BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047136
         (142 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1
          Length = 327

 Score = 28.5 bits (62), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 120 CYFSASSSLALGQSHQQTLIY 140
           C++ A  S+ALG  HQ+ +IY
Sbjct: 124 CFYLAEISMALGHLHQKGIIY 144


>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
 pdb|3A60|B Chain B, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
 pdb|3A61|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form Ii)
          Length = 327

 Score = 28.5 bits (62), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 120 CYFSASSSLALGQSHQQTLIY 140
           C++ A  S+ALG  HQ+ +IY
Sbjct: 124 CFYLAEISMALGHLHQKGIIY 144


>pdb|2EGG|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
           Geobacillus Kaustophilus
 pdb|2EGG|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
           Geobacillus Kaustophilus
          Length = 297

 Score = 27.7 bits (60), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 29  RRAAAQNSSVANKGHFVVYTTDNMRFTVPLE 59
           RR  A N+ + N G  V Y TD + +   LE
Sbjct: 102 RRIGAVNTIINNDGRLVGYNTDGLGYVQALE 132


>pdb|3T7V|A Chain A, Crystal Structure Of Methylornithine Synthase (Pylb)
          Length = 350

 Score = 26.6 bits (57), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 57  PLEYLSRNVFIELLRMSEEEFGLP 80
           P  Y   N F+EL+++ +EE GLP
Sbjct: 119 PYYYEDPNRFVELVQIVKEELGLP 142


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.132    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,701,043
Number of Sequences: 62578
Number of extensions: 131028
Number of successful extensions: 274
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 4
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)