BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047137
(113 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XQ1|A Chain A, X-Ray Structure Of Putative Tropinone Reducatse From
Arabidopsis Thaliana Gene At1g07440
pdb|2Q45|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Putative Tropinone Reductase From Arabidopsis Thaliana
Gene At1g07440
Length = 266
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 63/93 (67%), Gaps = 10/93 (10%)
Query: 7 ELNQRIKEWNSKGLKVSGSVCDLKSRAQREKLAKTVSSVYDGKLNI----------HATT 56
ELN+ + +W KG +V+GSVCD R +REKL +TVSS++ GKL+I T
Sbjct: 50 ELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTL 109
Query: 57 EYTMEDFSTTMTTNFESAYHLSQFAYTLLKASG 89
+YT EDFS ++TN ESAYHLSQ A+ LLKASG
Sbjct: 110 DYTAEDFSFHISTNLESAYHLSQLAHPLLKASG 142
>pdb|1AE1|A Chain A, Tropinone Reductase-I Complex With Nadp
pdb|1AE1|B Chain B, Tropinone Reductase-I Complex With Nadp
Length = 273
Score = 95.1 bits (235), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 62/92 (67%), Gaps = 10/92 (10%)
Query: 7 ELNQRIKEWNSKGLKVSGSVCDLKSRAQREKLAKTVSSVYDGKLNIHATT---------- 56
EL++ ++ W KGL V GSVCDL SR +R+KL +TV+ V+DGKLNI
Sbjct: 57 ELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAK 116
Query: 57 EYTMEDFSTTMTTNFESAYHLSQFAYTLLKAS 88
++T +D++ M TNFE+AYHLSQ AY LLKAS
Sbjct: 117 DFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS 148
>pdb|2AE2|A Chain A, Tropinone Reductase-Ii Complexed With Nadp+ And
Pseudotropine
pdb|2AE2|B Chain B, Tropinone Reductase-Ii Complexed With Nadp+ And
Pseudotropine
pdb|2AE1|A Chain A, Tropinone Reductase-Ii
Length = 260
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 10/92 (10%)
Query: 7 ELNQRIKEWNSKGLKVSGSVCDLKSRAQREKLAKTVSSVYDGKLNIHATT---------- 56
ELN + +W SKG KV SVCDL SR++R++L TV++ + GKLNI
Sbjct: 45 ELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAK 104
Query: 57 EYTMEDFSTTMTTNFESAYHLSQFAYTLLKAS 88
+YT+ED+S M+ NFE+AYHLS A+ LKAS
Sbjct: 105 DYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS 136
>pdb|1IPE|A Chain A, Tropinone Reductase-Ii Complexed With Nadph
pdb|1IPE|B Chain B, Tropinone Reductase-Ii Complexed With Nadph
pdb|1IPF|A Chain A, Tropinone Reductase-Ii Complexed With Nadph And Tropinone
pdb|1IPF|B Chain B, Tropinone Reductase-Ii Complexed With Nadph And Tropinone
Length = 259
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 10/92 (10%)
Query: 7 ELNQRIKEWNSKGLKVSGSVCDLKSRAQREKLAKTVSSVYDGKLNIHATT---------- 56
ELN + +W SKG KV SVCDL SR++R++L TV++ + GKLNI
Sbjct: 44 ELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAK 103
Query: 57 EYTMEDFSTTMTTNFESAYHLSQFAYTLLKAS 88
+YT+ED+S M+ NFE+AYHLS A+ LKAS
Sbjct: 104 DYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS 135
>pdb|3CSD|B Chain B, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To
Nadph And The Inhibitor Emodin
pdb|3CSD|A Chain A, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To
Nadph And The Inhibitor Emodin
pdb|3QRW|A Chain A, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To
Nadph
pdb|3QRW|B Chain B, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To
Nadph
pdb|3RI3|B Chain B, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To
Nadph And The Inhibitor Emodin
pdb|3RI3|A Chain A, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To
Nadph And The Inhibitor Emodin
Length = 281
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 8 LNQRIKEWNSKGLKVSGSVCDLKSRAQREKLAKTVSSVYD---------GKLNIHATTEY 58
L +KE G++ G CD++S + E L V Y G+L AT E
Sbjct: 63 LRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRLGGGATAEL 122
Query: 59 TMEDFSTTMTTNFESAYHLSQFAYTLLKASG 89
E + + TN + +++ +LKA G
Sbjct: 123 ADELWLDVVETNLTGVFRVTK---QVLKAGG 150
>pdb|2RHR|B Chain B, P94l Actinorhodin Ketordeuctase Mutant, With Nadph And
Inhibitor Emodin
pdb|2RHR|A Chain A, P94l Actinorhodin Ketordeuctase Mutant, With Nadph And
Inhibitor Emodin
Length = 277
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 8 LNQRIKEWNSKGLKVSGSVCDLKSRAQREKLAKTVSSVYD---------GKLNIHATTEY 58
L +KE G++ G CD++S + E L V Y G+L AT E
Sbjct: 59 LRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRLGGGATAEL 118
Query: 59 TMEDFSTTMTTNFESAYHLSQFAYTLLKASG 89
E + + TN + +++ +LKA G
Sbjct: 119 ADELWLDVVETNLTGVFRVTK---QVLKAGG 146
>pdb|4DC0|A Chain A, Crystal Structure Of F189w Actinorhodin Polyketide
Ketoreductase With Nadph
pdb|4DC0|B Chain B, Crystal Structure Of F189w Actinorhodin Polyketide
Ketoreductase With Nadph
Length = 281
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 12/91 (13%)
Query: 8 LNQRIKEWNSKGLKVSGSVCDLKSRAQREKLAKTVSSVYD---------GKLNIHATTEY 58
L +KE G++ G CD++S + E L V Y G+ AT E
Sbjct: 63 LRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAEL 122
Query: 59 TMEDFSTTMTTNFESAYHLSQFAYTLLKASG 89
E + + TN + +++ +LKA G
Sbjct: 123 ADELWLDVVETNLTGVFRVTK---QVLKAGG 150
>pdb|4DC1|A Chain A, Crystal Structure Of Y202f Actinorhodin Polyketide
Ketoreductase With Nadph
pdb|4DC1|B Chain B, Crystal Structure Of Y202f Actinorhodin Polyketide
Ketoreductase With Nadph
Length = 281
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 12/91 (13%)
Query: 8 LNQRIKEWNSKGLKVSGSVCDLKSRAQREKLAKTVSSVYD---------GKLNIHATTEY 58
L +KE G++ G CD++S + E L V Y G+ AT E
Sbjct: 63 LRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAEL 122
Query: 59 TMEDFSTTMTTNFESAYHLSQFAYTLLKASG 89
E + + TN + +++ +LKA G
Sbjct: 123 ADELWLDVVETNLTGVFRVTK---QVLKAGG 150
>pdb|1X7G|A Chain A, Actinorhodin Polyketide Ketoreductase, Act Kr, With Nadp
Bound
pdb|1X7G|B Chain B, Actinorhodin Polyketide Ketoreductase, Act Kr, With Nadp
Bound
pdb|1X7H|A Chain A, Actinorhodin Polyketide Ketoreductase, With Nadph Bound
pdb|1X7H|B Chain B, Actinorhodin Polyketide Ketoreductase, With Nadph Bound
pdb|1XR3|A Chain A, Actinorhodin Polyketide Ketoreductase With Nadp And The
Inhibitor Isoniazid Bound
pdb|1XR3|B Chain B, Actinorhodin Polyketide Ketoreductase With Nadp And The
Inhibitor Isoniazid Bound
Length = 261
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 12/91 (13%)
Query: 8 LNQRIKEWNSKGLKVSGSVCDLKSRAQREKLAKTVSSVYD---------GKLNIHATTEY 58
L +KE G++ G CD++S + E L V Y G+ AT E
Sbjct: 43 LRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAEL 102
Query: 59 TMEDFSTTMTTNFESAYHLSQFAYTLLKASG 89
E + + TN + +++ +LKA G
Sbjct: 103 ADELWLDVVETNLTGVFRVTK---QVLKAGG 130
>pdb|1W4Z|A Chain A, Structure Of Actinorhodin Polyketide (Actiii) Reductase
pdb|1W4Z|B Chain B, Structure Of Actinorhodin Polyketide (Actiii) Reductase
Length = 281
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 12/91 (13%)
Query: 8 LNQRIKEWNSKGLKVSGSVCDLKSRAQREKLAKTVSSVYD---------GKLNIHATTEY 58
L +KE G++ G CD++S + E L V Y G+ AT E
Sbjct: 63 LRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAEL 122
Query: 59 TMEDFSTTMTTNFESAYHLSQFAYTLLKASG 89
E + + TN + +++ +LKA G
Sbjct: 123 ADELWLDVVETNLTGVFRVTK---QVLKAGG 150
>pdb|4DBZ|A Chain A, Crystal Structure Of V151l Actinorhodin Polyketide
Ketoreductase With Nadph
pdb|4DBZ|B Chain B, Crystal Structure Of V151l Actinorhodin Polyketide
Ketoreductase With Nadph
Length = 281
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 12/91 (13%)
Query: 8 LNQRIKEWNSKGLKVSGSVCDLKSRAQREKLAKTVSSVYD---------GKLNIHATTEY 58
L +KE G++ G CD++S + E L V Y G+ AT E
Sbjct: 63 LRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAEL 122
Query: 59 TMEDFSTTMTTNFESAYHLSQFAYTLLKASG 89
E + + TN + +++ +LKA G
Sbjct: 123 ADELWLDVVETNLTGVFRVTK---QVLKAGG 150
>pdb|2RH4|A Chain A, Actinorhodin Ketoreductase, Actkr, With Nadph And
Inhibitor Emodin
pdb|2RH4|B Chain B, Actinorhodin Ketoreductase, Actkr, With Nadph And
Inhibitor Emodin
pdb|2RHC|B Chain B, Actinorhodin Ketordeuctase, Actkr, With Nadp+ And
Inhibitor Emodin
pdb|2RHC|A Chain A, Actinorhodin Ketordeuctase, Actkr, With Nadp+ And
Inhibitor Emodin
Length = 277
Score = 30.8 bits (68), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 12/91 (13%)
Query: 8 LNQRIKEWNSKGLKVSGSVCDLKSRAQREKLAKTVSSVYD---------GKLNIHATTEY 58
L +KE G++ G CD++S + E L V Y G+ AT E
Sbjct: 59 LRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAEL 118
Query: 59 TMEDFSTTMTTNFESAYHLSQFAYTLLKASG 89
E + + TN + +++ +LKA G
Sbjct: 119 ADELWLDVVETNLTGVFRVTK---QVLKAGG 146
>pdb|3O4R|A Chain A, Crystal Structure Of Human DehydrogenaseREDUCTASE (SDR
FAMILY) MEMBER 4 (Dhrs4)
pdb|3O4R|B Chain B, Crystal Structure Of Human DehydrogenaseREDUCTASE (SDR
FAMILY) MEMBER 4 (Dhrs4)
pdb|3O4R|C Chain C, Crystal Structure Of Human DehydrogenaseREDUCTASE (SDR
FAMILY) MEMBER 4 (Dhrs4)
pdb|3O4R|D Chain D, Crystal Structure Of Human DehydrogenaseREDUCTASE (SDR
FAMILY) MEMBER 4 (Dhrs4)
Length = 261
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 8 LNQRIKEWNSKGLKVSGSVCDLKSRAQREKLAKTVSSVYDGKLNIHATTEYTMEDFSTTM 67
++Q + +GL V+G+VC + RE+L T ++ G ++I + F + M
Sbjct: 52 VDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLH-GGIDILVSNAAVNPFFGSIM 110
Query: 68 TTNFE 72
E
Sbjct: 111 DVTEE 115
>pdb|2BD0|A Chain A, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
pdb|2BD0|B Chain B, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
pdb|2BD0|C Chain C, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
pdb|2BD0|D Chain D, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
Length = 244
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 54 ATTEYTMEDFSTTMTTNFESAYHLSQFAYTLLK 86
A ++ T EDF TM TN + + L+Q + L++
Sbjct: 101 ALSDLTEEDFDYTMNTNLKGTFFLTQALFALME 133
>pdb|1ZEM|A Chain A, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|B Chain B, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|C Chain C, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|D Chain D, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|E Chain E, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|F Chain F, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|G Chain G, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|H Chain H, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
Length = 262
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 16/73 (21%)
Query: 18 KGLKVSGSVCDLKSRAQREKLAKTVSSVYD--GKLNI-----------HATTEYTMEDFS 64
KG++ VCD+ S E + TV SV GK++ +Y +DF+
Sbjct: 54 KGVEARSYVCDVTSE---EAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFA 110
Query: 65 TTMTTNFESAYHL 77
+T N A+H+
Sbjct: 111 RVLTINVTGAFHV 123
>pdb|4GFJ|A Chain A, Crystal Structure Of Topo-78, An N-Terminal 78kda Fragment
Of Topoisomerase V
Length = 685
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 27 CDLKSRAQ---REKLAKTVSSVYDGKLNIHATTEY-TMEDFSTTMTTNFESAYHLSQFAY 82
C LK + + RE +A ++ +DG +++ ATT Y T++D +T E A +++
Sbjct: 297 CALKLQDRYGIREDVALCLARAFDGSISMIATTPYRTLKDVCPDLT--LEEAKSVNRTLA 354
Query: 83 TLLKASG 89
TL+ G
Sbjct: 355 TLIDEHG 361
>pdb|2CSD|A Chain A, Crystal Structure Of Topoisomerase V (61 Kda Fragment)
pdb|2CSD|B Chain B, Crystal Structure Of Topoisomerase V (61 Kda Fragment)
Length = 519
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 27 CDLKSRAQ---REKLAKTVSSVYDGKLNIHATTEY-TMEDFSTTMTTNFESAYHLSQFAY 82
C LK + + RE +A ++ +DG +++ ATT Y T++D +T E A +++
Sbjct: 297 CALKLQDRYGIREDVALCLARAFDGSISMIATTPYRTLKDVCPDLT--LEEAKSVNRTLA 354
Query: 83 TLLKASG 89
TL+ G
Sbjct: 355 TLIDEHG 361
>pdb|3M6K|A Chain A, Crystal Structure Of N-Terminal 44 Kda Fragment Of
Topoisomerase V In The Presence Of Guanidium
Hydrochloride
pdb|3M6K|B Chain B, Crystal Structure Of N-Terminal 44 Kda Fragment Of
Topoisomerase V In The Presence Of Guanidium
Hydrochloride
pdb|3M6Z|A Chain A, Crystal Structure Of An N-Terminal 44 Kda Fragment Of
Topoisomerase V In The Presence Of Guanidium
Hydrochloride
pdb|3M6Z|B Chain B, Crystal Structure Of An N-Terminal 44 Kda Fragment Of
Topoisomerase V In The Presence Of Guanidium
Hydrochloride
pdb|3M7D|A Chain A, Crystal Structure Of An N-Terminal 44 Kda Fragment Of
Topoisomerase V In The Presence Of Dioxane
Length = 380
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 27 CDLKSRAQ---REKLAKTVSSVYDGKLNIHATTEY-TMEDFSTTMTTNFESAYHLSQFAY 82
C LK + + RE +A ++ +DG +++ ATT Y T++D +T E A +++
Sbjct: 297 CALKLQDRYGIREDVALCLARAFDGSISMIATTPYRTLKDVCPDLT--LEEAKSVNRTLA 354
Query: 83 TLLKASG 89
TL+ G
Sbjct: 355 TLIDEHG 361
>pdb|3KD4|A Chain A, Crystal Structure Of A Putative Protease (Bdi_1141) From
Parabacteroides Distasonis Atcc 8503 At 2.00 A
Resolution
pdb|3KD4|B Chain B, Crystal Structure Of A Putative Protease (Bdi_1141) From
Parabacteroides Distasonis Atcc 8503 At 2.00 A
Resolution
Length = 506
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 2 AALVTELNQRIKEWNSKGLKVSGSVCDLKSRAQREKLAKTVSSVYDGKLN-------IHA 54
AAL T L++R+KE K KS ++EK V+ + D LN A
Sbjct: 213 AALAT-LDKRLKESQGYESKTFAQFLTDKSGNEQEK----VNIIRDHILNNLSTCPIPXA 267
Query: 55 TTEYTMEDFSTTMTTNFESAYHLSQFAYTLLKASG 89
T YT+ D T + + + + ++Q L A+G
Sbjct: 268 XTGYTVRDIDTVLRSAYGTPLEIAQLLNVXLNAAG 302
>pdb|2CSB|A Chain A, Crystal Structure Of Topoisomerase V From Methanopyrus
Kandleri (61 Kda Fragment)
pdb|2CSB|B Chain B, Crystal Structure Of Topoisomerase V From Methanopyrus
Kandleri (61 Kda Fragment)
Length = 519
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 27 CDLKSRAQ---REKLAKTVSSVYDGKLNIHATTEY-TMEDFSTTMTTNFESAYHLSQFAY 82
C LK + + RE +A ++ +DG ++ ATT Y T++D +T E A +++
Sbjct: 297 CALKLQDRYGIREDVALCLARAFDGSISXIATTPYRTLKDVCPDLT--LEEAKSVNRTLA 354
Query: 83 TLLKASG 89
TL+ G
Sbjct: 355 TLIDEHG 361
>pdb|2ZAT|A Chain A, Crystal Structure Of A Mammalian Reductase
pdb|2ZAT|B Chain B, Crystal Structure Of A Mammalian Reductase
pdb|2ZAT|C Chain C, Crystal Structure Of A Mammalian Reductase
pdb|2ZAT|D Chain D, Crystal Structure Of A Mammalian Reductase
Length = 260
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 8 LNQRIKEWNSKGLKVSGSVCDLKSRAQREKLAKTVSSVYDG 48
+++ + +GL V+G+VC + RE+L +++ G
Sbjct: 51 VDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGG 91
>pdb|2QP2|A Chain A, Structure Of A Macpf/perforin-like Protein
Length = 511
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 62 DFSTTMTTNFESAYHLSQFAYTL--LKASGK 90
DF T T+FE+A+ Q+ Y L LK+S +
Sbjct: 139 DFDTDSLTDFENAFSRIQYTYDLYILKSSAE 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.126 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,152,256
Number of Sequences: 62578
Number of extensions: 100034
Number of successful extensions: 310
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 32
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)