BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047139
(611 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 136/441 (30%), Positives = 216/441 (48%), Gaps = 53/441 (12%)
Query: 193 GQLSRNLGTLCNLQTLKLSLNQFSGE-VSDFI--DGLSECINSSSLARLELGYNQLTGNL 249
G++S L L +L+ L LS N SG V ++ DG E L L + N+++G++
Sbjct: 142 GKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGE------LKHLAISGNKISGDV 194
Query: 250 PISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRV 309
+S NL +L++ N+F IP LG+ + L+ L ++ N+++G F + + +++
Sbjct: 195 DVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251
Query: 310 LELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSS-----------------LSFNISFD 352
L +S NQ+ G I L+ SL+ LSL + + LS N +
Sbjct: 252 LNISSNQFVGPIPPLPLK---SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Query: 353 WIPPF-----KLRYLVIRYYQLGPKFPT-WLRNQTELTTLVLNSASISDTLPSWFLQLNL 406
+PPF L L + + P L L L L+ S LP L+
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368
Query: 407 TLDELDVGGNHLSGRIPNTLVFRFPGSVD---LSSNRFEGPIPLWSSNLTKLYLRDLDIS 463
+L LD+ N+ SG I L ++ L +N F G IP SN ++L L +S
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV--SLHLS 426
Query: 464 FNSINGSIPQSVGNLKQLLTLVIXXXXXXXXXXXXXXGEIPESIGSLLTIRFLVLSNNHL 523
FN ++G+IP S+G+L +L L + GEIP+ + + T+ L+L N L
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLE--------GEIPQELMYVKTLETLILDFNDL 478
Query: 524 SGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKL 583
+GEIP L NC+ ++ + L N+L+G IP WIG + +L+IL+L +N F+G IP+EL
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDC 537
Query: 584 SALHILDLSHNNLLGPIPYCV 604
+L LDL+ N G IP +
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAM 558
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 127/420 (30%), Positives = 190/420 (45%), Gaps = 66/420 (15%)
Query: 205 LQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN----LR 260
L+ L LS N+FSGE+ + + LS +SL L+L N +G PI +N L+
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLS-----ASLLTLDLSSNNFSG--PILPNLCQNPKNTLQ 397
Query: 261 YLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGF 320
L L N F G IPP+L N + L L+L+ N ++G P S G LS +R L+L N EG
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 321 ITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQ 380
I +EL +KT L L++ + L + P+ L N
Sbjct: 458 IP----------QELMYVKT------------------LETLILDFNDLTGEIPSGLSNC 489
Query: 381 TELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLV-FRFPGSVDLSSN 439
T L + L++ ++ +P W +L L L + N SG IP L R +DL++N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Query: 440 RFEGPIPLWSSNLTKLYLRDLDISFNSINGSI------------PQSVGNLKQLLTLV-- 485
F G IP ++ + I+ N I G GNL + +
Sbjct: 549 LFNGTIP------AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602
Query: 486 ----IXXXXXXXXXXXXXXGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLD 541
+ G + + ++ FL +S N LSG IP + + + L+
Sbjct: 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662
Query: 542 LGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIP 601
LG N +SG+IP +G+ + L+IL L SN +G IP + L+ L +DLS+NNL GPIP
Sbjct: 663 LGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 133/391 (34%), Positives = 176/391 (45%), Gaps = 50/391 (12%)
Query: 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN 258
LG LQ L +S N+ SG DF +S C + L L + NQ G PI LK+
Sbjct: 219 LGDCSALQHLDISGNKLSG---DFSRAISTC---TELKLLNISSNQFVG--PIPPLPLKS 270
Query: 259 LRYLELWYNSFLGSIPPSL-GNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317
L+YL L N F G IP L G L L L+ N G P FG S + L LS N +
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 318 EGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWL 377
G + L + L+ L L SFN + + P L
Sbjct: 331 SGELPMDTLLKMRGLKVLDL--------SFN-------------------EFSGELPESL 363
Query: 378 RN-QTELTTLVLNSASISD-TLPSWFLQLNLTLDELDVGGNHLSGRIPNTLV-FRFPGSV 434
N L TL L+S + S LP+ TL EL + N +G+IP TL S+
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423
Query: 435 DLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVIXXXXXXXX 494
LS N G IP +L+KL RDL + N + G IPQ + +K L TL++
Sbjct: 424 HLSFNYLSGTIPSSLGSLSKL--RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT-- 479
Query: 495 XXXXXXGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAW 554
GEIP + + + ++ LSNN L+GEIP + + L L N SGNIPA
Sbjct: 480 ------GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533
Query: 555 IGESMPSLSILRLRSNHFNGTIPSELCKLSA 585
+G+ SL L L +N FNGTIP+ + K S
Sbjct: 534 LGDCR-SLIWLDLNTNLFNGTIPAAMFKQSG 563
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 145/346 (41%), Gaps = 60/346 (17%)
Query: 190 FLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNL 249
+L G + +LG+L L+ LKL LN GE+ E + +L L L +N LTG +
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ------ELMYVKTLETLILDFNDLTGEI 482
Query: 250 PISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRV 309
P L NL ++ L N G IP +G L L L L++N +G P G ++
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542
Query: 310 LELSDNQWEGFITDAHLR-------NLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYL 362
L+L+ N + G I A + N + + IK + + + L +
Sbjct: 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL-----LEFQ 597
Query: 363 VIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRI 422
IR QL + T RN +T+ V G H S
Sbjct: 598 GIRSEQLN-RLST--RNPCNITSRVY--------------------------GGHTSPTF 628
Query: 423 PNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLL 482
N F +D+S N G IP ++ L++ L++ N I+GSIP VG+L+ L
Sbjct: 629 DNNGSMMF---LDMSYNMLSGYIPKEIGSMPYLFI--LNLGHNDISGSIPDEVGDLRGLN 683
Query: 483 TLVIXXXXXXXXXXXXXXGEIPESIGSLLTIRFLVLSNNHLSGEIP 528
L + G IP+++ +L + + LSNN+LSG IP
Sbjct: 684 ILDL--------SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 156/357 (43%), Gaps = 41/357 (11%)
Query: 130 NNFKVLDLSNNGFNSTLPHWLFNITXXXXXXXXXXXXQGDIPDGFXXXXXXXXXXXXXXX 189
N + L L NNGF +P L N + G IP
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN- 452
Query: 190 FLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNL 249
LEG++ + L + L+TL L N +GE+ GLS C N L + L N+LTG +
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPS---GLSNCTN---LNWISLSNNRLTGEI 506
Query: 250 PISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPES-FGQLSAIR 308
P +G L+NL L+L NSF G+IP LG+ L L L +N NG P + F Q I
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566
Query: 309 VLELSDNQW-----EGFITDAH-LRNLTSL-----EELSLIKTSNSSLSFNISFDWIPPF 357
++ ++ +G + H NL E+L+ + T N
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC------------- 613
Query: 358 KLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNH 417
+ R Y G PT+ N + L ++ +S +P + L L++G N
Sbjct: 614 ---NITSRVYG-GHTSPTF-DNNGSMMFLDMSYNMLSGYIPKEIGSMPY-LFILNLGHND 667
Query: 418 LSGRIPNTLV-FRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQ 473
+SG IP+ + R +DLSSN+ +G IP S LT L ++D+S N+++G IP+
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT--MLTEIDLSNNNLSGPIPE 722
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 98/331 (29%), Positives = 143/331 (43%), Gaps = 46/331 (13%)
Query: 287 YLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLS 346
+L+++ +NG F +++ L+LS N G +T L +L S L + S+++L
Sbjct: 83 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVT--TLTSLGSCSGLKFLNVSSNTLD 139
Query: 347 FNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNL 406
F P K+ G K N E+ L NS S ++ + W L
Sbjct: 140 F--------PGKVSG--------GLKL-----NSLEVLDLSANSISGANVV-GWVLSDGC 177
Query: 407 -TLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFN 465
L L + GN +SG + + +D+SSN F IP L+ LDIS N
Sbjct: 178 GELKHLAISGNKISGDVDVSRCVNLE-FLDVSSNNFSTGIPFLGDCSA---LQHLDISGN 233
Query: 466 SINGSIPQSVGNLKQLLTLVIXXXXXX--------------XXXXXXXXGEIPESI-GSL 510
++G +++ +L L I GEIP+ + G+
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGAC 293
Query: 511 LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSN 570
T+ L LS NH G +PP +CSL++SL L N SG +P M L +L L N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 571 HFNGTIPSELCKLSA-LHILDLSHNNLLGPI 600
F+G +P L LSA L LDLS NN GPI
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 136/441 (30%), Positives = 216/441 (48%), Gaps = 53/441 (12%)
Query: 193 GQLSRNLGTLCNLQTLKLSLNQFSGE-VSDFI--DGLSECINSSSLARLELGYNQLTGNL 249
G++S L L +L+ L LS N SG V ++ DG E L L + N+++G++
Sbjct: 139 GKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGE------LKHLAISGNKISGDV 191
Query: 250 PISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRV 309
+S NL +L++ N+F IP LG+ + L+ L ++ N+++G F + + +++
Sbjct: 192 DVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 248
Query: 310 LELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSS-----------------LSFNISFD 352
L +S NQ+ G I L+ SL+ LSL + + LS N +
Sbjct: 249 LNISSNQFVGPIPPLPLK---SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 305
Query: 353 WIPPF-----KLRYLVIRYYQLGPKFPT-WLRNQTELTTLVLNSASISDTLPSWFLQLNL 406
+PPF L L + + P L L L L+ S LP L+
Sbjct: 306 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 365
Query: 407 TLDELDVGGNHLSGRIPNTLVFRFPGSVD---LSSNRFEGPIPLWSSNLTKLYLRDLDIS 463
+L LD+ N+ SG I L ++ L +N F G IP SN ++L L +S
Sbjct: 366 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV--SLHLS 423
Query: 464 FNSINGSIPQSVGNLKQLLTLVIXXXXXXXXXXXXXXGEIPESIGSLLTIRFLVLSNNHL 523
FN ++G+IP S+G+L +L L + GEIP+ + + T+ L+L N L
Sbjct: 424 FNYLSGTIPSSLGSLSKLRDLKLWLNMLE--------GEIPQELMYVKTLETLILDFNDL 475
Query: 524 SGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKL 583
+GEIP L NC+ ++ + L N+L+G IP WIG + +L+IL+L +N F+G IP+EL
Sbjct: 476 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDC 534
Query: 584 SALHILDLSHNNLLGPIPYCV 604
+L LDL+ N G IP +
Sbjct: 535 RSLIWLDLNTNLFNGTIPAAM 555
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 127/420 (30%), Positives = 190/420 (45%), Gaps = 66/420 (15%)
Query: 205 LQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN----LR 260
L+ L LS N+FSGE+ + + LS +SL L+L N +G PI +N L+
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLS-----ASLLTLDLSSNNFSG--PILPNLCQNPKNTLQ 394
Query: 261 YLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGF 320
L L N F G IPP+L N + L L+L+ N ++G P S G LS +R L+L N EG
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 321 ITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQ 380
I +EL +KT L L++ + L + P+ L N
Sbjct: 455 IP----------QELMYVKT------------------LETLILDFNDLTGEIPSGLSNC 486
Query: 381 TELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLV-FRFPGSVDLSSN 439
T L + L++ ++ +P W +L L L + N SG IP L R +DL++N
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 545
Query: 440 RFEGPIPLWSSNLTKLYLRDLDISFNSINGSI------------PQSVGNLKQLLTLV-- 485
F G IP ++ + I+ N I G GNL + +
Sbjct: 546 LFNGTIP------AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 599
Query: 486 ----IXXXXXXXXXXXXXXGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLD 541
+ G + + ++ FL +S N LSG IP + + + L+
Sbjct: 600 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 659
Query: 542 LGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIP 601
LG N +SG+IP +G+ + L+IL L SN +G IP + L+ L +DLS+NNL GPIP
Sbjct: 660 LGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 133/391 (34%), Positives = 176/391 (45%), Gaps = 50/391 (12%)
Query: 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN 258
LG LQ L +S N+ SG DF +S C + L L + NQ G PI LK+
Sbjct: 216 LGDCSALQHLDISGNKLSG---DFSRAISTC---TELKLLNISSNQFVG--PIPPLPLKS 267
Query: 259 LRYLELWYNSFLGSIPPSL-GNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317
L+YL L N F G IP L G L L L+ N G P FG S + L LS N +
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 318 EGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWL 377
G + L + L+ L L SFN + + P L
Sbjct: 328 SGELPMDTLLKMRGLKVLDL--------SFN-------------------EFSGELPESL 360
Query: 378 RN-QTELTTLVLNSASISD-TLPSWFLQLNLTLDELDVGGNHLSGRIPNTLV-FRFPGSV 434
N L TL L+S + S LP+ TL EL + N +G+IP TL S+
Sbjct: 361 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 420
Query: 435 DLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVIXXXXXXXX 494
LS N G IP +L+KL RDL + N + G IPQ + +K L TL++
Sbjct: 421 HLSFNYLSGTIPSSLGSLSKL--RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT-- 476
Query: 495 XXXXXXGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAW 554
GEIP + + + ++ LSNN L+GEIP + + L L N SGNIPA
Sbjct: 477 ------GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 530
Query: 555 IGESMPSLSILRLRSNHFNGTIPSELCKLSA 585
+G+ SL L L +N FNGTIP+ + K S
Sbjct: 531 LGDCR-SLIWLDLNTNLFNGTIPAAMFKQSG 560
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 145/346 (41%), Gaps = 60/346 (17%)
Query: 190 FLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNL 249
+L G + +LG+L L+ LKL LN GE+ E + +L L L +N LTG +
Sbjct: 426 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ------ELMYVKTLETLILDFNDLTGEI 479
Query: 250 PISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRV 309
P L NL ++ L N G IP +G L L L L++N +G P G ++
Sbjct: 480 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 539
Query: 310 LELSDNQWEGFITDAHLR-------NLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYL 362
L+L+ N + G I A + N + + IK + + + L +
Sbjct: 540 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL-----LEFQ 594
Query: 363 VIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRI 422
IR QL + T RN +T+ V G H S
Sbjct: 595 GIRSEQLN-RLST--RNPCNITSRVY--------------------------GGHTSPTF 625
Query: 423 PNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLL 482
N F +D+S N G IP ++ L++ L++ N I+GSIP VG+L+ L
Sbjct: 626 DNNGSMMF---LDMSYNMLSGYIPKEIGSMPYLFI--LNLGHNDISGSIPDEVGDLRGLN 680
Query: 483 TLVIXXXXXXXXXXXXXXGEIPESIGSLLTIRFLVLSNNHLSGEIP 528
L + G IP+++ +L + + LSNN+LSG IP
Sbjct: 681 ILDL--------SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 101/353 (28%), Positives = 150/353 (42%), Gaps = 33/353 (9%)
Query: 130 NNFKVLDLSNNGFNSTLPHWLFNITXXXXXXXXXXXXQGDIPDGFXXXXXXXXXXXXXXX 189
N + L L NNGF +P L N + G IP
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN- 449
Query: 190 FLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNL 249
LEG++ + L + L+TL L N +GE+ GLS C N L + L N+LTG +
Sbjct: 450 MLEGEIPQELMYVKTLETLILDFNDLTGEIPS---GLSNCTN---LNWISLSNNRLTGEI 503
Query: 250 PISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPES-FGQLSAIR 308
P +G L+NL L+L NSF G+IP LG+ L L L +N NG P + F Q I
Sbjct: 504 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 563
Query: 309 VLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIR--- 365
++ ++ D + L + F I +L L R
Sbjct: 564 ANFIAGKRYVYIKNDGMKKECHGAGNL-------------LEFQGIRSEQLNRLSTRNPC 610
Query: 366 ----YYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGR 421
G PT+ N + L ++ +S +P + L L++G N +SG
Sbjct: 611 NITSRVYGGHTSPTF-DNNGSMMFLDMSYNMLSGYIPKEIGSMPY-LFILNLGHNDISGS 668
Query: 422 IPNTLV-FRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQ 473
IP+ + R +DLSSN+ +G IP S LT L ++D+S N+++G IP+
Sbjct: 669 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT--MLTEIDLSNNNLSGPIPE 719
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 98/331 (29%), Positives = 143/331 (43%), Gaps = 46/331 (13%)
Query: 287 YLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLS 346
+L+++ +NG F +++ L+LS N G +T L +L S L + S+++L
Sbjct: 80 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTT--LTSLGSCSGLKFLNVSSNTLD 136
Query: 347 FNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNL 406
F P K+ G K N E+ L NS S ++ + W L
Sbjct: 137 F--------PGKVSG--------GLKL-----NSLEVLDLSANSISGANVV-GWVLSDGC 174
Query: 407 -TLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFN 465
L L + GN +SG + + +D+SSN F IP L+ LDIS N
Sbjct: 175 GELKHLAISGNKISGDVDVSRCVNLE-FLDVSSNNFSTGIPFLGDCSA---LQHLDISGN 230
Query: 466 SINGSIPQSVGNLKQLLTLVIXXXXXX--------------XXXXXXXXGEIPESI-GSL 510
++G +++ +L L I GEIP+ + G+
Sbjct: 231 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGAC 290
Query: 511 LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSN 570
T+ L LS NH G +PP +CSL++SL L N SG +P M L +L L N
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 571 HFNGTIPSELCKLSA-LHILDLSHNNLLGPI 600
F+G +P L LSA L LDLS NN GPI
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPI 381
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 99/219 (45%), Gaps = 36/219 (16%)
Query: 408 LDELDVGG-NHLSGRIPNTLV-FRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFN 465
L+ L +GG N+L G IP + + ++ G IP + S + L LD S+N
Sbjct: 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV--TLDFSYN 135
Query: 466 SINGSIPQSVGNLKQLLTLVIXXXXXXXXXXXXXXGEIPESIGSLLTI-RFLVLSNNHLS 524
+++G++P S+ +L L+ + G IP+S GS + + +S N L+
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRIS--------GAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 525 GEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSI-------------------- 564
G+IPP+ N +L +DL N L G+ G + I
Sbjct: 188 GKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246
Query: 565 --LRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIP 601
L LR+N GT+P L +L LH L++S NNL G IP
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 117/310 (37%), Gaps = 42/310 (13%)
Query: 39 CKEVEREALLQFKQNLTDPSGRLSSWV-GEDCC--SWRGVGCNNRTGSIIM-------LN 88
C +++ALLQ K++L +P+ LSSW+ DCC +W GV C+ T + + LN
Sbjct: 3 CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 89 LNNPFR--------DSFDSYEDDAVHELRGKISPXXXXXXXXXXXXXXXNNFK------- 133
L P+ + ++ L G I P N
Sbjct: 62 LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
Query: 134 -------VLDLSNNGFNSTLPHWLFNITXXXXXXXXXXXXQGDIPDGFXXXXXXXXXXXX 186
LD S N + TLP + ++ G IPD +
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 187 XXXFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLT 246
L G++ L NL + LS N G+ S + + ++ L N L
Sbjct: 182 SRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFG------SDKNTQKIHLAKNSLA 234
Query: 247 GNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSA 306
+L +G KNL L+L N G++P L L FL L ++ N + G+ P+ G L
Sbjct: 235 FDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQR 292
Query: 307 IRVLELSDNQ 316
V ++N+
Sbjct: 293 FDVSAYANNK 302
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 78/176 (44%), Gaps = 11/176 (6%)
Query: 424 NTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDIS-FNSINGSIPQSVGNLKQLL 482
+T +R ++DLS P P+ SS YL L I N++ G IP ++ L QL
Sbjct: 46 DTQTYRV-NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104
Query: 483 TLVIXXXXXXXXXXXXXXGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDL 542
L I G IP+ + + T+ L S N LSG +PPS+ + + +
Sbjct: 105 YLYITHTNVS--------GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156
Query: 543 GENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLG 598
N++SG IP G + + + N G IP L+ L +DLS N L G
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 104/243 (42%), Gaps = 36/243 (14%)
Query: 241 GYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPES 300
G N L G +P ++ L L YL + + + G+IP L + L L + N ++G P S
Sbjct: 85 GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 301 FGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLR 360
L + + N+ G I D++ S + TS ++S N IPP
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSY-------GSFSKLFTS-MTISRNRLTGKIPP---- 192
Query: 361 YLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVG-GNHLS 419
+ L F RN E VL S +T + +L D VG +L+
Sbjct: 193 ----TFANLNLAFVDLSRNMLEGDASVL-FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247
Query: 420 GRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKL-YLRDLDISFNSINGSIPQSVGNL 478
G +DL +NR G +P LT+L +L L++SFN++ G IPQ GNL
Sbjct: 248 G-------------LDLRNNRIYGTLP---QGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290
Query: 479 KQL 481
++
Sbjct: 291 QRF 293
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 503 IPESIGSLLTIRFLVLSN-NHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPS 561
IP S+ +L + FL + N+L G IPP++ + + L + +SG IP ++ + + +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKT 126
Query: 562 LSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAM 610
L L N +GT+P + L L + N + G IP G FS +
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 212 LNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLG 271
+N G + I L++ L L + + ++G +P L +K L L+ YN+ G
Sbjct: 86 INNLVGPIPPAIAKLTQ------LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG 139
Query: 272 SIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRV-LELSDNQWEGFI 321
++PPS+ +L L + N+++G P+S+G S + + +S N+ G I
Sbjct: 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 70/140 (50%), Gaps = 14/140 (10%)
Query: 202 LCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRY 261
L NL+TL ++ N+ D L +LA L L NQL P L L Y
Sbjct: 84 LKNLETLWVTDNKLQALPIGVFDQLV------NLAELRLDRNQLKSLPPRVFDSLTKLTY 137
Query: 262 LELWYNSFLGSIPPSL-GNLTFLEELYLTSNQMNGKFPE-SFGQLSAIRVLELSDNQWEG 319
L L YN L S+P + LT L+EL L +NQ+ + PE +F +L+ ++ L+L +NQ +
Sbjct: 138 LSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKR 195
Query: 320 FITDAHLRNLTSLEELSLIK 339
A SLE+L +++
Sbjct: 196 VPEGA----FDSLEKLKMLQ 211
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 202 LCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRY 261
L NL L+L NQ D L++ L L LGYN+L L +L+
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTK------LTYLSLGYNELQSLPKGVFDKLTSLKE 161
Query: 262 LELWYNSFLGSIPP-SLGNLTFLEELYLTSNQMNGKFPE-SFGQLSAIRVLELSDNQWE 318
L L YN+ L +P + LT L+ L L +NQ+ + PE +F L +++L+L +N W+
Sbjct: 162 LRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD 218
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 8/154 (5%)
Query: 270 LGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNL 329
L +IP ++ T ++L L SN+++ ++F +L+ +R+L L+DN+ + + L
Sbjct: 28 LTAIPSNIPADT--KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA-GIFKEL 84
Query: 330 TSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLN 389
+LE L + +L + FD + L L + QL P + T+LT L L
Sbjct: 85 KNLETLWVTDNKLQALPIGV-FDQL--VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141
Query: 390 SASISDTLPSWFLQLNLTLDELDVGGNHLSGRIP 423
+ +LP +L EL + N L R+P
Sbjct: 142 YNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVP 173
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 11/129 (8%)
Query: 190 FLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNL 249
F +++N+ +L +TL +SLN + D C + S+ L L N LTG++
Sbjct: 393 FKVALMTKNMSSL---ETLDVSLNSLNSHAYD-----RTCAWAESILVLNLSSNMLTGSV 444
Query: 250 PISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRV 309
L ++ L+L +N+ + SIP + +L L+EL + SNQ+ F +L++++
Sbjct: 445 FRCLP--PKVKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQY 501
Query: 310 LELSDNQWE 318
+ L DN W+
Sbjct: 502 IWLHDNPWD 510
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN 258
L L L LKL NQ S +S ++L LEL NQL PIS LKN
Sbjct: 256 LSGLTKLTELKLGANQISN--------ISPLAGLTALTNLELNENQLEDISPIS--NLKN 305
Query: 259 LRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 318
L YL L++N+ + I P + +LT L+ L+ ++N+++ S L+ I L NQ
Sbjct: 306 LTYLTLYFNN-ISDISP-VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQIS 361
Query: 319 GFITDAHLRNLTSL 332
A+L +T L
Sbjct: 362 DLTPLANLTRITQL 375
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN 258
L L NL++L + NQ S I L N L L L NQL +L L N
Sbjct: 190 LAKLTNLESLIATNNQISD-----ITPLGILTN---LDELSLNGNQLKD--IGTLASLTN 239
Query: 259 LRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 318
L L+L N P L LT L EL L +NQ++ P L+A+ LEL++NQ E
Sbjct: 240 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 295
Query: 319 GFITDAHLRNLTSL 332
++L+NLT L
Sbjct: 296 DISPISNLKNLTYL 309
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 20/140 (14%)
Query: 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN 258
L L NL L L F+ +++D ID L N L RLEL N ++ + L
Sbjct: 103 LANLTNLTGLTL----FNNQITD-IDPLKNLTN---LNRLELSSNTIS-----DISALSG 149
Query: 259 LRYLE-LWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317
L L+ L + + + + P L NLT LE L ++SN+++ +L+ + L ++NQ
Sbjct: 150 LTSLQQLNFGNQVTDLKP-LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQI 206
Query: 318 EGFITDAHLRNLTSLEELSL 337
L LT+L+ELSL
Sbjct: 207 SDI---TPLGILTNLDELSL 223
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN 258
L L L LKL NQ S +S ++L LEL NQL PIS LKN
Sbjct: 257 LSGLTKLTELKLGANQISN--------ISPLAGLTALTNLELNENQLEDISPIS--NLKN 306
Query: 259 LRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 318
L YL L++N+ + I P + +LT L+ L+ ++N+++ S L+ I L NQ
Sbjct: 307 LTYLTLYFNN-ISDISP-VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQIS 362
Query: 319 GFITDAHLRNLTSL 332
A+L +T L
Sbjct: 363 DLTPLANLTRITQL 376
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN 258
L L NL++L + NQ S I L N L L L NQL +L L N
Sbjct: 191 LAKLTNLESLIATNNQISD-----ITPLGILTN---LDELSLNGNQLKD--IGTLASLTN 240
Query: 259 LRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 318
L L+L N P L LT L EL L +NQ++ P L+A+ LEL++NQ E
Sbjct: 241 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 296
Query: 319 GFITDAHLRNLTSL 332
++L+NLT L
Sbjct: 297 DISPISNLKNLTYL 310
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN 258
L L NL L L F+ +++D ID L N L RLEL N ++ +L L +
Sbjct: 103 LANLTNLTGLTL----FNNQITD-IDPLKNLTN---LNRLELSSNTISD--ISALSGLTS 152
Query: 259 LRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 318
L+ L N P L NLT LE L ++SN+++ +L+ + L ++NQ
Sbjct: 153 LQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQIS 208
Query: 319 GFITDAHLRNLTSLEELSL 337
L LT+L+ELSL
Sbjct: 209 DI---TPLGILTNLDELSL 224
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN 258
L L L LKL NQ S +S ++L LEL NQL PIS LKN
Sbjct: 260 LSGLTKLTELKLGANQISN--------ISPLAGLTALTNLELNENQLEDISPIS--NLKN 309
Query: 259 LRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 318
L YL L++N+ + I P + +LT L+ L+ +N+++ S L+ I L NQ
Sbjct: 310 LTYLTLYFNN-ISDISP-VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQIS 365
Query: 319 GFITDAHLRNLTSL 332
A+L +T L
Sbjct: 366 DLTPLANLTRITQL 379
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN 258
L L NL++L + NQ S I L N L L L NQL +L L N
Sbjct: 194 LAKLTNLESLIATNNQISD-----ITPLGILTN---LDELSLNGNQLKD--IGTLASLTN 243
Query: 259 LRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 318
L L+L N P L LT L EL L +NQ++ P L+A+ LEL++NQ E
Sbjct: 244 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 299
Query: 319 GFITDAHLRNLTSL 332
++L+NLT L
Sbjct: 300 DISPISNLKNLTYL 313
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 20/140 (14%)
Query: 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN 258
L L NL L L F+ +++D ID L N L RLEL N ++ + L
Sbjct: 107 LANLTNLTGLTL----FNNQITD-IDPLKNLTN---LNRLELSSNTIS-----DISALSG 153
Query: 259 LRYLE-LWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317
L L+ L + + + + P L NLT LE L ++SN+++ +L+ + L ++NQ
Sbjct: 154 LTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQI 210
Query: 318 EGFITDAHLRNLTSLEELSL 337
L LT+L+ELSL
Sbjct: 211 SDI---TPLGILTNLDELSL 227
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN 258
L L NL L L+ NQ + D L+ +L L L NQL L N
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLT------NLKELVLVENQLQSLPDGVFDKLTN 134
Query: 259 LRYLELWYNSFLGSIPPSL-GNLTFLEELYLTSNQMNGKFPES-FGQLSAIRVLELSDNQ 316
L YL L++N L S+P + LT L L L +NQ+ PE F +L+ ++ L L+DNQ
Sbjct: 135 LTYLYLYHNQ-LQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQ 192
Query: 317 WEGFITDAHLRNLTSLEELSLI 338
+ + D LTSL + L+
Sbjct: 193 LKS-VPDGVFDRLTSLTHIWLL 213
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 253 LGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLEL 312
+ YL N+RYL L N L I +L LT L L LT NQ+ F +L+ ++ L L
Sbjct: 59 IQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 313 SDNQWEGFITDAHLRNLTSLEELSLIKTSNSSL 345
+NQ + + D LT+L L L SL
Sbjct: 117 VENQLQS-LPDGVFDKLTNLTYLYLYHNQLQSL 148
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 202 LCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRY 261
L NL+ L L NQ D L+ +L L L +NQL L NL
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLT------NLTYLYLYHNQLQSLPKGVFDKLTNLTR 161
Query: 262 LELWYNSFLGSIPPSL-GNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGF 320
L+L N+ L S+P + LT L++L L NQ+ F +L+++ + L +N W+
Sbjct: 162 LDL-DNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCA 220
Query: 321 ITD 323
+D
Sbjct: 221 CSD 223
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 8/129 (6%)
Query: 201 TLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLR 260
+L NL+ L L NQ D L++ L L+LG NQLT L +L+
Sbjct: 62 SLINLKELYLGSNQLGALPVGVFDSLTQ------LTVLDLGTNQLTVLPSAVFDRLVHLK 115
Query: 261 YLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGF 320
L + N L +P + LT L L L NQ+ +F +LS++ L N W+
Sbjct: 116 ELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174
Query: 321 ITD-AHLRN 328
D +LRN
Sbjct: 175 CRDIMYLRN 183
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 251 ISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVL 310
+ G N + L L N P +L L+ELYL SNQ+ F L+ + VL
Sbjct: 34 VPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL 93
Query: 311 ELSDNQWEGFITDAHLRNLTSLEEL 335
+L NQ + A L L+EL
Sbjct: 94 DLGTNQLT-VLPSAVFDRLVHLKEL 117
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 202 LCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRY 261
L NL+ L L NQ D L+ +L L L +NQL L NL
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLT------NLTYLNLAHNQLQSLPKGVFDKLTNLTE 161
Query: 262 LELWYNSFLGSIPPSL-GNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 318
L+L YN L S+P + LT L++L L NQ+ F +L++++ + L DN W+
Sbjct: 162 LDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 253 LGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLEL 312
+ YL N+RYL L N L I +L LT L L LT NQ+ F +L+ ++ L L
Sbjct: 59 IQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 313 SDNQWEGFITDAHLRNLTSLEELSLIKTSNSSL 345
+NQ + + D LT+L L+L SL
Sbjct: 117 VENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSL 148
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 506 SIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSIL 565
++ L + +L+L+ N L + + L L ENQL +P + + + +L+ L
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYL 138
Query: 566 RLRSNHFNGTIPSELCKLSALHILDLSHNNL 596
L N KL+ L LDLS+N L
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN 258
L L NL++L + NQ S I L N L L L NQL +L L N
Sbjct: 195 LAKLTNLESLIATNNQISD-----ITPLGILTN---LDELSLNGNQLKD--IGTLASLTN 244
Query: 259 LRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 318
L L+L N P L LT L EL L +NQ++ P L+A+ LEL++NQ E
Sbjct: 245 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 300
Query: 319 GFITDAHLRNLTSL 332
++L+NLT L
Sbjct: 301 DISPISNLKNLTYL 314
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 20/140 (14%)
Query: 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN 258
L L NL L L F+ +++D ID L N L RLEL N ++ + L
Sbjct: 108 LANLTNLTGLTL----FNNQITD-IDPLKNLTN---LNRLELSSNTIS-----DISALSG 154
Query: 259 LRYLE-LWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317
L L+ L + + + + P L NLT LE L ++SN+++ +L+ + L ++NQ
Sbjct: 155 LTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQI 211
Query: 318 EGFITDAHLRNLTSLEELSL 337
L LT+L+ELSL
Sbjct: 212 SDI---TPLGILTNLDELSL 228
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN 258
L L NL++L + NQ S I L N L L L NQL +L L N
Sbjct: 191 LAKLTNLESLIATNNQISD-----ITPLGILTN---LDELSLNGNQLKD--IGTLASLTN 240
Query: 259 LRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 318
L L+L N P L LT L EL L +NQ++ P L+A+ LEL++NQ E
Sbjct: 241 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 296
Query: 319 GFITDAHLRNLTSL 332
++L+NLT L
Sbjct: 297 DISPISNLKNLTYL 310
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN 258
L L NL L L F+ +++D ID L N L RLEL N ++ +L L +
Sbjct: 103 LANLTNLTGLTL----FNNQITD-IDPLKNLTN---LNRLELSSNTISD--ISALSGLTS 152
Query: 259 LRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 318
L+ L N P L NLT LE L ++SN+++ +L+ + L ++NQ
Sbjct: 153 LQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQIS 208
Query: 319 GFITDAHLRNLTSLEELSL 337
L LT+L+ELSL
Sbjct: 209 DI---TPLGILTNLDELSL 224
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN 258
L L NL++L + NQ S I L N L L L NQL +L L N
Sbjct: 190 LAKLTNLESLIATNNQISD-----ITPLGILTN---LDELSLNGNQLKD--IGTLASLTN 239
Query: 259 LRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 318
L L+L N P L LT L EL L +NQ++ P L+A+ LEL++NQ E
Sbjct: 240 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 295
Query: 319 GFITDAHLRNLTSL 332
++L+NLT L
Sbjct: 296 DISPISNLKNLTYL 309
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 20/140 (14%)
Query: 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN 258
L L NL L L F+ +++D ID L N L RLEL N ++ + L
Sbjct: 103 LANLTNLTGLTL----FNNQITD-IDPLKNLTN---LNRLELSSNTIS-----DISALSG 149
Query: 259 LRYLE-LWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317
L L+ L + + + + P L NLT LE L ++SN+++ +L+ + L ++NQ
Sbjct: 150 LTSLQQLNFGNQVTDLKP-LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQI 206
Query: 318 EGFITDAHLRNLTSLEELSL 337
L LT+L+ELSL
Sbjct: 207 SDI---TPLGILTNLDELSL 223
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN 258
L L NL++L + NQ S I L N L L L NQL +L L N
Sbjct: 191 LAKLTNLESLIATNNQISD-----ITPLGILTN---LDELSLNGNQLKD--IGTLASLTN 240
Query: 259 LRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 318
L L+L N P L LT L EL L +NQ++ P L+A+ LEL++NQ E
Sbjct: 241 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 296
Query: 319 GFITDAHLRNLTSL 332
++L+NLT L
Sbjct: 297 DISPISNLKNLTYL 310
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN 258
L L NL L L F+ +++D ID L N L RLEL N ++ +L L +
Sbjct: 103 LANLTNLTGLTL----FNNQITD-IDPLKNLTN---LNRLELSSNTISD--ISALSGLTS 152
Query: 259 LRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 318
L+ L N P L NLT LE L ++SN+++ +L+ + L ++NQ
Sbjct: 153 LQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQIS 208
Query: 319 GFITDAHLRNLTSLEELSL 337
L LT+L+ELSL
Sbjct: 209 DI---TPLGILTNLDELSL 224
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 202 LCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRY 261
L NLQ +S N F DF L RL L N LT LP + L NLR
Sbjct: 231 LSNLQIFNISANIFK---YDF------------LTRLYLNGNSLT-ELPAEIKNLSNLRV 274
Query: 262 LELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 318
L+L +N L S+P LG+ L+ Y N M P FG L ++ L + N E
Sbjct: 275 LDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLE 329
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 222 FIDGLS-ECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNL 280
++D ++ C+ +L L + + LT +++ +L LR+L L YN L L
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271
Query: 281 TFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEE 334
L+E+ L Q+ P +F L+ +RVL +S NQ LT+LEE
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ------------LTTLEE 313
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 234 SLARLELG-YNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQ 292
SL RL+LG +L + L NLRYL L + L IP +L L LEEL L+ N+
Sbjct: 132 SLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCN-LKDIP-NLTALVRLEELELSGNR 189
Query: 293 MNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL 337
++ P SF L+++R L L Q +A +L SLEEL+L
Sbjct: 190 LDLIRPGSFQGLTSLRKLWLMHAQVATIERNA-FDDLKSLEELNL 233
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
Query: 227 SECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEEL 286
+ C S+ +R+ +L +P S+ N RYL L NS + +L LE L
Sbjct: 8 AACSCSNQASRVICTRREL-AEVPASIPV--NTRYLNLQENSIQVIRTDTFKHLRHLEIL 64
Query: 287 YLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLS 346
L+ N + +F L ++ LEL DN+ T A L+ L EL L S+
Sbjct: 65 QLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQA-FEYLSKLRELWLRNNPIESIP 123
Query: 347 FNISFDWIPPFK 358
+ +F+ +P +
Sbjct: 124 -SYAFNRVPSLR 134
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 244 QLTGNL--PISLGY---LKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFP 298
QL+ NL I +G L +L LEL+ N + L+ L EL+L +N +
Sbjct: 65 QLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPS 124
Query: 299 ESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL 337
+F ++ ++R L+L + + +I++A L +L L+L
Sbjct: 125 YAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNL 163
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 234 SLARLELG-YNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQ 292
SL RL+LG +L + L NLRYL L + L IP +L L LEEL L+ N+
Sbjct: 132 SLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCN-LKDIP-NLTALVRLEELELSGNR 189
Query: 293 MNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL 337
++ P SF L+++R L L Q +A +L SLEEL+L
Sbjct: 190 LDLIRPGSFQGLTSLRKLWLMHAQVATIERNA-FDDLKSLEELNL 233
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 13/133 (9%)
Query: 229 CINSSS---LARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEE 285
C N +S R EL ++ ++P+ N RYL L NS + +L LE
Sbjct: 12 CSNQASRVICTRRELA--EVPASIPV------NTRYLNLQENSIQVIRTDTFKHLRHLEI 63
Query: 286 LYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSL 345
L L+ N + +F L ++ LEL DN+ T A L+ L EL L S+
Sbjct: 64 LQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQA-FEYLSKLRELWLRNNPIESI 122
Query: 346 SFNISFDWIPPFK 358
+ +F+ +P +
Sbjct: 123 P-SYAFNRVPSLR 134
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 244 QLTGNL--PISLGY---LKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFP 298
QL+ NL I +G L +L LEL+ N + L+ L EL+L +N +
Sbjct: 65 QLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPS 124
Query: 299 ESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL 337
+F ++ ++R L+L + + +I++A L +L L+L
Sbjct: 125 YAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNL 163
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 66/146 (45%), Gaps = 14/146 (9%)
Query: 253 LGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLEL 312
+ YL NL LEL N P L NLT + EL L+ N + K + L +I+ L+L
Sbjct: 65 IQYLNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDL 120
Query: 313 SDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPK 372
+ Q A L NL L L L + +N S ++ L+YL I Q+
Sbjct: 121 TSTQITDVTPLAGLSNLQVLY-LDLNQITNISPLAGLT-------NLQYLSIGNNQVNDL 172
Query: 373 FPTWLRNQTELTTLVLNSASISDTLP 398
P L N ++LTTL + ISD P
Sbjct: 173 TP--LANLSKLTTLRADDNKISDISP 196
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 65/144 (45%), Gaps = 14/144 (9%)
Query: 255 YLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSD 314
YL NL LEL N P L NLT + EL L+ N + K + L +I+ L+L+
Sbjct: 61 YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTS 116
Query: 315 NQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFP 374
Q A L NL L L L + +N S ++ L+YL I Q+ P
Sbjct: 117 TQITDVTPLAGLSNLQVLY-LDLNQITNISPLAGLT-------NLQYLSIGNAQVSDLTP 168
Query: 375 TWLRNQTELTTLVLNSASISDTLP 398
L N ++LTTL + ISD P
Sbjct: 169 --LANLSKLTTLKADDNKISDISP 190
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 226 LSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEE 285
L + + S L RL LG+NQ+ SL +L LR L L N+ L +P L +L L+
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD-NNKLSRVPAGLPDLKLLQV 268
Query: 286 LYLTSNQM-----NGKFPESFGQLSA 306
+YL +N + N P FG A
Sbjct: 269 VYLHTNNITKVGVNDFCPVGFGVKRA 294
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 233 SSLARLELGYNQLTGNLPISLGYLKNLRYLELW--YNSFLGSIPPSL-GNLTFLEELYLT 289
+ L L L YNQL +S G +L L N+ L S+P + +LT L++LYL
Sbjct: 59 TKLTWLNLDYNQLQ---TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115
Query: 290 SNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL 337
NQ+ F +L+ ++ L L+ NQ + A LT+L+ LSL
Sbjct: 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA-FDKLTNLQTLSL 162
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 202 LCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISL-GYLKNLR 260
L L TL L+ NQ + D L++ L +L LG NQL +LP + L L+
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQ------LDKLYLGGNQLK-SLPSGVFDRLTKLK 134
Query: 261 YLELWYNSFLGSIPP-SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 318
L L N L SIP + LT L+ L L++NQ+ +F +L ++ + L NQ++
Sbjct: 135 ELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 233 SSLARLELGYNQLTGNLPISLGYLKNLRYLELW--YNSFLGSIPPSL-GNLTFLEELYLT 289
+ L L L YNQL +S G +L L N+ L S+P + +LT L++LYL
Sbjct: 59 TKLTWLNLDYNQLQ---TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115
Query: 290 SNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL 337
NQ+ F +L+ ++ L L+ NQ + A LT+L+ LSL
Sbjct: 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA-FDKLTNLQTLSL 162
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 202 LCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISL-GYLKNLR 260
L L TL L+ NQ + D L++ L +L LG NQL +LP + L L+
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQ------LDKLYLGGNQLK-SLPSGVFDRLTKLK 134
Query: 261 YLELWYNSFLGSIPP-SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 318
L L N L SIP + LT L+ L L++NQ+ +F +L ++ + L NQ++
Sbjct: 135 ELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 20/179 (11%)
Query: 223 IDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTF 282
+ ++ N + L L L YNQ+ P L L +L Y + N P + N T
Sbjct: 167 VKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANXTR 222
Query: 283 LEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAH-LRNLTSLEELSLIKTS 341
L L + +N++ P LS + LE+ NQ I+D + +++LT L+ L++
Sbjct: 223 LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ----ISDINAVKDLTKLKXLNVGSNQ 276
Query: 342 NSSLSF--NISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLP 398
S +S N+S +L L + QLG + + T LTTL L+ I+D P
Sbjct: 277 ISDISVLNNLS-------QLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 223 IDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTF 282
I LS N S L LE+G NQ++ ++ L L+ L + N S L NL+
Sbjct: 233 ITDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQI--SDISVLNNLSQ 288
Query: 283 LEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEE 334
L L+L +NQ+ + E G L+ + L LS N ITD +R L SL +
Sbjct: 289 LNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNH----ITD--IRPLASLSK 334
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQM 293
SL L L N++T SL L NL L L +NS SL N L EL+L +N++
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 294 NGKFPESFGQLSAIRVLELSDN 315
K P I+V+ L +N
Sbjct: 253 -VKVPGGLADHKYIQVVYLHNN 273
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 236 ARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNG 295
A L+L N++T LKNL L L N P + L LE LYL+ NQ+
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 296 KFPESFGQ-LSAIRVLE 311
+ PE + L +RV E
Sbjct: 114 ELPEKMPKTLQELRVHE 130
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQM 293
SL L L N++T SL L NL L L +NS SL N L EL+L +N++
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 294 NGKFPESFGQLSAIRVLELSDN 315
K P I+V+ L +N
Sbjct: 253 -VKVPGGLADHKYIQVVYLHNN 273
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 236 ARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNG 295
A L+L N++T LKNL L L N P + L LE LYL+ NQ+
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 296 KFPESFGQ-LSAIRVLE 311
+ PE + L +RV E
Sbjct: 114 ELPEKMPKTLQELRVHE 130
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 233 SSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSL-GNLTFLEELYLTSN 291
+SL +L LG N+L L +L YL L N L S+P + LT L+EL L +N
Sbjct: 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTN 110
Query: 292 QMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEEL 335
Q+ F +L+ ++ L L NQ + + D LTSL+ +
Sbjct: 111 QLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYI 153
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 247 GNLPISLGYLKNLRYLELWYNSFLGSIPPSL-GNLTFLEELYLTSNQMNGKFPESFGQLS 305
G + G YL+L NS L S+P + LT L +LYL N++ F +L+
Sbjct: 18 GRTSVPTGIPAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76
Query: 306 AIRVLELSDNQWEGFITDAHLRNLTSLEELSL 337
++ L LS NQ + + + LT L+EL+L
Sbjct: 77 SLTYLNLSTNQLQS-LPNGVFDKLTQLKELAL 107
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 233 SSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSL-GNLTFLEELYLTSN 291
+SL L L NQL L L+ L L N L S+P + LT L++L L N
Sbjct: 76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN 134
Query: 292 QMNGKFPESFGQLSAIRVLELSDNQWE 318
Q+ F +L++++ + L DN W+
Sbjct: 135 QLKSVPDGVFDRLTSLQYIWLHDNPWD 161
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 235 LARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMN 294
L +LEL NQLTG P + +++ L+L N L L+ L L NQ++
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115
Query: 295 GKFPESFGQLSAIRVLELSDNQWEGFITDAHL 326
P SF L+++ L L+ N F + HL
Sbjct: 116 CVMPGSFEHLNSLTSLNLASNP---FNCNCHL 144
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 253 LGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLEL 312
G L +L LEL N G P + + ++EL L N++ + F L ++ L L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 313 SDNQWEGFITDA--HLRNLTSL 332
DNQ + + HL +LTSL
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSL 131
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 64/150 (42%), Gaps = 18/150 (12%)
Query: 205 LQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLEL 264
+Q L L+ NQ GL ++L +L+L YN L S YL +LRYL L
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKW----TNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSL 279
Query: 265 WYNSFLGSIPPS---LGNLTFL--------EELYLTSNQMNGKFPESFGQLSAIRVLELS 313
YN+ P S L NL +L + + L S+ F SF L + L +
Sbjct: 280 EYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDF--SFQWLKYLEYLNMD 337
Query: 314 DNQWEGFITDAHLRNLTSLEELSLIKTSNS 343
DN ++ L SL+ LSL KT S
Sbjct: 338 DNNIPSTKSNT-FTGLVSLKYLSLSKTFTS 366
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 65/141 (46%), Gaps = 14/141 (9%)
Query: 234 SLARLELGYNQLTGNLPISLGYLK---NLRYLELWYNSFLGSIPPSLGNLTFLEELYLTS 290
SL RL+LG +L IS G + NL+YL L + P+L L LEEL ++
Sbjct: 172 SLMRLDLG--ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSG 227
Query: 291 NQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNIS 350
N P SF LS+++ L + ++Q I L SL EL+L + SSL
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSL----P 282
Query: 351 FDWIPPFKLRYLVIRYYQLGP 371
D P LRYLV + P
Sbjct: 283 HDLFTP--LRYLVELHLHHNP 301
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 86/402 (21%), Positives = 162/402 (40%), Gaps = 56/402 (13%)
Query: 235 LARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLG-SIPPSLGNLTFLEELYLTSNQM 293
L L+L +N+L + IS NL++L+L +N+F I GN++ L+ L L++ +
Sbjct: 71 LEYLDLSHNKL---VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127
Query: 294 NGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSF--NISF 351
L+ +VL + + L++ + E L ++ +N F ++S
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT-ESLHIVFPTNKEFHFILDVSV 186
Query: 352 DWIPPFKLRYL--------------VIRYYQLGPKFPTWLRNQTELT--------TLVLN 389
+ +L + ++ Q PK N E T LV +
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246
Query: 390 SASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLV---FRFPGSV--DLSSNRFEGP 444
+ ++ + LQ L + D G L + +V F FP S ++ SN
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306
Query: 445 IPLWSSNLTKLY-------LRDLDISFNSINGSIPQSVGNLKQLLTLVIXXXXXXXXXXX 497
+ + + + LD S N + ++ ++ G+L +L TL++
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL------QMNQL 360
Query: 498 XXXGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMD---SLDLGENQLSGNIPAW 554
+I E + +++ L +S N +S + +CS SL++ N L+ I
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG--DCSWTKSLLSLNMSSNILTDTIFRC 418
Query: 555 IGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 596
+ P + +L L SN +IP ++ KL AL L+++ N L
Sbjct: 419 LP---PRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQL 456
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 24/143 (16%)
Query: 197 RNLGTLCNLQTLKLSLNQFS-----GEVSDFIDGLSE----------------CINSSSL 235
N G L L+TL L +NQ E++ + L + C + SL
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401
Query: 236 ARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNG 295
L + N LT + L ++ L+L N + SIP + L L+EL + SNQ+
Sbjct: 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLKS 458
Query: 296 KFPESFGQLSAIRVLELSDNQWE 318
F +L++++ + L N W+
Sbjct: 459 VPDGIFDRLTSLQKIWLHTNPWD 481
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 70/172 (40%), Gaps = 10/172 (5%)
Query: 254 GYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS 313
G N R L L N S +L LE L L+ N + +F L+ + LEL
Sbjct: 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120
Query: 314 DNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYL--VIRYYQLGP 371
DN+ I + L+ L+EL L S+ + +F+ IP + L + R +
Sbjct: 121 DNRLTT-IPNGAFVYLSKLKELWLRNNPIESIP-SYAFNRIPSLRRLDLGELKRLSYISE 178
Query: 372 KFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIP 423
L N L + N I + P + LDELD+ GNHLS P
Sbjct: 179 GAFEGLSNLRYLNLAMCNLREIPNLTPL------IKLDELDLSGNHLSAIRP 224
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 234 SLARLELGYNQLTGNLPISLGY---LKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTS 290
SL RL+LG +L IS G L NLRYL L + L IP +L L L+EL L+
Sbjct: 161 SLRRLDLG--ELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP-NLTPLIKLDELDLSG 216
Query: 291 NQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL 337
N ++ P SF L ++ L + +Q + +A NL SL E++L
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA-FDNLQSLVEINL 262
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 15/166 (9%)
Query: 215 FSGEVSDFIDGLSECINS------SSLARLELGYNQLTGNLPISLGYLKNLRYLEL---W 265
S + S DG S S +++ L+L +N++T L NL+ L L
Sbjct: 2 LSCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61
Query: 266 YNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAH 325
N+ G SLG+L E L L+ N ++ FG LS+++ L L N ++ +
Sbjct: 62 INTIEGDAFYSLGSL---EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118
Query: 326 LRNLTSLEELSLIKTSNSSLSFNISFDWIP---PFKLRYLVIRYYQ 368
NLT+L+ L + S I F + +++ L +R YQ
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 237 RLELGYNQLTGNLPISLGYLKNLRYLELWYNS-FLGSIPPSL-GNLTFLEELYLTSNQMN 294
RL L NQ+T P +L NL+ +L++NS L +IP + LT L +L L N +
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVNLQ--QLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94
Query: 295 GKFPESFGQLSAIRVLELSDNQWEGFITD-AHLRN 328
+F L ++ + L +N W+ D +LRN
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRN 129
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 15/166 (9%)
Query: 215 FSGEVSDFIDGLSECINS------SSLARLELGYNQLTGNLPISLGYLKNLRYLEL---W 265
S + S DG S S +++ L+L +N++T L NL+ L L
Sbjct: 28 LSCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 87
Query: 266 YNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAH 325
N+ G SLG+L E L L+ N ++ FG LS+++ L L N ++ +
Sbjct: 88 INTIEGDAFYSLGSL---EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 144
Query: 326 LRNLTSLEELSLIKTSNSSLSFNISFDWIP---PFKLRYLVIRYYQ 368
NLT+L+ L + S I F + +++ L +R YQ
Sbjct: 145 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 190
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 256 LKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDN 315
L +L L L N P + +L L LYL +N ++ E+ L A++ L L+DN
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Query: 316 QWEGFITDAHLRNL 329
W + D R L
Sbjct: 236 PW---VCDCRARPL 246
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 256 LKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDN 315
L +L L L N P + +L L LYL +N ++ E+ L A++ L L+DN
Sbjct: 175 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Query: 316 QWEGFITDAHLRNL 329
W + D R L
Sbjct: 235 PW---VCDCRARPL 245
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 235 LARLELGYNQLTGN--LPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQ 292
L +L+L ++ + + + L L++L+YL L YN LG + LE L +
Sbjct: 351 LQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTH 410
Query: 293 MNGKFPES-FGQLSAIRVLELS 313
++ K P S F L +RVL LS
Sbjct: 411 LHVKAPHSPFQNLHLLRVLNLS 432
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 118/293 (40%), Gaps = 30/293 (10%)
Query: 202 LCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRY 261
LC++ ++L + SD C + + L+L L G LP + + +L+
Sbjct: 250 LCDMSVESINLQKH--RFSDLSSSTFRCF--TRVQELDLTAAHLNG-LPSGIEGMNSLKK 304
Query: 262 LELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKF-PESFGQLSAIRVLELSDNQWEGF 320
L L NSF + + L +LY+ N +L ++ L+LS + E
Sbjct: 305 LVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEAS 364
Query: 321 -ITDAHLRNLTSLEELSLIKTSNSSLSF-NISFDWIPPFKLRYLVIRYYQLGPKFPTWLR 378
+ L+NL L+ L+L + N L + +F P +L L + + L K P
Sbjct: 365 DCCNLQLKNLRHLQYLNL--SYNEPLGLEDQAFKECP--QLELLDVAFTHLHVKAPHSPF 420
Query: 379 NQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLS-GRIPNTLVFRFPGSVDLS 437
L ++ S + DT L L L++ GN G I T + + GS+++
Sbjct: 421 QNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEI- 479
Query: 438 SNRFEGPIPLWSSNLTKL---------YLRDLDISFNSINGSIPQSVGNLKQL 481
+ L S NL + + LD+S NS+ G ++ +LK L
Sbjct: 480 -------LILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL 525
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 235 LARLELGYNQLTGNLPISL-GYLKNLRYLELWYNSFLGSIPPSL-GNLTFLEELYLTSNQ 292
L R +LT ++P +L ++NL +LEL N + +P L +L LE + SN+
Sbjct: 125 LKRFRFTTRRLT-HIPANLLTDMRNLSHLELRAN--IEEMPSHLFDDLENLESIEFGSNK 181
Query: 293 MNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEEL 335
+ FG++ ++ L L+ NQ + + D LTSL+++
Sbjct: 182 LRQMPRGIFGKMPKLKQLNLASNQLKS-VPDGIFDRLTSLQKI 223
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 233 SSLARLELGYNQLTGN-LPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSN 291
SSL L++ N N LP L+NL +L+L P + +L+ L+ L + SN
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Query: 292 QMNGKFPESFGQLSAIRVLELSDNQWE 318
Q+ F +L++++ + L N W+
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTNPWD 531
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 509 SLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLR 568
SL + +L +S+ H S ++ L + N N I + +L+ L L
Sbjct: 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502
Query: 569 SNHFNGTIPSELCKLSALHILDLSHNNL--LGPIPY 602
P+ LS+L +L++SHNN L PY
Sbjct: 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 538
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Query: 231 NSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPS--LGNLTFLEELYL 288
N +L L+LG +++ P + L +L L L++ ++ NL L L L
Sbjct: 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130
Query: 289 TSNQMNGKFPE-SFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSF 347
+ NQ+ + SFG+L++++ ++ S NQ F+ H + LS + +SL
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQI--FLVCEHELEPLQGKTLSFFSLAANSLYS 188
Query: 348 NISFDW---IPPFK 358
+S DW + PF+
Sbjct: 189 RVSVDWGKCMNPFR 202
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 50/121 (41%), Gaps = 37/121 (30%)
Query: 513 IRFLVLSNNHLS---GEIPPSLKNCSLMDSLDLGENQLSGNIPAW-------IGESMPSL 562
++ L+L+ N S G+ PS +N SL + L LGEN L AW + E + L
Sbjct: 428 LQILILNQNRFSSCSGDQTPS-ENPSL-EQLFLGENMLQ---LAWETELCWDVFEGLSHL 482
Query: 563 SILRLRSNHFNGTIPSELCKLSALH----------------------ILDLSHNNLLGPI 600
+L L N+ N P L+AL ILD+S N LL P
Sbjct: 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPN 542
Query: 601 P 601
P
Sbjct: 543 P 543
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 141/365 (38%), Gaps = 47/365 (12%)
Query: 235 LARLELGYNQLTGNLPISLGYLKNLRYLELWYN--SFLGSIPPSLGNLTFLEELYLTSNQ 292
L+ L L N L SL K+L++L L S L IP + NL LE LYL SN
Sbjct: 80 LSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIP--VHNLENLESLYLGSNH 137
Query: 293 MNG-KFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNI-S 350
++ KFP+ F + ++VL+ +N +I+ +R+L LSL N+ + +
Sbjct: 138 ISSIKFPKDFPARN-LKVLDFQNNAIH-YISREDMRSLEQAINLSLNFNGNNVKGIELGA 195
Query: 351 FDWIPPFKLRY-------LVIRYYQLGPKFPTWLRN------------------QTELTT 385
FD L + ++ Q WL + + +
Sbjct: 196 FDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLWLGTFEDIDDEDISSAMLKGLCEMSVES 255
Query: 386 LVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPI 445
L L SD + F Q L ELD+ HL G + LS N F+
Sbjct: 256 LNLQEHRFSDISSTTF-QCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLC 314
Query: 446 PLWSSN---LTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVIXXXXXXXXXXXXXXGE 502
+ ++N LT LY+R ++ + + +GNL+ L
Sbjct: 315 QISAANFPSLTHLYIRG-NVKKLHLGVGCLEKLGNLQTL---------DLSHNDIEASDC 364
Query: 503 IPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSL 562
+ +L ++ L LS+N G + K C ++ LDL +L N P +++ L
Sbjct: 365 CSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFL 424
Query: 563 SILRL 567
+L L
Sbjct: 425 QVLNL 429
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 509 SLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLR 568
SL + +L +S+ H S ++ L + N N I + +L+ L L
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 569 SNHFNGTIPSELCKLSALHILDLSHNNL--LGPIPY 602
P+ LS+L +L++SHNN L PY
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 509 SLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLR 568
SL + +L +S+ H S ++ L + N N I + +L+ L L
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 569 SNHFNGTIPSELCKLSALHILDLSHNNL--LGPIPY 602
P+ LS+L +L++SHNN L PY
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 527 IPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSAL 586
+P SL + + + LDL N LS W + +L L L NH N + L
Sbjct: 33 VPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90
Query: 587 HILDLSHNNLLGPIPYCVGDFSAM 610
LDLS N+L + D A+
Sbjct: 91 RYLDLSSNHLHTLDEFLFSDLQAL 114
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 114/266 (42%), Gaps = 28/266 (10%)
Query: 193 GQLSRNLGTLCNLQTLKLSLNQFSG----EVSDFIDGLSECINSSSLARLELGYNQLTGN 248
+L L L L+ L LS N+F S+F L+ + RLELG TG
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNF-PSLTHLSIKGNTKRLELG----TG- 344
Query: 249 LPISLGYLKNLRYLELWYNSFLGS--IPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSA 306
L L+NLR L+L ++ S L NL+ L+ L L+ N+ E+F +
Sbjct: 345 ---CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401
Query: 307 IRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLS-FNIS----FDWIPPFKLRY 361
+ +L+L+ + + + DA + + L L+K N S S +IS FD +P +
Sbjct: 402 LELLDLAFTRLK--VKDAQ----SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455
Query: 362 LVIRYYQLGPKFPT-WLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSG 420
L ++ G T L+ L LVL+ +S F L + ++ +D+ N L+
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKM-MNHVDLSHNRLTS 514
Query: 421 RIPNTLVFRFPGSVDLSSNRFEGPIP 446
L ++L+SN +P
Sbjct: 515 SSIEALSHLKGIYLNLASNHISIILP 540
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 270 LGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNL 329
L S+P G T + LYL NQ+ P F +L+ + L+L +NQ + L
Sbjct: 21 LASVP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKL 77
Query: 330 TSLEELSL 337
T L +LSL
Sbjct: 78 TQLTQLSL 85
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 270 LGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNL 329
L S+P G T + LYL NQ+ P F +L+ + L+L +NQ + L
Sbjct: 29 LASVP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKL 85
Query: 330 TSLEELSL 337
T L +LSL
Sbjct: 86 TQLTQLSL 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,127,315
Number of Sequences: 62578
Number of extensions: 617208
Number of successful extensions: 1497
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1073
Number of HSP's gapped (non-prelim): 267
length of query: 611
length of database: 14,973,337
effective HSP length: 105
effective length of query: 506
effective length of database: 8,402,647
effective search space: 4251739382
effective search space used: 4251739382
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)