BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047133
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYB|A Chain A, Crystal Structure Of The Nicotiana Glutinosa Ribonuclease
Nw
pdb|1IYB|B Chain B, Crystal Structure Of The Nicotiana Glutinosa Ribonuclease
Nw
Length = 208
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 5/122 (4%)
Query: 9 AEMNKFWPSLTRDENENEQFWEREWKHHGR-GQPTLPPEEYFRTAITLVKAANLEAAFRG 67
+ M + WP+L FW EW+ HG + YF+ A+ L NL +G
Sbjct: 74 SRMQQNWPTLACPSGTGSAFWSHEWEKHGTCAENVFDQHGYFKKALDLKNQINLLEILQG 133
Query: 68 AGINPDGDKLNPRKYTRAINTRYGTTPLYKC----LNTSLLMEVTLCVDAKARNFVSCIA 123
AGI+PDG + AI + G P +C S L ++ +CVD N + C
Sbjct: 134 AGIHPDGGFYSLNSIKNAIRSAIGYAPGIECNVDESGNSQLYQIYICVDGSGSNLIECPI 193
Query: 124 RP 125
P
Sbjct: 194 FP 195
>pdb|1DIX|A Chain A, Crystal Structure Of Rnase Le
Length = 208
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Query: 9 AEMNKFWPSLTRDENENEQFWEREWKHHGRGQPTLPPEE--YFRTAITLVKAANLEAAFR 66
+ M + WP+L FW EW+ HG ++ + YF+ A+ L +L + +
Sbjct: 73 SSMQQNWPTLACPSGSGSTFWSHEWEKHGTCAESVLTNQHAYFKKALDLKNQIDLLSILQ 132
Query: 67 GAGINPDGDKLNPRKYTRAINTRYGTTPLYKC----LNTSLLMEVTLCVDAKARNFVSCI 122
GA I+PDG+ + AI + G TP +C S L +V +CVD + + C
Sbjct: 133 GADIHPDGESYDLVNIRNAIKSAIGYTPWIQCNVDQSGNSQLYQVYICVDGSGSSLIECP 192
Query: 123 ARP 125
P
Sbjct: 193 IFP 195
>pdb|1VCZ|A Chain A, Crystal Structure Of The Rnase Nt In Complex With 5'-Gmp
pdb|1VD1|A Chain A, Crystal Structure Of Rnase Nt In Complex With 5'-Amp
pdb|1VD3|A Chain A, Ribonuclease Nt In Complex With 2'-ump
Length = 217
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 11 MNKFWPSLTRDENENEQFWEREWKHHGRGQPTLPPEEYFRTAITLVKAANLEAAFRGAGI 70
M K WPSL ++ +FW EW HG L YF+ A+ K +NL + A I
Sbjct: 76 MEKNWPSLACPSSDGVRFWSHEWLKHGTCS-ALGERAYFQAALDFRKKSNLLENLKNAEI 134
Query: 71 NP-DGDKLNPRKYTRAINTRYGTTPLYKC----LNTSLLMEVTLCVDAKARNFVSCIARP 125
P +G+ +AI G +P +C + +V LCVD A +F+ C P
Sbjct: 135 TPRNGEHYTLESIKKAIEEGVGHSPYIECNVDTQGNHQIYQVYLCVDKTATDFIDCPIFP 194
>pdb|1IQQ|A Chain A, Crystal Structure Of Japanese Pear S3-Rnase
Length = 200
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 5 KSFAAEMNKFWPSLTRDENENEQFWEREWKHHGR-GQPTLPPE-EYFRTAITLV--KAAN 60
K ++ WP++ D +N FW++EW HG G PT+ E YF T I + K N
Sbjct: 58 KLLEHQLEIIWPNVF-DRTKNNLFWDKEWMKHGSCGYPTIDNENHYFETVIKMYISKKQN 116
Query: 61 LEAAFRGAGINPDGDKLNPRKYTRAI----NTRYGTTPLYKCLNTSLLMEVTLCVDAKAR 116
+ A I PDG K AI + + K T+ L+E+TLC D
Sbjct: 117 VSRILSKAKIEPDGKKRALLDIENAIRNGADNKKPKLKCQKKGTTTELVEITLCSDKSGE 176
Query: 117 NFVSCIA--RPSSLSSCPGDII 136
+F+ C P S CP + I
Sbjct: 177 HFIDCPHPFEPISPHYCPTNNI 198
>pdb|1J1G|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant N71s In Complex
With 5'-Gmp
Length = 190
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 8/119 (6%)
Query: 9 AEMNKFWPSLTRDENENEQFWEREWKHHGR-GQPTLPPEEYFRTAITLVKAANLEAAFRG 67
+++N WPS+ R N+ QFW EW HG + T YF+ A+ + ++ A R
Sbjct: 63 SQLNTLWPSVLRANNQ--QFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGALRP 120
Query: 68 AGINPDGDKLNPRKYTRAINTRYGTTPLYKC-----LNTSLLMEVTLCVDAKARNFVSC 121
P+G + + + ++G P +C S L+EV C + C
Sbjct: 121 HAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVEVVACFAQDGSTLIDC 179
>pdb|1J1F|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant N71t In Complex
With 5'-Gmp
Length = 191
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%)
Query: 9 AEMNKFWPSLTRDENENEQFWEREWKHHGR-GQPTLPPEEYFRTAITLVKAANLEAAFRG 67
+++N WP++ R N+ QFW EW HG + T YF+ A+ + ++ A R
Sbjct: 64 SQLNTLWPTVLRANNQ--QFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGALRP 121
Query: 68 AGINPDGDKLNPRKYTRAINTRYGTTPLYKC-----LNTSLLMEVTLCVDAKARNFVSC 121
P+G + + + ++G P +C S L+EV C + C
Sbjct: 122 HAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVEVVACFAQDGSTLIDC 180
>pdb|1UCG|A Chain A, Crystal Structure Of Ribonuclease Mc1 N71t Mutant
pdb|1UCG|B Chain B, Crystal Structure Of Ribonuclease Mc1 N71t Mutant
Length = 190
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 8/119 (6%)
Query: 9 AEMNKFWPSLTRDENENEQFWEREWKHHGR-GQPTLPPEEYFRTAITLVKAANLEAAFRG 67
+++N WP++ R N+ QFW EW HG + T YF+ A+ + ++ A R
Sbjct: 63 SQLNTLWPTVLRANNQ--QFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGALRP 120
Query: 68 AGINPDGDKLNPRKYTRAINTRYGTTPLYKC-----LNTSLLMEVTLCVDAKARNFVSC 121
P+G + + + ++G P +C S L++V C + C
Sbjct: 121 HAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVQVVACFAQDGSTLIDC 179
>pdb|1BK7|A Chain A, Ribonuclease Mc1 From The Seeds Of Bitter Gourd
pdb|1UCA|A Chain A, Crystal Structure Of The Ribonuclease Mc1 From Bitter
Gourd Seeds Complexed With 2'-Ump
pdb|1UCC|A Chain A, Crystal Structure Of The Ribonuclease Mc1 From Bitter
Gourd Seeds Complexed With 3'-Ump.
pdb|1UCD|A Chain A, Crystal Structure Of Ribonuclease Mc1 From Bitter Gourd
Seeds Complexed With 5'-Ump
Length = 190
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 8/119 (6%)
Query: 9 AEMNKFWPSLTRDENENEQFWEREWKHHGR-GQPTLPPEEYFRTAITLVKAANLEAAFRG 67
+++N WP++ R N+ QFW EW HG + T YF+ A+ + ++ A R
Sbjct: 63 SQLNTLWPNVLRANNQ--QFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGALRP 120
Query: 68 AGINPDGDKLNPRKYTRAINTRYGTTPLYKC-----LNTSLLMEVTLCVDAKARNFVSC 121
P+G + + + ++G P +C S L++V C + C
Sbjct: 121 HAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVQVVACFAQDGSTLIDC 179
>pdb|1BOL|A Chain A, The Crystal Structure Of Ribonuclease Rh From Rhizopus
Niveus At 2.0 A Resolution
Length = 222
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 57/144 (39%), Gaps = 18/144 (12%)
Query: 4 NKSFAAEMNKFWPSLTRDENENEQFWEREWKHHGRGQPTLPPE------------EYFRT 51
+ S M +WPS ++ N FW EW HG T P+ +YF+
Sbjct: 80 DSSLYNSMLTYWPS---NQGNNNVFWSHEWSKHGTCVSTYDPDCYDNYEEGEDIVDYFQK 136
Query: 52 AITLVKAANLEAAFRGAGINPDGDKLNPRKYTRAINTRYGTTPLYKCLNTSLLMEVTLCV 111
A+ L N+ AF GI P G + AI + +G C ++ L +V L
Sbjct: 137 AMDLRSQYNVYKAFSSNGITP-GGTYTATEMQSAIESYFGAKAKIDC-SSGTLSDVALYF 194
Query: 112 DAKARNFVSCIARPSSLSSCPGDI 135
+ R+ I S SC GD+
Sbjct: 195 YVRGRD-TYVITDALSTGSCSGDV 217
>pdb|3T0O|A Chain A, Crystal Structure Analysis Of Human Rnase T2
Length = 238
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 10/131 (7%)
Query: 1 LESNKSFAAEMNKFWPSLTRDENENEQFWEREWKHHGRGQPTL----PPEEYFRTAITLV 56
LE K EM +WP + +FW+ EW+ HG + ++YF ++ L
Sbjct: 59 LEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGTCAAQVDALNSQKKYFGRSLELY 118
Query: 57 KAANLEAAFRGAGINPDGDKLNPRKYTRAINTRYGTTPLYKCLNTS------LLMEVTLC 110
+ +L + GI P + + A+ YG P +CL S + ++ LC
Sbjct: 119 RELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIPKIQCLPPSQDEEVQTIGQIELC 178
Query: 111 VDAKARNFVSC 121
+ + + +C
Sbjct: 179 LTKQDQQLQNC 189
>pdb|1V9H|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant Y101a In Complex
With 5'-Ump
Length = 197
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 8/119 (6%)
Query: 9 AEMNKFWPSLTRDENENEQFWEREWKHHGR-GQPTLPPEEYFRTAITLVKAANLEAAFRG 67
+++N WP++ R N+ QFW EW HG + T F+ A+ + ++ A R
Sbjct: 70 SQLNTLWPNVLRANNQ--QFWSHEWTKHGTCSESTFNQAAAFKLAVDMRNNYDIIGALRP 127
Query: 68 AGINPDGDKLNPRKYTRAINTRYGTTPLYKC-----LNTSLLMEVTLCVDAKARNFVSC 121
P+G + + + ++G P +C S L+EV C + C
Sbjct: 128 HAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVEVVACFAQDGSTLIDC 186
>pdb|1SGL|A Chain A, The Three-Dimensional Structure And X-Ray Sequence Reveal
That Trichomaglin Is A Novel S-Like Ribonuclease
Length = 209
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 10/133 (7%)
Query: 7 FAAEMNKFWPSL-----TRDENENEQFWEREWKHHGR-GQPTLPPE-EYFRTAITLVKAA 59
F ++ ++WP+ N E W ++++ HG P + E YF+ + L
Sbjct: 71 FFGKLVEYWPTYRCALEQSCNNRKEILWGQQYEKHGTCASPVIKGEWNYFKKTLKLFMKY 130
Query: 60 NLEAAFRGAGINPDGDKL-NPRKYTRAINTRYGTTPLYKCLNTSLLMEVTLCVDA--KAR 116
N++ A AGI K+ + + A+ + G P +C L+ +++LC D K R
Sbjct: 131 NVDKALEDAGIVASNSKMYDLKDIVVAVESAVGARPKLRCDEEGLVQKLSLCFDKDFKPR 190
Query: 117 NFVSCIARPSSLS 129
+ V + P +S
Sbjct: 191 DCVQVGSCPRYVS 203
>pdb|3D3Z|A Chain A, Crystal Structure Of Actibind A T2 Rnase
Length = 247
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Query: 11 MNKFWPSLTRDENENEQFWEREWKHHGRGQPTLPPE------------EYFRTAITLVKA 58
M ++WP +E+E FWE EW HG T+ P ++F+ + L K
Sbjct: 91 MKEYWPDY-EGADEDESFWEHEWNKHGTCINTIEPSCYTDYYAQEEVGDFFQQVVDLFKT 149
Query: 59 ANLEAAFRGAGINPDGD 75
+ A AGI P D
Sbjct: 150 LDSYTALSDAGITPSED 166
>pdb|3TBJ|A Chain A, The 1.7a Crystal Structure Of Actibind A T2 Ribonucleases
As Antitumorigenic Agents
Length = 237
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Query: 11 MNKFWPSLTRDENENEQFWEREWKHHGRGQPTLPPE------------EYFRTAITLVKA 58
M ++WP +E+E FWE EW HG T+ P ++F+ + L K
Sbjct: 91 MKEYWPDY-EGADEDESFWEHEWNKHGTCINTIEPSCYTDYYAQEEVGDFFQQVVDLFKT 149
Query: 59 ANLEAAFRGAGINPDGD 75
+ A AGI P D
Sbjct: 150 LDSYTALSDAGITPSED 166
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 27.3 bits (59), Expect = 2.8, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 52 AITLVKAANLEAAFRGAGINPDGDKLN 78
AI L A +A+F G G++PD +LN
Sbjct: 525 AIALRMAEERQASFVGFGVSPDATQLN 551
>pdb|2BPE|A Chain A, Structure Of Murine Dectin-1
pdb|2BPE|B Chain B, Structure Of Murine Dectin-1
pdb|2BPH|A Chain A, Structure Of Murine Dectin-1
pdb|2BPH|B Chain B, Structure Of Murine Dectin-1
Length = 140
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 1 LESNKSFAAEMNKFWPSLTRDENENEQFWE 30
+ES S + +N FW L+R+++E FWE
Sbjct: 55 IESQTS-SHRINAFWIGLSRNQSEGPWFWE 83
>pdb|2CL8|A Chain A, Dectin-1 In Complex With Beta-Glucan
pdb|2CL8|B Chain B, Dectin-1 In Complex With Beta-Glucan
Length = 139
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 1 LESNKSFAAEMNKFWPSLTRDENENEQFWE 30
+ES S + +N FW L+R+++E FWE
Sbjct: 54 IESQTS-SHRINAFWIGLSRNQSEGPWFWE 82
>pdb|2BPD|A Chain A, Structure Of Murine Dectin-1
pdb|2BPD|B Chain B, Structure Of Murine Dectin-1
Length = 142
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 1 LESNKSFAAEMNKFWPSLTRDENENEQFWE 30
+ES S + +N FW L+R+++E FWE
Sbjct: 64 IESQTS-SHRINAFWIGLSRNQSEGPWFWE 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,547,616
Number of Sequences: 62578
Number of extensions: 171815
Number of successful extensions: 480
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 445
Number of HSP's gapped (non-prelim): 21
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)