Query 047130
Match_columns 815
No_of_seqs 333 out of 2175
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 13:43:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 3.6E-24 1.2E-28 233.4 6.4 303 133-472 59-385 (388)
2 3mt0_A Uncharacterized protein 99.8 1.6E-19 5.4E-24 193.4 20.7 254 495-811 8-277 (290)
3 3olq_A Universal stress protei 99.8 2.5E-19 8.4E-24 194.3 14.9 277 495-811 8-306 (319)
4 3loq_A Universal stress protei 99.8 3.4E-19 1.2E-23 191.1 13.2 265 495-812 23-292 (294)
5 3cis_A Uncharacterized protein 99.8 8.5E-19 2.9E-23 189.4 15.9 276 493-811 18-307 (309)
6 3ab8_A Putative uncharacterize 99.7 2.2E-17 7.5E-22 174.4 16.8 258 496-808 2-267 (268)
7 3fdx_A Putative filament prote 99.3 4.7E-12 1.6E-16 119.8 9.3 138 495-646 2-142 (143)
8 3s3t_A Nucleotide-binding prot 99.3 3.5E-12 1.2E-16 121.1 8.0 137 495-646 6-145 (146)
9 1mjh_A Protein (ATP-binding do 99.3 1.5E-11 5.3E-16 119.0 12.6 143 495-648 6-159 (162)
10 3hgm_A Universal stress protei 99.3 2.3E-12 8E-17 122.4 6.6 138 496-646 4-147 (147)
11 3tnj_A Universal stress protei 99.3 4.9E-12 1.7E-16 120.8 8.7 141 495-649 7-148 (150)
12 2dum_A Hypothetical protein PH 99.2 2.4E-11 8.1E-16 118.7 10.5 145 495-650 6-158 (170)
13 3idf_A USP-like protein; unive 99.2 3E-11 1E-15 113.5 10.6 133 496-646 3-137 (138)
14 3dlo_A Universal stress protei 99.2 2.5E-11 8.4E-16 117.1 9.2 130 494-646 24-154 (155)
15 2z08_A Universal stress protei 99.2 1.8E-11 6.1E-16 115.1 7.8 132 496-646 4-136 (137)
16 2gm3_A Unknown protein; AT3G01 99.2 8.4E-11 2.9E-15 115.4 12.8 144 495-650 6-165 (175)
17 1tq8_A Hypothetical protein RV 99.2 3.4E-11 1.2E-15 117.2 9.4 141 493-649 16-159 (163)
18 3fg9_A Protein of universal st 99.2 2.5E-11 8.7E-16 116.7 8.3 137 493-646 14-155 (156)
19 1jmv_A USPA, universal stress 99.1 1.3E-10 4.3E-15 109.6 9.9 134 496-649 4-139 (141)
20 1q77_A Hypothetical protein AQ 99.0 5.7E-10 2E-14 104.7 7.7 128 495-646 5-137 (138)
21 3mt0_A Uncharacterized protein 98.9 2.1E-09 7E-14 114.5 7.5 138 493-650 133-278 (290)
22 3olq_A Universal stress protei 98.8 6.6E-09 2.2E-13 112.0 7.2 144 494-651 156-308 (319)
23 3loq_A Universal stress protei 98.7 1.6E-08 5.6E-13 107.7 8.9 123 492-648 168-290 (294)
24 3cis_A Uncharacterized protein 98.6 6.1E-08 2.1E-12 104.1 8.2 134 495-647 172-305 (309)
25 3s3t_A Nucleotide-binding prot 98.5 2.3E-07 7.9E-12 87.5 9.8 128 664-809 4-146 (146)
26 3hgm_A Universal stress protei 98.5 3.2E-07 1.1E-11 86.5 9.3 129 665-808 2-147 (147)
27 3idf_A USP-like protein; unive 98.5 7.6E-07 2.6E-11 83.0 11.3 126 666-808 2-137 (138)
28 2z08_A Universal stress protei 98.4 7.1E-07 2.4E-11 83.3 9.2 128 665-808 2-136 (137)
29 3dlo_A Universal stress protei 98.4 2.8E-07 9.5E-12 88.5 6.4 128 664-809 23-155 (155)
30 3tnj_A Universal stress protei 98.4 5.8E-07 2E-11 85.2 8.0 129 665-811 6-148 (150)
31 1mjh_A Protein (ATP-binding do 98.4 1.4E-06 4.9E-11 83.6 10.7 130 665-811 5-160 (162)
32 3fdx_A Putative filament prote 98.3 1.6E-06 5.6E-11 81.2 10.1 126 666-808 2-142 (143)
33 1tq8_A Hypothetical protein RV 98.3 1.5E-06 5E-11 84.1 9.6 133 663-812 15-160 (163)
34 2dum_A Hypothetical protein PH 98.3 1.8E-06 6.1E-11 83.7 9.7 131 664-811 4-157 (170)
35 3fg9_A Protein of universal st 98.3 1.7E-06 5.8E-11 82.6 9.4 129 663-809 13-156 (156)
36 3ab8_A Putative uncharacterize 98.2 1.4E-06 4.7E-11 91.2 7.6 113 495-646 155-267 (268)
37 1jmv_A USPA, universal stress 98.2 4.2E-06 1.4E-10 78.2 9.4 125 665-811 2-139 (141)
38 2gm3_A Unknown protein; AT3G01 98.0 2.8E-05 9.5E-10 75.6 11.2 132 664-811 4-164 (175)
39 1q77_A Hypothetical protein AQ 97.8 2.5E-05 8.6E-10 72.6 7.1 39 665-703 4-43 (138)
40 3zux_A Transporter, ASBTNM; tr 97.4 0.071 2.4E-06 57.2 28.3 69 398-469 240-309 (332)
41 3g40_A Na-K-CL cotransporter; 90.1 4.4 0.00015 41.8 14.1 223 492-769 18-255 (294)
42 1zun_A Sulfate adenylyltransfe 63.2 8.1 0.00028 40.9 5.7 39 666-704 47-85 (325)
43 3zux_A Transporter, ASBTNM; tr 56.1 1.1E+02 0.0039 32.0 13.3 93 332-434 28-122 (332)
44 1ni5_A Putative cell cycle pro 55.5 33 0.0011 37.8 9.2 96 665-768 13-118 (433)
45 1sur_A PAPS reductase; assimil 51.6 48 0.0016 32.3 8.9 35 666-704 45-79 (215)
46 2l0e_A Sodium/hydrogen exchang 46.4 3.4 0.00012 28.0 -0.4 28 198-225 3-30 (33)
47 3fwk_A FMN adenylyltransferase 44.7 15 0.00052 38.4 3.9 92 666-769 59-171 (308)
48 1efp_B ETF, protein (electron 44.4 18 0.00062 36.7 4.4 95 672-781 33-141 (252)
49 1o97_C Electron transferring f 41.6 17 0.00058 37.2 3.7 98 670-781 31-140 (264)
50 1efv_B Electron transfer flavo 41.5 19 0.00064 36.7 4.0 96 671-781 35-144 (255)
51 3a2k_A TRNA(Ile)-lysidine synt 39.9 29 0.001 38.5 5.7 60 665-729 18-77 (464)
52 2wsi_A FAD synthetase; transfe 39.8 34 0.0012 35.7 5.8 96 666-770 54-169 (306)
53 1wy5_A TILS, hypothetical UPF0 39.3 31 0.0011 36.1 5.5 40 665-704 24-64 (317)
54 1iv0_A Hypothetical protein; r 32.1 1.1E+02 0.0038 25.9 6.8 56 590-649 38-93 (98)
55 3gxq_A Putative regulator of t 31.7 25 0.00086 24.9 2.1 26 576-605 11-36 (54)
56 2oq2_A Phosphoadenosine phosph 31.5 33 0.0011 34.8 3.9 39 667-706 43-81 (261)
57 2k4m_A TR8_protein, UPF0146 pr 26.1 66 0.0023 29.8 4.5 33 584-616 95-127 (153)
58 4hqo_A Sporozoite surface prot 23.7 2.6E+02 0.0088 27.9 9.1 77 665-757 126-204 (266)
59 3o74_A Fructose transport syst 23.2 1E+02 0.0034 30.4 5.9 75 558-651 16-92 (272)
60 3gbv_A Putative LACI-family tr 22.0 5.7E+02 0.019 25.0 12.1 51 558-610 23-76 (304)
61 3dbi_A Sugar-binding transcrip 21.9 1.9E+02 0.0065 29.6 8.0 75 558-651 77-153 (338)
62 3gr7_A NADPH dehydrogenase; fl 21.6 2E+02 0.0067 30.3 7.9 114 628-768 197-310 (340)
63 1z41_A YQJM, probable NADH-dep 21.5 4.8E+02 0.016 27.1 11.0 114 628-768 197-310 (338)
64 3kru_A NADH:flavin oxidoreduct 21.5 5.6E+02 0.019 26.7 11.5 122 619-768 187-310 (343)
65 1vhx_A Putative holliday junct 20.7 1.5E+02 0.0051 27.2 5.9 61 588-650 40-100 (150)
66 2k3c_A TMIX peptide; membrane 20.6 2.7 9.2E-05 28.5 -4.5 27 315-341 5-31 (33)
67 4b4t_W RPN10, 26S proteasome r 20.0 2.2E+02 0.0075 28.9 7.5 53 667-727 108-163 (268)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.89 E-value=3.6e-24 Score=233.42 Aligned_cols=303 Identities=12% Similarity=0.089 Sum_probs=218.4
Q ss_pred HHHHHHHHHHHHHHHHhhcccChhHH----Hhcch--hhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHH
Q 047130 133 TLDLVATFGYILFQFLTGVKMDVSMI----QKTGK--KSLFTGLLTLLIPFLLGAAALEKMSRILGIGMEDKMKLWVVTV 206 (815)
Q Consensus 133 ~l~~la~lgli~~lF~~Gle~d~~~l----~~~~k--~~~~i~~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~ig~ 206 (815)
..+.+.+-.+.+|+|.+|+|+|.+.+ ++.+| .+...++.|+++|++++.. +.. ....+.....
T Consensus 59 l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~~----~~~-------~~~~~~~gw~ 127 (388)
T 1zcd_A 59 MLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLA----FNY-------ADPITREGWA 127 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGG----GCC-------SSTTHHHHTS
T ss_pred HHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHH----Hhc-------CChhhhhhhH
Confidence 45677788999999999999999887 55544 3788899999999987422 111 1122445556
Q ss_pred HHhhccHHHHHHHHHHhhh-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 047130 207 VHSLSRFPSIACLVSDLRI-INSELGRLGLSCALVSEMIGLILTRSAIWIASIYHAPLHSAYRNLGIMVVYLLAVVFVVR 285 (815)
Q Consensus 207 ~ls~Ts~~vv~~iL~el~l-l~s~~g~lals~a~v~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r 285 (815)
+.+.|+.+....++..++. .++..++.+++.|++||+.+|++++++.. ++.+ .. .+...+++++..
T Consensus 128 ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt----~~~~---~~-~l~~~~~~~~~~----- 194 (388)
T 1zcd_A 128 IPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT----NDLS---MA-SLGVAAVAIAVL----- 194 (388)
T ss_dssp SSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC----CCCC---HH-HHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc----CCcc---HH-HHHHHHHHHHHH-----
Confidence 6777999999999998755 55667799999999999999999988753 2222 11 111111111111
Q ss_pred HHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHhhcCCCC----CchhHHHHhhhhhHHHhhH
Q 047130 286 PAMLWVVKQTPEGKPVNSLHIHNIIMLALGAGYISDLFGQHVYFGPFVFGLAVPAGP----PLGSALVEKLDPMVSGLFI 361 (815)
Q Consensus 286 ~~~~~l~~r~~~~~~~~e~~~~~~l~~~l~~~~i~e~~G~~~~lGafvaGl~~~~~~----~~~~~l~~kl~~~~~~l~l 361 (815)
++.+|.. ++....+..+ . +.+.+.++..|+|+.+|+|++|+++|..+ +..+++++++++++..+++
T Consensus 195 ----~~l~r~~----v~~~~~y~~l-g-l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~il 264 (388)
T 1zcd_A 195 ----AVLNLCG----ARRTGVYILV-G-VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLIL 264 (388)
T ss_dssp ----HHHHHTT----CCCTHHHHHH-H-HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHH
T ss_pred ----HHHHHhc----chhHHHHHHH-H-HHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHH
Confidence 2223322 1223333333 2 24567779999999999999999999853 3478899999999999999
Q ss_pred HHH-HHhhcccCChhhhcccchhHHHHHHHHHHHHHHHHHHHH----HHhhhhc------CCChHHHHHHHHHHhhhhhH
Q 047130 362 PLV-VTSASMRTNLSDIKLLDDNLAKSTAVIVAVVVLAKVATT----MIPPLYC------KVPKRDAFALALIMSTKGIV 430 (815)
Q Consensus 362 PlF-F~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~~~K~i~~----~l~~~~~------~~~~~~~~~lgl~m~~kG~v 430 (815)
|+| |+..|+++|...+...... ....+++..+++|++|+ ++..|+. +++|+|...+|++++.++++
T Consensus 265 PlFaFanaGv~l~~~~~~~l~~~---~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftm 341 (388)
T 1zcd_A 265 PLFAFANAGVSLQGVTLDGLTSI---LPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTM 341 (388)
T ss_dssp HHHHHHHCCCCCSSSCCCTHHHH---SSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHH
T ss_pred HHHHHHhcCeeecccchhhccCh---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHH
Confidence 999 9999999997432211010 12244445588999884 4444444 89999999999999999999
Q ss_pred HHHHHhhcccccc--cchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047130 431 EISTYNISRNIES--LTDQMFSFLTVEILVTAIIIPILVKFLYD 472 (815)
Q Consensus 431 ~li~~~~~~~~~~--i~~~~~~~lv~~~ll~t~i~~~lv~~ly~ 472 (815)
++++++++++.+. +.++.+..+++++++++++++.+.++.++
T Consensus 342 sL~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~~ 385 (388)
T 1zcd_A 342 SIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRLR 385 (388)
T ss_dssp HHHHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC-
T ss_pred HHHHHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999998876 36677999999999999998888776553
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.83 E-value=1.6e-19 Score=193.38 Aligned_cols=254 Identities=13% Similarity=0.081 Sum_probs=176.4
Q ss_pred ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHH-HHHHHHHhc
Q 047130 495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVIL-SFKLFEEKN 573 (815)
Q Consensus 495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~-af~~~~~~~ 573 (815)
-|||+|+|++++...+++.+..++ +..+..++++|+++ + + ..++.++ ..+.+. .
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la--~~~~a~l~ll~v~~-~----------~----------~~~~~l~~~~~~~~-~- 62 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIA--GVTQSHLHLLVCEK-R----------R----------DHSAALNDLAQELR-E- 62 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHH--HHHCCEEEEEEECS-S----------S----------CCHHHHHHHHHHHH-H-
T ss_pred ceEEEEeCCCccchHHHHHHHHHH--HhcCCeEEEEEeeC-c----------H----------HHHHHHHHHHHHHh-h-
Confidence 489999999999999999999998 44678999999987 1 0 0111222 222222 2
Q ss_pred CcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEeccCCcc
Q 047130 574 WGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGRIG 653 (815)
Q Consensus 574 ~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdrg~~~ 653 (815)
.+++++..+..+ .+..+.|++.|+++++||||||.|++.+.++.+ ++++.++|++++||||.++.....
T Consensus 63 -~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~------~gs~~~~vl~~~~~PVlvv~~~~~-- 131 (290)
T 3mt0_A 63 -EGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAI------LTPDDWKLLRFAPCPVLMTKTARP-- 131 (290)
T ss_dssp -TTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTS------CCHHHHHHHHHCSSCEEEECCCSC--
T ss_pred -CCCeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCchhhcc------cCHHHHHHHhcCCCCEEEecCCCC--
Confidence 457777776533 478999999999999999999999987776665 444555999999999999853321
Q ss_pred cccccccccCCcceEEEEecCCcc-------HHHHHHHHHHHhhCCCeEEEEEEeeecCccc------c-ccchhhhhHH
Q 047130 654 RFISSELSLGSSFRVAMIFLGGSD-------DREALTLAKRMSQNTSINLTVFRFIVKTDEM------I-STNWEKVLDS 719 (815)
Q Consensus 654 ~~~~~~~~~~~~~~I~~~f~gg~D-------dreAL~~a~rma~~~~v~ltvl~~~~~~~~~------~-~~~~~~~~d~ 719 (815)
. ..++|+++++|+++ .+.|+++|.++++..+++++++|+.++.... . .++.+++ .+
T Consensus 132 --------~-~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~-~~ 201 (290)
T 3mt0_A 132 --------W-TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEAR-YR 201 (290)
T ss_dssp --------S-TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHH-HH
T ss_pred --------C-CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHH-HH
Confidence 1 46899999999998 7999999999999999999999998642210 0 0111111 12
Q ss_pred HHHHHhcccCCC-CCCEEEEEEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCC
Q 047130 720 EVLKEVKPENNF-NQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTED 798 (815)
Q Consensus 720 ~~l~~~~~~~~~-~~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d 798 (815)
+.++++..++.- .......+- +-++++.+++++.+. ||++||++++ .|+.+| =+|-..+-+...
T Consensus 202 ~~l~~~~~~~g~~~~~~~v~~g--~~~~~I~~~a~~~~~--dLiVmG~~g~------~~~~~~----~~Gsv~~~vl~~- 266 (290)
T 3mt0_A 202 EACRTFQAEYGFSDEQLHIEEG--PADVLIPRTAQKLDA--VVTVIGTVAR------TGLSGA----LIGNTAEVVLDT- 266 (290)
T ss_dssp HHHHHHHHHHTCCTTTEEEEES--CHHHHHHHHHHHHTC--SEEEEECCSS------CCGGGC----CSCHHHHHHHTT-
T ss_pred HHHHHHHHHcCCCcceEEEecc--CHHHHHHHHHHhcCC--CEEEECCCCC------cCCcce----ecchHHHHHHhc-
Confidence 334443333211 112222222 223456777777554 9999999987 667665 478888877776
Q ss_pred CCCcccEEEEeee
Q 047130 799 LPGRYSVLVVQQQ 811 (815)
Q Consensus 799 ~~~~~SvLvvqq~ 811 (815)
++.+||||..+
T Consensus 267 --~~~pVLvv~~~ 277 (290)
T 3mt0_A 267 --LESDVLVLKPD 277 (290)
T ss_dssp --CSSEEEEECCH
T ss_pred --CCCCEEEECCC
Confidence 67799999754
No 3
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.80 E-value=2.5e-19 Score=194.28 Aligned_cols=277 Identities=9% Similarity=0.038 Sum_probs=178.8
Q ss_pred ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhc-
Q 047130 495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKN- 573 (815)
Q Consensus 495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~- 573 (815)
-|||+|+|+++++..+++.+..++ ++.+..++++|+++-.....+....... .........++..+.++++.+..
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA--~~~~a~l~ll~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~ 83 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIV--QRNGGRIKAFLPVYDLSYDMTTLLSPDE--RNAMRKGVINQKTAWIKQQARYYL 83 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHH--HHHCCEEEEEEEECCGGGGCTTTSCHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCcccHHHHHHHHHHH--HHcCCeEEEEEEecccchhhccccChhh--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999999998 4467899999998632110000000000 00000011122233344443322
Q ss_pred CcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEeccCCcc
Q 047130 574 WGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGRIG 653 (815)
Q Consensus 574 ~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdrg~~~ 653 (815)
..+++++..+... .+..+.|++.|+++++||||||.|++.+.++.+.+++ .++|++++||||.++.++..
T Consensus 84 ~~~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~------~~~vl~~~~~PVlvv~~~~~-- 153 (319)
T 3olq_A 84 EAGIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPL------DWQLLRKCPAPVWMVKDKEW-- 153 (319)
T ss_dssp HTTCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHH------HHHHHHHCSSCEEEEESSCC--
T ss_pred hcCCeEEEEEEec--CChHHHHHHHHHhcCCCEEEEecCcCchhhccccccc------HHHHHhcCCCCEEEecCccc--
Confidence 1567888777622 4899999999999999999999999887776664444 45999999999999864421
Q ss_pred cccccccccCCcceEEEEecCCcc-------HHHHHHHHHHHhhCC--CeEEEEEEeeecCcccc--------ccchh--
Q 047130 654 RFISSELSLGSSFRVAMIFLGGSD-------DREALTLAKRMSQNT--SINLTVFRFIVKTDEMI--------STNWE-- 714 (815)
Q Consensus 654 ~~~~~~~~~~~~~~I~~~f~gg~D-------dreAL~~a~rma~~~--~v~ltvl~~~~~~~~~~--------~~~~~-- 714 (815)
...++|+++++|.++ ++.|+++|.++++.. +++++++|+..+..... .++..
T Consensus 154 ---------~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~ 224 (319)
T 3olq_A 154 ---------PEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNA 224 (319)
T ss_dssp ---------CTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHH
T ss_pred ---------ccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHH
Confidence 236799999999995 499999999999987 99999999986522110 00011
Q ss_pred -hhhHHHHHHHhcccCCCC-CCEEEEEEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchh
Q 047130 715 -KVLDSEVLKEVKPENNFN-QRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGN 792 (815)
Q Consensus 715 -~~~d~~~l~~~~~~~~~~-~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd 792 (815)
++..++.++++..++... ......+. +-..++.+++++.+ .||++||++++ .|+.+| =+|-+.+
T Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~v~~g--~~~~~I~~~a~~~~--~dLiV~G~~g~------~~~~~~----~~Gsv~~ 290 (319)
T 3olq_A 225 LRGQHLIAMKELRQKFSIPEEKTHVKEG--LPEQVIPQVCEELN--AGIVVLGILGR------TGLSAA----FLGNTAE 290 (319)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEES--CHHHHHHHHHHHTT--EEEEEEECCSC------CSTHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEecC--CcHHHHHHHHHHhC--CCEEEEeccCc------cCCccc----cccHHHH
Confidence 111124444444333211 11222221 12344666666644 59999999987 566655 4777777
Q ss_pred hhhcCCCCCcccEEEEeee
Q 047130 793 CLVTEDLPGRYSVLVVQQQ 811 (815)
Q Consensus 793 ~las~d~~~~~SvLvvqq~ 811 (815)
-+... ++.+||||..+
T Consensus 291 ~vl~~---~~~pVLvv~~~ 306 (319)
T 3olq_A 291 QLIDH---IKCDLLAIKPD 306 (319)
T ss_dssp HHHTT---CCSEEEEECCT
T ss_pred HHHhh---CCCCEEEECCC
Confidence 77766 67799999765
No 4
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.79 E-value=3.4e-19 Score=191.15 Aligned_cols=265 Identities=14% Similarity=0.068 Sum_probs=175.8
Q ss_pred ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcC
Q 047130 495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNW 574 (815)
Q Consensus 495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 574 (815)
-|||+|+|+++++..+++.+..++ +..+..++++|+++.+..... .................++.++.+.+..+.
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA--~~~~a~l~ll~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 97 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFK--KVGVEEIGVLFVINLTKLSTV-SGGIDIDHYIDEMSEKAEEVLPEVAQKIEA-- 97 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHH--HTTCCEEEEECCEECTTC------CCCTTHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ccEEEecCCCHHHHHHHHHHHHHH--hhcCCEEEEEEEecCcccccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 489999999999999999999998 457899999999986542110 000000000000011223333333333322
Q ss_pred cceEEEE-EEE-ecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEeccCCc
Q 047130 575 GTACVYP-FTA-ISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRGRI 652 (815)
Q Consensus 575 ~~v~v~~-~~~-vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdrg~~ 652 (815)
.+++++. .+. .+ +..+.| .|+++++||||||.|++.+..+.+ ++++.++|++++||||.++.+...
T Consensus 98 ~g~~~~~~~v~~~g---~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~PVlvv~~~~~- 165 (294)
T 3loq_A 98 AGIKAEVIKPFPAG---DPVVEI--IKASENYSFIAMGSRGASKFKKIL------LGSVSEGVLHDSKVPVYIFKHDMV- 165 (294)
T ss_dssp TTCEEEECSSCCEE---CHHHHH--HHHHTTSSEEEEECCCCCHHHHHH------HCCHHHHHHHHCSSCEEEECCCTT-
T ss_pred cCCCcceeEeeccC---ChhHhe--eeccCCCCEEEEcCCCCcccccee------eccHHHHHHhcCCCCEEEecCccc-
Confidence 4677776 443 34 889999 999999999999999987665544 344556999999999999854431
Q ss_pred ccccccccccCCcceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccccchhhhhHHHHHHHhcccCCCC
Q 047130 653 GRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFN 732 (815)
Q Consensus 653 ~~~~~~~~~~~~~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 732 (815)
. ....++|+++++|.+++++|+++|.++++..+++++++++.++.. .++.++ ++.+.++.. +.
T Consensus 166 ---~-----~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~------~~~~l~-~~~~~l~~~--~~ 228 (294)
T 3loq_A 166 ---V-----NSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD------KTADLR-VMEEVIGAE--GI 228 (294)
T ss_dssp ---T-----TCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC------CHHHHH-HHHHHHHHT--TC
T ss_pred ---c-----CccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch------HHHHHH-HHHHHHHHc--CC
Confidence 0 134679999999999999999999999999999999999986522 122222 333333332 11
Q ss_pred CCEEEEEEEecCc---HHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEEe
Q 047130 733 QRVKYVVEMVNEG---QETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQ 809 (815)
Q Consensus 733 ~~v~y~e~~V~~g---~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvvq 809 (815)
.+.+ .+..| +++.+++++. ++||++||++++ .++.+| =+|-..+-+... ++.+||||.
T Consensus 229 -~~~~---~~~~g~~~~~I~~~a~~~--~~dLlV~G~~~~------~~~~~~----~~Gs~~~~vl~~---~~~pvLvv~ 289 (294)
T 3loq_A 229 -EVHV---HIESGTPHKAILAKREEI--NATTIFMGSRGA------GSVMTM----ILGSTSESVIRR---SPVPVFVCK 289 (294)
T ss_dssp -CEEE---EEECSCHHHHHHHHHHHT--TCSEEEEECCCC------SCHHHH----HHHCHHHHHHHH---CSSCEEEEC
T ss_pred -cEEE---EEecCCHHHHHHHHHHhc--CcCEEEEeCCCC------CCccce----eeCcHHHHHHhc---CCCCEEEEC
Confidence 1222 22233 3455555553 459999999987 566554 467777777765 567999997
Q ss_pred eec
Q 047130 810 QQQ 812 (815)
Q Consensus 810 q~~ 812 (815)
+..
T Consensus 290 ~~~ 292 (294)
T 3loq_A 290 RGD 292 (294)
T ss_dssp SCT
T ss_pred CCC
Confidence 753
No 5
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.79 E-value=8.5e-19 Score=189.44 Aligned_cols=276 Identities=16% Similarity=0.140 Sum_probs=175.5
Q ss_pred ccceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCc-cc-hhhhhccccccCCcccchHHHHHHHHHH
Q 047130 493 GELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAA-PL-FISHKMQKKTVSNRSYSENVILSFKLFE 570 (815)
Q Consensus 493 ~elrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~-~~-~~~~~~~~~~~~~~~~~~~i~~af~~~~ 570 (815)
.--|||+|+|++++...+++.+..++ ++.+..++++|+++ +.... +. ....+.. .......++.++.+.+..
T Consensus 18 ~~~~ILv~~D~s~~s~~al~~A~~lA--~~~~a~l~ll~v~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~ 91 (309)
T 3cis_A 18 SSLGIIVGIDDSPAAQVAVRWAARDA--ELRKIPLTLVHAVS-PEVATWLEVPLPPGVL---RWQQDHGRHLIDDALKVV 91 (309)
T ss_dssp CTTEEEEECCSSHHHHHHHHHHHHHH--HHHTCCEEEEEECC-CCCCCTTCCCCCHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHHH--HhcCCcEEEEEEec-CcccccccCCCCchhh---HHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999998 44678999999987 22111 00 0000000 000111222222222222
Q ss_pred Hhc---CcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEe
Q 047130 571 EKN---WGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILI 647 (815)
Q Consensus 571 ~~~---~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlv 647 (815)
+.. ..+++++..+..+ +..+.|++.|+ ++||||||.|++.+..+.+ ++++.++|++++||||.++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~g---~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~PVlvv~ 160 (309)
T 3cis_A 92 EQASLRAGPPTVHSEIVPA---AAVPTLVDMSK--DAVLMVVGCLGSGRWPGRL------LGSVSSGLLRHAHCPVVIIH 160 (309)
T ss_dssp HHHCSSSCCSCEEEEEESS---CHHHHHHHHGG--GEEEEEEESSCTTCCTTCC------SCHHHHHHHHHCSSCEEEEC
T ss_pred HHhcccCCCceEEEEEecC---CHHHHHHHHhc--CCCEEEECCCCCccccccc------cCcHHHHHHHhCCCCEEEEc
Confidence 221 1257777766544 89999999996 8999999999987776655 45555699999999999986
Q ss_pred ccCCcccccccccccCCcceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccc--cc---cch----hhhhH
Q 047130 648 DRGRIGRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEM--IS---TNW----EKVLD 718 (815)
Q Consensus 648 drg~~~~~~~~~~~~~~~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~--~~---~~~----~~~~d 718 (815)
.+.. .. .....++|+++++|+++++.|+++|.++++..+++++++++.++.... .. ++. ++.++
T Consensus 161 ~~~~--~~-----~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (309)
T 3cis_A 161 DEDS--VM-----PHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLA 233 (309)
T ss_dssp TTCC--CS-----CSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHH
T ss_pred CCcc--cC-----CCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHH
Confidence 4431 00 012357999999999999999999999999999999999998652211 00 111 11122
Q ss_pred HHHHHHhcccCCCCCCEEEEEEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCC
Q 047130 719 SEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTED 798 (815)
Q Consensus 719 ~~~l~~~~~~~~~~~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d 798 (815)
++++++..++.+ -.+.+ .+..|. ..+.|.+...+.||++||++++ .++.+| =+|-+.+-+...
T Consensus 234 -~~~~~~~~~~~~-~~~~~---~~~~g~-~~~~I~~~a~~adliV~G~~~~------~~~~~~----l~Gsv~~~vl~~- 296 (309)
T 3cis_A 234 -ERLAGWQERYPN-VAITR---VVVRDQ-PARQLVQRSEEAQLVVVGSRGR------GGYAGM----LVGSVGETVAQL- 296 (309)
T ss_dssp -HHHTTHHHHCTT-SCEEE---EEESSC-HHHHHHHHHTTCSEEEEESSCS------SCCTTC----SSCHHHHHHHHH-
T ss_pred -HHHHHHHhhCCC-CcEEE---EEEcCC-HHHHHHHhhCCCCEEEECCCCC------CCcccc----ccCcHHHHHHhc-
Confidence 333333322111 12222 233442 4444444444789999999987 566554 467777777665
Q ss_pred CCCcccEEEEeee
Q 047130 799 LPGRYSVLVVQQQ 811 (815)
Q Consensus 799 ~~~~~SvLvvqq~ 811 (815)
++.+||||..+
T Consensus 297 --~~~pVlvv~~~ 307 (309)
T 3cis_A 297 --ARTPVIVARES 307 (309)
T ss_dssp --CSSCEEEECC-
T ss_pred --CCCCEEEeCCC
Confidence 56799999754
No 6
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.74 E-value=2.2e-17 Score=174.37 Aligned_cols=258 Identities=13% Similarity=0.060 Sum_probs=167.1
Q ss_pred eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhh-ccccc----cC-CcccchHHHHHHHHH
Q 047130 496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHK-MQKKT----VS-NRSYSENVILSFKLF 569 (815)
Q Consensus 496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~-~~~~~----~~-~~~~~~~i~~af~~~ 569 (815)
|||+|+|++++...+++.+..++ ++.+..++++|+++.+....+...... ..... .. .....++..+.++++
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLA--YKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERV 79 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHH--HHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHH--HHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999998 446789999999885421000000000 00000 00 001112222333333
Q ss_pred HHhc-CcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCcc-ccCCccccCChhhHHHHHHHhhcCCCceEEEe
Q 047130 570 EEKN-WGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKW-FIDGSIESDDNTKRALNCSVLERAPCSVGILI 647 (815)
Q Consensus 570 ~~~~-~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~-~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlv 647 (815)
.+.. ..+++++..+..+ +..+.|++. ++++||||||.|++. +.++.+ ++++.++|++++||||.++.
T Consensus 80 ~~~~~~~g~~~~~~~~~g---~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~------~Gs~~~~v~~~a~~PVlvv~ 148 (268)
T 3ab8_A 80 RQSALAAGVAVEAVLEEG---VPHEAILRR--ARAADLLVLGRSGEAHGDGFGG------LGSTADRVLRASPVPVLLAP 148 (268)
T ss_dssp HHHHHHTTCCEEEEEEEE---CHHHHHHHH--HTTCSEEEEESSCTTSCTTCCS------CCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHhCCCCeEEEEecC---CHHHHHHhh--ccCCCEEEEeccCCCccccccc------cchhHHHHHHhCCCCEEEEC
Confidence 3221 1456677777655 899999998 899999999999987 766655 45556699999999998874
Q ss_pred ccCCcccccccccccCCcceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccccchhhhhHHHHHHHhcc
Q 047130 648 DRGRIGRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKP 727 (815)
Q Consensus 648 drg~~~~~~~~~~~~~~~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 727 (815)
.+. . ..++|+++++|+++++.|+++|.++++..+++++++++.++.. +.++.++ ++.+.++.
T Consensus 149 ~~~-----------~-~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~-----~~~~~l~-~~~~~l~~ 210 (268)
T 3ab8_A 149 GEP-----------V-ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPA-----RAEAWAL-EAEAYLRD 210 (268)
T ss_dssp SSC-----------C-CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHH-----HHHHHHH-HHHHHHHH
T ss_pred CCC-----------C-CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHH-----HHHHHHH-HHHHHHHH
Confidence 321 1 3579999999999999999999999999999999999976521 1222232 33333332
Q ss_pred cCCCCCCEEEEEEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEE
Q 047130 728 ENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLV 807 (815)
Q Consensus 728 ~~~~~~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLv 807 (815)
. +. .+.+ .+.+| +..+.|.+...++||++||+ |+.+| =+|-..+-+... ++.+|||
T Consensus 211 ~--~~-~~~~---~~~~g-~~~~~i~~~a~~~dliV~G~----------~~~~~----~~Gs~~~~vl~~---~~~pvlv 266 (268)
T 3ab8_A 211 H--GV-EASA---LVLGG-DAADHLLRLQGPGDLLALGA----------PVRRL----VFGSTAERVIRN---AQGPVLT 266 (268)
T ss_dssp T--TC-CEEE---EEECS-CHHHHHHHHCCTTEEEEEEC----------CCSCC----SSCCHHHHHHHH---CSSCEEE
T ss_pred c--CC-ceEE---EEeCC-ChHHHHHHHHHhCCEEEECC----------ccccc----EeccHHHHHHhc---CCCCEEE
Confidence 2 11 2222 23344 35555666665669999999 23332 367666666665 5668888
Q ss_pred E
Q 047130 808 V 808 (815)
Q Consensus 808 v 808 (815)
|
T Consensus 267 v 267 (268)
T 3ab8_A 267 A 267 (268)
T ss_dssp E
T ss_pred e
Confidence 6
No 7
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.30 E-value=4.7e-12 Score=119.80 Aligned_cols=138 Identities=20% Similarity=0.112 Sum_probs=96.5
Q ss_pred ceeEEeeecCCC--hHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHh
Q 047130 495 LRILACIYRPDN--IPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEK 572 (815)
Q Consensus 495 lrILv~i~~~~~--~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 572 (815)
-|||+|+|++++ +..+++.+..++ +..+..++++|+++.+........... ..........++..+.++++.++
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~ 77 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEA--RIDDAEVHFLTVIPSLPYYASLGMAYT--AELPGMDELREGSETQLKEIAKK 77 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHH--HHHTCEEEEEEEECC------------------CHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHH--HhcCCeEEEEEEecCCccccccccccc--chhhhHHHHHHHHHHHHHHHHHH
Confidence 379999999999 999999999988 446789999999986432111100000 00011122345566667777665
Q ss_pred cC-cceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130 573 NW-GTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL 646 (815)
Q Consensus 573 ~~-~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl 646 (815)
.. .++.++..+..+ +..+.|++.|+++++||||||.|+ .+..+.+ ++++.++|++++||||.++
T Consensus 78 ~~~~~~~v~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~------~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 78 FSIPEDRMHFHVAEG---SPKDKILALAKSLPADLVIIASHR-PDITTYL------LGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp SCCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEEESSC-TTCCSCS------SCHHHHHHHHHCSSEEEEE
T ss_pred cCCCCCceEEEEEec---ChHHHHHHHHHHhCCCEEEEeCCC-CCCeeee------eccHHHHHHHhCCCCEEEe
Confidence 43 345677777766 899999999999999999999995 6665555 5566679999999999886
No 8
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.29 E-value=3.5e-12 Score=121.14 Aligned_cols=137 Identities=11% Similarity=0.035 Sum_probs=97.1
Q ss_pred ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcC
Q 047130 495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNW 574 (815)
Q Consensus 495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 574 (815)
-|||+|+|++++...+++.+..++ +..+..++++|+++.+......... ... .......++..+.++++.+...
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la--~~~~a~l~ll~v~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~l~~~~~~~~ 79 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIA--QRHQANLTALYVVDDSAYHTPALDP-VLS---ELLDAEAAHAKDAMRQRQQFVA 79 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH--HHHTCEEEEEEEEECCCCCCGGGHH-HHH---HHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHH--HhcCCEEEEEEEecCcccccccccc-ccH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999998 4467899999999965432211100 000 0001112233334444433322
Q ss_pred -cce-EEEEEEEecCCCChhHHHHH-HHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130 575 -GTA-CVYPFTAISPPKLMHEDVCM-LALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL 646 (815)
Q Consensus 575 -~~v-~v~~~~~vs~~~~m~~dI~~-~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl 646 (815)
.++ .++..+..+ +..+.|++ .|+++++||||||.|++.+..+.+ ++++.++|++++||||.|+
T Consensus 80 ~~g~~~~~~~~~~g---~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 80 TTSAPNLKTEISYG---IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVA------VGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp TSSCCCCEEEEEEE---CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCS------SCHHHHHHHHHCSSEEEEE
T ss_pred hcCCcceEEEEecC---ChHHHHHHHHHhhcCCCEEEECCCCCCCcceEE------EcchHHHHhccCCCCEEEe
Confidence 456 777777666 89999999 999999999999999988776665 4555669999999999886
No 9
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.29 E-value=1.5e-11 Score=118.96 Aligned_cols=143 Identities=15% Similarity=0.127 Sum_probs=95.8
Q ss_pred ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccC----CCccch-----h-hhhccccccCCcccchHHHH
Q 047130 495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRG----RAAPLF-----I-SHKMQKKTVSNRSYSENVIL 564 (815)
Q Consensus 495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~----r~~~~~-----~-~~~~~~~~~~~~~~~~~i~~ 564 (815)
-|||+|+|+++++..+++.+..++ +..+.+++++|+++... ...+.. . +.+............++..+
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFK--TLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN 83 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTC--CSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHH--hhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence 489999999999999999999999 45688999999998531 000000 0 00000000000011122233
Q ss_pred HHHHHHHhc-CcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCce
Q 047130 565 SFKLFEEKN-WGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSV 643 (815)
Q Consensus 565 af~~~~~~~-~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsV 643 (815)
.++++.+.. ..+++++..+..+ +..+.|++.|+++++||||||.|++.+.++.+ ++++.++|++++||||
T Consensus 84 ~l~~~~~~~~~~g~~~~~~v~~G---~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~------~GSv~~~vl~~~~~pV 154 (162)
T 1mjh_A 84 KMENIKKELEDVGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEIL------LGSVTENVIKKSNKPV 154 (162)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCS------SCHHHHHHHHHCCSCE
T ss_pred HHHHHHHHHHHcCCceEEEEcCC---CHHHHHHHHHHHcCCCEEEEcCCCCCCccceE------ecchHHHHHHhCCCCE
Confidence 344433221 1457777777666 89999999999999999999999998776665 5566679999999999
Q ss_pred EEEec
Q 047130 644 GILID 648 (815)
Q Consensus 644 gIlvd 648 (815)
.|+..
T Consensus 155 lvv~~ 159 (162)
T 1mjh_A 155 LVVKR 159 (162)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99853
No 10
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.29 E-value=2.3e-12 Score=122.39 Aligned_cols=138 Identities=10% Similarity=0.043 Sum_probs=93.4
Q ss_pred eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccc--hhhhhccc-cccCCcccchHHHHHHHHHHHh
Q 047130 496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPL--FISHKMQK-KTVSNRSYSENVILSFKLFEEK 572 (815)
Q Consensus 496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~--~~~~~~~~-~~~~~~~~~~~i~~af~~~~~~ 572 (815)
|||+|+|+++++..+++.+..++ ++.+..++++|+++.+...... ........ .........++.++.+.+..+.
T Consensus 4 ~ILv~vD~s~~s~~al~~A~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (147)
T 3hgm_A 4 RIMVPVDGSKGAVKALEKGVGLQ--QLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE 81 (147)
T ss_dssp EEEEECCSBHHHHHHHHHHHHHH--HHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHH--HhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999998 4467899999999854210000 00000000 0000112223333444433333
Q ss_pred cCcceEE---EEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130 573 NWGTACV---YPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL 646 (815)
Q Consensus 573 ~~~~v~v---~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl 646 (815)
.++++ +..+..+ +..+.|++.|+++++||||||.|++.+..+.+ ++++.++|++++||||.|+
T Consensus 82 --~g~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 82 --LGVPADKVRAFVKGG---RPSRTIVRFARKRECDLVVIGAQGTNGDKSLL------LGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp --TTCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEECSSCTTCCSCCC------CCHHHHHHHHHCSSCEEEC
T ss_pred --cCCCccceEEEEecC---CHHHHHHHHHHHhCCCEEEEeCCCCcccccee------eccHHHHHHhhCCCCEEEC
Confidence 34444 6666666 89999999999999999999999988776655 4555669999999999874
No 11
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.29 E-value=4.9e-12 Score=120.76 Aligned_cols=141 Identities=11% Similarity=0.046 Sum_probs=88.4
Q ss_pred ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcC
Q 047130 495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNW 574 (815)
Q Consensus 495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 574 (815)
-|||+|+|+++++..+++.+..++ +..+..++++|+++......+.+................++..+.++++.++..
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 84 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLA--SQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLG 84 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHH--HHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHH--hhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 479999999999999999999998 446789999999885422100110000000000111223455566666665532
Q ss_pred cceE-EEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEecc
Q 047130 575 GTAC-VYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDR 649 (815)
Q Consensus 575 ~~v~-v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdr 649 (815)
+. ++..+..+ +..+.|++.|+++++||||||.|++.+.. .+-++. .++|++++||||.|+..+
T Consensus 85 --~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs~------~~~vl~~~~~pVlvv~~~ 148 (150)
T 3tnj_A 85 --IDPAHRWLVWG---EPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGST------ANSVLHYAKCDVLAVRLR 148 (150)
T ss_dssp --CCGGGEEEEES---CHHHHHHHHHHHTTCSEEEEEEC---------CCCH------HHHHHHHCSSEEEEEECC
T ss_pred --CCcceEEEecC---CHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecch------HHHHHHhCCCCEEEEeCC
Confidence 22 23444445 89999999999999999999999988776 554444 459999999999998543
No 12
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.23 E-value=2.4e-11 Score=118.74 Aligned_cols=145 Identities=12% Similarity=0.083 Sum_probs=94.0
Q ss_pred ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccc-hhhh---hc-cccccCCcccchHHHHHHHHH
Q 047130 495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPL-FISH---KM-QKKTVSNRSYSENVILSFKLF 569 (815)
Q Consensus 495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~-~~~~---~~-~~~~~~~~~~~~~i~~af~~~ 569 (815)
-|||+|+|++++...+++.+..++ +..+..++++|+++........ -... .. ...........++..+.++++
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRN--KMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEK 83 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHC--CSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCHHHHHHHHHHHHHH--HhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 379999999999999999999999 4578999999998843211000 0000 00 000000011112223333333
Q ss_pred HHhcC-cceEEEE--EEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130 570 EEKNW-GTACVYP--FTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL 646 (815)
Q Consensus 570 ~~~~~-~~v~v~~--~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl 646 (815)
.+... .++.++. .+..+ +..+.|++.|+++++||||||.|++.+..+.+ ++++.++|++++||||.|+
T Consensus 84 ~~~~~~~g~~~~~~~~~~~g---~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~------~Gsv~~~vl~~~~~PVlvv 154 (170)
T 2dum_A 84 AEEVKRAFRAKNVRTIIRFG---IPWDEIVKVAEEENVSLIILPSRGKLSLSHEF------LGSTVMRVLRKTKKPVLII 154 (170)
T ss_dssp HHHHHHHTTCSEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCCCC--TTC------CCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHcCCceeeeeEEecC---ChHHHHHHHHHHcCCCEEEECCCCCCccccce------echHHHHHHHhCCCCEEEE
Confidence 32211 3455555 55555 89999999999999999999999987766555 5566679999999999998
Q ss_pred eccC
Q 047130 647 IDRG 650 (815)
Q Consensus 647 vdrg 650 (815)
..+.
T Consensus 155 ~~~~ 158 (170)
T 2dum_A 155 KEVD 158 (170)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 6544
No 13
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.23 E-value=3e-11 Score=113.51 Aligned_cols=133 Identities=11% Similarity=0.063 Sum_probs=94.9
Q ss_pred eeEEeeecCCChHHHHHHHHHhC-CCCCCCceEEEEEeeeccCCCccchhhhhccccccCCc-ccchHHHHHHHHHHHhc
Q 047130 496 RILACIYRPDNIPAIIKFLQASC-PKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNR-SYSENVILSFKLFEEKN 573 (815)
Q Consensus 496 rILv~i~~~~~~~~~i~la~~~~-~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~-~~~~~i~~af~~~~~~~ 573 (815)
|||+|+|+++++..+++.+..++ .. .+..++++|+++.+...... .....+...... ...++.++.+.+..+.
T Consensus 3 ~ILv~~D~s~~s~~al~~a~~la~~~--~~a~l~ll~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 77 (138)
T 3idf_A 3 KLLFAIDDTEACERAAQYILDMFGKD--ADCTLTLIHVKPEFMLYGEA--VLAAYDEIEMKEEEKAKLLTQKFSTFFTE- 77 (138)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTTC--TTEEEEEEEEECCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhccC--CCCEEEEEEEecCCCccccc--ccCcHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 79999999999999999999998 44 57899999999865432110 000000000001 1222333333333322
Q ss_pred CcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130 574 WGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL 646 (815)
Q Consensus 574 ~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl 646 (815)
.+++++..+..+ +..+.|++.|+ ++||||||.|++.+.++.+ |+.++ +|++++||||.++
T Consensus 78 -~g~~~~~~v~~g---~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs~~~------~vl~~~~~pVlvv 137 (138)
T 3idf_A 78 -KGINPFVVIKEG---EPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-ASHQD------DFIQKAPIPVLIV 137 (138)
T ss_dssp -TTCCCEEEEEES---CHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CCTTC------HHHHHCSSCEEEE
T ss_pred -CCCCeEEEEecC---ChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-CcHHH------HHHhcCCCCEEEe
Confidence 467777777666 89999999998 9999999999998888888 88877 9999999999886
No 14
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.21 E-value=2.5e-11 Score=117.12 Aligned_cols=130 Identities=17% Similarity=0.127 Sum_probs=92.1
Q ss_pred cceeEEeeec-CCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHh
Q 047130 494 ELRILACIYR-PDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEK 572 (815)
Q Consensus 494 elrILv~i~~-~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 572 (815)
--|||+|+|+ ++++..+++.+..++ +..+..++++|+++.+.... .+ .....++.++.+.+..+.
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la--~~~~a~l~llhV~~~~~~~~-----~~-------~~~~~~~~l~~~~~~~~~ 89 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEA--RLRGVPVYVVHSLPGGGRTK-----DE-------DIIEAKETLSWAVSIIRK 89 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHH--HHHTCCEEEEEEECCSTTSC-----HH-------HHHHHHHHHHHHHHHHHH
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHH--HhcCCEEEEEEEEcCCCccc-----HH-------HHHHHHHHHHHHHHHHHh
Confidence 3489999999 999999999999998 44678999999998543110 00 011123333333333333
Q ss_pred cCcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130 573 NWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL 646 (815)
Q Consensus 573 ~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl 646 (815)
.++.++..+.+ ...+..+.|++.|+++++||||||.|++.+..+.+ ++++.++|++++||||.|+
T Consensus 90 --~g~~~~~~~~v-~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~------lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 90 --EGAEGEEHLLV-RGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLI------FGSVARDVILKANKPVICI 154 (155)
T ss_dssp --TTCCEEEEEEE-SSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEE------CCHHHHHHHHHCSSCEEEE
T ss_pred --cCCCceEEEEe-cCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEE------eccHHHHHHHhCCCCEEEe
Confidence 23444443333 22489999999999999999999999987776655 5556669999999999886
No 15
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.21 E-value=1.8e-11 Score=115.07 Aligned_cols=132 Identities=12% Similarity=0.028 Sum_probs=91.6
Q ss_pred eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcCc
Q 047130 496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNWG 575 (815)
Q Consensus 496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 575 (815)
|||+|+|++++...+++.+..++ +..+..++++|+++.... + +..... ........++..+.++++.+. .
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~--~-~~~~~~---~~~~~~~~~~~~~~l~~~~~~--~ 73 (137)
T 2z08_A 4 TILLAYDGSEHARRAAEVAKAEA--EAHGARLIVVHAYEPVPD--Y-LGEPFF---EEALRRRLERAEGVLEEARAL--T 73 (137)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHH--HHHTCEEEEEEEECC--------------------CHHHHHHHHHHHHHHHH--H
T ss_pred eEEEEeCCCHHHHHHHHHHHHHH--hhcCCEEEEEEEecCCCc--c-ccccch---HHHHHHHHHHHHHHHHHHHHH--c
Confidence 79999999999999999999998 446789999999873211 1 100000 000111223444556665544 2
Q ss_pred ce-EEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130 576 TA-CVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL 646 (815)
Q Consensus 576 ~v-~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl 646 (815)
++ +++..+..+ +..+.|++.|+++++||||||.|++.+..+.+ ++++.++|++++||||.|+
T Consensus 74 g~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 74 GVPKEDALLLEG---VPAEAILQAARAEKADLIVMGTRGLGALGSLF------LGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp CCCGGGEEEEES---SHHHHHHHHHHHTTCSEEEEESSCTTCCSCSS------SCHHHHHHHHHCSSCEEEE
T ss_pred CCCccEEEEEec---CHHHHHHHHHHHcCCCEEEECCCCCchhhhhh------hccHHHHHHhcCCCCEEEe
Confidence 34 444445444 89999999999999999999999987776655 5566679999999999886
No 16
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.20 E-value=8.4e-11 Score=115.43 Aligned_cols=144 Identities=8% Similarity=0.090 Sum_probs=88.8
Q ss_pred ceeEEeeecCC---------ChHHHHHHHHHhCCCC-CCCceEEEEEeeeccCCCcc----chh-hhhccccccCCcccc
Q 047130 495 LRILACIYRPD---------NIPAIIKFLQASCPKR-GSLVTVYVLHLIDLRGRAAP----LFI-SHKMQKKTVSNRSYS 559 (815)
Q Consensus 495 lrILv~i~~~~---------~~~~~i~la~~~~~~~-~~~~~v~~Lhlvel~~r~~~----~~~-~~~~~~~~~~~~~~~ 559 (815)
-|||+|+|+++ ....+++.+..++... ..+..++++|+++....... ... ..... .......
T Consensus 6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 82 (175)
T 2gm3_A 6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFR---DMRQSNK 82 (175)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHH---HHTTSHH
T ss_pred cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHH---HHHHHHH
Confidence 48999999999 8999999999865222 25789999999864321100 000 00000 0000111
Q ss_pred hHHHHHHHHHHHhcC-cceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhc
Q 047130 560 ENVILSFKLFEEKNW-GTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLER 638 (815)
Q Consensus 560 ~~i~~af~~~~~~~~-~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ 638 (815)
++..+.++++.+... .++.++..+..+ +..+.|++.|+++++||||||.|++.++.+.+ ++++.++|+++
T Consensus 83 ~~~~~~l~~~~~~~~~~g~~~~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~------~Gsva~~vl~~ 153 (175)
T 2gm3_A 83 AKGLHLLEFFVNKCHEIGVGCEAWIKTG---DPKDVICQEVKRVRPDFLVVGSRGLGRFQKVF------VGTVSAFCVKH 153 (175)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEEES---CHHHHHHHHHHHHCCSEEEEEECCCC--------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCceEEEEecC---CHHHHHHHHHHHhCCCEEEEeCCCCChhhhhh------cCchHHHHHhC
Confidence 122233333332211 456777766655 89999999999999999999999988776665 44555699999
Q ss_pred CCCceEEEeccC
Q 047130 639 APCSVGILIDRG 650 (815)
Q Consensus 639 ApCsVgIlvdrg 650 (815)
+||||.|+....
T Consensus 154 a~~pVlvv~~~~ 165 (175)
T 2gm3_A 154 AECPVMTIKRNA 165 (175)
T ss_dssp CSSCEEEEECCG
T ss_pred CCCCEEEEcCCc
Confidence 999999987554
No 17
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.20 E-value=3.4e-11 Score=117.17 Aligned_cols=141 Identities=13% Similarity=0.030 Sum_probs=92.5
Q ss_pred ccceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEE--EeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHH
Q 047130 493 GELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVL--HLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFE 570 (815)
Q Consensus 493 ~elrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~L--hlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 570 (815)
.--|||+|+|+++++..+++.+..++ + .+.+++++ |+++.+....+...... ..........++.++.+.+..
T Consensus 16 ~~~~ILv~vD~s~~s~~al~~A~~lA--~-~~a~l~ll~a~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ 90 (163)
T 1tq8_A 16 AYKTVVVGTDGSDSSMRAVDRAAQIA--G-ADAKLIIASAYLPQHEDARAADILKDE--SYKVTGTAPIYEILHDAKERA 90 (163)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHH--T-TTSEEEEEEECCC----------------------CCTHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCHHHHHHHHHHHHHh--C-CCCEEEEEEeeeccCcccccccccccH--HHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999999999999 4 67899999 88774421011000000 000011122333444333333
Q ss_pred HhcCcceE-EEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEecc
Q 047130 571 EKNWGTAC-VYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDR 649 (815)
Q Consensus 571 ~~~~~~v~-v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdr 649 (815)
+. .+++ ++..+..+ +..+.|++.|+++++||||||.|++.++.+.+. +++.++|++++||||.|+..+
T Consensus 91 ~~--~gv~~v~~~v~~G---~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~l------GSva~~vl~~a~~PVlvV~~~ 159 (163)
T 1tq8_A 91 HN--AGAKNVEERPIVG---APVDALVNLADEEKADLLVVGNVGLSTIAGRLL------GSVPANVSRRAKVDVLIVHTT 159 (163)
T ss_dssp HT--TTCCEEEEEEECS---SHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHT------BBHHHHHHHHTTCEEEEECCC
T ss_pred HH--cCCCeEEEEEecC---CHHHHHHHHHHhcCCCEEEECCCCCCcccceee------ccHHHHHHHhCCCCEEEEeCC
Confidence 32 3565 77776655 899999999999999999999999877655554 445569999999999998543
No 18
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.19 E-value=2.5e-11 Score=116.74 Aligned_cols=137 Identities=12% Similarity=0.089 Sum_probs=92.9
Q ss_pred ccceeEEeee--cCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHH
Q 047130 493 GELRILACIY--RPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFE 570 (815)
Q Consensus 493 ~elrILv~i~--~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 570 (815)
.--|||+|+| +++++..+++.+..++ +..+..++++|+++.+..........+. ........++.++.+.+..
T Consensus 14 ~~~~ILv~vD~~~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ 88 (156)
T 3fg9_A 14 VYRRILLTVDEDDNTSSERAFRYATTLA--HDYDVPLGICSVLESEDINIFDSLTPSK---IQAKRKHVEDVVAEYVQLA 88 (156)
T ss_dssp CCC-EEEECCSCCCHHHHHHHHHHHHHH--HHHTCCEEEEEEECCCCTTCCCSSHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHH--HhcCCEEEEEEEEeCCCccccccCCHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3458999999 9999999999999998 4467899999999865421110000000 0001112223333333322
Q ss_pred HhcCcce-EEEEEEEe-cCCCChhHHHHHH-HHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130 571 EKNWGTA-CVYPFTAI-SPPKLMHEDVCML-ALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL 646 (815)
Q Consensus 571 ~~~~~~v-~v~~~~~v-s~~~~m~~dI~~~-A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl 646 (815)
+. .++ .++..+.. + +..+.|++. |+++++||||||.|++.+.+ .+.|+ +.++|++++||||.++
T Consensus 89 ~~--~g~~~~~~~v~~~g---~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~Gs------~~~~vl~~a~~PVlvV 155 (156)
T 3fg9_A 89 EQ--RGVNQVEPLVYEGG---DVDDVILEQVIPEFKPDLLVTGADTEFPHS-KIAGA------IGPRLARKAPISVIVV 155 (156)
T ss_dssp HH--HTCSSEEEEEEECS---CHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SSCSC------HHHHHHHHCSSEEEEE
T ss_pred HH--cCCCceEEEEEeCC---CHHHHHHHHHHHhcCCCEEEECCCCCCccc-eeecc------hHHHHHHhCCCCEEEe
Confidence 22 345 47777776 5 899999999 99999999999999988775 35444 4459999999999886
No 19
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.13 E-value=1.3e-10 Score=109.63 Aligned_cols=134 Identities=10% Similarity=0.038 Sum_probs=91.9
Q ss_pred eeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeec-cCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcC
Q 047130 496 RILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDL-RGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNW 574 (815)
Q Consensus 496 rILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel-~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 574 (815)
|||+|+|++++...+++.+..++ +..+..++++|+++- +..... +...... .......++..+.++++.+..
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~l~~~~~~~- 76 (141)
T 1jmv_A 4 HILVAVDLSEESPILLKKAVGIA--KRHDAKLSIIHVDVNFSDLYTG-LIDVNMS---SMQDRISTETQKALLDLAESV- 76 (141)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHH--HHHTCEEEEEEEEECCGGGCCC-CEEHHHH---HHTTCCCCHHHHHHHHHHHHS-
T ss_pred eEEEEecCchhhHHHHHHHHHHH--HhcCCEEEEEEEecCchhhhcc-ccccchH---HHHHHHHHHHHHHHHHHHHHc-
Confidence 79999999999999999999998 446789999999842 321111 0000000 001112244555666665542
Q ss_pred cceEE-EEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEecc
Q 047130 575 GTACV-YPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDR 649 (815)
Q Consensus 575 ~~v~v-~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdr 649 (815)
++.+ +..+..+ +..+.|++.|+++++||||||.| +.+.++ ++++.++|++++||||.|+..+
T Consensus 77 -~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~-~~~~~~--------lgs~~~~vl~~~~~pVlvv~~~ 139 (141)
T 1jmv_A 77 -DYPISEKLSGSG---DLGQVLSDAIEQYDVDLLVTGHH-QDFWSK--------LMSSTRQVMNTIKIDMLVVPLR 139 (141)
T ss_dssp -SSCCCCEEEEEE---CHHHHHHHHHHHTTCCEEEEEEC-CCCHHH--------HHHHHHHHHTTCCSEEEEEECC
T ss_pred -CCCceEEEEecC---CHHHHHHHHHHhcCCCEEEEeCC-Cchhhh--------hcchHHHHHhcCCCCEEEeeCC
Confidence 3333 3444444 78999999999999999999999 654321 5688889999999999998644
No 20
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=98.99 E-value=5.7e-10 Score=104.73 Aligned_cols=128 Identities=10% Similarity=0.005 Sum_probs=83.6
Q ss_pred ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEee-ec-cCCCccchhhhhccccccCCcccchHHHHHHHHHHHh
Q 047130 495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLI-DL-RGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEK 572 (815)
Q Consensus 495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlv-el-~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 572 (815)
-|||+|+|+++....+++.+..++ +..+..++++|++ +. +.. +.+................++..+.++++ +.
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 79 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFS--EKLGAELDILAVLEDVYNLE--RANVTFGLPFPPEIKEESKKRIERRLREV-WE 79 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHH--TTTCCEEEEEEECHHHHHHH--HHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHH--HHcCCeEEEEEEeccccccc--ccccccCCCCChHHHHHHHHHHHHHHHHH-HH
Confidence 379999999999999999999998 4568899999998 63 110 00000000000000001112233334444 22
Q ss_pred ---cCcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130 573 ---NWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL 646 (815)
Q Consensus 573 ---~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl 646 (815)
...+ +++..+..+ +..+.|++.|+++++||||||.|++ + +.++|++++||||.++
T Consensus 80 ~~~~~~~-~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~g~---------s------v~~~vl~~a~~PVlvv 137 (138)
T 1q77_A 80 KLTGSTE-IPGVEYRIG---PLSEEVKKFVEGKGYELVVWACYPS---------A------YLCKVIDGLNLASLIV 137 (138)
T ss_dssp HHHSCCC-CCCEEEECS---CHHHHHHHHHTTSCCSEEEECSCCG---------G------GTHHHHHHSSSEEEEC
T ss_pred HhhccCC-cceEEEEcC---CHHHHHHHHHHhcCCCEEEEeCCCC---------c------hHHHHHHhCCCceEee
Confidence 1233 555555444 8999999999999999999999876 2 2349999999999885
No 21
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=98.87 E-value=2.1e-09 Score=114.52 Aligned_cols=138 Identities=12% Similarity=-0.031 Sum_probs=94.8
Q ss_pred ccceeEEeeecCCC-------hHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHH
Q 047130 493 GELRILACIYRPDN-------IPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILS 565 (815)
Q Consensus 493 ~elrILv~i~~~~~-------~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~a 565 (815)
..-|||+|+|++++ +..+++.+..++ +..+.+++++|+++.+..... .+.. .......++..+.
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~--~~~~-----~~~~~~~~~~~~~ 203 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIA--GLAKATLHVISAHPSPMLSSA--DPTF-----QLSETIEARYREA 203 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHH--HHTTCEEEEEEEEC-----------CH-----HHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHH--HHcCCeEEEEEEecCcccccc--Cchh-----HHHHHHHHHHHHH
Confidence 34589999999998 899999999888 446789999999985432110 0000 0001112334455
Q ss_pred HHHHHHhcCcceE-EEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceE
Q 047130 566 FKLFEEKNWGTAC-VYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVG 644 (815)
Q Consensus 566 f~~~~~~~~~~v~-v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVg 644 (815)
++++.++. ++. ++..+..+ +..+.|++.|+++++||||||.|++.++.+.+ ++++.++|++++||||.
T Consensus 204 l~~~~~~~--g~~~~~~~v~~g---~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~------~Gsv~~~vl~~~~~pVL 272 (290)
T 3mt0_A 204 CRTFQAEY--GFSDEQLHIEEG---PADVLIPRTAQKLDAVVTVIGTVARTGLSGAL------IGNTAEVVLDTLESDVL 272 (290)
T ss_dssp HHHHHHHH--TCCTTTEEEEES---CHHHHHHHHHHHHTCSEEEEECCSSCCGGGCC------SCHHHHHHHTTCSSEEE
T ss_pred HHHHHHHc--CCCcceEEEecc---CHHHHHHHHHHhcCCCEEEECCCCCcCCccee------cchHHHHHHhcCCCCEE
Confidence 55565543 231 23334444 89999999999999999999999998887766 55566699999999999
Q ss_pred EEeccC
Q 047130 645 ILIDRG 650 (815)
Q Consensus 645 Ilvdrg 650 (815)
++..++
T Consensus 273 vv~~~~ 278 (290)
T 3mt0_A 273 VLKPDD 278 (290)
T ss_dssp EECCHH
T ss_pred EECCCC
Confidence 986544
No 22
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=98.76 E-value=6.6e-09 Score=111.95 Aligned_cols=144 Identities=10% Similarity=0.026 Sum_probs=96.7
Q ss_pred cceeEEeeecCCC-------hHHHHHHHHHhCCCCCC--CceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHH
Q 047130 494 ELRILACIYRPDN-------IPAIIKFLQASCPKRGS--LVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVIL 564 (815)
Q Consensus 494 elrILv~i~~~~~-------~~~~i~la~~~~~~~~~--~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~ 564 (815)
--|||+|+|+++. ...+++.+..++. .. +..++++|+.+..........+.. ..........++..+
T Consensus 156 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~--~~~~~a~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 231 (319)
T 3olq_A 156 YGTIVVAANLSNEESYHDALNLKLIELTNDLSH--RIQKDPDVHLLSAYPVAPINIAIELPDF--DPNLYNNALRGQHLI 231 (319)
T ss_dssp TCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHH--HHCSSCCEEEEEEECCCSCSCCTTCTTC--CHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCcchhHHHHHHHHHHHHHHHHH--hccCCCeEEEEEeecCcchhhhccCCcc--cHHHHHHHHHHHHHH
Confidence 4589999999995 4778888887773 34 679999999986543211000000 000001112234455
Q ss_pred HHHHHHHhcCcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceE
Q 047130 565 SFKLFEEKNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVG 644 (815)
Q Consensus 565 af~~~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVg 644 (815)
.++++.++... ..++..+..+ +..+.|++.|+++++||||||.|++.++.+.+ +|++.++|++++||||.
T Consensus 232 ~l~~~~~~~~~-~~~~~~v~~g---~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~------~Gsv~~~vl~~~~~pVL 301 (319)
T 3olq_A 232 AMKELRQKFSI-PEEKTHVKEG---LPEQVIPQVCEELNAGIVVLGILGRTGLSAAF------LGNTAEQLIDHIKCDLL 301 (319)
T ss_dssp HHHHHHHHTTC-CGGGEEEEES---CHHHHHHHHHHHTTEEEEEEECCSCCSTHHHH------HHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHhCC-CcccEEEecC---CcHHHHHHHHHHhCCCEEEEeccCccCCcccc------ccHHHHHHHhhCCCCEE
Confidence 66666655321 1223334434 78999999999999999999999998776544 78888899999999999
Q ss_pred EEeccCC
Q 047130 645 ILIDRGR 651 (815)
Q Consensus 645 Ilvdrg~ 651 (815)
++..++.
T Consensus 302 vv~~~~~ 308 (319)
T 3olq_A 302 AIKPDGF 308 (319)
T ss_dssp EECCTTC
T ss_pred EECCCCC
Confidence 9976653
No 23
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=98.73 E-value=1.6e-08 Score=107.67 Aligned_cols=123 Identities=11% Similarity=-0.012 Sum_probs=93.0
Q ss_pred CccceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHH
Q 047130 492 SGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEE 571 (815)
Q Consensus 492 ~~elrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 571 (815)
...-||++|+|+++....+++.+..++ +..+..++++|+.+-.. .++..+.+.++.+
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la--~~~~~~l~ll~v~~~~~---------------------~~~~l~~~~~~l~ 224 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVV--KKTGGELHIIHVSEDGD---------------------KTADLRVMEEVIG 224 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHH--HHHTCEEEEEEECSSSC---------------------CHHHHHHHHHHHH
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHh--hhcCCEEEEEEEccCch---------------------HHHHHHHHHHHHH
Confidence 344689999999999999999999988 44678999999986321 1223333333333
Q ss_pred hcCcceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEec
Q 047130 572 KNWGTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILID 648 (815)
Q Consensus 572 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvd 648 (815)
. .++.++..+.-+ +..+.|++.|+++++||||||.|++.++.+.+ ++++.++|++++||||.++..
T Consensus 225 ~--~~~~~~~~~~~g---~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pvLvv~~ 290 (294)
T 3loq_A 225 A--EGIEVHVHIESG---TPHKAILAKREEINATTIFMGSRGAGSVMTMI------LGSTSESVIRRSPVPVFVCKR 290 (294)
T ss_dssp H--TTCCEEEEEECS---CHHHHHHHHHHHTTCSEEEEECCCCSCHHHHH------HHCHHHHHHHHCSSCEEEECS
T ss_pred H--cCCcEEEEEecC---CHHHHHHHHHHhcCcCEEEEeCCCCCCcccee------eCcHHHHHHhcCCCCEEEECC
Confidence 3 345566655444 89999999999999999999999988776554 566667999999999999853
No 24
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=98.59 E-value=6.1e-08 Score=104.05 Aligned_cols=134 Identities=9% Similarity=-0.006 Sum_probs=90.5
Q ss_pred ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcC
Q 047130 495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNW 574 (815)
Q Consensus 495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 574 (815)
-+||+|+|+++....+++.+..++ +..+..++++|+.+..... +. ... ..........+.+.+.++.+.+. .
T Consensus 172 ~~Ilv~~D~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~-~~--~~~--~~~~~~~~~~~~l~~~~~~~~~~-~ 243 (309)
T 3cis_A 172 APVLVGVDGSSASELATAIAFDEA--SRRNVDLVALHAWSDVDVS-EW--PGI--DWPATQSMAEQVLAERLAGWQER-Y 243 (309)
T ss_dssp CCEEEECCSSHHHHHHHHHHHHHH--HHTTCCEEEEEESCSSCCT-TC--SSC--CHHHHHHHHHHHHHHHHTTHHHH-C
T ss_pred CeEEEEeCCChHHHHHHHHHHHHH--HhcCCEEEEEEEeeccccc-CC--Ccc--cHHHHHHHHHHHHHHHHHHHHhh-C
Confidence 489999999999999999999888 3456899999998743211 00 000 00000000111122233333332 1
Q ss_pred cceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEe
Q 047130 575 GTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILI 647 (815)
Q Consensus 575 ~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlv 647 (815)
.++.++..+..+ +..+.|.+.|+ ++||||||.|++.++.+.+ ++++.++|++++||||.++.
T Consensus 244 ~~~~~~~~~~~g---~~~~~I~~~a~--~adliV~G~~~~~~~~~~l------~Gsv~~~vl~~~~~pVlvv~ 305 (309)
T 3cis_A 244 PNVAITRVVVRD---QPARQLVQRSE--EAQLVVVGSRGRGGYAGML------VGSVGETVAQLARTPVIVAR 305 (309)
T ss_dssp TTSCEEEEEESS---CHHHHHHHHHT--TCSEEEEESSCSSCCTTCS------SCHHHHHHHHHCSSCEEEEC
T ss_pred CCCcEEEEEEcC---CHHHHHHHhhC--CCCEEEECCCCCCCccccc------cCcHHHHHHhcCCCCEEEeC
Confidence 356676666544 89999999997 8999999999998887766 45566699999999999984
No 25
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.54 E-value=2.3e-07 Score=87.45 Aligned_cols=128 Identities=16% Similarity=0.223 Sum_probs=80.8
Q ss_pred CcceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccc------c---chhhhhHHHHHHHhcccCCCCC-
Q 047130 664 SSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMIS------T---NWEKVLDSEVLKEVKPENNFNQ- 733 (815)
Q Consensus 664 ~~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~------~---~~~~~~d~~~l~~~~~~~~~~~- 733 (815)
..++|+++++|.++.+.|+++|.++|+..+++++++++.++...... + +..++..++.++++.......+
T Consensus 4 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 83 (146)
T 3s3t_A 4 RYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSA 83 (146)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred ccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46799999999999999999999999999999999999865221110 0 1111112234444443222111
Q ss_pred -CEEEEEEEecCc---HHHHH-HHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEE
Q 047130 734 -RVKYVVEMVNEG---QETLA-KIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVV 808 (815)
Q Consensus 734 -~v~y~e~~V~~g---~~~~~-~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvv 808 (815)
.+.+ .+..| +++.+ ++++ .++||++||++++ .++.+| -+|-.-+-+... ++.+||||
T Consensus 84 ~~~~~---~~~~g~~~~~I~~~~a~~--~~~dliV~G~~~~------~~~~~~----~~Gs~~~~vl~~---~~~pVlvV 145 (146)
T 3s3t_A 84 PNLKT---EISYGIPKHTIEDYAKQH--PEIDLIVLGATGT------NSPHRV----AVGSTTSYVVDH---APCNVIVI 145 (146)
T ss_dssp CCCEE---EEEEECHHHHHHHHHHHS--TTCCEEEEESCCS------SCTTTC----SSCHHHHHHHHH---CSSEEEEE
T ss_pred cceEE---EEecCChHHHHHHHHHhh--cCCCEEEECCCCC------CCcceE----EEcchHHHHhcc---CCCCEEEe
Confidence 2222 12223 33444 4443 4579999999986 455544 477777777766 56789987
Q ss_pred e
Q 047130 809 Q 809 (815)
Q Consensus 809 q 809 (815)
.
T Consensus 146 ~ 146 (146)
T 3s3t_A 146 R 146 (146)
T ss_dssp C
T ss_pred C
Confidence 3
No 26
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.49 E-value=3.2e-07 Score=86.49 Aligned_cols=129 Identities=19% Similarity=0.176 Sum_probs=78.8
Q ss_pred cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCc-c---------cc---ccchhhhhHHHHHHHhcccCC-
Q 047130 665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTD-E---------MI---STNWEKVLDSEVLKEVKPENN- 730 (815)
Q Consensus 665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~-~---------~~---~~~~~~~~d~~~l~~~~~~~~- 730 (815)
.++|+++++|.++.+.|+++|.++|+..+++++++++.++.. . .. ..+..++..++.++++.....
T Consensus 2 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (147)
T 3hgm_A 2 FNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE 81 (147)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 469999999999999999999999999999999999986422 0 00 011111122234444332211
Q ss_pred -C--CCCEEEEEEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEE
Q 047130 731 -F--NQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLV 807 (815)
Q Consensus 731 -~--~~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLv 807 (815)
+ .+.+.+.-..=+-.+++.+.+++. ++||++||+|++ .++.+| -+|-.-+-+... ++.+|||
T Consensus 82 ~g~~~~~~~~~~~~g~~~~~I~~~a~~~--~~dliV~G~~~~------~~~~~~----~~Gs~~~~vl~~---~~~pVlv 146 (147)
T 3hgm_A 82 LGVPADKVRAFVKGGRPSRTIVRFARKR--ECDLVVIGAQGT------NGDKSL----LLGSVAQRVAGS---AHCPVLV 146 (147)
T ss_dssp TTCCGGGEEEEEEESCHHHHHHHHHHHT--TCSEEEECSSCT------TCCSCC----CCCHHHHHHHHH---CSSCEEE
T ss_pred cCCCccceEEEEecCCHHHHHHHHHHHh--CCCEEEEeCCCC------ccccce----eeccHHHHHHhh---CCCCEEE
Confidence 1 111122111111134455555553 469999999987 455444 467777777666 5668887
Q ss_pred E
Q 047130 808 V 808 (815)
Q Consensus 808 v 808 (815)
|
T Consensus 147 V 147 (147)
T 3hgm_A 147 V 147 (147)
T ss_dssp C
T ss_pred C
Confidence 5
No 27
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.47 E-value=7.6e-07 Score=83.05 Aligned_cols=126 Identities=13% Similarity=0.122 Sum_probs=77.4
Q ss_pred ceEEEEecCCccHHHHHHHHHHHh-hCCCeEEEEEEeeecCccccc---------cchhhhhHHHHHHHhcccCCCCCCE
Q 047130 666 FRVAMIFLGGSDDREALTLAKRMS-QNTSINLTVFRFIVKTDEMIS---------TNWEKVLDSEVLKEVKPENNFNQRV 735 (815)
Q Consensus 666 ~~I~~~f~gg~DdreAL~~a~rma-~~~~v~ltvl~~~~~~~~~~~---------~~~~~~~d~~~l~~~~~~~~~~~~v 735 (815)
++|+++++|.++.+.|+++|.++| +..+++++++|+.++...... ++.+++..++.++++....... .+
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-g~ 80 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTEK-GI 80 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence 589999999999999999999999 999999999999875322100 0111011223444444332111 12
Q ss_pred EEEEEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEE
Q 047130 736 KYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVV 808 (815)
Q Consensus 736 ~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvv 808 (815)
.+. ..+..|. ..+.|.+...++||++||+|++ .++.+| - |-.-+-+... ++.+||||
T Consensus 81 ~~~-~~v~~g~-~~~~I~~~a~~~dliV~G~~~~------~~~~~~---~--Gs~~~~vl~~---~~~pVlvv 137 (138)
T 3idf_A 81 NPF-VVIKEGE-PVEMVLEEAKDYNLLIIGSSEN------SFLNKI---F--ASHQDDFIQK---APIPVLIV 137 (138)
T ss_dssp CCE-EEEEESC-HHHHHHHHHTTCSEEEEECCTT------STTSSC---C--CCTTCHHHHH---CSSCEEEE
T ss_pred CeE-EEEecCC-hHHHHHHHHhcCCEEEEeCCCc------chHHHH---h--CcHHHHHHhc---CCCCEEEe
Confidence 221 2233342 3333333333889999999976 455444 2 6666666655 55688887
No 28
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.40 E-value=7.1e-07 Score=83.29 Aligned_cols=128 Identities=19% Similarity=0.173 Sum_probs=79.4
Q ss_pred cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCcc-cc---cc---chhhhhHHHHHHHhcccCCCCCCEEE
Q 047130 665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDE-MI---ST---NWEKVLDSEVLKEVKPENNFNQRVKY 737 (815)
Q Consensus 665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~-~~---~~---~~~~~~d~~~l~~~~~~~~~~~~v~y 737 (815)
.++|+++++|.++++.|+++|.++|+..+++++++++.++... .. .+ +..++..++.++++..+ .+...+.+
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~ 80 (137)
T 2z08_A 2 FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARAL-TGVPKEDA 80 (137)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHH-HCCCGGGE
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHH-cCCCccEE
Confidence 4699999999999999999999999999999999999864211 00 00 11111222455554432 11101112
Q ss_pred EEEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEE
Q 047130 738 VVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVV 808 (815)
Q Consensus 738 ~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvv 808 (815)
.-..=+-.+++.+++++. ++||++||+|++ .++.++ -+|-..+-+... ++.+||||
T Consensus 81 ~~~~g~~~~~I~~~a~~~--~~dliV~G~~~~------~~~~~~----~~Gs~~~~vl~~---~~~pVlvv 136 (137)
T 2z08_A 81 LLLEGVPAEAILQAARAE--KADLIVMGTRGL------GALGSL----FLGSQSQRVVAE---APCPVLLV 136 (137)
T ss_dssp EEEESSHHHHHHHHHHHT--TCSEEEEESSCT------TCCSCS----SSCHHHHHHHHH---CSSCEEEE
T ss_pred EEEecCHHHHHHHHHHHc--CCCEEEECCCCC------chhhhh----hhccHHHHHHhc---CCCCEEEe
Confidence 111111134456666653 469999999986 455443 377777777766 56799987
No 29
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.40 E-value=2.8e-07 Score=88.47 Aligned_cols=128 Identities=10% Similarity=0.070 Sum_probs=81.3
Q ss_pred CcceEEEEecC-CccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccccchhhhhHHHHHHHhcccCCC-CCCEEEEEEE
Q 047130 664 SSFRVAMIFLG-GSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNF-NQRVKYVVEM 741 (815)
Q Consensus 664 ~~~~I~~~f~g-g~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~-~~~v~y~e~~ 741 (815)
..++|+++++| .+..+.|+++|.++|+..+++++++++.++.... .++. ++..++.++++...... .-.+.. +..
T Consensus 23 m~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~g~~~~~-~~~ 99 (155)
T 3dlo_A 23 IYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT-KDED-IIEAKETLSWAVSIIRKEGAEGEE-HLL 99 (155)
T ss_dssp CCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS-CHHH-HHHHHHHHHHHHHHHHHTTCCEEE-EEE
T ss_pred ccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcc-cHHH-HHHHHHHHHHHHHHHHhcCCCceE-EEE
Confidence 36799999999 9999999999999999999999999998653211 1111 11122333333322111 112222 222
Q ss_pred ecCc---HHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEEe
Q 047130 742 VNEG---QETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQ 809 (815)
Q Consensus 742 V~~g---~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvvq 809 (815)
+..| +++.+++++. ++||++||++++ .++.+| -+|-+-+-+... ++.+||||.
T Consensus 100 v~~G~~~~~I~~~a~~~--~~DLIV~G~~g~------~~~~~~----~lGSv~~~vl~~---a~~PVLvVr 155 (155)
T 3dlo_A 100 VRGKEPPDDIVDFADEV--DAIAIVIGIRKR------SPTGKL----IFGSVARDVILK---ANKPVICIK 155 (155)
T ss_dssp ESSSCHHHHHHHHHHHT--TCSEEEEECCEE------CTTSCE----ECCHHHHHHHHH---CSSCEEEEC
T ss_pred ecCCCHHHHHHHHHHHc--CCCEEEECCCCC------CCCCCE----EeccHHHHHHHh---CCCCEEEeC
Confidence 3333 3455555553 469999999976 455443 478777777776 667899984
No 30
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.38 E-value=5.8e-07 Score=85.15 Aligned_cols=129 Identities=14% Similarity=0.198 Sum_probs=76.5
Q ss_pred cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccc----------ccc---chhhhhHHHHHHHhcccCCC
Q 047130 665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEM----------IST---NWEKVLDSEVLKEVKPENNF 731 (815)
Q Consensus 665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~----------~~~---~~~~~~d~~~l~~~~~~~~~ 731 (815)
.++|+++++|.++.+.|+++|.++|+..+++++++++.++.... ..+ +..++..++.++++..+...
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 85 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGI 85 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 57999999999999999999999999999999999998652210 000 11111122444444433211
Q ss_pred CC-CEEEEEEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEEee
Q 047130 732 NQ-RVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQQ 810 (815)
Q Consensus 732 ~~-~v~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvvqq 810 (815)
.. .....+- +-.+++.+++++. ++||++||++++ .++. | -+|-+-+-+... ++.+||||..
T Consensus 86 ~~~~~~~~~g--~~~~~I~~~a~~~--~~dliV~G~~~~------~~~~-~----~~Gs~~~~vl~~---~~~pVlvv~~ 147 (150)
T 3tnj_A 86 DPAHRWLVWG--EPREEIIRIAEQE--NVDLIVVGSHGR------HGLA-L----LLGSTANSVLHY---AKCDVLAVRL 147 (150)
T ss_dssp CGGGEEEEES--CHHHHHHHHHHHT--TCSEEEEEEC-------------------CCCHHHHHHHH---CSSEEEEEEC
T ss_pred CcceEEEecC--CHHHHHHHHHHHc--CCCEEEEecCCC------CCcC-e----EecchHHHHHHh---CCCCEEEEeC
Confidence 11 1211111 1134455666653 469999999987 4443 3 577777777776 5679999975
Q ss_pred e
Q 047130 811 Q 811 (815)
Q Consensus 811 ~ 811 (815)
.
T Consensus 148 ~ 148 (150)
T 3tnj_A 148 R 148 (150)
T ss_dssp C
T ss_pred C
Confidence 4
No 31
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.37 E-value=1.4e-06 Score=83.63 Aligned_cols=130 Identities=16% Similarity=0.178 Sum_probs=83.4
Q ss_pred cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecC-----c---cc-----c-cc------chh---hhhHHHH
Q 047130 665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKT-----D---EM-----I-ST------NWE---KVLDSEV 721 (815)
Q Consensus 665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~-----~---~~-----~-~~------~~~---~~~d~~~ 721 (815)
.++|+++++|.++.+.|+++|.++|+..+++++++|+.++. . .. . .. +.+ ++..++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK 84 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999998653 1 10 0 10 011 1112244
Q ss_pred HHHhcccCCCCCCEEEEEEEecCc---HHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCC
Q 047130 722 LKEVKPENNFNQRVKYVVEMVNEG---QETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTED 798 (815)
Q Consensus 722 l~~~~~~~~~~~~v~y~e~~V~~g---~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d 798 (815)
++++....... .+.+... +..| +++.+++++. ++||++||+|++ .++.+| =+|-+.+-+...
T Consensus 85 l~~~~~~~~~~-g~~~~~~-v~~G~~~~~I~~~a~~~--~~dlIV~G~~g~------~~~~~~----~~GSv~~~vl~~- 149 (162)
T 1mjh_A 85 MENIKKELEDV-GFKVKDI-IVVGIPHEEIVKIAEDE--GVDIIIMGSHGK------TNLKEI----LLGSVTENVIKK- 149 (162)
T ss_dssp HHHHHHHHHHT-TCEEEEE-EEEECHHHHHHHHHHHT--TCSEEEEESCCS------SCCTTC----SSCHHHHHHHHH-
T ss_pred HHHHHHHHHHc-CCceEEE-EcCCCHHHHHHHHHHHc--CCCEEEEcCCCC------CCccce----EecchHHHHHHh-
Confidence 44444322111 1222112 2223 4455666653 469999999987 455554 478888877776
Q ss_pred CCCcccEEEEeee
Q 047130 799 LPGRYSVLVVQQQ 811 (815)
Q Consensus 799 ~~~~~SvLvvqq~ 811 (815)
++.+||||...
T Consensus 150 --~~~pVlvv~~~ 160 (162)
T 1mjh_A 150 --SNKPVLVVKRK 160 (162)
T ss_dssp --CCSCEEEECCC
T ss_pred --CCCCEEEEeCC
Confidence 56799999754
No 32
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.34 E-value=1.6e-06 Score=81.19 Aligned_cols=126 Identities=17% Similarity=0.182 Sum_probs=76.5
Q ss_pred ceEEEEecCCcc--HHHHHHHHHHHhhCCCeEEEEEEeeecCccc--------c-cc---chhhhhHHHHHHHhcccCCC
Q 047130 666 FRVAMIFLGGSD--DREALTLAKRMSQNTSINLTVFRFIVKTDEM--------I-ST---NWEKVLDSEVLKEVKPENNF 731 (815)
Q Consensus 666 ~~I~~~f~gg~D--dreAL~~a~rma~~~~v~ltvl~~~~~~~~~--------~-~~---~~~~~~d~~~l~~~~~~~~~ 731 (815)
++|+++++|.++ .+.|+++|.++|+..+++++++|+.++.... . .+ +..++.. +.++++..+...
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~ 80 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSE-TQLKEIAKKFSI 80 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHH-HHHHHHHTTSCC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHH-HHHHHHHHHcCC
Confidence 689999999999 9999999999999999999999998652210 0 00 1111111 233343333211
Q ss_pred -CCCEEEEEEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEE
Q 047130 732 -NQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVV 808 (815)
Q Consensus 732 -~~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvv 808 (815)
...+.+.-..=+-.+++.+++++. ++||++||+| + .|+.+| -+|-..+-+... ++.+||||
T Consensus 81 ~~~~v~~~~~~g~~~~~I~~~a~~~--~~dliV~G~~-~------~~~~~~----~~Gs~~~~v~~~---~~~pVlvv 142 (143)
T 3fdx_A 81 PEDRMHFHVAEGSPKDKILALAKSL--PADLVIIASH-R------PDITTY----LLGSNAAAVVRH---AECSVLVV 142 (143)
T ss_dssp CGGGEEEEEEESCHHHHHHHHHHHT--TCSEEEEESS-C------TTCCSC----SSCHHHHHHHHH---CSSEEEEE
T ss_pred CCCceEEEEEecChHHHHHHHHHHh--CCCEEEEeCC-C------CCCeee----eeccHHHHHHHh---CCCCEEEe
Confidence 112222111111133455555553 5699999999 4 344443 477777777766 66789987
No 33
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.32 E-value=1.5e-06 Score=84.09 Aligned_cols=133 Identities=17% Similarity=0.125 Sum_probs=80.0
Q ss_pred CCcceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEE--EeeecCcc-cc----cc---chhhhhHHHHHHHhcccCCCC
Q 047130 663 GSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVF--RFIVKTDE-MI----ST---NWEKVLDSEVLKEVKPENNFN 732 (815)
Q Consensus 663 ~~~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl--~~~~~~~~-~~----~~---~~~~~~d~~~l~~~~~~~~~~ 732 (815)
...++|+++++|.+..+.|+++|.++|+ .+++++++ ++.++... .. .+ +..++..++.++++.......
T Consensus 15 ~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 93 (163)
T 1tq8_A 15 SAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNA 93 (163)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTT
T ss_pred ccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3467999999999999999999999999 99999999 88754221 00 00 101111223444443322111
Q ss_pred CCEE-EEEEEecC--cHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEEe
Q 047130 733 QRVK-YVVEMVNE--GQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQ 809 (815)
Q Consensus 733 ~~v~-y~e~~V~~--g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvvq 809 (815)
.+. +....... .+++.+++++ .++||++||++++ .++.+| -+|-+.+-+... ++.+||||.
T Consensus 94 -gv~~v~~~v~~G~~~~~I~~~a~~--~~~DLIV~G~~g~------~~~~~~----~lGSva~~vl~~---a~~PVlvV~ 157 (163)
T 1tq8_A 94 -GAKNVEERPIVGAPVDALVNLADE--EKADLLVVGNVGL------STIAGR----LLGSVPANVSRR---AKVDVLIVH 157 (163)
T ss_dssp -TCCEEEEEEECSSHHHHHHHHHHH--TTCSEEEEECCCC------CSHHHH----HTBBHHHHHHHH---TTCEEEEEC
T ss_pred -CCCeEEEEEecCCHHHHHHHHHHh--cCCCEEEECCCCC------Ccccce----eeccHHHHHHHh---CCCCEEEEe
Confidence 111 22122221 2345555555 4469999999987 455443 478777777776 567999997
Q ss_pred eec
Q 047130 810 QQQ 812 (815)
Q Consensus 810 q~~ 812 (815)
...
T Consensus 158 ~~~ 160 (163)
T 1tq8_A 158 TTE 160 (163)
T ss_dssp CC-
T ss_pred CCC
Confidence 654
No 34
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.30 E-value=1.8e-06 Score=83.75 Aligned_cols=131 Identities=14% Similarity=0.068 Sum_probs=81.8
Q ss_pred CcceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccc---------------cccch---hhhhHHHHHHHh
Q 047130 664 SSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEM---------------ISTNW---EKVLDSEVLKEV 725 (815)
Q Consensus 664 ~~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~---------------~~~~~---~~~~d~~~l~~~ 725 (815)
..++|+++++|.++.+.|+++|.++|+..+++++++|+..+.... +.++. .++..++.++++
T Consensus 4 m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (170)
T 2dum_A 4 MFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEK 83 (170)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999998652210 00011 111122344444
Q ss_pred cccCC--CCCCEEEEEEEecC---cHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCC
Q 047130 726 KPENN--FNQRVKYVVEMVNE---GQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLP 800 (815)
Q Consensus 726 ~~~~~--~~~~v~y~e~~V~~---g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~ 800 (815)
..... +. .+.+ +..+.. .+++.+++++. ++||+|||+|++ .++.++ -+|-+-+-+...
T Consensus 84 ~~~~~~~g~-~~~~-~~~~~~g~~~~~I~~~a~~~--~~DlIV~G~~g~------~~~~~~----~~Gsv~~~vl~~--- 146 (170)
T 2dum_A 84 AEEVKRAFR-AKNV-RTIIRFGIPWDEIVKVAEEE--NVSLIILPSRGK------LSLSHE----FLGSTVMRVLRK--- 146 (170)
T ss_dssp HHHHHHHTT-CSEE-EEEEEEECHHHHHHHHHHHT--TCSEEEEESCCC------CC--TT----CCCHHHHHHHHH---
T ss_pred HHHHHHcCC-ceee-eeEEecCChHHHHHHHHHHc--CCCEEEECCCCC------Cccccc----eechHHHHHHHh---
Confidence 33211 11 1221 111222 34456666653 469999999987 455444 478777777766
Q ss_pred CcccEEEEeee
Q 047130 801 GRYSVLVVQQQ 811 (815)
Q Consensus 801 ~~~SvLvvqq~ 811 (815)
++.+||||...
T Consensus 147 ~~~PVlvv~~~ 157 (170)
T 2dum_A 147 TKKPVLIIKEV 157 (170)
T ss_dssp CSSCEEEECCC
T ss_pred CCCCEEEEccC
Confidence 56799999754
No 35
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.30 E-value=1.7e-06 Score=82.64 Aligned_cols=129 Identities=17% Similarity=0.162 Sum_probs=80.2
Q ss_pred CCcceEEEEec--CCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccc-------cchhhhhHHHHHHHhcccCC--C
Q 047130 663 GSSFRVAMIFL--GGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMIS-------TNWEKVLDSEVLKEVKPENN--F 731 (815)
Q Consensus 663 ~~~~~I~~~f~--gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~-------~~~~~~~d~~~l~~~~~~~~--~ 731 (815)
...++|+++++ |.++.+.|+++|.++|+..+++++++|+.++...... .+..++..++.++++..... +
T Consensus 13 ~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 92 (156)
T 3fg9_A 13 LVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRG 92 (156)
T ss_dssp CCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34689999999 9999999999999999999999999999865321100 01111122244444433221 1
Q ss_pred CCCEEEEEEEec---CcHHHHHH-HHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEE
Q 047130 732 NQRVKYVVEMVN---EGQETLAK-IQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLV 807 (815)
Q Consensus 732 ~~~v~y~e~~V~---~g~~~~~~-i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLv 807 (815)
.+.+.+ .... -.+++.++ +++. ++||++||+|++ .++. + -+|-.-+-+... ++.+|||
T Consensus 93 ~~~~~~--~v~~~g~~~~~I~~~~a~~~--~~DlIV~G~~g~------~~~~-~----~~Gs~~~~vl~~---a~~PVlv 154 (156)
T 3fg9_A 93 VNQVEP--LVYEGGDVDDVILEQVIPEF--KPDLLVTGADTE------FPHS-K----IAGAIGPRLARK---APISVIV 154 (156)
T ss_dssp CSSEEE--EEEECSCHHHHHHHTHHHHH--CCSEEEEETTCC------CTTS-S----SCSCHHHHHHHH---CSSEEEE
T ss_pred CCceEE--EEEeCCCHHHHHHHHHHHhc--CCCEEEECCCCC------Cccc-e----eecchHHHHHHh---CCCCEEE
Confidence 112222 2222 12334454 4443 459999999987 4552 2 378888877776 6679999
Q ss_pred Ee
Q 047130 808 VQ 809 (815)
Q Consensus 808 vq 809 (815)
|.
T Consensus 155 V~ 156 (156)
T 3fg9_A 155 VR 156 (156)
T ss_dssp EC
T ss_pred eC
Confidence 73
No 36
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=98.23 E-value=1.4e-06 Score=91.21 Aligned_cols=113 Identities=10% Similarity=-0.041 Sum_probs=79.8
Q ss_pred ceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHHhcC
Q 047130 495 LRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEEKNW 574 (815)
Q Consensus 495 lrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 574 (815)
-|||+|+|+++....+++.+..++. ..+..++++|+.+..+ + .++..+.+.++.+.
T Consensus 155 ~~ilv~~d~s~~~~~al~~a~~la~--~~~a~l~ll~v~~~~~---------~-----------~~~~l~~~~~~l~~-- 210 (268)
T 3ab8_A 155 EGALLGYDASESAVRALHALAPLAR--ALGLGVRVVSVHEDPA---------R-----------AEAWALEAEAYLRD-- 210 (268)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHH--HHTCCEEEEEECSSHH---------H-----------HHHHHHHHHHHHHH--
T ss_pred CEEEEEECCCHHHHHHHHHHHHhhh--cCCCEEEEEEEcCcHH---------H-----------HHHHHHHHHHHHHH--
Confidence 4899999999999999999888873 3456799999975210 0 01222223333222
Q ss_pred cceEEEEEEEecCCCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130 575 GTACVYPFTAISPPKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL 646 (815)
Q Consensus 575 ~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl 646 (815)
.+++++..+.- .+..+.|.+.|+++ ||||||. ++.+.+. +++.++|++++||||.++
T Consensus 211 ~~~~~~~~~~~---g~~~~~i~~~a~~~--dliV~G~----~~~~~~~------Gs~~~~vl~~~~~pvlvv 267 (268)
T 3ab8_A 211 HGVEASALVLG---GDAADHLLRLQGPG--DLLALGA----PVRRLVF------GSTAERVIRNAQGPVLTA 267 (268)
T ss_dssp TTCCEEEEEEC---SCHHHHHHHHCCTT--EEEEEEC----CCSCCSS------CCHHHHHHHHCSSCEEEE
T ss_pred cCCceEEEEeC---CChHHHHHHHHHhC--CEEEECC----cccccEe------ccHHHHHHhcCCCCEEEe
Confidence 34566665543 48999999999988 9999998 4445554 444559999999999886
No 37
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.20 E-value=4.2e-06 Score=78.21 Aligned_cols=125 Identities=13% Similarity=0.057 Sum_probs=78.3
Q ss_pred cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeec-Cc-ccc---------ccchhhhhHHHHHHHhcccCCCCC
Q 047130 665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVK-TD-EMI---------STNWEKVLDSEVLKEVKPENNFNQ 733 (815)
Q Consensus 665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~-~~-~~~---------~~~~~~~~d~~~l~~~~~~~~~~~ 733 (815)
.++|+++++|.++++.|+++|.++|+..+++++++++.++ .. ... .++.+++ .++.++++..+. +.+
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~-~~~ 79 (141)
T 1jmv_A 2 YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTE-TQKALLDLAESV-DYP 79 (141)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCH-HHHHHHHHHHHS-SSC
T ss_pred CceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHH-HHHHHHHHHHHc-CCC
Confidence 4699999999999999999999999999999999999832 11 100 0011111 124444444332 111
Q ss_pred --CEEEEEEEecCcHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhhhcCCCCCcccEEEEeee
Q 047130 734 --RVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCLVTEDLPGRYSVLVVQQQ 811 (815)
Q Consensus 734 --~v~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~las~d~~~~~SvLvvqq~ 811 (815)
.....+-.. .+++.+++++.+ +||++||++ + .++. .+|-..+-+... ++.+||||...
T Consensus 80 ~~~~~~~~g~~--~~~I~~~a~~~~--~dliV~G~~-~------~~~~------~lgs~~~~vl~~---~~~pVlvv~~~ 139 (141)
T 1jmv_A 80 ISEKLSGSGDL--GQVLSDAIEQYD--VDLLVTGHH-Q------DFWS------KLMSSTRQVMNT---IKIDMLVVPLR 139 (141)
T ss_dssp CCCEEEEEECH--HHHHHHHHHHTT--CCEEEEEEC-C------CCHH------HHHHHHHHHHTT---CCSEEEEEECC
T ss_pred ceEEEEecCCH--HHHHHHHHHhcC--CCEEEEeCC-C------chhh------hhcchHHHHHhc---CCCCEEEeeCC
Confidence 111111111 344666666644 599999998 6 3432 256666666665 56799999754
No 38
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=98.00 E-value=2.8e-05 Score=75.64 Aligned_cols=132 Identities=11% Similarity=0.147 Sum_probs=75.1
Q ss_pred CcceEEEEecCCc---------cHHHHHHHHHHHh-hC--CCeEEEEEEeeecCc--cc-------cccch------hhh
Q 047130 664 SSFRVAMIFLGGS---------DDREALTLAKRMS-QN--TSINLTVFRFIVKTD--EM-------ISTNW------EKV 716 (815)
Q Consensus 664 ~~~~I~~~f~gg~---------DdreAL~~a~rma-~~--~~v~ltvl~~~~~~~--~~-------~~~~~------~~~ 716 (815)
..++|+++++|.+ ..+.|+++|.+++ +. .+++++++|+..+.. .. ..++. .++
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKA 83 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHH
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHH
Confidence 3579999999999 8899999999986 54 699999999974321 10 00000 011
Q ss_pred hHHHHHHHhcccCCCCCCEEEEEEEecC--cHHHHHHHHhhCCCccEEEEcccCCCCCccccCCCcCCCCCccccchhhh
Q 047130 717 LDSEVLKEVKPENNFNQRVKYVVEMVNE--GQETLAKIQSVVPKYDLVIVGRRDNTETPQTSGLDRCREFPELGIVGNCL 794 (815)
Q Consensus 717 ~d~~~l~~~~~~~~~~~~v~y~e~~V~~--g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gL~~w~e~~eLG~iGd~l 794 (815)
..++.++++...... ..+.+.-..... .+++.+++++.+ +||+|||+|++ .++.+| -+|-+-+-+
T Consensus 84 ~~~~~l~~~~~~~~~-~g~~~~~~v~~G~~~~~I~~~a~~~~--~DLIVmG~~g~------~~~~~~----~~Gsva~~v 150 (175)
T 2gm3_A 84 KGLHLLEFFVNKCHE-IGVGCEAWIKTGDPKDVICQEVKRVR--PDFLVVGSRGL------GRFQKV----FVGTVSAFC 150 (175)
T ss_dssp HHHHHHHHHHHHHHH-HTCEEEEEEEESCHHHHHHHHHHHHC--CSEEEEEECCC------C------------CHHHHH
T ss_pred HHHHHHHHHHHHHHH-CCCceEEEEecCCHHHHHHHHHHHhC--CCEEEEeCCCC------Chhhhh----hcCchHHHH
Confidence 122445554432211 112222122221 244555566544 59999999987 455544 478777777
Q ss_pred hcCCCCCcccEEEEeee
Q 047130 795 VTEDLPGRYSVLVVQQQ 811 (815)
Q Consensus 795 as~d~~~~~SvLvvqq~ 811 (815)
... ++.+||||...
T Consensus 151 l~~---a~~pVlvv~~~ 164 (175)
T 2gm3_A 151 VKH---AECPVMTIKRN 164 (175)
T ss_dssp HHH---CSSCEEEEECC
T ss_pred HhC---CCCCEEEEcCC
Confidence 776 56799999754
No 39
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=97.83 E-value=2.5e-05 Score=72.62 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=37.1
Q ss_pred cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEee-e
Q 047130 665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFI-V 703 (815)
Q Consensus 665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~-~ 703 (815)
.++|+++++|.++.+.|+++|.++|+..+++++++++. +
T Consensus 4 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~ 43 (138)
T 1q77_A 4 MKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLED 43 (138)
T ss_dssp CEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHH
T ss_pred ccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 57999999999999999999999999999999999998 5
No 40
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.45 E-value=0.071 Score=57.24 Aligned_cols=69 Identities=7% Similarity=-0.031 Sum_probs=41.0
Q ss_pred HHHHHHHHhhhhcCCChHHHHHHHHHHhhh-hhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 047130 398 AKVATTMIPPLYCKVPKRDAFALALIMSTK-GIVEISTYNISRNIESLTDQMFSFLTVEILVTAIIIPILVKF 469 (815)
Q Consensus 398 ~K~i~~~l~~~~~~~~~~~~~~lgl~m~~k-G~v~li~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~lv~~ 469 (815)
.-+..++..++.+|.+.+|+..+++..+.| ....+.++...+.. ++..--..++..+...++++.+..+
T Consensus 240 ~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F~~---~p~~alp~~iy~~~q~i~~~~la~~ 309 (332)
T 3zux_A 240 IGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAA---APVVAVPGALFSVWHNISGSLLATY 309 (332)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHSTT---CGGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHHHcCC---CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888999999999998855544 55666666554421 1222233344555555555555544
No 41
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=90.15 E-value=4.4 Score=41.84 Aligned_cols=223 Identities=16% Similarity=0.101 Sum_probs=127.4
Q ss_pred CccceeEEeeecCCChHHHHHHHHHhCCCCCCCceEEEEEeeeccCCCccchhhhhccccccCCcccchHHHHHHHHHHH
Q 047130 492 SGELRILACIYRPDNIPAIIKFLQASCPKRGSLVTVYVLHLIDLRGRAAPLFISHKMQKKTVSNRSYSENVILSFKLFEE 571 (815)
Q Consensus 492 ~~elrILv~i~~~~~~~~~i~la~~~~~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 571 (815)
+-.-+|||++..|..-.+++.++..+... ...+.+.++.. ....+.+ .++ .+++++|-+
T Consensus 18 nWrP~iLV~sg~p~~~~~li~la~~lt~~---~G~ltv~~i~p--~~~~~~l---------------~~q-l~~l~~~l~ 76 (294)
T 3g40_A 18 TWKANLLVPVEDPRELMGTFDFLRDITYP---KGSVKLLGLAG--NTDKENL---------------LSQ-LPSISEGFQ 76 (294)
T ss_dssp -CCCEEEEEESCHHHHHHHHHHHHHHHTT---TCEEEEEECC-----CTTCH---------------HHH-HHHHHHHHH
T ss_pred CCCCcEEEecCCchhhhhHHHHHHHhccC---ceeEEEEEEcc--CCCccHH---------------HHH-HHHHHHHHH
Confidence 56678999999999999999999999854 35677777742 2111100 122 255566655
Q ss_pred hcCcceEEEEEEEecCCCChhHHHHHHHHhc-----CCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEE
Q 047130 572 KNWGTACVYPFTAISPPKLMHEDVCMLALDK-----LASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGIL 646 (815)
Q Consensus 572 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~-----~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIl 646 (815)
+ .++.. ++++-.-.+.++++..+.+.. +.+.|++|+..+.. ...+++.+.++. .++--.|.++
T Consensus 77 ~--r~v~a--~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e-------~~~~y~~~i~~~-~~~~~nVlil 144 (294)
T 3g40_A 77 E--EGVFS--SWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRD-------RDEEIREIIRKA-SMYRMGVLLF 144 (294)
T ss_dssp H--TTCEE--EEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGG-------GHHHHHHHHHHH-HHTTCEEEEE
T ss_pred h--CCcee--EEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChh-------hhHHHHHHHHHH-HHhCceEEEE
Confidence 4 34433 333333357889999888776 56899999854422 223577777665 4446777777
Q ss_pred eccCCcccccccccccCCcceEEEEec--------CC--ccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccccchhhh
Q 047130 647 IDRGRIGRFISSELSLGSSFRVAMIFL--------GG--SDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKV 716 (815)
Q Consensus 647 vdrg~~~~~~~~~~~~~~~~~I~~~f~--------gg--~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~ 716 (815)
-+... .+ ....++|=+=.- || .+-.-++-+|-.+.++.++++.+..+++. +...++.++.
T Consensus 145 ~~~~~--~~------fg~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d--e~a~~~a~~~ 214 (294)
T 3g40_A 145 SKHPQ--AG------LGRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT--AIQAQAAENF 214 (294)
T ss_dssp ECCTT--TT------TTTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS--HHHHHHHHHH
T ss_pred ecCCc--cC------CCCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC--HHHHHHHHHH
Confidence 54322 11 111344444311 22 24456888888888888999999999854 1111233334
Q ss_pred hHHHHHHHhcccCCCCCCEEEEEEEecCcHHHHHHHHhhCCCccEEEEcccCC
Q 047130 717 LDSEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRDN 769 (815)
Q Consensus 717 ~d~~~l~~~~~~~~~~~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~~ 769 (815)
++ ++++..|... ..+ . |. + +..+++++- .+=||+++|-...
T Consensus 215 l~-~Lv~~~Ri~a-----~~~--v-v~-~-~F~~il~~s-~~ADL~flGl~~~ 255 (294)
T 3g40_A 215 LQ-SLAELARIPN-----VKM--Q-VL-R-ENPIKSSKL-PFASLHIFSLDPN 255 (294)
T ss_dssp HH-HHHHHHTCCS-----CEE--E-EE-S-SCTTTSSSC-CCCSEEEEECCSS
T ss_pred HH-HHHHHhcCCc-----eEE--E-ec-C-chHHHHhhC-cCCCEEEEcCCCC
Confidence 44 4555555321 222 1 21 1 234455553 5569999998654
No 42
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=63.18 E-value=8.1 Score=40.91 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=32.4
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeec
Q 047130 666 FRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVK 704 (815)
Q Consensus 666 ~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~ 704 (815)
.++++.|.||+|+--.|.++.+.....+..+.++++.+.
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg 85 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTR 85 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCS
T ss_pred CCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECC
Confidence 379999999999999999998887655566788888765
No 43
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=56.10 E-value=1.1e+02 Score=32.01 Aligned_cols=93 Identities=13% Similarity=0.095 Sum_probs=51.2
Q ss_pred HHHHhhcCCCCCchhHHHHhhhhhHHHhhHHHHHHhhcccCChhhhcccc-hhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 047130 332 FVFGLAVPAGPPLGSALVEKLDPMVSGLFIPLVVTSASMRTNLSDIKLLD-DNLAKSTAVIVAVVVLAKVATTMIPPLYC 410 (815)
Q Consensus 332 fvaGl~~~~~~~~~~~l~~kl~~~~~~l~lPlFF~~~G~~~dl~~l~~~~-~~~~~~~~~i~~~~~~~K~i~~~l~~~~~ 410 (815)
.++|...|.... . ++... ...+++-+...|++++..++.... .+. ......+.-++...+.++..++.+
T Consensus 28 ~~lg~~~P~~~~---~----~~~~i-~~~l~~~mf~~G~~l~~~~l~~~~~~~~--~~~~~l~~~~vi~Pll~~~l~~~~ 97 (332)
T 3zux_A 28 AAAAFFAPDTFK---W----AGPYI-PWLLGIIMFGMGLTLKPSDFDILFKHPK--VVIIGVIAQFAIMPATAWCLSKLL 97 (332)
T ss_dssp HHHHHHCGGGTG---G----GGGGH-HHHHHHHHHHHHHHCCGGGGHHHHHSHH--HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcchhhh---h----hHHHH-HHHHHHHHHHHHhCCCHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777776421 1 23332 456667777889999988876432 121 233334445566777777777777
Q ss_pred CCChHHHHHHHHH-HhhhhhHHHHH
Q 047130 411 KVPKRDAFALALI-MSTKGIVEIST 434 (815)
Q Consensus 411 ~~~~~~~~~lgl~-m~~kG~v~li~ 434 (815)
+.+......+-+. ..|-|..+.++
T Consensus 98 ~l~~~~~~Glil~~~~P~~~~s~v~ 122 (332)
T 3zux_A 98 NLPAEIAVGVILVGCCPGGTASNVM 122 (332)
T ss_dssp TCCHHHHHHHHHHHHSCCCTHHHHH
T ss_pred CCChHHHHHHHHHhcCCchhHHHHH
Confidence 7765443332222 23444444443
No 44
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=55.49 E-value=33 Score=37.76 Aligned_cols=96 Identities=10% Similarity=0.067 Sum_probs=58.4
Q ss_pred cceEEEEecCCccHHHHHHHHHHHhhC-CCeEEEEEEeeecCccccccchhhhhHHHHHHHhcccCCCCCCEEEEEEEe-
Q 047130 665 SFRVAMIFLGGSDDREALTLAKRMSQN-TSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMV- 742 (815)
Q Consensus 665 ~~~I~~~f~gg~DdreAL~~a~rma~~-~~v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~V- 742 (815)
..+|++.+.||+|.--.+.++.++.+. .+.++++++++..-. . +...|.++++++..+.. .+ ....+..+
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr-~-----~s~~~~~~v~~~~~~lg-i~-~~v~~~~~~ 84 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLS-A-----NADAWVTHCENVCQQWQ-VP-LVVERVQLA 84 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCC-S-----SHHHHHHHHHHHHHHTT-CC-EEEECCCCC
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCC-c-----ccHHHHHHHHHHHHHcC-Cc-EEEEEecCC
Confidence 358999999999999999999888877 889999999975411 1 11223456666655432 11 11111111
Q ss_pred cCc---HHH-----HHHHHhhCCCccEEEEcccC
Q 047130 743 NEG---QET-----LAKIQSVVPKYDLVIVGRRD 768 (815)
Q Consensus 743 ~~g---~~~-----~~~i~~~~~~~DLiivG~~~ 768 (815)
+.| ++. ..++.+...++|.++.|.|.
T Consensus 85 ~~~~~~e~~aR~~Ry~~l~~~a~~~~~i~tgH~~ 118 (433)
T 1ni5_A 85 QEGLGIEAQARQARYQAFARTLLPGEVLVTAQHL 118 (433)
T ss_dssp CSSSTTTTHHHHHHHHHHHHTCCTTEEEECCCCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhCCeEEeeccc
Confidence 112 111 12344555568999998874
No 45
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=51.64 E-value=48 Score=32.27 Aligned_cols=35 Identities=11% Similarity=0.020 Sum_probs=28.1
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeec
Q 047130 666 FRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVK 704 (815)
Q Consensus 666 ~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~ 704 (815)
.+|++.|.||+|+--.|.++.+.. + ++.++++++.
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~--~--~v~~v~vd~g 79 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR--P--DIPVILTDTG 79 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS--T--TCEEEEEECS
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC--C--CCeEEEeeCC
Confidence 489999999999998888888874 2 4677887764
No 46
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=46.39 E-value=3.4 Score=27.97 Aligned_cols=28 Identities=7% Similarity=0.038 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhhh
Q 047130 198 KMKLWVVTVVHSLSRFPSIACLVSDLRI 225 (815)
Q Consensus 198 ~~~~l~ig~~ls~Ts~~vv~~iL~el~l 225 (815)
+..++++|+++|+|++..+..++++++.
T Consensus 3 ~~~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 3 KKDNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCCChHHHHHHHHHcCC
Confidence 3456788999999999999999999885
No 47
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=44.69 E-value=15 Score=38.35 Aligned_cols=92 Identities=13% Similarity=0.114 Sum_probs=52.8
Q ss_pred ceEEEEecCCccHHHHHHHHHHHh-h-----------------CCCeEEEEEEeeecCccccccchhhhhHHHHHHHhcc
Q 047130 666 FRVAMIFLGGSDDREALTLAKRMS-Q-----------------NTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKP 727 (815)
Q Consensus 666 ~~I~~~f~gg~DdreAL~~a~rma-~-----------------~~~v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 727 (815)
.++++.|.||+|+-=.|.++.+-. + .|...+.|+++.+...|.++ . +|+++...
T Consensus 59 ~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~FpET-------~-ef~d~~~~ 130 (308)
T 3fwk_A 59 GEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTL-------E-NFIEETSL 130 (308)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCHHH-------H-HHHHHHHH
T ss_pred CCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCHHH-------H-HHHHHHHH
Confidence 479999999999999898887742 1 12357888998877666432 2 45555544
Q ss_pred cCCCCCCEEEEEEEecC---cHHHHHHHHhhCCCccEEEEcccCC
Q 047130 728 ENNFNQRVKYVVEMVNE---GQETLAKIQSVVPKYDLVIVGRRDN 769 (815)
Q Consensus 728 ~~~~~~~v~y~e~~V~~---g~~~~~~i~~~~~~~DLiivG~~~~ 769 (815)
++. -+-+.| ..+. -.+-...+++....+|.++.|.|..
T Consensus 131 ~yg-L~L~v~---~p~~~~~~~~~cc~~~K~~P~~~AwitG~RR~ 171 (308)
T 3fwk_A 131 RYS-LSLYES---DRDKCETMAEAFETFLQVFPETKAIVIGIRHT 171 (308)
T ss_dssp HTT-EEEEEC---CTTSCCCHHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred HhC-CcEEEe---CCCCCHHHHHHHHHHHHhCCCCCEEEEEeecC
Confidence 431 111111 1111 1123334555566799999999976
No 48
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=44.36 E-value=18 Score=36.70 Aligned_cols=95 Identities=18% Similarity=0.119 Sum_probs=52.5
Q ss_pred ecCCccHHHHHHHHHHHhhCCCe--EEEEEEeeecCccccccchhhhhHHHHHHHhcccCCCCCCEEEEE-EE-e---cC
Q 047130 672 FLGGSDDREALTLAKRMSQNTSI--NLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVV-EM-V---NE 744 (815)
Q Consensus 672 f~gg~DdreAL~~a~rma~~~~v--~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e-~~-V---~~ 744 (815)
+.-.|.|.+|++.|.|+.+. +. +++++-+-++. .++.+. +.+. . +.+++...+ .. . -+
T Consensus 33 ~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~-------a~~~lr-~ala----~--GaD~vi~v~~d~~~~~~~~ 97 (252)
T 1efp_B 33 MSMNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQ-------AAETLR-TALA----M--GADRAILVVAADDVQQDIE 97 (252)
T ss_dssp EEECHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGG-------GHHHHH-HHHH----H--TCSEEEEEECCSSTTCCCC
T ss_pred ccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh-------HHHHHH-HHHh----c--CCCEEEEEecChhhcccCC
Confidence 33458999999999999987 65 88888765321 122222 1121 1 334454433 11 1 12
Q ss_pred cHHHHHHHHhh--CCCccEEEEcccCCC-----CCccccCCCcC
Q 047130 745 GQETLAKIQSV--VPKYDLVIVGRRDNT-----ETPQTSGLDRC 781 (815)
Q Consensus 745 g~~~~~~i~~~--~~~~DLiivG~~~~~-----~~~~~~gL~~w 781 (815)
...+...+.+. ..+||+|+.|++... -.|++..+.+|
T Consensus 98 ~~~~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 141 (252)
T 1efp_B 98 PLAVAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGW 141 (252)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 22333333332 135899999998732 23555555555
No 49
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=41.56 E-value=17 Score=37.20 Aligned_cols=98 Identities=13% Similarity=0.089 Sum_probs=53.4
Q ss_pred EEecCCccHHHHHHHHHHHhhCCCe--EEEEEEeeecCccccccchhhhhHHHHHHHhcccCCCCCCEEEEEEEe---cC
Q 047130 670 MIFLGGSDDREALTLAKRMSQNTSI--NLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMV---NE 744 (815)
Q Consensus 670 ~~f~gg~DdreAL~~a~rma~~~~v--~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~V---~~ 744 (815)
+.+.-.|.|.+|++.|.|+++..+. +++++-+-++. .+ +.+++... . +.+++...+.-- -+
T Consensus 31 ~~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~~~-------~~-----~~lr~ala-~-GaD~vi~v~d~~~~~~~ 96 (264)
T 1o97_C 31 MMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDR-------VD-----ESLRKCLA-K-GADRAVRVWDDAAEGSD 96 (264)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCGG-------GH-----HHHHHHHH-T-TCSEEEEECCGGGTTCC
T ss_pred CCCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCchh-------HH-----HHHHHHHh-c-CCCEEEEEcCcccccCC
Confidence 3444569999999999999986665 88888764321 11 22222211 1 334454433111 12
Q ss_pred cHHHHHHHHhh--CCCccEEEEcccCCC-----CCccccCCCcC
Q 047130 745 GQETLAKIQSV--VPKYDLVIVGRRDNT-----ETPQTSGLDRC 781 (815)
Q Consensus 745 g~~~~~~i~~~--~~~~DLiivG~~~~~-----~~~~~~gL~~w 781 (815)
...+...+.+. ..+||+|+.|++... -.|++..+.+|
T Consensus 97 ~~~~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 140 (264)
T 1o97_C 97 AIVVGRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNW 140 (264)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 22233333332 125899999998742 13555555555
No 50
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=41.50 E-value=19 Score=36.67 Aligned_cols=96 Identities=13% Similarity=0.036 Sum_probs=52.7
Q ss_pred EecCCccHHHHHHHHHHHhhCCCe--EEEEEEeeecCccccccchhhhhHHHHHHHhcccCCCCCCEEEEE-EE-e---c
Q 047130 671 IFLGGSDDREALTLAKRMSQNTSI--NLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVV-EM-V---N 743 (815)
Q Consensus 671 ~f~gg~DdreAL~~a~rma~~~~v--~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e-~~-V---~ 743 (815)
.+.-.|.|.+|++.|.|+.+. +. +++++-+-++. .++. +++... . +.+++...+ .. . -
T Consensus 35 ~~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~-------a~~~-----lr~ala-~-GaD~vi~v~~d~~~~~~~ 99 (255)
T 1efv_B 35 KHSMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQ-------CQET-----IRTALA-M-GADRGIHVEVPPAEAERL 99 (255)
T ss_dssp CEEECHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTT-------HHHH-----HHHHHH-H-TCSEEEEEECCHHHHTTC
T ss_pred CccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh-------HHHH-----HHHHHh-c-CCCEEEEEecChhhcccC
Confidence 334458999999999999987 65 88888765331 1222 222211 1 334454433 11 1 1
Q ss_pred CcHHHHHHHHhh--CCCccEEEEcccCCC-----CCccccCCCcC
Q 047130 744 EGQETLAKIQSV--VPKYDLVIVGRRDNT-----ETPQTSGLDRC 781 (815)
Q Consensus 744 ~g~~~~~~i~~~--~~~~DLiivG~~~~~-----~~~~~~gL~~w 781 (815)
+...+...+.+. ..+||+|+.|++... -.|++..+.+|
T Consensus 100 ~~~~~A~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~ 144 (255)
T 1efv_B 100 GPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDW 144 (255)
T ss_dssp CHHHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCC
Confidence 222233333332 135899999998742 13555555555
No 51
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=39.88 E-value=29 Score=38.49 Aligned_cols=60 Identities=15% Similarity=0.078 Sum_probs=44.4
Q ss_pred cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccccchhhhhHHHHHHHhcccC
Q 047130 665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPEN 729 (815)
Q Consensus 665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 729 (815)
..+|++++.||+|.--.|.++.++.+..+.++++++++..-. ..+...|.++++++..+.
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglr-----g~~s~~~~~~v~~~~~~l 77 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFR-----GRESEEEMEFVKRFCVER 77 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTC-----THHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCC-----ccccHHHHHHHHHHHHHc
Confidence 358999999999999999999999888889999999975411 012233456677666553
No 52
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=39.84 E-value=34 Score=35.74 Aligned_cols=96 Identities=10% Similarity=0.060 Sum_probs=52.5
Q ss_pred ceEEEEecCCccHHHHHHHHHHHh-h-----------------CCCeEEEEEEeeecCccccccchhhhhHHHHHHHhcc
Q 047130 666 FRVAMIFLGGSDDREALTLAKRMS-Q-----------------NTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKP 727 (815)
Q Consensus 666 ~~I~~~f~gg~DdreAL~~a~rma-~-----------------~~~v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 727 (815)
.++++.|.||+|+--.|.++.+.. + .++.++.++++.+...+. -..+|++++..
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~fp--------et~~fv~~~~~ 125 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETFP--------TLENFVLETSE 125 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCCH--------HHHHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCCH--------HHHHHHHHHHH
Confidence 479999999999998888887753 1 135668888887653332 12255655554
Q ss_pred cCCCCCCEEE-EEEEecCc-HHHHHHHHhhCCCccEEEEcccCCC
Q 047130 728 ENNFNQRVKY-VVEMVNEG-QETLAKIQSVVPKYDLVIVGRRDNT 770 (815)
Q Consensus 728 ~~~~~~~v~y-~e~~V~~g-~~~~~~i~~~~~~~DLiivG~~~~~ 770 (815)
++. -+.+.+ .+.....+ .+......+.....+.+++|.+...
T Consensus 126 ~yg-l~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 126 RYC-LSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp HTT-EEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred HcC-CCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 431 111111 11100111 1112222233445789999998763
No 53
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=39.28 E-value=31 Score=36.09 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=34.3
Q ss_pred cceEEEEecCCccHHHHHHHHHHHhhCCCeE-EEEEEeeec
Q 047130 665 SFRVAMIFLGGSDDREALTLAKRMSQNTSIN-LTVFRFIVK 704 (815)
Q Consensus 665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~-ltvl~~~~~ 704 (815)
..+|++.+.||+|.--.+.++.+..+..+.+ +++++++..
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g 64 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHM 64 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECC
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECC
Confidence 3589999999999999998888887777778 999998754
No 54
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=32.14 E-value=1.1e+02 Score=25.93 Aligned_cols=56 Identities=14% Similarity=0.013 Sum_probs=40.6
Q ss_pred ChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEecc
Q 047130 590 LMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDR 649 (815)
Q Consensus 590 ~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdr 649 (815)
...+.|.++++|++++.||+|.-.+ .||+........+...+++-++ +.||- ++|.
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~--mdGt~~~~~~~~~~f~~~L~~~-~lpV~-~~DE 93 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLR--TDLKESAQAGKVLPLVEALRAR-GVEVE-LWDE 93 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCC--CCSSSCCCSSTTHHHHHHHHHT-TCEEE-EECC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccC--CCCCcCHHHHHHHHHHHHHhcC-CCCEE-EECC
Confidence 4567899999999999999998654 3454434444577888887777 89984 4554
No 55
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=31.72 E-value=25 Score=24.89 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=19.9
Q ss_pred ceEEEEEEEecCCCChhHHHHHHHHhcCCC
Q 047130 576 TACVYPFTAISPPKLMHEDVCMLALDKLAS 605 (815)
Q Consensus 576 ~v~v~~~~~vs~~~~m~~dI~~~A~e~~~d 605 (815)
.|+.+ .-++| +|-++|..+|.|++.|
T Consensus 11 kvslh--llvdp--dmkdeiikyaqekdfd 36 (54)
T 3gxq_A 11 KVSLH--LLVDP--DMKDEIIKYAQEKDFD 36 (54)
T ss_dssp CEEEE--EEECH--HHHHHHHHHHHHHSTT
T ss_pred eeEEE--EeeCC--chhHHHHHHHHHccch
Confidence 34544 45576 8999999999999765
No 56
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=31.49 E-value=33 Score=34.84 Aligned_cols=39 Identities=5% Similarity=-0.046 Sum_probs=31.9
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCc
Q 047130 667 RVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTD 706 (815)
Q Consensus 667 ~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~ 706 (815)
++++.|.||+|+--.|.++.+.... +.++.++++.+...
T Consensus 43 ~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~~ 81 (261)
T 2oq2_A 43 HLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTLHH 81 (261)
T ss_dssp SEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCSCB
T ss_pred CEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCCCC
Confidence 7999999999999999999888765 56678888876633
No 57
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=26.09 E-value=66 Score=29.78 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=28.9
Q ss_pred EecCCCChhHHHHHHHHhcCCCEEEEcCCCccc
Q 047130 584 AISPPKLMHEDVCMLALDKLASIVVLPFHRKWF 616 (815)
Q Consensus 584 ~vs~~~~m~~dI~~~A~e~~~dLIIlp~h~~~~ 616 (815)
.+-|...|+..|.++|++-++|+||-|..+..-
T Consensus 95 sirPP~El~~~i~~lA~~v~adliI~pL~~E~~ 127 (153)
T 2k4m_A 95 SIRPPAEIHSSLMRVADAVGARLIIKPLTGEDI 127 (153)
T ss_dssp EESCCTTTHHHHHHHHHHHTCEEEEECBTTBCC
T ss_pred EcCCCHHHHHHHHHHHHHcCCCEEEEcCCCCcC
Confidence 556889999999999999999999999976543
No 58
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=23.67 E-value=2.6e+02 Score=27.88 Aligned_cols=77 Identities=10% Similarity=0.054 Sum_probs=44.5
Q ss_pred cceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCccccccchhhhhHHHHHHHhcccCC--CCCCEEEEEEEe
Q 047130 665 SFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENN--FNQRVKYVVEMV 742 (815)
Q Consensus 665 ~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~--~~~~v~y~e~~V 742 (815)
.+.|+++.+|.++|.+.+.-+.+-++..++++..+-+-.. .|+++++++..... .++.+. .+
T Consensus 126 ~~~iIllTDG~~~d~~~~~~~a~~l~~~gi~i~~iGiG~~------------~~~~~L~~iA~~~~~~g~~~~~----~~ 189 (266)
T 4hqo_A 126 IQLVILMTDGVPNSKYRALEVANKLKQRNVRLAVIGIGQG------------INHQFNRLIAGCRPREPNCKFY----SY 189 (266)
T ss_dssp EEEEEEEECSCCSCHHHHHHHHHHHHHTTCEEEEEECSSS------------CCHHHHHHHHTCCTTCSSCTTE----EC
T ss_pred CeEEEEEccCCCCCchHHHHHHHHHHHCCCEEEEEecCcc------------cCHHHHHHhhCCCCCCCCCCeE----Ee
Confidence 4678888888887755555555555667787777665321 23355555553211 112333 24
Q ss_pred cCcHHHHHHHHhhCC
Q 047130 743 NEGQETLAKIQSVVP 757 (815)
Q Consensus 743 ~~g~~~~~~i~~~~~ 757 (815)
+|-.++.++.+++..
T Consensus 190 ~d~~~L~~i~~~l~~ 204 (266)
T 4hqo_A 190 ADWNEAVALIKPFIA 204 (266)
T ss_dssp SCHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHh
Confidence 666667777777654
No 59
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=23.16 E-value=1e+02 Score=30.38 Aligned_cols=75 Identities=12% Similarity=0.011 Sum_probs=40.3
Q ss_pred cchHHHHHHHHHHHhcCcceEEEEEEEecCCCCh--hHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHH
Q 047130 558 YSENVILSFKLFEEKNWGTACVYPFTAISPPKLM--HEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSV 635 (815)
Q Consensus 558 ~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~m--~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~V 635 (815)
....+.+.+++..++. +..+.... +. .+. ..+..+...++++|-||+-..... +...+ +-
T Consensus 16 ~~~~~~~gi~~~a~~~--g~~~~~~~--~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--------~~~~~-----~~ 77 (272)
T 3o74_A 16 SYARIAKQLEQGARAR--GYQLLIAS--SD-DQPDSERQLQQLFRARRCDALFVASCLPP--------EDDSY-----RE 77 (272)
T ss_dssp HHHHHHHHHHHHHHHT--TCEEEEEE--CT-TCHHHHHHHHHHHHHTTCSEEEECCCCCS--------SCCHH-----HH
T ss_pred hHHHHHHHHHHHHHHC--CCEEEEEe--CC-CCHHHHHHHHHHHHHcCCCEEEEecCccc--------cHHHH-----HH
Confidence 4566777788777663 34433322 22 222 234566677788988877432110 01111 34
Q ss_pred hhcCCCceEEEeccCC
Q 047130 636 LERAPCSVGILIDRGR 651 (815)
Q Consensus 636 l~~ApCsVgIlvdrg~ 651 (815)
++.+..|| |++|+..
T Consensus 78 ~~~~~iPv-V~~~~~~ 92 (272)
T 3o74_A 78 LQDKGLPV-IAIDRRL 92 (272)
T ss_dssp HHHTTCCE-EEESSCC
T ss_pred HHHcCCCE-EEEccCC
Confidence 55667787 5567753
No 60
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=21.99 E-value=5.7e+02 Score=25.03 Aligned_cols=51 Identities=8% Similarity=-0.069 Sum_probs=27.8
Q ss_pred cchHHHHHHHHHHHhc-CcceEEEEEEEecCCCChh--HHHHHHHHhcCCCEEEEc
Q 047130 558 YSENVILSFKLFEEKN-WGTACVYPFTAISPPKLMH--EDVCMLALDKLASIVVLP 610 (815)
Q Consensus 558 ~~~~i~~af~~~~~~~-~~~v~v~~~~~vs~~~~m~--~dI~~~A~e~~~dLIIlp 610 (815)
....+.+.+++..++. ...+.+.... ....+.. .+..+.+.++++|-||+-
T Consensus 23 ~~~~~~~gi~~~a~~~~g~~~~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiii~ 76 (304)
T 3gbv_A 23 YWTDVQKGIREAVTTYSDFNISANITH--YDPYDYNSFVATSQAVIEEQPDGVMFA 76 (304)
T ss_dssp HHHHHHHHHHHHHHHTGGGCEEEEEEE--ECSSCHHHHHHHHHHHHTTCCSEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEEc--CCCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 3455677777776653 2344443321 1112332 345666777888887765
No 61
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=21.94 E-value=1.9e+02 Score=29.61 Aligned_cols=75 Identities=7% Similarity=0.084 Sum_probs=40.0
Q ss_pred cchHHHHHHHHHHHhcCcceEEEEEEEecCCCChh--HHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHH
Q 047130 558 YSENVILSFKLFEEKNWGTACVYPFTAISPPKLMH--EDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSV 635 (815)
Q Consensus 558 ~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~m~--~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~V 635 (815)
....+.+.+++..++. +..+.... +. .+.. .+..+...++++|-||+-.... +.. . ..+.
T Consensus 77 ~~~~~~~gi~~~a~~~--g~~~~~~~--~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~~---------~~~---~-~~~~ 138 (338)
T 3dbi_A 77 YFSELLFHAARMAEEK--GRQLLLAD--GK-HSAEEERQAIQYLLDLRCDAIMIYPRFL---------SVD---E-IDDI 138 (338)
T ss_dssp HHHHHHHHHHHHHHHT--TCEEEEEE--CT-TSHHHHHHHHHHHHHTTCSEEEECCSSS---------CHH---H-HHHH
T ss_pred hHHHHHHHHHHHHHHC--CCEEEEEe--CC-CChHHHHHHHHHHHhCCCCEEEEeCCCC---------ChH---H-HHHH
Confidence 4566777777776653 33333222 21 2222 2355666778898887743111 111 1 1255
Q ss_pred hhcCCCceEEEeccCC
Q 047130 636 LERAPCSVGILIDRGR 651 (815)
Q Consensus 636 l~~ApCsVgIlvdrg~ 651 (815)
++..+.|| |++|+..
T Consensus 139 ~~~~~iPv-V~~~~~~ 153 (338)
T 3dbi_A 139 IDAHSQPI-MVLNRRL 153 (338)
T ss_dssp HHHCSSCE-EEESSCC
T ss_pred HHcCCCCE-EEEcCCC
Confidence 67778886 5567753
No 62
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=21.61 E-value=2e+02 Score=30.28 Aligned_cols=114 Identities=16% Similarity=0.107 Sum_probs=59.2
Q ss_pred hHHHHHHHhhcCCCceEEEeccCCcccccccccccCCcceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCcc
Q 047130 628 KRALNCSVLERAPCSVGILIDRGRIGRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDE 707 (815)
Q Consensus 628 ~r~vn~~Vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~ 707 (815)
...+.+.|-+....||++ |-. .... ..+|.+..++.++|+++.+.- +..+++......
T Consensus 197 ~~eiv~avr~~v~~pv~v---Rls----------~~~~------~~~g~~~~~~~~la~~L~~~G---vd~i~vs~g~~~ 254 (340)
T 3gr7_A 197 LGEVIDAVREVWDGPLFV---RIS----------ASDY------HPDGLTAKDYVPYAKRMKEQG---VDLVDVSSGAIV 254 (340)
T ss_dssp HHHHHHHHHHHCCSCEEE---EEE----------SCCC------STTSCCGGGHHHHHHHHHHTT---CCEEEEECCCSS
T ss_pred HHHHHHHHHHhcCCceEE---Eec----------cccc------cCCCCCHHHHHHHHHHHHHcC---CCEEEEecCCcc
Confidence 456667776666788877 432 0000 135667778999999998764 223443322111
Q ss_pred ccccchhhhhHHHHHHHhcccCCCCCCEEEEEEEecCcHHHHHHHHhhCCCccEEEEcccC
Q 047130 708 MISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRD 768 (815)
Q Consensus 708 ~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~ 768 (815)
..........+.+++++++.... -.++-. --+.+.++..+.+++ ...|+|.+||.-
T Consensus 255 ~~~~~~~~~~~~~~~~~ik~~~~--iPVi~~-GgI~s~e~a~~~L~~--G~aD~V~iGR~~ 310 (340)
T 3gr7_A 255 PARMNVYPGYQVPFAELIRREAD--IPTGAV-GLITSGWQAEEILQN--GRADLVFLGREL 310 (340)
T ss_dssp CCCCCCCTTTTHHHHHHHHHHTT--CCEEEE-SSCCCHHHHHHHHHT--TSCSEEEECHHH
T ss_pred CCCCCCCccccHHHHHHHHHHcC--CcEEee-CCCCCHHHHHHHHHC--CCeeEEEecHHH
Confidence 00000111223356677765431 123321 123445555566655 235999999974
No 63
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=21.54 E-value=4.8e+02 Score=27.05 Aligned_cols=114 Identities=14% Similarity=0.088 Sum_probs=56.2
Q ss_pred hHHHHHHHhhcCCCceEEEeccCCcccccccccccCCcceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCcc
Q 047130 628 KRALNCSVLERAPCSVGILIDRGRIGRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNTSINLTVFRFIVKTDE 707 (815)
Q Consensus 628 ~r~vn~~Vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~~I~~~f~gg~DdreAL~~a~rma~~~~v~ltvl~~~~~~~~ 707 (815)
...+.+.|-+..+.||++=.... . . ..+|-+..++.++|+++.+.-=. .+++......
T Consensus 197 ~~eiv~avr~~v~~pv~vris~~-----------~--~------~~~g~~~~~~~~~a~~l~~~Gvd---~i~v~~~~~~ 254 (338)
T 1z41_A 197 LREIIDEVKQVWDGPLFVRVSAS-----------D--Y------TDKGLDIADHIGFAKWMKEQGVD---LIDCSSGALV 254 (338)
T ss_dssp HHHHHHHHHHHCCSCEEEEEECC-----------C--C------STTSCCHHHHHHHHHHHHHTTCC---EEEEECCCSS
T ss_pred HHHHHHHHHHHcCCcEEEEecCc-----------c--c------CCCCCCHHHHHHHHHHHHHcCCC---EEEEecCccc
Confidence 35566666665578877622111 0 0 12567777899999999875422 3333322111
Q ss_pred ccccchhhhhHHHHHHHhcccCCCCCCEEEEEEEecCcHHHHHHHHhhCCCccEEEEcccC
Q 047130 708 MISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRD 768 (815)
Q Consensus 708 ~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~ 768 (815)
..........+.+++++++.... -.++-. --+.+.++..+.+++ ...|+|.+||.-
T Consensus 255 ~~~~~~~~~~~~~~~~~ir~~~~--iPVi~~-Ggi~s~~~a~~~l~~--G~aD~V~iGR~~ 310 (338)
T 1z41_A 255 HADINVFPGYQVSFAEKIREQAD--MATGAV-GMITDGSMAEEILQN--GRADLIFIGREL 310 (338)
T ss_dssp CCCCCCCTTTTHHHHHHHHHHHC--CEEEEC-SSCCSHHHHHHHHHT--TSCSEEEECHHH
T ss_pred cCCCCCCccchHHHHHHHHHHCC--CCEEEE-CCCCCHHHHHHHHHc--CCceEEeecHHH
Confidence 00000111122346666665321 112211 123345555566655 235999999974
No 64
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=21.47 E-value=5.6e+02 Score=26.74 Aligned_cols=122 Identities=14% Similarity=0.091 Sum_probs=62.0
Q ss_pred CccccCChhhHHHHHHHhhcCC--CceEEEeccCCcccccccccccCCcceEEEEecCCccHHHHHHHHHHHhhCCCeEE
Q 047130 619 GSIESDDNTKRALNCSVLERAP--CSVGILIDRGRIGRFISSELSLGSSFRVAMIFLGGSDDREALTLAKRMSQNTSINL 696 (815)
Q Consensus 619 g~~~~~~~~~r~vn~~Vl~~Ap--CsVgIlvdrg~~~~~~~~~~~~~~~~~I~~~f~gg~DdreAL~~a~rma~~~~v~l 696 (815)
|.++..-.-...+.+.|-+..+ .||++ |-. .. .. ..+|.+..++.++++++.+. +
T Consensus 187 GslenR~rf~~eiv~aVr~avg~d~pv~v---Rls-~~-------~~--------~~~g~~~~~~~~~a~~l~~~----v 243 (343)
T 3kru_A 187 NSIENRARFLIEVIDEVRKNWPENKPIFV---RVS-AD-------DY--------MEGGINIDMMVEYINMIKDK----V 243 (343)
T ss_dssp SSHHHHTHHHHHHHHHHHHTSCTTSCEEE---EEE-CC-------CS--------STTSCCHHHHHHHHHHHTTT----C
T ss_pred cchHhHHHHHHHHHHHHHhcCCccCCeEE---Eee-ch-------hh--------hccCccHHHHHHHHHHhhcc----c
Confidence 3444333345677777777763 46666 321 00 00 12567778999999999887 3
Q ss_pred EEEEeeecCccccccchhhhhHHHHHHHhcccCCCCCCEEEEEEEecCcHHHHHHHHhhCCCccEEEEcccC
Q 047130 697 TVFRFIVKTDEMISTNWEKVLDSEVLKEVKPENNFNQRVKYVVEMVNEGQETLAKIQSVVPKYDLVIVGRRD 768 (815)
Q Consensus 697 tvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~V~~g~~~~~~i~~~~~~~DLiivG~~~ 768 (815)
..+.+................+.+++++++.... -.++-+ --+.+.++..+.+++ ...|+|.+||.-
T Consensus 244 d~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~~--iPVi~~-Ggi~t~e~Ae~~l~~--G~aD~V~iGR~~ 310 (343)
T 3kru_A 244 DLIDVSSGGLLNVDINLYPGYQVKYAETIKKRCN--IKTSAV-GLITTQELAEEILSN--ERADLVALGREL 310 (343)
T ss_dssp SEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHT--CEEEEE-SSCCCHHHHHHHHHT--TSCSEEEESHHH
T ss_pred cEEeccCCceEeeeecccCceeehHHHHHHHhcC--ccccee-eeeeHHHHHHHHHhc--hhhHHHHHHHHH
Confidence 3344322211100000011123356666665421 122222 123345555566665 336999999974
No 65
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=20.74 E-value=1.5e+02 Score=27.21 Aligned_cols=61 Identities=13% Similarity=0.122 Sum_probs=41.9
Q ss_pred CCChhHHHHHHHHhcCCCEEEEcCCCccccCCccccCChhhHHHHHHHhhcCCCceEEEeccC
Q 047130 588 PKLMHEDVCMLALDKLASIVVLPFHRKWFIDGSIESDDNTKRALNCSVLERAPCSVGILIDRG 650 (815)
Q Consensus 588 ~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~dg~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdrg 650 (815)
....++.|.+++++++++.|++|.-. ..+|+-.......|.+..++.++.++||-.+=+|+
T Consensus 40 ~~~~~~~l~~li~~~~~~~ivVGlP~--~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~ 100 (150)
T 1vhx_A 40 GDYGLSRLSELIKDYTIDKIVLGFPK--NMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERL 100 (150)
T ss_dssp TBCCHHHHHHHHTTSEEEEEEEECCC--CBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSS
T ss_pred hHHHHHHHHHHHHHcCCCEEEEeeee--cCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCC
Confidence 45689999999999999999999653 23444221222346777777776789986654444
No 66
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=20.57 E-value=2.7 Score=28.47 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=23.2
Q ss_pred HHHHHHHHhCchhhHHHHHHHhhcCCC
Q 047130 315 GAGYISDLFGQHVYFGPFVFGLAVPAG 341 (815)
Q Consensus 315 ~~~~i~e~~G~~~~lGafvaGl~~~~~ 341 (815)
++++++|.+++|++++.+.+|+.+.+.
T Consensus 5 ~~Yl~AE~~~lSGIlavv~~Gi~~~~y 31 (33)
T 2k3c_A 5 MAYLSAELFHLSGIMALIASGVVMRPK 31 (33)
T ss_dssp TTTGGGSSSTTTTTTTTTTTTSCCCCC
T ss_pred HHHHHHHHhCcChHHHHHHHHHHHhhc
Confidence 456788999999999999999988764
No 67
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.01 E-value=2.2e+02 Score=28.89 Aligned_cols=53 Identities=19% Similarity=0.333 Sum_probs=31.9
Q ss_pred eEEEEecCCc---cHHHHHHHHHHHhhCCCeEEEEEEeeecCccccccchhhhhHHHHHHHhcc
Q 047130 667 RVAMIFLGGS---DDREALTLAKRMSQNTSINLTVFRFIVKTDEMISTNWEKVLDSEVLKEVKP 727 (815)
Q Consensus 667 ~I~~~f~gg~---DdreAL~~a~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 727 (815)
+.+++|.+|+ |+.+..++|+++.+ .++.++++-|=..+ ..++++. +|++....
T Consensus 108 ~rIIlf~ds~~~~~~~~l~~lak~lkk-~gI~v~vIgFG~~~------~n~~kLe-~l~~~~Ng 163 (268)
T 4b4t_W 108 QRIVAFVCSPISDSRDELIRLAKTLKK-NNVAVDIINFGEIE------QNTELLD-EFIAAVNN 163 (268)
T ss_dssp EEEEEEECSCCSSCHHHHHHHHHHHHH-HTEEEEEEEESSCC------SSCCHHH-HHHHHHCS
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHHH-cCCEEEEEEeCCCc------cchHHHH-HHHHHhcC
Confidence 3345666554 55666667766665 58999999985431 1234444 66666653
Done!