Query 047133
Match_columns 139
No_of_seqs 128 out of 1038
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 13:48:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iyb_A Ribonuclease, ribonucle 100.0 9.8E-41 3.3E-45 252.8 14.9 133 3-138 68-206 (208)
2 1vcz_A RNAse NGR3; hydrolase, 100.0 5.8E-40 2E-44 250.0 13.6 133 3-138 68-206 (217)
3 1ucd_A Ribonuclease MC; alpha 100.0 1.5E-39 5E-44 243.3 13.3 126 4-137 58-190 (190)
4 1sgl_A Trichomaglin; S-like ri 100.0 2E-39 6.8E-44 245.7 13.2 130 3-138 67-205 (209)
5 1jy5_A CALSEPRRP; RNAse, alpha 100.0 2.2E-39 7.5E-44 246.0 13.4 131 3-139 67-206 (212)
6 1iqq_A S3-RNAse; japanese PEAR 100.0 6.2E-39 2.1E-43 241.5 13.6 134 3-137 56-200 (200)
7 1ioo_A SF11-RNAse; SELF-incomp 100.0 7.6E-39 2.6E-43 240.3 13.4 128 6-139 58-196 (196)
8 3t0o_A Ribonuclease T2, ribonu 100.0 2.4E-38 8.4E-43 243.9 13.1 136 2-138 60-225 (238)
9 1bol_A Protein (ribonuclease R 100.0 3.6E-38 1.2E-42 241.0 12.0 126 5-138 81-220 (222)
10 3d3z_A Actibind; RNAse, hydrol 100.0 2E-37 7E-42 240.2 12.2 131 4-138 84-233 (247)
11 2pqx_A Ribonuclease I; hydrola 100.0 3.5E-32 1.2E-36 210.4 10.6 120 5-138 106-241 (245)
12 4dvk_A E(RNS) glycoprotein; T2 99.2 1.9E-12 6.4E-17 93.8 -0.6 45 3-55 53-97 (165)
13 2ciw_A Chloroperoxidase; oxido 75.4 1.9 6.4E-05 33.8 2.9 33 61-94 32-66 (299)
14 2kdo_A Ribosome maturation pro 28.9 39 0.0013 25.6 2.9 29 60-88 112-141 (252)
15 3oqg_A HPY188I; endonuclease-D 28.4 32 0.0011 23.7 2.2 19 30-52 102-120 (180)
16 2wbm_A MTHSBDS, ribosome matur 25.3 37 0.0013 25.7 2.2 30 59-88 122-152 (252)
17 1qzm_A ATP-dependent protease 22.2 94 0.0032 19.7 3.4 36 53-88 9-44 (94)
18 4gdk_C APG16-like 1, autophagy 20.3 20 0.00067 19.0 -0.2 28 32-59 5-35 (36)
19 1t95_A Hypothetical protein AF 20.1 43 0.0015 25.2 1.7 30 59-88 107-137 (240)
No 1
>1iyb_A Ribonuclease, ribonuclease M5; hydrolase; HET: 5GP; 1.50A {Nicotiana glutinosa} SCOP: d.124.1.1 PDB: 1dix_A
Probab=100.00 E-value=9.8e-41 Score=252.76 Aligned_cols=133 Identities=28% Similarity=0.576 Sum_probs=118.3
Q ss_pred cchhHHHHHhccCCCCccCCCCChhhHHHhhhccccc-CCCCChHHHHHHHHHHHHhcCHHHHHHhCCCCCCCCCCCHHH
Q 047133 3 SNKSFAAEMNKFWPSLTRDENENEQFWEREWKHHGRG-QPTLPPEEYFRTAITLVKAANLEAAFRGAGINPDGDKLNPRK 81 (139)
Q Consensus 3 ~~~~l~~~L~~~Wp~l~~~~~~~~~fw~hEW~KHGt~-~~~~~~~~YF~~al~l~~~~~i~~~L~~~gI~P~~~~y~~~~ 81 (139)
.+++++++|+.+||+|.++.+++..||+|||+||||| ...++|.+||++|++|++++|++++|+++||+|++++|++++
T Consensus 68 ~i~~l~~~L~~~Wp~l~~~~~~~~~fW~hEw~KHGTC~~~~~~q~~YF~~a~~l~~~~~~~~~L~~~gI~P~~~~~t~~~ 147 (208)
T 1iyb_A 68 QVSDLISRMQQNWPTLACPSGTGSAFWSHEWEKHGTCAENVFDQHGYFKKALDLKNQINLLEILQGAGIHPDGGFYSLNS 147 (208)
T ss_dssp GGGGGHHHHHHHSCCCCSSCCCSHHHHHHHHHHTGGGGTTTCCHHHHHHHHHHHHHHCCHHHHHHHTTCCSSSCEEEHHH
T ss_pred hcchhhhHhhccCCCcccCCCCcchHHHhhccCCeeeCccccCHHHHHHHHHHHHHHcChHHHHHHCCcccCCceEeHHH
Confidence 4567999999999999655677899999999999995 544599999999999999999999999999999777899999
Q ss_pred HHHHHHH-hCCCCcEEEecc----CCcEEEEEEeeecCCCceeeCCCCCCCCCCCCCceeec
Q 047133 82 YTRAINT-RYGTTPLYKCLN----TSLLMEVTLCVDAKARNFVSCIARPSSLSSCPGDIIWA 138 (139)
Q Consensus 82 i~~al~~-~g~~~p~l~C~~----~~~L~Ev~~C~~~~~~~~i~Cp~~~~~~~~C~~~i~~p 138 (139)
|++||++ +| ..|.|+|.. ..+|.||++|||+++.++|+||... ..+||+.|.||
T Consensus 148 I~~Ai~~~~g-~~p~l~C~~~~~~~~~L~Ev~iC~~~~~~~~i~C~~~~--~~~C~~~i~~p 206 (208)
T 1iyb_A 148 IKNAIRSAIG-YAPGIECNVDESGNSQLYQIYICVDGSGSNLIECPIFP--RGKCGSSIEFP 206 (208)
T ss_dssp HHHHHHHHHS-SCCEEEEEECTTCCEEEEEEEEEEETTSSSBCCCSCCC--CCCCCSEEECC
T ss_pred HHHHHHHHhC-CCeEEEEeeCCCCCeEEEEEEEEecCCCCeeecCCCCC--CCCCCCCcCcC
Confidence 9999999 98 899999974 3699999999999976999999743 34799999987
No 2
>1vcz_A RNAse NGR3; hydrolase, ribonuclease; HET: 5GP; 1.80A {Nicotiana glutinosa} PDB: 1vd1_A* 1vd3_A*
Probab=100.00 E-value=5.8e-40 Score=249.99 Aligned_cols=133 Identities=29% Similarity=0.584 Sum_probs=117.5
Q ss_pred cchhHHHHHhccCCCCccCCCCChhhHHHhhhcccccCCCCChHHHHHHHHHHHHhcCHHHHHHhCCCCC-CCCCCCHHH
Q 047133 3 SNKSFAAEMNKFWPSLTRDENENEQFWEREWKHHGRGQPTLPPEEYFRTAITLVKAANLEAAFRGAGINP-DGDKLNPRK 81 (139)
Q Consensus 3 ~~~~l~~~L~~~Wp~l~~~~~~~~~fw~hEW~KHGt~~~~~~~~~YF~~al~l~~~~~i~~~L~~~gI~P-~~~~y~~~~ 81 (139)
.+.+|+++|+.+||++.++..++..||+|||+|||||.. .+|.+||++|++|++++|++++|+++||+| ++..|++++
T Consensus 68 ~~~~l~~~L~~~Wp~l~~~~~~~~~fW~hEw~KHGTC~~-~~~~~YF~~a~~l~~~~n~~~~L~~~gI~Ps~g~~~t~~~ 146 (217)
T 1vcz_A 68 EISDLISTMEKNWPSLACPSSDGVRFWSHEWLKHGTCSA-LGERAYFQAALDFRKKSNLLENLKNAEITPRNGEHYTLES 146 (217)
T ss_dssp GGGGGHHHHHHHSCCCSSSCCCSHHHHHHHHHHTGGGTT-SCHHHHHHHHHHHHHHHCHHHHHHHTTCCCEEEEEEEHHH
T ss_pred hhhhhhhhhhccCcccccCCCCcchHHhhhccCCeecCC-CCHHHHHHHHHHHHHHcccHHHHHHCCCccCcCccccHHH
Confidence 467899999999999965566778999999999999653 399999999999999999999999999999 678899999
Q ss_pred HHHHHHH-hCCCCcEEEecc----CCcEEEEEEeeecCCCceeeCCCCCCCCCCCCCceeec
Q 047133 82 YTRAINT-RYGTTPLYKCLN----TSLLMEVTLCVDAKARNFVSCIARPSSLSSCPGDIIWA 138 (139)
Q Consensus 82 i~~al~~-~g~~~p~l~C~~----~~~L~Ev~~C~~~~~~~~i~Cp~~~~~~~~C~~~i~~p 138 (139)
|++||++ +| ..|.|+|.. ..+|.||+||||+++.++|+||.... .++|++.|.||
T Consensus 147 I~~Ai~~~~g-~~p~l~C~~~~~~~~~L~Ev~iC~~~~~~~~i~C~~~~~-~~~C~~~i~~p 206 (217)
T 1vcz_A 147 IKKAIEEGVG-HSPYIECNVDTQGNHQIYQVYLCVDKTATDFIDCPIFPH-GRGCGSKIEFP 206 (217)
T ss_dssp HHHHHHHHHS-SCCEEEEEECTTSCEEEEEEEEEEETTSSSEECCSSCCC-CCCCCSEEEEC
T ss_pred HHHHHHHHHC-CCeEEEEeecCCCCeEEEEEEEEecCCCCeeeeCCCCCC-CCCCCCCeEEc
Confidence 9999999 98 899999974 36899999999999779999996332 14799999887
No 3
>1ucd_A Ribonuclease MC; alpha plus beta, hydrolase; HET: U5P; 1.30A {Momordica charantia} SCOP: d.124.1.1 PDB: 1bk7_A* 1ucc_A* 1uca_A* 1v9h_A* 1j1f_A* 1ucg_A 1j1g_A*
Probab=100.00 E-value=1.5e-39 Score=243.28 Aligned_cols=126 Identities=22% Similarity=0.569 Sum_probs=112.5
Q ss_pred chhHHHHHhccCCCCccCCCCChhhHHHhhhccccc-CCCCChHHHHHHHHHHHHhcCHHHHHHhCCCCCCCCCCCHHHH
Q 047133 4 NKSFAAEMNKFWPSLTRDENENEQFWEREWKHHGRG-QPTLPPEEYFRTAITLVKAANLEAAFRGAGINPDGDKLNPRKY 82 (139)
Q Consensus 4 ~~~l~~~L~~~Wp~l~~~~~~~~~fw~hEW~KHGt~-~~~~~~~~YF~~al~l~~~~~i~~~L~~~gI~P~~~~y~~~~i 82 (139)
+.++++.|+.+||++. .+++..||+|||+||||| ...++|.+||++|++|++++|++++|+++||+|+++.|++++|
T Consensus 58 ~~~l~~~L~~~Wp~l~--~~~~~~fW~hEw~KHGTC~~~~~~~~~YF~~a~~l~~~~~~~~~L~~~~I~P~~~~~t~~~I 135 (190)
T 1ucd_A 58 ISHLQSQLNTLWPNVL--RANNQQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGALRPHAAGPNGRTKSRQAI 135 (190)
T ss_dssp GGGGHHHHHHHSCCSS--SSCHHHHHHHHHHHTGGGGTTTCCHHHHHHHHHHHHHTCCHHHHHGGGTCSCSSSEEEHHHH
T ss_pred cchhhHHHHhcCCCcC--CCCCCchHHhccccCcEeCCCCCCHHHHHHHHHHHHHHcCHHHHHHHCCCCCCCceEeHHHH
Confidence 4679999999999995 346689999999999995 4457999999999999999999999999999997566999999
Q ss_pred HHHHHH-hCCCCcEEEecc-----CCcEEEEEEeeecCCCceeeCCCCCCCCCCCCCceee
Q 047133 83 TRAINT-RYGTTPLYKCLN-----TSLLMEVTLCVDAKARNFVSCIARPSSLSSCPGDIIW 137 (139)
Q Consensus 83 ~~al~~-~g~~~p~l~C~~-----~~~L~Ev~~C~~~~~~~~i~Cp~~~~~~~~C~~~i~~ 137 (139)
++||++ +| +.|.|+|.. ..+|.||++|||+++.++|+||. .+|+++|+|
T Consensus 136 ~~ai~~~~g-~~p~l~C~~~~~~~~~~L~Ev~iC~~~~~~~~i~Cp~-----~~C~~~~~f 190 (190)
T 1ucd_A 136 KGFLKAKFG-KFPGLRCRTDPQTKVSYLVQVVACFAQDGSTLIDCTR-----DTCGANFIF 190 (190)
T ss_dssp HHHHHHHHS-SCCEEEEEECTTTCCEEEEEEEEEEETTSSSEECCCC-----CCCCSEEEC
T ss_pred HHHHHHHHC-CCeEEEeccCCCCCCcEEEEEEEEecCCCCeeccCCC-----CCCCCCCCC
Confidence 999999 98 899999984 26999999999999669999987 369998776
No 4
>1sgl_A Trichomaglin; S-like ribonuclease, X-RAY sequence, MASS SPEC analysis, hydrolase; 2.20A {Trichosanthes lepiniana} SCOP: d.124.1.1
Probab=100.00 E-value=2e-39 Score=245.75 Aligned_cols=130 Identities=22% Similarity=0.526 Sum_probs=114.8
Q ss_pred cchhHHHHHhccCCCCccC-----CCCChhhHHHhhhcccc-cCCCC-ChHHHHHHHHHHHHhcCHHHHHHhCCCCC-CC
Q 047133 3 SNKSFAAEMNKFWPSLTRD-----ENENEQFWEREWKHHGR-GQPTL-PPEEYFRTAITLVKAANLEAAFRGAGINP-DG 74 (139)
Q Consensus 3 ~~~~l~~~L~~~Wp~l~~~-----~~~~~~fw~hEW~KHGt-~~~~~-~~~~YF~~al~l~~~~~i~~~L~~~gI~P-~~ 74 (139)
.+.+|+++|+.+||+|.++ .+++..||+|||+|||| |...+ +|.+||++|++|++++|++++|+++||+| ++
T Consensus 67 ~~~~l~~~L~~~Wp~l~~~~~~~~~~~~~~fW~hEw~KHGTC~~~~~~~~~~YF~~a~~L~~~~~l~~~L~~~gI~P~~g 146 (209)
T 1sgl_A 67 EIMPFFGKLVEYWPTYRCALEQSCNNRKEILWGQQYEKHGTCASPVIKGEWNYFKKTLKLFMKYNVDKALEDAGIVASNS 146 (209)
T ss_dssp GGGGGHHHHHHHSCBSCSSCEECGGGCEECHHHHHHHHTGGGGTTTSCSHHHHHHHHHHHHHHTCHHHHHHHHTCCCCSS
T ss_pred hhhhHHHHHHccCcCcccccccccCCCcchHHHHhhhcCccccccccccHHHHHHHHHHHHHHcChHHHHHHCCCcCCCC
Confidence 4567999999999999532 24567899999999999 55556 99999999999999999999999999999 57
Q ss_pred CCCCHHHHHHHHHH-hCCCCcEEEeccCCcEEEEEEeeecCCCceeeCCCCCCCCCCCCCceeec
Q 047133 75 DKLNPRKYTRAINT-RYGTTPLYKCLNTSLLMEVTLCVDAKARNFVSCIARPSSLSSCPGDIIWA 138 (139)
Q Consensus 75 ~~y~~~~i~~al~~-~g~~~p~l~C~~~~~L~Ev~~C~~~~~~~~i~Cp~~~~~~~~C~~~i~~p 138 (139)
..|++++|++||++ +| +.|.|+|.+.++|.||++|||+++ ++|+|+. ..+||+.|.||
T Consensus 147 ~~yt~~~I~~Ai~~~~g-~~p~l~C~~~~~L~Ev~iC~~~~~-~~i~C~~----~~~C~~~i~~p 205 (209)
T 1sgl_A 147 KMYDLKDIVVAVESAVG-ARPKLRCDEEGLVQKLSLCFDKDF-KPRDCVQ----VGSCPRYVSLP 205 (209)
T ss_dssp CEEEHHHHHHHHHHHHS-SCCEEEECTTSBEEEEEEEEETTC-CEECCCC----CCCSCSEEECC
T ss_pred ccccHHHHHHHHHHHhC-CCeEEEECCCCeEEEEEEEeCCCc-cEeCCCC----CCCCCCCeEeC
Confidence 88999999999999 98 899999986469999999999997 8999952 35799999997
No 5
>1jy5_A CALSEPRRP; RNAse, alpha-beta protein, hydrolase; 2.05A {Calystegia sepium} SCOP: d.124.1.1
Probab=100.00 E-value=2.2e-39 Score=245.97 Aligned_cols=131 Identities=23% Similarity=0.468 Sum_probs=114.7
Q ss_pred cchhHHHHHhccCCCCccCCCC-----ChhhHHHhhhcccccC-CC-CChHHHHHHHHHHHHhcCHHHHHHhCCCCC-CC
Q 047133 3 SNKSFAAEMNKFWPSLTRDENE-----NEQFWEREWKHHGRGQ-PT-LPPEEYFRTAITLVKAANLEAAFRGAGINP-DG 74 (139)
Q Consensus 3 ~~~~l~~~L~~~Wp~l~~~~~~-----~~~fw~hEW~KHGt~~-~~-~~~~~YF~~al~l~~~~~i~~~L~~~gI~P-~~ 74 (139)
.+.+|++.|+++||++..+... +..||+|||+|||||. .. .+|.+||++|++|++++|++++|+++||+| ++
T Consensus 67 ~i~~l~~~L~~~WP~l~~~~~~~~~~~~~~fW~hEw~KHGTC~~~~~~~~~~YF~~a~~l~~~~nl~~~L~~~gI~Ps~g 146 (212)
T 1jy5_A 67 EISILSNDLSKYWPSYSCPSSSACGSFDASDLAYEWAKHGTCSSPVLGNQYEYFSTTLMLYFKYNISEILSESGYLPSNT 146 (212)
T ss_dssp GGGGGHHHHHHHSCBCCSSCEEETTEEESSHHHHHHHHTGGGGTTTSCSHHHHHHHHHHHHHHSCHHHHHHTTTCCCCSS
T ss_pred hhHHHHHHHHhhCCcccccccccccccchhHHHHhhhhCceeCcccccCHHHHHHHHHHHHHhcCHHHHHHHcCCcCCCC
Confidence 4678999999999999643322 2389999999999954 43 399999999999999999999999999999 68
Q ss_pred CCCCHHHHHHHHHH-hCCCCcEEEeccCCcEEEEEEeeecCCCceeeCCCCCCCCCCCCCceeecC
Q 047133 75 DKLNPRKYTRAINT-RYGTTPLYKCLNTSLLMEVTLCVDAKARNFVSCIARPSSLSSCPGDIIWAL 139 (139)
Q Consensus 75 ~~y~~~~i~~al~~-~g~~~p~l~C~~~~~L~Ev~~C~~~~~~~~i~Cp~~~~~~~~C~~~i~~p~ 139 (139)
..|++++|++||++ +| +.|.|+|.+ +.|.||++|||+++ ++|+||. ...+|++.|.||.
T Consensus 147 ~~yt~~~I~~Ai~~~~g-~~p~l~C~~-~~l~ev~lC~~~~~-~~i~C~~---~~~~C~~~i~~p~ 206 (212)
T 1jy5_A 147 AEYKVEGIMSAIQSALR-VTPVVKCKS-DAVEQVQICFDKTL-QLQECPS---TASTCPSLVSLPI 206 (212)
T ss_dssp CCEEHHHHHHHHHHHHS-SCCEEEEET-TEEEEEEEEECTTS-CEECCCC---CCCCSCSEEBCCC
T ss_pred ceEcHHHHHHHHHHhhC-CCEEEEeCC-CCcceEEEEEcCCC-cEecCCC---CCCCCCCCEEeCC
Confidence 89999999999999 98 899999998 89999999999997 8999993 2357999999983
No 6
>1iqq_A S3-RNAse; japanese PEAR, SELF-incompatibilit family ribonuclease, hydrolase; HET: NAG BMA MAN; 1.50A {Pyrus pyrifolia} SCOP: d.124.1.1
Probab=100.00 E-value=6.2e-39 Score=241.48 Aligned_cols=134 Identities=32% Similarity=0.639 Sum_probs=115.7
Q ss_pred cchhHHHHHhccCCCCccCCCCChhhHHHhhhcccccC-C-CCChHHHHHHHHHHH--HhcCHHHHHHhCCCCCCCCCCC
Q 047133 3 SNKSFAAEMNKFWPSLTRDENENEQFWEREWKHHGRGQ-P-TLPPEEYFRTAITLV--KAANLEAAFRGAGINPDGDKLN 78 (139)
Q Consensus 3 ~~~~l~~~L~~~Wp~l~~~~~~~~~fw~hEW~KHGt~~-~-~~~~~~YF~~al~l~--~~~~i~~~L~~~gI~P~~~~y~ 78 (139)
.+.+|+++|+.+||++. ..+++..||+|||+|||||. + .++|.+||++|++|+ +++|++++|+++||+|++..|+
T Consensus 56 ~~~~l~~~L~~~Wp~~~-~~~~~~~fW~hEw~KHGTC~~~~~~~~~~YF~~a~~l~~~~k~n~~~~L~~~~I~P~~~~~t 134 (200)
T 1iqq_A 56 REKLLEHQLEIIWPNVF-DRTKNNLFWDKEWMKHGSCGYPTIDNENHYFETVIKMYISKKQNVSRILSKAKIEPDGKKRA 134 (200)
T ss_dssp CCHHHHHHHHHHSCCSS-CGGGHHHHHHHHHHHTGGGSTTTSCSHHHHHHHHHHHHTTTCCCHHHHHHHTTCCSSCCEEC
T ss_pred cchhhhhhhhccCCCcc-cCCCCChHHHhhhhCCcCcCCcccCCHHHHHHHHHHHHhhcccCHHHHHHHcCCccCCCeec
Confidence 35789999999999995 24567899999999999954 5 479999999999999 6799999999999999767799
Q ss_pred HHHHHHHHHH-hCCCCcEEEecc---CCcEEEEEEeeecCCCceeeCCCC--CCCCCCCCCc-eee
Q 047133 79 PRKYTRAINT-RYGTTPLYKCLN---TSLLMEVTLCVDAKARNFVSCIAR--PSSLSSCPGD-IIW 137 (139)
Q Consensus 79 ~~~i~~al~~-~g~~~p~l~C~~---~~~L~Ev~~C~~~~~~~~i~Cp~~--~~~~~~C~~~-i~~ 137 (139)
+++|++||++ ++|..|.|+|.. ..+|.||+||||+++.++|+||.+ .+..++||+. |.|
T Consensus 135 ~~~I~~Ai~~~~~g~~p~l~C~~~~~~~~L~Ev~iC~~~~~~~~i~C~~~~~~~~~~~Cp~~~i~y 200 (200)
T 1iqq_A 135 LLDIENAIRNGADNKKPKLKCQKKGTTTELVEITLCSDKSGEHFIDCPHPFEPISPHYCPTNNIKY 200 (200)
T ss_dssp HHHHHHHHHTTTTTCCCEEEEEEETTEEEEEEEEEEECTTSSSEECCSCCCCTTSTTCCCSSCEEC
T ss_pred HHHHHHHHHHhcCCCceEEEEeeCCCCeEEEEEEEEEECCCCeEEeCCCCCCCCCCCCCCccCcCC
Confidence 9999999999 833899999984 268999999999998789999873 4456789984 876
No 7
>1ioo_A SF11-RNAse; SELF-incompatibility ribonuclease, hydrolase; HET: NAG BMA MAN; 1.55A {Nicotiana alata} SCOP: d.124.1.1
Probab=100.00 E-value=7.6e-39 Score=240.32 Aligned_cols=128 Identities=22% Similarity=0.459 Sum_probs=110.5
Q ss_pred hHHHHHhccCCCCccCC---CCChhhHHHhhhccccc-CCCCChHHHHHHHHHHHHhcCHHHHHHhCCCCCCCCCCCHHH
Q 047133 6 SFAAEMNKFWPSLTRDE---NENEQFWEREWKHHGRG-QPTLPPEEYFRTAITLVKAANLEAAFRGAGINPDGDKLNPRK 81 (139)
Q Consensus 6 ~l~~~L~~~Wp~l~~~~---~~~~~fw~hEW~KHGt~-~~~~~~~~YF~~al~l~~~~~i~~~L~~~gI~P~~~~y~~~~ 81 (139)
+++++|+++||++..+. .++..||+|||+||||| ...++|.+||++|++|++++|++++|+++||+| +..|++++
T Consensus 58 ~l~~~L~~~Wp~l~~~~~~~~~~~~fW~hEw~KHGTC~~~~~~q~~YF~~a~~L~~~~n~~~~L~~~gI~P-~~~~t~~~ 136 (196)
T 1ioo_A 58 KMLNDLDKHWMQLKFEQDYGRTEQPSWKYQYIKHGSCCQKRYNQNTYFGLALRLKDKFDLLRTLQTHRIIP-GSSYTFQD 136 (196)
T ss_dssp HHHHHHHHHTCCTTSCHHHHHHHCHHHHHHHHHTGGGCTTTCCHHHHHHHHHHHHHTCCHHHHHHHTTCCT-TEEECHHH
T ss_pred HHHHHHhccCCCCCcccccccccchHHHhhCcCCcCcCCCcCCHHHHHHHHHHHHHHCCHHHHHHHCCCcc-CCCcCHHH
Confidence 79999999999995221 13478999999999995 555699999999999999999999999999999 55699999
Q ss_pred HHHHHHH-hCCCCcEEEecc----CCcEEEEEEeeecCCCceeeCCCCCCCCCCC--CCceeecC
Q 047133 82 YTRAINT-RYGTTPLYKCLN----TSLLMEVTLCVDAKARNFVSCIARPSSLSSC--PGDIIWAL 139 (139)
Q Consensus 82 i~~al~~-~g~~~p~l~C~~----~~~L~Ev~~C~~~~~~~~i~Cp~~~~~~~~C--~~~i~~p~ 139 (139)
|++||++ +| ..|.|+|.. ..+|.||++|||+++.++|+||.+ .+| +..|.||.
T Consensus 137 I~~Ai~~~~g-~~p~l~C~~~~~~~~~L~Ev~iC~~~~~~~~i~Cp~~----~~C~~~~~i~fp~ 196 (196)
T 1ioo_A 137 IFDAIKTVSQ-ENPDIKCAEVTKGTPELYEIGICFTPNADSMFRCPQS----DTCDKTAKVLFRR 196 (196)
T ss_dssp HHHHHHHHHS-SCCEEEEECSSTTCCEEEEEEEEECTTSSSEECCCCC----CCSCTTSCEEECC
T ss_pred HHHHHHHHhC-CCeEEEeeecCCCCeEEEEEEEEEeCCCCEEeCCcCC----CCCCCCCCeecCC
Confidence 9999999 98 899999953 369999999999999779999962 469 34599984
No 8
>3t0o_A Ribonuclease T2, ribonuclease 6; rnaset2, alpha/beta fold, RNA cleavage, hydrol; HET: NAG; 1.59A {Homo sapiens}
Probab=100.00 E-value=2.4e-38 Score=243.94 Aligned_cols=136 Identities=21% Similarity=0.529 Sum_probs=114.4
Q ss_pred CcchhHHHHHhccCCCCccCCCCChhhHHHhhhcccccCCC----CChHHHHHHHHHHHHhcCHHHHHHhCCCCCCCCCC
Q 047133 2 ESNKSFAAEMNKFWPSLTRDENENEQFWEREWKHHGRGQPT----LPPEEYFRTAITLVKAANLEAAFRGAGINPDGDKL 77 (139)
Q Consensus 2 ~~~~~l~~~L~~~Wp~l~~~~~~~~~fw~hEW~KHGt~~~~----~~~~~YF~~al~l~~~~~i~~~L~~~gI~P~~~~y 77 (139)
..+++|+++|+++||++..+.+++..||+|||+|||||... .+|.+||++|++|++++|+.++|+++||+|++..|
T Consensus 60 ~~i~~l~~~L~~~WPdl~~~~~~~~~fW~hEW~KHGTC~~~~~~~~~q~~YF~~a~~L~~~~n~~~~L~~~gI~P~~~~y 139 (238)
T 3t0o_A 60 EEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGTCAAQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYY 139 (238)
T ss_dssp GGGGGGHHHHHHHSCCCSSCCSSTHHHHHHHCCCCCHHHTTSGGGCSHHHHHHHHHHHHHHHCHHHHHHHTTCCCCSSCE
T ss_pred hhhhHHHHHHHhhCcccccCCCCchHHHHHhhhcCceecCCccccccHHHHHHHHHHHHHHcccHHHHHhcCccCCCCcc
Confidence 35778999999999999655567789999999999995432 38999999999999999999999999999955578
Q ss_pred CHHHHHHHHHH-hCCCCcEEEecc------CCcEEEEEEeeecCCCceeeCCCCC------------------CCCCCCC
Q 047133 78 NPRKYTRAINT-RYGTTPLYKCLN------TSLLMEVTLCVDAKARNFVSCIARP------------------SSLSSCP 132 (139)
Q Consensus 78 ~~~~i~~al~~-~g~~~p~l~C~~------~~~L~Ev~~C~~~~~~~~i~Cp~~~------------------~~~~~C~ 132 (139)
++++|++||++ +| +.|.|+|.+ .++|.||+||||+++.++|+||.++ .+...|.
T Consensus 140 t~~~I~~Ai~~~~g-~~P~l~C~~~~~~~~~~~L~EV~iC~d~~~~~~idCp~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 218 (238)
T 3t0o_A 140 QVADFKDALARVYG-VIPKIQCLPPSQDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLRVCE 218 (238)
T ss_dssp EHHHHHHHHHHHHS-SCCEEEEECCC---CCCEEEEEEEEEETTTCCEECCC--------------------CTTCEECC
T ss_pred cHHHHHHHHHHHHC-CCeEEEEecCCCCCcccEEEEEEEEeecCCCEEecCCCCCCCCccccccccccccccCCceeecC
Confidence 99999999999 99 899999975 1479999999999766999999843 1246787
Q ss_pred Cc-eeec
Q 047133 133 GD-IIWA 138 (139)
Q Consensus 133 ~~-i~~p 138 (139)
++ |+||
T Consensus 219 ~~~~~~~ 225 (238)
T 3t0o_A 219 DGPVFYP 225 (238)
T ss_dssp SSEEBCC
T ss_pred CCCccCC
Confidence 76 7775
No 9
>1bol_A Protein (ribonuclease RH); ribonucleases, hydrolase; 2.00A {Rhizopus niveus} SCOP: d.124.1.1
Probab=100.00 E-value=3.6e-38 Score=241.04 Aligned_cols=126 Identities=29% Similarity=0.520 Sum_probs=111.6
Q ss_pred hhHHHHHhccCCCCccCCCCChhhHHHhhhcccccCCC------------CChHHHHHHHHHHHHhcCHHHHHHhCCCCC
Q 047133 5 KSFAAEMNKFWPSLTRDENENEQFWEREWKHHGRGQPT------------LPPEEYFRTAITLVKAANLEAAFRGAGINP 72 (139)
Q Consensus 5 ~~l~~~L~~~Wp~l~~~~~~~~~fw~hEW~KHGt~~~~------------~~~~~YF~~al~l~~~~~i~~~L~~~gI~P 72 (139)
.+|+++|+.+||++. +++..||+|||+|||||... .++.+||++|++|++++|+.++|+++||+|
T Consensus 81 ~~l~~~L~~~WP~l~---~~~~~fW~hEW~KHGTC~~~~~~~c~~~y~~~~~~~~YF~~al~L~~~~n~~~~L~~~gI~P 157 (222)
T 1bol_A 81 SSLYNSMLTYWPSNQ---GNNNVFWSHEWSKHGTCVSTYDPDCYDNYEEGEDIVDYFQKAMDLRSQYNVYKAFSSNGITP 157 (222)
T ss_dssp HHHHHHHHHHSCCTT---SCHHHHHHHHHHHTGGGCGGGSGGGCTTCCTTHHHHHHHHHHHHHHHHSCHHHHHHTTTCCS
T ss_pred hHHHHHHhhcCCCcc---ccccHHHHhhhhcCeeeccccCccccccccccccHHHHHHHHHHHHHHcCcHHHHHHcCCCC
Confidence 578999999999993 56789999999999996421 267899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHH-hCCCCcEEEeccCCcEEEEEEeeecCC-CceeeCCCCCCCCCCCCCceeec
Q 047133 73 DGDKLNPRKYTRAINT-RYGTTPLYKCLNTSLLMEVTLCVDAKA-RNFVSCIARPSSLSSCPGDIIWA 138 (139)
Q Consensus 73 ~~~~y~~~~i~~al~~-~g~~~p~l~C~~~~~L~Ev~~C~~~~~-~~~i~Cp~~~~~~~~C~~~i~~p 138 (139)
+..|++++|++||++ +| ..|.|+|.+ ++|.||++||++++ .++++|+... ..+||++|.||
T Consensus 158 -~~~yt~~~I~~Ai~~~~g-~~p~l~C~~-~~L~Ev~ic~~~~g~~~~~~~~~~~--~~~C~~~i~~p 220 (222)
T 1bol_A 158 -GGTYTATEMQSAIESYFG-AKAKIDCSS-GTLSDVALYFYVRGRDTYVITDALS--TGSCSGDVEYP 220 (222)
T ss_dssp -SEEEEHHHHHHHHHHHHS-SCCEEEEET-TEEEEEEEEEEEETTTEEEEECCSC--CCSCCSEEEEC
T ss_pred -CCcCcHHHHHHHHHHHhC-CCeEEEECC-CEEeEEEEEEEcCCCCCeEECCCCC--CCCCCCCeEeC
Confidence 445999999999999 98 899999997 89999999999984 5899998752 46799999997
No 10
>3d3z_A Actibind; RNAse, hydrolase; HET: NAG D3Z; 1.70A {Aspergillus niger}
Probab=100.00 E-value=2e-37 Score=240.24 Aligned_cols=131 Identities=24% Similarity=0.505 Sum_probs=112.1
Q ss_pred chhHHHHHhccCCCCccCCCCChhhHHHhhhcccccCCC------------CChHHHHHHHHHHHHhcCHHHHHHhCCCC
Q 047133 4 NKSFAAEMNKFWPSLTRDENENEQFWEREWKHHGRGQPT------------LPPEEYFRTAITLVKAANLEAAFRGAGIN 71 (139)
Q Consensus 4 ~~~l~~~L~~~Wp~l~~~~~~~~~fw~hEW~KHGt~~~~------------~~~~~YF~~al~l~~~~~i~~~L~~~gI~ 71 (139)
..+|++.|+++||+|. ...++..||+|||+|||||... .++.+||++|++|++++|+.++|+++||+
T Consensus 84 ~~~ll~~L~~~Wp~l~-~~~~~~~fW~hEW~KHGTC~~~~~~~C~~~y~~~~~~~~YF~~al~L~~k~n~~~~L~~~gI~ 162 (247)
T 3d3z_A 84 RTELLSYMKEYWPDYE-GADEDESFWEHEWNKHGTCINTIEPSCYTDYYAQEEVGDFFQQVVDLFKTLDSYTALSDAGIT 162 (247)
T ss_dssp CHHHHHHHHHHSCCTT-CGGGHHHHHHHHHHHTGGGCGGGSGGGBSSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHTTCC
T ss_pred hHHHHHHHHhhCcccc-CCCCccHHHHHhhhcCeeecccCCcccccccccccCHHHHHHHHHHHHHhcCcHHHHHHCCcc
Confidence 3578999999999994 2226789999999999996421 36789999999999999999999999999
Q ss_pred C-CCCCCCHHHHHHHHHH-hCCCCcEEEeccCCcEEEEEEeeecCCC----ceeeCCCCCCCCCCCCCc-eeec
Q 047133 72 P-DGDKLNPRKYTRAINT-RYGTTPLYKCLNTSLLMEVTLCVDAKAR----NFVSCIARPSSLSSCPGD-IIWA 138 (139)
Q Consensus 72 P-~~~~y~~~~i~~al~~-~g~~~p~l~C~~~~~L~Ev~~C~~~~~~----~~i~Cp~~~~~~~~C~~~-i~~p 138 (139)
| .++.|++++|++||++ ++|..|.|+|.+ ++|.||++|||+++. ++++|+... ..+||++ |.||
T Consensus 163 P~~~~tyt~~~I~~Ai~~~~~g~~p~l~C~~-~~L~Ev~iC~~~~~~~~~~~~~~~~~~~--~~~C~~~~I~~p 233 (247)
T 3d3z_A 163 PSEDATYKLSDIEDALAAIHDGYPPYVGCED-GALSQLYYYFNVKGSAIGGTYVASERLE--DSNCKDSGIKYP 233 (247)
T ss_dssp CCSSCCBCHHHHHHHHHTTTTTCCCEEEEET-TEEEEEEEEEEEESCTTTSEEEECCCSS--CBSSCSSCBBCC
T ss_pred CCCCceECHHHHHHHHHHhcCCCCeEEEeCC-CEEEEEEEEEecCCCccCCceeECCCCC--CCCCCCCceEeC
Confidence 9 4578999999999999 833899999997 999999999999872 588888643 4679987 9987
No 11
>2pqx_A Ribonuclease I; hydrolase; HET: MES; 1.42A {Escherichia coli} PDB: 2ea1_A* 2pqy_A* 2z70_A*
Probab=99.97 E-value=3.5e-32 Score=210.43 Aligned_cols=120 Identities=18% Similarity=0.308 Sum_probs=102.3
Q ss_pred hhHHHHHhccCCCCccCCCCChhhHHHhhhcccccCCCCChHHHHHHHHHHHHhcCHH---HHHHhCCCCCCCCCCCHHH
Q 047133 5 KSFAAEMNKFWPSLTRDENENEQFWEREWKHHGRGQPTLPPEEYFRTAITLVKAANLE---AAFRGAGINPDGDKLNPRK 81 (139)
Q Consensus 5 ~~l~~~L~~~Wp~l~~~~~~~~~fw~hEW~KHGt~~~~~~~~~YF~~al~l~~~~~i~---~~L~~~gI~P~~~~y~~~~ 81 (139)
.+++++|+.+||++.. +..||+|||+|||||.. ++|.+||++|++|++++|++ ++|+. .| +++|++++
T Consensus 106 ~~l~~~L~~~WP~~~~----~~~fw~hEW~KHGTC~~-~~~~~YF~~a~~l~~~~n~~~~~~~l~~---~~-g~~~t~~~ 176 (245)
T 2pqx_A 106 LETAAKLSEVMPGAGG----RSCLERYEYAKHGACFG-FDPDAYFGTMVRLNQEIKESEAGKFLAD---NY-GKTVSRRD 176 (245)
T ss_dssp HHHHHHHHHHCTTSST----TTCHHHHHHHHHTGGGT-CCHHHHHHHHHHHHHHHHHSHHHHHHHH---TT-TSEEEHHH
T ss_pred HHHHHHHHHhCCCCCC----cchHHHHHhhhCCeecC-CCHHHHHHHHHHHHHHhccchHHHHhhc---CC-CceEcHHH
Confidence 5789999999999942 26799999999999654 89999999999999999765 56877 34 78899999
Q ss_pred HHHHHHH-hCCCCc----EEEecc-CCcEEEEEEeeecC-------CCceeeCCCCCCCCCCCCCceeec
Q 047133 82 YTRAINT-RYGTTP----LYKCLN-TSLLMEVTLCVDAK-------ARNFVSCIARPSSLSSCPGDIIWA 138 (139)
Q Consensus 82 i~~al~~-~g~~~p----~l~C~~-~~~L~Ev~~C~~~~-------~~~~i~Cp~~~~~~~~C~~~i~~p 138 (139)
|++||++ +| ..| .|+|.+ ..+|.||+||||++ +.++|+||. ..+||++|+||
T Consensus 177 I~~Ai~~~~g-~~p~~~v~l~C~~~~~~L~Ev~iC~~~~~~~~~~~~~~~i~cp~----~~~C~~~~~~~ 241 (245)
T 2pqx_A 177 FDAAFAKSWG-KENVKAVKLTCQGNPAYLTEIQISIKADAINAPLSANSFLPQPH----PGNCGKTFVID 241 (245)
T ss_dssp HHHHHHHHHC-GGGGGGEEEEEETTTTEEEEEEEEEEGGGTTSCCCTTSBCCCSC----CBSCCSEEECC
T ss_pred HHHHHHHHhC-CCCCcceEEEECCCCCEEEEEEEEEcccccCCCccccccccCCC----CCCCCCCeEeC
Confidence 9999999 98 665 999987 24999999999999 568999985 24699998886
No 12
>4dvk_A E(RNS) glycoprotein; T2 ribonuclease, virus envelope glycoprotein, viral protein; HET: NAG BMA MAN; 2.21A {Bovine viral diarrhea virus} PDB: 4dw5_A* 4dvl_A* 4dvn_A* 4dw3_A* 4dw4_A* 4dwc_A* 4dwa_A* 4dw7_A*
Probab=99.17 E-value=1.9e-12 Score=93.78 Aligned_cols=45 Identities=16% Similarity=0.184 Sum_probs=35.2
Q ss_pred cchhHHHHHhccCCCCccCCCCChhhHHHhhhcccccCCCCChHHHHHHHHHH
Q 047133 3 SNKSFAAEMNKFWPSLTRDENENEQFWEREWKHHGRGQPTLPPEEYFRTAITL 55 (139)
Q Consensus 3 ~~~~l~~~L~~~Wp~l~~~~~~~~~fw~hEW~KHGt~~~~~~~~~YF~~al~l 55 (139)
.+.+|++.|++ |+|.. + .||+|||+|||||. .++|.+||.++...
T Consensus 53 ~I~dLl~~Ldk--PdL~~---~--~FWeHEWnKHGTCS-~ynQe~YFdL~~~a 97 (165)
T 4dvk_A 53 AIHGMMDASEK--TNYTC---C--RLQRHEWNKHGWCN-WYNIEPWILLMNKT 97 (165)
T ss_dssp TSTTCCCSCGG--GTSCS---S--HHHHHHHHHHTHHH-HSSHHHHHHHHHHH
T ss_pred hHHHHHHhhcC--CCCCc---h--HHHHHHHHcCCccC-CCCHHHHHHHHHHH
Confidence 35567788888 99942 2 29999999999943 28999999988765
No 13
>2ciw_A Chloroperoxidase; oxidoreductase, heme, iron, chloride, manganese, pyrrolidone carboxylic acid, glycoprotein, metal-binding; HET: NAG BMA MAN HEM; 1.15A {Caldariomyces fumago} SCOP: a.39.3.1 a.39.3.1 PDB: 1cpo_A* 2civ_A* 2cix_A* 2ciy_A* 2ciz_A* 2cj0_A* 2cj1_A* 2cj2_A* 2cpo_A* 2j18_A* 2j19_A* 2j5m_A*
Probab=75.37 E-value=1.9 Score=33.80 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=28.6
Q ss_pred HHHHHHhCCCCC-CCCCCCHHHHHHHHHH-hCCCCc
Q 047133 61 LEAAFRGAGINP-DGDKLNPRKYTRAINT-RYGTTP 94 (139)
Q Consensus 61 i~~~L~~~gI~P-~~~~y~~~~i~~al~~-~g~~~p 94 (139)
-+.+|+++|+.| +|...+..++..|+.+ +| ..+
T Consensus 32 gLNaLANHGyLpR~G~nit~~~l~~al~~~~n-~~~ 66 (299)
T 2ciw_A 32 ALNALANHGYIPHDGRAISRETLQNAFLNHMG-IAN 66 (299)
T ss_dssp HHHHHHHTTSSCTTCEEECHHHHHHHHHHHHC-BCH
T ss_pred HHHHHHhcCCcCCCCCccCHHHHHHHHHHhcC-CCH
Confidence 357899999999 8888999999999999 87 654
No 14
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A
Probab=28.91 E-value=39 Score=25.56 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=24.2
Q ss_pred CHHHHHHhCCCCC-CCCCCCHHHHHHHHHH
Q 047133 60 NLEAAFRGAGINP-DGDKLNPRKYTRAINT 88 (139)
Q Consensus 60 ~i~~~L~~~gI~P-~~~~y~~~~i~~al~~ 88 (139)
+|..+++..-|-| .+..|++..|+.|++.
T Consensus 112 ~Ii~~Ia~~~VnP~T~~P~p~~~IE~Am~e 141 (252)
T 2kdo_A 112 DIATIVADKCVNPETKRPYTVILIERAMKD 141 (252)
T ss_dssp HHHHHHHTTEECCTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Confidence 4667788888889 6677999999999998
No 15
>3oqg_A HPY188I; endonuclease-DNA complex, restriction enzyme, HPY188I, inter GIY-YIG nuclease, catalytic mechanism; HET: DNA; 1.75A {Helicobacter pylori} PDB: 3or3_A
Probab=28.35 E-value=32 Score=23.69 Aligned_cols=19 Identities=21% Similarity=0.496 Sum_probs=15.3
Q ss_pred HHhhhcccccCCCCChHHHHHHH
Q 047133 30 EREWKHHGRGQPTLPPEEYFRTA 52 (139)
Q Consensus 30 ~hEW~KHGt~~~~~~~~~YF~~a 52 (139)
+-||+|.|||+ ...||-..
T Consensus 102 k~~yrkngtc~----ttnyfvlq 120 (180)
T 3oqg_A 102 KVEYRKNGTCS----TTNYFVLQ 120 (180)
T ss_dssp CHHHHHHTCSC----HHHHHHHH
T ss_pred ceeeecCCccc----cchHHHHH
Confidence 46999999998 66899654
No 16
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=25.34 E-value=37 Score=25.74 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=24.9
Q ss_pred cCHHHHHHhCCCCC-CCCCCCHHHHHHHHHH
Q 047133 59 ANLEAAFRGAGINP-DGDKLNPRKYTRAINT 88 (139)
Q Consensus 59 ~~i~~~L~~~gI~P-~~~~y~~~~i~~al~~ 88 (139)
-+|..++++.-|-| .+..|++..|+.|++.
T Consensus 122 r~Ii~~Ia~~~VnP~T~~P~p~~~IE~Am~e 152 (252)
T 2wbm_A 122 LKIINKIAREAINPQNGLPHPPKRIEKAMEE 152 (252)
T ss_dssp HHHHHHHHHHEECTTTCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHh
Confidence 35777888888889 6677999999999998
No 17
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=22.18 E-value=94 Score=19.71 Aligned_cols=36 Identities=8% Similarity=0.085 Sum_probs=28.6
Q ss_pred HHHHHhcCHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 047133 53 ITLVKAANLEAAFRGAGINPDGDKLNPRKYTRAINT 88 (139)
Q Consensus 53 l~l~~~~~i~~~L~~~gI~P~~~~y~~~~i~~al~~ 88 (139)
+.+.+++=++..++.+|+.++.-..+-+.|...|..
T Consensus 9 ~~IAk~~LiPkql~~~GL~~~~~~i~d~al~~iI~~ 44 (94)
T 1qzm_A 9 LNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRY 44 (94)
T ss_dssp HHHHHHTHHHHHHHHTTCCTTTEEECHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHhCCChhhceECHHHHHHHHHH
Confidence 456677888999999999885566788888877777
No 18
>4gdk_C APG16-like 1, autophagy-related protein 16-1; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_C
Probab=20.33 E-value=20 Score=19.04 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=18.7
Q ss_pred hhhcccccC-C--CCChHHHHHHHHHHHHhc
Q 047133 32 EWKHHGRGQ-P--TLPPEEYFRTAITLVKAA 59 (139)
Q Consensus 32 EW~KHGt~~-~--~~~~~~YF~~al~l~~~~ 59 (139)
-|++|+... . .-.|.+.|...+..+.++
T Consensus 5 ~Wrr~I~~~Lr~RdR~q~~~F~diI~~yNkL 35 (36)
T 4gdk_C 5 RWKRHISEQLRRRDRLQRQAFEEIILQYNKL 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 377788732 1 026788898888877664
No 19
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=20.14 E-value=43 Score=25.16 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=24.5
Q ss_pred cCHHHHHHhCCCCC-CCCCCCHHHHHHHHHH
Q 047133 59 ANLEAAFRGAGINP-DGDKLNPRKYTRAINT 88 (139)
Q Consensus 59 ~~i~~~L~~~gI~P-~~~~y~~~~i~~al~~ 88 (139)
-+|..+++..-|-| .+..|++..|+.|++.
T Consensus 107 r~Ii~~Ia~~~VnP~T~~P~p~~~IE~Am~e 137 (240)
T 1t95_A 107 KQIINFISRNTIDPRTNAPHPPSRIERALEE 137 (240)
T ss_dssp HHHHHHHHHHEEBTTTTBCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Confidence 35677788887889 6677999999999998
Done!