Query 047135
Match_columns 134
No_of_seqs 160 out of 433
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 13:50:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047135.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047135hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_N 60S ribosomal protein L 100.0 7.2E-61 2.5E-65 360.0 13.7 134 1-134 1-134 (134)
2 4a18_F RPL14; ribosome, eukary 100.0 3.1E-59 1.1E-63 347.9 11.4 123 1-123 1-124 (126)
3 3izc_N 60S ribosomal protein R 100.0 8.5E-58 2.9E-62 344.7 13.3 127 1-127 9-137 (138)
4 2joy_A 50S ribosomal protein L 100.0 1.2E-28 4.1E-33 175.2 9.4 83 6-88 3-89 (96)
5 3j21_5 50S ribosomal protein L 99.9 1.5E-28 5E-33 171.2 6.3 76 6-81 3-81 (83)
6 4a18_N RPL27, ribosomal protei 99.7 8.3E-18 2.8E-22 127.3 5.7 59 5-63 3-92 (144)
7 3iz5_G 60S ribosomal protein L 99.3 7.5E-13 2.6E-17 105.9 4.2 58 6-63 74-135 (219)
8 3izc_a 60S ribosomal protein R 99.3 1.5E-14 5.2E-19 108.6 -7.2 59 5-63 3-90 (136)
9 4a18_E RPL6; ribosome, eukaryo 99.3 6.4E-12 2.2E-16 98.8 7.1 60 4-63 42-105 (191)
10 3iz5_a 60S ribosomal protein L 99.3 1.6E-14 5.3E-19 108.5 -7.7 59 5-63 3-90 (136)
11 3izc_G 60S ribosomal protein R 98.8 3.1E-09 1.1E-13 82.6 4.2 58 6-63 33-94 (176)
12 3r8s_U 50S ribosomal protein L 95.7 0.028 9.5E-07 39.9 6.4 35 7-41 4-38 (102)
13 3j21_U 50S ribosomal protein L 95.6 0.022 7.5E-07 41.6 5.6 52 7-58 46-105 (121)
14 2zjr_R 50S ribosomal protein L 95.0 0.028 9.7E-07 40.5 4.4 35 7-41 16-51 (115)
15 1vq8_T 50S ribosomal protein L 94.7 0.044 1.5E-06 40.0 4.8 52 7-58 43-102 (120)
16 2zkr_t 60S ribosomal protein L 94.4 0.045 1.6E-06 41.1 4.4 35 7-41 49-85 (145)
17 2ftc_N Mitochondrial ribosomal 93.9 0.082 2.8E-06 37.0 4.6 32 10-41 1-33 (96)
18 3v2d_Y 50S ribosomal protein L 93.9 0.089 3E-06 37.7 4.9 38 4-41 4-42 (110)
19 1nz9_A Transcription antitermi 93.6 0.12 4.1E-06 32.1 4.6 33 6-38 4-37 (58)
20 3u5e_Y L33, YL33, 60S ribosoma 93.2 0.17 5.8E-06 37.2 5.6 52 7-58 50-109 (127)
21 2e70_A Transcription elongatio 93.2 0.13 4.6E-06 34.3 4.5 39 3-41 14-53 (71)
22 3iz5_Y 60S ribosomal protein L 93.1 0.16 5.5E-06 38.3 5.5 53 7-59 49-109 (150)
23 2do3_A Transcription elongatio 92.9 0.17 5.7E-06 33.7 4.7 35 3-38 14-48 (69)
24 4a17_S RPL26, 60S ribosomal pr 91.8 0.28 9.6E-06 36.4 5.3 52 7-58 49-108 (135)
25 2e6z_A Transcription elongatio 90.5 0.23 7.7E-06 31.4 3.2 32 6-38 7-38 (59)
26 3bbo_W Ribosomal protein L24; 89.1 0.057 1.9E-06 42.3 -0.7 35 7-41 69-104 (191)
27 3p8b_B Transcription antitermi 88.8 1.2 4.2E-05 32.2 6.5 51 6-56 91-145 (152)
28 2jvv_A Transcription antitermi 88.1 0.7 2.4E-05 34.3 4.8 33 6-38 127-160 (181)
29 2ckk_A KIN17; beta barrel, rib 82.6 2.7 9.2E-05 30.3 5.5 35 7-41 71-109 (127)
30 2xzm_W 40S ribosomal protein S 75.2 4.4 0.00015 32.9 5.1 34 8-41 178-216 (260)
31 2xhc_A Transcription antitermi 73.8 4.1 0.00014 34.0 4.8 33 6-38 298-331 (352)
32 3kbg_A 30S ribosomal protein S 67.8 4.3 0.00015 32.0 3.4 26 7-32 139-164 (213)
33 3j20_E 30S ribosomal protein S 66.4 4.4 0.00015 32.5 3.3 32 7-38 179-215 (243)
34 3iz6_D 40S ribosomal protein S 64.9 5.2 0.00018 32.5 3.5 32 7-38 175-210 (265)
35 3oym_A PFV integrase, P42IN; p 59.7 24 0.00081 27.9 6.5 52 6-59 319-378 (395)
36 3sd4_A PHD finger protein 20; 48.6 21 0.00073 22.5 3.7 35 5-41 11-50 (69)
37 4dt4_A FKBP-type 16 kDa peptid 47.2 23 0.00077 26.4 4.2 32 7-41 113-146 (169)
38 4a1x_C CP5-46-A peptide; hydro 47.1 8.7 0.0003 20.6 1.3 14 8-21 2-15 (26)
39 2kr7_A FKBP-type peptidyl-prol 46.4 16 0.00056 26.2 3.2 33 6-41 93-127 (151)
40 1m1h_A Transcription antitermi 46.0 4.3 0.00015 32.3 0.0 33 6-38 194-227 (248)
41 3u5c_E RP5, S7, YS6, 40S ribos 44.7 5.4 0.00018 32.4 0.4 32 7-38 175-210 (261)
42 2k3a_A CHAP domain protein; mo 43.9 29 0.001 25.7 4.3 33 5-38 92-124 (155)
43 3pr9_A FKBP-type peptidyl-prol 43.5 29 0.001 25.3 4.3 29 7-41 103-131 (157)
44 1ix5_A FKBP; ppiase, isomerase 43.4 26 0.00088 25.2 3.9 29 7-41 104-132 (151)
45 2wfw_A ARC; ATP-binding protei 37.9 44 0.0015 25.0 4.5 35 7-41 44-88 (153)
46 2k8i_A SLYD, peptidyl-prolyl C 37.3 33 0.0011 25.4 3.7 40 6-48 89-130 (171)
47 3cgm_A SLYD, peptidyl-prolyl C 32.1 41 0.0014 24.4 3.5 38 6-46 84-124 (158)
48 3prb_A FKBP-type peptidyl-prol 31.8 53 0.0018 25.6 4.3 59 7-77 103-162 (231)
49 4a4z_A Antiviral helicase SKI2 31.8 24 0.00082 32.7 2.6 29 4-32 606-634 (997)
50 2rde_A Uncharacterized protein 31.6 68 0.0023 24.1 4.8 37 5-41 33-73 (251)
51 2ckk_A KIN17; beta barrel, rib 31.1 77 0.0026 22.5 4.7 32 6-38 14-50 (127)
52 3h43_A Proteasome-activating n 30.5 39 0.0013 22.4 2.9 15 24-38 21-35 (85)
53 2d7e_A Primosomal protein N'; 26.5 50 0.0017 22.1 2.9 26 7-33 26-52 (105)
54 3cp0_A Membrane protein implic 25.8 59 0.002 20.7 3.0 39 3-41 7-47 (82)
55 3l9o_A ATP-dependent RNA helic 25.0 33 0.0011 32.3 2.2 27 5-31 707-734 (1108)
56 2wg5_A General control protein 24.3 53 0.0018 22.6 2.7 15 24-38 40-54 (109)
57 2jrn_A CHAP domain protein; mo 23.8 89 0.0031 23.5 4.1 33 5-38 92-124 (163)
58 2xgj_A ATP-dependent RNA helic 22.2 40 0.0014 31.4 2.2 26 5-31 609-636 (1010)
59 2qqr_A JMJC domain-containing 21.7 73 0.0025 22.7 3.1 35 5-41 4-43 (118)
60 2kfw_A FKBP-type peptidyl-prol 21.6 33 0.0011 26.0 1.3 40 6-48 89-130 (196)
61 2wnw_A Activated by transcript 20.8 71 0.0024 26.8 3.3 17 3-19 373-389 (447)
62 2eqm_A PHD finger protein 20-l 20.3 1.5E+02 0.0051 19.6 4.3 35 5-41 18-57 (88)
63 1y71_A Kinase-associated prote 20.1 2.1E+02 0.0073 20.8 5.3 47 47-95 73-119 (130)
No 1
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=100.00 E-value=7.2e-61 Score=359.97 Aligned_cols=134 Identities=87% Similarity=1.278 Sum_probs=132.4
Q ss_pred CCcccceecCeEEEEccccCCCcEEEEEEeecCCeEEEeCCCCcceeeeccCeeeeceEEecCCCCChHHHHHHHHHhch
Q 047135 1 MPFKRYVEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAPDMVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADV 80 (134)
Q Consensus 1 m~f~r~veiGrVV~i~~G~~~Gk~~VIVdiiD~~rvLVDGp~v~Rk~~n~khl~lT~~~i~i~~~~~~~~v~ka~e~~~v 80 (134)
|+|+|||||||||++++|||+|++||||||+|+||||||||.|+||.+|++||+||+++++||+++++++|+++|++++|
T Consensus 1 ~~f~rfvevGRVV~i~~Gr~aGk~avIV~iiD~~rvLVdG~~v~Rk~~n~khL~lT~~~v~i~r~a~~~~v~ka~~~a~i 80 (134)
T 3iz5_N 1 MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPDMVRCQINFKRLSLTDIKIDIKRVPKKTTLIKAMEEADV 80 (134)
T ss_dssp CCCCCSCCSSEEEECSCCSSSCCEEEEEEECSSSEEEEEETTEEEEEEECTTSEEEEEECCCCSCCCHHHHHHHHHHHCT
T ss_pred CCcccccccCeEEEEeeCCCCCCEEEEEEEcCCCeEEEeCCCccceeechhHeEEeCEEEeccCCCCcHHHHHHHHHcCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhchhHhhHHHHHHHhcCCChhhHHHHHHHHHHhhHHHHHHHHHHhhhcC
Q 047135 81 KNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKKENAA 134 (134)
Q Consensus 81 ~~kw~~s~waKk~~~~~~r~~ltDFdRFk~~~~kk~r~~~~~~~~~k~~~~~~~ 134 (134)
.+||++|+|||+++++++|++||||||||||++|++||+++++++++|+++++|
T Consensus 81 ~~kw~~s~wakk~~~~~~Ra~ltDFdRFkvm~akk~r~~~v~~~~~k~kk~~~~ 134 (134)
T 3iz5_N 81 KNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKKTAAA 134 (134)
T ss_dssp HHHHHHHSSSCCHHHHHHHHSCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999998875
No 2
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=100.00 E-value=3.1e-59 Score=347.94 Aligned_cols=123 Identities=36% Similarity=0.664 Sum_probs=120.5
Q ss_pred CCcccceecCeEEEEccccCCCcEEEEEEeecCCeEEEeCCCCcceeeeccCeeeeceEEe-cCCCCChHHHHHHHHHhc
Q 047135 1 MPFKRYVEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAPDMVRGQMNFKRLSLTDIKID-IPRVPKKKTLIDAMEKAD 79 (134)
Q Consensus 1 m~f~r~veiGrVV~i~~G~~~Gk~~VIVdiiD~~rvLVDGp~v~Rk~~n~khl~lT~~~i~-i~~~~~~~~v~ka~e~~~ 79 (134)
|+|+|||||||||++++||++||+||||||||+||||||||.|+||.+|++||+||+++++ ||+++++++|+++|++++
T Consensus 1 ~~f~rfvevGRVv~i~~G~~aGklavIVdIID~nrvLVdGp~V~Rq~~n~k~l~LT~~~v~~i~r~a~t~~v~ka~~~a~ 80 (126)
T 4a18_F 1 MVFNKFVQVGRVVYINYGADKGKLAVIVNIINQNRILIDGEHIVRQVIPIRRVHLTKFQIDNVELNQRTVLLKKKIAKFD 80 (126)
T ss_dssp -CCCCEEETTEEEEECSSTTTTEEEEEEEEETTTEEEEEETTEEEEEEEGGGEEEEEEECTTCCTTCCHHHHHHHHHHHT
T ss_pred CCcccceecceEEEEccCCccCCEEEEEEEecCCeEEEeCCCcccceeeccceEEcceeccccCCCCCcHHHHHHHHHcC
Confidence 8999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred hHHHhhhchhHhhHHHHHHHhcCCChhhHHHHHHHHHHhhHHHH
Q 047135 80 VKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQ 123 (134)
Q Consensus 80 v~~kw~~s~waKk~~~~~~r~~ltDFdRFk~~~~kk~r~~~~~~ 123 (134)
|.+||++|+||||++++++|++||||||||||++|++||+++++
T Consensus 81 i~~kw~~s~wakK~~~~~~Ra~ltDFdRFkvm~akk~r~~~v~k 124 (126)
T 4a18_F 81 LTKKYAETSFAKKQAIKTKRANLGDFDRFRVMVLKKKLARTSAK 124 (126)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998864
No 3
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=100.00 E-value=8.5e-58 Score=344.68 Aligned_cols=127 Identities=35% Similarity=0.654 Sum_probs=125.5
Q ss_pred CCcccceecCeEEEEccccCCCcEEEEEEeecCCeEEEeCC--CCcceeeeccCeeeeceEEecCCCCChHHHHHHHHHh
Q 047135 1 MPFKRYVEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAP--DMVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKA 78 (134)
Q Consensus 1 m~f~r~veiGrVV~i~~G~~~Gk~~VIVdiiD~~rvLVDGp--~v~Rk~~n~khl~lT~~~i~i~~~~~~~~v~ka~e~~ 78 (134)
|+|+||+||||||++++|||+||+||||||+|+|||||||| +|+||.+|++||+||+++++||+++++++|+++|+++
T Consensus 9 ~~f~rfve~GrVV~i~~Gr~aGk~avIV~iiD~~rVLVDGp~~gV~R~~~n~khL~lT~~~v~i~r~a~t~~v~ka~~~a 88 (138)
T 3izc_N 9 ASNWRLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAA 88 (138)
T ss_dssp CCCCCCSSTTEEEECCSCSSSCCEEEEEEECSSSEEEEECSSSSCCCEEEECSSSEEEEEECCCCSCCCHHHHHHHHHHH
T ss_pred hhhhhhcccCeEEEEeeCCCCCCEEEEEEEecCCEEEEEcCCCCcccceechhHeEEecEEEEccCCCCcHHHHHHHHHc
Confidence 79999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred chHHHhhhchhHhhHHHHHHHhcCCChhhHHHHHHHHHHhhHHHHHHHH
Q 047135 79 DVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAK 127 (134)
Q Consensus 79 ~v~~kw~~s~waKk~~~~~~r~~ltDFdRFk~~~~kk~r~~~~~~~~~k 127 (134)
+|.+||++|+||||++++++|++||||||||||++|++||++++++++|
T Consensus 89 ~i~~kw~~s~wakk~~~~~~Ra~ltDFdRFkvm~akk~r~~~v~~~~ak 137 (138)
T 3izc_N 89 AVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAK 137 (138)
T ss_dssp CSHHHHHHHSSSCCHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHhHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999976
No 4
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=99.95 E-value=1.2e-28 Score=175.22 Aligned_cols=83 Identities=30% Similarity=0.486 Sum_probs=80.4
Q ss_pred ceecCeEEEEccccCCCcEEEEEEeecCCeEEEeCC----CCcceeeeccCeeeeceEEecCCCCChHHHHHHHHHhchH
Q 047135 6 YVEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAP----DMVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVK 81 (134)
Q Consensus 6 ~veiGrVV~i~~G~~~Gk~~VIVdiiD~~rvLVDGp----~v~Rk~~n~khl~lT~~~i~i~~~~~~~~v~ka~e~~~v~ 81 (134)
|+|+||||++++|||+||+||||+++|++||||||| .++||++|++||+||++++++++++++++|+++|+++++.
T Consensus 3 ~v~~GrVv~~~~Gr~~Gk~~VIv~~iD~~~vLV~gp~~~~~~~rk~~n~khl~~T~~~vdi~~~~~~~~vrkal~~~~i~ 82 (96)
T 2joy_A 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQKGASDEEVKKKLEESNLT 82 (96)
T ss_dssp SSSTTEEEECSSSSTTCCEEEEEEECSSSCEEEECCTTTTCCCCEEESCSSCEEEEEECCCCSSCCHHHHHHHHHHTTCH
T ss_pred ccccCEEEEEeecCCCCCEEEEEEEeCCCEEEEECCcccCCcCCEEEchHHEEEeeEEEeCCCCCChHHHHHHHHHcchH
Confidence 799999999999999999999999999999999999 5899999999999999999999999999999999999999
Q ss_pred HHhhhch
Q 047135 82 NKWESSS 88 (134)
Q Consensus 82 ~kw~~s~ 88 (134)
++|+++-
T Consensus 83 ~k~~~~~ 89 (96)
T 2joy_A 83 EYMKEKI 89 (96)
T ss_dssp HHHHCCC
T ss_pred HHHhhhc
Confidence 9999874
No 5
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.95 E-value=1.5e-28 Score=171.16 Aligned_cols=76 Identities=37% Similarity=0.594 Sum_probs=73.9
Q ss_pred ceecCeEEEEccccCCCcEEEEEEeecCCeEEEeCC---CCcceeeeccCeeeeceEEecCCCCChHHHHHHHHHhchH
Q 047135 6 YVEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAP---DMVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVK 81 (134)
Q Consensus 6 ~veiGrVV~i~~G~~~Gk~~VIVdiiD~~rvLVDGp---~v~Rk~~n~khl~lT~~~i~i~~~~~~~~v~ka~e~~~v~ 81 (134)
|+|+||||++++|||+|++||||+++|++||||||| +|+||++|++||+||++++++++++++++|+++|+++++.
T Consensus 3 ~~~~Grvv~~~~Gr~~Gk~~vIv~iiD~~~vlV~g~~~~~v~rk~kn~khl~lt~~~i~~~~~~~~~~vrkal~~~~i~ 81 (83)
T 3j21_5 3 AIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGAGLNKVKRRRMNIKHIEPLPQKIDIPRGASDEEVRAALEKAGIS 81 (83)
T ss_dssp CCCTTEEEECSSSSSSCCCEEEEEECSSSCEEEECCTTTTCCCEEESCSSCEEEEEECCCCSSCCTTTSHHHHHHHTCS
T ss_pred ccccCEEEEEeecCCCCCEEEEEEEcCCCEEEEECCccCccCCeEechHHEEEeeEEEECCCCCChHHHHHHHHHccCc
Confidence 899999999999999999999999999999999998 6999999999999999999999999999999999999875
No 6
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=99.71 E-value=8.3e-18 Score=127.35 Aligned_cols=59 Identities=24% Similarity=0.407 Sum_probs=54.3
Q ss_pred cceecCeEEEEccccCCCcEEEEEEeecC-------CeEEEeC----C-C----------Cccee-------eeccCeee
Q 047135 5 RYVEIGRVALVNYGKEYGRLVVIVDVLDQ-------NRALVDA----P-D----------MVRGQ-------MNFKRLSL 55 (134)
Q Consensus 5 r~veiGrVV~i~~G~~~Gk~~VIVdiiD~-------~rvLVDG----p-~----------v~Rk~-------~n~khl~l 55 (134)
+|++||+||++++||++||.||||+++|+ +++|||| | + ++|+. +|++||+|
T Consensus 3 kf~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaGIdryP~kvt~~m~kkki~kRskiK~FvK~vN~~Hl~p 82 (144)
T 4a18_N 3 KFLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSKKIQKRTSVKPFIKYVNLNHIMP 82 (144)
T ss_dssp CCCCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEEEEECCCCCCSSCCHHHHHHTTCCEEEEEEEEGGGEEE
T ss_pred ccccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEecccCCchhccccchheeccccccceeEEEEeeeeEEE
Confidence 79999999999999999999999999999 8999999 8 3 44654 99999999
Q ss_pred eceEE--ecC
Q 047135 56 TDIKI--DIP 63 (134)
Q Consensus 56 T~~~i--~i~ 63 (134)
|++.+ +||
T Consensus 83 Try~v~~di~ 92 (144)
T 4a18_N 83 TRYSVKELCD 92 (144)
T ss_dssp EEEECSTTCC
T ss_pred eeEEeeccCc
Confidence 99999 776
No 7
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_G
Probab=99.32 E-value=7.5e-13 Score=105.92 Aligned_cols=58 Identities=24% Similarity=0.353 Sum_probs=55.8
Q ss_pred ceecCeEEEEccccCCCcEEEEEEeecCCeEEEeCC----CCcceeeeccCeeeeceEEecC
Q 047135 6 YVEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAP----DMVRGQMNFKRLSLTDIKIDIP 63 (134)
Q Consensus 6 ~veiGrVV~i~~G~~~Gk~~VIVdiiD~~rvLVDGp----~v~Rk~~n~khl~lT~~~i~i~ 63 (134)
-++||+||++.+|+++||.||+++++|++.+||+|| +|+++++|.+|+.+|+..|+|+
T Consensus 74 si~pGtVlIil~Gr~~GKrvVfLkqL~sgllLVtGP~~lNgVplrR~~qk~viaTstkIdIs 135 (219)
T 3iz5_G 74 TITPGTVLILLAGRYMGKRVVFLKQLQSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDIS 135 (219)
T ss_dssp HCSCCSCEECSSSSSSCCEECEEEESSSSSEEECCCCSSSCCCCEEESSSSCEECSCCCSCS
T ss_pred cccCCCEEEEeccccCCcEEEEEEecCCCeEEEcCCccccCCccEEechhhEEecceEeecC
Confidence 478999999999999999999999999999999999 7999999999999999999877
No 8
>3izc_a 60S ribosomal protein RPL27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_a 3u5e_Z 3u5i_Z 4b6a_Z
Probab=99.28 E-value=1.5e-14 Score=108.56 Aligned_cols=59 Identities=34% Similarity=0.573 Sum_probs=50.8
Q ss_pred cceecCeEEEEccccCCCcEEEEEEeecCC-------eEEEeC----C-CCc----------c-------eeeeccCeee
Q 047135 5 RYVEIGRVALVNYGKEYGRLVVIVDVLDQN-------RALVDA----P-DMV----------R-------GQMNFKRLSL 55 (134)
Q Consensus 5 r~veiGrVV~i~~G~~~Gk~~VIVdiiD~~-------rvLVDG----p-~v~----------R-------k~~n~khl~l 55 (134)
+|++||+||++++|+++|+.||||+.+|++ ++||.| | +|. | +.+|++||+|
T Consensus 3 Kf~kpGkVvivl~GryaGkKaVivk~~d~gt~d~py~halVaGIdryP~kvt~~Mgkkki~KrskiK~FvKv~NynHlmP 82 (136)
T 3izc_a 3 KFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLP 82 (136)
T ss_dssp --CCCCCCCBCCCSSSSCCBCBCCCCSSSCSCCSSSCCSCCBCCSSSSCCCCCCSSSCCCCCCTTHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEecccCChhhhhccCHHHHHhhhhceeeeEEEeccceee
Confidence 699999999999999999999999999997 999999 4 322 2 3569999999
Q ss_pred eceEEecC
Q 047135 56 TDIKIDIP 63 (134)
Q Consensus 56 T~~~i~i~ 63 (134)
|+|.++|+
T Consensus 83 TRy~vdi~ 90 (136)
T 3izc_a 83 TRYTLDVE 90 (136)
T ss_dssp HHHHHHHH
T ss_pred eeeeEccc
Confidence 99999875
No 9
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=99.27 E-value=6.4e-12 Score=98.79 Aligned_cols=60 Identities=23% Similarity=0.305 Sum_probs=57.0
Q ss_pred ccceecCeEEEEccccCCCcEEEEEEeecCCeEEEeCC----CCcceeeeccCeeeeceEEecC
Q 047135 4 KRYVEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAP----DMVRGQMNFKRLSLTDIKIDIP 63 (134)
Q Consensus 4 ~r~veiGrVV~i~~G~~~Gk~~VIVdiiD~~rvLVDGp----~v~Rk~~n~khl~lT~~~i~i~ 63 (134)
..++.||+||++..|+++||.|||++.+|++++||.|| +|+.+++|.+|+++|++.++|+
T Consensus 42 r~si~pGtVlIiL~Gr~~GKrvV~LKql~sgllLVtGP~~vn~vplrrvn~~~vi~TstkvDis 105 (191)
T 4a18_E 42 RNDIAPGTVLILLAGRFRGKRVVFLKQLKSGLLLVTGPYKVNGVPLKRVNQAYTLSTSTKVDLT 105 (191)
T ss_dssp CTTCCTTEEEEECSSTTTTBEEEEEEECTTSCEEEECCTTTSSCCSEEECGGGEEEEEEECCCT
T ss_pred hccccCCCEEEEeccccCCCEEEEEEecCCCeEEEecCccccCCceEEEeeeeEEeeeeEeecc
Confidence 45789999999999999999999999999999999999 6888999999999999999986
No 10
>3iz5_a 60S ribosomal protein L27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_a
Probab=99.27 E-value=1.6e-14 Score=108.50 Aligned_cols=59 Identities=27% Similarity=0.550 Sum_probs=52.5
Q ss_pred cceecCeEEEEccccCCCcEEEEEEeecCC-------eEEEeC----C-CCc----------c-------eeeeccCeee
Q 047135 5 RYVEIGRVALVNYGKEYGRLVVIVDVLDQN-------RALVDA----P-DMV----------R-------GQMNFKRLSL 55 (134)
Q Consensus 5 r~veiGrVV~i~~G~~~Gk~~VIVdiiD~~-------rvLVDG----p-~v~----------R-------k~~n~khl~l 55 (134)
+|++||+||++++|+++|+.||||+.+|++ ++||.| | +|. | +.+|++||+|
T Consensus 3 K~~kpGkVvivl~GryaGkKaVivk~~d~gt~drpy~halVaGIdryP~kvt~~M~kkki~KrskiK~FvKv~NynHlmP 82 (136)
T 3iz5_a 3 KFLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCFLKLVNFTHLMP 82 (136)
T ss_dssp SSCCCCCSCCCCCSSSSCCCCBCSCCSSSSSCSCSSCCSCCBCCSTTTTCCCCCCSSSCCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEeeccCChhhccCCCHHHhhhhhhceeeeEEEeecceec
Confidence 699999999999999999999999999998 999999 4 332 2 3569999999
Q ss_pred eceEEecC
Q 047135 56 TDIKIDIP 63 (134)
Q Consensus 56 T~~~i~i~ 63 (134)
|+|.++|+
T Consensus 83 TRY~vdi~ 90 (136)
T 3iz5_a 83 TRYTLDVD 90 (136)
T ss_dssp HHHHHHHH
T ss_pred cceEeecc
Confidence 99999885
No 11
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G 3o58_F 3o5h_F 3u5e_E 3u5i_E 4b6a_E
Probab=98.80 E-value=3.1e-09 Score=82.64 Aligned_cols=58 Identities=22% Similarity=0.340 Sum_probs=55.4
Q ss_pred ceecCeEEEEccccCCCcEEEEEEeecCCeEEEeCC----CCcceeeeccCeeeeceEEecC
Q 047135 6 YVEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAP----DMVRGQMNFKRLSLTDIKIDIP 63 (134)
Q Consensus 6 ~veiGrVV~i~~G~~~Gk~~VIVdiiD~~rvLVDGp----~v~Rk~~n~khl~lT~~~i~i~ 63 (134)
-+.||+|+++..|+++||.+|+++.+|++.+||.|| +||.+++|-+++..|+..|+|+
T Consensus 33 Si~pGtvlIil~Gr~~GkrvVfLKql~sglllVTGP~~lNgvplrR~~q~~vIaTstkidis 94 (176)
T 3izc_G 33 SLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVE 94 (176)
T ss_dssp HCCCCSCEECCSSSSSCCCBEEEEESSSSSEEEECCCSSSCCCCEEESSSSCEECSCCCSSS
T ss_pred cCCCCCEEEEeccccCCCEEEEEEecCCCeEEEecCceecCCcceeeecceEEeeeeeeecc
Confidence 478999999999999999999999999999999999 8999999999999999999876
No 12
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=95.74 E-value=0.028 Score=39.85 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=32.4
Q ss_pred eecCeEEEEccccCCCcEEEEEEeecCCeEEEeCC
Q 047135 7 VEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAP 41 (134)
Q Consensus 7 veiGrVV~i~~G~~~Gk~~VIVdiiD~~rvLVDGp 41 (134)
+..|--|.+.+|+|+||...|+.++..++|+|+|-
T Consensus 4 IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~ViVeGv 38 (102)
T 3r8s_U 4 IRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGI 38 (102)
T ss_dssp SCSSCEEEECSSSSTTCEEEEEEEETTTEEEETTC
T ss_pred ccCCCEEEEeEcCCCCeeeEEEEEEeCCEEEEeCe
Confidence 56788999999999999999999997799999997
No 13
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.63 E-value=0.022 Score=41.57 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=39.7
Q ss_pred eecCeEEEEccccCCCcEEEEEEee-cCCeEEEeCC------CCcc-eeeeccCeeeece
Q 047135 7 VEIGRVALVNYGKEYGRLVVIVDVL-DQNRALVDAP------DMVR-GQMNFKRLSLTDI 58 (134)
Q Consensus 7 veiGrVV~i~~G~~~Gk~~VIVdii-D~~rvLVDGp------~v~R-k~~n~khl~lT~~ 58 (134)
+..|--|.+.+|.|+|+.+.|+.|. +.++|+|+|- +.+. -.+.+.+++|++.
T Consensus 46 IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VEgvn~~k~~G~~~e~pIh~SNV~l~~~ 105 (121)
T 3j21_U 46 VRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIEL 105 (121)
T ss_dssp CCSSSEEEECSSSCSSEEEEEEEEETTTTEEEETTCEEECSSSCEEECCBCGGGEEEEEC
T ss_pred cccCCEEEEeecCCCCcEeEEEEEEecCCEEEEeCeEEEecCCcEEEcccCHHHeEEEcC
Confidence 5678899999999999999999998 4789999997 2111 2555566666553
No 14
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=94.97 E-value=0.028 Score=40.54 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=32.5
Q ss_pred eecCeEEEEccccCCCcEEEEEEee-cCCeEEEeCC
Q 047135 7 VEIGRVALVNYGKEYGRLVVIVDVL-DQNRALVDAP 41 (134)
Q Consensus 7 veiGrVV~i~~G~~~Gk~~VIVdii-D~~rvLVDGp 41 (134)
+..|-.|.+.+|+|+|+.+.|+.|+ +.++|+|+|-
T Consensus 16 IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VEGv 51 (115)
T 2zjr_R 16 FKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGV 51 (115)
T ss_dssp SCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESSS
T ss_pred ccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEeCc
Confidence 6789999999999999999999998 5689999998
No 15
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=94.67 E-value=0.044 Score=39.96 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=39.9
Q ss_pred eecCeEEEEccccCCCcEEEEEEee-cCCeEEEeCCCCcc-------eeeeccCeeeece
Q 047135 7 VEIGRVALVNYGKEYGRLVVIVDVL-DQNRALVDAPDMVR-------GQMNFKRLSLTDI 58 (134)
Q Consensus 7 veiGrVV~i~~G~~~Gk~~VIVdii-D~~rvLVDGp~v~R-------k~~n~khl~lT~~ 58 (134)
+..|-.|.+.+|+|+|+.+-|+.|. +.++|+|+|-.+.+ -.|.+.++++++.
T Consensus 43 IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEgvn~kK~~Gg~~e~pIh~SNV~i~~~ 102 (120)
T 1vq8_T 43 VNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDL 102 (120)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCEEECSSSCEEECCBCGGGEEEEEC
T ss_pred ccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeCeEeEcCCCCEEEeeechHHEEEEec
Confidence 6679999999999999999999998 56899999872211 2455555666553
No 16
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=94.39 E-value=0.045 Score=41.07 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=32.3
Q ss_pred eecCeEEEEccccCCCcE-EEEEEee-cCCeEEEeCC
Q 047135 7 VEIGRVALVNYGKEYGRL-VVIVDVL-DQNRALVDAP 41 (134)
Q Consensus 7 veiGrVV~i~~G~~~Gk~-~VIVdii-D~~rvLVDGp 41 (134)
|..|-.|.|.+|+|+|+. +.|+.|+ +.++|+|+|-
T Consensus 49 IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VEgv 85 (145)
T 2zkr_t 49 IRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERV 85 (145)
T ss_dssp CCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEETTC
T ss_pred cCCCCEEEEeecCCCCcceeEEEEEECCCCEEEEeee
Confidence 678999999999999999 9999998 5789999997
No 17
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=93.89 E-value=0.082 Score=37.00 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=28.2
Q ss_pred CeEEEEccccCCCcEEEEEEee-cCCeEEEeCC
Q 047135 10 GRVALVNYGKEYGRLVVIVDVL-DQNRALVDAP 41 (134)
Q Consensus 10 GrVV~i~~G~~~Gk~~VIVdii-D~~rvLVDGp 41 (134)
|--|.+.+|.|+||..-|+.++ +.++|+|+|-
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVeGv 33 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGL 33 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCCCEEEEeCC
Confidence 4457888999999999999998 5789999997
No 18
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=93.88 E-value=0.089 Score=37.71 Aligned_cols=38 Identities=32% Similarity=0.392 Sum_probs=33.4
Q ss_pred ccceecCeEEEEccccCCCcEEEEEEeec-CCeEEEeCC
Q 047135 4 KRYVEIGRVALVNYGKEYGRLVVIVDVLD-QNRALVDAP 41 (134)
Q Consensus 4 ~r~veiGrVV~i~~G~~~Gk~~VIVdiiD-~~rvLVDGp 41 (134)
+=-+..|--|.+.+|+|+||...|+.+.. .++|+|+|-
T Consensus 4 k~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVEGv 42 (110)
T 3v2d_Y 4 KMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGV 42 (110)
T ss_dssp CCSCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEETTS
T ss_pred ccccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEeCE
Confidence 33577899999999999999999999986 589999997
No 19
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=93.62 E-value=0.12 Score=32.10 Aligned_cols=33 Identities=12% Similarity=0.015 Sum_probs=28.2
Q ss_pred ceecCeEEEEccccCCCcEEEEEEeecC-CeEEE
Q 047135 6 YVEIGRVALVNYGKEYGRLVVIVDVLDQ-NRALV 38 (134)
Q Consensus 6 ~veiGrVV~i~~G~~~Gk~~VIVdiiD~-~rvLV 38 (134)
.+++|..|.+..||++|--+.|.++-.+ .++.|
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V 37 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEINPERGKVKV 37 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEE
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEE
Confidence 3579999999999999999999999765 46755
No 20
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=93.23 E-value=0.17 Score=37.20 Aligned_cols=52 Identities=19% Similarity=0.149 Sum_probs=39.1
Q ss_pred eecCeEEEEccccCCCcEEEEEEeec-CCeEEEeCCCCc------c-eeeeccCeeeece
Q 047135 7 VEIGRVALVNYGKEYGRLVVIVDVLD-QNRALVDAPDMV------R-GQMNFKRLSLTDI 58 (134)
Q Consensus 7 veiGrVV~i~~G~~~Gk~~VIVdiiD-~~rvLVDGp~v~------R-k~~n~khl~lT~~ 58 (134)
|..|--|.+.+|.|+|+-.-|+.|.. .++|+|+|-.+. . -.|.+..+++|+.
T Consensus 50 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEgVn~~K~~G~~~e~pIh~SNV~i~~~ 109 (127)
T 3u5e_Y 50 IRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVITKL 109 (127)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEETCEEECSSSCEEECCBCGGGEEEEEC
T ss_pred ccCCCEEEEeecCCCCccceEEEEECCCCEEEEeCeEEECCCCcEEEcccchHHEEEEcc
Confidence 55788999999999999999999986 589999997111 1 2455555666553
No 21
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.19 E-value=0.13 Score=34.31 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=30.2
Q ss_pred cccceecCeEEEEccccCCCcEEEEEEeecC-CeEEEeCC
Q 047135 3 FKRYVEIGRVALVNYGKEYGRLVVIVDVLDQ-NRALVDAP 41 (134)
Q Consensus 3 f~r~veiGrVV~i~~G~~~Gk~~VIVdiiD~-~rvLVDGp 41 (134)
+.|---+|+-|.|..||++|-+++|.|.-|. -||-++..
T Consensus 14 ~grd~liGktV~I~kGpyKG~~GiVkd~t~~~~RVELhs~ 53 (71)
T 2e70_A 14 RRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELHST 53 (71)
T ss_dssp CCTTSSTTSEEEECSSTTTTCEEEEEEECSSCEEEEESSS
T ss_pred cCccccCCCEEEEeccCCCCeEEEEEECCCCeEEEEecCC
Confidence 3455568999999999999999999999653 34544554
No 22
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=93.12 E-value=0.16 Score=38.32 Aligned_cols=53 Identities=17% Similarity=0.085 Sum_probs=39.9
Q ss_pred eecCeEEEEccccCCCcEEEEEEeec-CCeEEEeCC-CCcc------eeeeccCeeeeceE
Q 047135 7 VEIGRVALVNYGKEYGRLVVIVDVLD-QNRALVDAP-DMVR------GQMNFKRLSLTDIK 59 (134)
Q Consensus 7 veiGrVV~i~~G~~~Gk~~VIVdiiD-~~rvLVDGp-~v~R------k~~n~khl~lT~~~ 59 (134)
|..|--|.+.+|.|+|+..-|+.|.. .++|+|+|- -+.. -.|.+.+++||+..
T Consensus 49 IkKGD~V~Vi~GkdKGk~GkVl~V~~kk~~V~VEGVN~~K~~G~~~eapIh~SNV~i~~~k 109 (150)
T 3iz5_Y 49 IRKDDEVQVVRGSYKGREGKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLK 109 (150)
T ss_dssp CCSSSEEEECSSTTTTCEEEEEEEETTTTEEEETTCEEECTTSCEEECCBCGGGEEEEECC
T ss_pred cCCCCEEEEeecCCCCccceEEEEEcCCCEEEEeCcEEEeCCCCEEecccchHHEEEEccc
Confidence 56788999999999999999999986 589999997 1111 25555666666543
No 23
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=92.91 E-value=0.17 Score=33.69 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=30.3
Q ss_pred cccceecCeEEEEccccCCCcEEEEEEeecCCeEEE
Q 047135 3 FKRYVEIGRVALVNYGKEYGRLVVIVDVLDQNRALV 38 (134)
Q Consensus 3 f~r~veiGrVV~i~~G~~~Gk~~VIVdiiD~~rvLV 38 (134)
.++++++|-=|.+..|+++|--..||.|- +++|.|
T Consensus 14 LrK~F~~GDHVkVi~G~~~getGlVV~v~-~d~v~v 48 (69)
T 2do3_A 14 LRKYFKMGDHVKVIAGRFEGDTGLIVRVE-ENFVIL 48 (69)
T ss_dssp CCSSCCTTCEEEESSSTTTTCEEEEEEEC-SSCEEE
T ss_pred ceeeccCCCeEEEeccEEcCceEEEEEEe-CCEEEE
Confidence 36889999999999999999999999995 555655
No 24
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=91.85 E-value=0.28 Score=36.40 Aligned_cols=52 Identities=19% Similarity=0.142 Sum_probs=39.0
Q ss_pred eecCeEEEEccccCCCcEEEEEEeec-CCeEEEeCCCCcc-------eeeeccCeeeece
Q 047135 7 VEIGRVALVNYGKEYGRLVVIVDVLD-QNRALVDAPDMVR-------GQMNFKRLSLTDI 58 (134)
Q Consensus 7 veiGrVV~i~~G~~~Gk~~VIVdiiD-~~rvLVDGp~v~R-------k~~n~khl~lT~~ 58 (134)
|..|--|.+.+|.|+|+-.-|+.|.. .++|+|+|-.+.. -.|.+..+++|+.
T Consensus 49 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEgVn~~K~~G~~~e~pIh~SNV~i~~~ 108 (135)
T 4a17_S 49 VRKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVEKISKNKLNGAPYQIPLSASQLVLTKL 108 (135)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCCEEETTTEEECCCBCGGGEEEEEC
T ss_pred ccCCCEEEEeecCCCCceeeEEEEEcCCCEEEEeCeEEEcCCCCEEEcccchHHEEEEcc
Confidence 56788999999999999999999986 5899999972221 2455555555553
No 25
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.52 E-value=0.23 Score=31.38 Aligned_cols=32 Identities=19% Similarity=0.051 Sum_probs=27.7
Q ss_pred ceecCeEEEEccccCCCcEEEEEEeecCCeEEE
Q 047135 6 YVEIGRVALVNYGKEYGRLVVIVDVLDQNRALV 38 (134)
Q Consensus 6 ~veiGrVV~i~~G~~~Gk~~VIVdiiD~~rvLV 38 (134)
.+++|..|.+..||++|--++|.++-. .++.|
T Consensus 7 ~f~~GD~V~V~~Gpf~g~~G~V~evd~-e~v~V 38 (59)
T 2e6z_A 7 GFQPGDNVEVCEGELINLQGKILSVDG-NKITI 38 (59)
T ss_dssp SCCTTSEEEECSSTTTTCEEEECCCBT-TEEEE
T ss_pred cCCCCCEEEEeecCCCCCEEEEEEEeC-CEEEE
Confidence 468999999999999999999999854 57666
No 26
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=89.09 E-value=0.057 Score=42.29 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=32.4
Q ss_pred eecCeEEEEccccCCCcEEEEEEee-cCCeEEEeCC
Q 047135 7 VEIGRVALVNYGKEYGRLVVIVDVL-DQNRALVDAP 41 (134)
Q Consensus 7 veiGrVV~i~~G~~~Gk~~VIVdii-D~~rvLVDGp 41 (134)
+..|--|.+.+|.|+||...|+.|+ +.++|+|+|-
T Consensus 69 IkKGD~V~VIaGkDKGK~GkVl~V~~k~~rViVEGV 104 (191)
T 3bbo_W 69 VKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDL 104 (191)
T ss_dssp SCCSSCEEECSSSSTTCCCSCCCCCSSSCCCCCSSC
T ss_pred eecCCEEEEeecCCCCceEEEEEEECCCCEEEEeCC
Confidence 6789999999999999999999998 5789999997
No 27
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=88.85 E-value=1.2 Score=32.19 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=36.4
Q ss_pred ceecCeEEEEccccCCCcEEEEEEeecC-CeEEEeCCCCcc---eeeeccCeeee
Q 047135 6 YVEIGRVALVNYGKEYGRLVVIVDVLDQ-NRALVDAPDMVR---GQMNFKRLSLT 56 (134)
Q Consensus 6 ~veiGrVV~i~~G~~~Gk~~VIVdiiD~-~rvLVDGp~v~R---k~~n~khl~lT 56 (134)
-+++|.-|.+..||++|-.+.|.++-.+ +++.|.-....| =-+++.++.+.
T Consensus 91 ~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~~gr~tpvel~~~~v~~i 145 (152)
T 3p8b_B 91 GLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDAIVPIPVTIKGDYVRLI 145 (152)
T ss_dssp TCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESSCSSCCEEEEEGGGEEEE
T ss_pred cCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEEecceeEEEEECHHHEEEe
Confidence 4689999999999999999999999754 566664431222 24555555544
No 28
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=88.09 E-value=0.7 Score=34.31 Aligned_cols=33 Identities=27% Similarity=0.141 Sum_probs=28.2
Q ss_pred ceecCeEEEEccccCCCcEEEEEEeecC-CeEEE
Q 047135 6 YVEIGRVALVNYGKEYGRLVVIVDVLDQ-NRALV 38 (134)
Q Consensus 6 ~veiGrVV~i~~G~~~Gk~~VIVdiiD~-~rvLV 38 (134)
.+++|..|.|..||++|--++|.++-++ +++.|
T Consensus 127 ~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V 160 (181)
T 2jvv_A 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV 160 (181)
T ss_dssp CCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEE
T ss_pred cCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEE
Confidence 4679999999999999999999999755 47754
No 29
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=82.57 E-value=2.7 Score=30.29 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=28.0
Q ss_pred eecCeEEEEccccCCCcEEEEEEeecC-CeEEE--e-CC
Q 047135 7 VEIGRVALVNYGKEYGRLVVIVDVLDQ-NRALV--D-AP 41 (134)
Q Consensus 7 veiGrVV~i~~G~~~Gk~~VIVdiiD~-~rvLV--D-Gp 41 (134)
+++|.-|.|..|+++|..+.++++-.+ ..+.| + ||
T Consensus 71 P~~g~~V~Iv~G~~rG~~g~L~~id~~~~~~~V~l~~~~ 109 (127)
T 2ckk_A 71 PAPGKRILVLNGGYRGNEGTLESINEKTFSATIVIETGP 109 (127)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEEECSST
T ss_pred CCCCCEEEEEecccCCcEEEEEEEeCCCcEEEEEEccCC
Confidence 468999999999999999999999433 26666 4 66
No 30
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=75.22 E-value=4.4 Score=32.91 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=29.1
Q ss_pred ecCeEEEEccccCCCcEEEEEEeecC----CeEEE-eCC
Q 047135 8 EIGRVALVNYGKEYGRLVVIVDVLDQ----NRALV-DAP 41 (134)
Q Consensus 8 eiGrVV~i~~G~~~Gk~~VIVdiiD~----~rvLV-DGp 41 (134)
+.|-+|+++.|+..|+.++|+++..+ +.|.| |+.
T Consensus 178 e~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vkd~~ 216 (260)
T 2xzm_W 178 ESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAK 216 (260)
T ss_dssp CSSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEECTT
T ss_pred cCCCEEEEECCccceeEEEEEEEEecCCCCcEEEEEeCC
Confidence 89999999999999999999997554 67888 543
No 31
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=73.81 E-value=4.1 Score=33.97 Aligned_cols=33 Identities=15% Similarity=0.061 Sum_probs=28.3
Q ss_pred ceecCeEEEEccccCCCcEEEEEEeecCC-eEEE
Q 047135 6 YVEIGRVALVNYGKEYGRLVVIVDVLDQN-RALV 38 (134)
Q Consensus 6 ~veiGrVV~i~~G~~~Gk~~VIVdiiD~~-rvLV 38 (134)
.+++|..|.+..||++|--++|.++-.++ ++.|
T Consensus 298 ~f~~Gd~VrV~~GPF~G~~G~V~evd~ek~rv~V 331 (352)
T 2xhc_A 298 GFKVGDMVKIISGPFEDFAGVIKEIDPERQELKV 331 (352)
T ss_dssp CCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEE
T ss_pred cCCCCCEEEEeccCCCCcEEEEEEEcCCCCEEEE
Confidence 46799999999999999999999996554 6655
No 32
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=67.76 E-value=4.3 Score=32.00 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=23.7
Q ss_pred eecCeEEEEccccCCCcEEEEEEeec
Q 047135 7 VEIGRVALVNYGKEYGRLVVIVDVLD 32 (134)
Q Consensus 7 veiGrVV~i~~G~~~Gk~~VIVdiiD 32 (134)
++.|-+|++..|+..|+.++|.++.-
T Consensus 139 f~~G~l~mvtgG~n~GriG~I~~ie~ 164 (213)
T 3kbg_A 139 MQPGNKAYITAGSHVNQTGTISKIEA 164 (213)
T ss_dssp CSTTCEEEECSSTTTTCEEEEEEECC
T ss_pred cCCCCEEEEECCCcceEEEEEEEEEE
Confidence 47899999999999999999999963
No 33
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=66.38 E-value=4.4 Score=32.52 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=27.6
Q ss_pred eecCeEEEEccccCCCcEEEEEEeec-----CCeEEE
Q 047135 7 VEIGRVALVNYGKEYGRLVVIVDVLD-----QNRALV 38 (134)
Q Consensus 7 veiGrVV~i~~G~~~Gk~~VIVdiiD-----~~rvLV 38 (134)
++.|-+|++..|+..|+.++|++|.- .+-|.|
T Consensus 179 f~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V~v 215 (243)
T 3j20_E 179 FEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTI 215 (243)
T ss_dssp CCTTCEEEECSSSSTTCEEEEEECCCCCSSSCCEEEE
T ss_pred ccCCCEEEEECCccceEEEEEEEEEEecCCCceEEEE
Confidence 47899999999999999999999975 256666
No 34
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=64.89 E-value=5.2 Score=32.52 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=27.5
Q ss_pred eecCeEEEEccccCCCcEEEEEEeecC----CeEEE
Q 047135 7 VEIGRVALVNYGKEYGRLVVIVDVLDQ----NRALV 38 (134)
Q Consensus 7 veiGrVV~i~~G~~~Gk~~VIVdiiD~----~rvLV 38 (134)
++.|-+|++..|+..|+.++|++|.-+ +-|.|
T Consensus 175 fe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~v 210 (265)
T 3iz6_D 175 FDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHV 210 (265)
T ss_dssp CSTTCEEEECSSSSCSCEEEEEEEECCSSSCCEEEE
T ss_pred ccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEE
Confidence 478999999999999999999999753 46666
No 35
>3oym_A PFV integrase, P42IN; protein-DNA complex; HET: DNA; 2.02A {Human spumaretrovirus} PDB: 3oyn_A* 3s3o_A* 4be2_A* 3l2q_A 3l2s_A 3l2r_A* 3l2u_A* 3l2v_A* 3l2w_A* 3l2t_A* 3os1_A* 3os2_A* 3os0_A* 3oya_A* 3oy9_A* 3oyc_A* 3oyd_A* 3oye_A* 3oyb_A* 3oyg_A* ...
Probab=59.73 E-value=24 Score=27.86 Aligned_cols=52 Identities=12% Similarity=0.131 Sum_probs=39.5
Q ss_pred ceecCeEEEEcccc-------CCCcEEEEEEeecCCeEEE-eCCCCcceeeeccCeeeeceE
Q 047135 6 YVEIGRVALVNYGK-------EYGRLVVIVDVLDQNRALV-DAPDMVRGQMNFKRLSLTDIK 59 (134)
Q Consensus 6 ~veiGrVV~i~~G~-------~~Gk~~VIVdiiD~~rvLV-DGp~v~Rk~~n~khl~lT~~~ 59 (134)
-+++|..|++...+ ..| .+.|+++++++.+.+ |.++.. ...|+.+|.|....
T Consensus 319 ~~~~Gd~V~~~~~~~~Kl~~~w~G-Py~V~~~~~~~~~~l~~~~g~~-~~~~v~~Lkp~~~~ 378 (395)
T 3oym_A 319 SPVVGQLVQERVARPASLRPRWHK-PSTVLKVLNPRTVVILDHLGNN-RTVSIDNLKPTSHQ 378 (395)
T ss_dssp CCCTTCEEEEBCSSCCTTSCSBCC-CEEEEEEEETTEEEEECTTCCE-EEEEGGGEEECSCC
T ss_pred cCCCCcEEEEecCCCccCCcCCCC-CeEEEEEcCCCeEEEecCCCCc-ccEehhhccccCCC
Confidence 56899999997654 333 378889987776666 888655 88999999997654
No 36
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=48.59 E-value=21 Score=22.50 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=27.2
Q ss_pred cceecCeEEEE--ccccCCCcEEEEEEe-ecCCeEEE--eCC
Q 047135 5 RYVEIGRVALV--NYGKEYGRLVVIVDV-LDQNRALV--DAP 41 (134)
Q Consensus 5 r~veiGrVV~i--~~G~~~Gk~~VIVdi-iD~~rvLV--DGp 41 (134)
..+++|.-+.. ..++. ..|.|++| .++.+++| ||-
T Consensus 11 ~~F~vGmkLEa~d~~~p~--~~AtV~~v~~~~~~~~VhfdGw 50 (69)
T 3sd4_A 11 ISFEVGAQLEARDRLKNW--YPAHIEDIDYEEGKVLIHFKRW 50 (69)
T ss_dssp CCCSTTCEEEEECTTSCE--EEEEEEEEETTTTEEEEEETTS
T ss_pred CCcCCCCEEEEEECCCCc--cccEEEEEeccCCEEEEEeCCC
Confidence 45788888866 44554 78999999 58899999 886
No 37
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=47.17 E-value=23 Score=26.37 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=24.0
Q ss_pred eecCeEEEEccccCCCc--EEEEEEeecCCeEEEeCC
Q 047135 7 VEIGRVALVNYGKEYGR--LVVIVDVLDQNRALVDAP 41 (134)
Q Consensus 7 veiGrVV~i~~G~~~Gk--~~VIVdiiD~~rvLVDGp 41 (134)
+++|.++... +++ |. .++|++| ++..|.||+-
T Consensus 113 ~~~G~~~~~~-~~~-G~~~~~~V~~v-~~~~V~vD~N 146 (169)
T 4dt4_A 113 PEIGAIMLFT-AMD-GSEMPGVIREI-NGDSITVDFN 146 (169)
T ss_dssp CCTTCEEEEE-CTT-SCEEEEEEEEE-ETTEEEEECS
T ss_pred CCCCcEEEEE-CCC-CCEEEEEEEEE-cCCEEEEeCC
Confidence 6899998874 343 43 5677777 7789999997
No 38
>4a1x_C CP5-46-A peptide; hydrolase-peptide complex, unmodified inhibitory peptides; 1.90A {Synthetic construct} PDB: 4a1t_C
Probab=47.15 E-value=8.7 Score=20.55 Aligned_cols=14 Identities=36% Similarity=0.681 Sum_probs=10.1
Q ss_pred ecCeEEEEccccCC
Q 047135 8 EIGRVALVNYGKEY 21 (134)
Q Consensus 8 eiGrVV~i~~G~~~ 21 (134)
|.||+|+...||-.
T Consensus 2 elgrlvylldgpgy 15 (26)
T 4a1x_C 2 ELGRLVYLLDGPGY 15 (26)
T ss_pred ccceEEEEecCCCC
Confidence 56888888777754
No 39
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=46.38 E-value=16 Score=26.24 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=23.6
Q ss_pred ceecCeEEEEccccCCCc--EEEEEEeecCCeEEEeCC
Q 047135 6 YVEIGRVALVNYGKEYGR--LVVIVDVLDQNRALVDAP 41 (134)
Q Consensus 6 ~veiGrVV~i~~G~~~Gk--~~VIVdiiD~~rvLVDGp 41 (134)
-+++|.++.... ..|. .++|++| ++..|.||+-
T Consensus 93 ~~~~G~~~~~~~--~~G~~~~~~V~~v-~~~~v~vD~N 127 (151)
T 2kr7_A 93 ELEKGMSVFGQT--EDNQTIQAIIKDF-SATHVMVDYN 127 (151)
T ss_dssp CCCTTCEEEEEE--TTTEEEEEEEEEE-CSSEEEEEEC
T ss_pred CCccCCEEEEEC--CCCCEEEEEEEEE-CCCEEEEECC
Confidence 378898887642 2343 5667777 8889999987
No 40
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=46.00 E-value=4.3 Score=32.28 Aligned_cols=33 Identities=18% Similarity=0.051 Sum_probs=0.0
Q ss_pred ceecCeEEEEccccCCCcEEEEEEeecCC-eEEE
Q 047135 6 YVEIGRVALVNYGKEYGRLVVIVDVLDQN-RALV 38 (134)
Q Consensus 6 ~veiGrVV~i~~G~~~Gk~~VIVdiiD~~-rvLV 38 (134)
.+++|..|.|..||++|--++|.+|-.++ ++.|
T Consensus 194 ~~~~Gd~V~I~~Gpf~g~~G~v~ev~~~k~~~~V 227 (248)
T 1m1h_A 194 EFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTV 227 (248)
T ss_dssp ----------------------------------
T ss_pred cCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEE
Confidence 35799999999999999999999986543 4544
No 41
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=44.67 E-value=5.4 Score=32.38 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=27.4
Q ss_pred eecCeEEEEccccCCCcEEEEEEeecC----CeEEE
Q 047135 7 VEIGRVALVNYGKEYGRLVVIVDVLDQ----NRALV 38 (134)
Q Consensus 7 veiGrVV~i~~G~~~Gk~~VIVdiiD~----~rvLV 38 (134)
++.|-+|++..|+..|+.++|++|.-+ +-|.|
T Consensus 175 fe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~v 210 (261)
T 3u5c_E 175 FDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHI 210 (261)
T ss_dssp CCSSCCEEECSSTTTTCBCCCCEEECCTTSCCEEEE
T ss_pred ccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEE
Confidence 478999999999999999999999753 46666
No 42
>2k3a_A CHAP domain protein; monomer, putative amidase, structural genomics, PSI-2, protein structure initiative; NMR {Staphylococcus saprophyticus subsp} PDB: 2lrj_A
Probab=43.91 E-value=29 Score=25.67 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=28.6
Q ss_pred cceecCeEEEEccccCCCcEEEEEEeecCCeEEE
Q 047135 5 RYVEIGRVALVNYGKEYGRLVVIVDVLDQNRALV 38 (134)
Q Consensus 5 r~veiGrVV~i~~G~~~Gk~~VIVdiiD~~rvLV 38 (134)
.-.++|-|+....|. .|-.++|-.|.+++.++|
T Consensus 92 ~~P~~Gai~~~~~g~-yGHVA~Ve~V~~dgsi~i 124 (155)
T 2k3a_A 92 NSPEAGSILQSTAGG-YGHVAYVENVNSDGSVEV 124 (155)
T ss_dssp SCCCSSEEEECCTTS-SCCEEEEEEECTTCCEEE
T ss_pred CCCCcCEEEEeCCCC-CCeEEEEEEECCCCeEEE
Confidence 346899999888886 499999999999999999
No 43
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=43.51 E-value=29 Score=25.32 Aligned_cols=29 Identities=28% Similarity=0.293 Sum_probs=22.9
Q ss_pred eecCeEEEEccccCCCcEEEEEEeecCCeEEEeCC
Q 047135 7 VEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAP 41 (134)
Q Consensus 7 veiGrVV~i~~G~~~Gk~~VIVdiiD~~rvLVDGp 41 (134)
+++|..+... | ..++|++| ++.+|.||+-
T Consensus 103 ~~~G~~~~~~-~----~~~~V~~v-~~~~V~vD~N 131 (157)
T 3pr9_A 103 PIKGLTITID-G----IPGKIVSI-NSGRVLVDFN 131 (157)
T ss_dssp CCTTCEEEET-T----EEEEEEEE-ETTEEEEECS
T ss_pred cCCCcEEEec-C----CCeEEEEE-cCCEEEEECC
Confidence 6789999873 3 35788887 7789999997
No 44
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=43.44 E-value=26 Score=25.18 Aligned_cols=29 Identities=28% Similarity=0.235 Sum_probs=23.3
Q ss_pred eecCeEEEEccccCCCcEEEEEEeecCCeEEEeCC
Q 047135 7 VEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAP 41 (134)
Q Consensus 7 veiGrVV~i~~G~~~Gk~~VIVdiiD~~rvLVDGp 41 (134)
+++|..+.... ..++|++| ++.+|.||+-
T Consensus 104 ~~~G~~~~~~~-----~~~~V~~v-~~~~v~vD~N 132 (151)
T 1ix5_A 104 PEEGMVILAEG-----IPATITEV-TDNEVTLDFN 132 (151)
T ss_dssp CCTTEEEESSS-----CEEEEEEE-ETTEEEEECC
T ss_pred ccccCEEEECC-----eEEEEEEE-cCCEEEEeCC
Confidence 78899987644 67788888 7789999986
No 45
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=37.88 E-value=44 Score=25.00 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=27.9
Q ss_pred eecCeEEEEcc---------ccCCCcEEEEEEeecC-CeEEEeCC
Q 047135 7 VEIGRVALVNY---------GKEYGRLVVIVDVLDQ-NRALVDAP 41 (134)
Q Consensus 7 veiGrVV~i~~---------G~~~Gk~~VIVdiiD~-~rvLVDGp 41 (134)
+++||-|+.+- -+..|.++.+.+++|+ .|+||.|-
T Consensus 44 L~~Gq~V~LNEal~VVea~~~~~~Gev~tv~EvL~d~~RalV~~~ 88 (153)
T 2wfw_A 44 LALGQTVRLNEALTIVEAGTYEQVGEISTLREVLDDGLRALVVGH 88 (153)
T ss_dssp CCTTCEEEECTTCCEEEECCCCCSEEEEEEEEECTTSSEEEEECT
T ss_pred CCCCCEEEECCceEEEEccCCCCccCEEEEEEEeCCCCeEEEEcc
Confidence 56787776643 3678999999999999 89999555
No 46
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=37.32 E-value=33 Score=25.35 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=26.4
Q ss_pred ceecCeEEEEccccCCC-cEEEEEEeecCCeEEEeCC-CCcceee
Q 047135 6 YVEIGRVALVNYGKEYG-RLVVIVDVLDQNRALVDAP-DMVRGQM 48 (134)
Q Consensus 6 ~veiGrVV~i~~G~~~G-k~~VIVdiiD~~rvLVDGp-~v~Rk~~ 48 (134)
-+++|..+.... + .| -.++|++| ++..|.||+- ++.=+..
T Consensus 89 ~~~~G~~~~~~~-~-~G~~~~~V~~v-~~~~V~vD~NHPLAGk~L 130 (171)
T 2k8i_A 89 ELQVGMRFLAET-D-QGPVPVEITAV-EDDHVVVDGNHMLAGQNL 130 (171)
T ss_dssp CCCTTCEEEEEE-T-TEEEEEEEEEE-CSSEEEEESCCSSCCCEE
T ss_pred CccCCcEEEEEC-C-CCcEEEEEEEE-cCCEEEEeCCCCCCCCeE
Confidence 378999888753 2 13 34556666 7899999997 5444433
No 47
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=32.09 E-value=41 Score=24.44 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=26.0
Q ss_pred ceecCeEEEEccccCCCc--EEEEEEeecCCeEEEeCC-CCcce
Q 047135 6 YVEIGRVALVNYGKEYGR--LVVIVDVLDQNRALVDAP-DMVRG 46 (134)
Q Consensus 6 ~veiGrVV~i~~G~~~Gk--~~VIVdiiD~~rvLVDGp-~v~Rk 46 (134)
-+++|..+.... + .|+ .++|++| +++.|.||+- ++.=+
T Consensus 84 ~~~~G~~~~~~~-~-~G~~~~~~V~~v-~~~~v~vD~NHPLAGk 124 (158)
T 3cgm_A 84 EVVPGAQFYAQD-M-EGNPMPLTVVAV-EGEEVTVDFNHPLAGK 124 (158)
T ss_dssp CCCTTCEEEEEE-T-TTEEEEEEEEEE-ETTEEEEECSCTTTTC
T ss_pred CCccCCEEEEEC-C-CCCEEEEEEEEE-CCCEEEEeCCccccCC
Confidence 478898887642 2 255 3667777 7789999997 44433
No 48
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=31.82 E-value=53 Score=25.61 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=35.0
Q ss_pred eecCeEEEEccccCCCcEEEEEEeecCCeEEEeCC-CCcceeeeccCeeeeceEEecCCCCChHHHHHHHHH
Q 047135 7 VEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAP-DMVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEK 77 (134)
Q Consensus 7 veiGrVV~i~~G~~~Gk~~VIVdiiD~~rvLVDGp-~v~Rk~~n~khl~lT~~~i~i~~~~~~~~v~ka~e~ 77 (134)
+++|..+... | ..++|++| ++.+|.||+- ++.=+..+ ..=.++++ +.++.+++...++-
T Consensus 103 ~~vG~~~~~~-~----~~g~V~~v-~~~~V~vD~NHPLAGk~L~-----F~vev~~v-~eat~eei~~~~~~ 162 (231)
T 3prb_A 103 PIKGLTITID-G----IPGKIVSI-NSGRVLVDFNHELAGKEVK-----YRIKIEEV-VDDKKNIVKEIVKM 162 (231)
T ss_dssp CCTTCEEEET-T----EEEEEEEE-ETTEEEEECSCTTTTCCEE-----EEEEEEEE-CCSHHHHHHHHHHH
T ss_pred CCCCcEEEec-C----CCEEEEEE-cCCEEEEeCCCccCCCEEE-----EEEEEEEE-ecCCHHHHHHHHHH
Confidence 6789999873 3 35788888 7789999996 33222222 11122222 34666666665543
No 49
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=31.75 E-value=24 Score=32.74 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=23.2
Q ss_pred ccceecCeEEEEccccCCCcEEEEEEeec
Q 047135 4 KRYVEIGRVALVNYGKEYGRLVVIVDVLD 32 (134)
Q Consensus 4 ~r~veiGrVV~i~~G~~~Gk~~VIVdiiD 32 (134)
.+|+.+||||.+..|.+--.++||++...
T Consensus 606 ~~~l~~gr~v~~~~~~~~~~~~~v~~~~~ 634 (997)
T 4a4z_A 606 LHILKEGRLVAFRDPNDCLKLGFVFKVSL 634 (997)
T ss_dssp HHHTCTTEEEEEECTTCCEEEEEEEEEET
T ss_pred HhhCCCCCEEEEecCCCCeeEEEEEeecc
Confidence 46889999999988764445999999753
No 50
>2rde_A Uncharacterized protein VCA0042; C-DI-GMP, structural genomics, PSI protein structure initiative, northeast structural genomics consortium, NESG; HET: C2E; 1.92A {Vibrio cholerae} SCOP: b.45.2.1 b.45.2.2 PDB: 1yln_A* 3kyg_A*
Probab=31.63 E-value=68 Score=24.13 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=26.3
Q ss_pred cceecCeEEEEccccCCC----cEEEEEEeecCCeEEEeCC
Q 047135 5 RYVEIGRVALVNYGKEYG----RLVVIVDVLDQNRALVDAP 41 (134)
Q Consensus 5 r~veiGrVV~i~~G~~~G----k~~VIVdiiD~~rvLVDGp 41 (134)
+.+++|..+.+..-...| =..-|+++.++++++||.|
T Consensus 33 ~~l~~G~~l~i~i~~~~g~~~~~~s~lig~~~~~~l~i~~P 73 (251)
T 2rde_A 33 AMVEHSSELTLSITTPVGTKFVCRTPFIGTHTDKFLLVEMP 73 (251)
T ss_dssp HTSCTTCEEEEEEECTTCCEEEEEEEEEEEETTTEEEEECC
T ss_pred hcCCCCCEEEEEEECCCCCeEEEEEEEEEEeCCCEEEEeCC
Confidence 468999999876422223 2455677777889999988
No 51
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=31.13 E-value=77 Score=22.45 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=25.4
Q ss_pred ceecCeEEEEcc-----ccCCCcEEEEEEeecCCeEEE
Q 047135 6 YVEIGRVALVNY-----GKEYGRLVVIVDVLDQNRALV 38 (134)
Q Consensus 6 ~veiGrVV~i~~-----G~~~Gk~~VIVdiiD~~rvLV 38 (134)
.+.+|=+|.+.. | +.++.+||.+++|...+.|
T Consensus 14 Wl~~~I~Vrii~k~~~~g-~y~~KgvV~~V~~~~~c~V 50 (127)
T 2ckk_A 14 WLQPEIIVKIITKKLGEK-YHKKKAIVKEVIDKYTAVV 50 (127)
T ss_dssp CCCTTBEEEECCSTTCGG-GTTCEEEEEEEETTTEEEE
T ss_pred cccCCeEEEEEEccCCCc-ccCceEEEEEecCCCeEEE
Confidence 456787888854 4 8999999999998776666
No 52
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=30.50 E-value=39 Score=22.37 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=13.3
Q ss_pred EEEEEEeecCCeEEE
Q 047135 24 LVVIVDVLDQNRALV 38 (134)
Q Consensus 24 ~~VIVdiiD~~rvLV 38 (134)
.+.|++++|+++++|
T Consensus 21 vG~v~e~~dd~~~iV 35 (85)
T 3h43_A 21 VGTVVDKVGERKVVV 35 (85)
T ss_dssp EEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCCEEEE
Confidence 578899999999999
No 53
>2d7e_A Primosomal protein N'; inter-twined, hydrolase; 2.50A {Escherichia coli} PDB: 2d7g_A* 2d7h_A* 2dwl_A 2dwm_A 2dwn_A*
Probab=26.55 E-value=50 Score=22.09 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=20.8
Q ss_pred eecCeEEEEccccCCC-cEEEEEEeecC
Q 047135 7 VEIGRVALVNYGKEYG-RLVVIVDVLDQ 33 (134)
Q Consensus 7 veiGrVV~i~~G~~~G-k~~VIVdiiD~ 33 (134)
+++|..|.+-.|+ +- ..++|+++.++
T Consensus 26 ~~~G~rV~VPfg~-r~~~~G~V~~~~~~ 52 (105)
T 2d7e_A 26 VKAGCRVRVPFGK-QQERIGIVVSVSDA 52 (105)
T ss_dssp CCTTCEEEEEETT-TEEEEEEEEEEESC
T ss_pred CCCCcEEEEeCCC-ccEEEEEEEEeecC
Confidence 7899999999997 44 57888887553
No 54
>3cp0_A Membrane protein implicated in regulation of MEMB protease activity; beta barrel, structural genomics, PSI-2; 1.65A {Corynebacterium glutamicum atcc 13032}
Probab=25.78 E-value=59 Score=20.67 Aligned_cols=39 Identities=8% Similarity=0.083 Sum_probs=20.9
Q ss_pred cccceecCeEEEEccccCCCcEEEEEEeec--CCeEEEeCC
Q 047135 3 FKRYVEIGRVALVNYGKEYGRLVVIVDVLD--QNRALVDAP 41 (134)
Q Consensus 3 f~r~veiGrVV~i~~G~~~Gk~~VIVdiiD--~~rvLVDGp 41 (134)
++|++.-+.-.....-.+-|+.+++++-++ ..+|.++|.
T Consensus 7 ~~r~~~~~~~~~~~~~~liG~~~~v~~~i~~~~G~V~~~G~ 47 (82)
T 3cp0_A 7 IRKRLLKPKVLDSSPRALVGHRAEVLEDVGATSGQVRLDGS 47 (82)
T ss_dssp -------------CGGGGTTCEEEEEECBCSSCCEEEETTE
T ss_pred hhhhccCCCCccCChhhcCCCEEEEEEEeCCCCEEEEECCE
Confidence 445554333244445567899999999875 378999986
No 55
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=24.95 E-value=33 Score=32.27 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=21.5
Q ss_pred cceecCeEEEEccc-cCCCcEEEEEEee
Q 047135 5 RYVEIGRVALVNYG-KEYGRLVVIVDVL 31 (134)
Q Consensus 5 r~veiGrVV~i~~G-~~~Gk~~VIVdii 31 (134)
+|+++||||.+..| ....-++||++..
T Consensus 707 ~~l~~G~~v~~~~~~~~~~~~~~v~~~~ 734 (1108)
T 3l9o_A 707 SFLQPGRLVEISVNGKDNYGWGAVVDFA 734 (1108)
T ss_dssp HHCCTTEEEEECCTTCCEEEEEEEEEEC
T ss_pred hhCCCCCEEEEecCCCcccceEEEEecc
Confidence 58899999999885 3445689999874
No 56
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=24.26 E-value=53 Score=22.56 Aligned_cols=15 Identities=33% Similarity=0.663 Sum_probs=10.9
Q ss_pred EEEEEEeecCCeEEE
Q 047135 24 LVVIVDVLDQNRALV 38 (134)
Q Consensus 24 ~~VIVdiiD~~rvLV 38 (134)
++.+++++|+++++|
T Consensus 40 Vg~v~e~~d~~~~iV 54 (109)
T 2wg5_A 40 VGVVSDILEDGRVVV 54 (109)
T ss_dssp EEEEEEECTTSCEEE
T ss_pred EEEEEEEecCCEEEE
Confidence 466777777777777
No 57
>2jrn_A CHAP domain protein; monomer, putative amidase, structural genomics, PSI-2, protein structure initiative; NMR {Staphylococcus saprophyticus} PDB: 2k3a_A 2lrj_A
Probab=23.78 E-value=89 Score=23.50 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=27.9
Q ss_pred cceecCeEEEEccccCCCcEEEEEEeecCCeEEE
Q 047135 5 RYVEIGRVALVNYGKEYGRLVVIVDVLDQNRALV 38 (134)
Q Consensus 5 r~veiGrVV~i~~G~~~Gk~~VIVdiiD~~rvLV 38 (134)
.-.++|-|+....| .-|-.++|-.|.+++.++|
T Consensus 92 ~tP~vGaI~~~~~G-~YGHVAvVe~V~~DGsI~I 124 (163)
T 2jrn_A 92 NSPEAGSILQSTAG-GYGHVAYVENVNSDGSVEV 124 (163)
T ss_dssp SCCCTTEEEEECTT-TTCEEEEEEECSSSSCEEE
T ss_pred cCCCCCEEEEeCCC-CCCEEEEEEEECCCCcEEE
Confidence 35689999988777 5699999999988888998
No 58
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=22.24 E-value=40 Score=31.37 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=20.8
Q ss_pred cceecCeEEEEcc--ccCCCcEEEEEEee
Q 047135 5 RYVEIGRVALVNY--GKEYGRLVVIVDVL 31 (134)
Q Consensus 5 r~veiGrVV~i~~--G~~~Gk~~VIVdii 31 (134)
+|+.+||||.+.. |.+ ..++||++..
T Consensus 609 ~~l~~Gr~v~~~~~~~~~-~~~~v~~~~~ 636 (1010)
T 2xgj_A 609 SFLQPGRLVEISVNGKDN-YGWGAVVDFA 636 (1010)
T ss_dssp GGCCTTEEEEEEETTTEE-EEEEEEEEEE
T ss_pred hhcCCCcEEEEEcCCCCc-ceeEEEEecc
Confidence 7899999999987 443 3589999864
No 59
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=21.74 E-value=73 Score=22.69 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=26.7
Q ss_pred cceecCeEEEEc--cccCCCcEEEEEEeecCCeEEE---eCC
Q 047135 5 RYVEIGRVALVN--YGKEYGRLVVIVDVLDQNRALV---DAP 41 (134)
Q Consensus 5 r~veiGrVV~i~--~G~~~Gk~~VIVdiiD~~rvLV---DGp 41 (134)
+-|.+|+-|+.. .|++- .|.|+++-.+.+..| ||.
T Consensus 4 ~~v~vGq~V~akh~ngryy--~~~V~~~~~~~~y~V~F~DgS 43 (118)
T 2qqr_A 4 QSITAGQKVISKHKNGRFY--QCEVVRLTTETFYEVNFDDGS 43 (118)
T ss_dssp SCCCTTCEEEEECTTSSEE--EEEEEEEEEEEEEEEEETTSC
T ss_pred ceeccCCEEEEECCCCCEE--eEEEEEEeeEEEEEEEcCCCC
Confidence 457899999874 35554 688999888888888 676
No 60
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=21.64 E-value=33 Score=26.00 Aligned_cols=40 Identities=20% Similarity=0.300 Sum_probs=25.5
Q ss_pred ceecCeEEEEccccCCCc-EEEEEEeecCCeEEEeCC-CCcceee
Q 047135 6 YVEIGRVALVNYGKEYGR-LVVIVDVLDQNRALVDAP-DMVRGQM 48 (134)
Q Consensus 6 ~veiGrVV~i~~G~~~Gk-~~VIVdiiD~~rvLVDGp-~v~Rk~~ 48 (134)
-+++|.++.+.. + .|. .++|++| ++..|.||+- ++.=|.+
T Consensus 89 ~~~~G~~~~~~~-~-~G~~~~~V~~v-~~~~V~vD~NHPLAGk~L 130 (196)
T 2kfw_A 89 ELQVGMRFLAET-D-QGPVPVEITAV-EDDHVVVDGNHMLAGQNL 130 (196)
T ss_dssp CCCTTCEEEEEE-T-TEEEEEEBCCC-CSSSEEECCCCTTSCCCC
T ss_pred CcccCCEEEEEC-C-CCcEEEEEEEE-cCCEEEEeCCCCCCCCeE
Confidence 378999887642 2 233 3445555 7889999997 5444443
No 61
>2wnw_A Activated by transcription factor SSRB; hydrolase, salmonella typhimurium, O-glycosyl hydrolase family 30; 2.00A {Salmonella enterica subsp}
Probab=20.79 E-value=71 Score=26.77 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=13.2
Q ss_pred cccceecCeEEEEcccc
Q 047135 3 FKRYVEIGRVALVNYGK 19 (134)
Q Consensus 3 f~r~veiGrVV~i~~G~ 19 (134)
|+|||.||-+.+-..+.
T Consensus 373 fSkfirPGa~rI~~~~~ 389 (447)
T 2wnw_A 373 FCRYVRPGARVMLSSSY 389 (447)
T ss_dssp HHTTCCTTCEEEEEEES
T ss_pred HHhhcCCCCEEEEeecC
Confidence 78999999887765443
No 62
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=20.31 E-value=1.5e+02 Score=19.62 Aligned_cols=35 Identities=20% Similarity=0.017 Sum_probs=22.4
Q ss_pred cceecCeEEEEcc--ccCCCcEEEEEEee-cCCeEEE--eCC
Q 047135 5 RYVEIGRVALVNY--GKEYGRLVVIVDVL-DQNRALV--DAP 41 (134)
Q Consensus 5 r~veiGrVV~i~~--G~~~Gk~~VIVdii-D~~rvLV--DGp 41 (134)
.-+++|.-+.... |+. -.|+|+.+- ++.+++| ||-
T Consensus 18 ~~F~vGmkLEA~D~~~~~--~~a~i~~v~~~~~~v~VHfdGW 57 (88)
T 2eqm_A 18 ITFEIGARLEALDYLQKW--YPSRIEKIDYEEGKMLVHFERW 57 (88)
T ss_dssp CCCCSSCEEEEECTTSCE--EEEEEEEEETTTTEEEEEESSS
T ss_pred CcCCCCCEEEEEcCCCCe--eEEEEEEEeccCCEEEEEECCC
Confidence 4567888885544 444 455555332 4679999 987
No 63
>1y71_A Kinase-associated protein B; structural genomics, midwest CE structural genomics, MCSG, protein structure initiative, PS unknown function; 1.95A {Bacillus cereus} SCOP: b.34.16.1
Probab=20.13 E-value=2.1e+02 Score=20.77 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=26.9
Q ss_pred eeeccCeeeeceEEecCCCCChHHHHHHHHHhchHHHhhhchhHhhHHH
Q 047135 47 QMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIV 95 (134)
Q Consensus 47 ~~n~khl~lT~~~i~i~~~~~~~~v~ka~e~~~v~~kw~~s~waKk~~~ 95 (134)
+-|+.+=++-+|--+|| .-.+.|+.||++..-.-.=..|.||++.-+
T Consensus 73 k~~ip~~~vk~yegeip--dY~~SLq~Al~~~~~~L~~~~s~~A~~sL~ 119 (130)
T 1y71_A 73 QTNIPEQMVKKYEGEIP--DYTESLKLALETQMNSFSEDDSPFAERSLE 119 (130)
T ss_dssp EEEEEGGGEEECCSCCC--CHHHHHHHHHHHHHHTTTTCCSHHHHHHHH
T ss_pred HhcCCHHhccccCCCCC--CHHHHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 33444444444444555 367889999987543333345888876543
Done!