 (354)
T TIGR01109 194 KILFPIVLLLLVALLIP--KALPLVGMLMFGNLMRESG-VVERLSKTASNELLNIVTILLGLSVGAKMRADKFLTP 266 (354)
T ss_pred hhHHHHHHHHHHHHHcc--chHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCCh
Confidence 34555555555555532 2368899999999998873 3344444443333333333334567888887776655
No 195
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=24.91 E-value=1.5e+02 Score=28.24 Aligned_cols=57 Identities=16% Similarity=0.164 Sum_probs=41.7
Q ss_pred hhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEeccC
Q 047130 591 MHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRG 650 (815)
Q Consensus 591 m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdrg 650 (815)
..+.+.+++++++++.||+|.-.+ .+|.........+.+.+++-++-++|| +++|..
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~--~~G~~~~~~~~v~~f~~~L~~~~~~~v-~~~DEr 98 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLN--MDGTEGPRTERARKFANRLEGRFGLPV-VLVDER 98 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCC--CCCCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCC
Confidence 478899999999999999998554 355543334457788888777778887 445554
No 196
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=24.86 E-value=1.9e+02 Score=31.75 Aligned_cols=94 Identities=16% Similarity=0.280 Sum_probs=55.7
Q ss_pred HHHHHHHHhhCCCeEEEEEEeeecCccccccchhhhhHHHHHHHhcccCCCCCCEEEEEEEe-cCcHHHHHHHHhhCC-C
Q 047130 681 ALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMV-NEGQETLAKIQSVVP-K 758 (815)
Q Consensus 681 AL~~a~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~V-~~g~~~~~~i~~~~~-~ 758 (815)
|....+|+-+..+.+. ..+|++|.. .+.+..+..+..++ +.+.|.|.+- ...+||.+++|+|.+ .
T Consensus 34 a~~~v~rfL~~l~~~~-~~~flt~p~---------~mG~~~~~~~~~~~---~v~~~~~~~~~tTa~DT~~~~r~~~~~g 100 (355)
T COG3199 34 AIVRVKRFLKKLDANG-DVEFLTPPG---------PMGESLAEASGFKY---RVIRFQESTPRTTAEDTINAVRRMVERG 100 (355)
T ss_pred HHHHHHHHHHhccccC-ceEEEeCCc---------ccchhHHHhhcCcc---eEEeecccCCCccHHHHHHHHHHHHhcC
Confidence 5666788877777332 356665522 23334444444332 2233888776 667899999999976 6
Q ss_pred ccEEEEcccCCCCCccccCCCcCCCCCcccc
Q 047130 759 YDLVIVGRRDNTETPQTSGLDRCREFPELGI 789 (815)
Q Consensus 759 ~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~ 789 (815)
-||+++--+.+.-.-..++. =.+-|-||+
T Consensus 101 VdlIvfaGGDGTarDVa~av--~~~vPvLGi 129 (355)
T COG3199 101 VDLIVFAGGDGTARDVAEAV--GADVPVLGI 129 (355)
T ss_pred ceEEEEeCCCccHHHHHhhc--cCCCceEee
Confidence 89998866544333333443 224466663
No 197
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=24.78 E-value=82 Score=32.56 Aligned_cols=121 Identities=11% Similarity=0.067 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCh------hHHHHHhhhhcccccccccccccccccCCCchhHHHHHHHHHHHHHHHHhhcc
Q 047130 79 IVAFAVTHACHFVLKRFGIPM------IASQITGGLILGQAIPGLNRYYKHVLFSDTSLGTLDLVATFGYILFQFLTGVK 152 (815)
Q Consensus 79 ~lil~~~~~~~~llkrl~~P~------iv~~IlaGillGP~~lg~~~~~~~~lfp~~~~~~l~~la~lgli~~lF~~Gle 152 (815)
.++...+...+++++--+.|. .++++++|+++-...+- .. ...+| .+-..+-.+.+....--.|++
T Consensus 103 iV~~~lA~~g~~lle~A~~P~~i~l~~aigel~a~fLiiNI~~~--~~--~~~~~----iv~s~l~t~a~~I~~ik~gLg 174 (252)
T KOG3826|consen 103 IVIWGLATDGGFLLELARVPVTIGLPTAIGELLAGFLIINISFV--NG--AVCAP----IVVSPLRTVALTIIKIKAGLG 174 (252)
T ss_pred ehhhhHhhchHhhHhhccccccccccchHHHHHHHHHheecchh--hh--ceeee----eeehhhhhccchHHHHHhhhc
Confidence 345555666777777666555 99999999765432110 00 01111 233455667788888899999
Q ss_pred cChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccH
Q 047130 153 MDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRF 213 (815)
Q Consensus 153 ~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~ 213 (815)
++.+.+++..+.....++....+..-.....++++.. .+|..++..|.+...-..
T Consensus 175 t~~r~~~nv~~vc~~~~v~~~~~~a~a~~~~S~~~l~------~~ii~~~l~g~v~~~i~~ 229 (252)
T KOG3826|consen 175 TLPRAPENVLAVCCVLMVLPSIIEASAPAVTSHFLLA------GPIIWAFLLGIVIGSILW 229 (252)
T ss_pred ccccchhhhhHHHhhhhhhhhhhccccHHHHHHHHhc------cchHHHhccccceeeeec
Confidence 9999999888777776555555444445555555544 257777777776655443
No 198
>COG4827 Predicted transporter [General function prediction only]
Probab=24.62 E-value=7.6e+02 Score=25.20 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhcccChhHHHh--cchhhHHHHHHH-HHHHHHH
Q 047130 137 VATFGYILFQFLTGVKMDVSMIQK--TGKKSLFTGLLT-LLIPFLL 179 (815)
Q Consensus 137 la~lgli~~lF~~Gle~d~~~l~~--~~k~~~~i~~~~-~~ip~~~ 179 (815)
.-.+|..+.+|..|+++-+..=.. +.|++..|+... ++++++.
T Consensus 10 ~~~~gIl~~ilIfGlKtGlg~GFag~~~r~a~~Iaa~yg~li~a~~ 55 (239)
T COG4827 10 TYVIGILIGILIFGLKTGLGCGFAGITTREALTIAASYGFLILAFG 55 (239)
T ss_pred HHHHHHHHHHHHHhhhhccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 336788888999999887765322 234455555444 4444443
No 199
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=24.47 E-value=83 Score=36.12 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=30.9
Q ss_pred HHHHHhcccCCCCCCEEEEEEEe---cCcHHHHHHHHhhCCC-ccEEEEcccCC
Q 047130 720 EVLKEVKPENNFNQRVKYVVEMV---NEGQETLAKIQSVVPK-YDLVIVGRRDN 769 (815)
Q Consensus 720 ~~l~~~~~~~~~~~~v~y~e~~V---~~g~~~~~~i~~~~~~-~DLiivG~~~~ 769 (815)
++++..+.++...+...| ...| ....++.++|+..+.. ||.||++|+||
T Consensus 151 D~~~~~~~r~p~~~~~~~-~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGG 203 (438)
T PRK00286 151 DILTVLRRRFPLVEVIIY-PTLVQGEGAAASIVAAIERANARGEDVLIVARGGG 203 (438)
T ss_pred HHHHHHHhcCCCCeEEEe-cCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 566666665433222333 3333 2245678888877653 89999999998
No 200
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=23.95 E-value=5.3e+02 Score=27.73 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=70.2
Q ss_pred ceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEeccCCcccc
Q 047130 576 TACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGRIGRF 655 (815)
Q Consensus 576 ~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdrg~~~~~ 655 (815)
+..|-.|-..+ ..+.+.|++.|++.+..+||.-+.+.-... ....+.....+..+++++||.+=-|++...+.
T Consensus 17 ~yaV~Afn~~n--~e~~~avi~aAe~~~~Pvii~~~~~~~~~~-----~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~ 89 (281)
T PRK06806 17 NYGVGAFSVAN--MEMVMGAIKAAEELNSPIILQIAEVRLNHS-----PLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEK 89 (281)
T ss_pred CceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhccC-----ChHHHHHHHHHHHHHCCCCEEEECCCCCCHHH
Confidence 34455555544 578999999999999999998875542211 11236667778899999999998898741110
Q ss_pred cccccccCCcceEEEEecC-CccHHHHHHHHHHH---hhCCCeEE--EEEEe
Q 047130 656 ISSELSLGSSFRVAMIFLG-GSDDREALTLAKRM---SQNTSINL--TVFRF 701 (815)
Q Consensus 656 ~~~~~~~~~~~~I~~~f~g-g~DdreAL~~a~rm---a~~~~v~l--tvl~~ 701 (815)
... .-....+.++ +.+ ..+++|-++.++++ ++..++.+ .+.|+
T Consensus 90 i~~--Al~~G~tsVm-~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghl 138 (281)
T PRK06806 90 IKE--ALEIGFTSVM-FDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRV 138 (281)
T ss_pred HHH--HHHcCCCEEE-EcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeE
Confidence 000 0001122222 233 34678888777766 45556554 34554
No 201
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=23.85 E-value=4.6e+02 Score=31.68 Aligned_cols=25 Identities=8% Similarity=-0.057 Sum_probs=16.8
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHH
Q 047130 63 GNHPWDASLPRLELQIIVAFAVTHAC 88 (815)
Q Consensus 63 g~~pl~~~lp~~ll~i~lil~~~~~~ 88 (815)
.-||+ .+.+.+....++.++++.++
T Consensus 462 sl~p~-s~al~~AAiaGV~LF~SglI 486 (643)
T PF10136_consen 462 SLDPF-SPALLYAAIAGVWLFLSGLI 486 (643)
T ss_pred hcCcc-ccHHHHHHHHHHHHHHHHHH
Confidence 57888 56666666666666666555
No 202
>COG3748 Predicted membrane protein [Function unknown]
Probab=23.75 E-value=6.7e+02 Score=27.39 Aligned_cols=39 Identities=21% Similarity=0.121 Sum_probs=22.9
Q ss_pred HHhhHHHHHHhhcccCChhhhcccchhHHHHHHHHHHHHHHH
Q 047130 357 SGLFIPLVVTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLA 398 (815)
Q Consensus 357 ~~l~lPlFF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~ 398 (815)
+.+-+|+.|++..=+..+.. ....+|+ +..++.+.++..
T Consensus 226 nylTLPVlF~MlSNHyp~~~-gt~fnWi--i~alv~l~gV~I 264 (407)
T COG3748 226 NYLTLPVLFTMLSNHYPLAF-GTQFNWI--IAALVFLMGVLI 264 (407)
T ss_pred ceehHHHHHHHHhccCcccc-cCchhHH--HHHHHHHHHHHH
Confidence 46789999998776666533 3334674 344444444433
No 203
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=23.65 E-value=5e+02 Score=25.29 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=55.6
Q ss_pred eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcCc
Q 047130 496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWG 575 (815)
Q Consensus 496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 575 (815)
||++++.+-.++.-++.++...... .+..++++|+-. +.. ..++...+..+++++..
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~--~~~~v~~v~id~--~~~-----------------~~~~~~~~~~~~~~~~~-- 57 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPR--LGLRLVAVHVDH--GLR-----------------PESDEEAAFVADLCAKL-- 57 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH--cCCcEEEEEecC--CCC-----------------chHHHHHHHHHHHHHHc--
Confidence 6889999999999999999887632 356788888732 110 00122333444555442
Q ss_pred ceEEEEEE-EecCC-CC---------hhHHHHHHHHhcCCCEEEEcCCCc
Q 047130 576 TACVYPFT-AISPP-KL---------MHEDVCMLALDKLASIVVLPFHRK 614 (815)
Q Consensus 576 ~v~v~~~~-~vs~~-~~---------m~~dI~~~A~e~~~dLIIlp~h~~ 614 (815)
+++.+... ..++. .. +.+-..+.|++++++.|+.|-|..
T Consensus 58 ~i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~d 107 (185)
T cd01992 58 GIPLYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHAD 107 (185)
T ss_pred CCcEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcH
Confidence 33333221 11111 11 123455678899999999998754
No 204
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=23.15 E-value=3.3e+02 Score=28.66 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=30.1
Q ss_pred cceEEEEecCCccHHHHHHHHHHHhhCC--CeEEEEEEeee
Q 047130 665 SFRVAMIFLGGSDDREALTLAKRMSQNT--SINLTVFRFIV 703 (815)
Q Consensus 665 ~~~I~~~f~gg~DdreAL~~a~rma~~~--~v~ltvl~~~~ 703 (815)
..+|++++.||.|.--.|.++.++.+.. +.++..+++..
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~ 69 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQ 69 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecC
Confidence 4589999999999987777777776543 45777777764
No 205
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=22.94 E-value=9.1e+02 Score=28.98 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhh
Q 047130 276 YLLAVVFVVRPAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPM 355 (815)
Q Consensus 276 ~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~ 355 (815)
+++++..+.|.+.. +++....|+-- +.+..=++.+|....+ +..++-+.+++..+..+ ..++...|.+++
T Consensus 50 ~l~L~~vi~r~v~~-l~~arr~Gka~--sRLh~Riv~lFslvav-----~Pavivaifs~~~in~g--ld~WF~~kt~~i 119 (712)
T COG5000 50 LLILSAVIGRKVIR-LLKARRLGKAG--SRLHVRIVGLFSLVAV-----IPAVIVAIFSAQFINLG--LDRWFSKKTQTI 119 (712)
T ss_pred HHHHHHHHHHHHHH-HHHHHhcCchH--HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhh--HHHHhhhhHHHH
Confidence 33344445555554 44443445322 2333333333333322 35566667777777765 445555555544
Q ss_pred H
Q 047130 356 V 356 (815)
Q Consensus 356 ~ 356 (815)
+
T Consensus 120 l 120 (712)
T COG5000 120 L 120 (712)
T ss_pred H
Confidence 3
No 206
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=22.87 E-value=1.2e+02 Score=34.52 Aligned_cols=50 Identities=16% Similarity=0.249 Sum_probs=36.3
Q ss_pred HHHHHhcccCCCCCCEEEEEEEe--cCcHHHHHHHHhhCC--CccEEEEcccCC
Q 047130 720 EVLKEVKPENNFNQRVKYVVEMV--NEGQETLAKIQSVVP--KYDLVIVGRRDN 769 (815)
Q Consensus 720 ~~l~~~~~~~~~~~~v~y~e~~V--~~g~~~~~~i~~~~~--~~DLiivG~~~~ 769 (815)
+.+...+.++...+.++|.-.+= +.+.|++++|+..+. ++|.+||||+||
T Consensus 151 DIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGG 204 (440)
T COG1570 151 DILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGG 204 (440)
T ss_pred HHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcc
Confidence 57777777766555666654433 446789999988753 389999999987
No 207
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=22.87 E-value=1e+03 Score=25.97 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhhccChh
Q 047130 213 FPSIACLVSDLRIINSEL 230 (815)
Q Consensus 213 ~~vv~~iL~el~ll~s~~ 230 (815)
.|++.++.++.|+.++++
T Consensus 117 ~Pi~~~~~~~~~i~~~~~ 134 (351)
T PF03600_consen 117 IPIVLSLARKLGIPPSPL 134 (351)
T ss_pred HHHHHHHHHHcCCChHHH
Confidence 378888888888654433
No 208
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=22.87 E-value=3.1e+02 Score=25.87 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=45.0
Q ss_pred CCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcC-CCceEEEeccC
Q 047130 588 PKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERA-PCSVGILIDRG 650 (815)
Q Consensus 588 ~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~A-pCsVgIlvdrg 650 (815)
.....+.+.+++++++++.||+|.-.+ .||.........+.+.+++-++. ++||-. +|..
T Consensus 36 ~~~~~~~l~~li~~~~i~~iVvGlP~~--~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~-~DEr 96 (135)
T PF03652_consen 36 REKDIEELKKLIEEYQIDGIVVGLPLN--MDGSESEQARRVRKFAEELKKRFPGIPVIL-VDER 96 (135)
T ss_dssp CCCCHHHHHHHHHHCCECEEEEEEEBB--CTSSC-CCHHHHHHHHHHHHHHH-TSEEEE-EECS
T ss_pred CchHHHHHHHHHHHhCCCEEEEeCCcc--cCCCccHHHHHHHHHHHHHHHhcCCCcEEE-ECCC
Confidence 367899999999999999999998543 35554444556788888888886 899855 5543
No 209
>PRK04148 hypothetical protein; Provisional
Probab=22.06 E-value=1.1e+02 Score=28.97 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=27.7
Q ss_pred EecCCCChhHHHHHHHHhcCCCEEEEcCCCcc
Q 047130 584 AISPPKLMHEDVCMLALDKLASIVVLPFHRKW 615 (815)
Q Consensus 584 ~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~ 615 (815)
++-|...||..|.++|++-++|++|-|..+..
T Consensus 83 sirpp~el~~~~~~la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 83 SIRPPRDLQPFILELAKKINVPLIIKPLSGEE 114 (134)
T ss_pred EeCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 33477899999999999999999999997654
No 210
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=21.88 E-value=8.5e+02 Score=24.71 Aligned_cols=50 Identities=12% Similarity=0.003 Sum_probs=26.6
Q ss_pred ccchHHHHHHHHHHHhcCcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEE
Q 047130 557 SYSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVL 609 (815)
Q Consensus 557 ~~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIl 609 (815)
....++.+.+++..++....+.+... ..+ .+-..++.+....+++|-||+
T Consensus 12 ~~~~~i~~gi~~~~~~~g~~~~~~~~-~~~--~~~~~~~i~~l~~~~vdgiii 61 (260)
T cd06286 12 PYFSQLVDGIEKAALKHGYKVVLLQT-NYD--KEKELEYLELLKTKQVDGLIL 61 (260)
T ss_pred chHHHHHHHHHHHHHHcCCEEEEEeC-CCC--hHHHHHHHHHHHHcCCCEEEE
Confidence 34566777777766653333333221 111 122335666677778886665
No 211
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=21.87 E-value=1.5e+02 Score=27.73 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=24.0
Q ss_pred EecCCCChhHHHHHHHHhcCCCEEEEcCCCcc
Q 047130 584 AISPPKLMHEDVCMLALDKLASIVVLPFHRKW 615 (815)
Q Consensus 584 ~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~ 615 (815)
++-|...||..|.++|++-++|++|-|..+..
T Consensus 76 SiRPP~El~~~il~lA~~v~adlii~pL~~e~ 107 (127)
T PF03686_consen 76 SIRPPPELQPPILELAKKVGADLIIRPLGGES 107 (127)
T ss_dssp EES--TTSHHHHHHHHHHHT-EEEEE-BTTB-
T ss_pred EeCCChHHhHHHHHHHHHhCCCEEEECCCCCC
Confidence 44577899999999999999999999986653
No 212
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=21.77 E-value=1.7e+02 Score=28.46 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=24.9
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeee
Q 047130 667 RVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIV 703 (815)
Q Consensus 667 ~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~ 703 (815)
++++.+.||.|.--++.++.+. +.++..+++..
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~~ 33 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFDY 33 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEEC
Confidence 5789999999999888877663 33566677653
No 213
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=21.75 E-value=1.5e+03 Score=27.46 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047130 269 NLGIMVVYLLAVVFVVRPAMLWVVK 293 (815)
Q Consensus 269 ~~~~~i~~~~~~~~v~r~~~~~l~~ 293 (815)
.+++.++...+.++++.|...|+..
T Consensus 418 Pllt~li~~~l~~~viGp~~~~i~~ 442 (631)
T PRK09765 418 PVLGTLGAGSLMLFVVGEPVAWINN 442 (631)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455556666676666654
No 214
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=21.63 E-value=1.1e+03 Score=26.00 Aligned_cols=248 Identities=15% Similarity=0.144 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHhhhCCChhHHHHHhhhhccccccc-ccccccccccCCCchhHHHHHHHHHH------HHHHHHhh
Q 047130 78 IIVAFAVTHACHFVLKRFGIPMIASQITGGLILGQAIPG-LNRYYKHVLFSDTSLGTLDLVATFGY------ILFQFLTG 150 (815)
Q Consensus 78 i~lil~~~~~~~~llkrl~~P~iv~~IlaGillGP~~lg-~~~~~~~~lfp~~~~~~l~~la~lgl------i~~lF~~G 150 (815)
+..+.+-..+++.-.||---|.+.--|-.|+++.+.-+. ..+.. ........+..+-+.|+ .++.+-+|
T Consensus 5 ~vMi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~~~~~~----~~~~~~g~l~~~~~~gi~~~l~P~LIF~GIG 80 (360)
T PF03977_consen 5 IVMILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSGLMDQP----VGGGEIGGLQPIYYFGISNGLFPPLIFMGIG 80 (360)
T ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchhhcccc----cccCCCChHHHHHHHhhhcchhhHHHHHHHh
Confidence 344444444555566666678888888889888763221 11100 00011223343333333 34455678
Q ss_pred cccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhccHHHHHHHHHHhhhccChh
Q 047130 151 VKMDVSMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSRFPSIACLVSDLRIINSEL 230 (815)
Q Consensus 151 le~d~~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ll~s~~ 230 (815)
--+|+.-+..+.|..+.-+.+++-+ | .++..+..++. +..++..+|++-..=.+..+.- ..++.
T Consensus 81 AmtDFgpllanP~~~llGaaAQ~Gi-f-~t~~~A~~lGf-------~~~eAAsIgIIGgADGPtsIf~---s~~LA---- 144 (360)
T PF03977_consen 81 AMTDFGPLLANPKTLLLGAAAQFGI-F-ATFLGAILLGF-------TPKEAASIGIIGGADGPTSIFV---SSKLA---- 144 (360)
T ss_pred HHHhhHHHHhCHHHHHHHHHHHHhH-H-HHHHHHHHhCC-------CHHHhhHhhhcccCCCcHHHHH---HHhhh----
Confidence 8999999999998855433333322 1 12222333332 2445555555554433222211 11211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHc--CCCCCCch-
Q 047130 231 GRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVRPAMLWVV----KQT--PEGKPVNS- 303 (815)
Q Consensus 231 g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~l~----~r~--~~~~~~~e- 303 (815)
-|+++-+..+. -.+..++-.+-+|+++-+. |+. ++.|+++.
T Consensus 145 ----------p~LlgpIaVaA----------------------YsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~ 192 (360)
T PF03977_consen 145 ----------PHLLGPIAVAA----------------------YSYMALVPIIQPPIMKLLTTKKERKIRMKQLRPVSKT 192 (360)
T ss_pred ----------HHHHHHHHHHH----------------------HHHHHHHhhhhhHHHHHhcCHHHHhccCCCCCCCChH
Confidence 12222111100 0011122223344444332 221 22233332
Q ss_pred hHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhccc
Q 047130 304 LHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLL 380 (815)
Q Consensus 304 ~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~ 380 (815)
..+.+-+..+.+++.+.- .-.+.+|.+++|-.+.+.. ..+++.+..+.-..++..-+.=..+|...+-+.+.+.
T Consensus 193 ekiiFpivv~~~~~ll~P--~a~pLig~Lm~Gnl~rEsg-v~~rLs~taqn~l~nivTi~LGl~vGat~~a~~fL~~ 266 (360)
T PF03977_consen 193 EKIIFPIVVTILVGLLLP--SAAPLIGMLMFGNLLRESG-VVERLSKTAQNELMNIVTIFLGLTVGATMTAETFLNP 266 (360)
T ss_pred HHHHHHHHHHHHHHHHcc--chHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhcCH
Confidence 345555555555555532 2368899999999999874 3344444443333333333344567888877776655
No 215
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.40 E-value=8.9e+02 Score=24.79 Aligned_cols=75 Identities=13% Similarity=0.032 Sum_probs=37.1
Q ss_pred cchHHHHHHHHHHHhcCcceEEEEEEEecCCCCh--hHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHH
Q 047130 558 YSENVILSFKLFEEKNWGTACVYPFTAISPPKLM--HEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSV 635 (815)
Q Consensus 558 ~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~m--~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~V 635 (815)
+...+.+.+++..++. +..+..+. ...+. ..+..+.+..+++|-||+....... .... -+.
T Consensus 13 ~~~~~~~~i~~~~~~~--g~~~~~~~---~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~-----------~~~~-l~~ 75 (277)
T cd06319 13 FWQIMGRGVKSKAKAL--GYDAVELS---AENSAKKELENLRTAIDKGVSGIIISPTNSSA-----------AVTL-LKL 75 (277)
T ss_pred HHHHHHHHHHHHHHhc--CCeEEEec---CCCCHHHHHHHHHHHHhcCCCEEEEcCCchhh-----------hHHH-HHH
Confidence 4455667777766653 33332221 11222 2234444556889988764321100 0011 144
Q ss_pred hhcCCCceEEEeccC
Q 047130 636 LERAPCSVGILIDRG 650 (815)
Q Consensus 636 l~~ApCsVgIlvdrg 650 (815)
++++.+|| |++|+.
T Consensus 76 ~~~~~ipv-V~~~~~ 89 (277)
T cd06319 76 AAQAKIPV-VIADIG 89 (277)
T ss_pred HHHCCCCE-EEEecC
Confidence 56678898 556764
No 216
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=21.21 E-value=2.5e+02 Score=29.83 Aligned_cols=51 Identities=10% Similarity=0.021 Sum_probs=30.2
Q ss_pred ccchHHHHHHHHHHHhcCcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcC
Q 047130 557 SYSENVILSFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPF 611 (815)
Q Consensus 557 ~~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~ 611 (815)
....+++..+++..++....+-+ .. +..+.-.+...+...++++|=+|+-.
T Consensus 14 pff~~ii~gIe~~a~~~Gy~l~l-~~---t~~~~~~e~~i~~l~~~~vDGiI~~s 64 (279)
T PF00532_consen 14 PFFAEIIRGIEQEAREHGYQLLL-CN---TGDDEEKEEYIELLLQRRVDGIILAS 64 (279)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEE-EE---ETTTHHHHHHHHHHHHTTSSEEEEES
T ss_pred cHHHHHHHHHHHHHHHcCCEEEE-ec---CCCchHHHHHHHHHHhcCCCEEEEec
Confidence 34566777777776663333322 11 12223333666778889999888874
No 217
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=20.82 E-value=1.1e+03 Score=26.53 Aligned_cols=73 Identities=12% Similarity=0.101 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhccc
Q 047130 305 HIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLL 380 (815)
Q Consensus 305 ~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~ 380 (815)
.+.+-+..+++++.+.- .-.+.+|.+.+|-.+.+.+ .-+++.+..+.-..++..-+.=..+|.+.+-..+.+.
T Consensus 265 KIlFPivv~i~~~ll~P--~a~PLiGmlmfGNllrEsG-Vv~rLs~taqn~L~nivTIfLGl~VGa~~~A~~FL~~ 337 (433)
T PRK15475 265 KILFPVVLLLLVALLLP--DAAPLLGMFCFGNLMRESG-VVERLSDTVQNGLINIVTIFLGLSVGAKLVADKFLQP 337 (433)
T ss_pred hhHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCCh
Confidence 34555555555555422 2368899999999998874 3334444333332233333334567877777666655
No 218
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=20.79 E-value=3.4e+02 Score=28.09 Aligned_cols=49 Identities=14% Similarity=0.027 Sum_probs=33.7
Q ss_pred hHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHhhcc
Q 047130 156 SMIQKTGKKSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTVVHSLSR 212 (815)
Q Consensus 156 ~~l~~~~k~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts 212 (815)
+.-++..++...+-+..++.|++++.+++++++. |...+++|+.+....
T Consensus 18 ~~trk~dp~l~~~ml~a~l~~~~v~v~ig~l~~~--------~~~~~i~gi~~g~l~ 66 (224)
T PF13829_consen 18 KMTRKEDPKLPWLMLGAFLGPIAVFVLIGLLFGS--------WWYWLIIGILLGLLA 66 (224)
T ss_pred HHHHHHCcchHHHHHHHHHHHHHHHHHHHHHHcc--------HHHHHHHHHHHHHHH
Confidence 3456777777777788888888888888777763 445556666655543
Done!