Query 047139
Match_columns 611
No_of_seqs 486 out of 4093
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:03:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2E-66 4.3E-71 602.4 40.1 532 40-603 27-590 (968)
2 PLN00113 leucine-rich repeat r 100.0 9.6E-55 2.1E-59 504.8 33.5 474 120-611 69-574 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 6.8E-40 1.5E-44 311.9 -12.5 439 114-602 62-544 (565)
4 KOG4194 Membrane glycoprotein 100.0 3E-36 6.6E-41 299.2 7.6 391 123-593 55-448 (873)
5 KOG4194 Membrane glycoprotein 100.0 3.1E-34 6.6E-39 285.1 7.7 380 157-607 55-439 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 8.9E-38 1.9E-42 297.4 -17.9 454 118-611 43-531 (565)
7 KOG0444 Cytoskeletal regulator 100.0 5.7E-35 1.2E-39 292.0 -4.0 386 106-603 17-410 (1255)
8 KOG0618 Serine/threonine phosp 100.0 4.1E-33 9E-38 291.3 -3.9 404 145-595 59-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 2.5E-32 5.3E-37 273.2 -4.7 368 151-597 4-375 (1255)
10 KOG0618 Serine/threonine phosp 100.0 1.3E-31 2.9E-36 280.0 -2.6 434 112-597 13-465 (1081)
11 PLN03210 Resistant to P. syrin 99.9 4.4E-23 9.6E-28 240.4 27.7 346 198-595 553-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 8.1E-23 1.8E-27 238.2 29.4 349 113-522 551-904 (1153)
13 PRK15387 E3 ubiquitin-protein 99.9 1.1E-21 2.5E-26 212.6 16.6 264 234-580 202-465 (788)
14 KOG4237 Extracellular matrix p 99.8 4.5E-23 9.7E-28 197.2 -2.8 250 134-394 71-359 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 2.1E-20 4.5E-25 202.8 17.2 82 458-556 385-466 (788)
16 KOG4237 Extracellular matrix p 99.8 8.1E-22 1.7E-26 188.7 -3.2 401 154-594 67-498 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 6.7E-19 1.5E-23 192.4 11.9 247 234-573 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 9E-18 2E-22 183.6 20.2 266 37-341 58-357 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.7E-19 5.8E-24 181.6 0.7 38 511-548 250-291 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.1E-18 2.5E-23 177.0 0.2 202 135-340 3-231 (319)
21 KOG0617 Ras suppressor protein 99.7 2.3E-19 4.9E-24 152.7 -4.9 166 116-304 29-195 (264)
22 KOG0617 Ras suppressor protein 99.6 2.5E-18 5.4E-23 146.5 -6.0 159 150-320 29-188 (264)
23 PLN03150 hypothetical protein; 99.6 6.3E-15 1.4E-19 160.8 13.5 137 37-200 367-511 (623)
24 KOG0532 Leucine-rich repeat (L 99.3 2.2E-13 4.8E-18 137.1 -4.3 136 444-597 112-247 (722)
25 PLN03150 hypothetical protein; 99.2 6.8E-11 1.5E-15 129.4 8.5 94 501-595 432-526 (623)
26 KOG0532 Leucine-rich repeat (L 99.1 4.7E-12 1E-16 127.7 -4.9 169 135-319 80-248 (722)
27 COG4886 Leucine-rich repeat (L 99.0 2.7E-10 5.8E-15 119.1 6.9 178 407-603 117-296 (394)
28 KOG1259 Nischarin, modulator o 99.0 4.9E-11 1.1E-15 111.2 1.1 129 457-600 286-415 (490)
29 COG4886 Leucine-rich repeat (L 99.0 2.3E-10 4.9E-15 119.7 5.9 174 150-339 112-286 (394)
30 KOG1909 Ran GTPase-activating 99.0 4.6E-11 1E-15 114.1 0.2 192 355-572 90-310 (382)
31 PF14580 LRR_9: Leucine-rich r 99.0 6.4E-10 1.4E-14 99.8 6.1 119 458-591 22-147 (175)
32 KOG3207 Beta-tubulin folding c 99.0 1.1E-10 2.3E-15 114.7 -0.2 183 150-339 142-335 (505)
33 PF14580 LRR_9: Leucine-rich r 99.0 6.2E-10 1.3E-14 99.9 4.6 109 476-597 16-126 (175)
34 KOG1909 Ran GTPase-activating 98.9 9.8E-11 2.1E-15 111.9 -2.4 116 304-419 156-283 (382)
35 KOG3207 Beta-tubulin folding c 98.9 7.6E-10 1.6E-14 108.7 2.4 184 376-573 141-339 (505)
36 KOG1259 Nischarin, modulator o 98.9 3.8E-10 8.3E-15 105.3 -0.1 16 115-130 209-224 (490)
37 PF08263 LRRNT_2: Leucine rich 98.8 7.7E-09 1.7E-13 69.6 4.8 38 41-78 2-43 (43)
38 PF13855 LRR_8: Leucine rich r 98.7 4.3E-09 9.4E-14 77.5 2.1 59 536-595 2-60 (61)
39 KOG4658 Apoptotic ATPase [Sign 98.7 8.6E-09 1.9E-13 115.4 4.0 105 204-315 546-652 (889)
40 KOG4658 Apoptotic ATPase [Sign 98.7 7.3E-09 1.6E-13 116.0 1.9 85 150-242 567-651 (889)
41 PF13855 LRR_8: Leucine rich r 98.6 3.2E-08 6.9E-13 72.8 4.4 59 234-292 2-60 (61)
42 KOG0531 Protein phosphatase 1, 98.5 1.4E-08 3E-13 106.5 0.1 63 150-217 114-176 (414)
43 KOG1859 Leucine-rich repeat pr 98.4 9.5E-09 2.1E-13 107.0 -6.0 132 426-573 161-292 (1096)
44 KOG0531 Protein phosphatase 1, 98.4 6.5E-08 1.4E-12 101.4 -0.4 82 234-319 73-154 (414)
45 KOG2120 SCF ubiquitin ligase, 98.3 8.3E-09 1.8E-13 96.6 -7.2 153 234-391 211-373 (419)
46 KOG4579 Leucine-rich repeat (L 98.3 6.2E-08 1.4E-12 80.4 -1.4 136 458-607 30-169 (177)
47 KOG2120 SCF ubiquitin ligase, 98.3 3.9E-09 8.5E-14 98.7 -10.1 64 303-368 311-374 (419)
48 KOG2982 Uncharacterized conser 98.1 4.8E-07 1E-11 85.0 -1.4 36 304-339 223-258 (418)
49 KOG2982 Uncharacterized conser 98.1 1.2E-06 2.6E-11 82.4 1.0 36 154-189 71-108 (418)
50 KOG1859 Leucine-rich repeat pr 98.1 1.5E-07 3.3E-12 98.2 -5.4 21 147-167 102-122 (1096)
51 COG5238 RNA1 Ran GTPase-activa 98.0 7.8E-07 1.7E-11 82.5 -0.6 40 355-394 90-133 (388)
52 PF12799 LRR_4: Leucine Rich r 97.9 8E-06 1.7E-10 55.0 3.1 36 512-548 2-37 (44)
53 KOG4579 Leucine-rich repeat (L 97.9 2.4E-07 5.2E-12 77.0 -5.2 113 458-583 56-169 (177)
54 COG5238 RNA1 Ran GTPase-activa 97.8 4.5E-06 9.7E-11 77.6 0.2 16 254-269 117-132 (388)
55 PF12799 LRR_4: Leucine Rich r 97.8 1.8E-05 3.8E-10 53.3 2.8 36 536-573 2-37 (44)
56 PRK15386 type III secretion pr 97.7 0.00014 3E-09 73.7 8.3 138 116-291 48-187 (426)
57 PRK15386 type III secretion pr 97.7 0.0001 2.2E-09 74.7 7.3 133 406-571 52-188 (426)
58 KOG1644 U2-associated snRNP A' 97.7 8.4E-05 1.8E-09 66.4 5.8 83 257-341 42-124 (233)
59 KOG3665 ZYG-1-like serine/thre 97.7 1.1E-05 2.4E-10 88.5 0.3 152 178-336 122-281 (699)
60 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.7E-09 65.4 5.9 103 480-593 43-149 (233)
61 KOG4341 F-box protein containi 97.5 4.1E-06 8.9E-11 82.6 -5.6 305 234-566 139-458 (483)
62 KOG3665 ZYG-1-like serine/thre 97.3 0.00014 3E-09 80.0 2.7 111 153-272 147-265 (699)
63 KOG2123 Uncharacterized conser 97.1 2.1E-05 4.6E-10 73.5 -4.5 101 478-590 18-123 (388)
64 KOG2739 Leucine-rich acidic nu 97.0 0.00017 3.7E-09 67.3 0.5 62 278-339 62-125 (260)
65 PF13306 LRR_5: Leucine rich r 96.9 0.0014 2.9E-08 56.4 5.2 124 473-611 6-129 (129)
66 KOG4341 F-box protein containi 96.8 2.5E-05 5.5E-10 77.1 -7.0 85 257-341 138-227 (483)
67 PF13306 LRR_5: Leucine rich r 96.8 0.0065 1.4E-07 52.1 8.2 93 234-332 36-128 (129)
68 KOG2739 Leucine-rich acidic nu 96.5 0.002 4.3E-08 60.4 3.2 111 471-593 35-152 (260)
69 KOG2123 Uncharacterized conser 96.4 0.00015 3.3E-09 67.9 -4.9 78 258-339 20-97 (388)
70 PF00560 LRR_1: Leucine Rich R 95.9 0.0024 5.2E-08 35.7 0.4 19 586-605 2-20 (22)
71 KOG4308 LRR-containing protein 95.4 0.00015 3.2E-09 76.3 -10.6 38 359-396 89-130 (478)
72 PF00560 LRR_1: Leucine Rich R 95.4 0.0061 1.3E-07 34.0 0.7 19 562-581 2-20 (22)
73 KOG4308 LRR-containing protein 93.9 0.00062 1.3E-08 71.7 -10.4 17 355-371 113-129 (478)
74 KOG1947 Leucine rich repeat pr 92.6 0.009 1.9E-07 64.2 -4.6 62 280-341 242-306 (482)
75 KOG1947 Leucine rich repeat pr 92.3 0.051 1.1E-06 58.3 0.8 97 473-573 208-308 (482)
76 PF13504 LRR_7: Leucine rich r 92.3 0.083 1.8E-06 27.3 1.2 6 565-570 6-11 (17)
77 smart00369 LRR_TYP Leucine-ric 91.9 0.16 3.6E-06 29.5 2.3 21 535-556 2-22 (26)
78 smart00370 LRR Leucine-rich re 91.9 0.16 3.6E-06 29.5 2.3 21 535-556 2-22 (26)
79 PF13516 LRR_6: Leucine Rich r 90.7 0.13 2.9E-06 29.2 1.1 18 535-552 2-19 (24)
80 KOG3864 Uncharacterized conser 89.7 0.054 1.2E-06 49.0 -1.6 82 480-570 102-186 (221)
81 KOG0473 Leucine-rich repeat pr 89.2 0.014 3.1E-07 53.6 -5.7 84 510-597 41-124 (326)
82 KOG3864 Uncharacterized conser 88.7 0.069 1.5E-06 48.3 -1.7 88 453-546 99-187 (221)
83 KOG0473 Leucine-rich repeat pr 84.6 0.029 6.4E-07 51.7 -6.3 82 234-318 43-124 (326)
84 PF13516 LRR_6: Leucine Rich r 83.2 0.66 1.4E-05 26.2 1.1 20 381-400 2-21 (24)
85 smart00369 LRR_TYP Leucine-ric 82.6 1.1 2.4E-05 25.9 1.9 14 511-524 2-15 (26)
86 smart00370 LRR Leucine-rich re 82.6 1.1 2.4E-05 25.9 1.9 14 511-524 2-15 (26)
87 smart00368 LRR_RI Leucine rich 74.8 2.4 5.2E-05 25.1 1.7 13 536-548 3-15 (28)
88 smart00364 LRR_BAC Leucine-ric 73.5 2.5 5.5E-05 24.5 1.5 17 561-578 3-19 (26)
89 smart00365 LRR_SD22 Leucine-ri 69.2 4.3 9.3E-05 23.6 1.8 13 536-548 3-15 (26)
90 KOG4242 Predicted myosin-I-bin 63.2 28 0.00061 36.2 7.4 81 233-315 165-251 (553)
91 KOG3763 mRNA export factor TAP 62.0 4.6 0.0001 42.6 1.8 67 478-550 217-285 (585)
92 KOG3763 mRNA export factor TAP 42.5 17 0.00037 38.5 2.2 64 510-575 217-285 (585)
93 smart00367 LRR_CC Leucine-rich 34.5 27 0.00058 20.0 1.3 12 560-571 2-13 (26)
94 TIGR00864 PCC polycystin catio 33.2 29 0.00062 44.4 2.5 32 517-548 1-32 (2740)
95 KOG4242 Predicted myosin-I-bin 32.7 38 0.00083 35.3 2.9 70 356-427 164-235 (553)
96 KOG1665 AFH1-interacting prote 22.5 1E+02 0.0022 28.7 3.4 14 536-549 217-230 (302)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2e-66 Score=602.40 Aligned_cols=532 Identities=37% Similarity=0.590 Sum_probs=329.2
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCCCcccEEecCCCCcEEEEeCCCCCCCCCCcccccccccceeeeCccccC
Q 047139 40 KEVEREALLQFKQNLTDPSGRLSSW-VGEDCCSWRGVGCNNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQ 118 (611)
Q Consensus 40 ~~~~~~~ll~~k~~~~~~~~~~~~W-~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 118 (611)
.++|++||++||+++.+|.+.+.+| .+.+||.|.||+|++ .++|+.|++++ +.+.|.++..+..
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~--------------~~i~~~~~~~~~~ 91 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSG--------------KNISGKISSAIFR 91 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecC--------------CCccccCChHHhC
Confidence 4589999999999998888888999 577899999999985 57999999998 4444444555555
Q ss_pred CCCCCEEECCCCC---------------CCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEE
Q 047139 119 LKDLEYLDLSLNN---------------FKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLL 183 (611)
Q Consensus 119 l~~L~~L~ls~n~---------------l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L 183 (611)
+++|++|++++|+ +++|+|++|.+++.+|. +.+++|++|++++|.+++.+|..++++++|++|
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 169 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL 169 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence 5555555555442 22445555555544443 234555555555555554555555555555555
Q ss_pred EccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEE
Q 047139 184 DLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLE 263 (611)
Q Consensus 184 ~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 263 (611)
++++|. +.+.+|..++++++|++|++++|.+.+.+|..+..++ +|++|++++|++++.+|..++++++|++|+
T Consensus 170 ~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~------~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 170 DLGGNV-LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK------SLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242 (968)
T ss_pred ECccCc-ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcC------CccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence 555554 3444455555555555555555555555555444444 555555555555555555555555555555
Q ss_pred ccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCC
Q 047139 264 LWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNS 343 (611)
Q Consensus 264 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~ 343 (611)
+++|.+++.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|. .+.++++|+.|++++|
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~l~~n--- 318 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSN--- 318 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh-hHcCCCCCcEEECCCC---
Confidence 555555545555555555555555555555544555555555555555555555444443 4445555555555442
Q ss_pred CceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccC
Q 047139 344 SLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIP 423 (611)
Q Consensus 344 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~ 423 (611)
.+.+..+..+..+++|+.|++++|.+.+.+|.++..+++|+.|++++|++.+.+|.++... ++|+.+++++|++.+.+|
T Consensus 319 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-~~L~~L~l~~n~l~~~~p 397 (968)
T PLN00113 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIP 397 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc-CCCCEEECcCCEecccCC
Confidence 2222333333444455555555555555555555555555555555555555555444432 345555555555554444
Q ss_pred cccccC-CCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCC----------
Q 047139 424 NTLVFR-FPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLS---------- 492 (611)
Q Consensus 424 ~~~~~~-~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~---------- 492 (611)
..+... .++.+++++|++++.+|..+..+..+ +.+++++|.+++.+|..+..+++|+.|++++|++.
T Consensus 398 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L--~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~ 475 (968)
T PLN00113 398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV--YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSK 475 (968)
T ss_pred HHHhCCCCCCEEECcCCEeeeECChhHhcCCCC--CEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccc
Confidence 444332 44555555555554444444433333 33444555555444444444555555555544432
Q ss_pred -----CCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEEC
Q 047139 493 -----DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRL 567 (611)
Q Consensus 493 -----~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~l 567 (611)
+++.|.+++.+|..+.++++|+.|++++|++.+.+|..+.++++|++|++++|.++|.+|..+.. +++|++|++
T Consensus 476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L 554 (968)
T PLN00113 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE-MPVLSQLDL 554 (968)
T ss_pred cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhC-cccCCEEEC
Confidence 34455667788988999999999999999999999999999999999999999999999998876 999999999
Q ss_pred cCCcCcccCCccccCCCCCCEeeccCCcCccCCCcc
Q 047139 568 RSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYC 603 (611)
Q Consensus 568 s~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~ 603 (611)
++|+++|.+|..+.++++|+.+++++|+++|.+|..
T Consensus 555 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred CCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 999999999999999999999999999999999964
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.6e-55 Score=504.77 Aligned_cols=474 Identities=34% Similarity=0.494 Sum_probs=430.7
Q ss_pred CCCCEEECCCC--------------CCCeEEccCCcCccCCCcccc-CCCCCCEEEccCCCCCCCCCccCCCCCCCCEEE
Q 047139 120 KDLEYLDLSLN--------------NFKVLDLSNNGFNSTLPHWLF-NITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLD 184 (611)
Q Consensus 120 ~~L~~L~ls~n--------------~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 184 (611)
.+++.|++++| ++++|+|++|.+++.+|..+. .+++|++|++++|.+++.+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 45777887776 356899999999999998765 999999999999999988885 5689999999
Q ss_pred ccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEc
Q 047139 185 LSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLEL 264 (611)
Q Consensus 185 Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 264 (611)
+++|. +.+.+|..++++++|++|++++|.+.+..|..+..++ +|++|++++|.+++.+|..++++++|++|++
T Consensus 147 Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~------~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 147 LSNNM-LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT------SLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CcCCc-ccccCChHHhcCCCCCEEECccCcccccCChhhhhCc------CCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 99999 6778999999999999999999999999999998888 9999999999999999999999999999999
Q ss_pred cCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCC
Q 047139 265 WYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSS 344 (611)
Q Consensus 265 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~ 344 (611)
++|.+++.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|. .+.++++|++|++++| .
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n---~ 295 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDN---S 295 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCEEECcCC---e
Confidence 99999999999999999999999999999999999999999999999999999988887 7889999999999984 4
Q ss_pred ceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCc
Q 047139 345 LSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPN 424 (611)
Q Consensus 345 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~ 424 (611)
+.+..+..+..+.+|+.|++++|.+.+..|.++..+++|+.|++++|.+.+.+|..+... ++|+.|++++|++.+.+|.
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC-CCCcEEECCCCeeEeeCCh
Confidence 555666667778899999999999999999999999999999999999999999988764 7999999999999999998
Q ss_pred ccccC-CCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCC-----------
Q 047139 425 TLVFR-FPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLS----------- 492 (611)
Q Consensus 425 ~~~~~-~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~----------- 492 (611)
.+... .++.+++++|.+.+.+|..+..+..| ++|++++|++++.+|..+..+++|+.|++++|+++
T Consensus 375 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L--~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 452 (968)
T PLN00113 375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSL--RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP 452 (968)
T ss_pred hHhCcCCCCEEECcCCEecccCCHHHhCCCCC--CEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCC
Confidence 87754 89999999999999999887776655 77888999999999999999999999999999876
Q ss_pred -----CCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEEC
Q 047139 493 -----DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRL 567 (611)
Q Consensus 493 -----~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~l 567 (611)
+++.|.+.|.+|..++ .++|+.|++++|++++.+|..+.++++|+.|++++|++++.+|..+.. +++|++|++
T Consensus 453 ~L~~L~L~~n~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L 530 (968)
T PLN00113 453 SLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS-CKKLVSLDL 530 (968)
T ss_pred CCcEEECcCceeeeecCcccc-cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcC-ccCCCEEEC
Confidence 5677888888887664 589999999999999999999999999999999999999999998876 999999999
Q ss_pred cCCcCcccCCccccCCCCCCEeeccCCcCccCCCccccccCCCC
Q 047139 568 RSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT 611 (611)
Q Consensus 568 s~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~~~~~~~l~ 611 (611)
++|+++|.+|..+..+++|++||+++|+++|.+|..++++++|+
T Consensus 531 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 574 (968)
T PLN00113 531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574 (968)
T ss_pred CCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccC
Confidence 99999999999999999999999999999999999998887764
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=6.8e-40 Score=311.86 Aligned_cols=439 Identities=30% Similarity=0.410 Sum_probs=338.7
Q ss_pred ccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcc
Q 047139 114 PSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEG 193 (611)
Q Consensus 114 ~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~ 193 (611)
+.+.++..+..|+++.|++ + .+|++++.+..++.++.++|+++ .+|..++.+.+|+.++.++|.+ .
T Consensus 62 ~dl~nL~~l~vl~~~~n~l----------~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~--~ 127 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKL----------S-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNEL--K 127 (565)
T ss_pred HhhhcccceeEEEeccchh----------h-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccce--e
Confidence 3444555555555555544 3 67778888889999999999888 7888888899999999998885 4
Q ss_pred cccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccC
Q 047139 194 QLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSI 273 (611)
Q Consensus 194 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 273 (611)
.+|+.++.+..|+.++..+|+++.. |+.+..+. +|..+++.+|++... |+..-+++.|+++|...|-+. .+
T Consensus 128 el~~~i~~~~~l~dl~~~~N~i~sl-p~~~~~~~------~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~N~L~-tl 198 (565)
T KOG0472|consen 128 ELPDSIGRLLDLEDLDATNNQISSL-PEDMVNLS------KLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNSNLLE-TL 198 (565)
T ss_pred ecCchHHHHhhhhhhhccccccccC-chHHHHHH------HHHHhhccccchhhC-CHHHHHHHHHHhcccchhhhh-cC
Confidence 5788888888899999888888754 44555555 788888888888844 444444888888888888765 78
Q ss_pred CCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCC
Q 047139 274 PPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDW 353 (611)
Q Consensus 274 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 353 (611)
|+.++.+.+|+-|++..|++. .+| +|.+++.|++++++.|++.. +|....++++++..||+..|+. .+.|.+.
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRdNkl----ke~Pde~ 271 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLDLRDNKL----KEVPDEI 271 (565)
T ss_pred ChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHh-hHHHHhcccccceeeecccccc----ccCchHH
Confidence 888888888999999988887 566 68888888999988888764 6777888888888999888554 3344455
Q ss_pred CCCcceeEEEecccccCcccchhccCCCCCCEEEccCccccc-------------------------------------c
Q 047139 354 IPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISD-------------------------------------T 396 (611)
Q Consensus 354 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~-------------------------------------~ 396 (611)
.-+.+|+.||+++|.++ .+|..++++ +|+.|.+.+|.+.. +
T Consensus 272 clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 272 CLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT 349 (565)
T ss_pred HHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence 56677888888888876 467778888 88888888886531 0
Q ss_pred cchhHH---hcCCCCCEEEccCcccccccCcccccC----CCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeec
Q 047139 397 LPSWFL---QLNLTLDELDVGGNHLSGRIPNTLVFR----FPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSING 469 (611)
Q Consensus 397 ~p~~~~---~~~~~L~~L~ls~n~l~~~~~~~~~~~----~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~ 469 (611)
.|.+.+ ....+.+.|++++-+++ .+|+..... -...++++.|++. .+|..+..++.+ .+.+.+++|.++
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkel-vT~l~lsnn~is- 425 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKEL-VTDLVLSNNKIS- 425 (565)
T ss_pred CCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHH-HHHHHhhcCccc-
Confidence 111110 11235678888888887 666665433 3778899999987 456555444433 244566777775
Q ss_pred ccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcc
Q 047139 470 SIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSG 549 (611)
Q Consensus 470 ~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 549 (611)
.+|..++.+++|+.|++++|.+. .+|..++.+..|+.||+|.|++. .+|.++..+..++.+-.++|++..
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln---------~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~ 495 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLN---------DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGS 495 (565)
T ss_pred cchHHHHhhhcceeeecccchhh---------hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccc
Confidence 78888999999999999988765 78888888999999999999998 889999999999999999999984
Q ss_pred cChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCc
Q 047139 550 NIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPY 602 (611)
Q Consensus 550 ~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~ 602 (611)
.-|+.+.. +.+|.+||+.+|.+. .+|+.++++++|+.|++++|+|. .|.
T Consensus 496 vd~~~l~n-m~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr 544 (565)
T KOG0472|consen 496 VDPSGLKN-MRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPR 544 (565)
T ss_pred cChHHhhh-hhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCH
Confidence 44444765 999999999999999 89999999999999999999998 454
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3e-36 Score=299.25 Aligned_cols=391 Identities=25% Similarity=0.304 Sum_probs=293.8
Q ss_pred CEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCC
Q 047139 123 EYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTL 202 (611)
Q Consensus 123 ~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l 202 (611)
+.||.+.+.+..++ ...+.|.+| +.-+.||+++|+++...+..|.++++|+.+++.+|.+ ..+|...+-.
T Consensus 55 ~lldcs~~~lea~~--~~~l~g~lp------~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~~~s 124 (873)
T KOG4194|consen 55 RLLDCSDRELEAID--KSRLKGFLP------SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRFGHES 124 (873)
T ss_pred eeeecCcccccccc--ccccCCcCc------cceeeeeccccccccCcHHHHhcCCcceeeeeccchh--hhcccccccc
Confidence 44666666655332 123344444 3456799999999988888999999999999999985 4688877777
Q ss_pred CCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCccc
Q 047139 203 CNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTF 282 (611)
Q Consensus 203 ~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 282 (611)
.+|+.|+|.+|.|+....+.++.++ .|+.||||.|.++..--.+|..-.++++|+|++|.++..-...|..+.+
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~------alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lns 198 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALP------ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNS 198 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHh------hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccch
Confidence 7899999999999998888898888 9999999999999665567777789999999999999877778999999
Q ss_pred CceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEE
Q 047139 283 LEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYL 362 (611)
Q Consensus 283 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 362 (611)
|.+|.|+.|.++...+..|.++++|+.|+|..|.+.- +....|.++++|+.|.+..|....+..
T Consensus 199 L~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri-ve~ltFqgL~Sl~nlklqrN~I~kL~D--------------- 262 (873)
T KOG4194|consen 199 LLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI-VEGLTFQGLPSLQNLKLQRNDISKLDD--------------- 262 (873)
T ss_pred heeeecccCcccccCHHHhhhcchhhhhhccccceee-ehhhhhcCchhhhhhhhhhcCcccccC---------------
Confidence 9999999999997666778889999999999998863 323478888888888888855433322
Q ss_pred EecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCccc
Q 047139 363 VIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFE 442 (611)
Q Consensus 363 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~ 442 (611)
..|..+.++++|+++.|+++..--.|+++. ++|+.|++|+|.|...-++.+.++
T Consensus 263 ------------G~Fy~l~kme~l~L~~N~l~~vn~g~lfgL-t~L~~L~lS~NaI~rih~d~Wsft------------- 316 (873)
T KOG4194|consen 263 ------------GAFYGLEKMEHLNLETNRLQAVNEGWLFGL-TSLEQLDLSYNAIQRIHIDSWSFT------------- 316 (873)
T ss_pred ------------cceeeecccceeecccchhhhhhccccccc-chhhhhccchhhhheeecchhhhc-------------
Confidence 223444555555555555544444444442 345555555555443222222221
Q ss_pred ccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCc
Q 047139 443 GPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNH 522 (611)
Q Consensus 443 ~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~ 522 (611)
+. |++|+|++|+++..-+..|.-+..|++|.|++|.+..+..+.|.| +++|++|||++|.
T Consensus 317 ----------qk--L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~--------lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 317 ----------QK--LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG--------LSSLHKLDLRSNE 376 (873)
T ss_pred ----------cc--ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH--------hhhhhhhcCcCCe
Confidence 11 133444666665556667777888899999999998888888888 8899999999999
Q ss_pred ccccCc---ccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccC
Q 047139 523 LSGEIP---PSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSH 593 (611)
Q Consensus 523 l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~ 593 (611)
+++.+. ..|..+++|+.|++.+|++. .||...+.+++.|++|||.+|.|..+-|..|..+ .|++|-+..
T Consensus 377 ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 377 LSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred EEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 987655 35788999999999999998 8888777779999999999999998888899888 888777653
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-34 Score=285.06 Aligned_cols=380 Identities=25% Similarity=0.281 Sum_probs=256.3
Q ss_pred CEEEccCCCCCCCCCccCCCC--CCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCC
Q 047139 157 LSLDLSSNDLQGDIPDGFSSL--NSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSS 234 (611)
Q Consensus 157 ~~L~L~~n~~~~~~p~~l~~l--~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~ 234 (611)
+.||.+++.+....-..+.+. ..-+.||+++|. +...-+..|.++++|+++++..|.++ .+|....... +
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sg------h 126 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESG------H 126 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccc-cccCcHHHHhcCCcceeeeeccchhh-hccccccccc------c
Confidence 456777766553222222221 123457777776 45555566667777777777766665 3444333333 5
Q ss_pred CcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccC
Q 047139 235 LARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSD 314 (611)
Q Consensus 235 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 314 (611)
|+.|+|.+|.|+..-.+.+..++.|+.|||+.|.++..--..|..-.++++|+|++|.++......|..+.+|..|.|++
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr 206 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR 206 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc
Confidence 66666666666655555566666666666666666533333455545666666666666655555566666666666666
Q ss_pred CccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccc
Q 047139 315 NQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASIS 394 (611)
Q Consensus 315 n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~ 394 (611)
|+++. +|...|+++++|+.|++..|+. .-.--..|.+++
T Consensus 207 Nritt-Lp~r~Fk~L~~L~~LdLnrN~i---------------------------rive~ltFqgL~------------- 245 (873)
T KOG4194|consen 207 NRITT-LPQRSFKRLPKLESLDLNRNRI---------------------------RIVEGLTFQGLP------------- 245 (873)
T ss_pred Ccccc-cCHHHhhhcchhhhhhccccce---------------------------eeehhhhhcCch-------------
Confidence 66654 4444566666666666655332 100011233444
Q ss_pred cccchhHHhcCCCCCEEEccCcccccccCcccc-cCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeeccccc
Q 047139 395 DTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLV-FRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQ 473 (611)
Q Consensus 395 ~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~ 473 (611)
+|+.+.+..|++..--...+. ...++.++++.|+++..-..|+-.++.| +.|++|+|.|...-++
T Consensus 246 ------------Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L--~~L~lS~NaI~rih~d 311 (873)
T KOG4194|consen 246 ------------SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSL--EQLDLSYNAIQRIHID 311 (873)
T ss_pred ------------hhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchh--hhhccchhhhheeecc
Confidence 455555555554422222222 2367777777777776666677778877 7899999999988899
Q ss_pred chhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChh
Q 047139 474 SVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPA 553 (611)
Q Consensus 474 ~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 553 (611)
.+..+++|++|+|+.|+|+.+....|.+ ++.|++|+|++|.+...-...|..+.+|++|||++|.+++.|-+
T Consensus 312 ~WsftqkL~~LdLs~N~i~~l~~~sf~~--------L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 312 SWSFTQKLKELDLSSNRITRLDEGSFRV--------LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred hhhhcccceeEeccccccccCChhHHHH--------HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 9999999999999999999877666665 99999999999999977778899999999999999999877654
Q ss_pred --HHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCcccccc
Q 047139 554 --WIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDF 607 (611)
Q Consensus 554 --~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~~~~~ 607 (611)
..+..+++|+.|++.+|++..+--..|..+..|+.|||.+|.+...=|..|..+
T Consensus 384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 344569999999999999995545689999999999999999987777777654
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=8.9e-38 Score=297.45 Aligned_cols=454 Identities=26% Similarity=0.327 Sum_probs=339.1
Q ss_pred CCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccc
Q 047139 118 QLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSR 197 (611)
Q Consensus 118 ~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~ 197 (611)
.-..++.+++++|.++ .+.+.+.++..|.+|++++|+++ ..|.+++.+..++.++.++|.+ ..+|+
T Consensus 43 ~qv~l~~lils~N~l~-----------~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l--s~lp~ 108 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLE-----------VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL--SELPE 108 (565)
T ss_pred hhcchhhhhhccCchh-----------hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH--hhccH
Confidence 3445667777777665 34556889999999999999999 8899999999999999999985 56999
Q ss_pred cCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCc
Q 047139 198 NLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSL 277 (611)
Q Consensus 198 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 277 (611)
.++.+.+|++++.++|.+... ++.++.+- .++.++..+|++. ..|..+..+.++..+++.+|++... |+..
T Consensus 109 ~i~s~~~l~~l~~s~n~~~el-~~~i~~~~------~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l-~~~~ 179 (565)
T KOG0472|consen 109 QIGSLISLVKLDCSSNELKEL-PDSIGRLL------DLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL-PENH 179 (565)
T ss_pred HHhhhhhhhhhhccccceeec-CchHHHHh------hhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhC-CHHH
Confidence 999999999999999998854 44555554 8999999999999 8899999999999999999999854 4444
Q ss_pred cCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCc
Q 047139 278 GNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPF 357 (611)
Q Consensus 278 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 357 (611)
-+++.|+.||...|.++ .+|+.++.+.+|..|+|..|++.. .| .|.+|..|++++++.|+...+..+. ...+.
T Consensus 180 i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~-lP--ef~gcs~L~Elh~g~N~i~~lpae~---~~~L~ 252 (565)
T KOG0472|consen 180 IAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF-LP--EFPGCSLLKELHVGENQIEMLPAEH---LKHLN 252 (565)
T ss_pred HHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc-CC--CCCccHHHHHHHhcccHHHhhHHHH---hcccc
Confidence 45999999999998886 799999999999999999999864 56 5899999999999986553333222 23567
Q ss_pred ceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccC---CCceE
Q 047139 358 KLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFR---FPGSV 434 (611)
Q Consensus 358 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~---~l~~l 434 (611)
++..||++.|++. +.|+.+.-+.+|++||+++|.++ .+|..++.. .|+.|-+.+|.+...-.+.+... -++++
T Consensus 253 ~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl--hL~~L~leGNPlrTiRr~ii~~gT~~vLKyL 328 (565)
T KOG0472|consen 253 SLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL--HLKFLALEGNPLRTIRREIISKGTQEVLKYL 328 (565)
T ss_pred cceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc--eeeehhhcCCchHHHHHHHHcccHHHHHHHH
Confidence 8899999999876 68888888999999999999998 466666665 78888888887642111000000 01111
Q ss_pred E-------ccCC----cccccCCCC-CCCcc-eeecCcccCCCCeeecccccchhccCC---CCeEECcCCCCC------
Q 047139 435 D-------LSSN----RFEGPIPLW-SSNLT-KLYLRDLDISFNSINGSIPQSVGNLKQ---LLTLVISNNNLS------ 492 (611)
Q Consensus 435 ~-------ls~n----~~~~~~p~~-~~~l~-~L~l~~L~Ls~n~l~~~~~~~l~~l~~---L~~L~L~~n~i~------ 492 (611)
. ++.- .-.+..|.+ +.... ....+.|++++-+++ .+|.....-.+ .+.++++.|++.
T Consensus 329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L 407 (565)
T KOG0472|consen 329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRL 407 (565)
T ss_pred HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhh
Confidence 0 0000 000111111 11100 001133444555554 33433322222 455555555554
Q ss_pred ----------CCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCC
Q 047139 493 ----------DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSL 562 (611)
Q Consensus 493 ----------~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L 562 (611)
.++. +..+.+|..++.+++|..|+|++|.+. .+|..++.+..|+.||++.|+|. .+|..+.. +..+
T Consensus 408 ~~lkelvT~l~lsn-n~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~-lq~l 483 (565)
T KOG0472|consen 408 VELKELVTDLVLSN-NKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYE-LQTL 483 (565)
T ss_pred HHHHHHHHHHHhhc-CccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhh-HHHH
Confidence 1222 223367888899999999999999988 88999999999999999999998 89999887 7888
Q ss_pred cEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCccccccCCCC
Q 047139 563 SILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT 611 (611)
Q Consensus 563 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~~~~~~~l~ 611 (611)
+.+-.++|++...-|+.+.++.+|.+||+.+|.+ ..||+.++++++|+
T Consensus 484 Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl-q~IPp~LgnmtnL~ 531 (565)
T KOG0472|consen 484 ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL-QQIPPILGNMTNLR 531 (565)
T ss_pred HHHHhccccccccChHHhhhhhhcceeccCCCch-hhCChhhcccccee
Confidence 8888888999966666699999999999999998 48999999999875
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.98 E-value=5.7e-35 Score=291.98 Aligned_cols=386 Identities=28% Similarity=0.432 Sum_probs=242.2
Q ss_pred ccce-eeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEE
Q 047139 106 HELR-GKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLD 184 (611)
Q Consensus 106 ~~l~-~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 184 (611)
+.++ +.+|..+..++.++-|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++.||.+.
T Consensus 17 NDFsg~~FP~~v~qMt~~~WLkLnrt~L~-----------~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 17 NDFSGDRFPHDVEQMTQMTWLKLNRTKLE-----------QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred CcCCCCcCchhHHHhhheeEEEechhhhh-----------hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 4444 345555555555555555544443 45555555555555555555554 3333455555555555
Q ss_pred ccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEc
Q 047139 185 LSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLEL 264 (611)
Q Consensus 185 Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 264 (611)
++.|++.+..+|..+.++..|..||+++|++ . ..|..+...+++-.|+|
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL------------------------------~-EvP~~LE~AKn~iVLNL 133 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQL------------------------------R-EVPTNLEYAKNSIVLNL 133 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhh------------------------------h-hcchhhhhhcCcEEEEc
Confidence 5555544444555555555555555555554 4 44555555555555555
Q ss_pred cCCcccccCCCC-ccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCC
Q 047139 265 WYNSFLGSIPPS-LGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNS 343 (611)
Q Consensus 265 ~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~ 343 (611)
++|++. .+|.. +.+++.|-.|||++|.+. .+|+.+..+..|+.|+|++|.+.-.-- ..+-.+++|+.|.+++.+-
T Consensus 134 S~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQL-rQLPsmtsL~vLhms~TqR- 209 (1255)
T KOG0444|consen 134 SYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQL-RQLPSMTSLSVLHMSNTQR- 209 (1255)
T ss_pred ccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHH-hcCccchhhhhhhcccccc-
Confidence 555554 33432 345555555566655554 444455555566666666665432211 1222333444444444211
Q ss_pred CceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccC
Q 047139 344 SLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIP 423 (611)
Q Consensus 344 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~ 423 (611)
-...+|..+..+.+|..+|++.|.+. .+|+.+... ++|+.|++|+|+++..-.
T Consensus 210 -------------------------Tl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l-~~LrrLNLS~N~iteL~~ 262 (1255)
T KOG0444|consen 210 -------------------------TLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKL-RNLRRLNLSGNKITELNM 262 (1255)
T ss_pred -------------------------hhhcCCCchhhhhhhhhccccccCCC-cchHHHhhh-hhhheeccCcCceeeeec
Confidence 11246666777778888888888776 677777764 688888888888772111
Q ss_pred cccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccC
Q 047139 424 NTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEI 503 (611)
Q Consensus 424 ~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~i 503 (611)
... ... .+++|++|.|+++ .+|.+++.+++|+.|.+.+|+++ |.| |
T Consensus 263 -~~~--------------------~W~-----~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~------FeG-i 308 (1255)
T KOG0444|consen 263 -TEG--------------------EWE-----NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT------FEG-I 308 (1255)
T ss_pred -cHH--------------------HHh-----hhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc------ccC-C
Confidence 000 011 3366666999998 89999999999999999999875 665 9
Q ss_pred cccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCcccc-C
Q 047139 504 PESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELC-K 582 (611)
Q Consensus 504 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~-~ 582 (611)
|..|+.+.+|+++..++|.+. .+|+.+..|..|+.|.|+.|++. ++|+.+.- ++.|++||+..|+-- ..|+.-. .
T Consensus 309 PSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHl-L~~l~vLDlreNpnL-VMPPKP~da 384 (1255)
T KOG0444|consen 309 PSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHL-LPDLKVLDLRENPNL-VMPPKPNDA 384 (1255)
T ss_pred ccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhh-cCCcceeeccCCcCc-cCCCCcchh
Confidence 999999999999999999998 89999999999999999999998 89999986 999999999999866 3443222 2
Q ss_pred CCCCCEeeccC---C--cCccCCCcc
Q 047139 583 LSALHILDLSH---N--NLLGPIPYC 603 (611)
Q Consensus 583 l~~L~~L~ls~---n--~l~g~iP~~ 603 (611)
-++|+.-++.. + ++.|..|..
T Consensus 385 ~~~lefYNIDFSLq~QlrlAG~~pas 410 (1255)
T KOG0444|consen 385 RKKLEFYNIDFSLQHQLRLAGQMPAS 410 (1255)
T ss_pred hhcceeeecceehhhHHhhccCCccc
Confidence 23454433321 1 456777654
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=4.1e-33 Score=291.26 Aligned_cols=404 Identities=27% Similarity=0.353 Sum_probs=306.2
Q ss_pred CCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhh
Q 047139 145 TLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFID 224 (611)
Q Consensus 145 ~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 224 (611)
..|..+..+++|+.|+++.|.|. ..|.+..++.+|++++|.+|+. ...|.++..+++|++|++++|.+. .+|..+.
T Consensus 59 ~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l--~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~ 134 (1081)
T KOG0618|consen 59 SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRL--QSLPASISELKNLQYLDLSFNHFG-PIPLVIE 134 (1081)
T ss_pred cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchh--hcCchhHHhhhcccccccchhccC-CCchhHH
Confidence 67777888888888888888887 6778888888888888888874 457888888888888888888875 5666666
Q ss_pred cCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCC
Q 047139 225 GLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQL 304 (611)
Q Consensus 225 ~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 304 (611)
.++ .++.+..++|.....++ ... ++++++..|.+.+.++..+..++. .|+|++|.+. . ..+..+
T Consensus 135 ~lt------~~~~~~~s~N~~~~~lg----~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~ 198 (1081)
T KOG0618|consen 135 VLT------AEEELAASNNEKIQRLG----QTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNL 198 (1081)
T ss_pred hhh------HHHHHhhhcchhhhhhc----ccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhc
Confidence 666 77778888883222222 222 778888888888888887777766 7888888876 2 236677
Q ss_pred CCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCC
Q 047139 305 SAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELT 384 (611)
Q Consensus 305 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 384 (611)
.+|+.+....|++... --.-++|+.|+...|... ......-+.+|++++++.+.+. .+|+|+..+.+|+
T Consensus 199 ~~l~~l~c~rn~ls~l-----~~~g~~l~~L~a~~n~l~-----~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle 267 (1081)
T KOG0618|consen 199 ANLEVLHCERNQLSEL-----EISGPSLTALYADHNPLT-----TLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLE 267 (1081)
T ss_pred cchhhhhhhhcccceE-----EecCcchheeeeccCcce-----eeccccccccceeeecchhhhh-cchHHHHhcccce
Confidence 8888888888877542 223467888888885442 1112233568999999999987 4669999999999
Q ss_pred EEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccc-cCCCceEEccCCcccccCCCCCC-------------
Q 047139 385 TLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLV-FRFPGSVDLSSNRFEGPIPLWSS------------- 450 (611)
Q Consensus 385 ~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~~~l~~l~ls~n~~~~~~p~~~~------------- 450 (611)
.++...|+++ .+|..+... .+|+++++..|.+. .+|.... ...+++||+..|++....+..+.
T Consensus 268 ~l~~n~N~l~-~lp~ri~~~-~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~ 344 (1081)
T KOG0618|consen 268 ALNANHNRLV-ALPLRISRI-TSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSS 344 (1081)
T ss_pred EecccchhHH-hhHHHHhhh-hhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhh
Confidence 9999999995 667666654 57888888888877 4444444 45788888888877633221111
Q ss_pred ----------CcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcc-cccCcCCCCEEECc
Q 047139 451 ----------NLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPE-SIGSLLTIRFLVLS 519 (611)
Q Consensus 451 ----------~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~-~~~~l~~L~~L~Ls 519 (611)
.-..-.|+.|++.+|.++...-+.+.+.++|+.|+|++|++. .+|. .+.++..|++|+||
T Consensus 345 n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~---------~fpas~~~kle~LeeL~LS 415 (1081)
T KOG0618|consen 345 NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN---------SFPASKLRKLEELEELNLS 415 (1081)
T ss_pred ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc---------cCCHHHHhchHHhHHHhcc
Confidence 001112466888999999988888999999999999999887 4444 35678899999999
Q ss_pred CCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCc
Q 047139 520 NNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNN 595 (611)
Q Consensus 520 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~ 595 (611)
+|+++ .+|.++.++..|++|..-+|++. ..| .+.+ +++|+++|+|.|+++...-..-...+.|++||+++|.
T Consensus 416 GNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~-l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 416 GNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQ-LPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhh-cCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 99999 88999999999999999999998 788 6766 9999999999999986544443445899999999996
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.5e-32 Score=273.22 Aligned_cols=368 Identities=25% Similarity=0.356 Sum_probs=279.5
Q ss_pred cCCCCCCEEEccCCCCC-CCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCccc
Q 047139 151 FNITNLLSLDLSSNDLQ-GDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSEC 229 (611)
Q Consensus 151 ~~l~~L~~L~L~~n~~~-~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~ 229 (611)
+-++..+-.|+++|.++ +..|.....+++++.|.|...++ ..+|+.++.+.+|++|.+++|++... -..+..++
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L--~~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp-- 78 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL--EQVPEELSRLQKLEHLSMAHNQLISV-HGELSDLP-- 78 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh--hhChHHHHHHhhhhhhhhhhhhhHhh-hhhhccch--
Confidence 34566788899999988 57888888889999998888874 56888888888899998888887632 23344444
Q ss_pred CCCCCCcEEEccCCCCC-ccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCC
Q 047139 230 INSSSLARLELGYNQLT-GNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIR 308 (611)
Q Consensus 230 ~~~~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 308 (611)
.|+.+++..|++. ..+|..+.++..|+.|||++|++. ..|..+...+++-+|+|++|++.......|.+++.|-
T Consensus 79 ----~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 79 ----RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred ----hhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence 7888888888775 456777778888888888888877 6777777778888888888888743333456777788
Q ss_pred EEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEc
Q 047139 309 VLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVL 388 (611)
Q Consensus 309 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 388 (611)
.|||++|++.. .|+ ....+..|++|.+++|+. .-.--..+..+++|+.|.+
T Consensus 154 fLDLS~NrLe~-LPP-Q~RRL~~LqtL~Ls~NPL---------------------------~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 154 FLDLSNNRLEM-LPP-QIRRLSMLQTLKLSNNPL---------------------------NHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred hhccccchhhh-cCH-HHHHHhhhhhhhcCCChh---------------------------hHHHHhcCccchhhhhhhc
Confidence 88888888765 444 466777777777776433 1111122334567777888
Q ss_pred cCcccc-cccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCee
Q 047139 389 NSASIS-DTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSI 467 (611)
Q Consensus 389 ~~n~l~-~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l 467 (611)
++.+-+ ..+|..+-.+ .+|..+|+|.|.+. .+| ..+-.+..| +.|+||+|.+
T Consensus 205 s~TqRTl~N~Ptsld~l-~NL~dvDlS~N~Lp-~vP-----------------------ecly~l~~L--rrLNLS~N~i 257 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDL-HNLRDVDLSENNLP-IVP-----------------------ECLYKLRNL--RRLNLSGNKI 257 (1255)
T ss_pred ccccchhhcCCCchhhh-hhhhhccccccCCC-cch-----------------------HHHhhhhhh--heeccCcCce
Confidence 777544 4466666554 57777777777766 333 333333333 5566688888
Q ss_pred ecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccc-ccCcccccCCCCCCEEECCCCc
Q 047139 468 NGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLS-GEIPPSLKNCSLMDSLDLGENQ 546 (611)
Q Consensus 468 ~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~ 546 (611)
+ .+....+...+|++|+++.|+++ .+|..+..++.|+.|.+.+|+++ ..+|..++++..|+++..++|+
T Consensus 258 t-eL~~~~~~W~~lEtLNlSrNQLt---------~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~ 327 (1255)
T KOG0444|consen 258 T-ELNMTEGEWENLETLNLSRNQLT---------VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK 327 (1255)
T ss_pred e-eeeccHHHHhhhhhhccccchhc---------cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence 7 45555677788999999999887 89999999999999999999987 4689999999999999999999
Q ss_pred CcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCc
Q 047139 547 LSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLL 597 (611)
Q Consensus 547 l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 597 (611)
+. -.|..+.. |..|+.|.|++|++. .+|+.+.-++.|.+||+..|+-.
T Consensus 328 LE-lVPEglcR-C~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 328 LE-LVPEGLCR-CVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred cc-cCchhhhh-hHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 98 89999998 999999999999999 89999999999999999999754
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=1.3e-31 Score=280.02 Aligned_cols=434 Identities=28% Similarity=0.372 Sum_probs=334.2
Q ss_pred eCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCC
Q 047139 112 ISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFL 191 (611)
Q Consensus 112 ~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~ 191 (611)
+|..+..-.+++.|+++.|.+ ....-+.+.+.-+|+.||+++|.+. ..|..+..+.+|+.|+++.|.+
T Consensus 13 ip~~i~~~~~~~~ln~~~N~~----------l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i- 80 (1081)
T KOG0618|consen 13 IPEQILNNEALQILNLRRNSL----------LSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI- 80 (1081)
T ss_pred cchhhccHHHHHhhhcccccc----------ccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH-
Confidence 455555545566666666543 2222234555666999999999988 7888999999999999999986
Q ss_pred cccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccc
Q 047139 192 EGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLG 271 (611)
Q Consensus 192 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 271 (611)
..+|.+..++.+|+++.|..|.+. ..|..+..+. +|++|++++|++. .+|..+..+..++.+..++|....
T Consensus 81 -~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lk------nl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~ 151 (1081)
T KOG0618|consen 81 -RSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELK------NLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQ 151 (1081)
T ss_pred -hhCchhhhhhhcchhheeccchhh-cCchhHHhhh------cccccccchhccC-CCchhHHhhhHHHHHhhhcchhhh
Confidence 568899999999999999999876 5677777777 9999999999998 889999999999999999993322
Q ss_pred cCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccC
Q 047139 272 SIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISF 351 (611)
Q Consensus 272 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 351 (611)
. ++... ++.+++..|.+.+.++..+..++. .|+|++|.+.. ..+..+..|+.+....|+...+..
T Consensus 152 ~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~----~dls~~~~l~~l~c~rn~ls~l~~---- 216 (1081)
T KOG0618|consen 152 R----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV----LDLSNLANLEVLHCERNQLSELEI---- 216 (1081)
T ss_pred h----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhhh----hhhhhccchhhhhhhhcccceEEe----
Confidence 2 33333 888899999999888888888777 89999999862 257888899999888866644332
Q ss_pred CCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccc-cCC
Q 047139 352 DWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLV-FRF 430 (611)
Q Consensus 352 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~~~ 430 (611)
..++++.|+.+.|.+....+. ..-.+|++++++.|+++ .+|+|+... .+|+.++..+|+++ .+|..+. ...
T Consensus 217 ---~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~-~nle~l~~n~N~l~-~lp~ri~~~~~ 288 (1081)
T KOG0618|consen 217 ---SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGAC-ANLEALNANHNRLV-ALPLRISRITS 288 (1081)
T ss_pred ---cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhc-ccceEecccchhHH-hhHHHHhhhhh
Confidence 245889999999988743322 12368999999999998 567888874 79999999999996 5555544 448
Q ss_pred CceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhc-cCC-CCeEECcCCCCC----------------
Q 047139 431 PGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGN-LKQ-LLTLVISNNNLS---------------- 492 (611)
Q Consensus 431 l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~-l~~-L~~L~L~~n~i~---------------- 492 (611)
++.+++..|.+. .+|.....++.+ ++|+|..|++. ..|+.+-. ... |..|..+.|++.
T Consensus 289 L~~l~~~~nel~-yip~~le~~~sL--~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~L 364 (1081)
T KOG0618|consen 289 LVSLSAAYNELE-YIPPFLEGLKSL--RTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQEL 364 (1081)
T ss_pred HHHHHhhhhhhh-hCCCccccccee--eeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHH
Confidence 889999999887 455555556655 66777888887 45543322 111 344444444443
Q ss_pred CCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcC
Q 047139 493 DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHF 572 (611)
Q Consensus 493 ~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l 572 (611)
.+.+|.|+...-+.+.+...|+.|+|++|++..-....+.++..|+.|+||+|+++ .+|..+.. ++.|++|..-+|++
T Consensus 365 ylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~-~~~L~tL~ahsN~l 442 (1081)
T KOG0618|consen 365 YLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVAN-LGRLHTLRAHSNQL 442 (1081)
T ss_pred HHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHh-hhhhHHHhhcCCce
Confidence 34556666666667778999999999999998443457899999999999999999 89999987 99999999999999
Q ss_pred cccCCccccCCCCCCEeeccCCcCc
Q 047139 573 NGTIPSELCKLSALHILDLSHNNLL 597 (611)
Q Consensus 573 ~~~~p~~l~~l~~L~~L~ls~n~l~ 597 (611)
. ..| ++..++.|+++|+|.|+++
T Consensus 443 ~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 443 L-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred e-ech-hhhhcCcceEEecccchhh
Confidence 9 788 8899999999999999987
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=4.4e-23 Score=240.41 Aligned_cols=346 Identities=22% Similarity=0.238 Sum_probs=197.6
Q ss_pred cCCCCCCCCEEEcccccC------CCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccc
Q 047139 198 NLGTLCNLQTLKLSLNQF------SGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLG 271 (611)
Q Consensus 198 ~l~~l~~L~~L~l~~n~l------~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 271 (611)
.|.++++|+.|.+..+.. ....|+.+..++ ++|+.|++.++.+. .+|..+ ...+|++|++.+|++.
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp-----~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLP-----PKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE- 624 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcC-----cccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-
Confidence 455666666666654432 222344444433 15666666666655 555555 3466666666666655
Q ss_pred cCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccC
Q 047139 272 SIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISF 351 (611)
Q Consensus 272 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 351 (611)
.+|..+..+++|++|+++++.....+|. +..+++|+.|++++|.....+|. .+.++++|+.|++++|.+ + ..++.
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~--L-~~Lp~ 699 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCEN--L-EILPT 699 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCC--c-CccCC
Confidence 4555566666666666666554444543 55666666666666654445554 456666666666665432 0 11111
Q ss_pred CCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCC
Q 047139 352 DWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFP 431 (611)
Q Consensus 352 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l 431 (611)
.. .+.+|+.|++++|...+.+|.. .++|+.|++++|.+. .+|..+ .+++|++|++.++... .+.
T Consensus 700 ~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~-~l~-------- 763 (1153)
T PLN03210 700 GI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSE-KLW-------- 763 (1153)
T ss_pred cC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc--cccccccccccccchh-hcc--------
Confidence 11 2334444444444333333321 234455555555443 233322 1234444444332211 000
Q ss_pred ceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcC
Q 047139 432 GSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLL 511 (611)
Q Consensus 432 ~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~ 511 (611)
+.+....+....... .|++|++++|...+.+|..++++++|+.|++++|... +.+|..+ +++
T Consensus 764 -------~~~~~l~~~~~~~~~--sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L--------~~LP~~~-~L~ 825 (1153)
T PLN03210 764 -------ERVQPLTPLMTMLSP--SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL--------ETLPTGI-NLE 825 (1153)
T ss_pred -------ccccccchhhhhccc--cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCc--------CeeCCCC-Ccc
Confidence 000000000000011 2355666888877788888888888999988887421 1456555 578
Q ss_pred CCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeec
Q 047139 512 TIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDL 591 (611)
Q Consensus 512 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 591 (611)
+|+.|++++|.....+|.. .++|+.|+|++|.++ .+|.++.. +++|++|++++|+--..+|..+..+++|+.+++
T Consensus 826 sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~-l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l 900 (1153)
T PLN03210 826 SLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEK-FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDF 900 (1153)
T ss_pred ccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhc-CCCCCEEECCCCCCcCccCcccccccCCCeeec
Confidence 8889999888655556543 367888899998887 78888875 888999999886555568888888888888888
Q ss_pred cCCc
Q 047139 592 SHNN 595 (611)
Q Consensus 592 s~n~ 595 (611)
++|.
T Consensus 901 ~~C~ 904 (1153)
T PLN03210 901 SDCG 904 (1153)
T ss_pred CCCc
Confidence 8885
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=8.1e-23 Score=238.23 Aligned_cols=349 Identities=21% Similarity=0.279 Sum_probs=234.2
Q ss_pred CccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCC-CCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCC
Q 047139 113 SPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNIT-NLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFL 191 (611)
Q Consensus 113 ~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~ 191 (611)
+.+|..+++|++|.+..+.... .+.+...+|..+..++ +|+.|++.++.+. .+|..+ ...+|++|++++|.+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~----~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l- 623 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQ----KKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKL- 623 (1153)
T ss_pred HHHHhcCccccEEEEecccccc----cccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccc-
Confidence 3468889999999987664321 1233446777777764 6999999999887 778777 578999999999985
Q ss_pred cccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccc
Q 047139 192 EGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLG 271 (611)
Q Consensus 192 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 271 (611)
..++..+..+++|++|+++++.....+|. +..++ +|++|++++|.....+|..+..+++|++|++++|...+
T Consensus 624 -~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~------~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 624 -EKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMAT------NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred -cccccccccCCCCCEEECCCCCCcCcCCc-cccCC------cccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC
Confidence 45788889999999999998875556664 44455 99999999998777899999999999999999987666
Q ss_pred cCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeec--
Q 047139 272 SIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNI-- 349 (611)
Q Consensus 272 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-- 349 (611)
.+|..+ ++++|++|++++|...+.+|.. .++|+.|++++|.+.. +|. . ..+++|++|.+.++....+....
T Consensus 696 ~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~-~-~~l~~L~~L~l~~~~~~~l~~~~~~ 768 (1153)
T PLN03210 696 ILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPS-N-LRLENLDELILCEMKSEKLWERVQP 768 (1153)
T ss_pred ccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccc-c-ccccccccccccccchhhccccccc
Confidence 888766 7899999999999766666643 4678999999998764 554 2 25788888888764331211111
Q ss_pred --cCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccc
Q 047139 350 --SFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLV 427 (611)
Q Consensus 350 --~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 427 (611)
+.....+++|+.|++++|.....+|.+++++++|+.|++++|...+. +|....
T Consensus 769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~-------------------------LP~~~~ 823 (1153)
T PLN03210 769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET-------------------------LPTGIN 823 (1153)
T ss_pred cchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe-------------------------eCCCCC
Confidence 00011123455555555544444555555555555555555443333 443332
Q ss_pred cCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccc
Q 047139 428 FRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESI 507 (611)
Q Consensus 428 ~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~ 507 (611)
...++.+++++|.....+|....+++.| ++++|.++ .+|.++..+++|++|++++|+ .+. .+|..+
T Consensus 824 L~sL~~L~Ls~c~~L~~~p~~~~nL~~L-----~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~-------~L~-~l~~~~ 889 (1153)
T PLN03210 824 LESLESLDLSGCSRLRTFPDISTNISDL-----NLSRTGIE-EVPWWIEKFSNLSFLDMNGCN-------NLQ-RVSLNI 889 (1153)
T ss_pred ccccCEEECCCCCccccccccccccCEe-----ECCCCCCc-cChHHHhcCCCCCEEECCCCC-------CcC-ccCccc
Confidence 2344555555544434444433444433 34777776 567777777777777777753 222 355566
Q ss_pred cCcCCCCEEECcCCc
Q 047139 508 GSLLTIRFLVLSNNH 522 (611)
Q Consensus 508 ~~l~~L~~L~Ls~n~ 522 (611)
..+++|+.+++++|.
T Consensus 890 ~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 890 SKLKHLETVDFSDCG 904 (1153)
T ss_pred ccccCCCeeecCCCc
Confidence 667777777777774
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.1e-21 Score=212.57 Aligned_cols=264 Identities=25% Similarity=0.298 Sum_probs=142.0
Q ss_pred CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEcc
Q 047139 234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS 313 (611)
Q Consensus 234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 313 (611)
.-..|+++++.++ .+|..+. ++|+.|++.+|+++ .+|. .+++|++|++++|+++ .+|.. .++|+.|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence 4567777777777 5676664 36788888888777 4554 2467788888888777 34532 3567777777
Q ss_pred CCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCccc
Q 047139 314 DNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASI 393 (611)
Q Consensus 314 ~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l 393 (611)
+|.+.. +|. ..++|+.|++++ |.+. .+|. ..++|+.|++++|++
T Consensus 271 ~N~L~~-Lp~----lp~~L~~L~Ls~---------------------------N~Lt-~LP~---~p~~L~~LdLS~N~L 314 (788)
T PRK15387 271 SNPLTH-LPA----LPSGLCKLWIFG---------------------------NQLT-SLPV---LPPGLQELSVSDNQL 314 (788)
T ss_pred CCchhh-hhh----chhhcCEEECcC---------------------------Cccc-cccc---cccccceeECCCCcc
Confidence 777653 222 113344444444 3322 1222 124567777777766
Q ss_pred ccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeeccccc
Q 047139 394 SDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQ 473 (611)
Q Consensus 394 ~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~ 473 (611)
++ +|. ...+|+.|++++|++++ +|... ..|+.|++++|++++ +|....+++.| ++++|.+++ +|.
T Consensus 315 ~~-Lp~----lp~~L~~L~Ls~N~L~~-LP~lp--~~Lq~LdLS~N~Ls~-LP~lp~~L~~L-----~Ls~N~L~~-LP~ 379 (788)
T PRK15387 315 AS-LPA----LPSELCKLWAYNNQLTS-LPTLP--SGLQELSVSDNQLAS-LPTLPSELYKL-----WAYNNRLTS-LPA 379 (788)
T ss_pred cc-CCC----CcccccccccccCcccc-ccccc--cccceEecCCCccCC-CCCCCccccee-----hhhcccccc-Ccc
Confidence 64 333 12356777777777763 44311 245666666666653 33333333332 335555552 343
Q ss_pred chhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChh
Q 047139 474 SVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPA 553 (611)
Q Consensus 474 ~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 553 (611)
. .++|+.|++++|+++ .+|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|.
T Consensus 380 l---~~~L~~LdLs~N~Lt---------~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~ 439 (788)
T PRK15387 380 L---PSGLKELIVSGNRLT---------SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPE 439 (788)
T ss_pred c---ccccceEEecCCccc---------CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccCh
Confidence 2 234555555555544 22221 134555555555555 24432 124455555555555 4555
Q ss_pred HHhhcCCCCcEEECcCCcCcccCCccc
Q 047139 554 WIGESMPSLSILRLRSNHFNGTIPSEL 580 (611)
Q Consensus 554 ~l~~~l~~L~~L~ls~n~l~~~~p~~l 580 (611)
.+.. +++|+.|+|++|+++|.+|..+
T Consensus 440 sl~~-L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 440 SLIH-LSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred HHhh-ccCCCeEECCCCCCCchHHHHH
Confidence 5543 5555555555555555555443
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=4.5e-23 Score=197.22 Aligned_cols=250 Identities=25% Similarity=0.267 Sum_probs=175.0
Q ss_pred eEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccC-CCCCcccccccCCCCCCCCEEEccc
Q 047139 134 VLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSG-NSFLEGQLSRNLGTLCNLQTLKLSL 212 (611)
Q Consensus 134 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~-n~~~~~~~~~~l~~l~~L~~L~l~~ 212 (611)
.++|..|.|+...|.+|+.+++||.|||++|.|+.+-|++|.++.+|..|-+.+ |+ ++...-..|+++..|+.|.+.-
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk-I~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK-ITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc-hhhhhhhHhhhHHHHHHHhcCh
Confidence 556666677766777899999999999999999988899999998888877777 66 4544446688899999999999
Q ss_pred ccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCccc------------ccCCCCccCc
Q 047139 213 NQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFL------------GSIPPSLGNL 280 (611)
Q Consensus 213 n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~------------~~~p~~l~~l 280 (611)
|++.....+.+..++ +|..|.+.+|.+...--..+..+..++.+.+..|.+. -..|..++..
T Consensus 150 n~i~Cir~~al~dL~------~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 150 NHINCIRQDALRDLP------SLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred hhhcchhHHHHHHhh------hcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 998888888888888 8888999999887333337788888888888877632 1122222222
Q ss_pred ccCceEEec-------------------------CCccccCCC-cCCCCCCCCCEEEccCCccccccChhhhcCCCCCCE
Q 047139 281 TFLEELYLT-------------------------SNQMNGKFP-ESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEE 334 (611)
Q Consensus 281 ~~L~~L~L~-------------------------~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 334 (611)
....-..+. .+...+..| ..|..+++|++|+|++|++++.-+ ..|.+...+++
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~-~aFe~~a~l~e 302 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED-GAFEGAAELQE 302 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh-hhhcchhhhhh
Confidence 222211121 222222222 236778888888888888876444 47888888888
Q ss_pred EEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccc
Q 047139 335 LSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASIS 394 (611)
Q Consensus 335 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~ 394 (611)
|.+..|+...+... .+..+..|+.|+|.+|+++...|..|.....|.+|.+-.|.+.
T Consensus 303 L~L~~N~l~~v~~~---~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSG---MFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhcCcchHHHHHHH---hhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 88887555333222 2344557777888888888777777877888888887777654
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2.1e-20 Score=202.79 Aligned_cols=82 Identities=26% Similarity=0.323 Sum_probs=65.6
Q ss_pred CcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCC
Q 047139 458 RDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLM 537 (611)
Q Consensus 458 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 537 (611)
+.|++++|.+++ +|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|..+.++++|
T Consensus 385 ~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls---------sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L 447 (788)
T PRK15387 385 KELIVSGNRLTS-LPVL---PSELKELMVSGNRLT---------SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSE 447 (788)
T ss_pred ceEEecCCcccC-CCCc---ccCCCEEEccCCcCC---------CCCcc---hhhhhhhhhccCccc-ccChHHhhccCC
Confidence 445558888874 5543 367999999999877 34432 246889999999999 789999999999
Q ss_pred CEEECCCCcCcccChhHHh
Q 047139 538 DSLDLGENQLSGNIPAWIG 556 (611)
Q Consensus 538 ~~L~Ls~N~l~~~ip~~l~ 556 (611)
+.|+|++|++++..|..+.
T Consensus 448 ~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 448 TTVNLEGNPLSERTLQALR 466 (788)
T ss_pred CeEECCCCCCCchHHHHHH
Confidence 9999999999998888763
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=8.1e-22 Score=188.68 Aligned_cols=401 Identities=21% Similarity=0.192 Sum_probs=195.7
Q ss_pred CCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEccc-ccCCCccchhhhcCcccCCC
Q 047139 154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSL-NQFSGEVSDFIDGLSECINS 232 (611)
Q Consensus 154 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~~~~~ 232 (611)
..-+.++|..|+|+...|.+|+.+++||.|||++|. ++..-|.+|..++.|..|-+.+ |+|+....+.|+++.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~----- 140 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS----- 140 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH-----
Confidence 345677888888886666777778888888887777 5556666666666665555544 666655555555555
Q ss_pred CCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCC-CccCcccCceEEecCCccccCCCcCCCCCCCCCEEE
Q 047139 233 SSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP-SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLE 311 (611)
Q Consensus 233 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 311 (611)
.|+.|.+.-|++.-.....|..++++..|.+.+|.+. .++. .|..+..++.+.+..|.+.. ..+++.+....
T Consensus 141 -slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~ 213 (498)
T KOG4237|consen 141 -SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDL 213 (498)
T ss_pred -HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccc-----ccccchhhhHH
Confidence 5555555555555444555555555555555555544 2332 44445555555554444211 01111111000
Q ss_pred ccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCC-CcceeEEEecccccCcccc-hhccCCCCCCEEEcc
Q 047139 312 LSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIP-PFKLRYLVIRYYQLGPKFP-TWLRNQTELTTLVLN 389 (611)
Q Consensus 312 L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~ 389 (611)
. .+ + ..+++........+.+.+..... ...+.. ...+..--.+.+...+..| ..|+.+++|++|+++
T Consensus 214 a-~~------~-ietsgarc~~p~rl~~~Ri~q~~---a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls 282 (498)
T KOG4237|consen 214 A-MN------P-IETSGARCVSPYRLYYKRINQED---ARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS 282 (498)
T ss_pred h-hc------h-hhcccceecchHHHHHHHhcccc---hhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence 0 00 0 01122221111111111010000 000000 0011111112222233333 346777788888888
Q ss_pred CcccccccchhHHhcCCCCCEEEccCcccccccCcccccC-CCceEEccCCcccccCCCCCCCcceeecCcccCCCCeee
Q 047139 390 SASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFR-FPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSIN 468 (611)
Q Consensus 390 ~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~-~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~ 468 (611)
+|++++.-+.+|.+. ..++.|.|..|++...-...+... .++.|++.+|+++...|..+..+..+ .+|++-.|.+.
T Consensus 283 nN~i~~i~~~aFe~~-a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l--~~l~l~~Np~~ 359 (498)
T KOG4237|consen 283 NNKITRIEDGAFEGA-AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL--STLNLLSNPFN 359 (498)
T ss_pred CCccchhhhhhhcch-hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee--eeeehccCccc
Confidence 888877777776664 577777777777763322223222 56666666666666666555555444 44444544332
Q ss_pred cc-----cccch-----------hccCCCCeEECcCCCCCCCCCCcccccCcccccC---------cCCCCE-EECcCCc
Q 047139 469 GS-----IPQSV-----------GNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGS---------LLTIRF-LVLSNNH 522 (611)
Q Consensus 469 ~~-----~~~~l-----------~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~---------l~~L~~-L~Ls~n~ 522 (611)
-- +-+|+ .+...++.+.+++..+.+ |+...|+..+. ++-+.+ .-.|+..
T Consensus 360 CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~-----~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~ 434 (498)
T KOG4237|consen 360 CNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGD-----FRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKL 434 (498)
T ss_pred CccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccc-----cccCCccccCCCCCCCCCCCcchhhhhHhhcccc
Confidence 10 00011 111234444444443332 22222222211 111211 1222222
Q ss_pred ccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCC
Q 047139 523 LSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHN 594 (611)
Q Consensus 523 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n 594 (611)
+. .+|..+- ..-..|++.+|.++ .+|... +.+| .+|+++|+++-.--..|.+++.|.+|-+|+|
T Consensus 435 lk-~lp~~iP--~d~telyl~gn~~~-~vp~~~---~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 435 LK-LLPRGIP--VDVTELYLDGNAIT-SVPDEL---LRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hh-hcCCCCC--chhHHHhcccchhc-ccCHHH---Hhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 22 3332221 22356777777777 677662 4556 6777777777444456667777777777665
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=6.7e-19 Score=192.41 Aligned_cols=247 Identities=27% Similarity=0.434 Sum_probs=125.8
Q ss_pred CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEcc
Q 047139 234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS 313 (611)
Q Consensus 234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 313 (611)
+...|++++++++ .+|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|+++ .+|..+. ++|+.|+|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 4556666666665 4454442 35666667666666 4455443 46666666666665 3444332 356666666
Q ss_pred CCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCccc
Q 047139 314 DNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASI 393 (611)
Q Consensus 314 ~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l 393 (611)
+|.+.. +|.. +. ++|+.|++++ |.+. .+|..+. ++|+.|++++|++
T Consensus 250 ~N~L~~-LP~~-l~--s~L~~L~Ls~---------------------------N~L~-~LP~~l~--~sL~~L~Ls~N~L 295 (754)
T PRK15370 250 INRITE-LPER-LP--SALQSLDLFH---------------------------NKIS-CLPENLP--EELRYLSVYDNSI 295 (754)
T ss_pred CCccCc-CChh-Hh--CCCCEEECcC---------------------------CccC-ccccccC--CCCcEEECCCCcc
Confidence 666542 3331 11 2333333333 2222 1222221 3455666666655
Q ss_pred ccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeeccccc
Q 047139 394 SDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQ 473 (611)
Q Consensus 394 ~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~ 473 (611)
++ +|..+. ++|+.|++++|+++. +|... ..+ |++|++++|.+++ +|.
T Consensus 296 t~-LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l----------------------~~s-----L~~L~Ls~N~Lt~-LP~ 342 (754)
T PRK15370 296 RT-LPAHLP---SGITHLNVQSNSLTA-LPETL----------------------PPG-----LKTLEAGENALTS-LPA 342 (754)
T ss_pred cc-Ccccch---hhHHHHHhcCCcccc-CCccc----------------------ccc-----ceeccccCCcccc-CCh
Confidence 52 333221 244555555555442 22211 112 2334446666653 444
Q ss_pred chhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChh
Q 047139 474 SVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPA 553 (611)
Q Consensus 474 ~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 553 (611)
.+. ++|+.|++++|+++ .+|..+. ++|++|++++|+++ .+|..+. ..|+.|++++|+++ .+|.
T Consensus 343 ~l~--~sL~~L~Ls~N~L~---------~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~ 405 (754)
T PRK15370 343 SLP--PELQVLDVSKNQIT---------VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPE 405 (754)
T ss_pred hhc--CcccEEECCCCCCC---------cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCch
Confidence 432 56777777766655 2333221 36777777777776 4554443 35667777777766 4554
Q ss_pred HHhh---cCCCCcEEECcCCcCc
Q 047139 554 WIGE---SMPSLSILRLRSNHFN 573 (611)
Q Consensus 554 ~l~~---~l~~L~~L~ls~n~l~ 573 (611)
.+.. .++.+..|++.+|+++
T Consensus 406 sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 406 SLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hHHHHhhcCCCccEEEeeCCCcc
Confidence 3321 2466677777777766
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=9e-18 Score=183.62 Aligned_cols=266 Identities=22% Similarity=0.330 Sum_probs=158.9
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCC---CCCCC-CCCCCCCccc----------------EEecCCCCcEEEEeCCCCCCCC
Q 047139 37 SGCKEVEREALLQFKQNLTDPSG---RLSSW-VGEDCCSWRG----------------VGCNNRTGSIIMLNLNNPFRDS 96 (611)
Q Consensus 37 ~~~~~~~~~~ll~~k~~~~~~~~---~~~~W-~~~~~c~w~g----------------v~c~~~~~~v~~l~l~~~~~~~ 96 (611)
++..++|.+.+++..+.+..|.. .-+.| .++++|.-+. |.|. .+.|+.+..-+.....
T Consensus 58 ~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~~~g~~~~~ 135 (754)
T PRK15370 58 ETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTRVTESEQAS 135 (754)
T ss_pred CCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecC--CCcccccccccccccc
Confidence 45578999999999999987752 22349 6678997555 5564 3566666655521111
Q ss_pred CC-cccc-----cccccceeeeC--------ccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEcc
Q 047139 97 FD-SYED-----DAVHELRGKIS--------PSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLS 162 (611)
Q Consensus 97 ~~-~~~~-----~~~~~l~~~~~--------~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 162 (611)
.. ...+ .........-+ ..+..+. +-..++.+.|+++++.++ .+|..+. ++|+.|+++
T Consensus 136 ~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~-----~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls 207 (754)
T PRK15370 136 SASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMR-----DCLKNNKTELRLKILGLT-TIPACIP--EQITTLILD 207 (754)
T ss_pred cCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHH-----hhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEec
Confidence 00 0000 00000000000 0010000 001112335555555555 3555443 578889999
Q ss_pred CCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccC
Q 047139 163 SNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGY 242 (611)
Q Consensus 163 ~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~ 242 (611)
+|+++ .+|..+. .+|++|++++|.+ + .+|..+. .+|+.|++++|.+. .+|..+. . +|+.|++++
T Consensus 208 ~N~Lt-sLP~~l~--~nL~~L~Ls~N~L-t-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s------~L~~L~Ls~ 271 (754)
T PRK15370 208 NNELK-SLPENLQ--GNIKTLYANSNQL-T-SIPATLP--DTIQEMELSINRIT-ELPERLP--S------ALQSLDLFH 271 (754)
T ss_pred CCCCC-cCChhhc--cCCCEEECCCCcc-c-cCChhhh--ccccEEECcCCccC-cCChhHh--C------CCCEEECcC
Confidence 99888 5666554 5888999988884 3 4665543 47888888888887 4454442 2 788888888
Q ss_pred CCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccC
Q 047139 243 NQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFIT 322 (611)
Q Consensus 243 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 322 (611)
|+++ .+|..+. ++|++|++++|+++ .+|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|.+++ +|
T Consensus 272 N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP 341 (754)
T PRK15370 272 NKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LP 341 (754)
T ss_pred CccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CC
Confidence 8887 5666554 47888888888887 4565443 467888888888873 554432 578888888887765 44
Q ss_pred hhhhcCCCCCCEEEcCccC
Q 047139 323 DAHLRNLTSLEELSLIKTS 341 (611)
Q Consensus 323 ~~~l~~l~~L~~L~l~~~~ 341 (611)
. .+ .++|+.|++++|.
T Consensus 342 ~-~l--~~sL~~L~Ls~N~ 357 (754)
T PRK15370 342 A-SL--PPELQVLDVSKNQ 357 (754)
T ss_pred h-hh--cCcccEEECCCCC
Confidence 3 22 2466666666643
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=2.7e-19 Score=181.65 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=17.2
Q ss_pred CCCCEEECcCCcccc----cCcccccCCCCCCEEECCCCcCc
Q 047139 511 LTIRFLVLSNNHLSG----EIPPSLKNCSLMDSLDLGENQLS 548 (611)
Q Consensus 511 ~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~ 548 (611)
+.|++|++++|.++. .+...+..+++|+++++++|.++
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 345555555554441 12233334444555555555544
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=1.1e-18 Score=177.02 Aligned_cols=202 Identities=28% Similarity=0.289 Sum_probs=117.0
Q ss_pred EEccCCcCc-cCCCccccCCCCCCEEEccCCCCCC----CCCccCCCCCCCCEEEccCCCCCc------ccccccCCCCC
Q 047139 135 LDLSNNGFN-STLPHWLFNITNLLSLDLSSNDLQG----DIPDGFSSLNSLQLLDLSGNSFLE------GQLSRNLGTLC 203 (611)
Q Consensus 135 L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~~~~----~~p~~l~~l~~L~~L~Ls~n~~~~------~~~~~~l~~l~ 203 (611)
|+|+.+.++ +..+..+..+.+|+.|+++++.++. .++..+...+++++++++++.+ . ..++..+.+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~-~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET-GRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccccc-CCcchHHHHHHHHHHhcC
Confidence 344444444 2344455666667777777777642 2444556666777777777663 2 12334556677
Q ss_pred CCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCc----cCCcccCCC-CCCcEEEccCCccccc----CC
Q 047139 204 NLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTG----NLPISLGYL-KNLRYLELWYNSFLGS----IP 274 (611)
Q Consensus 204 ~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~----~p 274 (611)
+|++|++++|.+.+..+..+..+... ++|++|++++|.+++ .+...+..+ ++|+.|++++|.+++. ++
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~---~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRS---SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhcc---CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 77777777777766555555554411 247777777777662 222334455 6777777777776632 23
Q ss_pred CCccCcccCceEEecCCccccC----CCcCCCCCCCCCEEEccCCccccccCh---hhhcCCCCCCEEEcCcc
Q 047139 275 PSLGNLTFLEELYLTSNQMNGK----FPESFGQLSAIRVLELSDNQWEGFITD---AHLRNLTSLEELSLIKT 340 (611)
Q Consensus 275 ~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~l~~~ 340 (611)
..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+.... ..+..+++|++|++++|
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 3445556677777777776632 223344456777777777766533211 13445566666666664
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=2.3e-19 Score=152.73 Aligned_cols=166 Identities=31% Similarity=0.528 Sum_probs=134.8
Q ss_pred ccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccc
Q 047139 116 LLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQL 195 (611)
Q Consensus 116 l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~ 195 (611)
+..+.+++.|.+|.|+++ .+|..+..+.+|+.|++++|++. .+|.+++.+++|++|+++-|++ ...
T Consensus 29 Lf~~s~ITrLtLSHNKl~-----------~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl--~~l 94 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-----------VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL--NIL 94 (264)
T ss_pred ccchhhhhhhhcccCcee-----------ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh--hcC
Confidence 455666666777766664 56778999999999999999998 7888899999999999998885 568
Q ss_pred cccCCCCCCCCEEEcccccCCC-ccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCC
Q 047139 196 SRNLGTLCNLQTLKLSLNQFSG-EVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIP 274 (611)
Q Consensus 196 ~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 274 (611)
|..|+.++.|+.||+.+|++.. ..|.-|..++ .|+.|++++|.+. .+|..++++++|+.|.+.+|.+. .+|
T Consensus 95 prgfgs~p~levldltynnl~e~~lpgnff~m~------tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lp 166 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNNLNENSLPGNFFYMT------TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLP 166 (264)
T ss_pred ccccCCCchhhhhhccccccccccCCcchhHHH------HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCc
Confidence 9999999999999999998764 3566666666 7888888888887 77888888888888888888877 678
Q ss_pred CCccCcccCceEEecCCccccCCCcCCCCC
Q 047139 275 PSLGNLTFLEELYLTSNQMNGKFPESFGQL 304 (611)
Q Consensus 275 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 304 (611)
..++.++.|++|.+.+|.++ .+|+.++++
T Consensus 167 keig~lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred HHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence 88888888888888888887 666666654
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=2.5e-18 Score=146.46 Aligned_cols=159 Identities=32% Similarity=0.547 Sum_probs=144.0
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCccc
Q 047139 150 LFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSEC 229 (611)
Q Consensus 150 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~ 229 (611)
+.++++.+.|.+++|+++ .+|..|..+.+|+.|++++|++ ..+|..++.+++|++|+++-|++. ..|..|+.++
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p-- 102 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP-- 102 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchh--hhcChhhhhchhhhheecchhhhh-cCccccCCCc--
Confidence 556788899999999999 7788899999999999999996 569999999999999999999986 6788899888
Q ss_pred CCCCCCcEEEccCCCCC-ccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCC
Q 047139 230 INSSSLARLELGYNQLT-GNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIR 308 (611)
Q Consensus 230 ~~~~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 308 (611)
.|+.||+.+|++. ..+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+. .+|..++.+++|+
T Consensus 103 ----~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lr 176 (264)
T KOG0617|consen 103 ----ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLR 176 (264)
T ss_pred ----hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHH
Confidence 9999999999986 467888999999999999999998 78889999999999999999987 6899999999999
Q ss_pred EEEccCCccccc
Q 047139 309 VLELSDNQWEGF 320 (611)
Q Consensus 309 ~L~L~~n~l~~~ 320 (611)
+|++.+|+++-.
T Consensus 177 elhiqgnrl~vl 188 (264)
T KOG0617|consen 177 ELHIQGNRLTVL 188 (264)
T ss_pred HHhcccceeeec
Confidence 999999998753
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.60 E-value=6.3e-15 Score=160.82 Aligned_cols=137 Identities=38% Similarity=0.605 Sum_probs=79.1
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC----CcccEEecCC--CC--cEEEEeCCCCCCCCCCcccccccccc
Q 047139 37 SGCKEVEREALLQFKQNLTDPSGRLSSWVGEDCC----SWRGVGCNNR--TG--SIIMLNLNNPFRDSFDSYEDDAVHEL 108 (611)
Q Consensus 37 ~~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~c----~w~gv~c~~~--~~--~v~~l~l~~~~~~~~~~~~~~~~~~l 108 (611)
..+.++|.+||+++|+++.+|.. .+|.+..|| .|.||.|... .+ +|+.|+|++ +++
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~--------------n~L 430 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN--------------QGL 430 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCC--------------CCc
Confidence 34567899999999999976642 479776663 7999999531 11 356666655 455
Q ss_pred eeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCC
Q 047139 109 RGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGN 188 (611)
Q Consensus 109 ~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n 188 (611)
.|.+|..+..+++|++|+|++|++ .|.+|..++.+++|+.|+|++|+++|.+|..++++++|++|++++|
T Consensus 431 ~g~ip~~i~~L~~L~~L~Ls~N~l----------~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 431 RGFIPNDISKLRHLQSINLSGNSI----------RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred cccCCHHHhCCCCCCEEECCCCcc----------cCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence 555555555555555444443322 3445555555555555555555555555555555555555555555
Q ss_pred CCCcccccccCC
Q 047139 189 SFLEGQLSRNLG 200 (611)
Q Consensus 189 ~~~~~~~~~~l~ 200 (611)
. +.|.+|..++
T Consensus 501 ~-l~g~iP~~l~ 511 (623)
T PLN03150 501 S-LSGRVPAALG 511 (623)
T ss_pred c-ccccCChHHh
Confidence 4 3444444443
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.25 E-value=2.2e-13 Score=137.12 Aligned_cols=136 Identities=32% Similarity=0.532 Sum_probs=100.2
Q ss_pred cCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcc
Q 047139 444 PIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHL 523 (611)
Q Consensus 444 ~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l 523 (611)
.+|..+.+++.| +.+||+.|+++ .+|..++.|+ |+.|-+++|+++ .+|+.++.+..|..||.+.|.+
T Consensus 112 ~ip~~i~~L~~l--t~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~---------~lp~~ig~~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 112 TIPEAICNLEAL--TFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT---------SLPEEIGLLPTLAHLDVSKNEI 178 (722)
T ss_pred ecchhhhhhhHH--HHhhhccchhh-cCChhhhcCc-ceeEEEecCccc---------cCCcccccchhHHHhhhhhhhh
Confidence 345455555555 55666777776 6677777775 777777777766 6777777777888888888887
Q ss_pred cccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCc
Q 047139 524 SGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLL 597 (611)
Q Consensus 524 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 597 (611)
- .+|..++++.+|+.|+++.|++. .+|..+.. ++ |..||+|+|+++ .||-.|.+++.|++|-|.+|++.
T Consensus 179 ~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 179 Q-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred h-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-Cc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 7 67777888888888888888877 67777662 43 777888888887 77888888888888888888775
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.15 E-value=6.8e-11 Score=129.37 Aligned_cols=94 Identities=34% Similarity=0.587 Sum_probs=44.0
Q ss_pred ccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccc
Q 047139 501 GEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSEL 580 (611)
Q Consensus 501 g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l 580 (611)
|.+|..++.+++|+.|+|++|.++|.+|..+..+++|+.|+|++|+++|.+|..+.. +++|+.|+|++|+++|.+|..+
T Consensus 432 g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~-L~~L~~L~Ls~N~l~g~iP~~l 510 (623)
T PLN03150 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNSLSGRVPAAL 510 (623)
T ss_pred ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhc-CCCCCEEECcCCcccccCChHH
Confidence 444444444444444444444444444444444444444444444444444444443 4444444444444444444444
Q ss_pred cCC-CCCCEeeccCCc
Q 047139 581 CKL-SALHILDLSHNN 595 (611)
Q Consensus 581 ~~l-~~L~~L~ls~n~ 595 (611)
... ..+..+++.+|+
T Consensus 511 ~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 511 GGRLLHRASFNFTDNA 526 (623)
T ss_pred hhccccCceEEecCCc
Confidence 332 233444444444
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.06 E-value=4.7e-12 Score=127.69 Aligned_cols=169 Identities=33% Similarity=0.511 Sum_probs=128.6
Q ss_pred EEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEccccc
Q 047139 135 LDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQ 214 (611)
Q Consensus 135 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~ 214 (611)
.||+.|++. .+|..++.+..|..+.+..|.+. .+|..+.++..|.++|++.|++ ..+|..++.|+ |+.|-+++|+
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql--S~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL--SHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh--hcCChhhhcCc-ceeEEEecCc
Confidence 344444443 67888888888888888888887 7788888888888888888885 45677776654 7888888888
Q ss_pred CCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccc
Q 047139 215 FSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMN 294 (611)
Q Consensus 215 l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 294 (611)
++ .+|+.++... +|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+++..+ .|..||++.|++.
T Consensus 155 l~-~lp~~ig~~~------tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 155 LT-SLPEEIGLLP------TLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred cc-cCCcccccch------hHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence 76 4455555555 7888888888887 67788888888888888888877 566667644 5778888888887
Q ss_pred cCCCcCCCCCCCCCEEEccCCcccc
Q 047139 295 GKFPESFGQLSAIRVLELSDNQWEG 319 (611)
Q Consensus 295 ~~~~~~l~~l~~L~~L~L~~n~l~~ 319 (611)
.+|..|.+|+.|++|-|.+|.+..
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCCC
Confidence 678888888888888888888765
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=2.7e-10 Score=119.13 Aligned_cols=178 Identities=35% Similarity=0.545 Sum_probs=120.5
Q ss_pred CCCEEEccCcccccccCcccccC--CCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeE
Q 047139 407 TLDELDVGGNHLSGRIPNTLVFR--FPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTL 484 (611)
Q Consensus 407 ~L~~L~ls~n~l~~~~~~~~~~~--~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L 484 (611)
.+..+++.+|.++ .++...... .++.+++++|++... |..+..+..| +.|++++|+++ .+|...+..+.|+.|
T Consensus 117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L--~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNL--KNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred ceeEEecCCcccc-cCccccccchhhcccccccccchhhh-hhhhhccccc--cccccCCchhh-hhhhhhhhhhhhhhe
Confidence 4555555555555 333333332 456666666655532 2223333333 55666888887 566655578888889
Q ss_pred ECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcE
Q 047139 485 VISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSI 564 (611)
Q Consensus 485 ~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~ 564 (611)
++++|++. .+|..+.....|+++++++|.+. ..+..+.++.++..+.+.+|++. .++..+.. +++++.
T Consensus 192 ~ls~N~i~---------~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~-l~~l~~ 259 (394)
T COG4886 192 DLSGNKIS---------DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGN-LSNLET 259 (394)
T ss_pred eccCCccc---------cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcc-ccccce
Confidence 88888887 45555444566888999988654 56667888888888888888877 34555654 788999
Q ss_pred EECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCcc
Q 047139 565 LRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYC 603 (611)
Q Consensus 565 L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~ 603 (611)
|++++|.++ .++. ++.+.+++.|++++|.++...|..
T Consensus 260 L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 260 LDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence 999999888 4554 788888999999998888766653
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=4.9e-11 Score=111.20 Aligned_cols=129 Identities=28% Similarity=0.346 Sum_probs=102.8
Q ss_pred cCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCC
Q 047139 457 LRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSL 536 (611)
Q Consensus 457 l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 536 (611)
|+++||++|.++ .+.++..-.|+++.|++++|.|..+. .+..+++|+.||||+|.++ .+...=.++-+
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~----------nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN 353 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ----------NLAELPQLQLLDLSGNLLA-ECVGWHLKLGN 353 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEeccccceeeeh----------hhhhcccceEeecccchhH-hhhhhHhhhcC
Confidence 477777999997 67777788899999999999987443 2445889999999999988 44555567888
Q ss_pred CCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCccc-CCccccCCCCCCEeeccCCcCccCC
Q 047139 537 MDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGT-IPSELCKLSALHILDLSHNNLLGPI 600 (611)
Q Consensus 537 L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~-~p~~l~~l~~L~~L~ls~n~l~g~i 600 (611)
++.|.|++|.|.. ...+.+ +-+|..||+++|+|... --..+++++.|+.+.+.+|++++.+
T Consensus 354 IKtL~La~N~iE~--LSGL~K-LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 354 IKTLKLAQNKIET--LSGLRK-LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred EeeeehhhhhHhh--hhhhHh-hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 9999999998862 345665 88999999999998742 2346889999999999999998643
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.03 E-value=2.3e-10 Score=119.67 Aligned_cols=174 Identities=40% Similarity=0.574 Sum_probs=91.7
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccCCCCC-CCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcc
Q 047139 150 LFNITNLLSLDLSSNDLQGDIPDGFSSLN-SLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSE 228 (611)
Q Consensus 150 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~-~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 228 (611)
+..++.++.|++.+|.++ .+|....... +|+.|++++|.+ ..+|..++.+++|+.|++++|+++...+ .....+
T Consensus 112 ~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i--~~l~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~~~- 186 (394)
T COG4886 112 LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI--ESLPSPLRNLPNLKNLDLSFNDLSDLPK-LLSNLS- 186 (394)
T ss_pred hhcccceeEEecCCcccc-cCccccccchhhcccccccccch--hhhhhhhhccccccccccCCchhhhhhh-hhhhhh-
Confidence 333455566666666655 4444455553 566666666653 2344455566666666666665553222 111222
Q ss_pred cCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCC
Q 047139 229 CINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIR 308 (611)
Q Consensus 229 ~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 308 (611)
.|+.|++++|++. .+|..+.....|+++.+++|++. ..+..+.++.++..+.+.+|++. ..+..++.++.++
T Consensus 187 -----~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~ 258 (394)
T COG4886 187 -----NLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLE 258 (394)
T ss_pred -----hhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccc
Confidence 5666666666665 44444444445666666666432 33444555555555555555554 2244455555566
Q ss_pred EEEccCCccccccChhhhcCCCCCCEEEcCc
Q 047139 309 VLELSDNQWEGFITDAHLRNLTSLEELSLIK 339 (611)
Q Consensus 309 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~ 339 (611)
.|++++|.+... +. +..+.+++.|++++
T Consensus 259 ~L~~s~n~i~~i-~~--~~~~~~l~~L~~s~ 286 (394)
T COG4886 259 TLDLSNNQISSI-SS--LGSLTNLRELDLSG 286 (394)
T ss_pred eecccccccccc-cc--ccccCccCEEeccC
Confidence 666666655432 21 55556666666655
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.02 E-value=4.6e-11 Score=114.06 Aligned_cols=192 Identities=21% Similarity=0.251 Sum_probs=91.2
Q ss_pred CCcceeEEEecccccCcccch----hccCCCCCCEEEccCcccccccchhHHhc------------CCCCCEEEccCccc
Q 047139 355 PPFKLRYLVIRYYQLGPKFPT----WLRNQTELTTLVLNSASISDTLPSWFLQL------------NLTLDELDVGGNHL 418 (611)
Q Consensus 355 ~~~~L~~L~l~~~~l~~~~~~----~l~~~~~L~~L~l~~n~l~~~~p~~~~~~------------~~~L~~L~ls~n~l 418 (611)
.+++|++++|+.|-++...+. .+.++..|++|.+.+|.+.......+... .+.|+.+....|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 345777777777777765544 34667888888888887764333332221 23344444444443
Q ss_pred ccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeec----ccccchhccCCCCeEECcCCCCCCC
Q 047139 419 SGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSING----SIPQSVGNLKQLLTLVISNNNLSDM 494 (611)
Q Consensus 419 ~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~i~~l 494 (611)
-......+... -...+.+ +.+.+..|.+.. .+...|..+++|+.|||.+|-++.-
T Consensus 170 en~ga~~~A~~----------------~~~~~~l-----eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 170 ENGGATALAEA----------------FQSHPTL-----EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred ccccHHHHHHH----------------HHhcccc-----ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH
Confidence 21111000000 0000111 222224443321 2233455666666666666655422
Q ss_pred CCCcccccCcccccCcCCCCEEECcCCcccccCcccc-----cCCCCCCEEECCCCcCccc----ChhHHhhcCCCCcEE
Q 047139 495 TNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSL-----KNCSLMDSLDLGENQLSGN----IPAWIGESMPSLSIL 565 (611)
Q Consensus 495 ~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~----ip~~l~~~l~~L~~L 565 (611)
..-. +...++.++.|++|++++|.+.......+ ...++|++|.+.+|.|+.. +-..+.. .+.|+.|
T Consensus 229 gs~~----LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kL 303 (382)
T KOG1909|consen 229 GSVA----LAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKL 303 (382)
T ss_pred HHHH----HHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHh
Confidence 2111 22233335566666666666653322221 2345666666666665521 1122232 4566666
Q ss_pred ECcCCcC
Q 047139 566 RLRSNHF 572 (611)
Q Consensus 566 ~ls~n~l 572 (611)
+|++|++
T Consensus 304 nLngN~l 310 (382)
T KOG1909|consen 304 NLNGNRL 310 (382)
T ss_pred cCCcccc
Confidence 6666666
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=6.4e-10 Score=99.76 Aligned_cols=119 Identities=31% Similarity=0.457 Sum_probs=35.0
Q ss_pred CcccCCCCeeecccccchh-ccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccc-cCCC
Q 047139 458 RDLDISFNSINGSIPQSVG-NLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSL-KNCS 535 (611)
Q Consensus 458 ~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~ 535 (611)
++|+|++|.|+. + +.++ .+.+|+.|++++|.|+++.+ +..++.|++|++++|+|+. +++.+ ..++
T Consensus 22 ~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~~----------l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp 88 (175)
T PF14580_consen 22 RELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLEG----------LPGLPRLKTLDLSNNRISS-ISEGLDKNLP 88 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--TT--------------TT--EEE--SS---S--CHHHHHH-T
T ss_pred cccccccccccc-c-cchhhhhcCCCEEECCCCCCccccC----------ccChhhhhhcccCCCCCCc-cccchHHhCC
Confidence 555556666653 2 2343 35566666666666664331 2225666666666666663 33233 3466
Q ss_pred CCCEEECCCCcCcccCh-hHHhhcCCCCcEEECcCCcCcccCCc----cccCCCCCCEeec
Q 047139 536 LMDSLDLGENQLSGNIP-AWIGESMPSLSILRLRSNHFNGTIPS----ELCKLSALHILDL 591 (611)
Q Consensus 536 ~L~~L~Ls~N~l~~~ip-~~l~~~l~~L~~L~ls~n~l~~~~p~----~l~~l~~L~~L~l 591 (611)
+|+.|++++|+|...-. ..+.. +++|++|++.+|+++.. +. -+..+++|+.||-
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~-l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSS-LPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG--TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred cCCEEECcCCcCCChHHhHHHHc-CCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 66666666666653111 22332 66666666666666632 21 2344566666653
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.1e-10 Score=114.65 Aligned_cols=183 Identities=25% Similarity=0.229 Sum_probs=77.3
Q ss_pred ccCCCCCCEEEccCCCCCCC--CCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccc-hhhhcC
Q 047139 150 LFNITNLLSLDLSSNDLQGD--IPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVS-DFIDGL 226 (611)
Q Consensus 150 l~~l~~L~~L~L~~n~~~~~--~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l 226 (611)
...|++++.|||+.|-+..- +-.....+++|+.|+++.|++....-...-..+++|+.|.++.|.++.... ..+..+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 44455555555555544321 112234455555555555553211111111234455555555555542211 111222
Q ss_pred cccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCC--CCccCcccCceEEecCCccccC-CCcC---
Q 047139 227 SECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIP--PSLGNLTFLEELYLTSNQMNGK-FPES--- 300 (611)
Q Consensus 227 ~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~-~~~~--- 300 (611)
+ +|+.|++.+|............+..|+.|||++|.+-. .+ ...+.++.|+.|+++.+.+... .|+.
T Consensus 222 P------sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~ 294 (505)
T KOG3207|consen 222 P------SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESL 294 (505)
T ss_pred C------cHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccch
Confidence 2 55555555553221222222334455555555555442 12 2244555555555555554431 1221
Q ss_pred --CCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCc
Q 047139 301 --FGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIK 339 (611)
Q Consensus 301 --l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~ 339 (611)
....++|++|++..|++...-.-..+..+++|+.|.+..
T Consensus 295 ~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 295 DKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred hhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 123455555555555553322222333334444444333
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=6.2e-10 Score=99.86 Aligned_cols=109 Identities=28% Similarity=0.426 Sum_probs=30.3
Q ss_pred hccCCCCeEECcCCCCCCCCCCcccccCccccc-CcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhH
Q 047139 476 GNLKQLLTLVISNNNLSDMTNNNFSGEIPESIG-SLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAW 554 (611)
Q Consensus 476 ~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 554 (611)
.++.++++|+|++|.|+.+. .++ .+.+|+.||+++|.|+. ++ .+..++.|+.|++++|+|+ .++..
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie----------~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~ 82 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE----------NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEG 82 (175)
T ss_dssp ------------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHH
T ss_pred cccccccccccccccccccc----------chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccc
Confidence 34445666666666665332 111 24566666666666663 22 4556666666666666666 34444
Q ss_pred HhhcCCCCcEEECcCCcCcccC-CccccCCCCCCEeeccCCcCc
Q 047139 555 IGESMPSLSILRLRSNHFNGTI-PSELCKLSALHILDLSHNNLL 597 (611)
Q Consensus 555 l~~~l~~L~~L~ls~n~l~~~~-p~~l~~l~~L~~L~ls~n~l~ 597 (611)
+...+++|++|++++|+|...- -..+..+++|++|++.+|+++
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 4333666666666666665321 134445666666666666665
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.90 E-value=9.8e-11 Score=111.86 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=52.2
Q ss_pred CCCCCEEEccCCcccccc---ChhhhcCCCCCCEEEcCccCCCCcee-eccCCCCCCcceeEEEecccccCc----ccch
Q 047139 304 LSAIRVLELSDNQWEGFI---TDAHLRNLTSLEELSLIKTSNSSLSF-NISFDWIPPFKLRYLVIRYYQLGP----KFPT 375 (611)
Q Consensus 304 l~~L~~L~L~~n~l~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~----~~~~ 375 (611)
-++|+++...+|.+...- ....++..+.|+.+.++.|.+..-.. .....+..+++|+.|+++.|.++. .+..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 345555555555543211 11234444555555555533311111 011122334444444444444432 2333
Q ss_pred hccCCCCCCEEEccCcccccccchh----HHhcCCCCCEEEccCcccc
Q 047139 376 WLRNQTELTTLVLNSASISDTLPSW----FLQLNLTLDELDVGGNHLS 419 (611)
Q Consensus 376 ~l~~~~~L~~L~l~~n~l~~~~p~~----~~~~~~~L~~L~ls~n~l~ 419 (611)
.++.+++|+.|+++.|.+....... +....|.|+.+.+.+|.++
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 4455566666666666665443332 2223456666666666655
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=7.6e-10 Score=108.74 Aligned_cols=184 Identities=22% Similarity=0.245 Sum_probs=88.1
Q ss_pred hccCCCCCCEEEccCcccccccc-hhHHhcCCCCCEEEccCcccccccCccccc--CCCceEEccCCccccc----CCCC
Q 047139 376 WLRNQTELTTLVLNSASISDTLP-SWFLQLNLTLDELDVGGNHLSGRIPNTLVF--RFPGSVDLSSNRFEGP----IPLW 448 (611)
Q Consensus 376 ~l~~~~~L~~L~l~~n~l~~~~p-~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~--~~l~~l~ls~n~~~~~----~p~~ 448 (611)
....|++++.|+++.|-+....| ..+...+|+|+.|+++.|++.-........ ..++.|.++.|.++-. +...
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 34455666666666665543322 233444566666666666655322222211 1344455555544311 1111
Q ss_pred CCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccccc-C
Q 047139 449 SSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE-I 527 (611)
Q Consensus 449 ~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~-~ 527 (611)
++++.. |+|..|...+.......-+..|++|||++|++.+...- ..++.++.|+.|+++.|.+... +
T Consensus 221 fPsl~~-----L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~-------~~~~~l~~L~~Lnls~tgi~si~~ 288 (505)
T KOG3207|consen 221 FPSLEV-----LYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG-------YKVGTLPGLNQLNLSSTGIASIAE 288 (505)
T ss_pred CCcHHH-----hhhhcccccceecchhhhhhHHhhccccCCcccccccc-------cccccccchhhhhccccCcchhcC
Confidence 233333 33355542222222333455566666666665533211 1233455666666666666532 2
Q ss_pred ccc-----ccCCCCCCEEECCCCcCcccCh--hHHhhcCCCCcEEECcCCcCc
Q 047139 528 PPS-----LKNCSLMDSLDLGENQLSGNIP--AWIGESMPSLSILRLRSNHFN 573 (611)
Q Consensus 528 p~~-----l~~l~~L~~L~Ls~N~l~~~ip--~~l~~~l~~L~~L~ls~n~l~ 573 (611)
|++ ...+++|++|++..|+|. .++ ..+.. +++|+.|.+..|.++
T Consensus 289 ~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~-l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 289 PDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRT-LENLKHLRITLNYLN 339 (505)
T ss_pred CCccchhhhcccccceeeecccCccc-cccccchhhc-cchhhhhhccccccc
Confidence 333 345566667777776664 222 22332 556666666666665
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.86 E-value=3.8e-10 Score=105.35 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=7.9
Q ss_pred cccCCCCCCEEECCCC
Q 047139 115 SLLQLKDLEYLDLSLN 130 (611)
Q Consensus 115 ~l~~l~~L~~L~ls~n 130 (611)
.+.-+++|..+.+|.+
T Consensus 209 ~l~~f~~l~~~~~s~~ 224 (490)
T KOG1259|consen 209 NLNAFRNLKTLKFSAL 224 (490)
T ss_pred chHHhhhhheeeeecc
Confidence 3444555555555544
No 37
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.80 E-value=7.7e-09 Score=69.61 Aligned_cols=38 Identities=58% Similarity=1.120 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCC-CCCCCCCCCC-C--CCCCCcccEEec
Q 047139 41 EVEREALLQFKQNLT-DPSGRLSSWV-G--EDCCSWRGVGCN 78 (611)
Q Consensus 41 ~~~~~~ll~~k~~~~-~~~~~~~~W~-~--~~~c~w~gv~c~ 78 (611)
++|++||++||+++. +|.+.+.+|. . .+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 689999999999998 5778999993 3 799999999995
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=4.3e-09 Score=77.49 Aligned_cols=59 Identities=37% Similarity=0.576 Sum_probs=27.2
Q ss_pred CCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCc
Q 047139 536 LMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNN 595 (611)
Q Consensus 536 ~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~ 595 (611)
+|++|++++|+++ .+|...+..+++|++|++++|+++...|..|.++++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3444444444444 3333333334445555555444444444444445555555555444
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.70 E-value=8.6e-09 Score=115.45 Aligned_cols=105 Identities=33% Similarity=0.427 Sum_probs=54.9
Q ss_pred CCCEEEccccc--CCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcc
Q 047139 204 NLQTLKLSLNQ--FSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLT 281 (611)
Q Consensus 204 ~L~~L~l~~n~--l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 281 (611)
+|++|-+..|. +.....+.|..++ .|+.||+++|.--+.+|..++.+-+|++|++++..+. .+|..+++++
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~------~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk 618 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLP------LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLK 618 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCc------ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHH
Confidence 45555444443 2323333344444 5555555555444455555555556666666655555 5555555566
Q ss_pred cCceEEecCCccccCCCcCCCCCCCCCEEEccCC
Q 047139 282 FLEELYLTSNQMNGKFPESFGQLSAIRVLELSDN 315 (611)
Q Consensus 282 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 315 (611)
+|.+|++..+.-...+|.....+++|++|.+...
T Consensus 619 ~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred hhheeccccccccccccchhhhcccccEEEeecc
Confidence 6666665555443334444444556666555543
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.66 E-value=7.3e-09 Score=116.01 Aligned_cols=85 Identities=29% Similarity=0.368 Sum_probs=42.8
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCccc
Q 047139 150 LFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSEC 229 (611)
Q Consensus 150 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~ 229 (611)
|..++.|++||+++|.=-+.+|+.|+++-+||+|+++++.+ ..+|..+++++.|.+|++..+.....+|.....+.
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I--~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~-- 642 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI--SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ-- 642 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc--cccchHHHHHHhhheeccccccccccccchhhhcc--
Confidence 44455555555555444445555555555555555555553 24555555555555555555543333344444344
Q ss_pred CCCCCCcEEEccC
Q 047139 230 INSSSLARLELGY 242 (611)
Q Consensus 230 ~~~~~L~~L~Ls~ 242 (611)
+|++|.+..
T Consensus 643 ----~Lr~L~l~~ 651 (889)
T KOG4658|consen 643 ----SLRVLRLPR 651 (889)
T ss_pred ----cccEEEeec
Confidence 555555443
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.64 E-value=3.2e-08 Score=72.85 Aligned_cols=59 Identities=36% Similarity=0.416 Sum_probs=30.7
Q ss_pred CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCc
Q 047139 234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQ 292 (611)
Q Consensus 234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 292 (611)
+|++|++++|+++...+..|..+++|++|++++|.+....|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554434455555555555555555554444455555555555555554
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.55 E-value=1.4e-08 Score=106.48 Aligned_cols=63 Identities=38% Similarity=0.436 Sum_probs=28.6
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCC
Q 047139 150 LFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSG 217 (611)
Q Consensus 150 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 217 (611)
+..+++|++|++++|.|+... .+..++.|+.|++++|.+ . -...+..++.|+.+++++|.+..
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i-~--~~~~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLI-S--DISGLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred hhhhhcchheecccccccccc--chhhccchhhheeccCcc-h--hccCCccchhhhcccCCcchhhh
Confidence 444555555555555554221 234444455555555552 1 12233334455555555555443
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.38 E-value=9.5e-09 Score=106.96 Aligned_cols=132 Identities=25% Similarity=0.174 Sum_probs=80.4
Q ss_pred cccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcc
Q 047139 426 LVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPE 505 (611)
Q Consensus 426 ~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~ 505 (611)
+.+..+...+.+.|.++-. ...+.-+. .++.|+|++|+++... .+..|++|+.|||++|.+..++ .
T Consensus 161 ~~Wn~L~~a~fsyN~L~~m-D~SLqll~--ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp---------~ 226 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLVLM-DESLQLLP--ALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVP---------Q 226 (1096)
T ss_pred hhhhhHhhhhcchhhHHhH-HHHHHHHH--HhhhhccchhhhhhhH--HHHhcccccccccccchhcccc---------c
Confidence 3333455555666655421 11111111 1355666888887543 6778888888888888877433 2
Q ss_pred cccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCc
Q 047139 506 SIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFN 573 (611)
Q Consensus 506 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~ 573 (611)
.-..-..|+.|.+++|.++.. ..+.++.+|+.||+++|-|.+.---.....+..|+.|+|.+|++.
T Consensus 227 l~~~gc~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 227 LSMVGCKLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cchhhhhheeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 111112488888888887732 356788888888888887765322111112667888888888876
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.37 E-value=6.5e-08 Score=101.39 Aligned_cols=82 Identities=28% Similarity=0.296 Sum_probs=48.0
Q ss_pred CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEcc
Q 047139 234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS 313 (611)
Q Consensus 234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 313 (611)
.++.+++..|.+.. +-..+..+++|+.+++.+|.+... ...+..+++|++|++++|.++... .+..++.|+.|+++
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheec
Confidence 56666677776662 333355666677777777766633 222555666666666666665332 24455556666666
Q ss_pred CCcccc
Q 047139 314 DNQWEG 319 (611)
Q Consensus 314 ~n~l~~ 319 (611)
+|.+..
T Consensus 149 ~N~i~~ 154 (414)
T KOG0531|consen 149 GNLISD 154 (414)
T ss_pred cCcchh
Confidence 666543
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=8.3e-09 Score=96.56 Aligned_cols=153 Identities=19% Similarity=0.139 Sum_probs=65.7
Q ss_pred CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCc-cccc-CCCCccCcccCceEEecCCccccCCCcC-CCC-CCCCCE
Q 047139 234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNS-FLGS-IPPSLGNLTFLEELYLTSNQMNGKFPES-FGQ-LSAIRV 309 (611)
Q Consensus 234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~-l~~L~~ 309 (611)
+|+.|.+.++.+.+.+...+++-.+|+.++++.+. ++.. ..-.+..++.|.+|++++|.+....-.. +.+ -++|+.
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~ 290 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQ 290 (419)
T ss_pred hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhh
Confidence 44445555555544444444444555555554442 1100 0001234455555555555443221110 111 134555
Q ss_pred EEccCCc---cccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccch---hccCCCCC
Q 047139 310 LELSDNQ---WEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPT---WLRNQTEL 383 (611)
Q Consensus 310 L~L~~n~---l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~---~l~~~~~L 383 (611)
|+|+++. ....+ ......+++|.+||+++ +..+.......+..++.|++|.++.|-. ..|. .+...+.|
T Consensus 291 LNlsG~rrnl~~sh~-~tL~~rcp~l~~LDLSD--~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl 365 (419)
T KOG2120|consen 291 LNLSGYRRNLQKSHL-STLVRRCPNLVHLDLSD--SVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSL 365 (419)
T ss_pred hhhhhhHhhhhhhHH-HHHHHhCCceeeecccc--ccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcce
Confidence 5555432 11111 11234455555555555 2233333333444455555555555531 2232 24556777
Q ss_pred CEEEccCc
Q 047139 384 TTLVLNSA 391 (611)
Q Consensus 384 ~~L~l~~n 391 (611)
.+|++.++
T Consensus 366 ~yLdv~g~ 373 (419)
T KOG2120|consen 366 VYLDVFGC 373 (419)
T ss_pred EEEEeccc
Confidence 77777665
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.32 E-value=6.2e-08 Score=80.40 Aligned_cols=136 Identities=24% Similarity=0.265 Sum_probs=101.2
Q ss_pred CcccCCCCeeecccccchh---ccCCCCeEECcCCCCCCCCCCcccccCcccccC-cCCCCEEECcCCcccccCcccccC
Q 047139 458 RDLDISFNSINGSIPQSVG---NLKQLLTLVISNNNLSDMTNNNFSGEIPESIGS-LLTIRFLVLSNNHLSGEIPPSLKN 533 (611)
Q Consensus 458 ~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~-l~~L~~L~Ls~n~l~~~~p~~l~~ 533 (611)
..++|+.|.+- .+++... ....|+..+|++|.+. .+|+.+.. .+.++.|++++|.++ .+|..+..
T Consensus 30 h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk---------~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa 98 (177)
T KOG4579|consen 30 HFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK---------KFPKKFTIKFPTATTLNLANNEIS-DVPEELAA 98 (177)
T ss_pred hhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh---------hCCHHHhhccchhhhhhcchhhhh-hchHHHhh
Confidence 44666777764 4555443 3455667788888776 45555443 347899999999998 77888999
Q ss_pred CCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCcccccc
Q 047139 534 CSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDF 607 (611)
Q Consensus 534 l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~~~~~ 607 (611)
++.|+.|+++.|.+. ..|.-++. +.++-.|+.-+|... .+|..+..-+.....++.++++.+.-|..+..+
T Consensus 99 m~aLr~lNl~~N~l~-~~p~vi~~-L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa~ 169 (177)
T KOG4579|consen 99 MPALRSLNLRFNPLN-AEPRVIAP-LIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQAL 169 (177)
T ss_pred hHHhhhcccccCccc-cchHHHHH-HHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccccc
Confidence 999999999999988 77888887 889999999999888 677665444555666778888988887765544
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=3.9e-09 Score=98.70 Aligned_cols=64 Identities=17% Similarity=0.075 Sum_probs=28.3
Q ss_pred CCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccc
Q 047139 303 QLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQ 368 (611)
Q Consensus 303 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 368 (611)
.+++|.+|||+++..-...-...+..++.|++|.++.|+. +..+....+...+.|.+|++.++-
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 4455555555554321111112344455555555555432 222222233445566666665553
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=4.8e-07 Score=84.96 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=16.9
Q ss_pred CCCCCEEEccCCccccccChhhhcCCCCCCEEEcCc
Q 047139 304 LSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIK 339 (611)
Q Consensus 304 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~ 339 (611)
++.+..|+|+.|++......+.+.++++|..|.++.
T Consensus 223 ~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~ 258 (418)
T KOG2982|consen 223 FPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSE 258 (418)
T ss_pred CCcchhhhhcccccccHHHHHHHcCCchhheeeccC
Confidence 344444555555554443333444555555544444
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=1.2e-06 Score=82.43 Aligned_cols=36 Identities=36% Similarity=0.446 Sum_probs=16.0
Q ss_pred CCCCEEEccCCCCCC--CCCccCCCCCCCCEEEccCCC
Q 047139 154 TNLLSLDLSSNDLQG--DIPDGFSSLNSLQLLDLSGNS 189 (611)
Q Consensus 154 ~~L~~L~L~~n~~~~--~~p~~l~~l~~L~~L~Ls~n~ 189 (611)
++++.+||.+|.|+. .+-.-+.++++|++|+++.|.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~ 108 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS 108 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc
Confidence 444455555554431 222223444555555555554
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.05 E-value=1.5e-07 Score=98.23 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=17.7
Q ss_pred CccccCCCCCCEEEccCCCCC
Q 047139 147 PHWLFNITNLLSLDLSSNDLQ 167 (611)
Q Consensus 147 p~~l~~l~~L~~L~L~~n~~~ 167 (611)
|-.+..++.|++|.++++.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~ 122 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLS 122 (1096)
T ss_pred CceeccccceeeEEecCcchh
Confidence 557788899999999999875
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.04 E-value=7.8e-07 Score=82.54 Aligned_cols=40 Identities=23% Similarity=0.389 Sum_probs=21.8
Q ss_pred CCcceeEEEecccccCcccch----hccCCCCCCEEEccCcccc
Q 047139 355 PPFKLRYLVIRYYQLGPKFPT----WLRNQTELTTLVLNSASIS 394 (611)
Q Consensus 355 ~~~~L~~L~l~~~~l~~~~~~----~l~~~~~L~~L~l~~n~l~ 394 (611)
.++.|+..+|+.|.++..+|. .+++-+.|.+|.+++|.+.
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 344555555555555554443 3345566666666666554
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=8e-06 Score=55.00 Aligned_cols=36 Identities=36% Similarity=0.667 Sum_probs=17.6
Q ss_pred CCCEEECcCCcccccCcccccCCCCCCEEECCCCcCc
Q 047139 512 TIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLS 548 (611)
Q Consensus 512 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 548 (611)
+|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.94 E-value=2.4e-07 Score=77.00 Aligned_cols=113 Identities=22% Similarity=0.298 Sum_probs=84.1
Q ss_pred CcccCCCCeeecccccch-hccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCC
Q 047139 458 RDLDISFNSINGSIPQSV-GNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSL 536 (611)
Q Consensus 458 ~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 536 (611)
+..+|++|.+. ..|+.| ...+.++.+++++|+|+ .+|+.+..++.|+.|+++.|.+. ..|..+..+.+
T Consensus 56 ~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis---------dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~ 124 (177)
T KOG4579|consen 56 TKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS---------DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIK 124 (177)
T ss_pred EEEecccchhh-hCCHHHhhccchhhhhhcchhhhh---------hchHHHhhhHHhhhcccccCccc-cchHHHHHHHh
Confidence 44566888777 344444 34567889999998887 67778888999999999999998 66777777999
Q ss_pred CCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCC
Q 047139 537 MDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKL 583 (611)
Q Consensus 537 L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l 583 (611)
+..|+.-+|.+. .||..++- ....-..++.++++.+.-+..+..+
T Consensus 125 l~~Lds~~na~~-eid~dl~~-s~~~al~~lgnepl~~~~~~klqa~ 169 (177)
T KOG4579|consen 125 LDMLDSPENARA-EIDVDLFY-SSLPALIKLGNEPLGDETKKKLQAL 169 (177)
T ss_pred HHHhcCCCCccc-cCcHHHhc-cccHHHHHhcCCcccccCccccccc
Confidence 999999999887 78877653 3444445667788887766655444
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.82 E-value=4.5e-06 Score=77.62 Aligned_cols=16 Identities=25% Similarity=0.187 Sum_probs=9.0
Q ss_pred CCCCCCcEEEccCCcc
Q 047139 254 GYLKNLRYLELWYNSF 269 (611)
Q Consensus 254 ~~l~~L~~L~L~~n~l 269 (611)
++-+.|++|.+++|.+
T Consensus 117 s~~t~l~HL~l~NnGl 132 (388)
T COG5238 117 SSSTDLVHLKLNNNGL 132 (388)
T ss_pred hcCCCceeEEeecCCC
Confidence 3445566666666644
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=1.8e-05 Score=53.31 Aligned_cols=36 Identities=31% Similarity=0.637 Sum_probs=18.0
Q ss_pred CCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCc
Q 047139 536 LMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFN 573 (611)
Q Consensus 536 ~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~ 573 (611)
+|++|++++|+|+ .+|..+.. +++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~-l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSN-LPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTT-CTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhC-CCCCCEEEecCCCCC
Confidence 4555555555555 44444443 555555555555555
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.67 E-value=0.00014 Score=73.72 Aligned_cols=138 Identities=14% Similarity=0.192 Sum_probs=80.8
Q ss_pred ccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccc
Q 047139 116 LLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQL 195 (611)
Q Consensus 116 l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~ 195 (611)
+..+.++++|++++|.++ .+|. -..+|++|.+++|.--..+|+.+ ..+|++|++++|..+ ..+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-----------sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L-~sL 110 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-----------SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEI-SGL 110 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-----------ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccc-ccc
Confidence 555678888888877665 3341 12469999998865444666655 258899999988422 234
Q ss_pred cccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCC--ccCCcccCCCCCCcEEEccCCcccccC
Q 047139 196 SRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLT--GNLPISLGYLKNLRYLELWYNSFLGSI 273 (611)
Q Consensus 196 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~ 273 (611)
|. .|+.|++..+.... +..++ ++|+.|.+.+++.. ..+|..+ .++|++|++++|... ..
T Consensus 111 P~------sLe~L~L~~n~~~~-----L~~LP-----ssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~L 171 (426)
T PRK15386 111 PE------SVRSLEIKGSATDS-----IKNVP-----NGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-IL 171 (426)
T ss_pred cc------ccceEEeCCCCCcc-----cccCc-----chHhheecccccccccccccccc--CCcccEEEecCCCcc-cC
Confidence 43 46777776554331 22232 16777777543311 0111111 146888888887755 34
Q ss_pred CCCccCcccCceEEecCC
Q 047139 274 PPSLGNLTFLEELYLTSN 291 (611)
Q Consensus 274 p~~l~~l~~L~~L~L~~n 291 (611)
|..+. .+|+.|+++.+
T Consensus 172 P~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 172 PEKLP--ESLQSITLHIE 187 (426)
T ss_pred ccccc--ccCcEEEeccc
Confidence 44333 47788887765
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.67 E-value=0.0001 Score=74.68 Aligned_cols=133 Identities=14% Similarity=0.198 Sum_probs=77.9
Q ss_pred CCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCC-CCcceeecCcccCCCC-eeecccccchhccCCCCe
Q 047139 406 LTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWS-SNLTKLYLRDLDISFN-SINGSIPQSVGNLKQLLT 483 (611)
Q Consensus 406 ~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~-~~l~~L~l~~L~Ls~n-~l~~~~~~~l~~l~~L~~ 483 (611)
.++..|++++|.++ .+|. ...+++.|.++++.--..+|..+ .++ ++|++++| .+. .+|. .|+.
T Consensus 52 ~~l~~L~Is~c~L~-sLP~--LP~sLtsL~Lsnc~nLtsLP~~LP~nL-----e~L~Ls~Cs~L~-sLP~------sLe~ 116 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV--LPNELTEITIENCNNLTTLPGSIPEGL-----EKLTVCHCPEIS-GLPE------SVRS 116 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC--CCCCCcEEEccCCCCcccCCchhhhhh-----hheEccCccccc-cccc------ccce
Confidence 67888888888766 4452 12368888888765444555433 233 45555887 443 4553 4677
Q ss_pred EECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCc-ccc-cCcccccCCCCCCEEECCCCcCcccChhHHhhcCCC
Q 047139 484 LVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNH-LSG-EIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPS 561 (611)
Q Consensus 484 L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~ 561 (611)
|+++++...++. .+|. +|+.|.+.+++ ... .+|..+ -++|++|++++|... ..|..+ ..+
T Consensus 117 L~L~~n~~~~L~------~LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~L---P~S 178 (426)
T PRK15386 117 LEIKGSATDSIK------NVPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKL---PES 178 (426)
T ss_pred EEeCCCCCcccc------cCcc------hHhheecccccccccccccccc--CCcccEEEecCCCcc-cCcccc---ccc
Confidence 777765544322 4554 46667765432 111 112111 157888888888766 455443 458
Q ss_pred CcEEECcCCc
Q 047139 562 LSILRLRSNH 571 (611)
Q Consensus 562 L~~L~ls~n~ 571 (611)
|+.|+++.|.
T Consensus 179 Lk~L~ls~n~ 188 (426)
T PRK15386 179 LQSITLHIEQ 188 (426)
T ss_pred CcEEEecccc
Confidence 8888888763
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.66 E-value=8.4e-05 Score=66.45 Aligned_cols=83 Identities=22% Similarity=0.233 Sum_probs=50.7
Q ss_pred CCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEE
Q 047139 257 KNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELS 336 (611)
Q Consensus 257 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 336 (611)
.....+|+++|.+... ..|..++.|.+|.+++|.++..-|.--.-+++|..|.|.+|.+.....-.-+..|+.|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3456677777766422 33566677777777777777554443344566777777777765443333466666777776
Q ss_pred cCccC
Q 047139 337 LIKTS 341 (611)
Q Consensus 337 l~~~~ 341 (611)
+-+|+
T Consensus 120 ll~Np 124 (233)
T KOG1644|consen 120 LLGNP 124 (233)
T ss_pred ecCCc
Confidence 66643
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.66 E-value=1.1e-05 Score=88.51 Aligned_cols=152 Identities=24% Similarity=0.307 Sum_probs=87.0
Q ss_pred CCCCEEEccCCCCCcccccccCC-CCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCC
Q 047139 178 NSLQLLDLSGNSFLEGQLSRNLG-TLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYL 256 (611)
Q Consensus 178 ~~L~~L~Ls~n~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l 256 (611)
.+|++||+++...+....|..++ .+|.|+.|.+++-.+.... |.. .|.+.++|..||+|+++++.. ..++.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d---F~~--lc~sFpNL~sLDIS~TnI~nl--~GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD---FSQ--LCASFPNLRSLDISGTNISNL--SGISRL 194 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh---HHH--HhhccCccceeecCCCCccCc--HHHhcc
Confidence 45677777666544444444444 4677777777766554321 111 122333777777777777632 566677
Q ss_pred CCCcEEEccCCcccc-cCCCCccCcccCceEEecCCccccCC------CcCCCCCCCCCEEEccCCccccccChhhhcCC
Q 047139 257 KNLRYLELWYNSFLG-SIPPSLGNLTFLEELYLTSNQMNGKF------PESFGQLSAIRVLELSDNQWEGFITDAHLRNL 329 (611)
Q Consensus 257 ~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~------~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l 329 (611)
++|+.|.+.+=.+.. ..-..+.++++|+.||+|........ -+.-..+|.||.||.+++.+...+-...+..-
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH 274 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSH 274 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhC
Confidence 777777776655442 11123566777788877776543211 11223467888888888777766555444444
Q ss_pred CCCCEEE
Q 047139 330 TSLEELS 336 (611)
Q Consensus 330 ~~L~~L~ 336 (611)
++|+.+.
T Consensus 275 ~~L~~i~ 281 (699)
T KOG3665|consen 275 PNLQQIA 281 (699)
T ss_pred ccHhhhh
Confidence 5555443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.60 E-value=0.00012 Score=65.44 Aligned_cols=103 Identities=23% Similarity=0.288 Sum_probs=62.1
Q ss_pred CCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccCh-hHHhhc
Q 047139 480 QLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIP-AWIGES 558 (611)
Q Consensus 480 ~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip-~~l~~~ 558 (611)
....+||++|.+.++. .+| .++.|.+|.|++|+|+..-|.--.-+++|+.|.|.+|+|..... .-+..
T Consensus 43 ~~d~iDLtdNdl~~l~------~lp----~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~- 111 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD------NLP----HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLAS- 111 (233)
T ss_pred ccceecccccchhhcc------cCC----CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhcc-
Confidence 4556677777665433 222 26677777777777775555544555667777777777652111 12333
Q ss_pred CCCCcEEECcCCcCcccCC---ccccCCCCCCEeeccC
Q 047139 559 MPSLSILRLRSNHFNGTIP---SELCKLSALHILDLSH 593 (611)
Q Consensus 559 l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~L~ls~ 593 (611)
+|+|++|.+-+|+++..-- -.+..+++|++||.+.
T Consensus 112 ~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 112 CPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 7777777777777763221 2345667777777654
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.46 E-value=4.1e-06 Score=82.56 Aligned_cols=305 Identities=20% Similarity=0.141 Sum_probs=152.6
Q ss_pred CCcEEEccCCCCCcc--CCcccCCCCCCcEEEccCCccc-ccCCCCc-cCcccCceEEecCC-ccccCCCc-CCCCCCCC
Q 047139 234 SLARLELGYNQLTGN--LPISLGYLKNLRYLELWYNSFL-GSIPPSL-GNLTFLEELYLTSN-QMNGKFPE-SFGQLSAI 307 (611)
Q Consensus 234 ~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l-~~l~~L~~L~L~~n-~l~~~~~~-~l~~l~~L 307 (611)
.|+.|.+.++.-.+. +-....+++++++|.+.+|... +.--..+ ..+++|+.+++..| .++....+ ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 688888888764422 2223346888888888887522 1111112 35677888888775 34433222 23457788
Q ss_pred CEEEccCCc-cccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchh--ccCCCCCC
Q 047139 308 RVLELSDNQ-WEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTW--LRNQTELT 384 (611)
Q Consensus 308 ~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~--l~~~~~L~ 384 (611)
++++++.+. +++.-......+++.++.+.+.+|.-.... .+...-.....+.++++..|.......-| -..+..|+
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le-~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE-ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH-HHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 888888764 333222235566666766666654321110 00001111223445555555322211111 13456677
Q ss_pred EEEccCcccc-cccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCC
Q 047139 385 TLVLNSASIS-DTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDIS 463 (611)
Q Consensus 385 ~L~l~~n~l~-~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls 463 (611)
.++.+++... +..-..+....++|+.+.++.++--+..-.... - .+.. .|+.+++.
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l------------------~---rn~~--~Le~l~~e 354 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML------------------G---RNCP--HLERLDLE 354 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh------------------h---cCCh--hhhhhccc
Confidence 7777666432 222334444556666666666653211110000 0 0111 12344445
Q ss_pred CCeee--cccccchhccCCCCeEECcCCCCC-CCCCCcccccCcccccCcCCCCEEECcCCccc-ccCcccccCCCCCCE
Q 047139 464 FNSIN--GSIPQSVGNLKQLLTLVISNNNLS-DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLS-GEIPPSLKNCSLMDS 539 (611)
Q Consensus 464 ~n~l~--~~~~~~l~~l~~L~~L~L~~n~i~-~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~ 539 (611)
++... +.+...-.+++.|+.+.+++|... |.+.-.++ ..-..+..|+.+.|+++... ...-+.+..+++|+.
T Consensus 355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~----~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler 430 (483)
T KOG4341|consen 355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS----SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER 430 (483)
T ss_pred ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh----hccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence 55432 112222245777888888877532 22111111 12233567788888888643 344456677778888
Q ss_pred EECCCCc-CcccChhHHhhcCCCCcEEE
Q 047139 540 LDLGENQ-LSGNIPAWIGESMPSLSILR 566 (611)
Q Consensus 540 L~Ls~N~-l~~~ip~~l~~~l~~L~~L~ 566 (611)
+++-+++ ++.+-...+..++|++++.-
T Consensus 431 i~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 431 IELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred eeeechhhhhhhhhHHHHhhCccceehh
Confidence 8887775 33222233445577666653
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.27 E-value=0.00014 Score=80.02 Aligned_cols=111 Identities=23% Similarity=0.257 Sum_probs=59.4
Q ss_pred CCCCCEEEccCCCCCCC-CCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCC-ccchhhhcCcccC
Q 047139 153 ITNLLSLDLSSNDLQGD-IPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSG-EVSDFIDGLSECI 230 (611)
Q Consensus 153 l~~L~~L~L~~n~~~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~~~ 230 (611)
+|.|++|.+.+-.+... .-....++++|+.||+|++.+ +. + ..++++++|+.|.+.+=.+.. ..-..+..++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~--- 220 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-SN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLK--- 220 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCc-cC-c-HHHhccccHHHHhccCCCCCchhhHHHHhccc---
Confidence 56666666666544321 122345666667777766663 21 1 556666666666666655543 2222333344
Q ss_pred CCCCCcEEEccCCCCCccC------CcccCCCCCCcEEEccCCccccc
Q 047139 231 NSSSLARLELGYNQLTGNL------PISLGYLKNLRYLELWYNSFLGS 272 (611)
Q Consensus 231 ~~~~L~~L~Ls~n~l~~~~------p~~l~~l~~L~~L~L~~n~l~~~ 272 (611)
+|+.||+|........ -+.-..+|+|+.||.++..+.+.
T Consensus 221 ---~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 221 ---KLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred ---CCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 6777777665443211 11122467777777777666543
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=2.1e-05 Score=73.51 Aligned_cols=101 Identities=26% Similarity=0.279 Sum_probs=74.8
Q ss_pred cCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhh
Q 047139 478 LKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGE 557 (611)
Q Consensus 478 l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~ 557 (611)
+.+.+.|+..+|.+.|++. ...|+.|++|.||-|+|+..- .+..|+.|+.|+|..|.|.+.---...+
T Consensus 18 l~~vkKLNcwg~~L~DIsi----------c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLk 85 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI----------CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLK 85 (388)
T ss_pred HHHhhhhcccCCCccHHHH----------HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHh
Confidence 4567778888888877663 234778999999999998553 4778999999999999987322223334
Q ss_pred cCCCCcEEECcCCcCcccCCcc-----ccCCCCCCEee
Q 047139 558 SMPSLSILRLRSNHFNGTIPSE-----LCKLSALHILD 590 (611)
Q Consensus 558 ~l~~L~~L~ls~n~l~~~~p~~-----l~~l~~L~~L~ 590 (611)
++|+|++|.|..|+-.|.-+.. +..+++|+.||
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 5899999999999988876654 34567777776
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.04 E-value=0.00017 Score=67.32 Aligned_cols=62 Identities=27% Similarity=0.387 Sum_probs=26.2
Q ss_pred cCcccCceEEecCC--ccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCc
Q 047139 278 GNLTFLEELYLTSN--QMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIK 339 (611)
Q Consensus 278 ~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~ 339 (611)
-.+++|+.|.++.| .+.+.++.....+++|+++++++|++...-....+..+.+|..|++.+
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n 125 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFN 125 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhccc
Confidence 34444555555555 333333333333455555555555544211112233444444444444
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.94 E-value=0.0014 Score=56.36 Aligned_cols=124 Identities=16% Similarity=0.246 Sum_probs=61.1
Q ss_pred cchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccCh
Q 047139 473 QSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIP 552 (611)
Q Consensus 473 ~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 552 (611)
.+|.++++|+.+.+.. .+..+....|.+ +++|+.+.+.++ +.......|.++++++.+.+.+ .+. .++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~--------~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~ 73 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSN--------CTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIG 73 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT---------TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccc--------cccccccccccc-ccccceeeeecccccccccccc-ccc-ccc
Confidence 3567777888888764 455455444444 667888888775 5544456677887888888865 443 455
Q ss_pred hHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCccccccCCCC
Q 047139 553 AWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT 611 (611)
Q Consensus 553 ~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~~~~~~~l~ 611 (611)
...+..+++|+.+++..+ +...-...|.+. .|+.+.+.. .+...-..+|.+.+.|+
T Consensus 74 ~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 74 DNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 555555788888888765 554444556665 788887775 34333334576666553
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.85 E-value=2.5e-05 Score=77.15 Aligned_cols=85 Identities=18% Similarity=0.064 Sum_probs=52.2
Q ss_pred CCCcEEEccCCcccccCC--CCccCcccCceEEecCCc-cccCCCcCC-CCCCCCCEEEccCC-ccccccChhhhcCCCC
Q 047139 257 KNLRYLELWYNSFLGSIP--PSLGNLTFLEELYLTSNQ-MNGKFPESF-GQLSAIRVLELSDN-QWEGFITDAHLRNLTS 331 (611)
Q Consensus 257 ~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~L~~n-~l~~~~~~~~l~~l~~ 331 (611)
..|+.|.+.++.-.+.-+ ..-.++++++.|.+.+|. ++......+ ..+++|++|++..+ .++...-......+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 357888888876433211 123467888888888885 332222222 35678888888884 3444333334557888
Q ss_pred CCEEEcCccC
Q 047139 332 LEELSLIKTS 341 (611)
Q Consensus 332 L~~L~l~~~~ 341 (611)
|+++++++|.
T Consensus 218 L~~lNlSwc~ 227 (483)
T KOG4341|consen 218 LKYLNLSWCP 227 (483)
T ss_pred HHHhhhccCc
Confidence 8888888854
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.78 E-value=0.0065 Score=52.09 Aligned_cols=93 Identities=20% Similarity=0.225 Sum_probs=35.4
Q ss_pred CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEcc
Q 047139 234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS 313 (611)
Q Consensus 234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 313 (611)
+|+.+.+..+ +.......|.++++++.+.+.+ .+.......|..+++|+.+++..+ +.......|.+. .++.+.+.
T Consensus 36 ~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 36 SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 4445554443 3323334455555666666654 333233344555666666666544 332333345555 66666665
Q ss_pred CCccccccChhhhcCCCCC
Q 047139 314 DNQWEGFITDAHLRNLTSL 332 (611)
Q Consensus 314 ~n~l~~~~~~~~l~~l~~L 332 (611)
.+ +.. ++...|.++++|
T Consensus 112 ~~-~~~-i~~~~F~~~~~l 128 (129)
T PF13306_consen 112 SN-ITK-IEENAFKNCTKL 128 (129)
T ss_dssp TB--SS-----GGG-----
T ss_pred CC-ccE-ECCccccccccC
Confidence 42 222 334456666555
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.51 E-value=0.002 Score=60.37 Aligned_cols=111 Identities=22% Similarity=0.296 Sum_probs=77.1
Q ss_pred cccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCC--cccccCcccccCCCCCCEEECCCCcCc
Q 047139 471 IPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNN--HLSGEIPPSLKNCSLMDSLDLGENQLS 548 (611)
Q Consensus 471 ~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 548 (611)
+....-.+..|+.+.+.+..++.+. .+|. +++|++|.+|.| ++.+.++.-...+++|++|++++|+|.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~------~~P~----Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLT------NFPK----LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceeecc------cCCC----cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 5555566677888888877776433 2343 789999999999 777777777778899999999999886
Q ss_pred c--cChhHHhhcCCCCcEEECcCCcCcccCC---ccccCCCCCCEeeccC
Q 047139 549 G--NIPAWIGESMPSLSILRLRSNHFNGTIP---SELCKLSALHILDLSH 593 (611)
Q Consensus 549 ~--~ip~~l~~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~L~ls~ 593 (611)
. +++. +.. +.+|..|++.+|.-++.-- ..|.-+++|++||-..
T Consensus 105 ~lstl~p-l~~-l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 105 DLSTLRP-LKE-LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred cccccch-hhh-hcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 2 2222 233 7788899999998775211 1234457777666443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.00015 Score=67.93 Aligned_cols=78 Identities=24% Similarity=0.275 Sum_probs=39.5
Q ss_pred CCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEc
Q 047139 258 NLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL 337 (611)
Q Consensus 258 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l 337 (611)
+.++|+..+|.+.+. ....+++.|++|.|+-|+++..- .+..+++|++|+|..|.|........+.++++|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 344455555554432 12334555555555555555322 24555556666666555554333344555555555555
Q ss_pred Cc
Q 047139 338 IK 339 (611)
Q Consensus 338 ~~ 339 (611)
..
T Consensus 96 ~E 97 (388)
T KOG2123|consen 96 DE 97 (388)
T ss_pred cc
Confidence 55
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.94 E-value=0.0024 Score=35.67 Aligned_cols=19 Identities=53% Similarity=0.670 Sum_probs=8.8
Q ss_pred CCEeeccCCcCccCCCcccc
Q 047139 586 LHILDLSHNNLLGPIPYCVG 605 (611)
Q Consensus 586 L~~L~ls~n~l~g~iP~~~~ 605 (611)
|++||+++|+++ .||..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 444444444444 4444443
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.44 E-value=0.00015 Score=76.31 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=22.7
Q ss_pred eeEEEecccccCccc----chhccCCCCCCEEEccCcccccc
Q 047139 359 LRYLVIRYYQLGPKF----PTWLRNQTELTTLVLNSASISDT 396 (611)
Q Consensus 359 L~~L~l~~~~l~~~~----~~~l~~~~~L~~L~l~~n~l~~~ 396 (611)
+..+.+.+|.+.... ...+...+.|+.|++++|.+.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~ 130 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDE 130 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccH
Confidence 666677777665432 23445566666666666666643
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.40 E-value=0.0061 Score=34.02 Aligned_cols=19 Identities=37% Similarity=0.641 Sum_probs=9.7
Q ss_pred CcEEECcCCcCcccCCcccc
Q 047139 562 LSILRLRSNHFNGTIPSELC 581 (611)
Q Consensus 562 L~~L~ls~n~l~~~~p~~l~ 581 (611)
|++|++++|+++ .+|++|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4554443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.93 E-value=0.00062 Score=71.71 Aligned_cols=17 Identities=24% Similarity=0.086 Sum_probs=9.6
Q ss_pred CCcceeEEEecccccCc
Q 047139 355 PPFKLRYLVIRYYQLGP 371 (611)
Q Consensus 355 ~~~~L~~L~l~~~~l~~ 371 (611)
..+.|+.|++++|.++.
T Consensus 113 t~~~L~~L~l~~n~l~~ 129 (478)
T KOG4308|consen 113 TLPTLGQLDLSGNNLGD 129 (478)
T ss_pred ccccHhHhhcccCCCcc
Confidence 34456666666666553
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.56 E-value=0.009 Score=64.18 Aligned_cols=62 Identities=18% Similarity=0.079 Sum_probs=28.3
Q ss_pred cccCceEEecCCc-cccCCCcCCC-CCCCCCEEEccCCc-cccccChhhhcCCCCCCEEEcCccC
Q 047139 280 LTFLEELYLTSNQ-MNGKFPESFG-QLSAIRVLELSDNQ-WEGFITDAHLRNLTSLEELSLIKTS 341 (611)
Q Consensus 280 l~~L~~L~L~~n~-l~~~~~~~l~-~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~l~~~~ 341 (611)
+++|+.|+++++. ++...-..+. .+++|+.|.+.++. ++...-......++.|++|++++|.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 3455555555554 3322212222 24556666555444 3333222334455556666666543
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.26 E-value=0.051 Score=58.34 Aligned_cols=97 Identities=21% Similarity=0.135 Sum_probs=58.6
Q ss_pred cchhccCCCCeEECcCC-CCCCCCCCcccccCcccccCcCCCCEEECcCCc-ccccCccccc-CCCCCCEEECCCCc-Cc
Q 047139 473 QSVGNLKQLLTLVISNN-NLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNH-LSGEIPPSLK-NCSLMDSLDLGENQ-LS 548 (611)
Q Consensus 473 ~~l~~l~~L~~L~L~~n-~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~-~l~~L~~L~Ls~N~-l~ 548 (611)
.....++.|+.|+++++ ....... . ........+++|+.|+++++. +++..-..+. .|++|+.|.+.+|. ++
T Consensus 208 ~~~~~~~~L~~L~l~~~~~~~~~~~---~-~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt 283 (482)
T KOG1947|consen 208 ALALKCPNLEELDLSGCCLLITLSP---L-LLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLT 283 (482)
T ss_pred HHHhhCchhheecccCcccccccch---h-HhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccc
Confidence 33456777888887763 1110000 0 011122335778888888877 5544333333 37788888877776 67
Q ss_pred ccChhHHhhcCCCCcEEECcCCcCc
Q 047139 549 GNIPAWIGESMPSLSILRLRSNHFN 573 (611)
Q Consensus 549 ~~ip~~l~~~l~~L~~L~ls~n~l~ 573 (611)
+..-..+...++.|++|++++|...
T Consensus 284 ~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 284 DEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhHHHHHHHhcCcccEEeeecCccc
Confidence 6666667767788888888877653
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.26 E-value=0.083 Score=27.26 Aligned_cols=6 Identities=50% Similarity=0.678 Sum_probs=2.1
Q ss_pred EECcCC
Q 047139 565 LRLRSN 570 (611)
Q Consensus 565 L~ls~n 570 (611)
|+|++|
T Consensus 6 L~l~~n 11 (17)
T PF13504_consen 6 LDLSNN 11 (17)
T ss_dssp EEETSS
T ss_pred EECCCC
Confidence 333333
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.87 E-value=0.16 Score=29.46 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=11.4
Q ss_pred CCCCEEECCCCcCcccChhHHh
Q 047139 535 SLMDSLDLGENQLSGNIPAWIG 556 (611)
Q Consensus 535 ~~L~~L~Ls~N~l~~~ip~~l~ 556 (611)
++|+.|+|++|+|+ .+|.+.+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45556666666655 4555443
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.87 E-value=0.16 Score=29.46 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=11.4
Q ss_pred CCCCEEECCCCcCcccChhHHh
Q 047139 535 SLMDSLDLGENQLSGNIPAWIG 556 (611)
Q Consensus 535 ~~L~~L~Ls~N~l~~~ip~~l~ 556 (611)
++|+.|+|++|+|+ .+|.+.+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45556666666655 4555443
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.66 E-value=0.13 Score=29.21 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=7.7
Q ss_pred CCCCEEECCCCcCcccCh
Q 047139 535 SLMDSLDLGENQLSGNIP 552 (611)
Q Consensus 535 ~~L~~L~Ls~N~l~~~ip 552 (611)
++|++|+|++|+|++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 345555555555544433
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.69 E-value=0.054 Score=48.98 Aligned_cols=82 Identities=18% Similarity=0.169 Sum_probs=43.4
Q ss_pred CCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccccc-Cccccc-CCCCCCEEECCCC-cCcccChhHHh
Q 047139 480 QLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE-IPPSLK-NCSLMDSLDLGEN-QLSGNIPAWIG 556 (611)
Q Consensus 480 ~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~-~l~~L~~L~Ls~N-~l~~~ip~~l~ 556 (611)
.++.+|-+++.|...+- +.+.++++++.|.+.+|.--+. --+-++ -.++|+.|++++| +||.....++.
T Consensus 102 ~IeaVDAsds~I~~eGl--------e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~ 173 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGL--------EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL 173 (221)
T ss_pred eEEEEecCCchHHHHHH--------HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH
Confidence 35666666655442222 2233366666666666642211 000111 2356777777766 46666666666
Q ss_pred hcCCCCcEEECcCC
Q 047139 557 ESMPSLSILRLRSN 570 (611)
Q Consensus 557 ~~l~~L~~L~ls~n 570 (611)
. +++|+.|.+.+=
T Consensus 174 ~-lknLr~L~l~~l 186 (221)
T KOG3864|consen 174 K-LKNLRRLHLYDL 186 (221)
T ss_pred H-hhhhHHHHhcCc
Confidence 5 677777766543
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.15 E-value=0.014 Score=53.62 Aligned_cols=84 Identities=17% Similarity=0.163 Sum_probs=57.9
Q ss_pred cCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEe
Q 047139 510 LLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHIL 589 (611)
Q Consensus 510 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L 589 (611)
....+.||++.|++- ..-..|..++.+..||++.|.+. ..|.+..+ ...++.+++..|..+ ..|.++...+.++.+
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q-~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQ-QRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHH-HHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 456677777777665 33345556666777777777776 66777665 667777777777776 677777777777777
Q ss_pred eccCCcCc
Q 047139 590 DLSHNNLL 597 (611)
Q Consensus 590 ~ls~n~l~ 597 (611)
++..|++.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 77777654
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.72 E-value=0.069 Score=48.32 Aligned_cols=88 Identities=16% Similarity=0.105 Sum_probs=62.9
Q ss_pred ceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCC-cccccCcccc
Q 047139 453 TKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNN-HLSGEIPPSL 531 (611)
Q Consensus 453 ~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n-~l~~~~p~~l 531 (611)
....++.+|-++..|...--+.+.+++.++.|.+.+|.- +++-.+..-- +-.++|+.|++++| +|+...-..+
T Consensus 99 ~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~--~dD~~L~~l~----~~~~~L~~L~lsgC~rIT~~GL~~L 172 (221)
T KOG3864|consen 99 DNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKY--FDDWCLERLG----GLAPSLQDLDLSGCPRITDGGLACL 172 (221)
T ss_pred CcceEEEEecCCchHHHHHHHHHhccchhhhheeccccc--hhhHHHHHhc----ccccchheeeccCCCeechhHHHHH
Confidence 334456777788888877777788888899998888752 2221121100 12469999999988 6887777788
Q ss_pred cCCCCCCEEECCCCc
Q 047139 532 KNCSLMDSLDLGENQ 546 (611)
Q Consensus 532 ~~l~~L~~L~Ls~N~ 546 (611)
..+++|+.|.+.+=.
T Consensus 173 ~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 173 LKLKNLRRLHLYDLP 187 (221)
T ss_pred HHhhhhHHHHhcCch
Confidence 999999999887754
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.64 E-value=0.029 Score=51.65 Aligned_cols=82 Identities=20% Similarity=0.160 Sum_probs=60.2
Q ss_pred CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEcc
Q 047139 234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS 313 (611)
Q Consensus 234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 313 (611)
..+.||++.|++. .+-..+..++.+..++++.|.+. ..|..+++...++.+++..|..+ ..|.+++..++++++++-
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 5566666666654 34455556677777888887776 67777888888888888877776 678888888888888888
Q ss_pred CCccc
Q 047139 314 DNQWE 318 (611)
Q Consensus 314 ~n~l~ 318 (611)
+|.+.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 88764
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.19 E-value=0.66 Score=26.24 Aligned_cols=20 Identities=35% Similarity=0.315 Sum_probs=9.5
Q ss_pred CCCCEEEccCcccccccchh
Q 047139 381 TELTTLVLNSASISDTLPSW 400 (611)
Q Consensus 381 ~~L~~L~l~~n~l~~~~p~~ 400 (611)
++|++|++++|++++.....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 45556666666655444433
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.56 E-value=1.1 Score=25.87 Aligned_cols=14 Identities=57% Similarity=0.574 Sum_probs=9.5
Q ss_pred CCCCEEECcCCccc
Q 047139 511 LTIRFLVLSNNHLS 524 (611)
Q Consensus 511 ~~L~~L~Ls~n~l~ 524 (611)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45677777777766
No 86
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.56 E-value=1.1 Score=25.87 Aligned_cols=14 Identities=57% Similarity=0.574 Sum_probs=9.5
Q ss_pred CCCCEEECcCCccc
Q 047139 511 LTIRFLVLSNNHLS 524 (611)
Q Consensus 511 ~~L~~L~Ls~n~l~ 524 (611)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45677777777766
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=74.76 E-value=2.4 Score=25.08 Aligned_cols=13 Identities=38% Similarity=0.624 Sum_probs=6.9
Q ss_pred CCCEEECCCCcCc
Q 047139 536 LMDSLDLGENQLS 548 (611)
Q Consensus 536 ~L~~L~Ls~N~l~ 548 (611)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=73.51 E-value=2.5 Score=24.50 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=9.5
Q ss_pred CCcEEECcCCcCcccCCc
Q 047139 561 SLSILRLRSNHFNGTIPS 578 (611)
Q Consensus 561 ~L~~L~ls~n~l~~~~p~ 578 (611)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4556666666665 4443
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.22 E-value=4.3 Score=23.61 Aligned_cols=13 Identities=31% Similarity=0.659 Sum_probs=6.1
Q ss_pred CCCEEECCCCcCc
Q 047139 536 LMDSLDLGENQLS 548 (611)
Q Consensus 536 ~L~~L~Ls~N~l~ 548 (611)
+|+.|+++.|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4444444444443
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=63.19 E-value=28 Score=36.23 Aligned_cols=81 Identities=21% Similarity=0.246 Sum_probs=41.5
Q ss_pred CCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCc---cCcccCceEEecCCccccCCCcCCCCC---CC
Q 047139 233 SSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSL---GNLTFLEELYLTSNQMNGKFPESFGQL---SA 306 (611)
Q Consensus 233 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~ 306 (611)
+.+++++++.|.+....|..+..-.. -+.++.|.++...-..+ ..-..+.+++++.|.....+|..+..+ ..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Confidence 36788888888887666665543111 15555565543211111 011246677777776666665543221 23
Q ss_pred CCEEEccCC
Q 047139 307 IRVLELSDN 315 (611)
Q Consensus 307 L~~L~L~~n 315 (611)
+++++.+..
T Consensus 243 l~~ld~s~t 251 (553)
T KOG4242|consen 243 LFKLDRSTT 251 (553)
T ss_pred hhccccccc
Confidence 445554443
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.01 E-value=4.6 Score=42.56 Aligned_cols=67 Identities=25% Similarity=0.280 Sum_probs=33.3
Q ss_pred cCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCC--CCCCEEECCCCcCccc
Q 047139 478 LKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNC--SLMDSLDLGENQLSGN 550 (611)
Q Consensus 478 l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~N~l~~~ 550 (611)
.+.+..+.|++|++.+++. ++ .--..-++|..|+|++|...-.....+.++ ..|++|-+.+|.+...
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~--~s----slsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDA--LS----SLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred Ccceeeeecccchhhchhh--hh----HHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 4455566666666654441 11 111224567777777772221111223222 2366777777776543
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.52 E-value=17 Score=38.54 Aligned_cols=64 Identities=27% Similarity=0.249 Sum_probs=42.9
Q ss_pred cCCCCEEECcCCccccc--CcccccCCCCCCEEECCCC--cCcccChhHHhh-cCCCCcEEECcCCcCccc
Q 047139 510 LLTIRFLVLSNNHLSGE--IPPSLKNCSLMDSLDLGEN--QLSGNIPAWIGE-SMPSLSILRLRSNHFNGT 575 (611)
Q Consensus 510 l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~N--~l~~~ip~~l~~-~l~~L~~L~ls~n~l~~~ 575 (611)
.+.+..++|++|++-.. +...-...++|+.|+|++| .+.. ..++.+ +...|++|.+.+|++...
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccc
Confidence 45788899999987632 2222345578999999999 4442 222221 245688999999998754
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=34.50 E-value=27 Score=19.98 Aligned_cols=12 Identities=33% Similarity=0.429 Sum_probs=7.0
Q ss_pred CCCcEEECcCCc
Q 047139 560 PSLSILRLRSNH 571 (611)
Q Consensus 560 ~~L~~L~ls~n~ 571 (611)
++|+.|+|++|+
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666653
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=33.23 E-value=29 Score=44.39 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=25.4
Q ss_pred ECcCCcccccCcccccCCCCCCEEECCCCcCc
Q 047139 517 VLSNNHLSGEIPPSLKNCSLMDSLDLGENQLS 548 (611)
Q Consensus 517 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 548 (611)
||++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 67888888666667888888999999888653
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=32.65 E-value=38 Score=35.28 Aligned_cols=70 Identities=29% Similarity=0.273 Sum_probs=38.5
Q ss_pred CcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHH--hcCCCCCEEEccCcccccccCcccc
Q 047139 356 PFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFL--QLNLTLDELDVGGNHLSGRIPNTLV 427 (611)
Q Consensus 356 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~--~~~~~L~~L~ls~n~l~~~~~~~~~ 427 (611)
.+.+++++++.|.+....|..+..-..= +.+..|+++...-..+. ..-..+.+++++.|.....+|....
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~p--l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n 235 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGNP--LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLN 235 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCCc--cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHH
Confidence 4567788888888777766555432111 55566655533222111 0112466677777766666665543
No 96
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=22.51 E-value=1e+02 Score=28.70 Aligned_cols=14 Identities=14% Similarity=0.387 Sum_probs=6.7
Q ss_pred CCCEEECCCCcCcc
Q 047139 536 LMDSLDLGENQLSG 549 (611)
Q Consensus 536 ~L~~L~Ls~N~l~~ 549 (611)
+|+--+|.++.+.|
T Consensus 217 NLeganLkG~~~eg 230 (302)
T KOG1665|consen 217 NLEGANLKGADMEG 230 (302)
T ss_pred cccccccccccccc
Confidence 44444555554443
Done!