Query 047136
Match_columns 142
No_of_seqs 129 out of 671
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 13:52:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3drz_A BTB/POZ domain-containi 66.6 15 0.00052 25.1 5.8 62 42-105 6-72 (107)
2 2vkp_A BTB/POZ domain-containi 63.5 11 0.00038 24.7 4.5 58 44-105 11-74 (109)
3 1und_A Advillin, P92; actin bi 52.3 5.5 0.00019 23.5 1.2 19 59-77 1-19 (37)
4 1w8x_N Protein P31, protein C, 49.7 5 0.00017 29.4 0.8 28 40-67 86-123 (126)
5 2vpk_A Myoneurin; transcriptio 43.4 35 0.0012 22.6 4.4 52 46-105 27-83 (116)
6 1vd2_A Protein kinase C, IOTA 43.4 18 0.00061 24.9 2.8 35 49-87 15-49 (89)
7 2al3_A TUG long isoform; TUG U 39.8 21 0.00072 24.8 2.8 37 43-81 11-47 (90)
8 1r29_A B-cell lymphoma 6 prote 36.6 41 0.0014 22.6 3.9 55 46-105 34-92 (127)
9 2xko_C PIPX, global nitrogen r 33.5 4.2 0.00014 28.6 -1.7 14 58-71 4-17 (89)
10 3ga1_A Nucleus accumbens-assoc 33.1 60 0.0021 21.9 4.3 53 45-105 37-93 (129)
11 3drx_A BTB/POZ domain-containi 30.6 48 0.0016 25.9 3.8 63 41-105 11-78 (202)
12 1yu8_X Villin; alpha helix, 3- 28.8 20 0.00069 23.6 1.1 20 59-78 31-50 (67)
13 1z3x_A Putative cytidyltransfe 26.3 4.3 0.00015 32.9 -3.0 30 36-66 207-236 (238)
14 1qzp_A Dematin; villin headpie 25.3 18 0.00061 23.8 0.4 20 59-78 32-51 (68)
15 3ohu_A Transcription regulator 25.2 62 0.0021 21.6 3.2 55 45-105 36-94 (125)
16 2if5_A Zinc finger and BTB dom 24.7 99 0.0034 20.3 4.2 56 46-105 30-88 (120)
17 2k6m_S Supervillin; SVHP, HP, 24.0 22 0.00074 23.4 0.6 20 59-78 31-50 (67)
18 1ujs_A Actin-binding LIM prote 23.7 24 0.00082 24.5 0.8 20 59-78 46-65 (88)
19 2bkf_A Zinc-finger protein NBR 23.3 1.3E+02 0.0046 20.6 4.6 49 46-96 12-69 (87)
20 3b84_A Zinc finger and BTB dom 23.3 1.2E+02 0.0042 20.1 4.5 52 46-105 29-83 (119)
21 3n5b_B ASR0485 protein; PII, P 23.2 8.4 0.00029 28.0 -1.7 14 59-72 28-41 (112)
22 1y74_B MLIN-2/CASK, peripheral 22.6 30 0.001 20.7 1.0 20 59-78 26-49 (50)
23 1y6i_A Mg-chelatase cofactor G 21.4 9.7 0.00033 30.7 -1.8 30 36-67 199-229 (233)
24 1zav_U 50S ribosomal protein L 20.9 52 0.0018 18.3 1.7 13 66-78 18-30 (30)
25 2ppi_A Gigaxonin; BTB domain, 20.5 1.4E+02 0.0049 20.7 4.5 55 50-105 55-112 (144)
No 1
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=66.63 E-value=15 Score=25.14 Aligned_cols=62 Identities=11% Similarity=0.164 Sum_probs=45.0
Q ss_pred CeEEEEeccccEEeEeccCCC-cH--HHHHHHHhhhHhcC--CCCCCCeeecCchHHHHHHHHHHhccC
Q 047136 42 GHFVVYTTDNMRFTVPLEYLS-RN--VFIELLRMSEEEFG--LPSNGPITLPCDSTFLNYVMTLVKGCI 105 (142)
Q Consensus 42 G~~~VyVGe~~RfvVp~~yL~-hp--~F~~LL~~aeeEfG--~~~~G~L~iPC~~~~Fe~vl~~i~~~~ 105 (142)
..+.+-|| ++||.+...-|. +| .|..|.... .++. .+.+|.+-|-.|...|++|+..++.+.
T Consensus 6 ~~v~LNVG-G~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~ 72 (107)
T 3drz_A 6 KWVRLNVG-GTYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGK 72 (107)
T ss_dssp CEEEEEET-TEEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSC
T ss_pred CEEEEEEC-CEEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhCCCe
Confidence 46677787 678988877664 34 566765432 1222 346789999999999999999998764
No 2
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=63.54 E-value=11 Score=24.69 Aligned_cols=58 Identities=10% Similarity=0.083 Sum_probs=41.6
Q ss_pred EEEEeccc---cEEeEeccCC--CcHHHHHHHHhhhHhcCCCCCCCeeec-CchHHHHHHHHHHhccC
Q 047136 44 FVVYTTDN---MRFTVPLEYL--SRNVFIELLRMSEEEFGLPSNGPITLP-CDSTFLNYVMTLVKGCI 105 (142)
Q Consensus 44 ~~VyVGe~---~RfvVp~~yL--~hp~F~~LL~~aeeEfG~~~~G~L~iP-C~~~~Fe~vl~~i~~~~ 105 (142)
+.+.||++ ++|-+.-..| ..|.|++++...-.|- . ..|.+| .+...|+.++..+-.+.
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt~~ 74 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYSDE 74 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcCCC
Confidence 34556653 8999998888 5899999997643332 2 678887 68999999999988764
No 3
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=52.28 E-value=5.5 Score=23.50 Aligned_cols=19 Identities=26% Similarity=0.669 Sum_probs=17.2
Q ss_pred cCCCcHHHHHHHHhhhHhc
Q 047136 59 EYLSRNVFIELLRMSEEEF 77 (142)
Q Consensus 59 ~yL~hp~F~~LL~~aeeEf 77 (142)
.||+.-.|++++.++.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999998
No 4
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=49.74 E-value=5 Score=29.36 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=19.0
Q ss_pred CCCeEEEEeccccEEe----------EeccCCCcHHHH
Q 047136 40 NKGHFVVYTTDNMRFT----------VPLEYLSRNVFI 67 (142)
Q Consensus 40 pkG~~~VyVGe~~Rfv----------Vp~~yL~hp~F~ 67 (142)
..||+|+.|-.+.+|+ +|+-|||.|+-+
T Consensus 86 ~QGYfPlL~~~~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 86 KQGYFPLLVPGRAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCSSCCEEECCSSSSEEEEEEEESSCCCCSCCC-----
T ss_pred CcccceeeccchhhhhhhhhcCCCcceeeEEEeceeee
Confidence 5799999997766665 688899988744
No 5
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=43.41 E-value=35 Score=22.61 Aligned_cols=52 Identities=12% Similarity=0.172 Sum_probs=39.9
Q ss_pred EEeccccEEeEeccCC--CcHHHHHHHHhhhHhcCCCCCCCeeec---CchHHHHHHHHHHhccC
Q 047136 46 VYTTDNMRFTVPLEYL--SRNVFIELLRMSEEEFGLPSNGPITLP---CDSTFLNYVMTLVKGCI 105 (142)
Q Consensus 46 VyVGe~~RfvVp~~yL--~hp~F~~LL~~aeeEfG~~~~G~L~iP---C~~~~Fe~vl~~i~~~~ 105 (142)
+.|| +++|-+.-..| ..|.|++++... .++.+.|+ .+...|+.++..+-.+.
T Consensus 27 l~v~-~~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~Yt~~ 83 (116)
T 2vpk_A 27 IVIG-EFQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFIYTGT 83 (116)
T ss_dssp EEET-TEEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHHHHSC
T ss_pred EEEC-CEEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHHcCCC
Confidence 3444 56787777777 579999999764 35678887 78999999999988764
No 6
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=43.35 E-value=18 Score=24.93 Aligned_cols=35 Identities=14% Similarity=0.037 Sum_probs=27.6
Q ss_pred ccccEEeEeccCCCcHHHHHHHHhhhHhcCCCCCCCeee
Q 047136 49 TDNMRFTVPLEYLSRNVFIELLRMSEEEFGLPSNGPITL 87 (142)
Q Consensus 49 Ge~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~i 87 (142)
||-.|+-||. ...|.+|.++-.+-|++..+.++++
T Consensus 15 gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~~~~f~l 49 (89)
T 1vd2_A 15 GDIMITHFEP----SISFEGLCNEVRDMCSFDNEQLFTM 49 (89)
T ss_dssp SCEEEEEECT----TCCHHHHHHHHHHHTTCCSSCCEEE
T ss_pred CeEEEEECCC----CCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 6778888888 4589999999999999865555554
No 7
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=39.85 E-value=21 Score=24.79 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=27.8
Q ss_pred eEEEEeccccEEeEeccCCCcHHHHHHHHhhhHhcCCCC
Q 047136 43 HFVVYTTDNMRFTVPLEYLSRNVFIELLRMSEEEFGLPS 81 (142)
Q Consensus 43 ~~~VyVGe~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~ 81 (142)
++.|.--..+|+.|++ -..-.+.++|++|-+.|||+.
T Consensus 11 ~v~Vl~~n~rr~~VKv--tp~t~L~~VL~eaC~K~gl~~ 47 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKV--TPSTVLLQVLEDTCRRQDFNP 47 (90)
T ss_dssp CEEEECTTSCEEEECC--CTTSBHHHHHHHHHHHTTCCG
T ss_pred EEEEEcCCCcEEEEEE--CCCCCHHHHHHHHHHHhCCCh
Confidence 3444445689999998 344478899999999999974
No 8
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=36.56 E-value=41 Score=22.62 Aligned_cols=55 Identities=13% Similarity=0.217 Sum_probs=41.8
Q ss_pred EEeccccEEeEeccCC--CcHHHHHHHHhhhHhcCCCCCCCeee-c-CchHHHHHHHHHHhccC
Q 047136 46 VYTTDNMRFTVPLEYL--SRNVFIELLRMSEEEFGLPSNGPITL-P-CDSTFLNYVMTLVKGCI 105 (142)
Q Consensus 46 VyVGe~~RfvVp~~yL--~hp~F~~LL~~aeeEfG~~~~G~L~i-P-C~~~~Fe~vl~~i~~~~ 105 (142)
+.|| +++|-+.-..| ..|.|++++...-.| ....|.| + .+...|+.++..+-.+.
T Consensus 34 l~v~-~~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~Ytg~ 92 (127)
T 1r29_A 34 IVVS-REQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFMYTSR 92 (127)
T ss_dssp EEET-TEEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHHHHSC
T ss_pred EEEC-CEEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHHcCCC
Confidence 3444 46788877777 689999999865444 4577999 4 78899999999987654
No 9
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=33.51 E-value=4.2 Score=28.57 Aligned_cols=14 Identities=29% Similarity=0.375 Sum_probs=10.6
Q ss_pred ccCCCcHHHHHHHH
Q 047136 58 LEYLSRNVFIELLR 71 (142)
Q Consensus 58 ~~yL~hp~F~~LL~ 71 (142)
-.|||||.|.-|-.
T Consensus 4 E~YLNHPtFGlLy~ 17 (89)
T 2xko_C 4 ENYLNHPTFGLLYQ 17 (89)
T ss_dssp CCEEEETTTEEEEE
T ss_pred cccccCCccchhhe
Confidence 35999999976644
No 10
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=33.13 E-value=60 Score=21.95 Aligned_cols=53 Identities=15% Similarity=0.230 Sum_probs=40.1
Q ss_pred EEEeccccEEeEeccCCC--cHHHHHHHHhhhHhcCCCCCCCeeec--CchHHHHHHHHHHhccC
Q 047136 45 VVYTTDNMRFTVPLEYLS--RNVFIELLRMSEEEFGLPSNGPITLP--CDSTFLNYVMTLVKGCI 105 (142)
Q Consensus 45 ~VyVGe~~RfvVp~~yL~--hp~F~~LL~~aeeEfG~~~~G~L~iP--C~~~~Fe~vl~~i~~~~ 105 (142)
.+.|| +++|-+.-..|. .|.|++++... ....|.|| .+...|+.++..+-.+.
T Consensus 37 ~l~v~-~~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~iYtg~ 93 (129)
T 3ga1_A 37 SVVVK-GHAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFCYTGR 93 (129)
T ss_dssp EEEET-TEEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHHHHSE
T ss_pred EEEEC-CEEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHHhCCc
Confidence 34444 567777766664 69999999875 45678996 89999999999987653
No 11
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=30.57 E-value=48 Score=25.94 Aligned_cols=63 Identities=11% Similarity=0.162 Sum_probs=44.3
Q ss_pred CCeEEEEeccccEEeEeccCCC-cH--HHHHHHHhhhHhcC--CCCCCCeeecCchHHHHHHHHHHhccC
Q 047136 41 KGHFVVYTTDNMRFTVPLEYLS-RN--VFIELLRMSEEEFG--LPSNGPITLPCDSTFLNYVMTLVKGCI 105 (142)
Q Consensus 41 kG~~~VyVGe~~RfvVp~~yL~-hp--~F~~LL~~aeeEfG--~~~~G~L~iPC~~~~Fe~vl~~i~~~~ 105 (142)
...+.+-|| ++||.+...-|. +| .|..|...- .++. .+.+|.+-|-.|...|++||..++.+.
T Consensus 11 ~~~V~LNVG-G~~F~Tt~sTL~r~PdS~L~~lfs~~-~~~~~~~De~geyFIDRDP~~F~~ILnyLRtG~ 78 (202)
T 3drx_A 11 SKWVRLNVG-GTYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGK 78 (202)
T ss_dssp CCEEEEEET-TEEEEEETTGGGSCTTSSTHHHHSCC-CC----BCTTCCEEECSCSTTHHHHHHHHHHSC
T ss_pred CCEEEEEEC-CEEEEEeHHHHhCCCcchHHHHhcCc-cccCcccCCCccEEecCChHHHHHHHHHhcCCc
Confidence 356777788 688999887764 34 566664321 1232 346789999999999999999998663
No 12
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=28.81 E-value=20 Score=23.61 Aligned_cols=20 Identities=25% Similarity=0.404 Sum_probs=18.4
Q ss_pred cCCCcHHHHHHHHhhhHhcC
Q 047136 59 EYLSRNVFIELLRMSEEEFG 78 (142)
Q Consensus 59 ~yL~hp~F~~LL~~aeeEfG 78 (142)
.||+.-.|++++.++.+||.
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 59999999999999999983
No 13
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=26.30 E-value=4.3 Score=32.94 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=18.9
Q ss_pred CCCCCCCeEEEEeccccEEeEeccCCCcHHH
Q 047136 36 SSVANKGHFVVYTTDNMRFTVPLEYLSRNVF 66 (142)
Q Consensus 36 ~~~vpkG~~~VyVGe~~RfvVp~~yL~hp~F 66 (142)
+..+|+||+|+.-.= +=.-|=..+|+||.|
T Consensus 207 sl~AP~GHLP~~~~l-rGv~l~~~ll~hpa~ 236 (238)
T 1z3x_A 207 DLSAPRGHLPLTNQL-RGVQVLNALLNHPAW 236 (238)
T ss_dssp STTSCTTCCSCCCCT-TCSHHHHHHHTCGGG
T ss_pred eCCCCCCCCCcCccc-ccHHHHHHHHcCccc
Confidence 556899999986421 111233457888876
No 14
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=25.32 E-value=18 Score=23.83 Aligned_cols=20 Identities=45% Similarity=0.624 Sum_probs=18.3
Q ss_pred cCCCcHHHHHHHHhhhHhcC
Q 047136 59 EYLSRNVFIELLRMSEEEFG 78 (142)
Q Consensus 59 ~yL~hp~F~~LL~~aeeEfG 78 (142)
.||+.-.|++++.++.+||-
T Consensus 32 ~yLsdedF~~vFgmsr~eF~ 51 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEFG 51 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHHH
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 59999999999999999983
No 15
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=25.24 E-value=62 Score=21.64 Aligned_cols=55 Identities=11% Similarity=0.141 Sum_probs=39.8
Q ss_pred EEEeccccEEeEeccCCC--cHHHHHHHHhhhHhcCCCCCCCeeec--CchHHHHHHHHHHhccC
Q 047136 45 VVYTTDNMRFTVPLEYLS--RNVFIELLRMSEEEFGLPSNGPITLP--CDSTFLNYVMTLVKGCI 105 (142)
Q Consensus 45 ~VyVGe~~RfvVp~~yL~--hp~F~~LL~~aeeEfG~~~~G~L~iP--C~~~~Fe~vl~~i~~~~ 105 (142)
.+.|| +++|-+.-..|. .|.|++++..... .+..|.+| .+...|+.++..+-.+.
T Consensus 36 ~l~v~-~~~f~aHk~vLaa~S~yF~~~f~~~~~-----e~~~i~l~~~~~~~~f~~~l~~iYtg~ 94 (125)
T 3ohu_A 36 TLIVE-RKEFRAHRAVLAACSEYFWQALVGQTK-----NDLVVSLPEEVTARGFGPLLQFAYTAK 94 (125)
T ss_dssp EEEET-TEEEEECHHHHHHHBHHHHHHHTTCCC-----SSCEEECCTTCCHHHHHHHHHHHTTSE
T ss_pred EEEEC-CEEEechHHHHHHcCHHHHHHhcCCCC-----CCcEEEeCCCCCHHHHHHHHHhHcCCc
Confidence 34444 567777766664 6999999976433 25678887 79999999999987653
No 16
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=24.69 E-value=99 Score=20.34 Aligned_cols=56 Identities=11% Similarity=0.134 Sum_probs=39.1
Q ss_pred EEeccccEEeEeccCC--CcHHHHHHHHhhhHhcCCCCCCCeeec-CchHHHHHHHHHHhccC
Q 047136 46 VYTTDNMRFTVPLEYL--SRNVFIELLRMSEEEFGLPSNGPITLP-CDSTFLNYVMTLVKGCI 105 (142)
Q Consensus 46 VyVGe~~RfvVp~~yL--~hp~F~~LL~~aeeEfG~~~~G~L~iP-C~~~~Fe~vl~~i~~~~ 105 (142)
+.|| +++|-+.-..| ..|.|++++...-.| .....|.++ .+...|+.++..+-.+.
T Consensus 30 l~v~-~~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~ll~~~Yt~~ 88 (120)
T 2if5_A 30 ILVE-GREFPTHRSVLAACSQYFKKLFTSGAVV---DQQNVYEIDFVSAEALTALMDFAYTAT 88 (120)
T ss_dssp EEET-TEEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSSCHHHHHHHHHHHHHSC
T ss_pred EEEC-CEEEeHHHHHHHHhCHHHHHHhcCCccc---cCCceEEeCCCCHHHHHHHHHHHcCCC
Confidence 3344 56787777777 479999999754333 234678888 68999999999987664
No 17
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=24.03 E-value=22 Score=23.38 Aligned_cols=20 Identities=30% Similarity=0.487 Sum_probs=18.6
Q ss_pred cCCCcHHHHHHHHhhhHhcC
Q 047136 59 EYLSRNVFIELLRMSEEEFG 78 (142)
Q Consensus 59 ~yL~hp~F~~LL~~aeeEfG 78 (142)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 31 IYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGSCHHHHHHHTSSCHHHHT
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 59999999999999999984
No 18
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=23.70 E-value=24 Score=24.46 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=18.6
Q ss_pred cCCCcHHHHHHHHhhhHhcC
Q 047136 59 EYLSRNVFIELLRMSEEEFG 78 (142)
Q Consensus 59 ~yL~hp~F~~LL~~aeeEfG 78 (142)
.||+.-.|++++.|+.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 59999999999999999984
No 19
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=23.27 E-value=1.3e+02 Score=20.63 Aligned_cols=49 Identities=12% Similarity=0.267 Sum_probs=35.7
Q ss_pred EEeccccEEeEeccCCCcHHHHHHHHhhhHhcCCC--------C-CCCeeecCchHHHHH
Q 047136 46 VYTTDNMRFTVPLEYLSRNVFIELLRMSEEEFGLP--------S-NGPITLPCDSTFLNY 96 (142)
Q Consensus 46 VyVGe~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~--------~-~G~L~iPC~~~~Fe~ 96 (142)
-|-|+-+||.| +++.+|.|.+|-.+...-||+. . +..|+|.=+....|-
T Consensus 12 ~f~ge~~rf~v--s~~~~~tweel~~mvk~~f~L~~~~ikY~DEenD~v~i~Sq~E~eEA 69 (87)
T 2bkf_A 12 TFKNEIQSFLV--SDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEA 69 (87)
T ss_dssp EETTEEEEEEE--SCGGGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHHHHH
T ss_pred EEcCCeeEEEe--ccCCCCCHHHHHHHHHHHcCCCceEEEEEcCCCCEEEEecHHHHHHH
Confidence 45688889876 6888999999999999999964 2 345677665544443
No 20
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=23.26 E-value=1.2e+02 Score=20.06 Aligned_cols=52 Identities=13% Similarity=0.205 Sum_probs=38.6
Q ss_pred EEeccccEEeEeccCC--CcHHHHHHHHhhhHhcCCCCCCCeeec-CchHHHHHHHHHHhccC
Q 047136 46 VYTTDNMRFTVPLEYL--SRNVFIELLRMSEEEFGLPSNGPITLP-CDSTFLNYVMTLVKGCI 105 (142)
Q Consensus 46 VyVGe~~RfvVp~~yL--~hp~F~~LL~~aeeEfG~~~~G~L~iP-C~~~~Fe~vl~~i~~~~ 105 (142)
+.|| +++|-+.-..| ..|.|++++... . ++.|.|| .+...|+.++..+-.+.
T Consensus 29 l~v~-~~~f~aHk~vLaa~S~yF~~~f~~~-----~--~~~i~l~~~~~~~f~~ll~~iYtg~ 83 (119)
T 3b84_A 29 LDVG-GLVFKAHWSVLACCSHFFQSLYGDG-----S--GGSVVLPAGFAEIFGLLLDFFYTGH 83 (119)
T ss_dssp EEET-TEEEEECHHHHHHHCHHHHHHHTTT-----T--CCCEEECGGGHHHHHHHHHHHHHSC
T ss_pred EEEC-CEEEEeeHHHHhhcCHHHHHHHCCC-----C--CCeEEeCCCCHHHHHHHHHHHcCCC
Confidence 3344 46777777776 479999998762 2 5789998 66889999999988664
No 21
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=23.20 E-value=8.4 Score=28.02 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=10.9
Q ss_pred cCCCcHHHHHHHHh
Q 047136 59 EYLSRNVFIELLRM 72 (142)
Q Consensus 59 ~yL~hp~F~~LL~~ 72 (142)
.|||||.|.-|-.-
T Consensus 28 ~YLNHPTFGLLyrV 41 (112)
T 3n5b_B 28 TYINHPTWGLLYRI 41 (112)
T ss_dssp CEEEETTTEEEEEE
T ss_pred hhccCCccchheee
Confidence 39999999876543
No 22
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=22.65 E-value=30 Score=20.71 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=14.6
Q ss_pred cCCCcHHHHHHHHh----hhHhcC
Q 047136 59 EYLSRNVFIELLRM----SEEEFG 78 (142)
Q Consensus 59 ~yL~hp~F~~LL~~----aeeEfG 78 (142)
..|+.|-|++||+- |.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 46888999999974 445554
No 23
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=21.41 E-value=9.7 Score=30.74 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=20.6
Q ss_pred CCCCCCCeEEEEecc-ccEEeEeccCCCcHHHH
Q 047136 36 SSVANKGHFVVYTTD-NMRFTVPLEYLSRNVFI 67 (142)
Q Consensus 36 ~~~vpkG~~~VyVGe-~~RfvVp~~yL~hp~F~ 67 (142)
+..+|+||+|+.-.= +-| |=..+|+||.|.
T Consensus 199 ~l~AP~GHLP~~~~lrG~~--l~~~ll~hpa~~ 229 (233)
T 1y6i_A 199 DLSAPQGHLPLLNQLRGVR--VAESLYRHPVWS 229 (233)
T ss_dssp STTSCTTCCSCCCCTTCTH--HHHHHHTSTHHH
T ss_pred eCCCCCCCCCCccccchHH--HHHHHHCCcccc
Confidence 556899999986532 223 445688999884
No 24
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=20.86 E-value=52 Score=18.30 Aligned_cols=13 Identities=38% Similarity=0.792 Sum_probs=10.7
Q ss_pred HHHHHHhhhHhcC
Q 047136 66 FIELLRMSEEEFG 78 (142)
Q Consensus 66 F~~LL~~aeeEfG 78 (142)
..+|.+..||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4678888899987
No 25
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=20.46 E-value=1.4e+02 Score=20.67 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=38.8
Q ss_pred cccEEeEeccCCC--cHHHHHHHHhhhHhcCCCCCCCeeec-CchHHHHHHHHHHhccC
Q 047136 50 DNMRFTVPLEYLS--RNVFIELLRMSEEEFGLPSNGPITLP-CDSTFLNYVMTLVKGCI 105 (142)
Q Consensus 50 e~~RfvVp~~yL~--hp~F~~LL~~aeeEfG~~~~G~L~iP-C~~~~Fe~vl~~i~~~~ 105 (142)
++++|-+.-..|. .|.|++++...-.|-. .....|.|| .+...|+.++..+-.+.
T Consensus 55 ~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e-~~~~~I~l~~v~~~~f~~lL~fiYtg~ 112 (144)
T 2ppi_A 55 DGEEIPVQKNILAAASPYIRTKLNYNPPKDD-GSTYKIELEGISVMVMREILDYIFSGQ 112 (144)
T ss_dssp TTEEEEECHHHHHHHCHHHHHHHHHCC------CCCEEECCSSCHHHHHHHHHHHTTSC
T ss_pred CCEEEehHHHHHHHcCHHHHHHHcCCCcccc-CCCcEEEeCCCCHHHHHHHHHHHhCCC
Confidence 4577888777774 8999999976322110 235678887 48999999999998664
Done!